Citrus Sinensis ID: 025207
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Y5N5 | 214 | HemK methyltransferase fa | yes | no | 0.757 | 0.906 | 0.432 | 9e-36 | |
| Q9UT94 | 231 | eRF1 methyltransferase ca | yes | no | 0.800 | 0.887 | 0.334 | 1e-24 | |
| Q58338 | 197 | Putative protein methyltr | yes | no | 0.718 | 0.934 | 0.295 | 4e-20 | |
| Q03920 | 221 | eRF1 methyltransferase ca | yes | no | 0.757 | 0.877 | 0.294 | 7e-16 | |
| O28490 | 177 | Putative protein methyltr | yes | no | 0.582 | 0.841 | 0.352 | 1e-09 | |
| O66506 | 281 | Release factor glutamine | yes | no | 0.523 | 0.476 | 0.302 | 6e-08 | |
| A1JJ89 | 347 | Ribosomal RNA small subun | yes | no | 0.277 | 0.204 | 0.316 | 3e-07 | |
| Q748B2 | 284 | Release factor glutamine | yes | no | 0.468 | 0.422 | 0.276 | 6e-07 | |
| Q68VR6 | 518 | Bifunctional methyltransf | yes | no | 0.585 | 0.289 | 0.282 | 9e-07 | |
| Q66EW9 | 347 | Ribosomal RNA small subun | yes | no | 0.277 | 0.204 | 0.303 | 1e-06 |
| >sp|Q9Y5N5|HEMK2_HUMAN HemK methyltransferase family member 2 OS=Homo sapiens GN=N6AMT1 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 150 bits (379), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+VYEP +D+F L++AL A L +C+EVG GSG V LA M+G P Y+
Sbjct: 21 DVYEPAEDTFLLLNALEAAAAELAGVE--ICLEVGSGSGVVSAFLASMIG---PQALYMC 75
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TDINP A T +T + VH + TD+ GL RL VD++V NPPYV TP EVG
Sbjct: 76 TDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLVFNPPYVVTPPQEVGS 135
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GI +AWAGG+NGR V+D+ P LLS +G YLVT+ N+P +I M KG
Sbjct: 136 HGIEAAWAGGKNGREVMDRFFPLVPDLLSPKGLFYLVTIKENNPEEILKIMKTKGLQGTT 195
Query: 196 VVQRSTEEENLHIIKFWRD 214
+ R +E L ++KF +
Sbjct: 196 ALSRQAGQETLSVLKFTKS 214
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Heterodimeric methyltransferase that catalyzes N5-methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. ETF1 needs to be complexed to ERF3 in its GTP-bound form to be efficiently methylated. May play a role in the modulation of arsenic-induced toxicity. May be involved in the conversion of monomethylarsonous acid (3+) into the less toxic dimethylarsonic acid. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9UT94|MTQ2_SCHPO eRF1 methyltransferase catalytic subunit mtq2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtq2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 16/221 (7%)
Query: 5 TAQIRLVSSHPEVYEPCDDSFALVDALLADRINL---VEHHPVLCMEVGCGSGYVITSLA 61
T+Q+RL +VYEP +D+FAL+DAL D L E +L E+GCGSG + L
Sbjct: 7 TSQLRL-KEFQDVYEPAEDTFALLDALEKDAKKLRQMAEMKNLLTAEIGCGSGCASSFLK 65
Query: 62 LMLGQEVPGVQYIATDINPYAVEVTRKT-LEAHNVHAD------LINTDIASGLEKRLAG 114
+ + P V ++ +DI+ A ++ T L ++ D + T G+ RL
Sbjct: 66 SGILKNKPIVHFM-SDISNSACRASKITALNNRELYKDDNGLFITVQTSFLDGI--RLGN 122
Query: 115 LVDVMVVNPPYVPTPEDEVGREG--IASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172
VD+++ NPPYVPT +E+ E IASAWAGG +G V +L +LS+ G Y+V
Sbjct: 123 GVDILIFNPPYVPTEFEEIPSEAATIASAWAGGTDGMDVTSTLLNQLKDILSQDGVFYMV 182
Query: 173 TLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213
+ N IC + + G+ ++R E L I++ +R
Sbjct: 183 AVARNKLHSICEILQKDGFIVNETLKRKAGRETLSILRIYR 223
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Methylates eRF1 on 'Gln-182' using S-adenosyl L-methionine as methyl donor. eRF1 needs to be complexed to eRF3 in its GTP-bound form to be efficiently methylated. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q58338|Y928_METJA Putative protein methyltransferase MJ0928 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0928 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 16/200 (8%)
Query: 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQY 73
HPEVYEP +DS L+ NLV+ +E+G G+G + + A +++ GV
Sbjct: 13 HPEVYEPAEDSILLLK-------NLVDVKNKDVLEIGVGTGLISIACAKKGAKKIVGV-- 63
Query: 74 IATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV 133
DINPYAV++ ++ + +NV+ +D L + + G DV++ NPPY+PT EDE
Sbjct: 64 ---DINPYAVKLAKENAKLNNVNISFFESD----LFENVTGKFDVILFNPPYLPTSEDEK 116
Query: 134 GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193
+ A+ GG++GR ++D+ + L K G + ++ + + ++ G+
Sbjct: 117 IDSYLNFAFDGGKDGREILDRFIYELPNYLKKGGVVQILQSSLTGEKETINKLKPLGFKV 176
Query: 194 RIVVQRSTEEENLHIIKFWR 213
I + E L +I WR
Sbjct: 177 EISARLKVPFEELMVINAWR 196
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Putative protein methyltransferase using S-adenosyl-L-methionine as the methyl donor. May methylate a Gln residue in target proteins. Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
| >sp|Q03920|MTQ2_YEAST eRF1 methyltransferase catalytic subunit MTQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTQ2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 109/217 (50%), Gaps = 23/217 (10%)
Query: 14 HPEVYEPCDDSFALVDALLADRINLVEHH----PVLCMEVGCGSGYVITSLALMLGQEVP 69
+ +VYEP +DSF ++D L + L + ++C E+G GSG V T LM + +P
Sbjct: 11 YDKVYEPAEDSFLILDCLEKEHDFLKQKFGNRLAIVC-EIGSGSGIVTT--FLMQNKIIP 67
Query: 70 GVQ--YIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPP 124
++A DINP+A+E T T + ++ + ++I D+ S + VDV++ NPP
Sbjct: 68 QENSIHLAVDINPWALEATLDTAKLNSCKSSFLEVIQADLNSSIRN---NQVDVLIFNPP 124
Query: 125 YVPTP--EDEVGREGIASAWA-----GGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177
YVP D G A W GG++G A+ DK+L +++LS G Y++ N
Sbjct: 125 YVPAECVPDVPGSREEADQWLDLALLGGKDGMAITDKLLRQLEQILSPDGVAYILFCARN 184
Query: 178 DPSQICLQMMEK-GYAARIVVQRSTEEENLHIIKFWR 213
P ++ + ++ + +++ R E L + F R
Sbjct: 185 KPKEVIKRFVDTYKWNVKLIETRKAGWEVLSVYSFTR 221
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Methylates eRF1 on 'Gln-182' using S-adenosyl L-methionine as methyl donor. eRF1 needs to be complexed to eRF3 in its GTP-bound form to be efficiently methylated. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O28490|Y1784_ARCFU Putative protein methyltransferase AF_1784 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1784 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 21/170 (12%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYA-VEVTRKTLEAHNVHADLINTDIA 105
+EVG GSG+V L G+ + TDI+P+A +E+ RK L D++ TDIA
Sbjct: 27 IEVGAGSGFVAERLK---GK---CKCILTTDISPFAAMELRRKGL-------DVVMTDIA 73
Query: 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGR-EGIASAWAGGENGRAVIDKILPSADKLLS 164
G+ K+ + +++ NPPYV EDE+ R + + A GG+ G VI K L S D++++
Sbjct: 74 KGIRKKFS----LVLFNPPYVEL-EDELRRGDWLDVAIDGGKKGVKVIKKFLDSLDEIMA 128
Query: 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRD 214
+RG L+ + N+P L + E+G+ IV +R E L IK W++
Sbjct: 129 ERGRAILIASSQNEPDVFDL-IDERGFRYEIVGERGLFFEKLFAIKIWKE 177
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Putative protein methyltransferase using S-adenosyl-L-methionine as the methyl donor. May methylate a Gln residue in target proteins. Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) |
| >sp|O66506|PRMC_AQUAE Release factor glutamine methyltransferase OS=Aquifex aeolicus (strain VF5) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
E+G G+G + +L + E P + ATD+NP AVE+T++ + H V D + + +
Sbjct: 118 FELGSGTGCISINLLI----ERPKLVMYATDVNPDAVELTKENAKLHKVD-DRLFVFLGN 172
Query: 107 GLEKRLAGLVDVMVVNPPYVPT------PEDEVGREGIASAWAGGENGRAVIDKILPSAD 160
E D +V NPPY+P PE EV +EG S GG+ G + I
Sbjct: 173 AFEPVKGMKFDFIVSNPPYIPENFWEILPE-EVKKEGYTSL-IGGKKGWEFYELIAEEGT 230
Query: 161 KLLSKRGWLYLVTLTANDPSQICLQMMEK 189
K L + G++ L +D ++ +++EK
Sbjct: 231 KHLKENGFIALE--IGHDQGKVVKELLEK 257
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Aquifex aeolicus (strain VF5) (taxid: 224324) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|A1JJ89|RSMC_YERE8 Ribosomal RNA small subunit methyltransferase C OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rsmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 51/79 (64%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL A+N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LACVLAQQSPKIKWTLSDVSAAAIEASRATLAANNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
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Specifically methylates the guanosine in position 1207 of 16S rRNA in the 30S particle. Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 2 |
| >sp|Q748B2|PRMC_GEOSL Release factor glutamine methyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN 101
H +++G GSG + +LA +++P Q + + +P A+ + ++ E H L
Sbjct: 117 HAAAVLDIGVGSGCIAVALA----KQLPHAQVVGVEQSPGAIALAQRNAERHGARVTLFE 172
Query: 102 TDIASGL-EKRLAGLVDVMVVNPPYVPTP-----EDEVGREGIASAWAGGENGRAVIDKI 155
+ L ++R D++V NPPY+PT + EV +A GG +G I
Sbjct: 173 GSLFEPLGDQRF----DLIVSNPPYIPTADLEALQPEVREYEPRAALDGGSDGLDFYRLI 228
Query: 156 LPSADKLLSKRGWL 169
+P+A + L+ GWL
Sbjct: 229 VPAAPEYLNPGGWL 242
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q68VR6|RFTRM_RICTY Bifunctional methyltransferase OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=prmC/trmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 34 DRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93
D + ++H+ +L E+G GSG + SL E+P IATDI+ A++V + H
Sbjct: 126 DSVKTIQHYNIL--ELGTGSGCIAISLLC----ELPNTSVIATDISVDAIKVAKSNTIKH 179
Query: 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-EVGREGIAS----AWAGGENG 148
NV D I ++ EK D++V NPPY+ E E+ E I A E+G
Sbjct: 180 NV-TDRIQIIHSNWFEKLNKQKFDLIVSNPPYISHSEKLEMAIETINYEPHIALFAEEDG 238
Query: 149 RAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGY 191
I +A + L G + ++ + + ++C + GY
Sbjct: 239 LEAYSIIAKNAKQFLKPNGKI-ILEIGFSQAEKVCQIFLNYGY 280
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Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q66EW9|RSMC_YERPS Ribosomal RNA small subunit methyltransferase C OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rsmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL +N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LASVLAQQSPKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
|
Specifically methylates the guanosine in position 1207 of 16S rRNA in the 30S particle. Yersinia pseudotuberculosis (taxid: 633) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| 255583924 | 256 | n6-DNA-methyltransferase, putative [Rici | 0.996 | 0.996 | 0.753 | 1e-107 | |
| 449438254 | 256 | PREDICTED: hemK methyltransferase family | 0.988 | 0.988 | 0.724 | 1e-106 | |
| 307136455 | 256 | N6-DNA-methyltransferase [Cucumis melo s | 0.988 | 0.988 | 0.724 | 1e-106 | |
| 87241257 | 971 | SAM (and some other nucleotide) binding | 0.964 | 0.254 | 0.726 | 1e-104 | |
| 357469751 | 1026 | Pentatricopeptide repeat-containing prot | 0.968 | 0.241 | 0.723 | 1e-104 | |
| 224053643 | 228 | predicted protein [Populus trichocarpa] | 0.871 | 0.978 | 0.798 | 1e-102 | |
| 255647950 | 234 | unknown [Glycine max] | 0.859 | 0.940 | 0.795 | 1e-100 | |
| 9280295 | 246 | N6-DNA-methyltransferase-like protein [A | 0.871 | 0.906 | 0.735 | 2e-91 | |
| 15231240 | 278 | S-adenosyl-L-methionine-dependent methyl | 0.871 | 0.802 | 0.735 | 3e-91 | |
| 297829886 | 278 | hypothetical protein ARALYDRAFT_318122 [ | 0.843 | 0.776 | 0.754 | 3e-90 |
| >gi|255583924|ref|XP_002532710.1| n6-DNA-methyltransferase, putative [Ricinus communis] gi|223527556|gb|EEF29677.1| n6-DNA-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/256 (75%), Positives = 223/256 (87%), Gaps = 1/256 (0%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
MS R AQIRLVSSHPEVYEPCDDSFALVDALLADRINL++H+P +C EVGCGSGYVITSL
Sbjct: 1 MSSRIAQIRLVSSHPEVYEPCDDSFALVDALLADRINLLDHNPKVCFEVGCGSGYVITSL 60
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
ALML Q++PGV YIATD+NP+AV VTR+TLEAH VHA+LI+TDIASGLEKRL G+VDVMV
Sbjct: 61 ALMLRQQIPGVYYIATDLNPHAVRVTRETLEAHGVHAELISTDIASGLEKRLQGMVDVMV 120
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTPEDEVG EGIASAWAGGENGR VID+IL AD LLS++GWLY+VT+T NDPS
Sbjct: 121 VNPPYVPTPEDEVGCEGIASAWAGGENGRKVIDRILHVADCLLSEKGWLYMVTITCNDPS 180
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKDIVPNKAA-PVGVMDTLL 239
Q+CL+M +KGYA+RIVVQRSTEEE+LHIIKFWRD D Q D K + P VM++L+
Sbjct: 181 QLCLKMRKKGYASRIVVQRSTEEESLHIIKFWRDSDTQFDTKKTLTTNKTIPERVMESLV 240
Query: 240 SQVHRLSFRRSASSNN 255
SQ+ +LSF R+ SSN+
Sbjct: 241 SQLPQLSFWRNGSSNS 256
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438254|ref|XP_004136904.1| PREDICTED: hemK methyltransferase family member 2-like [Cucumis sativus] gi|449529866|ref|XP_004171919.1| PREDICTED: hemK methyltransferase family member 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/254 (72%), Positives = 221/254 (87%), Gaps = 1/254 (0%)
Query: 2 SLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLA 61
S RTAQI LVSSH EVYEPCDDSFALVDALLAD++ L+ HHP LC+E GCGSGYVITSLA
Sbjct: 3 SFRTAQIPLVSSHREVYEPCDDSFALVDALLADQVKLLNHHPTLCLEFGCGSGYVITSLA 62
Query: 62 LMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121
L+LG+E YIATDINP+A+ VT++TLEAH +HA+L+ TDIASGLEKRLAG VDV+VV
Sbjct: 63 LILGKEASATHYIATDINPHAIRVTQETLEAHGLHAELVCTDIASGLEKRLAGSVDVLVV 122
Query: 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181
NPPYVPTPEDEVG++GIASAWAGGENGR+VID+ILP AD LLS +GWLY+VTLTAN+P+Q
Sbjct: 123 NPPYVPTPEDEVGQDGIASAWAGGENGRSVIDRILPVADVLLSDKGWLYMVTLTANNPAQ 182
Query: 182 ICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKDIVPNKAAPVGVMDTLLSQ 241
ICLQM EKGYA+RIVVQRSTEEE+LH+IKFW+D D+Q+D KD +K P V+++L+SQ
Sbjct: 183 ICLQMREKGYASRIVVQRSTEEESLHVIKFWKDADLQVDGKDST-HKTGPGKVVESLISQ 241
Query: 242 VHRLSFRRSASSNN 255
+ RLSF R+ S+ +
Sbjct: 242 LPRLSFWRNNSNTS 255
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136455|gb|ADN34260.1| N6-DNA-methyltransferase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/254 (72%), Positives = 220/254 (86%), Gaps = 1/254 (0%)
Query: 2 SLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLA 61
S RTAQI LVSSH EVYEPCDDSFALVDALLADR+ L+ H+P LC+E GCGSGYVITSLA
Sbjct: 3 SFRTAQIHLVSSHREVYEPCDDSFALVDALLADRVKLLNHNPTLCLEFGCGSGYVITSLA 62
Query: 62 LMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121
L+LG+E YIATDINP+A+ VT++TLEAH +HA+L+ TD+ASGLEKRLAG VDV+VV
Sbjct: 63 LILGKEASATHYIATDINPHAIRVTQETLEAHGLHAELVCTDLASGLEKRLAGSVDVLVV 122
Query: 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181
NPPYVPTPEDEVG++GIASAWAGGENGR+VID+ILP AD LLS +GWLY+VTLTAN+P Q
Sbjct: 123 NPPYVPTPEDEVGQDGIASAWAGGENGRSVIDRILPVADVLLSDKGWLYMVTLTANNPFQ 182
Query: 182 ICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKDIVPNKAAPVGVMDTLLSQ 241
ICLQM EKGYA+RIVVQRSTEEE+LH+IKFW+D D+Q+D KD +K P V+++L+SQ
Sbjct: 183 ICLQMREKGYASRIVVQRSTEEESLHVIKFWKDADLQVDGKDST-HKTGPGRVVESLISQ 241
Query: 242 VHRLSFRRSASSNN 255
+ RLSF R+ S+ N
Sbjct: 242 LPRLSFWRNNSNTN 255
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase small; Tetratricopeptide-like helical [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/252 (72%), Positives = 215/252 (85%), Gaps = 5/252 (1%)
Query: 4 RTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALM 63
+TAQIRLVSSH EVYEPCDDSFALVDALLADR NL+EHHP LCME+GCGSGYVITSLAL+
Sbjct: 723 KTAQIRLVSSHNEVYEPCDDSFALVDALLADRTNLLEHHPALCMEIGCGSGYVITSLALI 782
Query: 64 LGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123
LGQE GV YIATDINP+AV+VTR+T+EAH V A+LI TDIASGLE RLAG++DVMVVNP
Sbjct: 783 LGQEGSGVNYIATDINPHAVKVTRETIEAHGVDAELIITDIASGLENRLAGMIDVMVVNP 842
Query: 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183
PYVPTPE EVG EGI ++WAGGENGR+VID+ILP AD LLS++GWLY+VTLTAN+PS+IC
Sbjct: 843 PYVPTPEAEVGSEGITASWAGGENGRSVIDRILPVADALLSEKGWLYMVTLTANNPSEIC 902
Query: 184 LQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKDIVPNKAAPVGVMDTLLSQVH 243
L+M +KGY ++IVVQRSTEEE+LHIIKFWRD D +D N + G M +LLSQV
Sbjct: 903 LEMRKKGYTSKIVVQRSTEEESLHIIKFWRDLDNGLD-----ENGQSTSGFMGSLLSQVP 957
Query: 244 RLSFRRSASSNN 255
+S+ R +S+N
Sbjct: 958 LISYLRGNNSDN 969
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/253 (72%), Positives = 215/253 (84%), Gaps = 5/253 (1%)
Query: 4 RTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALM 63
+TAQIRLVSSH EVYEPCDDSFALVDALLADR NL+EHHP LCME+GCGSGYVITSLAL+
Sbjct: 778 KTAQIRLVSSHNEVYEPCDDSFALVDALLADRTNLLEHHPALCMEIGCGSGYVITSLALI 837
Query: 64 LGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123
LGQE GV YIATDINP+AV+VTR+T+EAH V A+LI TDIASGLE RLAG++DVMVVNP
Sbjct: 838 LGQEGSGVNYIATDINPHAVKVTRETIEAHGVDAELIITDIASGLENRLAGMIDVMVVNP 897
Query: 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183
PYVPTPE EVG EGI ++WAGGENGR+VID+ILP AD LLS++GWLY+VTLTAN+PS+IC
Sbjct: 898 PYVPTPEAEVGSEGITASWAGGENGRSVIDRILPVADALLSEKGWLYMVTLTANNPSEIC 957
Query: 184 LQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKDIVPNKAAPVGVMDTLLSQVH 243
L+M +KGY ++IVVQRSTEEE+LHIIKFWRD D +D N + G M +LLSQV
Sbjct: 958 LEMRKKGYTSKIVVQRSTEEESLHIIKFWRDLDNGLD-----ENGQSTSGFMGSLLSQVP 1012
Query: 244 RLSFRRSASSNNN 256
+S+ R +S+N
Sbjct: 1013 LISYLRGNNSDNK 1025
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053643|ref|XP_002297908.1| predicted protein [Populus trichocarpa] gi|222845166|gb|EEE82713.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/223 (79%), Positives = 202/223 (90%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
MS +TAQIRL+SSHPEVYEPCDDSFALVDALLADR N+++H P LC+EVGCGSGYVI SL
Sbjct: 6 MSPKTAQIRLMSSHPEVYEPCDDSFALVDALLADRTNILDHCPRLCLEVGCGSGYVIASL 65
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
ALMLGQE+PGV Y ATDINP+A+ VTR+TL+AH V A+L+ DIASGLEKRLAG+VDVMV
Sbjct: 66 ALMLGQELPGVYYFATDINPHALRVTRETLDAHAVDAELMCMDIASGLEKRLAGMVDVMV 125
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTP+ EVGREGIASAWAGGENGR VID+ILP AD+LLS +GWLY+VTLT NDPS
Sbjct: 126 VNPPYVPTPDYEVGREGIASAWAGGENGRIVIDRILPVADRLLSDKGWLYMVTLTTNDPS 185
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKD 223
QICL M +KGYA+RIVVQRSTEEE+LHIIKFWRD DIQ+D K+
Sbjct: 186 QICLLMRKKGYASRIVVQRSTEEESLHIIKFWRDSDIQLDTKE 228
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647950|gb|ACU24432.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/220 (79%), Positives = 197/220 (89%)
Query: 4 RTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALM 63
RTAQI LVSSH EVYEPCDDSFALVDALLADR NL+EHHP LCME+GCGSGYVITSLAL+
Sbjct: 9 RTAQIHLVSSHQEVYEPCDDSFALVDALLADRNNLLEHHPTLCMEIGCGSGYVITSLALI 68
Query: 64 LGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123
LGQEV G+ YIATDINP+AV VT +TLEAH V A+LI TDIASGLE RLAGLVDVMVVNP
Sbjct: 69 LGQEVCGINYIATDINPHAVRVTHETLEAHGVGAELIVTDIASGLEDRLAGLVDVMVVNP 128
Query: 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183
PYVPTPEDEVG EGI S+WAGGENGR+VI+KILP AD+LLS++GWLY+VTLT N+P +IC
Sbjct: 129 PYVPTPEDEVGVEGITSSWAGGENGRSVINKILPVADRLLSEKGWLYMVTLTENNPFEIC 188
Query: 184 LQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKD 223
QM +KGYA++IVVQRSTEEE+LHIIKFWRDFD + + D
Sbjct: 189 HQMRKKGYASKIVVQRSTEEESLHIIKFWRDFDTEANETD 228
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9280295|dbj|BAB01750.1| N6-DNA-methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 164/223 (73%), Positives = 187/223 (83%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
M R A IRLVSSH EVYEPCDDSFALVDALLADR NL+EH+P +CME+GCGSGYVITSL
Sbjct: 1 MPPRIAAIRLVSSHREVYEPCDDSFALVDALLADRTNLIEHNPKICMEIGCGSGYVITSL 60
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
L+L EVPGV Y+A D NP A VT++TLEAH V+AD+I D+A+GLEKRLAG VDV+V
Sbjct: 61 ILLLQNEVPGVHYLAIDTNPIATRVTKETLEAHGVNADVICADLATGLEKRLAGSVDVIV 120
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTPE EVG EGIASAWAGGENGR VIDKILP D LLS++GW YLVTLT+N P+
Sbjct: 121 VNPPYVPTPEYEVGMEGIASAWAGGENGRTVIDKILPVVDLLLSEKGWFYLVTLTSNFPA 180
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKD 223
+ICL M +KGYA+RIVVQRSTEEENL I+KFWRD D + K+
Sbjct: 181 EICLMMRKKGYASRIVVQRSTEEENLVILKFWRDKDEESQDKE 223
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231240|ref|NP_187952.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|18377858|gb|AAL67115.1| AT3g13440/MRP15_7 [Arabidopsis thaliana] gi|20453313|gb|AAM19895.1| AT3g13440/MRP15_7 [Arabidopsis thaliana] gi|332641833|gb|AEE75354.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 164/223 (73%), Positives = 187/223 (83%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
M R A IRLVSSH EVYEPCDDSFALVDALLADR NL+EH+P +CME+GCGSGYVITSL
Sbjct: 33 MPPRIAAIRLVSSHREVYEPCDDSFALVDALLADRTNLIEHNPKICMEIGCGSGYVITSL 92
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
L+L EVPGV Y+A D NP A VT++TLEAH V+AD+I D+A+GLEKRLAG VDV+V
Sbjct: 93 ILLLQNEVPGVHYLAIDTNPIATRVTKETLEAHGVNADVICADLATGLEKRLAGSVDVIV 152
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTPE EVG EGIASAWAGGENGR VIDKILP D LLS++GW YLVTLT+N P+
Sbjct: 153 VNPPYVPTPEYEVGMEGIASAWAGGENGRTVIDKILPVVDLLLSEKGWFYLVTLTSNFPA 212
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKD 223
+ICL M +KGYA+RIVVQRSTEEENL I+KFWRD D + K+
Sbjct: 213 EICLMMRKKGYASRIVVQRSTEEENLVILKFWRDKDEESQDKE 255
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829886|ref|XP_002882825.1| hypothetical protein ARALYDRAFT_318122 [Arabidopsis lyrata subsp. lyrata] gi|297328665|gb|EFH59084.1| hypothetical protein ARALYDRAFT_318122 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 163/216 (75%), Positives = 183/216 (84%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
M R A IRLVSSH EVYEPCDDSFALVDALLADR NL+EH+P +CME+GCGSGYVITSL
Sbjct: 33 MPPRIAAIRLVSSHREVYEPCDDSFALVDALLADRTNLIEHNPKICMEIGCGSGYVITSL 92
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
L+L EVPGV Y+ATD NP A VT++TL+AH V AD+I DIAS LEKRL+G VDV+V
Sbjct: 93 ILLLKNEVPGVHYLATDTNPIATRVTKETLQAHGVDADVICADIASVLEKRLSGSVDVIV 152
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTPE EVG EGIASAWAGGENGR VIDKILP D LLS++GW YLVTLT+N P+
Sbjct: 153 VNPPYVPTPEYEVGMEGIASAWAGGENGRTVIDKILPVVDLLLSEKGWFYLVTLTSNFPA 212
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFD 216
+ICL M +KGYA+RIVVQRSTEEENL I+KFWRD D
Sbjct: 213 EICLMMRKKGYASRIVVQRSTEEENLVILKFWRDKD 248
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| TAIR|locus:2092900 | 278 | AT3G13440 [Arabidopsis thalian | 0.871 | 0.802 | 0.735 | 3.8e-85 | |
| DICTYBASE|DDB_G0292048 | 257 | DDB_G0292048 "N(6)-adenine-spe | 0.777 | 0.774 | 0.447 | 9.1e-45 | |
| UNIPROTKB|A4FV35 | 214 | N6AMT1 "N6AMT1 protein" [Bos t | 0.746 | 0.892 | 0.464 | 3.7e-39 | |
| RGD|1311843 | 214 | N6amt1 "N-6 adenine-specific D | 0.746 | 0.892 | 0.454 | 4.8e-39 | |
| UNIPROTKB|Q9Y5N5 | 214 | N6AMT1 "HemK methyltransferase | 0.746 | 0.892 | 0.438 | 2.4e-37 | |
| UNIPROTKB|E1C233 | 217 | N6AMT1 "Uncharacterized protei | 0.753 | 0.889 | 0.418 | 3.9e-37 | |
| ZFIN|ZDB-GENE-040718-206 | 219 | n6amt1 "N-6 adenine-specific D | 0.753 | 0.881 | 0.413 | 2.1e-36 | |
| WB|WBGene00016341 | 221 | C33C12.9 [Caenorhabditis elega | 0.792 | 0.918 | 0.408 | 7.2e-36 | |
| UNIPROTKB|J9P1B3 | 235 | N6AMT1 "Uncharacterized protei | 0.515 | 0.561 | 0.496 | 1.6e-29 | |
| FB|FBgn0031454 | 224 | CG9960 [Drosophila melanogaste | 0.734 | 0.839 | 0.391 | 5.7e-27 |
| TAIR|locus:2092900 AT3G13440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 164/223 (73%), Positives = 187/223 (83%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
M R A IRLVSSH EVYEPCDDSFALVDALLADR NL+EH+P +CME+GCGSGYVITSL
Sbjct: 33 MPPRIAAIRLVSSHREVYEPCDDSFALVDALLADRTNLIEHNPKICMEIGCGSGYVITSL 92
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
L+L EVPGV Y+A D NP A VT++TLEAH V+AD+I D+A+GLEKRLAG VDV+V
Sbjct: 93 ILLLQNEVPGVHYLAIDTNPIATRVTKETLEAHGVNADVICADLATGLEKRLAGSVDVIV 152
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTPE EVG EGIASAWAGGENGR VIDKILP D LLS++GW YLVTLT+N P+
Sbjct: 153 VNPPYVPTPEYEVGMEGIASAWAGGENGRTVIDKILPVVDLLLSEKGWFYLVTLTSNFPA 212
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKD 223
+ICL M +KGYA+RIVVQRSTEEENL I+KFWRD D + K+
Sbjct: 213 EICLMMRKKGYASRIVVQRSTEEENLVILKFWRDKDEESQDKE 255
|
|
| DICTYBASE|DDB_G0292048 DDB_G0292048 "N(6)-adenine-specific DNA methyltransferase 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 90/201 (44%), Positives = 133/201 (66%)
Query: 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQY 73
+ +VYEP +DS+ +D+L D N+ E P + +E+G GSG+VIT LA +LG + Y
Sbjct: 26 YKDVYEPSEDSYLFIDSLQKDYENIKEMKPFIMLEIGSGSGFVITFLAKLLGND-GSKYY 84
Query: 74 IATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV 133
++TDINP A + KT +NVH D++NT S +E RL G +D+++ NPPYVPTP +EV
Sbjct: 85 MSTDINPKAAIASSKTSIENNVHLDVLNTSFVSSIE-RLKGSIDILLFNPPYVPTPSEEV 143
Query: 134 GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193
GI ++WAGG NGR VIDK+LP +LSK+G+ Y+V + N P Q+ + E G++
Sbjct: 144 NEGGIVASWAGGINGREVIDKLLPQIPSILSKKGFFYIVLVQENKPKQVISILGEYGFSY 203
Query: 194 RIVVQRSTEEENLHIIKFWRD 214
++V +R E L+IIKF+R+
Sbjct: 204 KVVGKRKARNELLYIIKFYRE 224
|
|
| UNIPROTKB|A4FV35 N6AMT1 "N6AMT1 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 91/196 (46%), Positives = 116/196 (59%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+VYEP +D+F L+DAL A L +C+EVG GSG V LA ++G P Y+
Sbjct: 21 DVYEPAEDTFLLLDALEAAAAELTGVE--ICLEVGSGSGVVSAFLASVIG---PQALYMC 75
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TD+NP A T +T + VH I TD+ GL RL VD++V NPPYV TP +EVG
Sbjct: 76 TDVNPEAAACTLETARCNKVHIQPIITDLVKGLLPRLKESVDLLVFNPPYVVTPPEEVGS 135
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GI +AWAGG NGR VID+ LP A LLS RG YLVT+ N+P +I M KG
Sbjct: 136 RGIQAAWAGGRNGREVIDRFLPLAPDLLSPRGLFYLVTIKENNPEEILKIMKTKGLQGTT 195
Query: 196 VVQRSTEEENLHIIKF 211
V+ R +E L ++KF
Sbjct: 196 VLSRQAGQEMLSVLKF 211
|
|
| RGD|1311843 N6amt1 "N-6 adenine-specific DNA methyltransferase 1 (putative)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 89/196 (45%), Positives = 116/196 (59%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+VYEP +D+F L+DAL A L LC+EVG GSG V LA M+G P Y+
Sbjct: 21 DVYEPAEDTFLLLDALEAAAAELAGVE--LCLEVGAGSGVVSAFLASMIG---PQALYMC 75
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TDINP A T +T + VH + TD+ GL RL G VD++V NPPYV TP +EVG
Sbjct: 76 TDINPKAAACTLETARCNRVHLQPVITDLVQGLLPRLKGKVDLLVFNPPYVVTPPEEVGS 135
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GI +AWAGG NGR V+D+ P A +LLS RG YLVT+ N+P +I M +G
Sbjct: 136 HGIEAAWAGGRNGREVMDRFFPLASQLLSPRGLFYLVTIKENNPEEIFKIMKTRGLQGTT 195
Query: 196 VVQRSTEEENLHIIKF 211
+ R +E L +++F
Sbjct: 196 ALCRQAGQETLSVLRF 211
|
|
| UNIPROTKB|Q9Y5N5 N6AMT1 "HemK methyltransferase family member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 86/196 (43%), Positives = 113/196 (57%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+VYEP +D+F L++AL A L +C+EVG GSG V LA M+G P Y+
Sbjct: 21 DVYEPAEDTFLLLNALEAAAAELAGVE--ICLEVGSGSGVVSAFLASMIG---PQALYMC 75
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TDINP A T +T + VH + TD+ GL RL VD++V NPPYV TP EVG
Sbjct: 76 TDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLVFNPPYVVTPPQEVGS 135
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GI +AWAGG+NGR V+D+ P LLS +G YLVT+ N+P +I M KG
Sbjct: 136 HGIEAAWAGGKNGREVMDRFFPLVPDLLSPKGLFYLVTIKENNPEEILKIMKTKGLQGTT 195
Query: 196 VVQRSTEEENLHIIKF 211
+ R +E L ++KF
Sbjct: 196 ALSRQAGQETLSVLKF 211
|
|
| UNIPROTKB|E1C233 N6AMT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 82/196 (41%), Positives = 117/196 (59%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+VYEP +D+F L+DAL D L + +C+E+G GSG V LA ++G Y+
Sbjct: 22 DVYEPAEDTFLLLDALERDAAQLRQAGIDICLEIGSGSGVVSAFLASIIGASA---LYLC 78
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TDINP A T +T + +NVH + TD+ GL RL G+VD+++ NPPYV TP +EV
Sbjct: 79 TDINPMAAYCTLETAQLNNVHLQPVITDLVKGLSPRLNGMVDLLLFNPPYVVTPSEEVQS 138
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GI ++WAGG+ GR V+D++ P LLS G YLVT+ N+P +I M + G
Sbjct: 139 HGIEASWAGGKKGREVMDRVFPLVADLLSTGGLFYLVTIKENNPDEILETMTKHGLEGTR 198
Query: 196 VVQRSTEEENLHIIKF 211
++ R +E L I+KF
Sbjct: 199 LLSRQAGQEMLTILKF 214
|
|
| ZFIN|ZDB-GENE-040718-206 n6amt1 "N-6 adenine-specific DNA methyltransferase 1 (putative)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 81/196 (41%), Positives = 115/196 (58%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
EVYEP +DSF L+DAL D L + P +C+EVG GSG + LA ++G + YI
Sbjct: 17 EVYEPAEDSFLLMDALEKDADRLKDSRPCVCLEVGSGSGVISAFLASLIGAQA---LYIC 73
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TD+N A + + +T +N+H + TD+ L RL G VDV+V NPPYV TP +EVG
Sbjct: 74 TDVNADAAQCSMQTSILNNLHVQPVVTDLVECLLPRLNGKVDVLVFNPPYVATPSEEVGS 133
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
G+ ++WAGG +GR V+++ P LLS+ G YLVT++ NDP I + G +
Sbjct: 134 HGVEASWAGGLHGREVMNRFFPMIPDLLSEHGLFYLVTVSDNDPEGIVDLLARSGLDGHL 193
Query: 196 VVQRSTEEENLHIIKF 211
+ R E L I++F
Sbjct: 194 CLTRQAGRETLTILRF 209
|
|
| WB|WBGene00016341 C33C12.9 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 87/213 (40%), Positives = 131/213 (61%)
Query: 1 MSLRTAQIRL--VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVIT 58
MS+ T Q RL + +H +VYEP +D+F L+DA+ D + P L +E+GCGSG V T
Sbjct: 1 MSMPTPQYRLQAIRAH-DVYEPAEDTFLLIDAIEKDIKEIRSRDPKLVLEIGCGSGVVST 59
Query: 59 SLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118
+ LG V V ATD+NP+A++VT +T + +++ D++ TD+ +GLE L G VDV
Sbjct: 60 FVNQALGGNVTSV---ATDLNPHALDVTLETAKLNDIKIDVVRTDLFAGLEN-LLGKVDV 115
Query: 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178
++ NPPYVPT DE + I +AGG GR+ +D++LP +LLS RG YLV L +ND
Sbjct: 116 LLFNPPYVPT--DEEPKSNIELTYAGGRTGRSTLDRLLPRVPELLSPRGVFYLVALHSND 173
Query: 179 PSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211
+ + E+ + ++R E+L+I+KF
Sbjct: 174 IPALLKEHSEQ-MTVSVSMERRCGIEHLYILKF 205
|
|
| UNIPROTKB|J9P1B3 N6AMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 67/135 (49%), Positives = 85/135 (62%)
Query: 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104
+C+EVG GSG V LA M+G P Y+ TDINP A T +T +NV + TD+
Sbjct: 37 ICLEVGSGSGVVSAFLASMIG---PQALYMCTDINPEAAACTLETAHCNNVSIQPVITDL 93
Query: 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164
+GL RL VD++V NPPYV TP +EVG G+ +AWAGG NGR V+D+ P A LLS
Sbjct: 94 VNGLLPRLKEKVDLLVFNPPYVVTPPEEVGSHGVEAAWAGGRNGREVMDRFFPLAPDLLS 153
Query: 165 KRGWLYLVTLTANDP 179
RG YLVT+ N+P
Sbjct: 154 PRGLFYLVTIKENNP 168
|
|
| FB|FBgn0031454 CG9960 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 83/212 (39%), Positives = 116/212 (54%)
Query: 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQY-IA 75
VYEP +DSF L+DAL D L P LC+E+G GSG +IT+LA +++ G +A
Sbjct: 17 VYEPAEDSFLLLDALEKDLEYLDRLQPSLCVELGSGSGVIITALA----KKLAGFSLCLA 72
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TDINP A TR+T + D I +A L R VDV++ NPPYV T ++E+
Sbjct: 73 TDINPKACNATRRTATRNGARLDSIRCSLADALRPRS---VDVLLFNPPYVVTSDEELQT 129
Query: 136 EGIAS------------AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183
+ S +WAGG++GR V D +L D +LS RG LYL+ L N P +I
Sbjct: 130 QQFDSHSESSTDRNLVFSWAGGQDGRRVTDILLKQLDDILSPRGVLYLLLLRENKPEEI- 188
Query: 184 LQMMEKGYAARIV--VQRSTEEENLHIIKFWR 213
++ +E G R V ++R E+L I+K R
Sbjct: 189 IKYLE-GLQFRAVKFMERRIPGEHLCILKVTR 219
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9UT94 | MTQ2_SCHPO | 2, ., 1, ., 1, ., - | 0.3348 | 0.8007 | 0.8874 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 256 | |||
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 8e-36 | |
| TIGR00537 | 179 | TIGR00537, hemK_rel_arch, HemK-related putative me | 9e-32 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 6e-29 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 2e-22 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 6e-18 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 2e-17 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 2e-13 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 2e-12 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 5e-09 | |
| TIGR00536 | 284 | TIGR00536, hemK_fam, HemK family putative methylas | 5e-09 | |
| PRK11805 | 307 | PRK11805, PRK11805, N5-glutamine S-adenosyl-L-meth | 9e-09 | |
| TIGR03704 | 251 | TIGR03704, PrmC_rel_meth, putative protein-(glutam | 2e-08 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 6e-08 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 3e-07 | |
| TIGR03533 | 284 | TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m | 7e-07 | |
| PRK01544 | 506 | PRK01544, PRK01544, bifunctional N5-glutamine S-ad | 1e-06 | |
| PRK09489 | 342 | PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltr | 1e-06 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-05 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 5e-05 | |
| PRK14966 | 423 | PRK14966, PRK14966, unknown domain/N5-glutamine S- | 8e-05 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 2e-04 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 3e-04 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 3e-04 | |
| TIGR00308 | 374 | TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltran | 3e-04 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 3e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.001 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 0.003 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 0.004 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 8e-36
Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 23/205 (11%)
Query: 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQY 73
+ EVYEP +DSF LLA+ + VL EVG GSG V A G +
Sbjct: 2 NDEVYEPAEDSF-----LLAENAVDKKGDRVL--EVGTGSGIVAIVAAKN------GKKV 48
Query: 74 IATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE 130
+ DINPYAVE + + +N+ ++I +D+ DV++ NPPY+PT E
Sbjct: 49 VGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDK---FDVILFNPPYLPTEE 105
Query: 131 DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV--TLTANDPSQICLQMME 188
+E + + A +GG++GR VID+ L + L G + L+ +LT D ++ + +
Sbjct: 106 EEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGED--EVLEYLEK 163
Query: 189 KGYAARIVVQRSTEEENLHIIKFWR 213
G+ A +V + E L +++ +
Sbjct: 164 LGFEAEVVAEEKFPFEELIVLELVK 188
|
Length = 188 |
| >gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 9e-32
Identities = 63/196 (32%), Positives = 98/196 (50%), Gaps = 17/196 (8%)
Query: 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT 76
VYEP +DS L NL E P +E+G G+G V L G + T
Sbjct: 1 VYEPAEDSLLLEA-------NLRELKPDDVLEIGAGTGLVAIRLK------GKGKCILTT 47
Query: 77 DINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGRE 136
DINP+AV+ R+ + +NV D++ TD+ G+ + DV++ NPPY+P +D +
Sbjct: 48 DINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKF----DVILFNPPYLPLEDDLRRGD 103
Query: 137 GIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196
+ A GG++GR VID+ L ++L + G + L+ + N ++ E+G+ IV
Sbjct: 104 WLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163
Query: 197 VQRSTEEENLHIIKFW 212
+R E L IK W
Sbjct: 164 AERGLFFEELFAIKAW 179
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-29
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 17/162 (10%)
Query: 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYI 74
V P D+ LV+A LA + +++G GSG +A+ L +E P + I
Sbjct: 87 EGVLIPRPDTELLVEAALAL----LLQLDKRILDLGTGSGA----IAIALAKEGPDAEVI 138
Query: 75 ATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV 133
A DI+P A+ + R+ E + + ++ +D+ L + D++V NPPY+P + E+
Sbjct: 139 AVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGK----FDLIVSNPPYIPAEDPEL 194
Query: 134 GREGI----ASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171
E + A GG +G V +IL A +L G L L
Sbjct: 195 LPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236
|
Length = 280 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-22
Identities = 62/186 (33%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYI 74
P VY P +D+ L DAL A+ L VL ++ GSG + + A V
Sbjct: 13 PGVYRPQEDTQLLADALAAE--GLGPGRRVL--DLCTGSGALAVAAAAAGAGSV-----T 63
Query: 75 ATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVG 134
A DI+ AV R V D+ D A +E R DV+V NPPYVP P D
Sbjct: 64 AVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRP---FDVVVSNPPYVPAPPDAPP 120
Query: 135 REGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194
G A AW G +GRAV+D++ +A LL+ G L LV + + ++ E G A
Sbjct: 121 SRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE 180
Query: 195 IVVQRS 200
+V +
Sbjct: 181 VVASQW 186
|
Length = 223 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 6e-18
Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYI 74
P V P ++ LV+A L ++ P+ +++G GSG ++AL L +E P +
Sbjct: 64 PGVLIPRPETEELVEAALE----RLKKGPLRVLDLGTGSG----AIALALAKERPDARVT 115
Query: 75 ATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-DE 132
A DI+P A+ V RK + + + +D L G D++V NPPY+P +
Sbjct: 116 AVDISPEALAVARKNAARLGLDNVEFLQSDWFEPLPG---GKFDLIVSNPPYIPEADIHL 172
Query: 133 VGREGI----ASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171
+ E A GGE+G +I+ A +LL GWL L
Sbjct: 173 LDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-17
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
LV+ L + + L E VL ++G GSG ++AL L +E P + A DI+P A+ V
Sbjct: 96 LVEWAL-EALLLKEPLRVL--DLGTGSG----AIALALAKERPDAEVTAVDISPEALAVA 148
Query: 87 RKTLEAHN-VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-DEVGREGI----AS 140
R+ + + + D L G D++V NPPY+P + + E
Sbjct: 149 RRNAKHGLGARVEFLQGDWFEPLPG---GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHL 205
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYL 171
A GGE+G +I+ A + L GWL L
Sbjct: 206 ALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236
|
Length = 275 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-13
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 34/165 (20%)
Query: 13 SHPEVYEPCDDSFALVD---ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP 69
+ P V+ S +D LL + VL ++GCG G L L + P
Sbjct: 6 TLPGVF-----SHGRLDIGSRLLLSHLPKPLGGKVL--DLGCGYGV----LGAALAKRSP 54
Query: 70 GVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPT 128
++ DIN A+E R L A+ + ++ +D+ S +E G D+++ NPP+
Sbjct: 55 DLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAVE---PGKFDLIISNPPFH-- 109
Query: 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173
AG V + + A + L G L++V
Sbjct: 110 --------------AGKATDYDVAQRFIAGAARHLKPGGELWIVA 140
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-12
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLI 100
++ G GSG + + A P + + +++P A + R+ L + ++
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAG----PDARVVGVELDPEAAALARRRLALAGLAPRVRVV 56
Query: 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160
D LE G D+++ NPPY P D ++ R + D+ L +A
Sbjct: 57 VGDARELLELP-DGSFDLVLGNPPYGPRAGDP-------------KDNRDLYDRFLAAAL 102
Query: 161 KLLSKRGWLYLVT 173
+LL G L ++T
Sbjct: 103 RLLKPGGVLVVIT 115
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-09
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 13 SHPEVYEPCDDSFALVDA---LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP 69
+ P V+ S +D LL + + VL ++GCG G L L+L ++ P
Sbjct: 133 TLPGVF-----SRDKLDKGSRLLLETLPPDLGGKVL--DLGCGYGV----LGLVLAKKSP 181
Query: 70 GVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DIASGLEKRLAGLVDVMVVNPPYVPT 128
+ D+N AVE RK L A+ V + ++ +E + D+++ NPP+
Sbjct: 182 QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF----DLIISNPPFH-- 235
Query: 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172
AG ++ +I+ +A + L G L++V
Sbjct: 236 --------------AGKAVVHSLAQEIIAAAARHLKPGGELWIV 265
|
Length = 300 |
| >gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-09
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 21/155 (13%)
Query: 26 ALVDALLADRINLVEHHPVL-CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84
LV+ LA L+ +P+L +++G GSG + +LA E P + IA DI+P A+
Sbjct: 100 ELVEKALAS---LISQNPILHILDLGTGSGCIALALAY----EFPNAEVIAVDISPDALA 152
Query: 85 VTRKTLE----AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGRE 136
V + E H V I +++ L + +D++V NPPY+ + V R
Sbjct: 153 VAEENAEKNQLEHRVE--FIQSNLFEPLAGQ---KIDIIVSNPPYIDEEDLADLPNVVRF 207
Query: 137 GIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171
A GG++G ++ +I+ A L G+L
Sbjct: 208 EPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284 |
| >gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 9e-09
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 25/152 (16%)
Query: 31 LLADRI-NLVEHHPV-----LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84
L+ D +E PV LC GSG +A+ P + A DI+P A+
Sbjct: 120 LIEDGFAPWLEDPPVTRILDLC----TGSG----CIAIACAYAFPDAEVDAVDISPDALA 171
Query: 85 VTRKTLEAHNVHAD--LINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREG 137
V +E H + LI +D+ + L R D++V NPPYV + E E
Sbjct: 172 VAEINIERHGLEDRVTLIESDLFAALPGR---RYDLIVSNPPYVDAEDMADLPAEYRHEP 228
Query: 138 IASAWAGGENGRAVIDKILPSADKLLSKRGWL 169
A A G++G ++ +IL A L++ G L
Sbjct: 229 -ELALAAGDDGLDLVRRILAEAPDYLTEDGVL 259
|
Length = 307 |
| >gnl|CDD|234318 TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHP--VLCMEVGCGSGYVITSLALMLGQEV 68
++ P V+ P + LVD A L ++ +++ CGSG ++ L +
Sbjct: 57 IAVDPGVFVPRRRTEFLVDEAAA----LARPRSGTLVVVDLCCGSG----AVGAALAAAL 108
Query: 69 PGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLEKRLAGLVDVMVVNPPYV 126
G++ A DI+P AV R+ L VH D+ L L G VD++ N PYV
Sbjct: 109 DGIELHAADIDPAAVRCARRNLADAGGTVHEG----DLYDALPTALRGRVDILAANAPYV 164
Query: 127 PTPEDEVG 134
PT D +
Sbjct: 165 PT--DAIA 170
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 251 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-08
Identities = 48/179 (26%), Positives = 68/179 (37%), Gaps = 50/179 (27%)
Query: 41 HHP--VLCME--------------VGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84
HP LC+E VGCGSG +++ AL LG + + DI+P AVE
Sbjct: 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSG-ILSIAALKLGAA----KVVGIDIDPLAVE 196
Query: 85 VTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAG 144
RK E + V LE+ + G DV+V N A
Sbjct: 197 SARKNAELNQVS--DRLQVKLIYLEQPIEGKADVIVAN------------------ILAE 236
Query: 145 GENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEE 203
VI ++ P +L+ GWL L + +C E+G+ +V R EE
Sbjct: 237 ------VIKELYPQFSRLVKPGGWLILSGILETQAQSVC-DAYEQGFT--VVEIRQREE 286
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-07
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 48 EVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK-TLEAHNVHADLINTDIAS 106
++GCG+G + +LA PG + DI+P A+E+ RK + +++ D
Sbjct: 4 DLGCGTGALALALA-----SGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58
Query: 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166
+ DV++ +PP ED + + L A +LL
Sbjct: 59 LPPEADES-FDVIISDPPLHHLVED--------------------LARFLEEARRLLKPG 97
Query: 167 GWLYLVTLTA 176
G L L + A
Sbjct: 98 GVLVLTLVLA 107
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-07
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 31 LLADRI-NLVEHHPVL-CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88
L+ D +E PV +++ GSG +A+ P + A DI+P A+ V
Sbjct: 108 LIEDGFAPWLEPEPVKRILDLCTGSG----CIAIACAYAFPEAEVDAVDISPDALAVAEI 163
Query: 89 TLEAHNV--HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASA 141
+E H + LI +D+ + L R D++V NPPYV + E E A
Sbjct: 164 NIERHGLEDRVTLIQSDLFAALPGRK---YDLIVSNPPYVDAEDMADLPAEYHHEP-ELA 219
Query: 142 WAGGENGRAVIDKILPSADKLLSKRGWL 169
A GE+G ++ +IL A L++ G L
Sbjct: 220 LASGEDGLDLVRRILAEAADHLNENGVL 247
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284 |
| >gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDI 104
+E+G GSG + SL E+P IATDI+ A+EV + + V +I+++
Sbjct: 143 LELGTGSGCIAISLLC----ELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW 198
Query: 105 ASGLEKRLAGLVDVMVVNPPYVPTPE 130
+EK+ D +V NPPY+ E
Sbjct: 199 FENIEKQ---KFDFIVSNPPYISHSE 221
|
Length = 506 |
| >gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G L+ +L + P ++ +D++ A+E +R TL A+ + ++ +++ S
Sbjct: 201 LDVGCGAGV----LSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R D+++ NPP+
Sbjct: 257 DIKGRF----DMIISNPPF 271
|
Length = 342 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 24/154 (15%)
Query: 28 VDA-LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
DA LLA + +++G G+G +L L+L Q + + +I A E+
Sbjct: 31 TDAILLAAFAPVP--KKGRILDLGAGNG----ALGLLLAQRTEKAKIVGVEIQEEAAEMA 84
Query: 87 RKTLE----AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAW 142
++ + + +I DI L+ + D+++ NPPY A A
Sbjct: 85 QRNVALNPLEERIQ--VIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIA- 141
Query: 143 AGGENGRAVI----DKILPSADKLLSKRGWLYLV 172
R I + ++ +A KLL G L V
Sbjct: 142 ------RHEITLDLEDLIRAAAKLLKPGGRLAFV 169
|
Length = 248 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA----HNVHADLINT 102
+++GCG+G L L + +PG++Y DI+P A+E + L A V L
Sbjct: 1 LDIGCGTGT----LLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVL 56
Query: 103 DIASGLEKRLAGLVDVMVVN 122
D DV+V +
Sbjct: 57 DAIDLDPGS----FDVVVAS 72
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-05
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 33/100 (33%)
Query: 41 HHP--VLCME--------------VGCGSGYVITS-LALMLG-QEVPGVQYIATDINPYA 82
HP LC+E VGCGSG I + A LG ++V +A DI+P A
Sbjct: 102 THPTTRLCLEALEKLVLPGKTVLDVGCGSG--ILAIAAAKLGAKKV-----LAVDIDPQA 154
Query: 83 VEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122
VE R+ E + V +N + G K DV+V N
Sbjct: 155 VEAARENAELNGVE---LNVYLPQGDLK-----ADVIVAN 186
|
Length = 250 |
| >gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 8e-05
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 20/123 (16%)
Query: 9 RLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEV 68
R + +P V P ++ LV+A+LA L E+ V ++G GSG V ++AL E
Sbjct: 223 RRFAVNPNVLIPRPETEHLVEAVLA---RLPENGRV--WDLGTGSGAVAVTVAL----ER 273
Query: 69 PGVQYIATDINPYAVEVTRKT-----LEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123
P A+DI+P A+E RK H +TD+ S G D++V NP
Sbjct: 274 PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPS------EGKWDIIVSNP 327
Query: 124 PYV 126
PY+
Sbjct: 328 PYI 330
|
Length = 423 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 24/99 (24%)
Query: 41 HHP--VLCME--------------VGCGSGYVITSLA-LMLGQEVPGVQYIATDINPYAV 83
HP LC+E VGCGSG I ++A LG + + + DI+P AV
Sbjct: 145 THPTTSLCLEALEKLLKKGKTVLDVGCGSG--ILAIAAAKLGAK----KVVGVDIDPQAV 198
Query: 84 EVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122
E R+ + V L+ LE G DV+V N
Sbjct: 199 EAARENARLNGVE-LLVQAKGFLLLEVPENGPFDVIVAN 236
|
Length = 300 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 3e-04
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104
+++GCG+G V+ L + P DI+ A+E+ ++ L + D
Sbjct: 2 LDLGCGTGRVL----RALARAGP-SSVTGVDISKEALELAKERLRDKGPKVRFVVADA 54
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NVHADLINTD 103
+++GCG+GY+ LA LG PG + + DI+ A+E ++ + NV I D
Sbjct: 8 LDLGCGTGYLTFILAEKLG---PGAEVVGIDISEEAIEKAKENAKKLGYENVE--FIQGD 62
Query: 104 IASGLEKRLAGL-VDVMVVNPP 124
I + +L DV++ N
Sbjct: 63 IEELPQLQLEDNSFDVVISNEV 84
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|232913 TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 34/148 (22%)
Query: 67 EVPGV-QYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMVVNPP 124
E+ GV + A DINP AVE + +E ++V + ++ N D A+ L R V+ ++P
Sbjct: 65 EIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRN-RKFHVIDIDPF 123
Query: 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
P P + SA + ++RG L+ +TA D S +C
Sbjct: 124 GTPAP-------------------------FVDSAIQASAERG---LLLVTATDTSALCG 155
Query: 185 QMMEKG---YAARIVVQRSTEEENLHII 209
+ Y A V S E L ++
Sbjct: 156 NYPKSCLRKYGANPVKTESCHESALRLL 183
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes [Protein synthesis, tRNA and rRNA base modification]. Length = 374 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 29/100 (29%)
Query: 41 HHP--VLCME--------------VGCGSGYVITSLA-LMLG-QEVPGVQYIATDINPYA 82
HP LC+E VGCGSG I ++A L LG ++V + DI+P A
Sbjct: 143 THPTTALCLEALESLVKPGETVLDVGCGSG--ILAIAALKLGAKKV-----VGVDIDPVA 195
Query: 83 VEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122
V ++ E + V A L E G DV+V N
Sbjct: 196 VRAAKENAELNGVEAQLEVYLPGDLPE----GKADVVVAN 231
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 48 EVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIAS 106
++GCG+G SLA+ L + PG + D++P +E+ R+ + + D
Sbjct: 7 DIGCGTG----SLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPD 62
Query: 107 GLE 109
L+
Sbjct: 63 ALD 65
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 17/105 (16%)
Query: 30 ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89
A + + L VL E+G GSGY LA ++G+ V + + E R+
Sbjct: 62 ARMLQLLELKPGDRVL--EIGTGSGYQAAVLARLVGRVV------SIERIEELAEQARRN 113
Query: 90 LE---AHNVHADLINTDIASGLEKRLAGLVDVMVVN--PPYVPTP 129
LE NV + + D + G + D ++V P VP
Sbjct: 114 LETLGYENVT--VRHGDGSKGWPEE--APYDRIIVTAAAPEVPEA 154
|
Length = 209 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAV 83
++ L A L + VL ++G G+G + AL+ V V DI+P A+
Sbjct: 32 AYILWVAYLRGDLEGKT---VL--DLGAGTGILAIGAALLGASRVLAV-----DIDPEAL 81
Query: 84 EVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPY 125
E+ R E + + D+ G D +++NPP+
Sbjct: 82 EIARANAEELLGDVEFVVADV-----SDFRGKFDTVIMNPPF 118
|
Length = 198 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.96 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.96 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.95 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.95 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.94 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.94 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.93 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.93 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.92 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.92 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.91 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.91 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.91 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.9 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.89 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.89 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.88 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.83 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.82 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.81 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.79 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.79 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.78 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.77 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.76 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.75 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.74 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.74 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.74 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.73 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.73 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.73 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.72 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.72 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.72 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.7 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.69 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.69 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.69 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.68 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.68 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.68 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.68 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.68 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.67 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.67 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.67 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.67 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.66 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.66 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.66 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.65 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.65 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.65 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.65 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.64 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.64 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.64 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.63 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.63 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.63 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.63 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.63 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.63 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.62 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.62 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.62 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.62 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.61 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.61 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.61 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.6 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.6 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.6 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.59 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.59 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.59 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.59 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.58 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.58 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.58 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.58 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.58 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.58 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.57 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.56 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 99.56 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.56 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.55 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.55 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.55 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.55 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.54 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.54 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.54 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.54 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.53 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.53 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.53 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.53 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.53 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.52 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.52 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.52 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.52 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.51 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.51 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.51 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.51 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.51 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.5 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.48 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.48 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.48 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.47 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.47 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.47 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.47 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.47 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.47 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.46 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.46 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.45 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 99.45 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.45 | |
| PLN02476 | 278 | O-methyltransferase | 99.45 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.44 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.44 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.44 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.44 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.43 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.43 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.43 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.42 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.42 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.42 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.42 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.42 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.41 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.41 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.41 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.39 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.39 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.39 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 99.38 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.38 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.38 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.38 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.38 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.38 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.37 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.37 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.37 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.37 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 99.36 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.35 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.35 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.34 | |
| PLN02366 | 308 | spermidine synthase | 99.34 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.33 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.32 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 99.32 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.31 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.3 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.3 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 99.28 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.28 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.28 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.28 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.27 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.25 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.24 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 99.24 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.23 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.22 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 99.2 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.18 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.18 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.17 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.17 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.16 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.15 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 99.12 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.12 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 99.1 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.05 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 99.04 | |
| PLN02823 | 336 | spermine synthase | 99.04 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.0 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.0 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.99 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.99 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.98 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.97 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.95 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.94 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 98.93 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.92 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.92 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.91 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.9 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.87 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.86 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.85 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.82 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.81 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.81 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.8 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.8 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 98.8 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.8 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.79 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.79 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.75 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.72 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.71 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.69 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.67 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.65 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.64 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.61 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.6 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.58 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.58 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.57 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.57 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.55 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 98.54 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.51 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.5 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.49 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.42 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.39 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.36 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 98.33 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 98.31 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 98.3 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.3 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.28 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.26 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.26 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.22 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.21 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.21 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.2 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.2 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.18 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.16 | |
| PRK13699 | 227 | putative methylase; Provisional | 98.15 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.14 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.96 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.94 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.94 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.93 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.9 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.9 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.89 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.87 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.87 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.85 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.83 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.76 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.75 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 97.73 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.66 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.65 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 97.6 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.59 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 97.56 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.5 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.46 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.44 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.4 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.35 | |
| PRK13699 | 227 | putative methylase; Provisional | 97.31 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 97.26 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.23 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.23 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.16 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 97.15 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 97.14 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 97.12 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.11 | |
| PF07669 | 106 | Eco57I: Eco57I restriction-modification methylase; | 97.01 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.96 | |
| PHA01634 | 156 | hypothetical protein | 96.94 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.93 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.89 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.84 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.78 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.69 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.68 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.67 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.61 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.6 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.54 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 96.52 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.5 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 96.49 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 96.39 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.27 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 95.87 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 95.8 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 95.69 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 95.66 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.65 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.63 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 95.58 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.52 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.44 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.4 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 95.34 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 95.32 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.98 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.93 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 94.76 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 94.26 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 94.24 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.12 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 93.98 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 93.8 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 93.64 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 93.57 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.52 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.42 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.3 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 93.25 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 93.16 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.06 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.92 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 92.8 | |
| KOG3350 | 217 | consensus Uncharacterized conserved protein [Funct | 92.72 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 92.45 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 92.44 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 92.37 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 92.32 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 91.85 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 91.81 | |
| PRK08643 | 256 | acetoin reductase; Validated | 91.6 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.51 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 91.38 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 91.34 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 91.31 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 91.04 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.95 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 90.84 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 90.8 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 90.79 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 90.75 | |
| PLN02494 | 477 | adenosylhomocysteinase | 90.73 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 90.71 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 90.5 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 90.35 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 90.16 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.16 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 90.12 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 89.9 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.79 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 89.72 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 89.7 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 89.59 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 89.59 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 89.51 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 89.47 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 88.86 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 88.86 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 88.76 | |
| KOG4174 | 282 | consensus Uncharacterized conserved protein [Funct | 88.67 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 88.58 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 88.41 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 88.41 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.41 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.3 | |
| TIGR00853 | 95 | pts-lac PTS system, lactose/cellobiose family IIB | 88.23 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 88.22 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 88.19 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 88.17 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 88.08 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 88.07 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 87.97 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 87.96 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 87.96 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 87.88 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 87.83 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 87.81 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 87.78 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.73 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 87.72 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 87.71 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 87.65 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 87.58 | |
| PF05063 | 176 | MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladen | 87.56 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 87.41 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 87.28 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.89 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 86.77 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 86.75 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 86.74 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 86.71 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.55 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.52 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 86.48 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 86.37 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 86.36 | |
| PRK09590 | 104 | celB cellobiose phosphotransferase system IIB comp | 86.28 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 86.26 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 86.15 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 86.03 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 85.74 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 85.73 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.64 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 85.53 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.47 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.14 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 85.03 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 84.98 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 84.87 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.68 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 84.59 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 84.52 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 84.48 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 84.29 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 84.23 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.19 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 84.14 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.11 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 83.97 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 83.96 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 83.96 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 83.93 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 83.86 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 83.78 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 83.59 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 83.59 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 83.58 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.51 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 83.46 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 83.33 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 83.22 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 83.07 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 82.89 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 82.86 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 82.6 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 82.58 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 82.46 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 82.32 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 82.31 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 82.3 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 82.29 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 82.25 | |
| PF08468 | 155 | MTS_N: Methyltransferase small domain N-terminal; | 82.02 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 81.92 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 81.66 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 81.61 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 81.59 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 81.51 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 81.43 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 81.38 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 81.37 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 81.31 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 81.14 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 81.09 | |
| COG4121 | 252 | Uncharacterized conserved protein [Function unknow | 81.08 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 81.03 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 80.97 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.8 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 80.73 | |
| COG1743 | 875 | Adenine-specific DNA methylase containing a Zn-rib | 80.64 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 80.43 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 80.05 |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=179.16 Aligned_cols=194 Identities=52% Similarity=0.891 Sum_probs=179.7
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
..++|.|..||+.+.|.+.....++....+..++|||||+|.++..+++.+. |++...++|+||.+.+...+.+..|
T Consensus 15 f~dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~---~~~~~latDiNp~A~~~Tl~TA~~n 91 (209)
T KOG3191|consen 15 FSDVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIG---PQALYLATDINPEALEATLETARCN 91 (209)
T ss_pred hhhccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcC---CCceEEEecCCHHHHHHHHHHHHhc
Confidence 4499999999999999998888777666789999999999999988888764 7889999999999999999999999
Q ss_pred CCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 94 ~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+...++++.|+.+.+.. ++.|+++.||||.+.+..+....+...+|.||.+|+.+.+.++.++-.+|.|.|.++++.
T Consensus 92 ~~~~~~V~tdl~~~l~~---~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 92 RVHIDVVRTDLLSGLRN---ESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCccceeehhHHhhhcc---CCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 98889999999888765 899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 174 LTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 174 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
...+...++.++++..||.....+.+....+...++++.+
T Consensus 169 ~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 169 LRANKPKEILKILEKKGYGVRIAMQRKAGGETLSILKFTR 208 (209)
T ss_pred hhhcCHHHHHHHHhhcccceeEEEEEecCCceEEEEEEEe
Confidence 9888999999999999999999999999999999999876
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=197.68 Aligned_cols=187 Identities=26% Similarity=0.379 Sum_probs=153.5
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.+++|+||++|+.+++.++..... ... +|||+|||||++++.++.. .|.+.|+|+|+|+.+++.|++|
T Consensus 82 ~~~v~~~vliPr~dTe~Lve~~l~~~~~---~~~-~ilDlGTGSG~iai~la~~----~~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 82 RFKVDEGVLIPRPDTELLVEAALALLLQ---LDK-RILDLGTGSGAIAIALAKE----GPDAEVIAVDISPDALALAREN 153 (280)
T ss_pred eeeeCCCceecCCchHHHHHHHHHhhhh---cCC-cEEEecCChHHHHHHHHhh----CcCCeEEEEECCHHHHHHHHHH
Confidence 4789999999999999999998744332 122 8999999999999988888 6788999999999999999999
Q ss_pred HHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCC----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 90 LEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..+++.. .++.+|+++... ++||+|++||||.+... +++...++..++++|.+|.+++..++..+.++|+
T Consensus 154 a~~~~l~~~~~~~~dlf~~~~----~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~ 229 (280)
T COG2890 154 AERNGLVRVLVVQSDLFEPLR----GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK 229 (280)
T ss_pred HHHcCCccEEEEeeecccccC----CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC
Confidence 99999733 555557666533 48999999999999872 2345678999999888999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcC-CcEEEEEecCCCCccEEEE
Q 025207 165 KRGWLYLVTLTANDPSQICLQMMEKG-YAARIVVQRSTEEENLHII 209 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~l~ 209 (256)
|||.+++ ..+.++...+.+++.+.+ +.............++...
T Consensus 230 ~~g~l~l-e~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 230 PGGVLIL-EIGLTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred CCcEEEE-EECCCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 9999888 566788899999999999 5555566666666555443
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=198.81 Aligned_cols=189 Identities=23% Similarity=0.280 Sum_probs=160.3
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.|+++.||++|+.+++.+++.+. ++.+|||+|||+|.+++.++.. .++++++|+|+|+.+++.|++|+
T Consensus 225 f~V~p~vLIPRpeTE~LVe~aL~~l~-----~~~rVLDLGcGSG~IaiaLA~~----~p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 225 FAVNPNVLIPRPETEHLVEAVLARLP-----ENGRVWDLGTGSGAVAVTVALE----RPDAFVRASDISPPALETARKNA 295 (423)
T ss_pred EEeCCCccCCCccHHHHHHHhhhccC-----CCCEEEEEeChhhHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHH
Confidence 77999999999999999999988753 4579999999999999888876 57789999999999999999999
Q ss_pred HHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc----ccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 91 EAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED----EVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 91 ~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
..++.+.+++++|+.+...+ ..++||+|++||||...... +....++..++.++.+|...+..++..+.+.|+||
T Consensus 296 ~~~g~rV~fi~gDl~e~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkpg 374 (423)
T PRK14966 296 ADLGARVEFAHGSWFDTDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEG 374 (423)
T ss_pred HHcCCcEEEEEcchhccccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCC
Confidence 98887668999998664221 13579999999999876542 23356888999999999999999999999999999
Q ss_pred eEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEE
Q 025207 167 GWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIK 210 (256)
Q Consensus 167 G~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 210 (256)
|.+++ ..+..+.+.+.+.+.+.||....+.....+.+++.+..
T Consensus 375 G~lil-EiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 375 GFLLL-EHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred cEEEE-EECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 99887 45677788999999999998888888888888876643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=206.26 Aligned_cols=195 Identities=23% Similarity=0.296 Sum_probs=163.1
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhccc------------------c---cCCCCEEEEecccccHHHHHHHHHhcccC
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINL------------------V---EHHPVLCMEVGCGSGYVITSLALMLGQEV 68 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~------------------~---~~~~~~VLDlGcG~G~~~~~la~~l~~~~ 68 (256)
.|.+.|+|++||++|+.+++++++.+... . ..++.+|||+|||+|++++.++.. .
T Consensus 85 ~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~----~ 160 (506)
T PRK01544 85 EFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCE----L 160 (506)
T ss_pred EEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHH----C
Confidence 37899999999999999999998765310 0 113578999999999999988876 5
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCc-----ccccccchhh
Q 025207 69 PGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-----EVGREGIASA 141 (256)
Q Consensus 69 ~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-----~~~~~~~~~~ 141 (256)
|+++++|+|+|+.+++.|++|+..+++.. .++.+|+.+... .++||+|++||||...... ++...++..+
T Consensus 161 p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~---~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~A 237 (506)
T PRK01544 161 PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE---KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIA 237 (506)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc---CCCccEEEECCCCCCchhhhhcCchhhccCcHHH
Confidence 67899999999999999999999888743 788899865432 3589999999999986653 4456788999
Q ss_pred hcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025207 142 WAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
+.++.+|+..+..++..+.++|+|||.+++ ..+..+...+.+.+.+.||....+.....+.++++++...
T Consensus 238 L~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~ 307 (506)
T PRK01544 238 LFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGFKQEEAVTQIFLDHGYNIESVYKDLQGHSRVILISPI 307 (506)
T ss_pred hcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECCchHHHHHHHHHhcCCCceEEEecCCCCceEEEeccc
Confidence 999999999999999999999999999988 4667788899999999999888888888888887766544
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-26 Score=183.81 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=156.7
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+-=.+++|.++.|+.+|+.++... ..++|||+|||+|.+++.+++. .++++|+|+|+++++++.|++|+
T Consensus 20 I~q~~~~~~~~~DaiLL~~~~~~~-------~~~~IlDlGaG~G~l~L~la~r----~~~a~I~~VEiq~~~a~~A~~nv 88 (248)
T COG4123 20 IIQDRCGFRYGTDAILLAAFAPVP-------KKGRILDLGAGNGALGLLLAQR----TEKAKIVGVEIQEEAAEMAQRNV 88 (248)
T ss_pred EEeCCCccccccHHHHHHhhcccc-------cCCeEEEecCCcCHHHHHHhcc----CCCCcEEEEEeCHHHHHHHHHHH
Confidence 556788999999999988876554 3799999999999988777665 56789999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
+.|++.. ++++.|+.+........+||+|+|||||+.........+....+.+.... .++.+++.+..+|||||.
T Consensus 89 ~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~---~le~~i~~a~~~lk~~G~ 165 (248)
T COG4123 89 ALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITL---DLEDLIRAAAKLLKPGGR 165 (248)
T ss_pred HhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcC---CHHHHHHHHHHHccCCCE
Confidence 9998875 99999999987766556899999999999887762222222222222211 278999999999999999
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcE---EEEEecCCCCccEEEEEEEecCcccc
Q 025207 169 LYLVTLTANDPSQICLQMMEKGYAA---RIVVQRSTEEENLHIIKFWRDFDIQM 219 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (256)
++++.+..+ ..++...+.+++|.. ..++++..+..+.++++++++++.++
T Consensus 166 l~~V~r~er-l~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~~~l 218 (248)
T COG4123 166 LAFVHRPER-LAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGKSGL 218 (248)
T ss_pred EEEEecHHH-HHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCCCCCc
Confidence 999887554 678899999988875 45778889999999999999988544
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=184.74 Aligned_cols=190 Identities=22% Similarity=0.327 Sum_probs=156.4
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.|.+.++++.||++++.+++.+++.+.. ..+..+|||+|||+|.+++.++.. .++++++|+|+++++++.|++|
T Consensus 84 ~f~v~~~vliPr~ete~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~l~la~~----~~~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 84 EFFVNEHVLIPRPETEELVEKALASLIS--QNPILHILDLGTGSGCIALALAYE----FPNAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred EEEECCCCcCCCCccHHHHHHHHHHhhh--cCCCCEEEEEeccHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 4789999999999999999998876531 123379999999999999998887 5678999999999999999999
Q ss_pred HHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc----ccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 90 LEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED----EVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+..+++. ..++.+|+.+... ..+||+|++||||...... ++...++..++.+|.+|+..+..++..+.++|
T Consensus 158 ~~~~~~~~~v~~~~~d~~~~~~---~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L 234 (284)
T TIGR00536 158 AEKNQLEHRVEFIQSNLFEPLA---GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL 234 (284)
T ss_pred HHHcCCCCcEEEEECchhccCc---CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 9998875 4899999876532 2479999999999876542 34457888999999999999999999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHH-HcCCcEEEEEecCCCCccEEEE
Q 025207 164 SKRGWLYLVTLTANDPSQICLQMM-EKGYAARIVVQRSTEEENLHII 209 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~l~ 209 (256)
+|||++++. .+..+...+.+++. ..+|....+.....+.+++.+.
T Consensus 235 ~~gG~l~~e-~g~~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~ 280 (284)
T TIGR00536 235 KPNGFLVCE-IGNWQQKSLKELLRIKFTWYDVENGRDLNGKERVVLG 280 (284)
T ss_pred cCCCEEEEE-ECccHHHHHHHHHHhcCCCceeEEecCCCCCceEEEE
Confidence 999999884 45666778888887 4678777777777777776653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=180.77 Aligned_cols=179 Identities=27% Similarity=0.405 Sum_probs=147.5
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.|++|.|+.+++.+++.++..+... ..+.+|||+|||+|.+++.++.. .++.+++|+|+|+.+++.|++|
T Consensus 56 ~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~--~~~~~vLDlg~GsG~i~l~la~~----~~~~~v~~vDis~~al~~A~~N 129 (251)
T TIGR03704 56 RIAVDPGVFVPRRRTEFLVDEAAALARPR--SGTLVVVDLCCGSGAVGAALAAA----LDGIELHAADIDPAAVRCARRN 129 (251)
T ss_pred EEEECCCCcCCCccHHHHHHHHHHhhccc--CCCCEEEEecCchHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHH
Confidence 37789999999999999999988765321 23468999999999999988876 5667999999999999999999
Q ss_pred HHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 90 LEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..++. +++++|+.+.......++||+|++||||..... +++...++..++.+|.++.+.+..++..+.++|+
T Consensus 130 ~~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~ 207 (251)
T TIGR03704 130 LADAGG--TVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA 207 (251)
T ss_pred HHHcCC--EEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 988774 788899876543322467999999999986543 3445677788899999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|||++++... ..+..++...+.+.||......
T Consensus 208 ~gG~l~l~~~-~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 208 PGGHLLVETS-ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred CCCEEEEEEC-cchHHHHHHHHHHCCCCceeeE
Confidence 9999999765 4567889999999999876654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=167.74 Aligned_cols=178 Identities=34% Similarity=0.519 Sum_probs=146.3
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025207 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
+|.|+.++.++.+.+... ++.+|||+|||+|.+++.++.. .+ +++++|+++.+++.+++|+..++..
T Consensus 1 ~~~~~~d~~~l~~~l~~~-------~~~~vLdlG~G~G~~~~~l~~~----~~--~v~~vD~s~~~~~~a~~~~~~~~~~ 67 (179)
T TIGR00537 1 VYEPAEDSLLLEANLREL-------KPDDVLEIGAGTGLVAIRLKGK----GK--CILTTDINPFAVKELRENAKLNNVG 67 (179)
T ss_pred CCCCCccHHHHHHHHHhc-------CCCeEEEeCCChhHHHHHHHhc----CC--EEEEEECCHHHHHHHHHHHHHcCCc
Confidence 589999997777665332 5678999999999998887765 33 8999999999999999999988876
Q ss_pred ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 97 ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.+++.+|+.+.. .++||+|++||||++.+.......+...++.++..+...+..++.++.++|+|||+++++....
T Consensus 68 ~~~~~~d~~~~~----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 68 LDVVMTDLFKGV----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred eEEEEccccccc----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 688888976642 3589999999999887665433344455666677777778999999999999999999988877
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025207 177 NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 177 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
....++...+++.||..+.+.......+..+++++
T Consensus 144 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~ 178 (179)
T TIGR00537 144 NGEPDTFDKLDERGFRYEIVAERGLFFEELFAIKA 178 (179)
T ss_pred CChHHHHHHHHhCCCeEEEEEEeecCceEEEEEEe
Confidence 77889999999999999999888888888877765
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-24 Score=171.36 Aligned_cols=195 Identities=22% Similarity=0.292 Sum_probs=153.1
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+...|+|++||++|+.+++++.+.+....--++..|||+|||+|++++.++..+ |+++++|+|.|+.++..|.+|+
T Consensus 117 l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L----~~~~v~AiD~S~~Ai~La~eN~ 192 (328)
T KOG2904|consen 117 LVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL----PQCTVTAIDVSKAAIKLAKENA 192 (328)
T ss_pred EEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC----CCceEEEEeccHHHHHHHHHHH
Confidence 567899999999999999999998864322356689999999999998888774 5789999999999999999999
Q ss_pred HHcCCcc--eEE----EcchhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHH
Q 025207 91 EAHNVHA--DLI----NTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSA 159 (256)
Q Consensus 91 ~~~~~~~--~~~----~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (256)
+++++.. .++ ..|..... +...+++|++++||||....+ .++...++..++.||..|.+++..+..-+
T Consensus 193 qr~~l~g~i~v~~~~me~d~~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a 271 (328)
T KOG2904|consen 193 QRLKLSGRIEVIHNIMESDASDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLA 271 (328)
T ss_pred HHHhhcCceEEEeccccccccccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhh
Confidence 9998866 444 33433332 134689999999999998776 56788999999999999999999999999
Q ss_pred hhccccCeEEEEEEeCCCCHHHHHHHHHHcC----CcEEEEEecCCCCccEEEEE
Q 025207 160 DKLLSKRGWLYLVTLTANDPSQICLQMMEKG----YAARIVVQRSTEEENLHIIK 210 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~l~~ 210 (256)
.++|+|||.+.+..........+.+.+.... +....++....+.++++.+.
T Consensus 272 ~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~ 326 (328)
T KOG2904|consen 272 TRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIH 326 (328)
T ss_pred HhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEEE
Confidence 9999999999997765555555555544432 23344566666666765543
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=175.14 Aligned_cols=172 Identities=23% Similarity=0.301 Sum_probs=140.9
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.+++|.|+++++.+++..+..+.. ..++.+|||+|||+|.+++.++.. .++++++|+|+|+.+++.|++|+
T Consensus 92 f~v~~~vlipr~~te~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~~~la~~----~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 92 FYVDERVLIPRSPIAELIEDGFAPWLE--PEPVKRILDLCTGSGCIAIACAYA----FPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred EEECCCCccCCCchHHHHHHHHHHHhc--cCCCCEEEEEeCchhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHH
Confidence 779999999999998888877653211 134679999999999999998887 67789999999999999999999
Q ss_pred HHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc----cccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 91 EAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE----VGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 91 ~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
..+++. ..++++|+.+..+ +++||+|++||||....... ....++..++.++..|...+..++..+.++|+
T Consensus 166 ~~~~~~~~i~~~~~D~~~~~~---~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~ 242 (284)
T TIGR03533 166 ERHGLEDRVTLIQSDLFAALP---GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN 242 (284)
T ss_pred HHcCCCCcEEEEECchhhccC---CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 999875 3889999876532 35799999999998765421 12467888899999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 165 KRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
|||++++... .. ...+.+.+.+.+|.+
T Consensus 243 ~gG~l~~e~g-~~-~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 243 ENGVLVVEVG-NS-MEALEEAYPDVPFTW 269 (284)
T ss_pred CCCEEEEEEC-cC-HHHHHHHHHhCCCce
Confidence 9999998543 43 368888898888765
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=172.26 Aligned_cols=188 Identities=25% Similarity=0.411 Sum_probs=152.3
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.+++++|+++++.++++++.... ..++.+|||+|||+|.+++.++.. .+.+.++|+|+++.+++.|++|
T Consensus 79 ~~~~~~~~lipr~~te~l~~~~~~~~~---~~~~~~vLDiG~GsG~~~~~la~~----~~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 79 DFKVSPGVLIPRPETEELVEWALEALL---LKEPLRVLDLGTGSGAIALALAKE----RPDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred EEEECCCceeCCCCcHHHHHHHHHhcc---ccCCCEEEEEcCcHHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 467889999999999999999885542 246789999999999999988887 5677999999999999999999
Q ss_pred HHHcC-CcceEEEcchhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 90 LEAHN-VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~-~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+.... ....++.+|+.+... +++||+|++||||..... .++...++..++.++..+...+..+++.+.++|
T Consensus 152 ~~~~~~~~i~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L 228 (275)
T PRK09328 152 AKHGLGARVEFLQGDWFEPLP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL 228 (275)
T ss_pred HHhCCCCcEEEEEccccCcCC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc
Confidence 87222 234888898865432 468999999999987543 334457888889999999999999999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEE
Q 025207 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 208 (256)
+|||++++. .+......+...+.+.||....+.....+..++.+
T Consensus 229 k~gG~l~~e-~g~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~ 272 (275)
T PRK09328 229 KPGGWLLLE-IGYDQGEAVRALLAAAGFADVETRKDLAGRDRVVL 272 (275)
T ss_pred ccCCEEEEE-ECchHHHHHHHHHHhCCCceeEEecCCCCCceEEE
Confidence 999999984 45566778899999999986666666666666554
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=168.54 Aligned_cols=186 Identities=27% Similarity=0.409 Sum_probs=151.8
Q ss_pred eeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 9 RLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 9 ~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
..+.+.+.++.|++++..+++.+++.+. ..+.+|||+|||+|.+++.++.. .++++++|+|+++.+++.+++
T Consensus 58 ~~~~~~~~~~~p~~~~~~l~~~~l~~~~----~~~~~ilDig~G~G~~~~~l~~~----~~~~~v~~iD~~~~~~~~a~~ 129 (251)
T TIGR03534 58 LDFKVSPGVLIPRPDTEELVEAALERLK----KGPLRVLDLGTGSGAIALALAKE----RPDARVTAVDISPEALAVARK 129 (251)
T ss_pred eEEEECCCcccCCCChHHHHHHHHHhcc----cCCCeEEEEeCcHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH
Confidence 3466789999999999999999888764 35579999999999999888876 567899999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCc-----ccccccchhhhcCCCCcHHHHHHHHHHHhhc
Q 025207 89 TLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-----EVGREGIASAWAGGENGRAVIDKILPSADKL 162 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (256)
++..+++.. .++++|+.+.. ..++||+|++||||...... +....++..++.++..+...+..+++.+.++
T Consensus 130 ~~~~~~~~~~~~~~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~ 206 (251)
T TIGR03534 130 NAARLGLDNVTFLQSDWFEPL---PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRL 206 (251)
T ss_pred HHHHcCCCeEEEEECchhccC---cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 999888764 89999987643 24789999999999875542 2233466777778888888889999999999
Q ss_pred cccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccE
Q 025207 163 LSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENL 206 (256)
Q Consensus 163 LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 206 (256)
|+|||++++.. +.....++.+.+.+.||....+.....+..++
T Consensus 207 L~~gG~~~~~~-~~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~ 249 (251)
T TIGR03534 207 LKPGGWLLLEI-GYDQGEAVRALFEAAGFADVETRKDLAGKDRV 249 (251)
T ss_pred cccCCEEEEEE-CccHHHHHHHHHHhCCCCceEEEeCCCCCcCe
Confidence 99999999854 45667789999999999877776666655554
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=172.43 Aligned_cols=173 Identities=23% Similarity=0.322 Sum_probs=138.7
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.+++|.|+++++.+++..+..+.. ..++.+|||+|||+|.+++.++.. .|+++|+|+|+|+.+++.|++|
T Consensus 103 ~f~v~~~vlipr~~te~lv~~~l~~~~~--~~~~~~VLDlG~GsG~iai~la~~----~p~~~V~avDis~~al~~A~~n 176 (307)
T PRK11805 103 EFYVDERVLVPRSPIAELIEDGFAPWLE--DPPVTRILDLCTGSGCIAIACAYA----FPDAEVDAVDISPDALAVAEIN 176 (307)
T ss_pred EEEECCCCcCCCCchHHHHHHHHHHHhc--cCCCCEEEEEechhhHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHH
Confidence 3778999999999998888877653211 122379999999999999888876 6788999999999999999999
Q ss_pred HHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc----cccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 90 LEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE----VGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+..+++. .+++++|+.+..+ +++||+|++||||....... ....++..++.++.+|...+..++..+.++|
T Consensus 177 ~~~~~l~~~i~~~~~D~~~~l~---~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L 253 (307)
T PRK11805 177 IERHGLEDRVTLIESDLFAALP---GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYL 253 (307)
T ss_pred HHHhCCCCcEEEEECchhhhCC---CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhc
Confidence 9998874 4899999876542 35899999999998754421 1246788888899999999999999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
+|||++++.. ... ...+.+.+.+.++.+
T Consensus 254 ~pgG~l~~E~-g~~-~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 254 TEDGVLVVEV-GNS-RVHLEEAYPDVPFTW 281 (307)
T ss_pred CCCCEEEEEE-CcC-HHHHHHHHhhCCCEE
Confidence 9999999854 333 456778887777654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=162.99 Aligned_cols=178 Identities=31% Similarity=0.418 Sum_probs=143.1
Q ss_pred eeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 9 RLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 9 ~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
..+...+++|.|..++..+++.+...- ..++.+|||+|||+|.+++.+++. . ..+++++|+++.+++.+++
T Consensus 7 ~~~~~~~g~~~p~~ds~~l~~~l~~~~----~~~~~~vLDlGcG~G~~~~~la~~----~-~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 7 DALLRAPGVYRPQEDTQLLADALAAEG----LGPGRRVLDLCTGSGALAVAAAAA----G-AGSVTAVDISRRAVRSARL 77 (223)
T ss_pred ceeecCCCCcCCCCcHHHHHHHHHhcc----cCCCCeEEEecCCHHHHHHHHHHc----C-CCeEEEEECCHHHHHHHHH
Confidence 347899999999999999888776532 146789999999999998887764 2 2489999999999999999
Q ss_pred HHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 89 TLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 89 ~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
|+..++.+..++.+|+.+.. .+++||+|++||||............+...|..+..+...+..++..+.++||+||+
T Consensus 78 n~~~~~~~~~~~~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 78 NALLAGVDVDVRRGDWARAV---EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred HHHHhCCeeEEEECchhhhc---cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence 99988876688889987643 246899999999998776654444556666777777777888999999999999999
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 169 LYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++........+....+++.++.......
T Consensus 155 l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 155 LLLVQSELSGVERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred EEEEEecccCHHHHHHHHHHCCCCeEEEEe
Confidence 999777666677888888888887655443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=191.43 Aligned_cols=182 Identities=19% Similarity=0.282 Sum_probs=144.2
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.|++|+||++|+.+++. +...... ..++.+|||+|||+|++++.+++. ++.++++|+|+|+.+++.|++|
T Consensus 88 ~~~V~p~VLIPRpeTE~lve~-L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~----~~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 88 TMMEIPSIFIPEDWSFTFYEG-LNRHPDS-IFRDKTVAELGCGNGWISIAIAEK----WLPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred ceeeCCCcccCchhHHHHHHH-HHhcccc-cCCCCEEEEEecchHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 488999999999999999999 4432110 013579999999999999998887 6667999999999999999999
Q ss_pred HHHcCC-----------------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc-----cccccc---------c
Q 025207 90 LEAHNV-----------------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-----EVGREG---------I 138 (256)
Q Consensus 90 ~~~~~~-----------------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-----~~~~~~---------~ 138 (256)
+..|++ ..+++++|+.+.... ...+||+||+||||...++. ++...+ +
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhccc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 998753 138899998876532 12369999999999987753 223222 3
Q ss_pred hhhhcC---CCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH-HHHHHcCCcEEEEEec
Q 025207 139 ASAWAG---GENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC-LQMMEKGYAARIVVQR 199 (256)
Q Consensus 139 ~~~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~ 199 (256)
..++.+ +.+|+..+..++..+.++|+|||++++ ..+.++...+. +++++.||....++.+
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-EiG~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-NMGGRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECccHHHHHHHHHHHHCCCCeeEEeee
Confidence 456655 589999999999999999999999998 56677778888 6999999988777654
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-21 Score=152.63 Aligned_cols=182 Identities=31% Similarity=0.540 Sum_probs=141.2
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
-++.|+|+.++..+++.+.. .++++|||+|||+|.++..++.. +.+++|+|+++++++.+++++..+
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~-------~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~ 68 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD-------KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLN 68 (188)
T ss_pred CCcccCcchhHHHHHHhhhc-------cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHc
Confidence 46889999998888887654 26789999999999998777764 468999999999999999999888
Q ss_pred CCc---ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 94 NVH---ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 94 ~~~---~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++. ..++.+|+.+... +.+||+|++||||...........+....+..+..+...+..+++++.++|+|||.++
T Consensus 69 ~~~~~~~~~~~~d~~~~~~---~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~ 145 (188)
T PRK14968 69 NIRNNGVEVIRSDLFEPFR---GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL 145 (188)
T ss_pred CCCCcceEEEecccccccc---ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence 765 4678888766432 3589999999999875543322233344555566666778899999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025207 171 LVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
++.+.......+..++.+.||+...+.......+.+.++..
T Consensus 146 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T PRK14968 146 LLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLEL 186 (188)
T ss_pred EEEcccCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEE
Confidence 88777666788999999999987776666555555555544
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=152.96 Aligned_cols=140 Identities=28% Similarity=0.519 Sum_probs=110.6
Q ss_pred eeccCCccccCC---chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 11 VSSHPEVYEPCD---DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~---~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+-.+|++|.|.. .+.+|++.+... +..+|||+|||+|.+++.+++. .+..+|+++|+++.+++.++
T Consensus 4 ~~~~~gvFs~~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~----~~~~~v~~vDi~~~a~~~a~ 72 (170)
T PF05175_consen 4 FITHPGVFSPPRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKR----GPDAKVTAVDINPDALELAK 72 (170)
T ss_dssp EEEETTSTTTTSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHT----STCEEEEEEESBHHHHHHHH
T ss_pred EEECCCeeCCCCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHh----CCCCEEEEEcCCHHHHHHHH
Confidence 568899998553 266777766664 5789999999999999888887 77778999999999999999
Q ss_pred HHHHHcCCc-ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 88 KTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 88 ~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
+|+..+++. .+++..|+.+... +++||+|++|||+..- ...+......++..+.++|+||
T Consensus 73 ~n~~~n~~~~v~~~~~d~~~~~~---~~~fD~Iv~NPP~~~~----------------~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 73 RNAERNGLENVEVVQSDLFEALP---DGKFDLIVSNPPFHAG----------------GDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp HHHHHTTCTTEEEEESSTTTTCC---TTCEEEEEE---SBTT----------------SHCHHHHHHHHHHHHHHHEEEE
T ss_pred HHHHhcCcccccccccccccccc---ccceeEEEEccchhcc----------------cccchhhHHHHHHHHHHhccCC
Confidence 999999988 5899999877644 4799999999996422 2234567899999999999999
Q ss_pred eEEEEEEeCCCCHH
Q 025207 167 GWLYLVTLTANDPS 180 (256)
Q Consensus 167 G~l~~~~~~~~~~~ 180 (256)
|.++++........
T Consensus 134 G~l~lv~~~~~~~~ 147 (170)
T PF05175_consen 134 GRLFLVINSHLGYE 147 (170)
T ss_dssp EEEEEEEETTSCHH
T ss_pred CEEEEEeecCCChH
Confidence 99988776544333
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-19 Score=153.06 Aligned_cols=168 Identities=17% Similarity=0.237 Sum_probs=119.8
Q ss_pred eeccCCccccCCc---hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 11 VSSHPEVYEPCDD---SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~~---~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+..+|++|..... ++++.+ .++ ...+.+|||+|||+|.+++.+++. +|+++|+++|+|+.+++.|+
T Consensus 201 ~~~~~gVFs~~~LD~GtrllL~----~lp---~~~~~~VLDLGCGtGvi~i~la~~----~P~~~V~~vD~S~~Av~~A~ 269 (378)
T PRK15001 201 IHNHANVFSRTGLDIGARFFMQ----HLP---ENLEGEIVDLGCGNGVIGLTLLDK----NPQAKVVFVDESPMAVASSR 269 (378)
T ss_pred EEecCCccCCCCcChHHHHHHH----hCC---cccCCeEEEEeccccHHHHHHHHh----CCCCEEEEEECCHHHHHHHH
Confidence 6678999988632 555444 332 123579999999999999888887 78899999999999999999
Q ss_pred HHHHHcCCc----ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 88 KTLEAHNVH----ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 88 ~~~~~~~~~----~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+|++.|+.. .+++..|+.+.. .+++||+|+|||||+..... .......++..+.++|
T Consensus 270 ~N~~~n~~~~~~~v~~~~~D~l~~~---~~~~fDlIlsNPPfh~~~~~----------------~~~ia~~l~~~a~~~L 330 (378)
T PRK15001 270 LNVETNMPEALDRCEFMINNALSGV---EPFRFNAVLCNPPFHQQHAL----------------TDNVAWEMFHHARRCL 330 (378)
T ss_pred HHHHHcCcccCceEEEEEccccccC---CCCCEEEEEECcCcccCccC----------------CHHHHHHHHHHHHHhc
Confidence 999988743 277788876543 23589999999999743211 1123567899999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025207 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
+|||.++++.... ......+++. |... .......++.++++.|.+
T Consensus 331 kpGG~L~iV~nr~---l~y~~~L~~~-fg~~---~~va~~~kf~vl~a~k~~ 375 (378)
T PRK15001 331 KINGELYIVANRH---LDYFHKLKKI-FGNC---TTIATNNKFVVLKAVKLG 375 (378)
T ss_pred ccCCEEEEEEecC---cCHHHHHHHH-cCCc---eEEccCCCEEEEEEEeCC
Confidence 9999999986322 2233445443 2221 223556677888888743
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-19 Score=145.83 Aligned_cols=165 Identities=21% Similarity=0.330 Sum_probs=119.7
Q ss_pred eeccCCccccCCc---hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 11 VSSHPEVYEPCDD---SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~~---~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
|..+|++|.-... |++|++.+.. ..+.+|||+|||.|.+++.+++. +|+..++.+|+|..+++.++
T Consensus 131 ~~t~pGVFS~~~lD~GS~lLl~~l~~-------~~~~~vlDlGCG~Gvlg~~la~~----~p~~~vtmvDvn~~Av~~ar 199 (300)
T COG2813 131 FKTLPGVFSRDKLDKGSRLLLETLPP-------DLGGKVLDLGCGYGVLGLVLAKK----SPQAKLTLVDVNARAVESAR 199 (300)
T ss_pred EEeCCCCCcCCCcChHHHHHHHhCCc-------cCCCcEEEeCCCccHHHHHHHHh----CCCCeEEEEecCHHHHHHHH
Confidence 6678888876543 5555554333 34559999999999999999888 88999999999999999999
Q ss_pred HHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 88 KTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 88 ~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
+|+..|+.+. .+...|..+... ++||+|||||||+.--. ........++....+.|++|
T Consensus 200 ~Nl~~N~~~~~~v~~s~~~~~v~----~kfd~IisNPPfh~G~~----------------v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 200 KNLAANGVENTEVWASNLYEPVE----GKFDLIISNPPFHAGKA----------------VVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred HhHHHcCCCccEEEEeccccccc----ccccEEEeCCCccCCcc----------------hhHHHHHHHHHHHHHhhccC
Confidence 9999999988 688888776543 49999999999973211 11223458999999999999
Q ss_pred eEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 167 GWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 167 G~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
|.+.++.... ......|.+..-.+..+. + ...+.++++.|
T Consensus 260 GeL~iVan~~---l~y~~~L~~~Fg~v~~la-~---~~gf~Vl~a~k 299 (300)
T COG2813 260 GELWIVANRH---LPYEKKLKELFGNVEVLA-K---NGGFKVLRAKK 299 (300)
T ss_pred CEEEEEEcCC---CChHHHHHHhcCCEEEEE-e---CCCEEEEEEec
Confidence 9999987632 334555555422333332 2 23446666554
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=130.13 Aligned_cols=114 Identities=29% Similarity=0.453 Sum_probs=90.5
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
|.+|||+|||+|.+++.+++. + ..+++|+|+++.+++.++.++..+++. .+++++|+.+......+++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~----~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRR----G-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHH----C-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHH----C-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEE
Confidence 468999999999999988887 4 469999999999999999999998874 399999998886555678999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+||||.......... ......+++.+.++|+|||+++++.+
T Consensus 76 ~npP~~~~~~~~~~~-------------~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAAL-------------RRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----G-------------GCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhh-------------HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999998653322110 11367889999999999999999875
|
... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=145.12 Aligned_cols=167 Identities=22% Similarity=0.355 Sum_probs=117.6
Q ss_pred eeccCCccccCC-c--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 11 VSSHPEVYEPCD-D--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~-~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+...|++|.... + +..+.+.+.. ....+|||+|||+|.+++.+++. +|+.+++++|+++.+++.++
T Consensus 169 i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~----~p~~~v~~vDis~~Al~~A~ 237 (342)
T PRK09489 169 VKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARH----SPKIRLTLSDVSAAALESSR 237 (342)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHh----CCCCEEEEEECCHHHHHHHH
Confidence 567788887743 2 4555554332 23468999999999998888776 67789999999999999999
Q ss_pred HHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025207 88 KTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 88 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
+++..+++..+++..|+.+.. +++||+|++||||+.... ........++..+.++|||||
T Consensus 238 ~nl~~n~l~~~~~~~D~~~~~----~~~fDlIvsNPPFH~g~~----------------~~~~~~~~~i~~a~~~LkpgG 297 (342)
T PRK09489 238 ATLAANGLEGEVFASNVFSDI----KGRFDMIISNPPFHDGIQ----------------TSLDAAQTLIRGAVRHLNSGG 297 (342)
T ss_pred HHHHHcCCCCEEEEccccccc----CCCccEEEECCCccCCcc----------------ccHHHHHHHHHHHHHhcCcCC
Confidence 999999887788888876532 468999999999964221 113346889999999999999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025207 168 WLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
.++++....-... ..+.+. |....+.. ....+.++.+.++.
T Consensus 298 ~L~iVan~~l~y~---~~l~~~-Fg~~~~la---~~~~f~v~~a~~~~ 338 (342)
T PRK09489 298 ELRIVANAFLPYP---DLLDET-FGSHEVLA---QTGRFKVYRAIMTR 338 (342)
T ss_pred EEEEEEeCCCChH---HHHHHH-cCCeEEEE---eCCCEEEEEEEccC
Confidence 9999876543222 233322 22222222 33445666666543
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=140.66 Aligned_cols=187 Identities=13% Similarity=0.235 Sum_probs=128.6
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcc-----cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC
Q 025207 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRIN-----LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI 78 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~-----~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~ 78 (256)
.|++...++.++.++|.-. ..-++.++.+.+.. ++.+++.+|||||||+|++...++.. .++++++|+|+
T Consensus 71 ~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~----~~~~~~~atDI 146 (321)
T PRK11727 71 FYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVH----EYGWRFVGSDI 146 (321)
T ss_pred hcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhh----CCCCEEEEEeC
Confidence 4566645788899998876 66666676666532 33456799999999999875554443 56889999999
Q ss_pred CHHHHHHHHHHHHHc-CCcc--eEEE-cchhhchhhh--cCCCccEEEECCCCCCCCCccccc---c--------c----
Q 025207 79 NPYAVEVTRKTLEAH-NVHA--DLIN-TDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGR---E--------G---- 137 (256)
Q Consensus 79 ~~~~i~~a~~~~~~~-~~~~--~~~~-~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~---~--------~---- 137 (256)
++.+++.|++|+..| ++.. .+.. .|..+..... ..+.||+|+|||||+......... + .
T Consensus 147 d~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~ 226 (321)
T PRK11727 147 DPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKV 226 (321)
T ss_pred CHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccc
Confidence 999999999999999 6765 4432 3333322211 246899999999999876642110 0 0
Q ss_pred -----chhh-h-cCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 138 -----IASA-W-AGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 138 -----~~~~-~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.... | .||+ ..+...++++...+++..|++..+.........+.+.+++.|.....+.
T Consensus 227 l~f~g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~ 291 (321)
T PRK11727 227 LNFGGQQAELWCEGGE--VAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTI 291 (321)
T ss_pred cCCcchhhheeeCCcE--eeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEE
Confidence 0011 1 2333 3356677888888888888877766767778889999999888544433
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=130.55 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=101.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.++++++.++++. +++++|+.+.. ..++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~----~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA----RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---HEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH----CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---ccCCccEEE
Confidence 5789999999999999888765 567799999999999999999999888754 89999988752 247899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH---cCCcEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME---KGYAARIVV 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~---~g~~~~~~~ 197 (256)
++. +. .+..+++.+.++|+|||++++... .....++....+. .|++.....
T Consensus 115 s~~-~~------------------------~~~~~~~~~~~~LkpgG~lvi~~~-~~~~~~~~~~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 115 SRA-LA------------------------SLNVLLELTLNLLKVGGYFLAYKG-KKYLDEIEEAKRKCQVLGVEPLEVP 168 (181)
T ss_pred ehh-hh------------------------CHHHHHHHHHHhcCCCCEEEEEcC-CCcHHHHHHHHHhhhhcCceEeecc
Confidence 974 11 146778888999999999998653 3445555555444 577766665
Q ss_pred ecCCCCccEEE
Q 025207 198 QRSTEEENLHI 208 (256)
Q Consensus 198 ~~~~~~~~~~l 208 (256)
+...+..++++
T Consensus 169 ~~~~~~~~~~~ 179 (181)
T TIGR00138 169 PLTGPDRHLVI 179 (181)
T ss_pred ccCCCceEEEE
Confidence 55555444443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=137.68 Aligned_cols=139 Identities=23% Similarity=0.320 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
|.+.++++-.+. +++.+|||+|||||.++++++++ +. ..++|+|++|.+++.|++|+.+|++.. ....
T Consensus 149 T~lcL~~Le~~~-----~~g~~vlDvGcGSGILaIAa~kL----GA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~ 218 (300)
T COG2264 149 TSLCLEALEKLL-----KKGKTVLDVGCGSGILAIAAAKL----GA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKG 218 (300)
T ss_pred HHHHHHHHHHhh-----cCCCEEEEecCChhHHHHHHHHc----CC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhccc
Confidence 678888877775 48999999999999999999887 22 369999999999999999999999874 2222
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.+..... ..++||+|++|-- ...+..+...+.++|||||+++++..-.+..+.
T Consensus 219 ~~~~~~~---~~~~~DvIVANIL------------------------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~ 271 (300)
T COG2264 219 FLLLEVP---ENGPFDVIVANIL------------------------AEVLVELAPDIKRLLKPGGRLILSGILEDQAES 271 (300)
T ss_pred ccchhhc---ccCcccEEEehhh------------------------HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHH
Confidence 2322221 2368999999841 234678888999999999999998877777788
Q ss_pred HHHHHHHcCCcEEEEEec
Q 025207 182 ICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~ 199 (256)
+...+.+.||.+..+..+
T Consensus 272 V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 272 VAEAYEQAGFEVVEVLER 289 (300)
T ss_pred HHHHHHhCCCeEeEEEec
Confidence 899998999987666554
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=127.02 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=105.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.|++++..++++. +++.+|+.+... .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~----~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIA----RPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHH----CCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---CCCccEEE
Confidence 4799999999999999888876 577899999999999999999999998864 899999887532 57899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE---
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV--- 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 197 (256)
++. + ..+..+++.+.++|+|||+++++.. .....++....+..|+....++
T Consensus 118 ~~~-~------------------------~~~~~~l~~~~~~LkpGG~lv~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 118 SRA-V------------------------ASLSDLVELCLPLLKPGGRFLALKG-RDPEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred Ecc-c------------------------cCHHHHHHHHHHhcCCCeEEEEEeC-CChHHHHHHHHHhcCceEeeeEEEe
Confidence 962 0 1157889999999999999999764 4456677788888898764433
Q ss_pred -ecCCCCccEEEE
Q 025207 198 -QRSTEEENLHII 209 (256)
Q Consensus 198 -~~~~~~~~~~l~ 209 (256)
+...++.++.++
T Consensus 172 ~~~~~~~~~~~~~ 184 (187)
T PRK00107 172 LPGLDGERHLVII 184 (187)
T ss_pred cCCCCCcEEEEEE
Confidence 333444454443
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-17 Score=139.10 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=114.0
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025207 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
.+.|.+-...++..+++... .+++.+|||+|||+|.++++++.. +..++|+|+++.|++.++.|+...++.
T Consensus 160 ~~~~~~l~~~la~~~~~l~~---~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLAR---VTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhC---CCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 34454444556666655432 257889999999999998887664 468999999999999999999988877
Q ss_pred c-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 97 A-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 97 ~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
. .+..+|+.+.. ..+++||+|++||||....... +......+..++..+.+.|+|||+++++.+.
T Consensus 231 ~i~~~~~D~~~l~--~~~~~~D~Iv~dPPyg~~~~~~------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 231 DFFVKRGDATKLP--LSSESVDAIATDPPYGRSTTAA------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CCeEEecchhcCC--cccCCCCEEEECCCCcCccccc------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 5 88899988753 2357899999999997543211 0111234688999999999999999998775
Q ss_pred CCCHHHHHHHHHHcCCcEEEEE
Q 025207 176 ANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 176 ~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.. ++...++..|| +...+
T Consensus 297 ~~---~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 297 RI---DLESLAEDAFR-VVKRF 314 (329)
T ss_pred CC---CHHHHHhhcCc-chhee
Confidence 43 45567888898 54433
|
This family is found exclusively in the Archaea. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-17 Score=134.26 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=105.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
....+|||+|||+|.+++.++.. .++.+|+|+|+++.+++.++++.. ...++++|+.+... +.+||+|+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r----~~~~~V~gVDisp~al~~Ar~n~~----~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHR----CKPEKIVCVELNPEFARIGKRLLP----EAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhCc----CCEEEECchhhhcc---cCCCcEEE
Confidence 35679999999999998777665 345689999999999999988742 34789999887642 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHH--HHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAV--IDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~ 192 (256)
+||||++.+..+. ....++.+|..+.+. +..++.....+|+|+|.++++..+.. ...+..+++++.||.
T Consensus 132 sNPPF~~l~~~d~---~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 132 SNPPFGKINTTDT---KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred EcCCccccCchhh---hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 9999998654332 122455566666665 47889999999999999888654322 356889999999876
Q ss_pred E
Q 025207 193 A 193 (256)
Q Consensus 193 ~ 193 (256)
.
T Consensus 209 ~ 209 (279)
T PHA03411 209 T 209 (279)
T ss_pred e
Confidence 4
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-17 Score=119.15 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=83.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
|+.+|||+|||+|.+++.+++. .++++++|+|+++++++.|++++...+.. .+++++|+ ..... ..+.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARL----FPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-FLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHH----HTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-TSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-cCCCCCEE
Confidence 5789999999999999999885 57889999999999999999999665543 38999999 32222 24679999
Q ss_pred EECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 120 VVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++. ...... .......+++.+.+.|+|||++++.+
T Consensus 75 ~~~~~~~~~~~------------------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLL------------------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCC------------------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCcccccc------------------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9975 111010 11236788999999999999999865
|
... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=133.54 Aligned_cols=120 Identities=19% Similarity=0.266 Sum_probs=97.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++|.+|||+|||||.+++.+++.. +.++|+|+|+|+.|++.+++.....+.. .+++.+|+.+. ++.+.+||+|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~----g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L--Pf~D~sFD~v 123 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSV----GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL--PFPDNSFDAV 123 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhc----CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC--CCCCCccCEE
Confidence 378999999999999999888884 3679999999999999999998876655 48999999887 5778999999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHH
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMM 187 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 187 (256)
.+..-+.+.++ .+.+|+++.|+|||||++++..........+...+.
T Consensus 124 t~~fglrnv~d---------------------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~ 170 (238)
T COG2226 124 TISFGLRNVTD---------------------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYI 170 (238)
T ss_pred EeeehhhcCCC---------------------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHH
Confidence 99655544433 679999999999999999987755543333333333
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-17 Score=125.23 Aligned_cols=110 Identities=25% Similarity=0.395 Sum_probs=90.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++.+|||+|||+|.++..++..+ +++.+++|+|+++++++.|+++++..+.+. +++++|+.+. +....+.||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~---~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-~~~~~~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL---NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-PQELEEKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS---TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-CGCSSTTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc---CCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-ccccCCCeeEE
Confidence 467999999999999998888532 567899999999999999999999988875 9999999994 32122789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+++.++++.. ....+++.+.++|+++|++++....
T Consensus 78 ~~~~~l~~~~---------------------~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFP---------------------DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTS---------------------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhcc---------------------CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9988764332 2568899999999999999997765
|
... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=129.45 Aligned_cols=135 Identities=18% Similarity=0.211 Sum_probs=104.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch-hhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI-ASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~-~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..+++. .|+.+++|+|+++++++.|++++..+++.. .++++|+ ......+.+++||+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~----~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKA----NPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHH----CCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccce
Confidence 46789999999999999888876 567799999999999999999998887654 8999998 44322234678999
Q ss_pred EEECCCC--CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025207 119 MVVNPPY--VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 119 Ii~npP~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
|+++.|. ....... .......+++.+.++|||||+++++++......++.+.+++.|+...
T Consensus 115 V~~~~~~p~~~~~~~~---------------~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 115 IYLNFPDPWPKKRHHK---------------RRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEEECCCCCCCccccc---------------cccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 9997643 2111100 00114678999999999999999988777777788999999887544
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-16 Score=127.16 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=87.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..+++.. .++++++|+|+++.+++.+++++...+.+. +++.+|+.+.. +.+++||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V 118 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAV---GPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--FDDNSFDYV 118 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--CCCCCccEE
Confidence 567899999999999988887763 256799999999999999999988776644 88889987652 335789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++..+.+.++ ...+++++.++|+|||++++...
T Consensus 119 ~~~~~l~~~~~---------------------~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 119 TIGFGLRNVPD---------------------YMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EEecccccCCC---------------------HHHHHHHHHHHcCcCeEEEEEEC
Confidence 99766543332 46789999999999999998664
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=132.34 Aligned_cols=135 Identities=22% Similarity=0.308 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
|.+.++.+..+. .++++|||+|||||.+++.++++ +. .+|+|+|++|.+++.|++|+..|++..++....
T Consensus 148 T~lcl~~l~~~~-----~~g~~vLDvG~GSGILaiaA~kl----GA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~ 217 (295)
T PF06325_consen 148 TRLCLELLEKYV-----KPGKRVLDVGCGSGILAIAAAKL----GA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL 217 (295)
T ss_dssp HHHHHHHHHHHS-----STTSEEEEES-TTSHHHHHHHHT----TB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC
T ss_pred HHHHHHHHHHhc-----cCCCEEEEeCCcHHHHHHHHHHc----CC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 778888777764 57899999999999999998886 22 379999999999999999999999887554432
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
..+ ...++||+|++|-- ...+..++..+.++|+|||+++++..-.....++.
T Consensus 218 ~~~----~~~~~~dlvvANI~------------------------~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~ 269 (295)
T PF06325_consen 218 SED----LVEGKFDLVVANIL------------------------ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVI 269 (295)
T ss_dssp TSC----TCCS-EEEEEEES-------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHH
T ss_pred ecc----cccccCCEEEECCC------------------------HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHH
Confidence 222 22479999999843 34567788888999999999999887677778888
Q ss_pred HHHHHcCCcEEEEE
Q 025207 184 LQMMEKGYAARIVV 197 (256)
Q Consensus 184 ~~~~~~g~~~~~~~ 197 (256)
+.+.+ ||......
T Consensus 270 ~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 270 EAYKQ-GFELVEER 282 (295)
T ss_dssp HHHHT-TEEEEEEE
T ss_pred HHHHC-CCEEEEEE
Confidence 88866 88754433
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-17 Score=133.07 Aligned_cols=120 Identities=19% Similarity=0.283 Sum_probs=82.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||||.++..+++.+ .++++|+|+|+|+.|++.|++++...+... +++++|+.+. ++.+++||+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~---~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l--p~~d~sfD~v 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRV---GPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL--PFPDNSFDAV 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGS---S---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----S-TT-EEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHC---CCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh--cCCCCceeEE
Confidence 578999999999999887776653 356799999999999999999998876644 9999999886 4557999999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
++..-+.+.++ ....+++++++|||||+++++..+......+...+
T Consensus 121 ~~~fglrn~~d---------------------~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~ 166 (233)
T PF01209_consen 121 TCSFGLRNFPD---------------------RERALREMYRVLKPGGRLVILEFSKPRNPLLRALY 166 (233)
T ss_dssp EEES-GGG-SS---------------------HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHH
T ss_pred EHHhhHHhhCC---------------------HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhcee
Confidence 98654433322 56889999999999999998876555433333333
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-15 Score=120.76 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=98.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.+++.+++. +++++++++|+++.+++.+++|+..+++.. +++.+|.... ..++||+|
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~~~~~D~v 101 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQ----FPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----LPGKADAI 101 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----cCcCCCEE
Confidence 46789999999999999988876 677899999999999999999998887654 7888886432 23689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
+++.... .+..++..+.+.|+|||++++.........++.+.+++.||...
T Consensus 102 ~~~~~~~------------------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 102 FIGGSGG------------------------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL 152 (187)
T ss_pred EECCCcc------------------------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence 9863210 14677889999999999999876666667888999999998643
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=118.78 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=106.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
..++.+++|+|||||.++++++.. +|.++++++|-++++++..++|.+..+.++ .++.+++.+.+... .+||.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~----~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~--~~~da 105 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALA----GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL--PSPDA 105 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh----CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC--CCCCE
Confidence 468999999999999999999965 788999999999999999999999999877 99999999887653 27999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
|+.. |.. ..+.+++.+...|+|||++++............+++++.|+.
T Consensus 106 iFIG----------------------Gg~---~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 106 IFIG----------------------GGG---NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred EEEC----------------------CCC---CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 9773 222 278999999999999999999887777777889999999993
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=127.86 Aligned_cols=115 Identities=21% Similarity=0.323 Sum_probs=93.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||.|.++..+|++ |+.|+|+|+++++++.|+....+.++..++.+..+.+.... .++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~--~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASA--GGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhc--CCCccEEEE
Confidence 7899999999999999999987 57999999999999999999999998877777777766433 379999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHH
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQ 185 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 185 (256)
.=..-|.++ ...++..|.+++||||++++++...+....+..+
T Consensus 131 mEVlEHv~d---------------------p~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i 173 (243)
T COG2227 131 MEVLEHVPD---------------------PESFLRACAKLVKPGGILFLSTINRTLKAYLLAI 173 (243)
T ss_pred hhHHHccCC---------------------HHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHH
Confidence 644444433 4578999999999999999998876654444333
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-15 Score=125.28 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=84.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CC-cceEEEcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NV-HADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~-~~~~~~~d~~~~~~~~~~~~f 116 (256)
.++.+|||+|||+|.++..+++.. .++++|+|+|+|++|++.|+++.... .. +.+++++|+.+. ++.+++|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~---~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l--p~~~~sf 146 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKV---GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL--PFDDCYF 146 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC--CCCCCCE
Confidence 467899999999999887777653 24569999999999999998775421 12 337899998775 3446789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+++..+.+.++ ...+++++.++|||||+++++..
T Consensus 147 D~V~~~~~l~~~~d---------------------~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 147 DAITMGYGLRNVVD---------------------RLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred eEEEEecccccCCC---------------------HHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999766554432 56889999999999999988764
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-16 Score=135.30 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=105.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhh--cCCCc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKR--LAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~--~~~~f 116 (256)
++++|||+|||+|.+++.++.. ...+|+++|+++.+++.|++|+..|+++ .+++++|+.+.+... ..++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-----ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-----GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 6789999999999998765532 2348999999999999999999999974 389999999876543 24589
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHH----HHHHHHHcCC
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQ----ICLQMMEKGY 191 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~----~~~~~~~~g~ 191 (256)
|+|++||||+...... .. .....+..++..+.++|+|||+++..+++.. ..++ +.+...+.|-
T Consensus 295 DlVilDPP~f~~~k~~---------l~---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~ 362 (396)
T PRK15128 295 DVIVMDPPKFVENKSQ---------LM---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_pred CEEEECCCCCCCChHH---------HH---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 9999999997654311 00 1122367788889999999999998766433 2233 3334444566
Q ss_pred cEEEEEecCCCCcc
Q 025207 192 AARIVVQRSTEEEN 205 (256)
Q Consensus 192 ~~~~~~~~~~~~~~ 205 (256)
....+.....+.++
T Consensus 363 ~~~~l~~~~~~~Dh 376 (396)
T PRK15128 363 DVQFIEQFRQAADH 376 (396)
T ss_pred eEEEEEEcCCCCCC
Confidence 66666655444444
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-16 Score=123.42 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=100.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhc-CCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~I 119 (256)
...+|||+|||+|.++..+++. +|+..++|+|+++.+++.|++++...++.+ .++++|+.+...... ++++|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~----~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQ----NPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 5679999999999999888877 788899999999999999999998887765 899999987654332 4689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
++|+|-...... +... ......++..+.++|||||.+++.+.......++...+...+
T Consensus 92 ~~~~pdpw~k~~----h~~~---------r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 92 FLNFPDPWPKKR----HNKR---------RITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND 149 (194)
T ss_pred EEECCCcCCCCC----cccc---------ccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC
Confidence 998752111000 0000 111367899999999999999998766665666777777765
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-15 Score=133.76 Aligned_cols=142 Identities=19% Similarity=0.195 Sum_probs=102.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|..++.++.. .++..|+++|+++.+++.+++|+..+++...++++|+.+.......++||.|+
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~----~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILEL----APQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEE
Confidence 57899999999999999988887 34469999999999999999999999887788999987643212246899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
+|||+...... .+.+...|...... ......++..+.++|||||++++++++.. ....+...++++
T Consensus 319 ~D~Pcs~~G~~---~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~ 391 (427)
T PRK10901 319 LDAPCSATGVI---RRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH 391 (427)
T ss_pred ECCCCCccccc---ccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 99998743211 12222222211110 12356789999999999999999887544 233455566554
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=122.66 Aligned_cols=104 Identities=19% Similarity=0.272 Sum_probs=82.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|..++.+++. +++|+|+|+|+.+++.+++++...++.. ++...|+.+.. + +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~--~-~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT--F-DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC--c-CCCcCEEE
Confidence 5689999999999998887764 5699999999999999999998887764 77888876642 2 36799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++..+++.+. .....++..+.++|+|||.++++.
T Consensus 101 ~~~~~~~~~~-------------------~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 101 STVVLMFLEA-------------------KTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EecchhhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9876543322 126788999999999999966543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-15 Score=129.01 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=86.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. + +++|+|+|+++.+++.++++....++. .+++.+|+.+. ++.+++||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~----~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARK----Y-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ--PFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHh----c-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC--CCCCCCccE
Confidence 56789999999999998888775 3 569999999999999999998887764 38999998765 344689999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|++.-.+.+.++ ...+++++.++|||||++++++.
T Consensus 190 V~s~~~~~h~~d---------------------~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 190 VWSMESGEHMPD---------------------KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EEECCchhccCC---------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 999755444332 46789999999999999998653
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-15 Score=133.65 Aligned_cols=166 Identities=19% Similarity=0.139 Sum_probs=112.7
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.+.+...+..++..++.. .++.+|||+|||+|..++.++..+. +++.|+++|+++.+++.+++|+..++
T Consensus 229 ~G~~~~qd~~s~lv~~~l~~------~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~avDi~~~~l~~~~~n~~~~g 299 (444)
T PRK14902 229 DGLITIQDESSMLVAPALDP------KGGDTVLDACAAPGGKTTHIAELLK---NTGKVVALDIHEHKLKLIEENAKRLG 299 (444)
T ss_pred CceEEEEChHHHHHHHHhCC------CCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 44455554444444433322 4678999999999999999888742 45699999999999999999999998
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEE
Q 025207 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l 169 (256)
+.. .++++|+.+....+ .++||+|++|||+..... ..+.+...|....... .....++..+.++|||||++
T Consensus 300 ~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~---~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~l 375 (444)
T PRK14902 300 LTNIETKALDARKVHEKF-AEKFDKILVDAPCSGLGV---IRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGIL 375 (444)
T ss_pred CCeEEEEeCCcccccchh-cccCCEEEEcCCCCCCee---eccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 765 88999987754332 368999999999763221 1223333332221111 13457899999999999999
Q ss_pred EEEEeCCCC---HHHHHHHHHHc-CCcE
Q 025207 170 YLVTLTAND---PSQICLQMMEK-GYAA 193 (256)
Q Consensus 170 ~~~~~~~~~---~~~~~~~~~~~-g~~~ 193 (256)
++++++... ...+...++++ .|+.
T Consensus 376 vystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 376 VYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred EEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 998776532 23445555554 3543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=143.13 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=113.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhcCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++++|||+|||+|.+++.++.. + ...|+++|+|+.+++.|++|+..|++. .+++++|+.+.+... .++||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~----G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG----G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-REQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-CCCcCE
Confidence 5789999999999999988874 2 236999999999999999999999985 389999998876443 468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|++||||+....... ..+ .....+..++..+.++|+|||.+++.++... .....+.+.+.|+....+..
T Consensus 612 IilDPP~f~~~~~~~------~~~----~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 612 IFIDPPTFSNSKRME------DSF----DVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred EEECCCCCCCCCccc------hhh----hHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CChhHHHHHhCCCeEEEEec
Confidence 999999986432100 000 1123467888999999999999988665443 34457788888999888877
Q ss_pred cCCCCccE
Q 025207 199 RSTEEENL 206 (256)
Q Consensus 199 ~~~~~~~~ 206 (256)
...+.++-
T Consensus 681 ~~~~~Dhp 688 (702)
T PRK11783 681 KTLPPDFA 688 (702)
T ss_pred CCCCCCCC
Confidence 66665553
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=133.70 Aligned_cols=153 Identities=14% Similarity=0.218 Sum_probs=113.7
Q ss_pred eeccCCcc-ccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 11 VSSHPEVY-EPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~~~-~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|..| ++... ++.+++.+++.+. ..++.+|||+|||+|.+++.++.. ...|+|+|+|+.+++.|++
T Consensus 267 f~~~~~~F~q~n~~~~e~l~~~vl~~l~---~~~~~~VLDlgcGtG~~sl~la~~------~~~V~gvD~s~~al~~A~~ 337 (443)
T PRK13168 267 LAFSPRDFIQVNAQVNQKMVARALEWLD---PQPGDRVLDLFCGLGNFTLPLARQ------AAEVVGVEGVEAMVERARE 337 (443)
T ss_pred EEECCCCeEEcCHHHHHHHHHHHHHHhc---CCCCCEEEEEeccCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHH
Confidence 33444444 66655 7888888887764 246789999999999999988876 2489999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 89 TLEAHNVHA-DLINTDIASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
|+..+++.+ +++.+|+.+.... +.+++||+|++|||+.. ....++.+.+ ++|
T Consensus 338 n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g------------------------~~~~~~~l~~-~~~ 392 (443)
T PRK13168 338 NARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG------------------------AAEVMQALAK-LGP 392 (443)
T ss_pred HHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC------------------------hHHHHHHHHh-cCC
Confidence 999998765 8999999775432 23467999999999852 2344555554 699
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++++++.+.+...++.. +.+.||++..+.+
T Consensus 393 ~~ivyvSCnp~tlaRDl~~-L~~~gY~l~~i~~ 424 (443)
T PRK13168 393 KRIVYVSCNPATLARDAGV-LVEAGYRLKRAGM 424 (443)
T ss_pred CeEEEEEeChHHhhccHHH-HhhCCcEEEEEEE
Confidence 9999997766665556554 4467888776654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=9e-15 Score=122.04 Aligned_cols=133 Identities=24% Similarity=0.310 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
+..+++.+.... .++.+|||+|||+|.+++.+++. +. ..|+|+|+++.+++.|++|+..+++...+...+
T Consensus 106 t~~~l~~l~~~~-----~~~~~VLDiGcGsG~l~i~~~~~----g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~ 175 (250)
T PRK00517 106 TRLCLEALEKLV-----LPGKTVLDVGCGSGILAIAAAKL----GA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQ 175 (250)
T ss_pred HHHHHHHHHhhc-----CCCCEEEEeCCcHHHHHHHHHHc----CC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc
Confidence 455555555442 47899999999999988776654 33 269999999999999999999888743221110
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
.+.+||+|++|.. ...+..++..+.++|||||+++++........++.
T Consensus 176 --------~~~~fD~Vvani~------------------------~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~ 223 (250)
T PRK00517 176 --------GDLKADVIVANIL------------------------ANPLLELAPDLARLLKPGGRLILSGILEEQADEVL 223 (250)
T ss_pred --------CCCCcCEEEEcCc------------------------HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHH
Confidence 0127999999843 12356788999999999999999876666777889
Q ss_pred HHHHHcCCcEEEEEe
Q 025207 184 LQMMEKGYAARIVVQ 198 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~ 198 (256)
..+.+.||.......
T Consensus 224 ~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 224 EAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHCCCEEEEEEE
Confidence 999999998765444
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=124.38 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=108.7
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE
Q 025207 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL 99 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~ 99 (256)
|...++.+.+.+++.... ..++.+|||+|||+|.+++.+++. .++.+++++|+++++++.|+++.... +.++
T Consensus 93 ~~~~~e~~r~~~l~~~~l--~~~~~~VLDLGcGtG~~~l~La~~----~~~~~VtgVD~S~~mL~~A~~k~~~~--~i~~ 164 (340)
T PLN02490 93 PGHWTEDMRDDALEPADL--SDRNLKVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLK--ECKI 164 (340)
T ss_pred cCcchHHHHHHHHhhccc--CCCCCEEEEEecCCcHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHhhhcc--CCeE
Confidence 444456666666654321 246789999999999998877776 34568999999999999999876432 2378
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC----
Q 025207 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---- 175 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---- 175 (256)
+.+|+.+. ++.+++||+|+++..+.+.++ ...+++++.++|+|||+++++.+.
T Consensus 165 i~gD~e~l--p~~~~sFDvVIs~~~L~~~~d---------------------~~~~L~e~~rvLkPGG~LvIi~~~~p~~ 221 (340)
T PLN02490 165 IEGDAEDL--PFPTDYADRYVSAGSIEYWPD---------------------PQRGIKEAYRVLKIGGKACLIGPVHPTF 221 (340)
T ss_pred EeccHHhC--CCCCCceeEEEEcChhhhCCC---------------------HHHHHHHHHHhcCCCcEEEEEEecCcch
Confidence 88998765 333578999999876554332 356899999999999999886532
Q ss_pred ------------CCCHHHHHHHHHHcCCcEEEEEe
Q 025207 176 ------------ANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 176 ------------~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....+++.+++++.||+...+..
T Consensus 222 ~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 222 WLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred hHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 12457888999999998766553
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=124.24 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=84.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +.+|+|+|+++++++.|+++....++. .+++++|+.+.. +..+++||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~-~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA-QHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh-hhcCCCCCE
Confidence 45689999999999998887765 458999999999999999999887764 378899987753 234578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++.++.+..+ ...++..+.++|||||+++++..
T Consensus 116 V~~~~vl~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 116 ILFHAVLEWVAD---------------------PKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred EEehhHHHhhCC---------------------HHHHHHHHHHHcCCCeEEEEEEE
Confidence 999765543322 35789999999999999987643
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=122.55 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=83.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.+++.+++. +++|+|+|+++.+++.++++...++++..+...|+.... .+++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA---LNEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc---ccCCCCEEEE
Confidence 5689999999999999888864 468999999999999999998887776667777765432 1357999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.++++.+.. ....+++.+.++|+|||+++++.
T Consensus 101 ~~~~~~~~~~-------------------~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAG-------------------RVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHH-------------------HHHHHHHHHHHHhCCCcEEEEEE
Confidence 9887654321 25788999999999999966653
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=116.80 Aligned_cols=128 Identities=17% Similarity=0.289 Sum_probs=101.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-c-ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-H-ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++.+ .++.+|+++|+++.+++.+++|+..+++ . ..++.+|..+.... ..++||.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~---~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~-~~~~~D~ 114 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLV---GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-INEKFDR 114 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-cCCCCCE
Confidence 578999999999999999888764 2456899999999999999999998884 3 37888888765433 2468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
|+++... .....+++.+.+.|+|||++++.........++...+++.||..+.+
T Consensus 115 V~~~~~~------------------------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 115 IFIGGGS------------------------EKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred EEECCCc------------------------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEE
Confidence 9985321 12567899999999999999986665666678888888889865443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-15 Score=118.29 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=90.4
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eE
Q 025207 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DL 99 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~ 99 (256)
|+.++.+.+.+++.+... .++.+|||+|||+|.++++++.. . ..+|+++|+++.+++.+++|++.+++.. .+
T Consensus 34 Rp~~d~v~e~l~~~l~~~--~~~~~vLDl~~GsG~l~l~~lsr----~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~ 106 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV--IVDARCLDCFAGSGALGLEALSR----Y-AAGATLLEMDRAVAQQLIKNLATLKAGNARV 106 (199)
T ss_pred CcCCHHHHHHHHHHHhhh--cCCCEEEEcCCCccHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEE
Confidence 445566666666555321 35689999999999999865443 2 2489999999999999999999988754 89
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh--ccccCeEEEEEEe
Q 025207 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK--LLSKRGWLYLVTL 174 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~ 174 (256)
+++|+.+.+.. ...+||+|++||||... ....+++.+.. +|+|+|++++.+.
T Consensus 107 ~~~D~~~~l~~-~~~~fDlV~~DPPy~~g----------------------~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 107 VNTNALSFLAQ-PGTPHNVVFVDPPFRKG----------------------LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred EEchHHHHHhh-cCCCceEEEECCCCCCC----------------------hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 99999876532 23579999999998521 13344554443 4899999998654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-15 Score=126.26 Aligned_cols=127 Identities=16% Similarity=0.215 Sum_probs=96.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +++|+|+|+++++++.|+.+....+. ...++++|+.+.. ..+++||+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~--~~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA--DEGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--hccCCCCE
Confidence 35679999999999988777653 56999999999999999988766554 3488899987652 23578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------- 177 (256)
|++.-.+.+..+ ...+++.+.++|||||.+++.+....
T Consensus 202 Vi~~~vLeHv~d---------------------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~g 260 (322)
T PLN02396 202 VLSLEVIEHVAN---------------------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKG 260 (322)
T ss_pred EEEhhHHHhcCC---------------------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCC
Confidence 999655443332 46889999999999999998753211
Q ss_pred --------CHHHHHHHHHHcCCcEEEE
Q 025207 178 --------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 178 --------~~~~~~~~~~~~g~~~~~~ 196 (256)
..+++...+++.||+...+
T Consensus 261 th~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 261 THQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred CcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 2467788888888876554
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=124.92 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=87.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..+++.+. .|+++++|+|+|+.|++.|++++...+.. .+++++|+.+... ..+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~--~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIH--HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcC--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----CCCCE
Confidence 4678999999999999877776433 46889999999999999999999887654 4889999876521 35899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..+++.+.. ....+++++.+.|||||.+++...
T Consensus 129 vv~~~~l~~l~~~-------------------~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 129 VVLNFTLQFLEPS-------------------ERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EehhhHHHhCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9998766544322 146889999999999999999764
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-15 Score=120.69 Aligned_cols=129 Identities=14% Similarity=0.236 Sum_probs=89.7
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...+|+|.+....++ ... ..+.+|||+|||+|.+++.+++.+.. .+...|+++|+++.+++.|++|..
T Consensus 30 ~GqFfTP~~iAr~~~---i~~------~~~grVLDlG~GSG~Lalala~~~~~-~~~~~V~aVEID~~Al~~Ar~n~~-- 97 (241)
T PHA03412 30 LGAFFTPIGLARDFT---IDA------CTSGSVVDLCAGIGGLSFAMVHMMMY-AKPREIVCVELNHTYYKLGKRIVP-- 97 (241)
T ss_pred CCccCCCHHHHHHHH---Hhc------cCCCEEEEccChHHHHHHHHHHhccc-CCCcEEEEEECCHHHHHHHHhhcc--
Confidence 356788854333221 111 24689999999999999988876431 135689999999999999998853
Q ss_pred CCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 94 ~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
...++++|+.... .+++||+||+||||+....... .+...+......++..+.+++++|+.
T Consensus 98 --~~~~~~~D~~~~~---~~~~FDlIIsNPPY~~~~~~d~---------~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 98 --EATWINADALTTE---FDTLFDMAISNPPFGKIKTSDF---------KGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred --CCEEEEcchhccc---ccCCccEEEECCCCCCcccccc---------CCcccccHHHHHHHHHHHHHcCCCEE
Confidence 2478889987642 2468999999999997542110 11122445677889998886666664
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-15 Score=122.79 Aligned_cols=159 Identities=15% Similarity=0.121 Sum_probs=109.0
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.+.+...+..++..++. .+++.+|||+|||+|..+..++..+. ....|+++|+++.+++.+++|++++++
T Consensus 51 G~~~~qd~~s~~~~~~l~------~~~g~~VLDl~ag~G~kt~~la~~~~---~~g~v~a~D~~~~~l~~~~~n~~~~g~ 121 (264)
T TIGR00446 51 GLYYIQEASSMIPPLALE------PDPPERVLDMAAAPGGKTTQISALMK---NEGAIVANEFSKSRTKVLIANINRCGV 121 (264)
T ss_pred CeEEEECHHHHHHHHHhC------CCCcCEEEEECCCchHHHHHHHHHcC---CCCEEEEEcCCHHHHHHHHHHHHHcCC
Confidence 344555445555444333 25789999999999999999888754 235899999999999999999999987
Q ss_pred cc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEEE
Q 025207 96 HA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.+ .++..|...... ..+.||.|++|||+.... ...+.+...|.-..... .....++..+.++|||||+++
T Consensus 122 ~~v~~~~~D~~~~~~--~~~~fD~Vl~D~Pcsg~G---~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv 196 (264)
T TIGR00446 122 LNVAVTNFDGRVFGA--AVPKFDAILLDAPCSGEG---VIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV 196 (264)
T ss_pred CcEEEecCCHHHhhh--hccCCCEEEEcCCCCCCc---ccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 65 888888766432 235699999999986322 22233333221111111 134568999999999999999
Q ss_pred EEEeCCCCH--HHHHHHHHH
Q 025207 171 LVTLTANDP--SQICLQMME 188 (256)
Q Consensus 171 ~~~~~~~~~--~~~~~~~~~ 188 (256)
+++++.... +++.+.+.+
T Consensus 197 Ystcs~~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 197 YSTCSLEPEENEAVVDYLLE 216 (264)
T ss_pred EEeCCCChHHHHHHHHHHHH
Confidence 998876543 334444433
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-15 Score=124.38 Aligned_cols=121 Identities=25% Similarity=0.428 Sum_probs=93.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. + ..+|+|+|+++.+++.|++|+..+++.. .+...+... ..+++||+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~----g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~----~~~~~fDl 228 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL----G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ----PIEGKADV 228 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc----C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc----ccCCCceE
Confidence 46799999999999998877654 2 3489999999999999999999988764 444444222 22468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
|++|... ..+..++..+.++|||||+++++........++.+.+++. |....
T Consensus 229 Vvan~~~------------------------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 229 IVANILA------------------------EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred EEEecCH------------------------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cceee
Confidence 9998531 2356788999999999999999877666677788888765 76543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.8e-15 Score=123.86 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=114.8
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025207 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
++.|.+-.-.++..+.+. .. .++|..|||+.||||.+++++..+ |+.++|+|++..|++-|+.|+...++.
T Consensus 175 f~~p~s~~P~lAR~mVNL-a~--v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~i~ 245 (347)
T COG1041 175 FFRPGSMDPRLARAMVNL-AR--VKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYGIE 245 (347)
T ss_pred ccCcCCcCHHHHHHHHHH-hc--cccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhCcC
Confidence 444544444455555443 22 258899999999999999998877 779999999999999999999988866
Q ss_pred c-eEEEc-chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 97 A-DLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 97 ~-~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
. .+... |+.... +.+.+||.|+++|||......... .-...+..+++.+.++|++||++++..+
T Consensus 246 ~~~~~~~~Da~~lp--l~~~~vdaIatDPPYGrst~~~~~------------~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 246 DYPVLKVLDATNLP--LRDNSVDAIATDPPYGRSTKIKGE------------GLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ceeEEEecccccCC--CCCCccceEEecCCCCcccccccc------------cHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5 45555 877663 444579999999999876643211 1124578899999999999999999765
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEecC
Q 025207 175 TANDPSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 175 ~~~~~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
......+.+.+|++.......
T Consensus 312 -----~~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 312 -----RDPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred -----CcchhhHhhcCceEEEEEEEe
Confidence 223556667888876655443
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-14 Score=110.66 Aligned_cols=124 Identities=21% Similarity=0.319 Sum_probs=94.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|+|+|||||.+++.++.+ ++ ..|+|+|+++++++.+++|..+..-...++..|+.+. ...+|.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l----Ga-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-----~~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL----GA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-----RGKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc----CC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-----CCccceEE
Confidence 37889999999999999988876 33 4899999999999999999998655669999999876 46899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.||||...... ++ ..+++.+++.+. +++- .+.....+.+.+.....|+.+...+
T Consensus 114 mNPPFG~~~rh------aD---------r~Fl~~Ale~s~-------vVYs-iH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 114 MNPPFGSQRRH------AD---------RPFLLKALEISD-------VVYS-IHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ECCCCcccccc------CC---------HHHHHHHHHhhh-------eEEE-eeccccHHHHHHHHHhcCCeEEEEE
Confidence 99999754221 12 234556665542 3444 4445567888999999998776554
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=121.07 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=98.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..++.+++.. .+..+|+|+|+++.+++.|+++....+... +++.+|+.+. ++.+++||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~---g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l--~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRV---GPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL--PVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh---CCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC--CCCCCceeEE
Confidence 578999999999999877666653 345689999999999999999998877654 7888888764 2335789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------C
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------N 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------~ 177 (256)
+++..+.+.++ ...+++++.++|||||++++..... .
T Consensus 151 i~~~v~~~~~d---------------------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (272)
T PRK11873 151 ISNCVINLSPD---------------------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGAL 209 (272)
T ss_pred EEcCcccCCCC---------------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCC
Confidence 99876654332 3578999999999999999864211 1
Q ss_pred CHHHHHHHHHHcCCcEEEE
Q 025207 178 DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~ 196 (256)
...++.+++++.||....+
T Consensus 210 ~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 210 QEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred CHHHHHHHHHHCCCCceEE
Confidence 2346677777778776544
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=128.74 Aligned_cols=167 Identities=14% Similarity=0.193 Sum_probs=113.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhh--hcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEK--RLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD 117 (256)
.++.+|||+|||+|..++.++..+. +.+.|+++|+++.+++.+++|+.++|+.+ .++++|+.+.... ...++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~---~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMG---DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhC---CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 5789999999999999999888753 34589999999999999999999999865 8889998765321 2246899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc-
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK- 189 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~- 189 (256)
.|++|+|...... ..+.+...|...... ......++..+.++|||||++++++++.. ....+...++++
T Consensus 328 ~Vl~DaPCSg~G~---~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 328 RILLDAPCSGLGT---LHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred EEEEeCCCCcccc---cccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 9999999653221 122222222111100 11356889999999999999999887663 233456666665
Q ss_pred CCcEEE----EEecCCCCccEEEEEEEe
Q 025207 190 GYAARI----VVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 190 g~~~~~----~~~~~~~~~~~~l~~~~~ 213 (256)
+|.... +++..+..+.+|+....|
T Consensus 405 ~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 405 DWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred CcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 455331 223333445555555444
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=114.69 Aligned_cols=156 Identities=26% Similarity=0.343 Sum_probs=102.0
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----CceEEEEeCCHHHHHHHHHHHHH
Q 025207 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-----GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~-----~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
+.|.+-...++..++..-. + +++..|||+.||+|.++++.+.+.....| ...++|+|+++++++.|++|+..
T Consensus 7 ~~~a~L~~~lA~~ll~la~-~--~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 7 FGPAPLRPTLAAALLNLAG-W--RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp SSSTSS-HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC-C--CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 4455556677777776543 2 57789999999999999999888443221 11399999999999999999998
Q ss_pred cCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 93 HNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 93 ~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.++.. .+.++|+.+.. ..++++|.|++||||........ .....+..+++.+.++|++ ..++
T Consensus 84 ag~~~~i~~~~~D~~~l~--~~~~~~d~IvtnPPyG~r~~~~~-------------~~~~ly~~~~~~~~~~l~~-~~v~ 147 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELP--LPDGSVDAIVTNPPYGRRLGSKK-------------DLEKLYRQFLRELKRVLKP-RAVF 147 (179)
T ss_dssp TT-CGGEEEEE--GGGGG--GTTSBSCEEEEE--STTSHCHHH-------------HHHHHHHHHHHHHHCHSTT-CEEE
T ss_pred cccCCceEEEecchhhcc--cccCCCCEEEECcchhhhccCHH-------------HHHHHHHHHHHHHHHHCCC-CEEE
Confidence 88765 78888988874 34579999999999975433210 0134578889999999999 4444
Q ss_pred EEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025207 171 LVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+ +.... .+.+.+...++.....
T Consensus 148 l-~~~~~---~~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 148 L-TTSNR---ELEKALGLKGWRKRKL 169 (179)
T ss_dssp E-EESCC---CHHHHHTSTTSEEEEE
T ss_pred E-EECCH---HHHHHhcchhhceEEE
Confidence 4 33332 3456666655554433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=109.61 Aligned_cols=100 Identities=22% Similarity=0.387 Sum_probs=76.0
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEEC-CC
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN-PP 124 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~n-pP 124 (256)
|||+|||+|..+..++..+ ...+..+++|+|++++|++.++++....+.+.+++++|+.+.. ...++||+|++. ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~--~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP--FSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH--HHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc--ccCCCeeEEEEcCCc
Confidence 7999999999999998886 3335579999999999999999999887777799999998853 346799999993 32
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
+.+.++ .....+++.+.++|+|||
T Consensus 78 ~~~~~~-------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSP-------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSH-------------------HHHHHHHHHHHHTEEEEE
T ss_pred cCCCCH-------------------HHHHHHHHHHHHHhCCCC
Confidence 333222 237899999999999998
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-14 Score=127.14 Aligned_cols=164 Identities=18% Similarity=0.144 Sum_probs=111.9
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
.++.+.....+..++..++.. .++.+|||+|||+|..+..++..+. .+++|+|+|+++.+++.+++++...
T Consensus 228 ~~G~~~vqd~~s~l~~~~l~~------~~g~~VLDlgaG~G~kt~~la~~~~---~~~~V~avD~s~~~l~~~~~~~~~~ 298 (445)
T PRK14904 228 KLGLVSVQNPTQALACLLLNP------QPGSTVLDLCAAPGGKSTFMAELMQ---NRGQITAVDRYPQKLEKIRSHASAL 298 (445)
T ss_pred hCcEEEEeCHHHHHHHHhcCC------CCCCEEEEECCCCCHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHHHHHh
Confidence 344455544444444433332 4778999999999999988888653 2458999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeE
Q 025207 94 NVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~ 168 (256)
|+.. +++++|+..... +++||.|+++||+..... ..+.++..|....... .....++..+.++|||||+
T Consensus 299 g~~~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcsg~g~---~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 299 GITIIETIEGDARSFSP---EEQPDAILLDAPCTGTGV---LGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred CCCeEEEEeCccccccc---CCCCCEEEEcCCCCCcch---hhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 8865 888999876532 368999999999754322 1122222222111111 1345789999999999999
Q ss_pred EEEEEeCCCCH---HHHHHHHHHc-CCc
Q 025207 169 LYLVTLTANDP---SQICLQMMEK-GYA 192 (256)
Q Consensus 169 l~~~~~~~~~~---~~~~~~~~~~-g~~ 192 (256)
+++++++.... ..+..+++.+ ++.
T Consensus 373 lvystcs~~~~Ene~~v~~~l~~~~~~~ 400 (445)
T PRK14904 373 LVYATCSIEPEENELQIEAFLQRHPEFS 400 (445)
T ss_pred EEEEeCCCChhhHHHHHHHHHHhCCCCE
Confidence 99999876532 2445556554 344
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=126.51 Aligned_cols=130 Identities=22% Similarity=0.195 Sum_probs=103.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..+..+||||||+|.+++.+|.. .|+..++|+|+++.+++.|.+++..+++.+ .++++|+......+.++++|.|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~----~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKN----NPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 35679999999999999988887 788899999999999999999999988876 8999998776544557899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
+++.|... +.. .+ .+.....++..+.++|+|||.+.+.+............+.+.
T Consensus 197 ~lnFPdPW-~Kk---------rH-----RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 197 FVHFPVPW-DKK---------PH-----RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred EEeCCCCc-ccc---------ch-----hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 99876321 111 00 112357899999999999999999887666666666666655
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=112.76 Aligned_cols=132 Identities=16% Similarity=0.164 Sum_probs=92.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh-hhcCCCccE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE-KRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~fD~ 118 (256)
.+++.+|||+|||+|.++..++... +...|+|+|+++.|++.+.+++... .+..++.+|+..... ....++||+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v----~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIV----EEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhccccCCE
Confidence 3678999999999999999888874 3458999999999999887776543 223778888765311 112356999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC------CC---CHHHHHHHHHHc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT------AN---DPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------~~---~~~~~~~~~~~~ 189 (256)
|+++.+. + .....+++.+.++|||||+++++.+. .. ...+..+.+++.
T Consensus 145 i~~d~~~---p--------------------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~a 201 (226)
T PRK04266 145 IYQDVAQ---P--------------------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEG 201 (226)
T ss_pred EEECCCC---h--------------------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHc
Confidence 9986431 0 01245688999999999999994221 11 112356888889
Q ss_pred CCcEEEEEec
Q 025207 190 GYAARIVVQR 199 (256)
Q Consensus 190 g~~~~~~~~~ 199 (256)
||+.......
T Consensus 202 GF~~i~~~~l 211 (226)
T PRK04266 202 GFEILEVVDL 211 (226)
T ss_pred CCeEEEEEcC
Confidence 9997765543
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=111.04 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=95.1
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.....++..+. ..++.+|||+|||+|.+++.++.. .++.+|+++|+++++++.+++|+..++... +++.+|+
T Consensus 27 ~v~~~l~~~l~---~~~~~~VLDiG~G~G~~~~~la~~----~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~ 99 (196)
T PRK07402 27 EVRLLLISQLR---LEPDSVLWDIGAGTGTIPVEAGLL----CPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA 99 (196)
T ss_pred HHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence 33334445442 246789999999999999888766 566799999999999999999999888754 8888888
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHH
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 184 (256)
.+.... ....+|.++.+.. .....+++.+.++|+|||++++.........++.+
T Consensus 100 ~~~~~~-~~~~~d~v~~~~~-------------------------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~ 153 (196)
T PRK07402 100 PECLAQ-LAPAPDRVCIEGG-------------------------RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISE 153 (196)
T ss_pred HHHHhh-CCCCCCEEEEECC-------------------------cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHH
Confidence 664322 1234677655311 01468899999999999999998765554455666
Q ss_pred HHHHc
Q 025207 185 QMMEK 189 (256)
Q Consensus 185 ~~~~~ 189 (256)
.+...
T Consensus 154 ~~~~~ 158 (196)
T PRK07402 154 GLAQL 158 (196)
T ss_pred HHHhc
Confidence 66554
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=120.89 Aligned_cols=126 Identities=19% Similarity=0.197 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
...++.+++.+. ..++.+|||+|||+|.++..++.. +.+++++|+++.+++.++++.. ...++.+|+
T Consensus 28 ~~~a~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~ 94 (251)
T PRK10258 28 RQSADALLAMLP---QRKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDA----ADHYLAGDI 94 (251)
T ss_pred HHHHHHHHHhcC---ccCCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCC----CCCEEEcCc
Confidence 334444555543 245789999999999987666543 4689999999999999988642 236788888
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHH
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 184 (256)
.+. ++.+++||+|+++.++...++ ...++.++.++|+|||.+++++.......++..
T Consensus 95 ~~~--~~~~~~fD~V~s~~~l~~~~d---------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~ 151 (251)
T PRK10258 95 ESL--PLATATFDLAWSNLAVQWCGN---------------------LSTALRELYRVVRPGGVVAFTTLVQGSLPELHQ 151 (251)
T ss_pred ccC--cCCCCcEEEEEECchhhhcCC---------------------HHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHH
Confidence 764 334578999999877643322 468899999999999999998766554444444
Q ss_pred HH
Q 025207 185 QM 186 (256)
Q Consensus 185 ~~ 186 (256)
.+
T Consensus 152 ~~ 153 (251)
T PRK10258 152 AW 153 (251)
T ss_pred HH
Confidence 43
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-14 Score=105.22 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+.+.+++.+. ..++.+|||+|||+|.++..+++. .++++++++|+++.+++.+++++..++... .++.+|
T Consensus 5 ~~~~~~~~~~~~---~~~~~~vldlG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 77 (124)
T TIGR02469 5 REVRALTLSKLR---LRPGDVLWDIGAGSGSITIEAARL----VPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGD 77 (124)
T ss_pred HHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHH----CCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecc
Confidence 344455555542 245679999999999999888876 566799999999999999999998877654 777788
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+...... ...+||.|++..+. .....+++.+.+.|+|||++++..
T Consensus 78 ~~~~~~~-~~~~~D~v~~~~~~------------------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 78 APEALED-SLPEPDRVFIGGSG------------------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ccccChh-hcCCCCEEEECCcc------------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 6643222 23689999985321 114688999999999999999853
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-15 Score=122.71 Aligned_cols=99 Identities=24% Similarity=0.296 Sum_probs=81.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. .|+++|+|+|+++.|++.|+++ ..+++.+|+.+.. .+++||+|+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~----~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~---~~~~fD~v~ 94 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARR----WPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK---PKPDTDVVV 94 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC---CCCCceEEE
Confidence 57899999999999998877776 5778999999999999998763 2378889987652 247899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++..+++.++ ...++.++.+.|||||++++..
T Consensus 95 ~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVPE---------------------HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCCC---------------------HHHHHHHHHHhCCCCcEEEEEc
Confidence 9988765543 4678999999999999999864
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-14 Score=119.95 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=81.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|..+..++.. . +++|+|+|+++.+++.|+++... .....+..+|+.+. ++.+++||+|+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~----~-~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~--~~~~~~FD~V~ 122 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEK----Y-GAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKK--DFPENTFDMIY 122 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhh----c-CCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccC--CCCCCCeEEEE
Confidence 57889999999999987777653 2 56999999999999999987653 22347888888654 33457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.+. .....+++++.++|||||++++...
T Consensus 123 s~~~l~h~~~-------------------~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 123 SRDAILHLSY-------------------ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EhhhHHhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9654433221 1257889999999999999999764
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-14 Score=117.77 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=86.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..+++.+. .|+++++|+|+++.|++.|++++...+. ..+++++|+.+... ..+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~--~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNIN--QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcC--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----CCCCE
Confidence 4678999999999999888877643 3678999999999999999999876543 34889999877532 35899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..+++.+.. ....+++++.+.|+|||.+++..+
T Consensus 126 v~~~~~l~~~~~~-------------------~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 126 VILNFTLQFLPPE-------------------DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EeeecchhhCCHH-------------------HHHHHHHHHHHhcCCCeEEEEeec
Confidence 9997665443321 146889999999999999999764
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-14 Score=123.02 Aligned_cols=150 Identities=14% Similarity=0.108 Sum_probs=104.8
Q ss_pred eeccCCcc-ccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 11 VSSHPEVY-EPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~~~-~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|+.| +.... .+.+++.+.+.+.. .++.+|||+|||+|.+++.++.. +..|+|+|+++.+++.|++
T Consensus 203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~---~~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~ 273 (374)
T TIGR02085 203 LVIRPQSFFQTNPKVAAQLYATARQWVRE---IPVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQ 273 (374)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHHHh---cCCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHH
Confidence 33444433 33333 45555555554321 34679999999999999888753 4589999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025207 89 TLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
|++.++++. +++.+|+.+.... ...+||+|++|||+... ...+++.+. .++|++
T Consensus 274 N~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~vi~DPPr~G~-----------------------~~~~l~~l~-~~~p~~ 328 (374)
T TIGR02085 274 SAQMLGLDNLSFAALDSAKFATA-QMSAPELVLVNPPRRGI-----------------------GKELCDYLS-QMAPKF 328 (374)
T ss_pred HHHHcCCCcEEEEECCHHHHHHh-cCCCCCEEEECCCCCCC-----------------------cHHHHHHHH-hcCCCe
Confidence 999998854 8999999876533 22469999999997311 134445444 379999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 168 WLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++++.+.+...++..+ .||....+.
T Consensus 329 ivyvsc~p~TlaRDl~~L---~gy~l~~~~ 355 (374)
T TIGR02085 329 ILYSSCNAQTMAKDIAEL---SGYQIERVQ 355 (374)
T ss_pred EEEEEeCHHHHHHHHHHh---cCceEEEEE
Confidence 999977666656665555 578776654
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=123.63 Aligned_cols=142 Identities=17% Similarity=0.140 Sum_probs=100.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE--EEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL--INTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..++..+ ++++|+|+|+++.+++.+++|++..|+...+ ..+|..........++||.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~----~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELA----PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCE
Confidence 578999999999999999988874 3569999999999999999999998876533 5566543321112468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
|++++|+.....- .+.+...|..... -......++..+.++|||||++++++++.. ....+...++++
T Consensus 313 VllDaPcSg~G~~---~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 313 ILLDAPCSATGVI---RRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred EEEcCCCCCCccc---ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 9999997654321 1222222221111 112356789999999999999999998774 334455666655
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=112.62 Aligned_cols=132 Identities=19% Similarity=0.232 Sum_probs=94.2
Q ss_pred ccCCccccCCc--hHHHHHHHHHh-hcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 13 SHPEVYEPCDD--SFALVDALLAD-RINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 13 ~~~~~~~p~~~--~~~l~~~l~~~-~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
......+|+++ .+.+.+++... + ++.+|||+.||||.++++++.. + ...|+.+|.++.+++.+++|
T Consensus 16 p~~~~~RPT~drvrealFniL~~~~~------~g~~vLDLFaGSGalGlEALSR----G-A~~v~fVE~~~~a~~~i~~N 84 (183)
T PF03602_consen 16 PKGDNTRPTTDRVREALFNILQPRNL------EGARVLDLFAGSGALGLEALSR----G-AKSVVFVEKNRKAIKIIKKN 84 (183)
T ss_dssp TT--TS-SSSHHHHHHHHHHHHCH-H------TT-EEEETT-TTSHHHHHHHHT----T--SEEEEEES-HHHHHHHHHH
T ss_pred CCCCCcCCCcHHHHHHHHHHhccccc------CCCeEEEcCCccCccHHHHHhc----C-CCeEEEEECCHHHHHHHHHH
Confidence 34467788877 66667766665 3 6899999999999999998776 2 24899999999999999999
Q ss_pred HHHcCCcc--eEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hcc
Q 025207 90 LEAHNVHA--DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLL 163 (256)
Q Consensus 90 ~~~~~~~~--~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~L 163 (256)
++..+... .++..|....+... ...+||+|+++|||.... .+..++..+. .+|
T Consensus 85 ~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~---------------------~~~~~l~~l~~~~~l 143 (183)
T PF03602_consen 85 LEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL---------------------YYEELLELLAENNLL 143 (183)
T ss_dssp HHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH---------------------HHHHHHHHHHHTTSE
T ss_pred HHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccch---------------------HHHHHHHHHHHCCCC
Confidence 99988765 88899987776543 367899999999996321 1355666665 789
Q ss_pred ccCeEEEEEEeCC
Q 025207 164 SKRGWLYLVTLTA 176 (256)
Q Consensus 164 kpgG~l~~~~~~~ 176 (256)
+++|.+++-+...
T Consensus 144 ~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 144 NEDGLIIIEHSKK 156 (183)
T ss_dssp EEEEEEEEEEETT
T ss_pred CCCEEEEEEecCC
Confidence 9999999965433
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=119.13 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=104.4
Q ss_pred eccCCcc-ccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 12 SSHPEVY-EPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 12 ~~~~~~~-~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.|..| +.... .+.+++.+.+.+.. .++.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|++|
T Consensus 144 ~~~~~sF~Q~n~~~~~~l~~~v~~~l~~---~~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~n 214 (315)
T PRK03522 144 FIRPQSFFQTNPAVAAQLYATARDWVRE---LPPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQS 214 (315)
T ss_pred EECCCeeeecCHHHHHHHHHHHHHHHHh---cCCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHHH
Confidence 3444443 33332 45566655555432 25689999999999999888874 45899999999999999999
Q ss_pred HHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 90 LEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 90 ~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
+..+++.. +++++|+.+.... ..+.||+|++|||..-. ...+++.+ ..++|+++
T Consensus 215 ~~~~~l~~v~~~~~D~~~~~~~-~~~~~D~Vv~dPPr~G~-----------------------~~~~~~~l-~~~~~~~i 269 (315)
T PRK03522 215 AAELGLTNVQFQALDSTQFATA-QGEVPDLVLVNPPRRGI-----------------------GKELCDYL-SQMAPRFI 269 (315)
T ss_pred HHHcCCCceEEEEcCHHHHHHh-cCCCCeEEEECCCCCCc-----------------------cHHHHHHH-HHcCCCeE
Confidence 99999864 8999999876432 23579999999995311 12233333 33688888
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 169 LYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
+++++.+.....++..+ .||+...+.
T Consensus 270 vyvsc~p~t~~rd~~~l---~~y~~~~~~ 295 (315)
T PRK03522 270 LYSSCNAQTMAKDLAHL---PGYRIERVQ 295 (315)
T ss_pred EEEECCcccchhHHhhc---cCcEEEEEE
Confidence 88877666666666554 477776654
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=109.97 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=107.1
Q ss_pred hHHHHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEE
Q 025207 24 SFALVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLI 100 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~ 100 (256)
...+++|+.+.+.... .+...+|||+|||+|.++..+++. .-...++|+|+++++++.|+...++.+.++ ++.
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~e----gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~ 123 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKE----GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQ 123 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHh----cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEE
Confidence 5667788777764111 233449999999999998777765 444579999999999999988888888875 899
Q ss_pred EcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH
Q 025207 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 180 (256)
+.|+.++ .+..+.||+|+---.|-..+-.. .+..+. +.-++..+.++|+|||++++..+++. ..
T Consensus 124 q~DI~~~--~~~~~qfdlvlDKGT~DAisLs~-----------d~~~~r--~~~Y~d~v~~ll~~~gifvItSCN~T-~d 187 (227)
T KOG1271|consen 124 QLDITDP--DFLSGQFDLVLDKGTLDAISLSP-----------DGPVGR--LVVYLDSVEKLLSPGGIFVITSCNFT-KD 187 (227)
T ss_pred EeeccCC--cccccceeEEeecCceeeeecCC-----------CCcccc--eeeehhhHhhccCCCcEEEEEecCcc-HH
Confidence 9999886 45567888887643332211100 011111 23457778889999999999888776 77
Q ss_pred HHHHHHHHcCCcE
Q 025207 181 QICLQMMEKGYAA 193 (256)
Q Consensus 181 ~~~~~~~~~g~~~ 193 (256)
++...+...+|..
T Consensus 188 ELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 188 ELVEEFENFNFEY 200 (227)
T ss_pred HHHHHHhcCCeEE
Confidence 8889998888754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-14 Score=129.04 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=84.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.+++.+++. . +++++|+|+|+.+++.|+++.........++.+|+.... +.+++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~----~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAEN----F-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT--YPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHh----c-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--CCCCCEEEEE
Confidence 46789999999999998877765 2 569999999999999999887544434588899987652 2357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.-.+.+.++ ...++.++.++|||||++++...
T Consensus 338 s~~~l~h~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 338 SRDTILHIQD---------------------KPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ECCcccccCC---------------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 9766654433 46889999999999999998753
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-14 Score=115.76 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+++.+++.+. ..++.+|||+|||+|.++..+++... ++.+|+++|+++++++.|++++..++++. +++.+|
T Consensus 63 p~~~~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~---~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 63 PHMVAMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVG---RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred HHHHHHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 345556666553 35789999999999999988888743 24579999999999999999999988764 899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.+.... ..+||+|+++++. ..+...+.+.|+|||++++..
T Consensus 137 ~~~~~~~--~~~fD~Ii~~~~~---------------------------~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 137 GTQGWEP--LAPYDRIYVTAAG---------------------------PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCcc--cCCCCEEEEcCCc---------------------------ccccHHHHHhcCcCcEEEEEE
Confidence 8765432 3689999997653 223445678899999999843
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-14 Score=124.72 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=97.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..++.++..+. ++++|+++|+++.+++.+++|+.+.|+.. .+..+|..... ...+++||.|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~---~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-~~~~~~fD~V 311 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMK---DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT-EYVQDTFDRI 311 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh-hhhhccCCEE
Confidence 5788999999999999998888753 35699999999999999999999998865 88899987642 2234689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++|+|+...... ...+...|...... ......++..+.++|||||++++++++..
T Consensus 312 l~DaPCsg~G~~---~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 312 LVDAPCTSLGTA---RNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EECCCCCCCccc---cCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 999999654331 12222222111111 12456789999999999999999998765
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=121.62 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=82.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. .++++|+|+|+++.+++.|++++. ...++.+|+..... ..+||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~----~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~~---~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVER----WPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQP---PQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccCC---CCCccEEE
Confidence 57799999999999998888876 567799999999999999988742 23788888876532 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..+.+.++ ...+++.+.+.|||||++++..+
T Consensus 99 ~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 99 ANASLQWLPD---------------------HLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EccChhhCCC---------------------HHHHHHHHHHhcCCCcEEEEECC
Confidence 9987654432 46789999999999999998654
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-15 Score=104.42 Aligned_cols=95 Identities=23% Similarity=0.302 Sum_probs=73.6
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCC
Q 025207 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 47 LDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
||+|||+|..+..+++. ++.+++++|+++++++.++++....+. .+..+|+.+. ++.+++||+|+++--+.
T Consensus 1 LdiG~G~G~~~~~l~~~-----~~~~v~~~D~~~~~~~~~~~~~~~~~~--~~~~~d~~~l--~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-----GGASVTGIDISEEMLEQARKRLKNEGV--SFRQGDAEDL--PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-----TTCEEEEEES-HHHHHHHHHHTTTSTE--EEEESBTTSS--SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHhcccccCc--hheeehHHhC--cccccccccccccccee
Confidence 89999999987777664 567999999999999999998754333 4889998887 55579999999975544
Q ss_pred CCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 127 PTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+. .....+++++.++|||||++++
T Consensus 72 ~~---------------------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL---------------------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GS---------------------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ec---------------------cCHHHHHHHHHHHcCcCeEEeC
Confidence 33 1267899999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=114.33 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~ 102 (256)
..+.+.+++.+. ..++.+|||+|||+|..+..+++.+. ++++|+++|+++++++.|++|+..++.. .+++.+
T Consensus 58 p~~~~~~~~~l~---~~~~~~VLDiG~GsG~~~~~la~~~~---~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 58 PHMVAMMCELIE---PRPGMKILEVGTGSGYQAAVCAEAIE---RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred HHHHHHHHHhcC---CCCCCEEEEECcCccHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 445556666543 25778999999999999988887653 2458999999999999999999988865 388999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+.+..+. .++||+|+++... ..+...+.+.|+|||++++..
T Consensus 132 d~~~~~~~--~~~fD~Ii~~~~~---------------------------~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 132 DGKRGLEK--HAPFDAIIVTAAA---------------------------STIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CcccCCcc--CCCccEEEEccCc---------------------------chhhHHHHHhcCcCcEEEEEE
Confidence 98765433 4689999997543 233456778999999998843
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=122.41 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=84.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++++|||+|||+|..++.+++. +.+|+|+|+|+.+++.+++++..++++.++...|+..... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~---~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI---QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc---cCCccEEEE
Confidence 4569999999999998888774 4699999999999999999998888866788888765422 578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+..+++.+. .....+++.+.++|+|||+++++.
T Consensus 191 ~~vl~~l~~-------------------~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNR-------------------ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCH-------------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 876654332 126788999999999999977654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-14 Score=114.55 Aligned_cols=127 Identities=18% Similarity=0.202 Sum_probs=96.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++|||+|||+|..+..+++. +++++++|+|+++++++.+++++...++.. +++..|+..... +++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~----~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAER----HPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeeh
Confidence 47999999999998888776 567899999999999999999998877654 788888755421 368999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHHH
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQM 186 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~~ 186 (256)
.-.+.+.++ ...+++.+.++|+|||++++..... ....++.+.+
T Consensus 74 ~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 132 (224)
T smart00828 74 FEVIHHIKD---------------------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELL 132 (224)
T ss_pred HHHHHhCCC---------------------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHH
Confidence 533322211 4688999999999999999865421 1235677888
Q ss_pred HHcCCcEEEEEe
Q 025207 187 MEKGYAARIVVQ 198 (256)
Q Consensus 187 ~~~g~~~~~~~~ 198 (256)
.+.||.......
T Consensus 133 ~~~Gf~~~~~~~ 144 (224)
T smart00828 133 ARNNLRVVEGVD 144 (224)
T ss_pred HHCCCeEEEeEE
Confidence 889998765544
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-14 Score=129.34 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=90.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|..+..++.. .|+.+++|+|+++.|++.|+++....+.+..++++|+.+....+.+++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~----~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEE----TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 6789999999999987777665 678899999999999999999877666555788899877532245688999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++++.....-. ..+..........+++.+.++|||||++++...
T Consensus 494 n~vLH~L~syIp--------~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIE--------YEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcc--------cccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 987653211000 000000123467899999999999999999764
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-14 Score=122.12 Aligned_cols=191 Identities=17% Similarity=0.231 Sum_probs=109.4
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhc---ccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLG---QEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~---~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
..+|+|...+.++++++ . ..++.+|+|++||+|.+++++...+. .......++|+|+++.++..|+-|+.
T Consensus 26 G~~~TP~~i~~l~~~~~----~---~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLL----N---PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp GGC---HHHHHHHHHHH----T---T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHhhh----h---ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 45788955555555544 2 24678999999999999988887541 11246799999999999999999988
Q ss_pred HcCCcc---eEEEcchhhchhhhcCCCccEEEECCCCCCCC--Ccccccccchhhh-cCCCCcHHHHHHHHHHHhhcccc
Q 025207 92 AHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTP--EDEVGREGIASAW-AGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 92 ~~~~~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
.++... .+..+|............||+|++||||.... ..... ....... ....... ...++..+.+.|++
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~Fi~~~l~~Lk~ 175 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELE-KDERFKKYFPPKSNA--EYAFIEHALSLLKP 175 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGC-TTCCCTTCSSSTTEH--HHHHHHHHHHTEEE
T ss_pred hhccccccccccccccccccccccccccccccCCCCcccccccccccc-ccccccccCCCccch--hhhhHHHHHhhccc
Confidence 777544 48888876543221246899999999998762 22111 1111111 1111111 23478889999999
Q ss_pred CeEEEEEEeCC----C-CHHHHHHHHHHcCC-cEEEEEec-C--CCCccEEEEEEEecC
Q 025207 166 RGWLYLVTLTA----N-DPSQICLQMMEKGY-AARIVVQR-S--TEEENLHIIKFWRDF 215 (256)
Q Consensus 166 gG~l~~~~~~~----~-~~~~~~~~~~~~g~-~~~~~~~~-~--~~~~~~~l~~~~~~~ 215 (256)
||++.++.+.. . ....+++.+.+.+. ..+...+. . .......++.+.+..
T Consensus 176 ~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~ 234 (311)
T PF02384_consen 176 GGRAAIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKK 234 (311)
T ss_dssp EEEEEEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESS
T ss_pred ccceeEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeecc
Confidence 99998888743 1 23467777766543 22222221 1 123344555555555
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-13 Score=114.96 Aligned_cols=129 Identities=17% Similarity=0.082 Sum_probs=90.7
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchhhhcCCCcc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~fD 117 (256)
..++++|||+|||+|.++..++.. +++ .|+|+|.|+.++..++..-... .....+...++.+... ..+||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~----g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~---~~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH----GAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE---LYAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc----CCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC---CCCcC
Confidence 357899999999999987766654 333 7999999999987653322211 1223667777766532 25899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------------
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--------------------- 176 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------------- 176 (256)
+|+++-.+++..+ ...++.++++.|+|||.+++.+...
T Consensus 191 ~V~s~gvL~H~~d---------------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~ 249 (314)
T TIGR00452 191 TVFSMGVLYHRKS---------------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVY 249 (314)
T ss_pred EEEEcchhhccCC---------------------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccc
Confidence 9999876655433 4578999999999999999853210
Q ss_pred --CCHHHHHHHHHHcCCcEEEEE
Q 025207 177 --NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 --~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++..++++.||+...+.
T Consensus 250 flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 250 FIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEE
Confidence 024567788888999876654
|
Known examples to date are restricted to the proteobacteria. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-14 Score=111.41 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=82.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.++||+|||.|..++.+|+. |..|+++|+|+.+++.+.+.+...+++.+....|+.+... ++.||+|++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~---~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF---PEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS----TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc---cCCcCEEEE
Confidence 6789999999999999999987 7799999999999999999888888888889999877643 368999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-.+...... ....+++.+...++|||+.++++
T Consensus 101 t~v~~fL~~~-------------------~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMFLQRE-------------------LRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGGS-GG-------------------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeccCCHH-------------------HHHHHHHHHHhhcCCcEEEEEEE
Confidence 5444433322 26788999999999999988855
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.6e-14 Score=116.76 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=77.2
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
-+++.+|||||||.|.+++.+++. + +++|+|+.+|++..+.+++.+...|+.. ++...|..+. +.+||
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~----~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-----~~~fD 129 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAER----Y-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-----PGKFD 129 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHH----H---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------S-S
T ss_pred CCCCCEEEEeCCCccHHHHHHHHH----c-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-----CCCCC
Confidence 478999999999999999888887 4 6899999999999999999999988865 7888887664 24999
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.|++--.+-+. + ...+..+++.+.++|||||++++-..
T Consensus 130 ~IvSi~~~Ehv---------------g----~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 130 RIVSIEMFEHV---------------G----RKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp EEEEESEGGGT---------------C----GGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred EEEEEechhhc---------------C----hhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 99994222111 1 12378999999999999999987443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=120.16 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=108.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhhc--CCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRL--AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~~--~~~ 115 (256)
.+++|||+.|-||.+++.++.. |+ +|+++|+|..+++.|++|+..|+++. .++++|+++.+.... ..+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g------GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG------GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc------CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCc
Confidence 4899999999999999988875 44 89999999999999999999999864 899999999987643 348
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH-----HHHHHHHHcC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS-----QICLQMMEKG 190 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~g 190 (256)
||+||.+||=+..+.... ......+..++..+.++|+|||+++++++...... .+...+...+
T Consensus 291 fDlIilDPPsF~r~k~~~------------~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~ 358 (393)
T COG1092 291 FDLIILDPPSFARSKKQE------------FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAG 358 (393)
T ss_pred ccEEEECCcccccCcccc------------hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcC
Confidence 999999999776554331 11234578889999999999999999887655433 2334444455
Q ss_pred CcEEEEEecCC
Q 025207 191 YAARIVVQRST 201 (256)
Q Consensus 191 ~~~~~~~~~~~ 201 (256)
.....+.....
T Consensus 359 ~~~~~~~~~~~ 369 (393)
T COG1092 359 RRAQEIEGEGQ 369 (393)
T ss_pred CcEEEeeccCC
Confidence 55555543333
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=118.71 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=104.1
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
.+++++... ++.+++++.+.+. ..+.+|||++||+|.+++.+++.. ..|+|+|+++.+++.|++|+..+
T Consensus 182 ~sF~Q~N~~~~e~l~~~v~~~~~----~~~~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~ 251 (362)
T PRK05031 182 NSFTQPNAAVNEKMLEWALDATK----GSKGDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAAN 251 (362)
T ss_pred CCeeccCHHHHHHHHHHHHHHhh----cCCCeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHh
Confidence 456666665 7778888777653 123579999999999999888752 38999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhhc--------------CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH
Q 025207 94 NVHA-DLINTDIASGLEKRL--------------AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS 158 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~~--------------~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (256)
++++ +++.+|+.+.+.... ..+||+|+.|||+.-. ...+++.
T Consensus 252 ~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~-----------------------~~~~l~~ 308 (362)
T PRK05031 252 GIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL-----------------------DDETLKL 308 (362)
T ss_pred CCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCC-----------------------cHHHHHH
Confidence 9865 899999988654321 1258999999996210 2344555
Q ss_pred HhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 159 ADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 159 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
+.+ +++++++++.+.+...++..+. + ||....+..
T Consensus 309 l~~---~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v~~ 343 (362)
T PRK05031 309 VQA---YERILYISCNPETLCENLETLS-Q-THKVERFAL 343 (362)
T ss_pred HHc---cCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEEEE
Confidence 443 6888888665544444554443 3 788766553
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=112.14 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~ 102 (256)
.-.++..+++.+. ..++.+|||+|||+|.++..+++.++ ++++|+++|+++++++.+++++...+... +++.+
T Consensus 61 ~p~~~~~~~~~l~---~~~g~~VLdIG~GsG~~t~~la~~~~---~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g 134 (212)
T PRK13942 61 AIHMVAIMCELLD---LKEGMKVLEIGTGSGYHAAVVAEIVG---KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG 134 (212)
T ss_pred cHHHHHHHHHHcC---CCCcCEEEEECCcccHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 3455566666553 25789999999999999988887643 34699999999999999999999888754 89999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|......+ .+.||+|+++-.. ..+...+.+.|||||++++..
T Consensus 135 d~~~~~~~--~~~fD~I~~~~~~---------------------------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 DGTLGYEE--NAPYDRIYVTAAG---------------------------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcccCCCc--CCCcCEEEECCCc---------------------------ccchHHHHHhhCCCcEEEEEE
Confidence 98765432 4789999985321 223445677899999998843
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-12 Score=107.72 Aligned_cols=170 Identities=15% Similarity=0.205 Sum_probs=111.8
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.|+-+.. ...|+..|+.-+..++-+++.+|||+|||+|.++..++..+. +...|+++|+++.+.+.+.+..... .
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG---~~G~VyAVD~s~r~~~dLl~~ak~r-~ 181 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVG---PEGVVYAVEFSHRSGRDLTNMAKKR-P 181 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhC---CCCEEEEEECcHHHHHHHHHHhhhc-C
Confidence 3665555 778888887777766667889999999999999999998864 3458999999998665444433221 2
Q ss_pred cceEEEcchhhch-hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 96 HADLINTDIASGL-EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 96 ~~~~~~~d~~~~~-~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+..++..|+.... .....++||+|+++... ++ ....++.++.++|||||.+++...
T Consensus 182 NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~---pd--------------------q~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 182 NIVPIIEDARYPQKYRMLVPMVDVIFADVAQ---PD--------------------QARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CCEEEECCccChhhhhcccCCCCEEEEeCCC---cc--------------------hHHHHHHHHHHhccCCCEEEEEEe
Confidence 2377888876432 11123579999997531 11 134556778999999999999433
Q ss_pred CCC-----CHHHH----HHHHHHcCCcEEEEEe-cCCCCccEEEEEEEe
Q 025207 175 TAN-----DPSQI----CLQMMEKGYAARIVVQ-RSTEEENLHIIKFWR 213 (256)
Q Consensus 175 ~~~-----~~~~~----~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~ 213 (256)
... ..+++ .+++++.+|+...... ......+..++-..+
T Consensus 239 a~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 239 ANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYR 287 (293)
T ss_pred ccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence 211 12232 4778888998765443 333444544443333
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-13 Score=108.54 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=97.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhccc--CCCceEEEEeCCHHHHHHHHHHHHHcCCcc----eEEEcchhhchhhhcC
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQE--VPGVQYIATDINPYAVEVTRKTLEAHNVHA----DLINTDIASGLEKRLA 113 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~--~~~~~v~giD~~~~~i~~a~~~~~~~~~~~----~~~~~d~~~~~~~~~~ 113 (256)
+.++.++||++||||.+++-+...+... ..+.+|+.+|+||+|++.++++....++.. .++.+|+.+. ++.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L--pFdd 175 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL--PFDD 175 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC--CCCC
Confidence 4677999999999999998888876532 123689999999999999999987766543 7899999887 4778
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
.+||..+.-.-.-+.+ ..++.+++++++|||||++.+...+....+.+...+..+.|++
T Consensus 176 ~s~D~yTiafGIRN~t---------------------h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVT---------------------HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CcceeEEEecceecCC---------------------CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 9999998743222111 2678999999999999999987755543334444444444444
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.4e-13 Score=109.30 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=89.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+.+.+++.+. ..++.+|||+|||+|.++..++..+ .++++++|+|+++.+++.++++.........+...|+.
T Consensus 6 ~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~~a~~~---~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 6 RYRARTFELLA---VQPGDRVLDVGCGPGNDARELARRV---GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34455555443 2577899999999999988888763 25679999999999999999884333333478888876
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.. ++.+++||+|+++-.+.+..+ ...+++.+.++|+|||.+++..+
T Consensus 80 ~~--~~~~~~~D~v~~~~~~~~~~~---------------------~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GL--PFPDGSFDAVRSDRVLQHLED---------------------PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cC--CCCCCCceEEEEechhhccCC---------------------HHHHHHHHHHHhcCCcEEEEEec
Confidence 54 233578999999755543322 46789999999999999998664
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-13 Score=119.66 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=108.1
Q ss_pred eeccCCc-cccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 11 VSSHPEV-YEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~~-~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.+.. +++... ++.+++.+.+.+. ..++.+|||+|||+|.+++.++.. ...|+|+|+++.+++.|++
T Consensus 262 ~~~~~~~F~Q~N~~~~~~l~~~~~~~l~---~~~~~~vLDl~cG~G~~sl~la~~------~~~V~~vE~~~~av~~a~~ 332 (431)
T TIGR00479 262 FSLSARDFFQVNSGQNEKLVDRALEALE---LQGEELVVDAYCGVGTFTLPLAKQ------AKSVVGIEVVPESVEKAQQ 332 (431)
T ss_pred EEECCCceeecCHHHHHHHHHHHHHHhc---cCCCCEEEEcCCCcCHHHHHHHHh------CCEEEEEEcCHHHHHHHHH
Confidence 3444544 444444 6667777766653 245689999999999999998875 2389999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 89 TLEAHNVHA-DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
|+..+++.+ +++.+|+.+.+... ...+||+|++|||.... ...+++.+.+ ++|
T Consensus 333 n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~-----------------------~~~~l~~l~~-l~~ 388 (431)
T TIGR00479 333 NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC-----------------------AAEVLRTIIE-LKP 388 (431)
T ss_pred HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC-----------------------CHHHHHHHHh-cCC
Confidence 999998865 89999998765432 23579999999996311 1344554443 789
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++++++. ......-...+.+.||....+..
T Consensus 389 ~~ivyvsc~-p~tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 389 ERIVYVSCN-PATLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred CEEEEEcCC-HHHHHHHHHHHHHCCeeEEEEEE
Confidence 988887543 33333445556677887766553
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-13 Score=106.94 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=80.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-CC-Ccc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-AG-LVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-~~-~fD 117 (256)
++.+|||++||+|.++++++.. +. ..|+++|.++.+++.+++|++.++... +++.+|+.+.+.... .. .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr----ga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR----GA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC----CC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCce
Confidence 5789999999999999988876 32 389999999999999999999998753 899999977654322 22 489
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH--hhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA--DKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~ 173 (256)
+|+.+|||.... ...++..+ ..+|+++|++++-+
T Consensus 124 vv~~DPPy~~~~----------------------~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 124 VIYLDPPFFNGA----------------------LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEEECcCCCCCc----------------------HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 999999995311 23334333 34789999888744
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=111.84 Aligned_cols=126 Identities=21% Similarity=0.296 Sum_probs=91.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.++..+++.+.......+.+|||+|||+|.++..++.. ++..+++++|+++.+++.++++.. ....++.+|+.
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~ 90 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKR----FPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAE 90 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHh----CCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchh
Confidence 33444444443222234589999999999998888776 567789999999999999887654 13378888887
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
+.. +.+++||+|+++-.+.+..+ ...++..+.++|+|||.+++..+......+
T Consensus 91 ~~~--~~~~~fD~vi~~~~l~~~~~---------------------~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~ 143 (240)
T TIGR02072 91 KLP--LEDSSFDLIVSNLALQWCDD---------------------LSQALSELARVLKPGGLLAFSTFGPGTLHE 143 (240)
T ss_pred hCC--CCCCceeEEEEhhhhhhccC---------------------HHHHHHHHHHHcCCCcEEEEEeCCccCHHH
Confidence 653 33578999999765543322 467899999999999999997765544433
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-13 Score=115.14 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=76.0
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.-.+.++++.+..++.++..+......++.+|||+|||+|.+++.+++. +.+|+|+|+++.|++.++++....+
T Consensus 117 ~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~ 190 (315)
T PLN02585 117 KVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEAL 190 (315)
T ss_pred ceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcc
Confidence 3456777777777777776654211135789999999999998887764 4689999999999999999987642
Q ss_pred ------CcceEEEcchhhchhhhcCCCccEEEECCCCCCCC
Q 025207 95 ------VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 95 ------~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
....+...|+.+. +++||+|+|.-.+.+.+
T Consensus 191 ~~~~~~~~~~f~~~Dl~~l-----~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 191 AALPPEVLPKFEANDLESL-----SGKYDTVTCLDVLIHYP 226 (315)
T ss_pred cccccccceEEEEcchhhc-----CCCcCEEEEcCEEEecC
Confidence 1236777786543 47899999976554433
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=109.46 Aligned_cols=132 Identities=21% Similarity=0.306 Sum_probs=100.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhc-CCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~ 118 (256)
.....+||||||.|.+++.+|.. .|+..++|+|+....+..+.+.+...++++ .++++|+...+.... ++++|.
T Consensus 16 ~~~~l~lEIG~G~G~~l~~~A~~----~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 16 NDNPLILEIGCGKGEFLIELAKR----NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp SCCEEEEEET-TTSHHHHHHHHH----STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHH----CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchhe
Confidence 34459999999999999999888 899999999999999999999999999887 999999988776554 489999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
|..+.| ++-.+.+....++. ...++..+.++|+|||.+.+.+.......+..+.+...
T Consensus 92 i~i~FP-----DPWpK~rH~krRl~--------~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 92 IYINFP-----DPWPKKRHHKRRLV--------NPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp EEEES----------SGGGGGGSTT--------SHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred EEEeCC-----CCCcccchhhhhcC--------CchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 999765 11112222223332 47889999999999999999887666677778888774
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-14 Score=110.63 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=88.4
Q ss_pred ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCc
Q 025207 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 37 ~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f 116 (256)
.++.....+|.|+|||+|..+..+++. +|++.|+|+|.|++|++.|+++. .+.+|..+|+.+..++ ..+
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~R----wP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~p~---~~~ 93 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARR----WPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWKPE---QPT 93 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHh----CCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcCCC---Ccc
Confidence 344567899999999999987666555 99999999999999999997653 3458999999988654 689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
|++++|-.+...++ ...++..+...|.|||.+.+-.+..
T Consensus 94 dllfaNAvlqWlpd---------------------H~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 94 DLLFANAVLQWLPD---------------------HPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred chhhhhhhhhhccc---------------------cHHHHHHHHHhhCCCceEEEECCCc
Confidence 99999988776665 3577888999999999999966643
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=113.23 Aligned_cols=139 Identities=16% Similarity=0.102 Sum_probs=97.0
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchh
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIA 105 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~ 105 (256)
.+.+++.+. ..++++|||+|||+|.++..++.. +++ .|+|+|+++.++..++...... ..+..++.+|+.
T Consensus 111 ~~~l~~~l~---~l~g~~VLDIGCG~G~~~~~la~~----g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e 182 (322)
T PRK15068 111 WDRVLPHLS---PLKGRTVLDVGCGNGYHMWRMLGA----GAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE 182 (322)
T ss_pred HHHHHHhhC---CCCCCEEEEeccCCcHHHHHHHHc----CCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH
Confidence 344444443 246799999999999998877765 443 6999999999987554432222 223478888887
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC---C------
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---A------ 176 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~------ 176 (256)
+.. . +++||+|+|.-..++..+ ...+++++++.|+|||.+++.+.. .
T Consensus 183 ~lp--~-~~~FD~V~s~~vl~H~~d---------------------p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~ 238 (322)
T PRK15068 183 QLP--A-LKAFDTVFSMGVLYHRRS---------------------PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLV 238 (322)
T ss_pred HCC--C-cCCcCEEEECChhhccCC---------------------HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccC
Confidence 652 2 578999999655443322 467899999999999999875311 0
Q ss_pred --------------CCHHHHHHHHHHcCCcEEEEEe
Q 025207 177 --------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 --------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....++..++++.||....+..
T Consensus 239 p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 239 PGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred chhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 0235778899999998766553
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=107.52 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=83.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++..+. +..+++++|+++.+++.+++++..++.. ..++.+|+.+.. ..+++||+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~ 124 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVG---KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--FPDNSFDA 124 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--CCCCCccE
Confidence 3678999999999999888887631 1579999999999999999998765443 378888887653 23578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++.-+.+.++ ...+++.+.++|+|||.++++..
T Consensus 125 I~~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 125 VTIAFGLRNVPD---------------------IDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEEecccccCCC---------------------HHHHHHHHHHhccCCcEEEEEEe
Confidence 998644332221 46789999999999999988653
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=110.50 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=105.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|+|.|+|+|.++.+++..+ +|.++|+.+|+.++.++.|++|+...++.+ .+..+|+.+...+ ..||+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~v---g~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~---~~vDa 166 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAV---GPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE---EDVDA 166 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhh---CCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc---cccCE
Confidence 589999999999999999999865 466799999999999999999999988765 6777888776543 49999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
|+.+.|= ...+++.+.+.|||||.+++..|...+.......+++.||....
T Consensus 167 v~LDmp~--------------------------PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 167 VFLDLPD--------------------------PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred EEEcCCC--------------------------hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 9998761 35789999999999999999999888888999999999886543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-15 Score=106.76 Aligned_cols=98 Identities=22% Similarity=0.422 Sum_probs=62.2
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCC
Q 025207 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPY 125 (256)
Q Consensus 47 LDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~ 125 (256)
||+|||+|.++..+... .+..+++|+|+|+.|++.+++++....... .....+..+.......++||+|++.-.+
T Consensus 1 LdiGcG~G~~~~~l~~~----~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE----LPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHH----C-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999999998877777 577899999999999998888888766433 3333333333222223699999998766
Q ss_pred CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025207 126 VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
.+.++ ...+++.+.++|+|||++
T Consensus 77 ~~l~~---------------------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLED---------------------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S----------------------HHHHHHHHTTT-TSS-EE
T ss_pred hhhhh---------------------HHHHHHHHHHHcCCCCCC
Confidence 65422 678999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-13 Score=111.05 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=88.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
-++|.+|||||||.|.+++.+|+. + +++|+|+++|+++.+.+++.+...|+.. ++...|..++ .+.||
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~----y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-----~e~fD 139 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEE----Y-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-----EEPFD 139 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHH----c-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-----ccccc
Confidence 479999999999999999988887 4 7899999999999999999999999873 8888888776 35599
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
-|++---|-+ .+ ...+..++..+.++|+|||++++-+...
T Consensus 140 rIvSvgmfEh---------------vg----~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 140 RIVSVGMFEH---------------VG----KENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred eeeehhhHHH---------------hC----cccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 9999433222 11 1237899999999999999999855433
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-13 Score=115.68 Aligned_cols=145 Identities=18% Similarity=0.113 Sum_probs=98.4
Q ss_pred cceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025207 7 QIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+..++-.|+.|.-|.+...+-+...+....+ .++.+|||+|||+|..+..++..+.+ +.+++++|+|++|++.+
T Consensus 30 lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~---~~~~~~iDiS~~mL~~a 104 (301)
T TIGR03438 30 LFEQICELPEYYPTRTEAAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDISADALKES 104 (301)
T ss_pred HHHHHHCCCccccHHHHHHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhcc---CCeEEEEECCHHHHHHH
Confidence 34556678888877766666555544333222 35689999999999999888887532 46899999999999999
Q ss_pred HHHHHHc--CCcceEEEcchhhchhhhcC---CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh
Q 025207 87 RKTLEAH--NVHADLINTDIASGLEKRLA---GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK 161 (256)
Q Consensus 87 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~---~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (256)
++++... +++..++++|+.+...-... ....++++...+.+.+.. ....+++.+++
T Consensus 105 ~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~-------------------e~~~~L~~i~~ 165 (301)
T TIGR03438 105 AAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPE-------------------EAVAFLRRIRQ 165 (301)
T ss_pred HHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHH-------------------HHHHHHHHHHH
Confidence 9987653 34447789998764321111 122344444444433322 25688999999
Q ss_pred ccccCeEEEEEEeC
Q 025207 162 LLSKRGWLYLVTLT 175 (256)
Q Consensus 162 ~LkpgG~l~~~~~~ 175 (256)
.|+|||.+++-...
T Consensus 166 ~L~pgG~~lig~d~ 179 (301)
T TIGR03438 166 LLGPGGGLLIGVDL 179 (301)
T ss_pred hcCCCCEEEEeccC
Confidence 99999999985543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-13 Score=110.08 Aligned_cols=104 Identities=23% Similarity=0.266 Sum_probs=85.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~ 114 (256)
.++++|||+|||+|..++.++..+. ++++++++|+++++++.|++|++.+++.. +++.+|+.+.+.... .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~---~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALP---EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 3678999999999999888887653 35699999999999999999999999864 899999988765431 36
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+++.+ ...+..+++.+.++|+|||.+++
T Consensus 144 ~fD~VfiDa~------------------------k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 144 EFDFAFVDAD------------------------KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCEEEECCC------------------------HHHHHHHHHHHHHhcCCCeEEEE
Confidence 8999999743 12256788999999999999886
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-13 Score=110.29 Aligned_cols=128 Identities=20% Similarity=0.303 Sum_probs=101.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhc-hhhhcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASG-LEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~-~~~~~~~~fD 117 (256)
.||.+|||.|+|+|.++..++..++ |.++|+.+|..++.++.|++|++.+++.. .+.+.|+... .....+..+|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~---p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVG---PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHT---TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhC---CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCccc
Confidence 6999999999999999999998874 67799999999999999999999999863 8999998643 2222246799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc-ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL-SKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
.|+.+.|- ....+..+.+.| ++||+++...|...+.......+++.||..+.+
T Consensus 116 avfLDlp~--------------------------Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 116 AVFLDLPD--------------------------PWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp EEEEESSS--------------------------GGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEeCCC--------------------------HHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence 99998762 235588888899 899999998998888888999999999876543
Q ss_pred E
Q 025207 197 V 197 (256)
Q Consensus 197 ~ 197 (256)
.
T Consensus 170 ~ 170 (247)
T PF08704_consen 170 V 170 (247)
T ss_dssp E
T ss_pred E
Confidence 3
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=108.81 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=91.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|.++..++.. .|+.+++++|+++++++.|++++...+. ..+++.+|+.+.... .+++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTY----LPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV-HRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-CCCCCCE
Confidence 35789999999999988777776 6788999999999999999999865543 238899999887654 2468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHHcCCc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMMEKGYA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~g~~ 192 (256)
|++|. |.....+ .......+++.+.+.|+|||++++...... ......+.+++. |.
T Consensus 140 I~~D~-~~~~~~~----------------~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~-F~ 196 (262)
T PRK04457 140 ILVDG-FDGEGII----------------DALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESS-FE 196 (262)
T ss_pred EEEeC-CCCCCCc----------------cccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHh-cC
Confidence 99973 2111000 001136889999999999999998543222 223444555443 44
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-12 Score=104.28 Aligned_cols=106 Identities=20% Similarity=0.281 Sum_probs=81.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..+++. .+. ++++++|+++.+++.++++.. .....+++.+|+.+.. +.+++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~----~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~--~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKS----APDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALP--FEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHh----cCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCC--CCCCcEEEE
Confidence 46899999999999998888776 343 689999999999999998875 2223478888887753 234689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++..+.+.++ ...+++.+.+.|+|||+++++..
T Consensus 111 ~~~~~~~~~~~---------------------~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 111 TIAFGLRNVTD---------------------IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEeeeeCCccc---------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 98654432221 56789999999999999998653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.3e-13 Score=107.86 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=87.2
Q ss_pred CCccccCCchHHHHHHHHHhhcccc--cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLV--EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~--~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
.+.|.+|..++.+....++.+..+. ..++.+|||+|||+|.++..++.. .++.+++|+|+|+++++.|+++..
T Consensus 14 g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~----~~~~~v~giDiS~~~l~~A~~~~~- 88 (204)
T TIGR03587 14 GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRL----LPFKHIYGVEINEYAVEKAKAYLP- 88 (204)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHh----CCCCeEEEEECCHHHHHHHHhhCC-
Confidence 3457777765544444333332111 136689999999999998877765 456799999999999999988642
Q ss_pred cCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 93 HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 93 ~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
...+..+|+.+ ++.+++||+|+++-.+.+.+.. ....+++++.+++ ++.+++.
T Consensus 89 ---~~~~~~~d~~~---~~~~~sfD~V~~~~vL~hl~p~-------------------~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 89 ---NINIIQGSLFD---PFKDNFFDLVLTKGVLIHINPD-------------------NLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred ---CCcEEEeeccC---CCCCCCEEEEEECChhhhCCHH-------------------HHHHHHHHHHhhc--CcEEEEE
Confidence 23677888766 2346799999998766544321 2567888888876 4555554
Q ss_pred E
Q 025207 173 T 173 (256)
Q Consensus 173 ~ 173 (256)
.
T Consensus 142 e 142 (204)
T TIGR03587 142 E 142 (204)
T ss_pred E
Confidence 4
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-13 Score=107.72 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=76.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +..++|+|+++++++.|++++...+. ...+..+|+.+.. ++||+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ 122 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDI 122 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCE
Confidence 46799999999999998877664 45899999999999999999887765 3488888887652 68999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|++.-.+.+.+. .....++..+.+++++++.+.+
T Consensus 123 ii~~~~l~~~~~-------------------~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 123 VVCMDVLIHYPA-------------------SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEEhhHHHhCCH-------------------HHHHHHHHHHHHHhCCCEEEEE
Confidence 998544322221 1246678888888887666554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-13 Score=102.02 Aligned_cols=98 Identities=22% Similarity=0.378 Sum_probs=72.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++. ........+.... ...+++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~~--~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK---------RNVVFDNFDAQDP--PFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH---------TTSEEEEEECHTH--HCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh---------hhhhhhhhhhhhh--hccccchhhHh
Confidence 57899999999999987776554 3499999999999987 1112222222222 22358999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
++-.+.+.++ ...++..+.++|||||++++..+..
T Consensus 84 ~~~~l~~~~d---------------------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 84 CNDVLEHLPD---------------------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EESSGGGSSH---------------------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hHHHHhhccc---------------------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 9765544332 5789999999999999999988764
|
... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-12 Score=110.18 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=82.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. +|+.+++++|. +.+++.+++++...++.. +++.+|+.+... ..+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~----~~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH----FPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY----PEADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH----CCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC----CCCCE
Confidence 46689999999999999888887 78899999997 899999999999888754 789999875421 23699
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|++.-..+..++ .....+++++.+.|+|||++++...
T Consensus 219 v~~~~~lh~~~~-------------------~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 219 VLFCRILYSANE-------------------QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEeEhhhhcCCh-------------------HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 876432221111 2246789999999999999999764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=106.27 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..++.++++.+. ..++.+|||+|||+|.++..++... .+++++|+++++++.+++++...++.. ++..+|
T Consensus 64 p~~~~~l~~~l~---~~~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 64 PYMVARMTELLE---LKPGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred HHHHHHHHHhcC---CCCCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 444555555543 2578999999999999987766652 279999999999999999999888764 889999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+..+. .++||+|+++.+. ..+...+.+.|+|||++++..
T Consensus 135 ~~~~~~~--~~~fD~I~~~~~~---------------------------~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 135 GWKGWPA--YAPFDRILVTAAA---------------------------PEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred cccCCCc--CCCcCEEEEccCc---------------------------hhhhHHHHHhcCCCcEEEEEE
Confidence 7664332 3689999997542 233456778999999999854
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-13 Score=112.53 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=81.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
....+|||+|||+|.++..++..+... .++.++|+|+|+.+++.|+++. ....+..+|+.+. ++.+++||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~-~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~l--p~~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI-TTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRL--PFADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc-cCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccC--CCcCCceeEEE
Confidence 456889999999999988887764321 1357999999999999997753 1337888887764 34467999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
+... ...+.++.++|||||+++++.+......++...+
T Consensus 157 ~~~~----------------------------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 157 RIYA----------------------------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred EecC----------------------------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 8421 1225678899999999999888766555554443
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.1e-14 Score=113.45 Aligned_cols=103 Identities=24% Similarity=0.368 Sum_probs=77.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-------eEEEcchhhchhhhcCCC
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-------DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~ 115 (256)
+.+|||+|||+|.++..++++ +++|+|+|+++.+++.|++......... ++.+.++... .+.
T Consensus 90 g~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-----~~~ 158 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-----TGK 158 (282)
T ss_pred CceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-----ccc
Confidence 478999999999999999998 5699999999999999999855443322 3444444443 356
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
||.|+|--.+.|. .....++..+.++|||||++++.+....
T Consensus 159 fDaVvcsevleHV---------------------~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 159 FDAVVCSEVLEHV---------------------KDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred cceeeeHHHHHHH---------------------hCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 9999994222211 1257889999999999999999875443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-12 Score=103.23 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=86.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhch------hhhcC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGL------EKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~------~~~~~ 113 (256)
+++.+|||+|||+|.++..+++... +++.|+|+|+++ + +.. +..++++|+.+.. .++..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~---~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIG---DKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcC---CCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 5678999999999999988887742 456999999998 1 111 2378999987742 12345
Q ss_pred CCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025207 114 GLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 114 ~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
++||+|++++ |+... ... .... ........+++.+.++|+|||++++.........++...+.. .|.
T Consensus 116 ~~~D~V~S~~~~~~~g-~~~-----~d~~-----~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~ 183 (209)
T PRK11188 116 SKVQVVMSDMAPNMSG-TPA-----VDIP-----RAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFT 183 (209)
T ss_pred CCCCEEecCCCCccCC-ChH-----HHHH-----HHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-Cce
Confidence 7899999987 44311 110 0000 001123578999999999999999976655555566655544 344
Q ss_pred EEEEE
Q 025207 193 ARIVV 197 (256)
Q Consensus 193 ~~~~~ 197 (256)
...+.
T Consensus 184 ~v~~~ 188 (209)
T PRK11188 184 KVKVR 188 (209)
T ss_pred EEEEE
Confidence 43333
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=115.16 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=81.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||+|||+|.+++.+++. .+++|+|+|+|+++++.|+++.. +...++...|..+. +++||.|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~-----~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l-----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEH-----YGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL-----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc-----CCCCCEEE
Confidence 57899999999999998887765 25699999999999999999874 34456777776543 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.+. .....+++.+.++|||||++++...
T Consensus 234 s~~~~ehvg~-------------------~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 234 SVGMFEHVGP-------------------KNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EeCchhhCCh-------------------HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9765543321 2257889999999999999998654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=108.09 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=74.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++..+.+.+++++|+|+|++++|++.|+++....++ ++...+..... ..+++||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~l~--~~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--TFRQAVSDELV--AEGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC--eEEEEeccccc--ccCCCccEEE
Confidence 4678999999999999888887665556677999999999999999887654443 34444433221 1357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
++..+++.++.+ ...+++++.++++
T Consensus 135 ~~~~lhh~~d~~-------------------~~~~l~~~~r~~~ 159 (232)
T PRK06202 135 SNHFLHHLDDAE-------------------VVRLLADSAALAR 159 (232)
T ss_pred ECCeeecCChHH-------------------HHHHHHHHHHhcC
Confidence 998776655432 4567788888776
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-12 Score=110.91 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=100.3
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
++++... .+.+++++.+.+. ..+.+|||+|||+|.+++.++... ..|+|+|+++++++.|++|+..+++
T Consensus 175 F~Q~N~~~~~~l~~~v~~~~~----~~~~~vlDl~~G~G~~sl~la~~~------~~v~~vE~~~~av~~a~~n~~~~~~ 244 (353)
T TIGR02143 175 FTQPNAAVNIKMLEWACEVTQ----GSKGDLLELYCGNGNFSLALAQNF------RRVLATEIAKPSVNAAQYNIAANNI 244 (353)
T ss_pred cccCCHHHHHHHHHHHHHHhh----cCCCcEEEEeccccHHHHHHHHhC------CEEEEEECCHHHHHHHHHHHHHcCC
Confidence 4555554 5667777777653 123579999999999999888762 2899999999999999999999998
Q ss_pred cc-eEEEcchhhchhhhc--------C------CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025207 96 HA-DLINTDIASGLEKRL--------A------GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~~--------~------~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
.+ +++.+|+.+...... . ..||+|+.|||..- . ...+++.+.
T Consensus 245 ~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G---------------------~--~~~~l~~l~ 301 (353)
T TIGR02143 245 DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG---------------------L--DPDTCKLVQ 301 (353)
T ss_pred CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCC---------------------C--cHHHHHHHH
Confidence 65 899999988664310 1 23899999999420 0 234444443
Q ss_pred hccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++++|+++.+.+...++..+. .+|....+.
T Consensus 302 ---~~~~ivYvsC~p~tlaRDl~~L~--~~Y~l~~v~ 333 (353)
T TIGR02143 302 ---AYERILYISCNPETLKANLEQLS--ETHRVERFA 333 (353)
T ss_pred ---cCCcEEEEEcCHHHHHHHHHHHh--cCcEEEEEE
Confidence 37888888766555555655544 236665554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.9e-13 Score=121.93 Aligned_cols=172 Identities=16% Similarity=0.237 Sum_probs=108.9
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccC----CCceEEEEeCCHHHHHHHHHHH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEV----PGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~----~~~~v~giD~~~~~i~~a~~~~ 90 (256)
..+|+|...++.+++.+......-....+.+|||+|||+|.+++.++..+.... -+..++|+|+++.+++.++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 468999777777777766543211011467999999999999999988764211 1368999999999999999998
Q ss_pred HHcC-CcceEEEcchhhchh---hhcCCCccEEEECCCCCCCCCcccccc---------c-------------------c
Q 025207 91 EAHN-VHADLINTDIASGLE---KRLAGLVDVMVVNPPYVPTPEDEVGRE---------G-------------------I 138 (256)
Q Consensus 91 ~~~~-~~~~~~~~d~~~~~~---~~~~~~fD~Ii~npP~~~~~~~~~~~~---------~-------------------~ 138 (256)
...+ ....+.+.|...... ....+.||+||+||||........... . +
T Consensus 84 ~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (524)
T TIGR02987 84 GEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDP 163 (524)
T ss_pred hhcCCCCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhh
Confidence 7765 223555555443211 111357999999999987543211000 0 0
Q ss_pred hhhhcCCCCcHHHHHHH-HHHHhhccccCeEEEEEEeCC----CCHHHHHHHHHHc
Q 025207 139 ASAWAGGENGRAVIDKI-LPSADKLLSKRGWLYLVTLTA----NDPSQICLQMMEK 189 (256)
Q Consensus 139 ~~~~~~~~~~~~~~~~~-l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~ 189 (256)
...+ .|. + ..+..+ ++.+.++|++||++.++.|.. .....+++.+.+.
T Consensus 164 ~~~~-~g~-~-~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 164 IRKY-AGV-G-TEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred hccc-CCc-c-cHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 0000 011 1 133444 467899999999999988753 2344566666544
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=107.56 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=90.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhh-cCCCcc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKR-LAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~-~~~~fD 117 (256)
.+++|||+.|-||.+++.++.. ...+|+++|.|..+++.+++|+..|+++. +++..|+.+.+... ..++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-----GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-----GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-----TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCC
Confidence 6899999999999999987764 22379999999999999999999999763 89999999876543 357899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH-HHHHHHHHHcC
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP-SQICLQMMEKG 190 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~g 190 (256)
+||++||=+..... .. ...+.+++..+.++|+|||.+++++++.... +.+.+.+.+..
T Consensus 198 ~IIlDPPsF~k~~~-----~~----------~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a 256 (286)
T PF10672_consen 198 LIILDPPSFAKSKF-----DL----------ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAA 256 (286)
T ss_dssp EEEE--SSEESSTC-----EH----------HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHH
T ss_pred EEEECCCCCCCCHH-----HH----------HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence 99999996632211 11 1246788999999999999999888765543 34455554443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=107.14 Aligned_cols=104 Identities=19% Similarity=0.275 Sum_probs=87.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~ 114 (256)
.++++|||+|||+|..++.++..+. ++..++++|.++++++.|+++++..|+.. +++.+|+.+.++... .+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~---~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLP---ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 3679999999999999999998753 35689999999999999999999999864 899999988876531 36
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+.+.+ ...+..+++.+.++|+|||.+++
T Consensus 194 ~FD~VFIDa~------------------------K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 194 SYDFAFVDAD------------------------KRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCCEEEECCC------------------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 8999999754 12367889999999999999887
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=106.24 Aligned_cols=114 Identities=21% Similarity=0.286 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
-.++..+++.+. -+++.+|||||||+|+.+..++.+++ +...|+++|+++..++.|++++...+..+ .++.+|
T Consensus 58 P~~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg---~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 58 PSMVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVG---PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp HHHHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHS---TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred HHHHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcC---ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 455666666665 36899999999999999998888864 34589999999999999999999998865 899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.....+. .+.||.|+++... ..+-..+.+.|++||++++..
T Consensus 132 g~~g~~~--~apfD~I~v~~a~---------------------------~~ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 132 GSEGWPE--EAPFDRIIVTAAV---------------------------PEIPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGGTTGG--G-SEEEEEESSBB---------------------------SS--HHHHHTEEEEEEEEEEE
T ss_pred hhhcccc--CCCcCEEEEeecc---------------------------chHHHHHHHhcCCCcEEEEEE
Confidence 8877654 4789999996432 122344666799999999854
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-12 Score=100.25 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=95.4
Q ss_pred CccccCCc--hHHHHHHHHH-hhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 16 EVYEPCDD--SFALVDALLA-DRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 16 ~~~~p~~~--~~~l~~~l~~-~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
..++|+++ .+.+.+++.+ ++ .+.++||+.+|+|.++++++.. + ...++.+|.+..+++.+++|++.
T Consensus 20 ~~~RPT~drVREalFNil~~~~i------~g~~~LDlFAGSGaLGlEAlSR----G-A~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 20 PGTRPTTDRVREALFNILAPDEI------EGARVLDLFAGSGALGLEALSR----G-AARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred CCcCCCchHHHHHHHHhcccccc------CCCEEEEecCCccHhHHHHHhC----C-CceEEEEecCHHHHHHHHHHHHH
Confidence 47888887 6777777766 34 7899999999999999998876 2 34899999999999999999998
Q ss_pred cCCcc--eEEEcchhhchhhhcC-CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH--HhhccccCe
Q 025207 93 HNVHA--DLINTDIASGLEKRLA-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS--ADKLLSKRG 167 (256)
Q Consensus 93 ~~~~~--~~~~~d~~~~~~~~~~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG 167 (256)
.+... .++..|....+..... +.||+|+.+|||...- -.....+.. -...|+|+|
T Consensus 89 l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l--------------------~~~~~~~~~~~~~~~L~~~~ 148 (187)
T COG0742 89 LGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGL--------------------LDKELALLLLEENGWLKPGA 148 (187)
T ss_pred hCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccch--------------------hhHHHHHHHHHhcCCcCCCc
Confidence 88543 8888898866544322 3499999999996211 001122222 356799999
Q ss_pred EEEEEEe
Q 025207 168 WLYLVTL 174 (256)
Q Consensus 168 ~l~~~~~ 174 (256)
.+++-..
T Consensus 149 ~iv~E~~ 155 (187)
T COG0742 149 LIVVEHD 155 (187)
T ss_pred EEEEEeC
Confidence 9999543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-12 Score=118.74 Aligned_cols=140 Identities=20% Similarity=0.216 Sum_probs=98.1
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----------------------------
Q 025207 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP----------------------------- 69 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~----------------------------- 69 (256)
.|.+..+.++..++..- .+. .++..++|++||+|+++++++.+.....|
T Consensus 169 ~~Apl~etlAaa~l~~a-~w~-~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~ 246 (702)
T PRK11783 169 GEAPLKENLAAAILLRS-GWP-QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQE 246 (702)
T ss_pred CCCCCcHHHHHHHHHHc-CCC-CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHH
Confidence 35556788888888643 331 35789999999999999999886432111
Q ss_pred ---------CceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccc
Q 025207 70 ---------GVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGI 138 (256)
Q Consensus 70 ---------~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~ 138 (256)
...++|+|+++.+++.|++|+..+|+.. .+.++|+.+...+...++||+|++||||......+.
T Consensus 247 ~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~----- 321 (702)
T PRK11783 247 RARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEP----- 321 (702)
T ss_pred HHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchH-----
Confidence 2369999999999999999999999864 788999988644333357999999999986433210
Q ss_pred hhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 139 ASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.-...+.. +....+...+|+.+++++.
T Consensus 322 --------~l~~lY~~-lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 322 --------ALIALYSQ-LGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred --------HHHHHHHH-HHHHHHHhCCCCeEEEEeC
Confidence 00112333 3333344459999988764
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=102.38 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=83.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. ++.++++|+++.+++.+++++...+...+++..++.+.... ..++||+|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE-HPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh-cCCCccEEE
Confidence 46789999999999988776654 35899999999999999999887776557778887665322 347899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.++ ...+++.+.++|+|||++++..+
T Consensus 120 ~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 120 CMEMLEHVPD---------------------PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EhhHhhccCC---------------------HHHHHHHHHHHcCCCcEEEEEec
Confidence 9655443322 45778999999999999998654
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=114.70 Aligned_cols=154 Identities=20% Similarity=0.214 Sum_probs=118.5
Q ss_pred eeeccC-CccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 10 LVSSHP-EVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 10 ~~~~~~-~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
.+-+.+ ++|++.+. .+.|++++++.+.. .++.++||+-||.|.+++.+|+. ..+|+|+|+++++++.|+
T Consensus 262 ~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~~A~ 332 (432)
T COG2265 262 SFQISPRSFFQVNPAVAEKLYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVEAAQ 332 (432)
T ss_pred EEEeCCCCceecCHHHHHHHHHHHHHHHhh---cCCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHHHHH
Confidence 355667 89999988 88889988888753 46789999999999999998865 348999999999999999
Q ss_pred HHHHHcCCcc-eEEEcchhhchhhhc-CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 88 KTLEAHNVHA-DLINTDIASGLEKRL-AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 88 ~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
+|++.|++.+ .+..++..+...... ...+|.|+.|||= .|. -..+++.+.+ ++|
T Consensus 333 ~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR---------------------~G~--~~~~lk~l~~-~~p 388 (432)
T COG2265 333 ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR---------------------AGA--DREVLKQLAK-LKP 388 (432)
T ss_pred HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCC---------------------CCC--CHHHHHHHHh-cCC
Confidence 9999999986 899999988876542 3579999999992 111 1255666554 689
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
..++++++.+.+...+ ...+.+.|+.+..+.
T Consensus 389 ~~IvYVSCNP~TlaRD-l~~L~~~gy~i~~v~ 419 (432)
T COG2265 389 KRIVYVSCNPATLARD-LAILASTGYEIERVQ 419 (432)
T ss_pred CcEEEEeCCHHHHHHH-HHHHHhCCeEEEEEE
Confidence 9999997665554444 445556777655443
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=105.86 Aligned_cols=121 Identities=18% Similarity=0.121 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-----------
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA----------- 92 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~----------- 92 (256)
...+++++.... ..++.+|||+|||.|..++.+|.. +.+|+|+|+|+.+++.+......
T Consensus 20 ~~~l~~~~~~l~----~~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~ 89 (213)
T TIGR03840 20 NPLLVKHWPALG----LPAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFT 89 (213)
T ss_pred CHHHHHHHHhhC----CCCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccce
Confidence 455555443321 136689999999999998888875 67999999999999976332110
Q ss_pred --cCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 93 --HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 93 --~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.+...++.++|+.+.... ..+.||.|+..-.+.+.+. .....++..+.++|||||+++
T Consensus 90 ~~~~~~v~~~~~D~~~~~~~-~~~~fD~i~D~~~~~~l~~-------------------~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 90 RYRAGNIEIFCGDFFALTAA-DLGPVDAVYDRAALIALPE-------------------EMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred eeecCceEEEEccCCCCCcc-cCCCcCEEEechhhccCCH-------------------HHHHHHHHHHHHHcCCCCeEE
Confidence 012337889998876432 1357999987554443332 235788999999999999866
Q ss_pred EEEe
Q 025207 171 LVTL 174 (256)
Q Consensus 171 ~~~~ 174 (256)
+++.
T Consensus 150 l~~~ 153 (213)
T TIGR03840 150 LITL 153 (213)
T ss_pred EEEE
Confidence 6543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.4e-12 Score=106.21 Aligned_cols=109 Identities=18% Similarity=0.253 Sum_probs=81.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC------CcceEEEcchhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN------VHADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~~~ 114 (256)
..+++||++|||+|..+.++++. .+..+|+++|+++++++.|++.+...+ ...+++.+|+...... .++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~----~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH----PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC----CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCC
Confidence 46789999999999987766543 234589999999999999999886532 1238899999887654 457
Q ss_pred CccEEEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+|+++. |+.. .. ......+++.+.+.|+|||++++..
T Consensus 150 ~yDvIi~D~~dp~~~--~~-----------------~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 150 SFDVIIVDSTDPVGP--AE-----------------GLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred cccEEEECCCCCCCc--hh-----------------hhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 899999974 3311 00 0124678899999999999998743
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-13 Score=110.71 Aligned_cols=127 Identities=24% Similarity=0.314 Sum_probs=83.5
Q ss_pred hHHHHHHHHHhhcc-cccCCCCEEEEecccccHHHHHHHHHhcccC-----CCceEEEEeCCHHHHHHHHHHHHH----c
Q 025207 24 SFALVDALLADRIN-LVEHHPVLCMEVGCGSGYVITSLALMLGQEV-----PGVQYIATDINPYAVEVTRKTLEA----H 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~-~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~-----~~~~v~giD~~~~~i~~a~~~~~~----~ 93 (256)
...+.+.+++.+.. ....++.+|||+|||+|.-+..++..+.+.. ++.+|+|+|+|+.|++.|++.+.. .
T Consensus 80 ~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~ 159 (264)
T smart00138 80 FEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELE 159 (264)
T ss_pred HHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHh
Confidence 45555665554421 1123568999999999975443333332222 257899999999999999885410 0
Q ss_pred CC------------------------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025207 94 NV------------------------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 94 ~~------------------------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
++ ...+.+.|+.+... ..++||+|+|.-.+++.+.
T Consensus 160 ~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~crnvl~yf~~------------------- 218 (264)
T smart00138 160 DLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP--PLGDFDLIFCRNVLIYFDE------------------- 218 (264)
T ss_pred cCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC--ccCCCCEEEechhHHhCCH-------------------
Confidence 11 12677888877533 3578999999533332221
Q ss_pred HHHHHHHHHHhhccccCeEEEE
Q 025207 150 AVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.....++..+++.|+|||++++
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEE
Confidence 1256899999999999999998
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-12 Score=106.57 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=81.0
Q ss_pred CCCCEEEEecccccHHH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCCcc--eEEEcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNVHA--DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~-~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~~~--~~~~~d~~~~~~~~~~~~f 116 (256)
.++++|+|+|||.|-++ +.++. +.+|+++++|+|+++++++.|++.+.. .++.. +|+.+|+.+.... .+.|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa---~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~--l~~F 196 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAK---HHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES--LKEY 196 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHH---hcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc--cCCc
Confidence 47899999999977443 22222 226888999999999999999999964 56543 8999999875322 3689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|++. ..+..... ....+++.+.+.|+|||.+++-.
T Consensus 197 DlVF~~-ALi~~dk~-------------------~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 197 DVVFLA-ALVGMDKE-------------------EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CEEEEe-cccccccc-------------------cHHHHHHHHHHhcCCCcEEEEec
Confidence 999996 32222111 26789999999999999999844
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-12 Score=101.80 Aligned_cols=117 Identities=23% Similarity=0.294 Sum_probs=94.8
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eE
Q 025207 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DL 99 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~ 99 (256)
+++..+...+... ..+++|||+|++.|..++.++..+.. +++++++|+++++++.|++|+++.|+.. .+
T Consensus 45 ~e~g~~L~~L~~~------~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~ 115 (219)
T COG4122 45 PETGALLRLLARL------SGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIEL 115 (219)
T ss_pred hhHHHHHHHHHHh------cCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Confidence 4455555555554 37899999999999999999998542 6699999999999999999999999876 56
Q ss_pred EE-cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 100 IN-TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 100 ~~-~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+. +|..+.+.....++||+|+.+- +...+..+++.+.++|+|||.+++
T Consensus 116 ~~~gdal~~l~~~~~~~fDliFIDa------------------------dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 116 LLGGDALDVLSRLLDGSFDLVFIDA------------------------DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EecCcHHHHHHhccCCCccEEEEeC------------------------ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 66 5888887654568999999852 122367899999999999999997
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-12 Score=103.17 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=71.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||||.++..++.. . +.+|+|+|+|++|++.|++.. ..+++|+.+. ++.+++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~----~-~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~l--p~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKV----F-KYYVVALDYAENMLKMNLVAD-------DKVVGSFEAL--PFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHh----c-CCEEEEECCCHHHHHHHHhcc-------ceEEechhhC--CCCCCCEEEEEe
Confidence 4789999999999988777765 3 458999999999999987642 4567887765 455789999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
+....+.++ ...++++++++|||.+
T Consensus 117 ~~~l~~~~d---------------------~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 117 SFALHASDN---------------------IEKVIAEFTRVSRKQV 141 (226)
T ss_pred cChhhccCC---------------------HHHHHHHHHHHhcCce
Confidence 766543322 5688999999999953
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=101.61 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=86.4
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-c-eEEEcchhhchhhhcCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-A-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...|||+|||||..--.+ .+ -|.++|+++|.++.|-+.+.+.+.++... . .++.++..+. +...++++|.|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy-~~----~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFY-PW----KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccc-cC----CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cccccCCeeeEE
Confidence 356799999999863211 11 36789999999999999999999887533 3 5888988776 334579999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
+........+ ..+.|.+..++|+|||+++++.+..........++
T Consensus 151 ~TlvLCSve~---------------------~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~ 195 (252)
T KOG4300|consen 151 CTLVLCSVED---------------------PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRIL 195 (252)
T ss_pred EEEEEeccCC---------------------HHHHHHHHHHhcCCCcEEEEEecccccchHHHHHH
Confidence 9654432222 56889999999999999999887665444333333
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-11 Score=101.07 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=77.2
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchh
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIA 105 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~ 105 (256)
.+.+++.+......++.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++...+. ...+..+|+.
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 122 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch
Confidence 344444443211246789999999999998877764 34799999999999999999887766 3378888843
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
. .+++||+|++.-.+.+.+.. ....++..+.+.+++++++.
T Consensus 123 ~-----~~~~fD~v~~~~~l~~~~~~-------------------~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 123 S-----LLGRFDTVVCLDVLIHYPQE-------------------DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred h-----ccCCcCEEEEcchhhcCCHH-------------------HHHHHHHHHHhhcCCeEEEE
Confidence 2 24789999997655433221 14566777777665444433
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-11 Score=101.85 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=81.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+.+|||+|||+|.++..+++. +..++++|+++.+++.+++++..++. ...+...|+.+.... .+++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK-GAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC-CCCCccEEE
Confidence 4789999999999988777654 34699999999999999999888776 357888887765432 146899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..+.+..+ ...++..+.+.|++||.+++...
T Consensus 118 ~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVPD---------------------PQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCCC---------------------HHHHHHHHHHhcCCCcEEEEEec
Confidence 9644332221 46789999999999999988654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=102.15 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=86.8
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.++..+.+.+. .+++.+|||||||+|+.+..++++.+ +|+++|..+...+.|++|+...|..+ .+.++|.
T Consensus 59 ~~vA~m~~~L~---~~~g~~VLEIGtGsGY~aAvla~l~~------~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG 129 (209)
T COG2518 59 HMVARMLQLLE---LKPGDRVLEIGTGSGYQAAVLARLVG------RVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 (209)
T ss_pred HHHHHHHHHhC---CCCCCeEEEECCCchHHHHHHHHHhC------eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc
Confidence 34445555543 36899999999999999888888732 89999999999999999999999865 9999999
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....++ .+.||.|+..-- ...+-+.+.+-||+||++++..
T Consensus 130 ~~G~~~--~aPyD~I~Vtaa---------------------------a~~vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 130 SKGWPE--EAPYDRIIVTAA---------------------------APEVPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred ccCCCC--CCCcCEEEEeec---------------------------cCCCCHHHHHhcccCCEEEEEE
Confidence 887665 478999998422 1233445667799999999854
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=102.09 Aligned_cols=122 Identities=21% Similarity=0.224 Sum_probs=84.9
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+++..-.|.|+..++. ..+.+.+ +++..|+|+.||.|.+++.+++. .....|+++|++|.+++.+++|+
T Consensus 77 ~D~~kvyfs~rl~~Er--~Ri~~~v-----~~~e~VlD~faGIG~f~l~~ak~----~~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 77 VDLSKVYFSPRLSTER--RRIANLV-----KPGEVVLDMFAGIGPFSLPIAKH----GKAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp EETTTS---GGGHHHH--HHHHTC-------TT-EEEETT-TTTTTHHHHHHH----T-SSEEEEEES-HHHHHHHHHHH
T ss_pred EccceEEEccccHHHH--HHHHhcC-----CcceEEEEccCCccHHHHHHhhh----cCccEEEEecCCHHHHHHHHHHH
Confidence 4566666677654444 3444443 57899999999999999999985 44668999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..|++.. .++++|..+... .+.||.|++|.|.. ...++..+..++++||+
T Consensus 146 ~lNkv~~~i~~~~~D~~~~~~---~~~~drvim~lp~~-------------------------~~~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 146 RLNKVENRIEVINGDAREFLP---EGKFDRVIMNLPES-------------------------SLEFLDAALSLLKEGGI 197 (200)
T ss_dssp HHTT-TTTEEEEES-GGG------TT-EEEEEE--TSS-------------------------GGGGHHHHHHHEEEEEE
T ss_pred HHcCCCCeEEEEcCCHHHhcC---ccccCEEEECChHH-------------------------HHHHHHHHHHHhcCCcE
Confidence 9999876 789999988765 47899999998853 34678888899999998
Q ss_pred EEE
Q 025207 169 LYL 171 (256)
Q Consensus 169 l~~ 171 (256)
+.+
T Consensus 198 ihy 200 (200)
T PF02475_consen 198 IHY 200 (200)
T ss_dssp EEE
T ss_pred EEC
Confidence 753
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-12 Score=98.73 Aligned_cols=78 Identities=21% Similarity=0.144 Sum_probs=63.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++++|+++.+++.+++++... .+.+++++|+.+...+ +..||.|+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~~~~~-~~v~ii~~D~~~~~~~--~~~~d~vi 82 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFDLP--KLQPYKVV 82 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHHhccC-CCEEEEECchhcCCcc--ccCCCEEE
Confidence 46789999999999998888765 358999999999999999987542 1348999999876432 34699999
Q ss_pred ECCCCCC
Q 025207 121 VNPPYVP 127 (256)
Q Consensus 121 ~npP~~~ 127 (256)
+||||..
T Consensus 83 ~n~Py~~ 89 (169)
T smart00650 83 GNLPYNI 89 (169)
T ss_pred ECCCccc
Confidence 9999963
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=116.05 Aligned_cols=126 Identities=18% Similarity=0.181 Sum_probs=90.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+++... ......++++|+.....++.+++||+|+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~------~~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK------AGQVIALDFIESVIKKNESING-HYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHhc-cCCceEEEEecccccccCCCCCCEEEEe
Confidence 45689999999999999888875 2389999999999987654221 1112378888986433334457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQ 185 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~ 185 (256)
++.++++.++.+ ...+++++.++|||||++++..... .......+.
T Consensus 109 ~~~~l~~l~~~~-------------------~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 109 SNWLLMYLSDKE-------------------VENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKV 169 (475)
T ss_pred hhhhHHhCCHHH-------------------HHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHH
Confidence 998876554322 5788999999999999998854211 123456667
Q ss_pred HHHcCCc
Q 025207 186 MMEKGYA 192 (256)
Q Consensus 186 ~~~~g~~ 192 (256)
+.+.++.
T Consensus 170 f~~~~~~ 176 (475)
T PLN02336 170 FKECHTR 176 (475)
T ss_pred HHHheec
Confidence 7776654
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=103.49 Aligned_cols=182 Identities=16% Similarity=0.234 Sum_probs=85.7
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccccC--CCCEEEEecccccHH-HHHHHHHhcccCCCceEEEEeCCH
Q 025207 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLVEH--HPVLCMEVGCGSGYV-ITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~--~~~~VLDlGcG~G~~-~~~la~~l~~~~~~~~v~giD~~~ 80 (256)
.++++.-++.++.+.|... ..-++-|+.+.+...... ...++||||||..++ ++-.++ ..+|+++|+|+++
T Consensus 62 dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~-----~~~W~fvaTdID~ 136 (299)
T PF05971_consen 62 DFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAK-----LYGWSFVATDIDP 136 (299)
T ss_dssp HH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHH-----HH--EEEEEES-H
T ss_pred hcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhh-----hcCCeEEEecCCH
Confidence 4556644899999999877 555666777766542211 257999999999986 222222 2389999999999
Q ss_pred HHHHHHHHHHHHc-CCcc--eEEEcc----hhhchhhhcCCCccEEEECCCCCCCCCcccc---cc------------cc
Q 025207 81 YAVEVTRKTLEAH-NVHA--DLINTD----IASGLEKRLAGLVDVMVVNPPYVPTPEDEVG---RE------------GI 138 (256)
Q Consensus 81 ~~i~~a~~~~~~~-~~~~--~~~~~d----~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~---~~------------~~ 138 (256)
.+++.|++|+..| ++.. .++... +...... ..+.||+.+|||||+.+.+.... ++ .+
T Consensus 137 ~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p 215 (299)
T PF05971_consen 137 KSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPP 215 (299)
T ss_dssp HHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EEEEEE-----SS-------------------------
T ss_pred HHHHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceeeEEecCCccccChhhhcccccccccccccccccccCc
Confidence 9999999999999 7765 444332 2222211 24689999999999987764221 01 12
Q ss_pred hhhhcCCCC-------cHHHHHHHHHHHhhccccCeEEEE--EEeCCCCHHHHHHHHHHcCCcEE
Q 025207 139 ASAWAGGEN-------GRAVIDKILPSADKLLSKRGWLYL--VTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 139 ~~~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
...+.|... ...+..+++++...+ +.. +.++ ..........+.+.+++.+....
T Consensus 216 ~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~-~~~-v~WfTsmvgKkssL~~l~~~L~~~~~~~~ 278 (299)
T PF05971_consen 216 KLNFTGQSNELWCEGGEVAFVKRMIKESLQL-KDQ-VRWFTSMVGKKSSLKPLKKELKKLGATNY 278 (299)
T ss_dssp -------TTTTHHHHTHHHHHHHHHHHHHHH-GGG-EEEEEEEESSGGGHHHHHHHHHHTT-SEE
T ss_pred cccCCCCcceEEcCCccHHHHHHHHHHHHHh-CCC-cEEEeecccCcccHHHHHHHHHhcCCceE
Confidence 222222111 123566777766643 332 2222 22234456788888888876543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.2e-12 Score=100.95 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=85.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~~ 115 (256)
.+++|||+||++|+.++.++..+. ++++|+.+|++++..+.|+++++..|+.. +++.+|+.+.++... .++
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~---~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALP---EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTST---TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred CCceEEEeccccccHHHHHHHhhc---ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 679999999999999999998753 36799999999999999999999998864 899999998776532 257
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+|+.+-. ...+..+++.+.++|+|||.+++
T Consensus 122 fD~VFiDa~------------------------K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 122 FDFVFIDAD------------------------KRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEEEEEEST------------------------GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEEccc------------------------ccchhhHHHHHhhhccCCeEEEE
Confidence 999999632 11267788888999999999998
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-12 Score=103.09 Aligned_cols=122 Identities=18% Similarity=0.218 Sum_probs=97.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCC-CccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAG-LVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~-~fD~Ii 120 (256)
...+||||||.|.+++.+|+. .|+..++|+|+....+..|.+.+.+.++ +..+++.|+...+..+.+. +.|-|.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~----nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK----NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH----CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 368999999999999998888 9999999999999999999999999999 6699999999988776555 999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.|.| .| |++.++. +..-+...+++.+.+.|+|||.+.+.+......++
T Consensus 125 i~FP---DP-------WpKkRH~---KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 125 INFP---DP-------WPKKRHH---KRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred EECC---CC-------CCCcccc---ccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 9765 11 1222111 11224678999999999999999997754443344
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=97.64 Aligned_cols=161 Identities=20% Similarity=0.235 Sum_probs=102.4
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+.+..++.+. ++..+..-|||||||+|..+-.+ . .++...+|+|||+.|++.|.+.- +..+++.+|+.
T Consensus 35 em~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL----~--~~Gh~wiGvDiSpsML~~a~~~e----~egdlil~DMG 103 (270)
T KOG1541|consen 35 EMAERALELLA-LPGPKSGLILDIGCGSGLSGSVL----S--DSGHQWIGVDISPSMLEQAVERE----LEGDLILCDMG 103 (270)
T ss_pred HHHHHHHHHhh-CCCCCCcEEEEeccCCCcchhee----c--cCCceEEeecCCHHHHHHHHHhh----hhcCeeeeecC
Confidence 34455555543 33346789999999999975333 2 24678999999999999998632 12479999998
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHHH
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQIC 183 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~ 183 (256)
+.+ ++.+++||-+|+--.....-+.....+.+. ..+..|+..++.+|++|++.++-....+ +.+.+.
T Consensus 104 ~Gl-pfrpGtFDg~ISISAvQWLcnA~~s~~~P~----------~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~ 172 (270)
T KOG1541|consen 104 EGL-PFRPGTFDGVISISAVQWLCNADKSLHVPK----------KRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIM 172 (270)
T ss_pred CCC-CCCCCccceEEEeeeeeeecccCccccChH----------HHHHHHhhhhhhhhccCceeEEEecccchHHHHHHH
Confidence 665 556899999988433222222222222222 2367889999999999999998544332 233455
Q ss_pred HHHHHcCCc--EEEEEecCCCCccEEE
Q 025207 184 LQMMEKGYA--ARIVVQRSTEEENLHI 208 (256)
Q Consensus 184 ~~~~~~g~~--~~~~~~~~~~~~~~~l 208 (256)
......||. +.+-++...+...+++
T Consensus 173 ~~a~~aGF~GGlvVd~Pes~k~kK~yL 199 (270)
T KOG1541|consen 173 QQAMKAGFGGGLVVDWPESTKNKKYYL 199 (270)
T ss_pred HHHHhhccCCceeeecccccccceeEE
Confidence 555666764 3444444444434333
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-11 Score=107.19 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=106.9
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.|.....+.+++..++.. ..+++.+|||+|+|.|.-+..++..+.. ...|++.|+++..++.+++|+.+.|
T Consensus 90 ~G~~yvQd~sS~l~~~~L~~----~~~pg~~VLD~CAAPGgKTt~la~~l~~---~g~lvA~D~~~~R~~~L~~nl~r~G 162 (470)
T PRK11933 90 SGLFYIQEASSMLPVAALFA----DDNAPQRVLDMAAAPGSKTTQIAALMNN---QGAIVANEYSASRVKVLHANISRCG 162 (470)
T ss_pred CCcEEEECHHHHHHHHHhcc----CCCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 34454544455555444421 1258899999999999999999998752 3489999999999999999999999
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCC----CCcHHHHHHHHHHHhhccccCeEE
Q 025207 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGG----ENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
+.+ .+.+.|...... ...+.||.|++++|-.-..- .++.+...+.-. ..-......+|..+.++|||||++
T Consensus 163 ~~nv~v~~~D~~~~~~-~~~~~fD~ILvDaPCSG~G~---~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~L 238 (470)
T PRK11933 163 VSNVALTHFDGRVFGA-ALPETFDAILLDAPCSGEGT---VRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTL 238 (470)
T ss_pred CCeEEEEeCchhhhhh-hchhhcCeEEEcCCCCCCcc---cccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 876 777788765432 23467999999999653222 222222222110 001124567889999999999999
Q ss_pred EEEEeCCCC
Q 025207 170 YLVTLTAND 178 (256)
Q Consensus 170 ~~~~~~~~~ 178 (256)
+.++++...
T Consensus 239 VYSTCT~~~ 247 (470)
T PRK11933 239 VYSTCTLNR 247 (470)
T ss_pred EEECCCCCH
Confidence 999998663
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-10 Score=99.81 Aligned_cols=136 Identities=14% Similarity=0.173 Sum_probs=91.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-----HcCC---cceEEEcchhhchhhhc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-----AHNV---HADLINTDIASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-----~~~~---~~~~~~~d~~~~~~~~~ 112 (256)
..+++||++|||+|..+..+.+. .+..+|+++|+++++++.|++... .... ..+++.+|+.+.+.. .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~----~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY----ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-P 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc----CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-c
Confidence 46789999999999976555543 344689999999999999996321 1112 238899999987654 3
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH----HHHHHHHHH
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP----SQICLQMME 188 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~ 188 (256)
+++||+|+++.|-...... .......+++.+.+.|+|||+++....+.... ..+.+.+++
T Consensus 224 ~~~YDVIIvDl~DP~~~~~----------------~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~ 287 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELL----------------STLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEH 287 (374)
T ss_pred CCCccEEEEcCCCccccch----------------hhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHH
Confidence 5689999999753111000 01123678999999999999988754322222 234666777
Q ss_pred cCCcEEEEE
Q 025207 189 KGYAARIVV 197 (256)
Q Consensus 189 ~g~~~~~~~ 197 (256)
.++......
T Consensus 288 af~~v~~y~ 296 (374)
T PRK01581 288 AGLTVKSYH 296 (374)
T ss_pred hCCceEEEE
Confidence 777665444
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=97.12 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=93.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..-.++||+|||.|.++..++..+. .++++|+++.+++.|+++.... -..++++.|+.+..+ +++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd------~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P---~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCD------RLLAVDISPRALARARERLAGL-PHVEWIQADVPEFWP---EGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEE------EEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT------SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHhhC------ceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCCCC---CCCeeEEE
Confidence 4558999999999999988877743 7999999999999999987632 134899999977654 48999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------CCHHHHHHHHHHcCC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------NDPSQICLQMMEKGY 191 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~~~~~g~ 191 (256)
+.=.++...+ .+.+..++..+...|+|||.+++-+... -..+.+...+.+.-.
T Consensus 112 ~SEVlYYL~~------------------~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~ 173 (201)
T PF05401_consen 112 LSEVLYYLDD------------------AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT 173 (201)
T ss_dssp EES-GGGSSS------------------HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred EehHhHcCCC------------------HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh
Confidence 8432222211 2336788999999999999999966321 123456666666533
Q ss_pred cEEEEE-ecCCCCccEEEEEEEe
Q 025207 192 AARIVV-QRSTEEENLHIIKFWR 213 (256)
Q Consensus 192 ~~~~~~-~~~~~~~~~~l~~~~~ 213 (256)
++..+. ......+...+..+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
T PF05401_consen 174 EVERVECRGGSPNEDCLLARFRN 196 (201)
T ss_dssp EEEEEEEE-SSTTSEEEEEEEE-
T ss_pred heeEEEEcCCCCCCceEeeeecC
Confidence 443333 3444556666666655
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=97.17 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=75.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||.|.++..+... .++..+|+|++++.+..|.++ |+ .++++|+.+.+..+.+++||.||
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-----k~v~g~GvEid~~~v~~cv~r----Gv--~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-----KQVDGYGVEIDPDNVAACVAR----GV--SVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-----cCCeEEEEecCHHHHHHHHHc----CC--CEEECCHHHhHhhCCCCCccEEe
Confidence 47899999999999975444432 478999999999998887654 33 79999999999888899999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++-. .+....--.-+.++|+-|...+++.|++.
T Consensus 81 lsqt------------------------LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg 113 (193)
T PF07021_consen 81 LSQT------------------------LQAVRRPDEVLEEMLRVGRRAIVSFPNFG 113 (193)
T ss_pred hHhH------------------------HHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence 9521 11112222234455777888888777665
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=112.12 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=68.9
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
.+++++.+. .+.+++++++.+.. .+.+|||+.||+|.+++.+|... .+|+|+|+++.+++.|++|+..|
T Consensus 172 ~sFfQvN~~~~~~l~~~~~~~l~~----~~~~vlDlycG~G~fsl~la~~~------~~V~gvE~~~~av~~A~~Na~~N 241 (352)
T PF05958_consen 172 GSFFQVNPEQNEKLYEQALEWLDL----SKGDVLDLYCGVGTFSLPLAKKA------KKVIGVEIVEEAVEDARENAKLN 241 (352)
T ss_dssp TS---SBHHHHHHHHHHHHHHCTT-----TTEEEEES-TTTCCHHHHHCCS------SEEEEEES-HHHHHHHHHHHHHT
T ss_pred CcCccCcHHHHHHHHHHHHHHhhc----CCCcEEEEeecCCHHHHHHHhhC------CeEEEeeCCHHHHHHHHHHHHHc
Confidence 567788877 88888888887642 23389999999999999988762 38999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhh--------------cCCCccEEEECCC
Q 025207 94 NVHA-DLINTDIASGLEKR--------------LAGLVDVMVVNPP 124 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~--------------~~~~fD~Ii~npP 124 (256)
++++ +++.++..+..... ....+|+|+.+||
T Consensus 242 ~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 242 GIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp T--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred CCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 9987 88887765542211 1236899999999
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=105.22 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.+...+++.+. .+++.+|||+|||+|.++..+++... ....|+++|+++++++.|++++..++.+. .++.+|+
T Consensus 67 ~l~a~ll~~L~---i~~g~~VLDIG~GtG~~a~~LA~~~~---~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~ 140 (322)
T PRK13943 67 SLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVG---EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG 140 (322)
T ss_pred HHHHHHHHhcC---CCCCCEEEEEeCCccHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh
Confidence 34444444432 24678999999999999988888642 23479999999999999999999888764 7888897
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.... .++||+|+++.. ...+...+.+.|+|||++++..
T Consensus 141 ~~~~~~--~~~fD~Ii~~~g---------------------------~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 141 YYGVPE--FAPYDVIFVTVG---------------------------VDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hhcccc--cCCccEEEECCc---------------------------hHHhHHHHHHhcCCCCEEEEEe
Confidence 765433 357999999532 2233455677899999988854
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=106.29 Aligned_cols=136 Identities=21% Similarity=0.233 Sum_probs=101.0
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC----------------------------Cc
Q 025207 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP----------------------------GV 71 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~----------------------------~~ 71 (256)
|.+.-+.|+..|+..-. + .++..++|+-||+|+++|++|.+....-| .+
T Consensus 172 ~ApLketLAaAil~lag-w--~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a 248 (381)
T COG0116 172 PAPLKETLAAAILLLAG-W--KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERA 248 (381)
T ss_pred CCCchHHHHHHHHHHcC-C--CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHH
Confidence 34446777777766432 3 35579999999999999999987532222 11
Q ss_pred -------eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhh
Q 025207 72 -------QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAW 142 (256)
Q Consensus 72 -------~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~ 142 (256)
.++|+|+++.+++.|+.|....|+.. .|.++|+.....++ +.+|+|||||||...-..+.
T Consensus 249 ~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~--------- 317 (381)
T COG0116 249 RRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEA--------- 317 (381)
T ss_pred hhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChh---------
Confidence 37799999999999999999999875 99999998876553 78999999999974332210
Q ss_pred cCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 143 AGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
--...+..+.+.+.+.++-.+..++++
T Consensus 318 ----~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 318 ----LVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred ----hHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 001246677788888899889988865
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-12 Score=102.51 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=75.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----------------cceEEEcch
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----------------HADLINTDI 104 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----------------~~~~~~~d~ 104 (256)
.++.+|||+|||.|..++.++.. +++|+|+|+++.+++.+.. ++++ ..++.++|+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcc
Confidence 35689999999999999888875 6799999999999998642 2221 236788898
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.... ..+.||+|+.---+.+.+. .....++..+.++|+|||++++++
T Consensus 107 ~~l~~~-~~~~fd~v~D~~~~~~l~~-------------------~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 107 FALTAA-DLADVDAVYDRAALIALPE-------------------EMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred cCCCcc-cCCCeeEEEehHhHhhCCH-------------------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence 876432 2257899986433332222 236788999999999999755533
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.6e-11 Score=99.87 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=81.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||++|||+|.++..+++. .+..+++++|+++++++.+++++...+ . ..+++.+|....+.. .+++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~----~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~-~~~~ 145 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKH----KSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD-TENT 145 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhC----CCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh-CCCC
Confidence 45679999999999987666554 334589999999999999999875432 1 227788888776543 2578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
||+|+++++....+.. ......+++.+.+.|+|||++++...
T Consensus 146 yDvIi~D~~~~~~~~~-----------------~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAE-----------------TLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred ccEEEEeCCCCCCccc-----------------chhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 9999998764321110 01246788999999999999998644
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-11 Score=94.95 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=83.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch------hhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL------EKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~------~~~~~~ 114 (256)
.++.+|||+|||+|.++..++.... +.++|+++|+++.+ ... ...++++|+.+.. .....+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~---~~~~v~~vDis~~~--------~~~--~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVG---GKGRVIAVDLQPMK--------PIE--NVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhC---CCceEEEEeccccc--------cCC--CceEEEeeCCChhHHHHHHHHhCCC
Confidence 5789999999999999887777632 34589999999864 111 2367777875531 112346
Q ss_pred CccEEEECCC--CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025207 115 LVDVMVVNPP--YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 115 ~fD~Ii~npP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
+||+|+++++ +....... ..........++..+.++|+|||++++.........++...++.. |.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~------------~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~ 164 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDID------------HLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FE 164 (188)
T ss_pred CccEEEcCCCCCCCCCcccc------------HHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hc
Confidence 7999999753 21100000 000012246789999999999999999665555555666666554 44
Q ss_pred EEEE
Q 025207 193 ARIV 196 (256)
Q Consensus 193 ~~~~ 196 (256)
...+
T Consensus 165 ~~~~ 168 (188)
T TIGR00438 165 KVKV 168 (188)
T ss_pred eEEE
Confidence 3333
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.9e-11 Score=100.34 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=81.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CC---cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NV---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||++|||.|..+.++++. .+-.+|+.+|+++.+++.|++.+... ++ ..+++.+|+...+....+++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~----~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH----SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC----CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 46799999999999987776653 22358999999999999999987653 22 23899999887765433568
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
||+|+++.+-...+. .......+++.+.+.|+|||+++.-
T Consensus 166 yDvIi~D~~dp~~~~-----------------~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 166 YDAIIVDSSDPVGPA-----------------QELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCEEEEcCCCCCCch-----------------hhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 999999753211110 0112467899999999999999763
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-12 Score=102.12 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=93.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++-+++||+|||||..+..+-.+. .+++|+|||++|+++|.+. ++-..+.+.++..+.....+.+||+|+
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eK----g~YD~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEK----GLYDTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhc----cchHHHHHHHHHHHhhhccCCcccchh
Confidence 346899999999999888777663 3799999999999998764 333366667776666545568999998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQICLQ 185 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~ 185 (256)
+--.+... -.++.++-....+|+|||.+.|+..... ....++..
T Consensus 194 AaDVl~Yl---------------------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~ 252 (287)
T COG4976 194 AADVLPYL---------------------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRAL 252 (287)
T ss_pred hhhHHHhh---------------------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHH
Confidence 84321111 1267778888999999999999764321 23578888
Q ss_pred HHHcCCcEEEEEe
Q 025207 186 MMEKGYAARIVVQ 198 (256)
Q Consensus 186 ~~~~g~~~~~~~~ 198 (256)
+...|++++.+..
T Consensus 253 l~~~Gl~~i~~~~ 265 (287)
T COG4976 253 LAASGLEVIAIED 265 (287)
T ss_pred HHhcCceEEEeec
Confidence 8999998876654
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-11 Score=105.63 Aligned_cols=126 Identities=23% Similarity=0.232 Sum_probs=95.8
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
+-+|.|... .+.+...+.+.+.. ..++.+|||++||+|.+++.++... +...|+++|+++.+++.+++|++.|
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~--~~~~~~vLDl~aGsG~~~l~~a~~~----~~~~V~a~Din~~Av~~a~~N~~~N 104 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGP--KLPRESVLDALSASGIRGIRYALET----GVEKVTLNDINPDAVELIKKNLELN 104 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHh--hcCCCEEEECCCcccHHHHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 457888776 55555555555421 1134789999999999999988763 2347999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 94 NVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+++. .+.++|+...+.. ...||+|++||| .. ...++..+...+++||+++++
T Consensus 105 ~~~~~~v~~~Da~~~l~~--~~~fD~V~lDP~-Gs------------------------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 105 GLENEKVFNKDANALLHE--ERKFDVVDIDPF-GS------------------------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCceEEEhhhHHHHHhh--cCCCCEEEECCC-CC------------------------cHHHHHHHHHHhcCCCEEEEE
Confidence 9875 6999998776542 357999999986 21 235677766778999999996
Q ss_pred E
Q 025207 173 T 173 (256)
Q Consensus 173 ~ 173 (256)
.
T Consensus 158 A 158 (382)
T PRK04338 158 A 158 (382)
T ss_pred e
Confidence 4
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=91.70 Aligned_cols=108 Identities=22% Similarity=0.363 Sum_probs=80.1
Q ss_pred ccCCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 13 SHPEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 13 ~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
+.=+.|.-+++ +..++..|-+-.. .-++++++|+|||+|.+.+..+.. ..-.|.|+||+|++++.+.+|..
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~Tyg---diEgkkl~DLgcgcGmLs~a~sm~-----~~e~vlGfDIdpeALEIf~rNae 92 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYG---DIEGKKLKDLGCGCGMLSIAFSMP-----KNESVLGFDIDPEALEIFTRNAE 92 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhc---cccCcchhhhcCchhhhHHHhhcC-----CCceEEeeecCHHHHHHHhhchH
Confidence 33345555544 3334444433332 248999999999999988665543 23479999999999999999999
Q ss_pred HcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCC
Q 025207 92 AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 92 ~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~ 130 (256)
+..++.++.+.|+.+.... .+.||..+.||||.....
T Consensus 93 EfEvqidlLqcdildle~~--~g~fDtaviNppFGTk~~ 129 (185)
T KOG3420|consen 93 EFEVQIDLLQCDILDLELK--GGIFDTAVINPPFGTKKK 129 (185)
T ss_pred Hhhhhhheeeeeccchhcc--CCeEeeEEecCCCCcccc
Confidence 9888889999999887544 488999999999975443
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.6e-11 Score=97.89 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=86.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-----CC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-----~~ 114 (256)
+.++|||+|+++|.-++.++..+. ++++++++|.+++..+.|++++...|+.. +++.+++.+.++... .+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~---~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP---EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 678999999999999999988753 46799999999999999999999998754 899999988876642 26
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+.+-- ...+..+++.+.++|++||.+++
T Consensus 156 ~fD~iFiDad------------------------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 156 TFDFIFVDAD------------------------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cccEEEecCC------------------------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 8999998521 22367888888999999999886
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-10 Score=98.47 Aligned_cols=166 Identities=19% Similarity=0.188 Sum_probs=115.8
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 13 SHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
+..+.+.+...+..++..+++- +++.+|||+|++.|.-|..+++.+.. .+..|+++|+++.-++..++|+++
T Consensus 133 ~~~G~~~vQd~sS~l~a~~L~p------~pge~VlD~cAAPGGKTthla~~~~~--~~~iV~A~D~~~~Rl~~l~~nl~R 204 (355)
T COG0144 133 FAEGLIYVQDEASQLPALVLDP------KPGERVLDLCAAPGGKTTHLAELMEN--EGAIVVAVDVSPKRLKRLRENLKR 204 (355)
T ss_pred hhceEEEEcCHHHHHHHHHcCC------CCcCEEEEECCCCCCHHHHHHHhcCC--CCceEEEEcCCHHHHHHHHHHHHH
Confidence 3455666666566666655443 68999999999999999999998752 345679999999999999999999
Q ss_pred cCCcc-eEEEcchhhchhhhcC-CCccEEEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhccccC
Q 025207 93 HNVHA-DLINTDIASGLEKRLA-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 93 ~~~~~-~~~~~d~~~~~~~~~~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~Lkpg 166 (256)
.|+.+ .+++.|.......... ++||.|++++|-.-.. .-++.++..|.-... -......+|....++||||
T Consensus 205 lG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G---~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 205 LGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTG---VIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred cCCCceEEEecccccccccccccCcCcEEEECCCCCCCc---ccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99987 7777776544332222 3599999999975432 223333333322111 1225678899999999999
Q ss_pred eEEEEEEeCCCCH--HH-HHHHHHHc
Q 025207 167 GWLYLVTLTANDP--SQ-ICLQMMEK 189 (256)
Q Consensus 167 G~l~~~~~~~~~~--~~-~~~~~~~~ 189 (256)
|++++++++.... ++ +...+.+.
T Consensus 282 G~LVYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 282 GVLVYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred CEEEEEccCCchhcCHHHHHHHHHhC
Confidence 9999999876532 23 44444443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=85.50 Aligned_cols=102 Identities=27% Similarity=0.448 Sum_probs=77.9
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEEEECC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
+|+|+|||+|.++..++. .+..+++++|+++.+++.+++........ .++...|+.+... ...++||+|++++
T Consensus 1 ~ildig~G~G~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-----GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcc
Confidence 489999999998766655 23569999999999999888644433333 3888888887653 2347899999999
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
++... ......+++.+.+.|++||.+++.
T Consensus 75 ~~~~~--------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL--------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh--------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 87542 123678899999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=93.86 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=118.4
Q ss_pred ccCCchHHHHHHHHHhhcccccCC--CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025207 19 EPCDDSFALVDALLADRINLVEHH--PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~--~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
.++...+++..++++.+...+..+ +++++|||+|.|..++.+|.. +|+.+|+-+|....-+...+....+.+++
T Consensus 42 ~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~----~p~~~vtLles~~Kk~~FL~~~~~eL~L~ 117 (215)
T COG0357 42 AIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIA----FPDLKVTLLESLGKKIAFLREVKKELGLE 117 (215)
T ss_pred CCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHh----ccCCcEEEEccCchHHHHHHHHHHHhCCC
Confidence 455567888888888876554434 699999999999999999976 78889999999999999999999999998
Q ss_pred c-eEEEcchhhchhhhcCCC-ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE--
Q 025207 97 A-DLINTDIASGLEKRLAGL-VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV-- 172 (256)
Q Consensus 97 ~-~~~~~d~~~~~~~~~~~~-fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-- 172 (256)
+ +++++++.+.... .. ||+|++ ++...+..+.+-+..++|+||.+++.
T Consensus 118 nv~i~~~RaE~~~~~---~~~~D~vts-------------------------RAva~L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 118 NVEIVHGRAEEFGQE---KKQYDVVTS-------------------------RAVASLNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred CeEEehhhHhhcccc---cccCcEEEe-------------------------ehccchHHHHHHHHHhcccCCcchhhhH
Confidence 6 9999999888543 23 999998 22334778899999999999987532
Q ss_pred EeCCCCHHHHHHHHHHcCCcEEEEEecCCC
Q 025207 173 TLTANDPSQICLQMMEKGYAARIVVQRSTE 202 (256)
Q Consensus 173 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 202 (256)
........+....+...++....+.....+
T Consensus 170 ~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p 199 (215)
T COG0357 170 LAGKDELPEAEKAILPLGGQVEKVFSLTVP 199 (215)
T ss_pred HhhhhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence 223444566777777778877766655443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=93.94 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=58.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..++.. .+..++|+|+++++++.++++ + .+++.+|+.+...++.+++||+|++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~i~~a~~~----~--~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-----KQVRGYGIEIDQDGVLACVAR----G--VNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-----cCCcEEEEeCCHHHHHHHHHc----C--CeEEEEEhhhcccccCCCCcCEEEE
Confidence 5689999999999987666543 245789999999999887642 2 3678888866433344578999999
Q ss_pred CCCCCCCCC
Q 025207 122 NPPYVPTPE 130 (256)
Q Consensus 122 npP~~~~~~ 130 (256)
+.++.+..+
T Consensus 82 ~~~l~~~~d 90 (194)
T TIGR02081 82 SQTLQATRN 90 (194)
T ss_pred hhHhHcCcC
Confidence 987765443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-10 Score=95.07 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=92.9
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc--chhh
Q 025207 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT--DIAS 106 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~--d~~~ 106 (256)
+.+.+.+. +-.+++|||||||+|..+..++.. ++. .|+|+|.++..+-..+-.-...+.+..+... .+.+
T Consensus 105 ~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~----GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~ 176 (315)
T PF08003_consen 105 DRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR----GAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED 176 (315)
T ss_pred HHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc----CCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh
Confidence 44444443 358899999999999998776665 433 7999999988765433322223333323332 2333
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe------------
Q 025207 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL------------ 174 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------ 174 (256)
. +. .+.||+|+|--.++|..+ ....|.++.+.|++||.+++-+-
T Consensus 177 L-p~--~~~FDtVF~MGVLYHrr~---------------------Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P 232 (315)
T PF08003_consen 177 L-PN--LGAFDTVFSMGVLYHRRS---------------------PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVP 232 (315)
T ss_pred c-cc--cCCcCEEEEeeehhccCC---------------------HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEcc
Confidence 2 22 478999999777776554 35778999999999999997441
Q ss_pred CCC-----------CHHHHHHHHHHcCCcEEEEEe
Q 025207 175 TAN-----------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 175 ~~~-----------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
..+ ....+..++++.||+...+..
T Consensus 233 ~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 233 EDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred CCcccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence 111 346889999999998766553
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-11 Score=107.53 Aligned_cols=131 Identities=20% Similarity=0.248 Sum_probs=91.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---c--CC---cceEEEcchhhchhhhc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---H--NV---HADLINTDIASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~--~~---~~~~~~~d~~~~~~~~~ 112 (256)
+++++|||+|||+|..+.++++. .+..+++++|+++++++.++++... + .. ..+++.+|..+.... .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~----~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY----PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-L 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC----CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-C
Confidence 46789999999999987666653 2226999999999999999985321 1 12 237899999887644 3
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----CHHHHHHHHHH
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----DPSQICLQMME 188 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~~~~ 188 (256)
+++||+|++|+|....+... ......+++.+.+.|+|||++++...+.. ...++.+.+++
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~----------------~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~ 434 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALG----------------KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA 434 (521)
T ss_pred CCCCCEEEEeCCCCCCcchh----------------ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 47899999998753211110 01135788999999999999988543211 22356777788
Q ss_pred cCCc
Q 025207 189 KGYA 192 (256)
Q Consensus 189 ~g~~ 192 (256)
.||.
T Consensus 435 ~gf~ 438 (521)
T PRK03612 435 AGLA 438 (521)
T ss_pred cCCE
Confidence 8883
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=97.44 Aligned_cols=131 Identities=13% Similarity=0.214 Sum_probs=103.1
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhcCCC
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~ 115 (256)
.+.+.+|||.|.|-|..++++++. ++ .|+.+|.+|..++.|.-|--..++. .+++.+|+.+....+.+++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 357899999999999999888775 45 8999999999999987664333322 2899999999999988999
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------CCHHHHHHHHHH
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-------NDPSQICLQMME 188 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~~~~ 188 (256)
||+||-+||=+.... .-....+-++++++|||||+++=..... +....+.+.+.+
T Consensus 206 fDaIiHDPPRfS~Ag------------------eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 206 FDAIIHDPPRFSLAG------------------ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR 267 (287)
T ss_pred cceEeeCCCccchhh------------------hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence 999999999654332 1235678899999999999988644322 345688899999
Q ss_pred cCCcEE
Q 025207 189 KGYAAR 194 (256)
Q Consensus 189 ~g~~~~ 194 (256)
.||...
T Consensus 268 vGF~~v 273 (287)
T COG2521 268 VGFEVV 273 (287)
T ss_pred cCceee
Confidence 999843
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-10 Score=96.33 Aligned_cols=144 Identities=20% Similarity=0.227 Sum_probs=108.1
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+++..-.|.|+.-++. ..+++.. .+|.+|+|+.+|.|.+++.+|+. . ...|+++|+||.+++.+++|+
T Consensus 164 vD~~Kv~Fsprl~~ER--~Rva~~v-----~~GE~V~DmFAGVGpfsi~~Ak~----g-~~~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 164 VDVAKVYFSPRLSTER--ARVAELV-----KEGETVLDMFAGVGPFSIPIAKK----G-RPKVYAIDINPDAVEYLKENI 231 (341)
T ss_pred EchHHeEECCCchHHH--HHHHhhh-----cCCCEEEEccCCcccchhhhhhc----C-CceEEEEecCHHHHHHHHHHH
Confidence 5556667777655443 3444443 46999999999999999999986 2 234999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..|++.. ..+++|..+..... +.+|-|+.+.|.. ...++....+.+++||+
T Consensus 232 ~LN~v~~~v~~i~gD~rev~~~~--~~aDrIim~~p~~-------------------------a~~fl~~A~~~~k~~g~ 284 (341)
T COG2520 232 RLNKVEGRVEPILGDAREVAPEL--GVADRIIMGLPKS-------------------------AHEFLPLALELLKDGGI 284 (341)
T ss_pred HhcCccceeeEEeccHHHhhhcc--ccCCEEEeCCCCc-------------------------chhhHHHHHHHhhcCcE
Confidence 9999876 79999999986553 7899999988752 35678888889999999
Q ss_pred EEEEEeCCCCH------HHHHHHHHHcCCcE
Q 025207 169 LYLVTLTANDP------SQICLQMMEKGYAA 193 (256)
Q Consensus 169 l~~~~~~~~~~------~~~~~~~~~~g~~~ 193 (256)
+.+-....... ..+.......|++.
T Consensus 285 iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 285 IHYYEFVPEDDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred EEEEeccchhhcccchHHHHHHHHhhccCcc
Confidence 98855433322 34555555555543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=90.50 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=81.7
Q ss_pred CCchHHHHHHHHHhhc---ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C
Q 025207 21 CDDSFALVDALLADRI---NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V 95 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~---~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~ 95 (256)
++-+..+++++..... ......+++|||+|||+|..++.++.. .+..+|+.+|.++ .++.++.|++.|+ .
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~----~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~ 95 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL----FGAARVVLTDYNE-VLELLRRNIELNGSLL 95 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-----T-SEEEEEE-S--HHHHHHHHHHTT----
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc----cCCceEEEeccch-hhHHHHHHHHhccccc
Confidence 3347777787777421 111357899999999999999998887 3456999999999 9999999999987 2
Q ss_pred c--ceEEEcchhhch-hh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 96 H--ADLINTDIASGL-EK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 96 ~--~~~~~~d~~~~~-~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
. ..+...|+.+.. .. ....+||+|++.-..+.. .....++..+.++|+++|.+++
T Consensus 96 ~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---------------------~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 96 DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---------------------ELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp ----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---------------------GGHHHHHHHHHHHBTT-TTEEE
T ss_pred cccccCcEEEecCcccccccccccCCEEEEecccchH---------------------HHHHHHHHHHHHHhCCCCEEEE
Confidence 2 266666765533 12 234689999984333311 1267889999999999999777
Q ss_pred EEeCC
Q 025207 172 VTLTA 176 (256)
Q Consensus 172 ~~~~~ 176 (256)
.....
T Consensus 155 ~~~~R 159 (173)
T PF10294_consen 155 AYKRR 159 (173)
T ss_dssp EEE-S
T ss_pred EeCEe
Confidence 65533
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-10 Score=89.21 Aligned_cols=143 Identities=18% Similarity=0.202 Sum_probs=101.1
Q ss_pred CCchHHHHHHHHHhhcccc--cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-
Q 025207 21 CDDSFALVDALLADRINLV--EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA- 97 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~--~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~- 97 (256)
++..+++..++++.+..++ +..+.+++|+|+|.|..++.++.. .|+.+++.+|.+..-+...+.-+...++++
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~----~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv 100 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIA----RPDLQVTLVESVGKKVAFLKEVVRELGLSNV 100 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-----TTSEEEEEESSHHHHHHHHHHHHHHT-SSE
T ss_pred CCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHh----CCCCcEEEEeCCchHHHHHHHHHHHhCCCCE
Confidence 3335666667877775433 223338999999999999999998 788999999999999999999999999986
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++++++.+ .....+||+|++- +...+..+++.+..+|++||++++.- +..
T Consensus 101 ~v~~~R~E~---~~~~~~fd~v~aR-------------------------Av~~l~~l~~~~~~~l~~~G~~l~~K-G~~ 151 (184)
T PF02527_consen 101 EVINGRAEE---PEYRESFDVVTAR-------------------------AVAPLDKLLELARPLLKPGGRLLAYK-GPD 151 (184)
T ss_dssp EEEES-HHH---TTTTT-EEEEEEE-------------------------SSSSHHHHHHHHGGGEEEEEEEEEEE-SS-
T ss_pred EEEEeeecc---cccCCCccEEEee-------------------------hhcCHHHHHHHHHHhcCCCCEEEEEc-CCC
Confidence 999999988 2235789999992 11226788999999999999999853 344
Q ss_pred CHHHHH---HHHHHcCCcEEEE
Q 025207 178 DPSQIC---LQMMEKGYAARIV 196 (256)
Q Consensus 178 ~~~~~~---~~~~~~g~~~~~~ 196 (256)
..+++. ..+...+++...+
T Consensus 152 ~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 152 AEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp -HHHHHTHHHHHHCCCEEEEEE
T ss_pred hHHHHHHHHhHHHHhCCEEeee
Confidence 444443 3333344444333
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=106.04 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=102.8
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
...+..+||||||.|.+++.+|.. +|+..++|+|+....+..+.+.+...++.+ .++..|+......+.++++|.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~----~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKM----NPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccE
Confidence 356789999999999999999888 899999999999999999888888888876 777777655444455688999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC-Cc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG-YA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g-~~ 192 (256)
|+.|.| .|.+ +.++.+.++ +...++..+.++|+|||.+.+.+.......+....+.+.+ |+
T Consensus 421 i~i~FP---DPWp--Kkrh~krRl--------~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~ 482 (506)
T PRK01544 421 IYILFP---DPWI--KNKQKKKRI--------FNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFE 482 (506)
T ss_pred EEEECC---CCCC--CCCCccccc--------cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeE
Confidence 999765 1111 111222222 3578899999999999999998766665666666766654 44
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=96.15 Aligned_cols=121 Identities=22% Similarity=0.318 Sum_probs=86.7
Q ss_pred HHHHhhccccc---CCCCEEEEecccccHHHHHHHHHhcccCCC--ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 30 ALLADRINLVE---HHPVLCMEVGCGSGYVITSLALMLGQEVPG--VQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 30 ~l~~~~~~~~~---~~~~~VLDlGcG~G~~~~~la~~l~~~~~~--~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
|++.+++.+.+ +...+|||+|||.|.....+.+. .++ ..++++|.+|.+++..+++...+.........|+
T Consensus 56 wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~----~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dl 131 (264)
T KOG2361|consen 56 WLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKT----SPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDL 131 (264)
T ss_pred HHHHhhHHhhCccccChhhheeeccCCCcccchhhhc----CCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceec
Confidence 55555555432 33348999999999987777665 444 8999999999999999988765543334445555
Q ss_pred hhch--hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 105 ASGL--EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~--~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.... .+...+++|+|++-..+...+.. -+...++.+.++|||||.+++-.
T Consensus 132 t~~~~~~~~~~~svD~it~IFvLSAi~pe-------------------k~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVLSAIHPE-------------------KMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred cchhccCCCCcCccceEEEEEEEeccChH-------------------HHHHHHHHHHHHhCCCcEEEEee
Confidence 4432 23456899999886555443332 26889999999999999999854
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=105.87 Aligned_cols=168 Identities=18% Similarity=0.169 Sum_probs=113.4
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
..+|+|+..++++++.+.. .+..+|+|+.||+|.+.+.....+++..-...++|.|+++.....|+.|+-.++
T Consensus 166 GEfyTP~~v~~liv~~l~~-------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg 238 (489)
T COG0286 166 GEFYTPREVSELIVELLDP-------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG 238 (489)
T ss_pred CccCChHHHHHHHHHHcCC-------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence 5789998877777776655 245699999999999999999888653313689999999999999999999998
Q ss_pred Ccc--eEEEcchhhchhh---hcCCCccEEEECCCCCCCCCcccc-cccc-h-hhhcCCCC-cHHHHHHHHHHHhhcccc
Q 025207 95 VHA--DLINTDIASGLEK---RLAGLVDVMVVNPPYVPTPEDEVG-REGI-A-SAWAGGEN-GRAVIDKILPSADKLLSK 165 (256)
Q Consensus 95 ~~~--~~~~~d~~~~~~~---~~~~~fD~Ii~npP~~~~~~~~~~-~~~~-~-~~~~~~~~-~~~~~~~~l~~~~~~Lkp 165 (256)
++. ....+|-...... ...+.||.|++||||......... .... . ....+... .......+++.+...|+|
T Consensus 239 i~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 239 IEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred CCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 873 5555554333211 134679999999999743333221 1111 1 11112111 111226778889999999
Q ss_pred CeEEEEEEeCCC-----CHHHHHHHHHHc
Q 025207 166 RGWLYLVTLTAN-----DPSQICLQMMEK 189 (256)
Q Consensus 166 gG~l~~~~~~~~-----~~~~~~~~~~~~ 189 (256)
||++.++.+... ....+++.+...
T Consensus 319 ~g~aaivl~~gvlfr~~~e~~IR~~l~~~ 347 (489)
T COG0286 319 GGRAAIVLPDGVLFRGGAEKDIRKDLLED 347 (489)
T ss_pred CceEEEEecCCcCcCCCchHHHHHHHHhc
Confidence 998887766432 245677777663
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=97.53 Aligned_cols=91 Identities=22% Similarity=0.331 Sum_probs=71.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-c-ceEEEcc
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-H-ADLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~-~~~~~~d 103 (256)
.+++.+.+... ..++.+|||+|||+|.++..++.. ..+++|+|+++.+++.+++++...+. . .+++++|
T Consensus 23 ~i~~~Iv~~~~---~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D 93 (294)
T PTZ00338 23 LVLDKIVEKAA---IKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD 93 (294)
T ss_pred HHHHHHHHhcC---CCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 34455555442 247789999999999999888775 34799999999999999999887653 2 3899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCC
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
+.+... ..||.|++|+||+...
T Consensus 94 al~~~~----~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 94 ALKTEF----PYFDVCVANVPYQISS 115 (294)
T ss_pred Hhhhcc----cccCEEEecCCcccCc
Confidence 977532 4689999999998654
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=96.45 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+.+.+. ..++.+|||+|||+|.++..+++. ..+++|+|+++.+++.+++++... -+.+++++|+
T Consensus 15 ~~~~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~~~~~~-~~v~ii~~D~ 84 (258)
T PRK14896 15 DRVVDRIVEYAE---DTDGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRDDEIAA-GNVEIIEGDA 84 (258)
T ss_pred HHHHHHHHHhcC---CCCcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHhccC-CCEEEEEecc
Confidence 344455555442 246799999999999999888876 248999999999999999887541 1348999998
Q ss_pred hhchhhhcCCCccEEEECCCCCCC
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~ 128 (256)
.+... ..||.|++|+||+..
T Consensus 85 ~~~~~----~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 85 LKVDL----PEFNKVVSNLPYQIS 104 (258)
T ss_pred ccCCc----hhceEEEEcCCcccC
Confidence 77532 358999999999753
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=97.45 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=67.3
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.+++.+. ..++.+|||+|||+|.++..++.. . .+|+|+|+++.+++.+++++.. ...+++++|+.
T Consensus 29 ~i~~~i~~~l~---~~~~~~VLEiG~G~G~lt~~L~~~----~--~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~ 97 (272)
T PRK00274 29 NILDKIVDAAG---PQPGDNVLEIGPGLGALTEPLLER----A--AKVTAVEIDRDLAPILAETFAE--DNLTIIEGDAL 97 (272)
T ss_pred HHHHHHHHhcC---CCCcCeEEEeCCCccHHHHHHHHh----C--CcEEEEECCHHHHHHHHHhhcc--CceEEEEChhh
Confidence 34555665543 247789999999999999888876 3 2899999999999999887642 23489999988
Q ss_pred hchhhhcCCCccEEEECCCCCC
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVP 127 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~ 127 (256)
+...+ +-.+|.|++||||+.
T Consensus 98 ~~~~~--~~~~~~vv~NlPY~i 117 (272)
T PRK00274 98 KVDLS--ELQPLKVVANLPYNI 117 (272)
T ss_pred cCCHH--HcCcceEEEeCCccc
Confidence 76322 112699999999975
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-10 Score=92.13 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH------------
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE------------ 91 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~------------ 91 (256)
...|++++.... ..++.+||++|||.|.....++.. |.+|+|+|+|+.+++.+.+...
T Consensus 29 np~L~~~~~~l~----~~~~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~ 98 (226)
T PRK13256 29 NEFLVKHFSKLN----INDSSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYK 98 (226)
T ss_pred CHHHHHHHHhcC----CCCCCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHHHHHHHHHcCCCcceecccccc
Confidence 345555544321 235689999999999998888876 6689999999999998755210
Q ss_pred -HcCCcceEEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025207 92 -AHNVHADLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 92 -~~~~~~~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
..+...++.++|+++.... ...++||+|+----|...+. ....++.+.+.++|+|||.+
T Consensus 99 ~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp-------------------~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 99 LYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPN-------------------DLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred eeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCH-------------------HHHHHHHHHHHHHhCCCcEE
Confidence 0123448999999987421 12368999987544444433 23678899999999999998
Q ss_pred EEEEe
Q 025207 170 YLVTL 174 (256)
Q Consensus 170 ~~~~~ 174 (256)
++++.
T Consensus 160 lll~~ 164 (226)
T PRK13256 160 LLLVM 164 (226)
T ss_pred EEEEE
Confidence 88764
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-10 Score=91.46 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=88.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cC------C------cceEEEcchhhc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HN------V------HADLINTDIASG 107 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~------~------~~~~~~~d~~~~ 107 (256)
.++.+||.+|||.|.-...++.. |.+|+|+|+++.+++.+.+.... .. . ..++.++|+++.
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred CCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 56789999999999998888876 67999999999999988432111 10 0 126889999986
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------- 177 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------- 177 (256)
... ..++||+|+-.--+...+... ..++.+.+.++|+|||.+++++-.+.
T Consensus 110 ~~~-~~g~fD~iyDr~~l~Alpp~~-------------------R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~ 169 (218)
T PF05724_consen 110 PPE-DVGKFDLIYDRTFLCALPPEM-------------------RERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS 169 (218)
T ss_dssp GGS-CHHSEEEEEECSSTTTS-GGG-------------------HHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred Chh-hcCCceEEEEecccccCCHHH-------------------HHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence 543 235899998865555444322 67889999999999999555442111
Q ss_pred -CHHHHHHHHHHcCCcEEEEE
Q 025207 178 -DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 -~~~~~~~~~~~~g~~~~~~~ 197 (256)
..+++.+.+. .+|+++.+.
T Consensus 170 v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEEe
Confidence 2456666665 567665544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=88.37 Aligned_cols=131 Identities=21% Similarity=0.265 Sum_probs=75.4
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCC-ccEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGL-VDVMV 120 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~-fD~Ii 120 (256)
..|+|++||.|..++.+|+.. .+|+++|+++..++.|+.|+...|+.. .++++|+.+......... +|+|+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEE
Confidence 369999999999999999972 389999999999999999999998754 999999999876543233 89999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
++|||.-..=.......... ... + ....++++.+.+ +.++ +++..|......++.+...+
T Consensus 75 lSPPWGGp~Y~~~~~fdL~~-~~~-p---~~~~~l~~~~~~-~t~n--v~l~LPRn~dl~ql~~~~~~ 134 (163)
T PF09445_consen 75 LSPPWGGPSYSKKDVFDLEK-SMQ-P---FNLEDLLKAARK-ITPN--VVLFLPRNSDLNQLSQLTRE 134 (163)
T ss_dssp E---BSSGGGGGSSSB-TTT-SSS-S-----HHHHHHHHHH-H-S---EEEEEETTB-HHHHHHT---
T ss_pred ECCCCCCccccccCccCHHH-ccC-C---CCHHHHHHHHHh-hCCC--EEEEeCCCCCHHHHHHHhcc
Confidence 99999742221111111100 000 1 013455555443 3344 33334767667777666543
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-09 Score=90.30 Aligned_cols=163 Identities=21% Similarity=0.234 Sum_probs=111.3
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.+.....+..++..++. +.++.+|||+|+|.|.-+..++..+.. .+.+++.|+++..++..+.++++.|
T Consensus 64 ~G~~~vQd~sS~l~~~~L~------~~~~~~VLD~CAapGgKt~~la~~~~~---~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALD------PQPGERVLDMCAAPGGKTTHLAELMGN---KGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHT------TTTTSEEEESSCTTSHHHHHHHHHTTT---TSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCcEEeccccccccccccc------ccccccccccccCCCCceeeeeecccc---hhHHHHhccCHHHHHHHHHHHHhcC
Confidence 3444444334444444443 358899999999999999999988652 4699999999999999999999999
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhcc----cc
Q 025207 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLL----SK 165 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~L----kp 165 (256)
..+ .+...|............||.|+.++|-.... ...+.+...|.-.... ......++..+.+++ ||
T Consensus 135 ~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G---~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~ 211 (283)
T PF01189_consen 135 VFNVIVINADARKLDPKKPESKFDRVLVDAPCSGLG---TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP 211 (283)
T ss_dssp -SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGG---GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE
T ss_pred CceEEEEeeccccccccccccccchhhcCCCccchh---hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC
Confidence 877 66668887775444445799999999975432 2223333333211111 125667899999999 99
Q ss_pred CeEEEEEEeCCC---CHHHHHHHHHHc
Q 025207 166 RGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 166 gG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
||++++++++.. ....+...+++.
T Consensus 212 gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 212 GGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp EEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 999999998543 223344445544
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=85.82 Aligned_cols=124 Identities=13% Similarity=0.147 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
..-+.+.+.+.+. ..+.+|||||||||.-...++.. .|..+..-+|.++......+..+...+.++ ..+.
T Consensus 11 k~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~----lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~ 82 (204)
T PF06080_consen 11 KDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQA----LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLA 82 (204)
T ss_pred HhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHH----CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeE
Confidence 3445566666553 23346999999999998888888 788899999999999888888888877765 6667
Q ss_pred cchhhchhhh------cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 102 TDIASGLEKR------LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 102 ~d~~~~~~~~------~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.|+.+...+. ..++||.|+|.=-.+.. .+.....+++.+.++|++||.+++..|
T Consensus 83 lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~-------------------p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 83 LDVSAPPWPWELPAPLSPESFDAIFCINMLHIS-------------------PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred eecCCCCCccccccccCCCCcceeeehhHHHhc-------------------CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 7777663332 24689999982111111 123467889999999999999998664
|
The function of this family is unknown. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-09 Score=93.74 Aligned_cols=131 Identities=22% Similarity=0.206 Sum_probs=93.7
Q ss_pred cCCccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 14 HPEVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 14 ~~~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+-+|-|... ..+-+-.+...........+.+|||+.||+|..++.++.... .-..|+++|+++++++.+++|++
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~---ga~~Vv~nD~n~~Av~~i~~N~~ 90 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIE---GVREVFANDINPKAVESIKNNVE 90 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHH
Confidence 4678888766 222122111111110011246899999999999999887631 11379999999999999999999
Q ss_pred HcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 92 AHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 92 ~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.|++.. .+.+.|+...+... ..+||+|..+| |.. ...++..+.+.+++||.++
T Consensus 91 ~N~~~~~~v~~~Da~~~l~~~-~~~fDvIdlDP-fGs------------------------~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 91 YNSVENIEVPNEDAANVLRYR-NRKFHVIDIDP-FGT------------------------PAPFVDSAIQASAERGLLL 144 (374)
T ss_pred HhCCCcEEEEchhHHHHHHHh-CCCCCEEEeCC-CCC------------------------cHHHHHHHHHhcccCCEEE
Confidence 998864 89999998876542 35799999998 431 2367888888999999999
Q ss_pred EEE
Q 025207 171 LVT 173 (256)
Q Consensus 171 ~~~ 173 (256)
+..
T Consensus 145 vTa 147 (374)
T TIGR00308 145 VTA 147 (374)
T ss_pred EEe
Confidence 963
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.6e-10 Score=98.84 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=77.3
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.|+|+|||+|.+...+++...+.....+|+|+|.++.++..+++.+..+++.. +++++|+.+...+ .++|+||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---CceeEEE
Confidence 6899999999999887776664333345689999999999988888888888854 9999999998654 5999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
+-. . -.+.+. ......+....+.|||+|+++
T Consensus 264 SEl--------------L-Gsfg~n----El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SEL--------------L-GSFGDN----ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E------------------BTTBTT----TSHHHHHHHGGGGEEEEEEEE
T ss_pred Eec--------------c-CCcccc----ccCHHHHHHHHhhcCCCCEEe
Confidence 931 0 011111 135677888899999999887
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-10 Score=90.49 Aligned_cols=123 Identities=13% Similarity=0.213 Sum_probs=87.0
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH
Q 025207 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~ 80 (256)
.|..+..++.++++.|-.. ..-++-.+.+.+.... .+++.++||||+|..++ .-+++.+..+++++|.|+++
T Consensus 37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCI----YPliG~~eYgwrfvGseid~ 112 (292)
T COG3129 37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCI----YPLIGVHEYGWRFVGSEIDS 112 (292)
T ss_pred hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccc----cccccceeecceeecCccCH
Confidence 5677788999999988655 5555555555554321 25778999999999985 34555556689999999999
Q ss_pred HHHHHHHHHHHHc-CCcc--eEEEc-chhhchhhh--cCCCccEEEECCCCCCCCCc
Q 025207 81 YAVEVTRKTLEAH-NVHA--DLINT-DIASGLEKR--LAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 81 ~~i~~a~~~~~~~-~~~~--~~~~~-d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~ 131 (256)
.+++.|+.++..| ++.. ++... |-....... ..+.||+++|||||+.+..+
T Consensus 113 ~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~d 169 (292)
T COG3129 113 QSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAAD 169 (292)
T ss_pred HHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchhHHH
Confidence 9999999999988 5543 33222 221212111 25789999999999876653
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-09 Score=90.11 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=80.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----CcceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||.+|+|.|..+.++.+. .+..+++++|+++++++.|++.+..++ ...+++.+|....+.. .+++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~----~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~ 176 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRH----KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RDEK 176 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhC----CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CCCC
Confidence 35789999999999987666553 334589999999999999999876542 1238999999988744 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~ 173 (256)
||+|+++.+- +..... .. .-....+++ .+.+.|+|||++++-.
T Consensus 177 yDvIi~D~~d-p~~~~~------~~--------~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 177 FDVIIGDLAD-PVEGGP------CY--------QLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ccEEEecCCC-ccccCc------ch--------hhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999998531 100000 00 011346777 7899999999988743
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=86.01 Aligned_cols=125 Identities=19% Similarity=0.327 Sum_probs=81.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----Cc-------------------
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VH------------------- 96 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~------------------- 96 (256)
..++.+|||||-+|.+++.+++..+. ..|.|+||++..|+.|++++.... +.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~----r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGP----RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhcc----ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 37899999999999999999998653 369999999999999999875321 11
Q ss_pred -----------c--------eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH
Q 025207 97 -----------A--------DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP 157 (256)
Q Consensus 97 -----------~--------~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (256)
+ .+...|+. ......||+|+|--. .+|.+.-| |-+-+..++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl----~~~~~~fDiIlcLSi----------TkWIHLNw-----gD~GL~~ff~ 193 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFL----DMIQPEFDIILCLSI----------TKWIHLNW-----GDDGLRRFFR 193 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhh----hhccccccEEEEEEe----------eeeEeccc-----ccHHHHHHHH
Confidence 0 01111122 122457999988211 12222222 1223789999
Q ss_pred HHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025207 158 SADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 158 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
.+.++|.|||++++---++.......+..+.
T Consensus 194 kis~ll~pgGiLvvEPQpWksY~kaar~~e~ 224 (288)
T KOG2899|consen 194 KISSLLHPGGILVVEPQPWKSYKKAARRSEK 224 (288)
T ss_pred HHHHhhCcCcEEEEcCCchHHHHHHHHHHHH
Confidence 9999999999999933244444444444433
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.8e-09 Score=86.47 Aligned_cols=87 Identities=21% Similarity=0.236 Sum_probs=65.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.+++.+. ..++.+|||+|||+|.++..++.. . ..++++|+++.+++.++++... .-+.+++++|+.
T Consensus 16 ~i~~~i~~~~~---~~~~~~VLEiG~G~G~lt~~L~~~----~--~~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~ 85 (253)
T TIGR00755 16 SVIQKIVEAAN---VLEGDVVLEIGPGLGALTEPLLKR----A--KKVTAIEIDPRLAEILRKLLSL-YERLEVIEGDAL 85 (253)
T ss_pred HHHHHHHHhcC---CCCcCEEEEeCCCCCHHHHHHHHh----C--CcEEEEECCHHHHHHHHHHhCc-CCcEEEEECchh
Confidence 34455555442 246789999999999999888776 3 2699999999999999887643 123378999987
Q ss_pred hchhhhcCCCcc---EEEECCCCC
Q 025207 106 SGLEKRLAGLVD---VMVVNPPYV 126 (256)
Q Consensus 106 ~~~~~~~~~~fD---~Ii~npP~~ 126 (256)
+...+ .+| +|++|+||+
T Consensus 86 ~~~~~----~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 86 KVDLP----DFPKQLKVVSNLPYN 105 (253)
T ss_pred cCChh----HcCCcceEEEcCChh
Confidence 76432 455 999999986
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=85.01 Aligned_cols=137 Identities=11% Similarity=0.072 Sum_probs=89.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...++||.|+|.|.++-.+ |...+ + +|..+|..+..++.|++.+....... ++.+..+.++.++ +++||+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~l---Ll~~f-~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~--~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGL---LLPVF-D-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE--EGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHT---CCCC--S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEE
T ss_pred CcceEEecccccchhHHHH---HHHhc-C-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC--CCcEeEEE
Confidence 5689999999999986433 22222 2 89999999999999997665422222 7888888877654 47999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQ 185 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~ 185 (256)
+.-...+.++. .+-.+|++|...|+|+|.+++-.... +......++
T Consensus 128 ~QW~lghLTD~-------------------dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~l 188 (218)
T PF05891_consen 128 IQWCLGHLTDE-------------------DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFREL 188 (218)
T ss_dssp EES-GGGS-HH-------------------HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHH
T ss_pred ehHhhccCCHH-------------------HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHH
Confidence 96554444432 36789999999999999999854311 124588999
Q ss_pred HHHcCCcEEEEEecCCCCc
Q 025207 186 MMEKGYAARIVVQRSTEEE 204 (256)
Q Consensus 186 ~~~~g~~~~~~~~~~~~~~ 204 (256)
+++.|+.+.....+..-+.
T Consensus 189 F~~AGl~~v~~~~Q~~fP~ 207 (218)
T PF05891_consen 189 FKQAGLRLVKEEKQKGFPK 207 (218)
T ss_dssp HHHCT-EEEEEEE-TT--T
T ss_pred HHHcCCEEEEeccccCCCc
Confidence 9999999877665544433
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-09 Score=91.98 Aligned_cols=103 Identities=19% Similarity=0.309 Sum_probs=76.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.|||+|||+|.+++..|+. + ..+|+|+|-+.- ++.|.+.+..|++.. +++.+.+.+...+ .+++|+|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA----G-A~~V~aVe~S~i-a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~eKVDiI 131 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA----G-ARKVYAVEASSI-ADFARKIVKDNGLEDVITVIKGKVEDIELP--VEKVDII 131 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh----C-cceEEEEechHH-HHHHHHHHHhcCccceEEEeecceEEEecC--ccceeEE
Confidence 7899999999999999888887 3 348999997655 499999999999876 8899988887433 5899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++- |....+. -...++.++..--+.|+|||.++
T Consensus 132 vSE--------------WMGy~Ll----~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 132 VSE--------------WMGYFLL----YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eeh--------------hhhHHHH----HhhhhhhhhhhhhhccCCCceEc
Confidence 992 2221111 01124444555567899999987
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=82.67 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=97.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.|+.+|||-|+|+|.++.++++.++ |..+++.+|......+.|.+-++.+++.. .+.+.|+....-......+|.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~---ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVA---PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhC---cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccce
Confidence 6899999999999999999999874 66799999999999999999999999865 777778765432222567999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|+.+.|- ....+..+.+.||.+| +++-.++...+.....+.+.++||..+...
T Consensus 181 VFLDlPa--------------------------Pw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 181 VFLDLPA--------------------------PWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred EEEcCCC--------------------------hhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEE
Confidence 9998762 1233445556788776 666555555555667788888898765544
Q ss_pred e
Q 025207 198 Q 198 (256)
Q Consensus 198 ~ 198 (256)
.
T Consensus 235 E 235 (314)
T KOG2915|consen 235 E 235 (314)
T ss_pred E
Confidence 3
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=80.56 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=85.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh----cCCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR----LAGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~----~~~~ 115 (256)
.++++||+|.=||.-++..|..+. ++++|+++|++++.++.+.+..+..|+.. ++++++..+.+.+. ..++
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp---~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALP---EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcC---CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 679999999999999999998875 36799999999999999998888888754 89999988776543 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+++.+- ....+..+.+.+.+++++||++++
T Consensus 150 fDfaFvDa------------------------dK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 150 FDFAFVDA------------------------DKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred eeEEEEcc------------------------chHHHHHHHHHHHhhcccccEEEE
Confidence 99999851 123355889999999999999998
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-09 Score=92.53 Aligned_cols=135 Identities=18% Similarity=0.218 Sum_probs=97.0
Q ss_pred eeccCCc-cccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 11 VSSHPEV-YEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~~-~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|.+.|+. |+-.+. .+.++..+-+.... ..++.++|++||||.+++++++.. ..|+|+|+++.+++.|++
T Consensus 353 F~iSp~AFFQ~Nt~~aevLys~i~e~~~l---~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~ 423 (534)
T KOG2187|consen 353 FRISPGAFFQTNTSAAEVLYSTIGEWAGL---PADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEK 423 (534)
T ss_pred EEECCchhhccCcHHHHHHHHHHHHHhCC---CCCcEEEEEeecCCceehhhhccc------cceeeeecChhhcchhhh
Confidence 4455543 444433 67777777666542 466999999999999998888752 389999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCC---Ccc-EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 89 TLEAHNVHA-DLINTDIASGLEKRLAG---LVD-VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~---~fD-~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
|...||+.+ +|+++..++..+..... +-+ ++|.+||=. |+ ...++..+..+-
T Consensus 424 nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~---------------------Gl--h~~~ik~l~~~~ 480 (534)
T KOG2187|consen 424 NAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRK---------------------GL--HMKVIKALRAYK 480 (534)
T ss_pred cchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCcc---------------------cc--cHHHHHHHHhcc
Confidence 999999988 99999777776554332 445 778888831 11 346677777665
Q ss_pred ccCeEEEEEEeCCC
Q 025207 164 SKRGWLYLVTLTAN 177 (256)
Q Consensus 164 kpgG~l~~~~~~~~ 177 (256)
++--.+++++....
T Consensus 481 ~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 481 NPRRLVYVSCNPHT 494 (534)
T ss_pred CccceEEEEcCHHH
Confidence 67777777655443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.4e-09 Score=89.79 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=79.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------C----CcceEEEcchhhchh-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------N----VHADLINTDIASGLE- 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~----~~~~~~~~d~~~~~~- 109 (256)
++.+|||+|||-|.- +.+.... .. ..++|+|++...++.|+++.... . ....++.+|......
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~-~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKA-KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchh---HHHHHhc-CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 789999999998875 3444332 22 38999999999999999988321 1 122678887764321
Q ss_pred -hhcC--CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 110 -KRLA--GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 110 -~~~~--~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
.+.+ ..||+|-|...++..-. .......++..+.+.|+|||+++.+++ ....+...+
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~Fe-----------------se~~ar~~l~Nvs~~Lk~GG~FIgT~~---d~~~i~~~l 196 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAFE-----------------SEEKARQFLKNVSSLLKPGGYFIGTTP---DSDEIVKRL 196 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGGS-----------------SHHHHHHHHHHHHHTEEEEEEEEEEEE----HHHHHCCH
T ss_pred hhccccCCCcceeehHHHHHHhcC-----------------CHHHHHHHHHHHHHhcCCCCEEEEEec---CHHHHHHHH
Confidence 1222 48999999654433222 233467899999999999999999877 344555555
Q ss_pred HH
Q 025207 187 ME 188 (256)
Q Consensus 187 ~~ 188 (256)
.+
T Consensus 197 ~~ 198 (331)
T PF03291_consen 197 RE 198 (331)
T ss_dssp HC
T ss_pred Hh
Confidence 44
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-09 Score=90.93 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=90.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH-------HHHHHHHHcCCcc---eEEEcchhhchhh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE-------VTRKTLEAHNVHA---DLINTDIASGLEK 110 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~-------~a~~~~~~~~~~~---~~~~~d~~~~~~~ 110 (256)
++|+.|+|+..|||.+.+.++.. |+.|.|.||+-.++. ..+.|+++.|... .+..+|.......
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR 280 (421)
T ss_pred CCCCEEecCccccCceeeehhhh------cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh
Confidence 68999999999999998887775 679999999999887 3356777777433 7888888776433
Q ss_pred hcCCCccEEEECCCCCCCCCcccc-cccc--------hhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 111 RLAGLVDVMVVNPPYVPTPEDEVG-REGI--------ASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~-~~~~--------~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
....||.|||+|||......++. .+.. ...+. .... ...+.+++.-..+.|..||++++..+.
T Consensus 281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~-p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHY-PSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccC-CccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 25789999999999876654322 1111 11111 1111 124566778889999999999997763
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.1e-09 Score=82.97 Aligned_cols=127 Identities=21% Similarity=0.301 Sum_probs=74.6
Q ss_pred hHHHHHHHHH-hhcccccCCCCEEEEecccccHHHHHHHHHhcc----cCC-CceEEEEeCCHHHHHHHHHHH-------
Q 025207 24 SFALVDALLA-DRINLVEHHPVLCMEVGCGSGYVITSLALMLGQ----EVP-GVQYIATDINPYAVEVTRKTL------- 90 (256)
Q Consensus 24 ~~~l~~~l~~-~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~----~~~-~~~v~giD~~~~~i~~a~~~~------- 90 (256)
.+.+.+.+++ .+......+..+|+.+||+||.-+-.+|..+.+ ..+ ..+|+|+|+|+.+++.|++-+
T Consensus 12 f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~ 91 (196)
T PF01739_consen 12 FEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLR 91 (196)
T ss_dssp HHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGT
T ss_pred HHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 5667777774 332222246789999999999866666665544 112 479999999999999997621
Q ss_pred -------HHc-------CC--------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025207 91 -------EAH-------NV--------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 91 -------~~~-------~~--------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
... +. ...|...|+.+. ....+.||+|+|-=.+. +| .
T Consensus 92 ~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~--~~~~~~fD~I~CRNVlI--------------YF-----~ 150 (196)
T PF01739_consen 92 GLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP--DPPFGRFDLIFCRNVLI--------------YF-----D 150 (196)
T ss_dssp TS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGG--------------GS------
T ss_pred hhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC--CcccCCccEEEecCEEE--------------Ee-----C
Confidence 110 11 116777888772 22347899999932221 11 1
Q ss_pred HHHHHHHHHHHhhccccCeEEEE
Q 025207 149 RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
......+++.+++.|+|||.+++
T Consensus 151 ~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 151 PETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEE
Confidence 23468999999999999999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9e-09 Score=81.24 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=85.6
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--------c-
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--------H- 96 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--------~- 96 (256)
.+...+++++... -.++.+.||+|+|+|.++.+++.+++. ++...+|||.-++.++.+++|+...-. .
T Consensus 67 ~mha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~--~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 67 HMHATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGA--TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred HHHHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcC--CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 3444455555321 158999999999999999999988873 444569999999999999999976531 1
Q ss_pred --ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 97 --ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 97 --~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
..++.+|......+ ..+||.|.+..- ...+.+.+...|++||++++.
T Consensus 144 ~~l~ivvGDgr~g~~e--~a~YDaIhvGAa---------------------------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 144 GELSIVVGDGRKGYAE--QAPYDAIHVGAA---------------------------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CceEEEeCCccccCCc--cCCcceEEEccC---------------------------ccccHHHHHHhhccCCeEEEe
Confidence 16888888777554 478999988411 235567777889999999983
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=84.11 Aligned_cols=99 Identities=22% Similarity=0.299 Sum_probs=76.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...+|+|||+|+|.+++.+++. +|+.+++.+|. |..++.+++ .-..+++.+|+.+.. +. +|+++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~~----P~-~D~~~l 164 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARA----YPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDPL----PV-ADVYLL 164 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHH----STTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTCC----SS-ESEEEE
T ss_pred CccEEEeccCcchHHHHHHHHH----CCCCcceeecc-Hhhhhcccc-----ccccccccccHHhhh----cc-ccceee
Confidence 5579999999999998888877 99999999998 888888877 223489999998442 23 999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC--eEEEEEEe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR--GWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~ 174 (256)
.-.++..++. ....+|+++++.|+|| |+++++..
T Consensus 165 ~~vLh~~~d~-------------------~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 165 RHVLHDWSDE-------------------DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp ESSGGGS-HH-------------------HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ehhhhhcchH-------------------HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 5554443332 3678999999999999 99999775
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-08 Score=78.01 Aligned_cols=127 Identities=14% Similarity=0.199 Sum_probs=80.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+...|.|+|||.+.++ +.+. .+.+|+.+|+-.. +..+...|+... |..++++|++|+
T Consensus 72 ~~~viaD~GCGdA~la----~~~~---~~~~V~SfDLva~--------------n~~Vtacdia~v--PL~~~svDv~Vf 128 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLA----KAVP---NKHKVHSFDLVAP--------------NPRVTACDIANV--PLEDESVDVAVF 128 (219)
T ss_dssp TTS-EEEES-TT-HHH----HH-----S---EEEEESS-S--------------STTEEES-TTS---S--TT-EEEEEE
T ss_pred CCEEEEECCCchHHHH----Hhcc---cCceEEEeeccCC--------------CCCEEEecCccC--cCCCCceeEEEE
Confidence 4579999999999964 4332 1347999998543 126888999776 445789999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCcEEEEEec
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
..-..- ..+..++.++.++||+||.+.+.....+ ......+.+...||+.....
T Consensus 129 cLSLMG----------------------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d-- 184 (219)
T PF05148_consen 129 CLSLMG----------------------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD-- 184 (219)
T ss_dssp ES---S----------------------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred EhhhhC----------------------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc--
Confidence 643321 1278999999999999999999776443 45677888888999875532
Q ss_pred CCCCccEEEEEEEecCc
Q 025207 200 STEEENLHIIKFWRDFD 216 (256)
Q Consensus 200 ~~~~~~~~l~~~~~~~~ 216 (256)
.....+++.++.|...
T Consensus 185 -~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 185 -ESNKHFVLFEFKKIRK 200 (219)
T ss_dssp ---STTEEEEEEEE-SS
T ss_pred -cCCCeEEEEEEEEcCc
Confidence 3345778888887663
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=85.60 Aligned_cols=140 Identities=17% Similarity=0.130 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-------Ccc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-------VHA 97 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-------~~~ 97 (256)
+-+-+||...+.....+++..++|+|||-|.-++-.-+. +- ..++|+||.+..|+.|+++..... .+.
T Consensus 100 RnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA----gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a 174 (389)
T KOG1975|consen 100 RNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA----GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA 174 (389)
T ss_pred hhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhh----cc-cceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence 334456655554444578899999999999874332222 22 379999999999999998765321 123
Q ss_pred eEEEcchhhchh----hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 98 DLINTDIASGLE----KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 98 ~~~~~d~~~~~~----~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.++.+|...... ++.+-+||+|-|...++..-.. ..-...++.++.+.|+|||+++-..
T Consensus 175 ~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFet-----------------ee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 175 VFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFET-----------------EESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred EEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeecc-----------------HHHHHHHHHHHHhhcCCCcEEEEec
Confidence 788888765432 1123449999997665433222 1235678999999999999999876
Q ss_pred eCCCCHHHHHHHHHHc
Q 025207 174 LTANDPSQICLQMMEK 189 (256)
Q Consensus 174 ~~~~~~~~~~~~~~~~ 189 (256)
| ....+...++..
T Consensus 238 P---dsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 238 P---DSDVIIKRLRAG 250 (389)
T ss_pred C---cHHHHHHHHHhc
Confidence 6 345666666554
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-07 Score=75.20 Aligned_cols=133 Identities=18% Similarity=0.263 Sum_probs=82.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++||=+|=.. ..+++++.. ++..+|+.+|+++..++..++..++.|++.+.+..|+.+.+++...++||+++
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~----~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALT----GLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHH----T--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEE
T ss_pred ccCCEEEEEcCCc-HHHHHHHhh----CCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEE
Confidence 3689999888433 345555543 33459999999999999999999999999999999999999887789999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeCCCC--H---HHHHHHHHHcCCcEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLTAND--P---SQICLQMMEKGYAAR 194 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~--~---~~~~~~~~~~g~~~~ 194 (256)
++|||- ..-+.-|+.+..+.||..| ..++ ..+... . .++++.+.+.|+-..
T Consensus 118 TDPPyT----------------------~~G~~LFlsRgi~~Lk~~g~~gy~-~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 118 TDPPYT----------------------PEGLKLFLSRGIEALKGEGCAGYF-GFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp E---SS----------------------HHHHHHHHHHHHHTB-STT-EEEE-EE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred eCCCCC----------------------HHHHHHHHHHHHHHhCCCCceEEE-EEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 999985 2336788999999999877 4444 333332 2 267888888898776
Q ss_pred EEEecCC
Q 025207 195 IVVQRST 201 (256)
Q Consensus 195 ~~~~~~~ 201 (256)
.+.+..+
T Consensus 175 dii~~Fn 181 (243)
T PF01861_consen 175 DIIPDFN 181 (243)
T ss_dssp EEEEEEE
T ss_pred HHHhhhc
Confidence 6665543
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.1e-08 Score=79.84 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=80.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-----cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-----HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||=+|-|.|..+.++.+. .+-.+++++|+++..++.|++.+..... ..+++.+|....+....+.+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~----~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKH----PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTS----TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhc----CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 47899999999999975544433 3345899999999999999998765321 23899999999887643338
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
||+|+.+.+- +..... .+ ....+++.+.+.|+|+|++++...+.
T Consensus 151 yDvIi~D~~d-p~~~~~--------~l--------~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 151 YDVIIVDLTD-PDGPAP--------NL--------FTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEEEEEESSS-TTSCGG--------GG--------SSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred ccEEEEeCCC-CCCCcc--------cc--------cCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 9999997653 111100 01 13688999999999999999865433
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.1e-08 Score=74.69 Aligned_cols=79 Identities=8% Similarity=0.030 Sum_probs=59.8
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---C-cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025207 74 IATDINPYAVEVTRKTLEAHN---V-HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 74 ~giD~~~~~i~~a~~~~~~~~---~-~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
+|+|+|++|++.|+++..... . ..+++++|+.+. ++.+++||+|++..-+.+.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~v~~~~~l~~~~d------------------- 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL--PFDDCEFDAVTMGYGLRNVVD------------------- 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC--CCCCCCeeEEEecchhhcCCC-------------------
Confidence 489999999999987765322 1 248999999876 345678999999654433221
Q ss_pred HHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 150 AVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
...++++++++|||||.+++....
T Consensus 60 --~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 60 --RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred --HHHHHHHHHHHcCcCeEEEEEECC
Confidence 568899999999999999987643
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=82.55 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=75.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..+.++|+|||+|.-++-++.. + + +|+|+|+++.|++.|++....... +..+...+..+.... ++++|+|
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~----~-k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~--e~SVDlI 104 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEH----Y-K-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG--EESVDLI 104 (261)
T ss_pred CcceEEEeccCCCcchHHHHHh----h-h-hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC--Ccceeee
Confidence 3459999999999866666665 2 3 799999999999998875432211 113444444443222 6899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeCCC--CHHHHHHHHHHcCC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLTAN--DPSQICLQMMEKGY 191 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~--~~~~~~~~~~~~g~ 191 (256)
++-=. .+ +-.++.+...+.++|++.| .+.+..-..+ .-.+....+.+...
T Consensus 105 ~~Aqa----------------~H------WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010|consen 105 TAAQA----------------VH------WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD 157 (261)
T ss_pred hhhhh----------------HH------hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhh
Confidence 98311 11 2237889999999999887 5544332211 12355555555433
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=72.65 Aligned_cols=123 Identities=19% Similarity=0.115 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
+..+++.+...+. ...+.-|||+|.|||.++-++.... .+...++++|+|++.+....+... ..+++++|
T Consensus 33 Ss~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~g---v~~~~L~~iE~~~dF~~~L~~~~p----~~~ii~gd 102 (194)
T COG3963 33 SSILARKMASVID---PESGLPVLELGPGTGVITKAILSRG---VRPESLTAIEYSPDFVCHLNQLYP----GVNIINGD 102 (194)
T ss_pred cHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcC---CCccceEEEEeCHHHHHHHHHhCC----Cccccccc
Confidence 5777888877764 2567899999999999987766653 345689999999999887766542 23688888
Q ss_pred hhhch---hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 104 IASGL---EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 104 ~~~~~---~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+.+.- .++....||.|+|..|+-..+-. ....+++.+...|..||-++..+-+
T Consensus 103 a~~l~~~l~e~~gq~~D~viS~lPll~~P~~-------------------~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 103 AFDLRTTLGEHKGQFFDSVISGLPLLNFPMH-------------------RRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hhhHHHHHhhcCCCeeeeEEeccccccCcHH-------------------HHHHHHHHHHHhcCCCCeEEEEEec
Confidence 87764 23334569999999888655532 2568899999999999999986654
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.4e-08 Score=72.53 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=60.9
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccH-HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGY-VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~-~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
.+++++.+.+. ..++.+|+|+|||+|. ++..+++. +..|+|+|+++.+++.++++. .+++..|+
T Consensus 3 ~i~~~l~~~~~---~~~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~~------~~~v~dDl 67 (134)
T PRK04148 3 TIAEFIAENYE---KGKNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKLG------LNAFVDDL 67 (134)
T ss_pred HHHHHHHHhcc---cccCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhC------CeEEECcC
Confidence 35566665543 3466899999999996 66655543 569999999999998887652 27999999
Q ss_pred hhchhhhcCCCccEEEE-CCC
Q 025207 105 ASGLEKRLAGLVDVMVV-NPP 124 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~-npP 124 (256)
++..... -+.+|+|.+ .||
T Consensus 68 f~p~~~~-y~~a~liysirpp 87 (134)
T PRK04148 68 FNPNLEI-YKNAKLIYSIRPP 87 (134)
T ss_pred CCCCHHH-HhcCCEEEEeCCC
Confidence 8875442 367999997 444
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-07 Score=73.49 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=97.0
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECC
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
|.|+||--|.+++++.+. +.--.++++|+++.-++.|++++...++.. ++..+|..+.+.+. +..|.|+.-
T Consensus 1 vaDIGtDHgyLpi~L~~~----~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~--e~~d~ivIA- 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN----GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG--EDVDTIVIA- 73 (205)
T ss_dssp EEEET-STTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG--G---EEEEE-
T ss_pred CceeccchhHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC--CCCCEEEEe-
Confidence 689999999999988886 333479999999999999999999998765 88899988776542 236887661
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCC
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEE 203 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 203 (256)
|+. -.....+++.....++....+++ .| ......+++++.+.||............
T Consensus 74 ---------------------GMG-G~lI~~ILe~~~~~~~~~~~lIL-qP-~~~~~~LR~~L~~~gf~I~~E~lv~e~~ 129 (205)
T PF04816_consen 74 ---------------------GMG-GELIIEILEAGPEKLSSAKRLIL-QP-NTHAYELRRWLYENGFEIIDEDLVEENG 129 (205)
T ss_dssp ---------------------EE--HHHHHHHHHHTGGGGTT--EEEE-EE-SS-HHHHHHHHHHTTEEEEEEEEEEETT
T ss_pred ---------------------cCC-HHHHHHHHHhhHHHhccCCeEEE-eC-CCChHHHHHHHHHCCCEEEEeEEEeECC
Confidence 222 24567888888777776667776 44 4568899999999999876655555555
Q ss_pred ccEEEEEEEecCccc
Q 025207 204 ENLHIIKFWRDFDIQ 218 (256)
Q Consensus 204 ~~~~l~~~~~~~~~~ 218 (256)
-.+.++.+.+.....
T Consensus 130 ~~YeIi~~~~~~~~~ 144 (205)
T PF04816_consen 130 RFYEIIVAERGEEKP 144 (205)
T ss_dssp EEEEEEEEEESSS--
T ss_pred EEEEEEEEEeCCCCC
Confidence 455566666655444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-07 Score=73.15 Aligned_cols=120 Identities=23% Similarity=0.325 Sum_probs=70.6
Q ss_pred cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc------------------------
Q 025207 38 LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH------------------------ 93 (256)
Q Consensus 38 ~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~------------------------ 93 (256)
+....+.+++|+|||+|.++.-+..+ +... =..|+|.|+++++++.|++|+...
T Consensus 47 l~~~~p~tLyDPCCG~gyLLTVlGLL-h~~~-l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~ 124 (246)
T PF11599_consen 47 LEGKGPYTLYDPCCGSGYLLTVLGLL-HRRR-LRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSH 124 (246)
T ss_dssp SSS-S-EEEEETT-TTSHHHHHHHHH-TGGG-EEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHH
T ss_pred hcCCCCeeeeccCCCccHHHHHHHHh-hhHH-HHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchH
Confidence 34567899999999999987666654 2211 137999999999999998876211
Q ss_pred -----------------C--CcceEEEcchhhchhh--h-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHH
Q 025207 94 -----------------N--VHADLINTDIASGLEK--R-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAV 151 (256)
Q Consensus 94 -----------------~--~~~~~~~~d~~~~~~~--~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (256)
| .+..+.+.|+++.... . .....|+|+.+.||....+ +.++.+.+.
T Consensus 125 ~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~------------W~g~~~~~p 192 (246)
T PF11599_consen 125 AEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTS------------WQGEGSGGP 192 (246)
T ss_dssp HHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSS------------TTS---HHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccc------------ccCCCCCCc
Confidence 1 0114777777775431 1 1244799999999986543 333344556
Q ss_pred HHHHHHHHhhccccCeEEEE
Q 025207 152 IDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 152 ~~~~l~~~~~~LkpgG~l~~ 171 (256)
...++..++.+|-+++++.+
T Consensus 193 ~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 193 VAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHHCCS-TT-EEEE
T ss_pred HHHHHHHHHhhCCCCcEEEE
Confidence 88999999999955555555
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-07 Score=80.16 Aligned_cols=146 Identities=16% Similarity=0.072 Sum_probs=97.3
Q ss_pred cceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025207 7 QIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+..++-.|+.|.-|.+...+-+...+-...+ .++..++|+|||+|.-+..+...+.+.....+++++|+|.++++.+
T Consensus 43 LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a 120 (319)
T TIGR03439 43 LFEEITYSPEYYLTNDEIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRT 120 (319)
T ss_pred HHHHHHcCCccCChHHHHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence 34556678999977777666655544333333 3567899999999998777777765444457899999999999999
Q ss_pred HHHHHHcC---CcceEEEcchhhchhhh----cCCCccEEEEC-CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH
Q 025207 87 RKTLEAHN---VHADLINTDIASGLEKR----LAGLVDVMVVN-PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS 158 (256)
Q Consensus 87 ~~~~~~~~---~~~~~~~~d~~~~~~~~----~~~~fD~Ii~n-pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (256)
..++.... +...-+++|+.+.+... ......+++.- --+.+ +.+ .....+++.
T Consensus 121 ~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGN--------f~~-----------~ea~~fL~~ 181 (319)
T TIGR03439 121 LAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGN--------FSR-----------PEAAAFLAG 181 (319)
T ss_pred HHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccC--------CCH-----------HHHHHHHHH
Confidence 99887322 33366888887764321 12234555441 11111 111 225688999
Q ss_pred Hhh-ccccCeEEEEEE
Q 025207 159 ADK-LLSKRGWLYLVT 173 (256)
Q Consensus 159 ~~~-~LkpgG~l~~~~ 173 (256)
+++ .|+|||.+++-.
T Consensus 182 ~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 182 FLATALSPSDSFLIGL 197 (319)
T ss_pred HHHhhCCCCCEEEEec
Confidence 999 999999988844
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-08 Score=81.26 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=69.0
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
++.+.+... ..++..|||||+|.|.+|..+++. ...|+++|+++.+++..++... ..-+.+++++|+...
T Consensus 19 ~~kIv~~a~---~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~ 88 (259)
T COG0030 19 IDKIVEAAN---ISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHhcC---CCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcC
Confidence 445555432 245899999999999999998887 3489999999999999988765 222338999999887
Q ss_pred hhhhcCCCccEEEECCCCCCCC
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
..+.. ..++.|++|.||+.++
T Consensus 89 d~~~l-~~~~~vVaNlPY~Iss 109 (259)
T COG0030 89 DFPSL-AQPYKVVANLPYNISS 109 (259)
T ss_pred cchhh-cCCCEEEEcCCCcccH
Confidence 43211 1689999999998654
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-08 Score=80.68 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=67.5
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
.+++..|||+|.|||.++..+.+. +.+|+|+|+++.|+....++++...... +++.+|+..... -.||
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~----P~fd 125 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL----PRFD 125 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC----cccc
Confidence 378999999999999999877776 5699999999999999999876444333 899999987633 3799
Q ss_pred EEEECCCCCCCCC
Q 025207 118 VMVVNPPYVPTPE 130 (256)
Q Consensus 118 ~Ii~npP~~~~~~ 130 (256)
.+|+|.||..++.
T Consensus 126 ~cVsNlPyqISSp 138 (315)
T KOG0820|consen 126 GCVSNLPYQISSP 138 (315)
T ss_pred eeeccCCccccCH
Confidence 9999999987765
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-07 Score=77.44 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=82.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCCcc
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~fD 117 (256)
+++||-+|-|.|..+.++.+. .+-.+++.+||++..++.+++.+.... . ..+++..|..+.+.... .+||
T Consensus 77 pk~VLiiGgGdG~tlRevlkh----~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~-~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKH----LPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE-EKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHhc----CCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC-CcCC
Confidence 379999999999988777776 334589999999999999999887543 1 12899999999887653 4899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++-.-..-+ .. .-+...+.+.|.+.|+++|+++.-+
T Consensus 152 vIi~D~tdp~gp---------~~--------~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 152 VIIVDSTDPVGP---------AE--------ALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEEcCCCCCCc---------cc--------ccCCHHHHHHHHHhcCCCcEEEEec
Confidence 999963211000 00 1124688999999999999999853
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.9e-08 Score=80.29 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----CceEEEEeCCHHHHHHHHHHHHH-----c
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-----GVQYIATDINPYAVEVTRKTLEA-----H 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~-----~~~v~giD~~~~~i~~a~~~~~~-----~ 93 (256)
...+.+.+++.+..-......+|+-+||+||.-+-.+|..|.+..+ ..+|+|+|||..+++.|+.-+.. .
T Consensus 78 f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 78 FEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 5666677777653211124789999999999755555555444342 58999999999999999652211 1
Q ss_pred CCc-------------------------ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025207 94 NVH-------------------------ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 94 ~~~-------------------------~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
+++ ..|...|+.+..+ ..+.||+|+|-= ...+| .
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRN--------------VLIYF-----d 216 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRN--------------VLIYF-----D 216 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcc--------------eEEee-----C
Confidence 110 0344555544432 457899999921 11111 1
Q ss_pred HHHHHHHHHHHhhccccCeEEEE
Q 025207 149 RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
......++...+..|+|||.+++
T Consensus 217 ~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 217 EETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEE
Confidence 23478899999999999999998
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.7e-08 Score=81.34 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=74.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccC----CCceEEEEeCCHHHHHHHHHHHHH-----------------------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEV----PGVQYIATDINPYAVEVTRKTLEA-----------------------HN 94 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~----~~~~v~giD~~~~~i~~a~~~~~~-----------------------~~ 94 (256)
...+|+..||+||.-+-.+|..+.+.. .+.+|+|+|+|+.+++.|++-+.. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 358999999999976666666554321 147899999999999999874210 00
Q ss_pred ---C----c--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 95 ---V----H--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 95 ---~----~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
+ . ..|...|+.+...+ ..+.||+|+|.-.+.+.. ......++..+++.|+|
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~-------------------~~~~~~vl~~l~~~L~p 254 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFD-------------------KTTQERILRRFVPLLKP 254 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCC-------------------HHHHHHHHHHHHHHhCC
Confidence 0 0 16777777663211 247899999932222211 12367899999999999
Q ss_pred CeEEEE
Q 025207 166 RGWLYL 171 (256)
Q Consensus 166 gG~l~~ 171 (256)
||++++
T Consensus 255 gG~L~l 260 (287)
T PRK10611 255 DGLLFA 260 (287)
T ss_pred CcEEEE
Confidence 998877
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-07 Score=78.91 Aligned_cols=143 Identities=16% Similarity=0.089 Sum_probs=101.5
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++++.||||.|+..|.-+..+|.+++. ...|+|-|.+...++....|+.+.|+.+ .+.+.|..++......++||-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn---~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKN---TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcC---CceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccce
Confidence 579999999999999999999988863 3489999999999999999999999887 777888876543334458999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCC----CcHHHHHHHHHHHhhccccCeEEEEEEeCCCC--HHHHHHHHHH
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGE----NGRAVIDKILPSADKLLSKRGWLYLVTLTAND--PSQICLQMME 188 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~ 188 (256)
|+.+-|..-..- ..+.....+.... .-.....+++.....++++||+++.++++-.. .+.+.+++..
T Consensus 316 VLLDAPCSGtgv---i~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~ 388 (460)
T KOG1122|consen 316 VLLDAPCSGTGV---ISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALK 388 (460)
T ss_pred eeecCCCCCCcc---cccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHH
Confidence 999988754111 1111111111000 00114567788899999999999999986542 2344444443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4e-06 Score=67.42 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=110.2
Q ss_pred ccceeeeccCC----ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH
Q 025207 6 AQIRLVSSHPE----VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 6 ~~~~~~~~~~~----~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~ 80 (256)
|+=+.+.+... .|+-+.. ...|+..++.-+..++-+++.+||-+|.++|+-.-.++..++ ++..|+|+|.++
T Consensus 32 YGEk~i~~~~~~~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg---~~G~VYaVEfs~ 108 (229)
T PF01269_consen 32 YGEKRISVEGEGKKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVG---PDGVVYAVEFSP 108 (229)
T ss_dssp SSSEEEEETTE---EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHT---TTSEEEEEESSH
T ss_pred cCceeEeecCCCCccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccC---CCCcEEEEEecc
Confidence 33344444444 5665555 788888888877767778999999999999998777777764 567999999999
Q ss_pred HHHHHHHHHHHHcCCcceEEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH
Q 025207 81 YAVEVTRKTLEAHNVHADLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA 159 (256)
Q Consensus 81 ~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (256)
...+..-.-.+ ...+.-.+..|+..+..- ..-+.+|+|+++-..- +-..-++.++
T Consensus 109 r~~rdL~~la~-~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp-----------------------~Qa~I~~~Na 164 (229)
T PF01269_consen 109 RSMRDLLNLAK-KRPNIIPILEDARHPEKYRMLVEMVDVIFQDVAQP-----------------------DQARIAALNA 164 (229)
T ss_dssp HHHHHHHHHHH-HSTTEEEEES-TTSGGGGTTTS--EEEEEEE-SST-----------------------THHHHHHHHH
T ss_pred hhHHHHHHHhc-cCCceeeeeccCCChHHhhcccccccEEEecCCCh-----------------------HHHHHHHHHH
Confidence 87765543332 222335677888765321 1235899999974321 0134567788
Q ss_pred hhccccCeEEEEEEeCC-----CCH----HHHHHHHHHcCCcEEE-EEecCCCCccEEEEEEE
Q 025207 160 DKLLSKRGWLYLVTLTA-----NDP----SQICLQMMEKGYAARI-VVQRSTEEENLHIIKFW 212 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~-----~~~----~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~ 212 (256)
...||+||.++++.... ... ....+.+++.+|+... +.......++..++...
T Consensus 165 ~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 165 RHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp HHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE
T ss_pred HhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEEe
Confidence 88999999999876421 112 2345566667888744 55555666666665443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-06 Score=71.67 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=93.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhh-hcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEK-RLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~-~~~~~fD 117 (256)
+.+.+||||.||.|...+.+....... ...|...|.++..++..++.++..|+.. +|.++|+++...- ..+-..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 578999999999999887777663321 2589999999999999999999999976 8999999886321 1234578
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-CCHHHHHHHHHH
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-NDPSQICLQMME 188 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~~~ 188 (256)
++|..--|-..++ .+.....+..+.+.+.|||.+++...++ .+.+.+...+..
T Consensus 212 l~iVsGL~ElF~D------------------n~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lts 265 (311)
T PF12147_consen 212 LAIVSGLYELFPD------------------NDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTS 265 (311)
T ss_pred EEEEecchhhCCc------------------HHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhc
Confidence 8887544432222 2345667888999999999999855333 334445555544
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.1e-07 Score=73.17 Aligned_cols=125 Identities=15% Similarity=0.292 Sum_probs=88.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
....|-|+|||-+.++ .. .+ ..|+.+|+-+. +.+++..|+.+. +..+++.|++|+
T Consensus 180 ~~~vIaD~GCGEakiA----~~----~~-~kV~SfDL~a~--------------~~~V~~cDm~~v--Pl~d~svDvaV~ 234 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIA----SS----ER-HKVHSFDLVAV--------------NERVIACDMRNV--PLEDESVDVAVF 234 (325)
T ss_pred CceEEEecccchhhhh----hc----cc-cceeeeeeecC--------------CCceeeccccCC--cCccCcccEEEe
Confidence 5689999999999963 31 12 37999997432 237888999886 555899999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCcEEEEEec
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
+.-.. | ..+..++.++.++|++||.+++.....+ ....+.+.+...||.....
T Consensus 235 CLSLM------------------g----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~--- 289 (325)
T KOG3045|consen 235 CLSLM------------------G----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK--- 289 (325)
T ss_pred eHhhh------------------c----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh---
Confidence 64321 1 1268999999999999999999765443 4456888888999985433
Q ss_pred CCCCccEEEEEEEecCc
Q 025207 200 STEEENLHIIKFWRDFD 216 (256)
Q Consensus 200 ~~~~~~~~l~~~~~~~~ 216 (256)
......+++.++.+-+.
T Consensus 290 d~~n~~F~lfefkK~~~ 306 (325)
T KOG3045|consen 290 DVSNKYFTLFEFKKTPK 306 (325)
T ss_pred hhhcceEEEEEEecCCc
Confidence 23344556777766443
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=77.29 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=33.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHH
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV 85 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~ 85 (256)
.++++|||+|||+|.++..+++. + ..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~----g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK----G-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc----C-CCEEEEEeCCHHHHHH
Confidence 46789999999999999888875 2 2489999999988765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-07 Score=78.01 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=67.2
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025207 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
+.+.+++.+. ..++..++|.+||.|..+..+++.+. +++.|+|+|.++.+++.|++++.. .-...++++|+.+
T Consensus 7 ll~Evl~~L~---~~pg~~vlD~TlG~GGhS~~il~~~~---~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~ 79 (296)
T PRK00050 7 LLDEVVDALA---IKPDGIYVDGTFGGGGHSRAILERLG---PKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSN 79 (296)
T ss_pred cHHHHHHhhC---CCCCCEEEEeCcCChHHHHHHHHhCC---CCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHH
Confidence 3444555543 25778999999999999998888732 357999999999999999988765 2234899999887
Q ss_pred chhhhcC--CCccEEEECC
Q 025207 107 GLEKRLA--GLVDVMVVNP 123 (256)
Q Consensus 107 ~~~~~~~--~~fD~Ii~np 123 (256)
......+ .++|.|++|.
T Consensus 80 l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHHHcCCCccCEEEECC
Confidence 6433222 2799999965
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-06 Score=72.40 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=67.5
Q ss_pred CCC--EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc------CC----cceEEEcchhhchh
Q 025207 42 HPV--LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH------NV----HADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~--~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~------~~----~~~~~~~d~~~~~~ 109 (256)
++. +|||+-+|+|..++.++.. ++.|+++|-++.+....++++... +. ..+++++|..+.+.
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 444 8999999999999988876 678999999999999999999874 21 23788999998876
Q ss_pred hhcCCCccEEEECCCCCCCCC
Q 025207 110 KRLAGLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~ 130 (256)
.. ..+||+|+++|||-+...
T Consensus 160 ~~-~~~fDVVYlDPMfp~~~k 179 (250)
T PRK10742 160 DI-TPRPQVVYLDPMFPHKQK 179 (250)
T ss_pred hC-CCCCcEEEECCCCCCCcc
Confidence 53 347999999999976443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-07 Score=74.95 Aligned_cols=95 Identities=20% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...++||||+|.|.++..++.. +. +|+++|.|+.|....++ .|.. ++ +..+... .+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~----f~--~v~aTE~S~~Mr~rL~~----kg~~--vl--~~~~w~~--~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL----FK--EVYATEASPPMRWRLSK----KGFT--VL--DIDDWQQ--TDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh----cc--eEEeecCCHHHHHHHHh----CCCe--EE--ehhhhhc--cCCceEEEee
Confidence 5689999999999999888887 33 69999999999765544 3332 22 2223211 2468999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-=. + +..+....+++.+++.|+|+|++++..
T Consensus 158 LNv-----------------L----DRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 158 LNV-----------------L----DRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhh-----------------h----hccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 210 0 011125688999999999999988743
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-07 Score=75.79 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=79.6
Q ss_pred ccCCccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 13 SHPEVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 13 ~~~~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
-...++..+++ .+.++......+ ....|+|..||.|..++..+.. ++.|+++|++|..+..|+.|+
T Consensus 69 d~e~wfsvTpe~ia~~iA~~v~~~~------~~~~iidaf~g~gGntiqfa~~------~~~VisIdiDPikIa~AkhNa 136 (263)
T KOG2730|consen 69 DREGWFSVTPEKIAEHIANRVVACM------NAEVIVDAFCGVGGNTIQFALQ------GPYVIAIDIDPVKIACARHNA 136 (263)
T ss_pred cccceEEeccHHHHHHHHHHHHHhc------CcchhhhhhhcCCchHHHHHHh------CCeEEEEeccHHHHHHHhccc
Confidence 34445544443 455555444443 4578999999999999988887 458999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhh--cCCCccEEEECCCCCCCC
Q 025207 91 EAHNVHA--DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~ 129 (256)
+-.|++. .|+++|+.+..... ....+|+++..|||.-..
T Consensus 137 eiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 137 EVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPS 179 (263)
T ss_pred eeecCCceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcc
Confidence 9999876 89999999886543 234578999999986543
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-07 Score=77.18 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=74.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
-.++.|||+|||+|.++..+++. + ..+|+++|- .+|.+.|++.++.|.+.. .++.+.+.+... +++.|+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqA----G-A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL---PEk~Dv 246 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQA----G-AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIEL---PEKVDV 246 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHh----C-cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccC---chhccE
Confidence 36799999999999999888876 2 248999996 578899999999887655 788888877643 378999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+.|-=+..- ....++.++. ..+.|||+|..+-
T Consensus 247 iISEPMG~mL~------------------NERMLEsYl~-Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 247 IISEPMGYMLV------------------NERMLESYLH-ARKWLKPNGKMFP 280 (517)
T ss_pred EEeccchhhhh------------------hHHHHHHHHH-HHhhcCCCCcccC
Confidence 99965211000 0112333333 3489999999874
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-07 Score=72.53 Aligned_cols=105 Identities=20% Similarity=0.294 Sum_probs=81.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|||+|+|+|..++..++.. ...|++.|+.|..+...+-|++.|+....+...|... . +..||+++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG-----A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~----~~~~Dl~L 147 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG-----AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S----PPAFDLLL 147 (218)
T ss_pred cccceeeecccccChHHHHHHHhh-----hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C----CcceeEEE
Confidence 368999999999999999988873 2379999999999999999999999888888888765 2 35799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
..-.|+..+ ...+++. +...|+..|..+++....+
T Consensus 148 agDlfy~~~---------------------~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 148 AGDLFYNHT---------------------EADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred eeceecCch---------------------HHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 866655332 2345555 7777888888777654443
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-06 Score=71.00 Aligned_cols=187 Identities=16% Similarity=0.265 Sum_probs=109.5
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccccCCCC--EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH
Q 025207 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLVEHHPV--LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~--~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~ 81 (256)
+.++. +++.++.+.|+.. ..-++-|+-+.+..-...++. +=+|||+|..++ .-+++.+..++...++|+++.
T Consensus 63 Dfgl~-veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci----~~llg~rq~n~~f~~teidd~ 137 (419)
T KOG2912|consen 63 DFGLS-VEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCI----YPLLGARQNNWYFLATEIDDM 137 (419)
T ss_pred ccCce-EecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhh----HHhhhchhccceeeeeecccc
Confidence 34444 8899999999988 555666666666443222222 258999999885 333444445789999999999
Q ss_pred HHHHHHHHHHHcCCcc--eEEEcchhhc-----hhhhcCCCccEEEECCCCCCCCCccc-------ccccchhhhcCCCC
Q 025207 82 AVEVTRKTLEAHNVHA--DLINTDIASG-----LEKRLAGLVDVMVVNPPYVPTPEDEV-------GREGIASAWAGGEN 147 (256)
Q Consensus 82 ~i~~a~~~~~~~~~~~--~~~~~d~~~~-----~~~~~~~~fD~Ii~npP~~~~~~~~~-------~~~~~~~~~~~~~~ 147 (256)
.+..|+.|+.+|++.. .+++....+. .....+..||+++|||||+....+.. ....+.....|+..
T Consensus 138 s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~ 217 (419)
T KOG2912|consen 138 SFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQ 217 (419)
T ss_pred ccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCchhhchhhhccccccCCCCCCcccccccchh
Confidence 9999999999998765 3333322221 11112356999999999998633211 11222222233211
Q ss_pred ------cH-HHHHHHHHHHhhccccCeEEEEEEeC-CCCHHHHHHHHHHcCCcEEEEE
Q 025207 148 ------GR-AVIDKILPSADKLLSKRGWLYLVTLT-ANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 148 ------~~-~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|. .+..+++.... .|+.+=+.+-+..+ ......+...+.+.|.....+.
T Consensus 218 e~v~eggev~fvnRiitds~-~lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~kv~it 274 (419)
T KOG2912|consen 218 EFVSEGGEVSFVNRIITDSF-VLRKRIRWYTCMLGKKSSLKPLISKLREQGVTKVKIT 274 (419)
T ss_pred HHHhhccHHHHHHHHHHHHH-HhhhcceEEeeecccccccHHHHHHHHHcCCceEEEE
Confidence 11 12233333322 24555455543332 2345677888888886544433
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3e-06 Score=70.68 Aligned_cols=95 Identities=7% Similarity=-0.097 Sum_probs=69.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcc---eEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHA---DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~---~~~~~d~~~~~~~~~~~~ 115 (256)
+.+++||=+|-|.|..+.++.+. +. +|+.+||++++++.+++.+... ++++ +++. . ..+...++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-----~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~---~~~~~~~~ 139 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-----DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--Q---LLDLDIKK 139 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-----CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--h---hhhccCCc
Confidence 57899999999999987666654 44 9999999999999999965543 2222 3433 1 11212368
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
||+||++..| -..+.+.+.+.|+|||+++.-
T Consensus 140 fDVIIvDs~~--------------------------~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 140 YDLIICLQEP--------------------------DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCEEEEcCCC--------------------------ChHHHHHHHHhcCCCcEEEEC
Confidence 9999998432 246678899999999999983
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=69.09 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=76.2
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhc
Q 025207 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASG 107 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~ 107 (256)
..+.+.+..+...++.+|||+||++|.++..+.+.. .+.+.|+|+|+.+.. ..+. ..+++|+.+.
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~---~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~ 75 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG---GPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNP 75 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST---TTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEE
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecc---cccceEEEEeccccc-----------cccceeeeecccchh
Confidence 344555443333367999999999999987777653 245799999998871 1111 3333333221
Q ss_pred -----hhhhc---CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025207 108 -----LEKRL---AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 108 -----~~~~~---~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
..... .+.+|+|+++.-........ .... .........+..+...|++||.+++-.......
T Consensus 76 ~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~-~d~~---------~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 76 ENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRN-IDEF---------ISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp EHSHHGGGSHGTTTCSESEEEE-------SSHH-SSHH---------HHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred hHHHhhhhhccccccCcceeccccccCCCCchh-hHHH---------HHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 12211 26899999976221111100 0000 011223344556678899999888755443333
Q ss_pred HHHHHHHHHcCCcEEEEEec
Q 025207 180 SQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 180 ~~~~~~~~~~g~~~~~~~~~ 199 (256)
.++...+....-.+..+.+.
T Consensus 146 ~~~~~~l~~~F~~v~~~Kp~ 165 (181)
T PF01728_consen 146 EELIYLLKRCFSKVKIVKPP 165 (181)
T ss_dssp HHHHHHHHHHHHHEEEEE-T
T ss_pred HHHHHHHHhCCeEEEEEECc
Confidence 46666666532233334433
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.8e-06 Score=62.06 Aligned_cols=94 Identities=27% Similarity=0.277 Sum_probs=62.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025207 72 QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 72 ~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
+|+|+||.+++++.+++++...++.. ++++.+-.....-..++++|+++.|.-|.+-.+.+... ..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T------------~~ 68 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITT------------KP 68 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--------------H
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCc------------Cc
Confidence 58999999999999999999988754 67776655543222224899999999888766544221 12
Q ss_pred HHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 150 AVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+.....++.+.++|+|||++.++.-...
T Consensus 69 ~TTl~Al~~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 69 ETTLKALEAALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE--ST
T ss_pred HHHHHHHHHHHHhhccCCEEEEEEeCCC
Confidence 2356778999999999999998775433
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=66.80 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=96.7
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-
Q 025207 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA- 97 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~- 97 (256)
...|..+.++-.++..... -.+.+|||+|.|--++ ...++...-|...|..+|-++++++..++....|-...
T Consensus 9 ciwpseeala~~~l~~~n~---~rg~~ilelgggft~l---aglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ 82 (201)
T KOG3201|consen 9 CIWPSEEALAWTILRDPNK---IRGRRILELGGGFTGL---AGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL 82 (201)
T ss_pred EecccHHHHHHHHHhchhH---HhHHHHHHhcCchhhh---hhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc
Confidence 3455567777777766543 2578999999885443 22334444567789999999999999998887773321
Q ss_pred ---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 98 ---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 98 ---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+...+...........+||+|+|-- +.|+ -+...++++.+..+|+|.|..++..|
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaAD----------------ClFf-----dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAAD----------------CLFF-----DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEecc----------------chhH-----HHHHHHHHHHHHHHhCcccceeEecC
Confidence 33344443333333346899999832 2221 12367889999999999999888776
Q ss_pred CCC-CHHHHHHHHHHcCCcEE
Q 025207 175 TAN-DPSQICLQMMEKGYAAR 194 (256)
Q Consensus 175 ~~~-~~~~~~~~~~~~g~~~~ 194 (256)
... ......+.....||...
T Consensus 142 RRg~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 142 RRGQSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred cccchHHHHHHHHHhceeEEE
Confidence 332 34455666666676543
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-06 Score=68.14 Aligned_cols=134 Identities=19% Similarity=0.132 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhhccccc-CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc
Q 025207 24 SFALVDALLADRINLVE-HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~-~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~ 102 (256)
+..+++|+.+....... ....++|||||-+....+.. .+-..|+.||+++.. ..+.+.
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~-------~~~fdvt~IDLns~~--------------~~I~qq 90 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST-------SGWFDVTRIDLNSQH--------------PGILQQ 90 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccc-------cCceeeEEeecCCCC--------------CCceee
Confidence 78889998887643221 13479999999977643221 223469999998721 157777
Q ss_pred chhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE-----EEEEEeCC
Q 025207 103 DIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW-----LYLVTLTA 176 (256)
Q Consensus 103 d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~~~~~~~ 176 (256)
|+.+...+ ...++||+|.+.......|++. -...++..+++.|+|+|. ++++.|..
T Consensus 91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~------------------~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLSLVLNFVPDPK------------------QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred ccccCCCCCCcccceeEEEEEEEEeeCCCHH------------------HHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 87776332 3467899999866555544432 256889999999999999 99988643
Q ss_pred C-------CHHHHHHHHHHcCCcEEEE
Q 025207 177 N-------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 177 ~-------~~~~~~~~~~~~g~~~~~~ 196 (256)
. ..+.+..+|...||.....
T Consensus 153 Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 153 CVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred HhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 2 3457788999999986544
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.39 E-value=5e-07 Score=65.12 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=44.0
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
||+|+..|..+..+++.+.... ..+++++|..+. .+.+++.++..+.. .+++.++..+.+..+..+++|+|+.+-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~-~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNG-RGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ---------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Cccccccccccccccccccccc-cCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 6899999999888887765321 147999999995 33344444434433 3899999988776654579999999643
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
. ........++.+.+.|+|||++++
T Consensus 79 H----------------------~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 79 H----------------------SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ------------------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred C----------------------CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 2 123356678889999999999887
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.5e-05 Score=60.69 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=95.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+.++.|+||--+.++.++.+. .+-..+++.|+++..++.|.+++..+++.. ++..+|....+.. +..+|.|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~----~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~--~d~~d~i 89 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN----NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL--EDEIDVI 89 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc----CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc--cCCcCEE
Confidence 4556999999999998888776 666789999999999999999999988764 6666776554432 3479998
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
+.- |+.| .....++++..+.|+.--++++ .+.....+++.++...+|..+.....
T Consensus 90 vIA----------------------GMGG-~lI~~ILee~~~~l~~~~rlIL--QPn~~~~~LR~~L~~~~~~I~~E~il 144 (226)
T COG2384 90 VIA----------------------GMGG-TLIREILEEGKEKLKGVERLIL--QPNIHTYELREWLSANSYEIKAETIL 144 (226)
T ss_pred EEe----------------------CCcH-HHHHHHHHHhhhhhcCcceEEE--CCCCCHHHHHHHHHhCCceeeeeeee
Confidence 762 2322 3466888888887776656666 44556889999999999987554433
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-06 Score=69.36 Aligned_cols=131 Identities=17% Similarity=0.258 Sum_probs=88.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-------Ccc-eEEEcchhhchhhhc-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-------VHA-DLINTDIASGLEKRL- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-------~~~-~~~~~d~~~~~~~~~- 112 (256)
....+.|||||-|.+++.++.. +|+..+.|.||-...-+..+++|.... ..+ .+...+....++.++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~----fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPK----FPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE 135 (249)
T ss_pred ccceEEeeccCccchhhhcccc----CccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh
Confidence 4578999999999988777766 999999999999999999999888764 232 677777777766543
Q ss_pred CCCc--cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 113 AGLV--DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 113 ~~~f--D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
.+.. +..+..-|.+..... . .......++.+..-+|++||.++.++............+++..
T Consensus 136 kgqLskmff~fpdpHfk~~kh-------k--------~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKH-------K--------WRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred hcccccceeecCChhHhhhhc-------c--------ceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 2332 222222233211110 1 1112356688888899999999998765555555566666655
Q ss_pred C
Q 025207 191 Y 191 (256)
Q Consensus 191 ~ 191 (256)
+
T Consensus 201 l 201 (249)
T KOG3115|consen 201 L 201 (249)
T ss_pred H
Confidence 4
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-05 Score=72.02 Aligned_cols=150 Identities=20% Similarity=0.273 Sum_probs=88.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhhcCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++..|.|+.||+|.+.+...+.+........++|.+..+.++..+..|+..++... ....+|-...........||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 56799999999999987655543210112579999999999999999988776532 333344332111112356999
Q ss_pred EEECCCCCCCCCcc-cc-cccchhhhcCCC---CcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----CHHHHHHHHHH
Q 025207 119 MVVNPPYVPTPEDE-VG-REGIASAWAGGE---NGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----DPSQICLQMME 188 (256)
Q Consensus 119 Ii~npP~~~~~~~~-~~-~~~~~~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~ 188 (256)
|++||||...-... .. ......+|..+. ... .=..++..++..|++||+..++.+..- ....++..+..
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-~~~afi~h~~~~L~~gG~~aiI~~~gvl~~~~~e~~ir~~lL~ 375 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSK-ADLAFVLHALYVLGQEGTAAIVCFPGILYREGKEQTIRKYLVD 375 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCch-hhHHHHHHHHHhcCCCCeEEEEecCCcccCCCchHHHHHHHHH
Confidence 99999996532111 00 111122222110 111 123556667778999999887765331 23356666666
Q ss_pred cCCc
Q 025207 189 KGYA 192 (256)
Q Consensus 189 ~g~~ 192 (256)
++..
T Consensus 376 ~~~~ 379 (501)
T TIGR00497 376 QNFV 379 (501)
T ss_pred cCcE
Confidence 6654
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-05 Score=67.92 Aligned_cols=150 Identities=16% Similarity=0.129 Sum_probs=97.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchh-------hhc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLE-------KRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~-------~~~ 112 (256)
+++.+|||+|+..|.-++.+.+.+........|++=|.++..+......+......+ .+...|+..... +..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 699999999999999998888877543223489999999999998888775544332 333333332211 112
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCC-Cc-HHHHHHHHHHHhhccccCeEEEEEEeCCCC---HHHHHHHHH
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGE-NG-RAVIDKILPSADKLLSKRGWLYLVTLTAND---PSQICLQMM 187 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~ 187 (256)
...||-|+|+-|-............-...|.... .+ ......++.+..++||+||+++.++++.+. ...+.++++
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~ 313 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQ 313 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHH
Confidence 2569999999998765332211111111132221 11 224568899999999999999999987653 335566666
Q ss_pred HcC
Q 025207 188 EKG 190 (256)
Q Consensus 188 ~~g 190 (256)
..+
T Consensus 314 ~~~ 316 (375)
T KOG2198|consen 314 KVG 316 (375)
T ss_pred Hhc
Confidence 655
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=71.02 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+.+.+.. .++..|||+|+|.|.++..+++.+ .+++++|+++..++..++.+. ..-..+++.+|+
T Consensus 16 ~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~------~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~ 85 (262)
T PF00398_consen 16 PNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG------KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS------SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-T
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc------CcceeecCcHhHHHHHHHHhh-hcccceeeecch
Confidence 5566777776642 478999999999999999998872 489999999999999888664 222348999999
Q ss_pred hhchhhh-cCCCccEEEECCCCC
Q 025207 105 ASGLEKR-LAGLVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~~-~~~~fD~Ii~npP~~ 126 (256)
.+..... .......|++|.||.
T Consensus 86 l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEETGT
T ss_pred hccccHHhhcCCceEEEEEeccc
Confidence 8874431 234667999999984
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=67.72 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=59.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+.+.|+|+|+|.++.-++... -+|+++|.+|...+.|.+|+..+|..+ +++.+|+.+. .+ +..|+|+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y--~f--e~ADvvi 101 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAA------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY--DF--ENADVVI 101 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhh------ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc--cc--cccceeH
Confidence 34889999999999988777762 289999999999999999998888777 9999999887 33 5789999
Q ss_pred E
Q 025207 121 V 121 (256)
Q Consensus 121 ~ 121 (256)
|
T Consensus 102 c 102 (252)
T COG4076 102 C 102 (252)
T ss_pred H
Confidence 9
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.3e-05 Score=66.25 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=85.5
Q ss_pred HHHHHHHhhc-ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025207 27 LVDALLADRI-NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 27 l~~~l~~~~~-~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.+..++.++. .++...+.+|||+|||.|..+.++...... -.+++++|.|+.|++.++..+....... .....+.
T Consensus 17 ~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~---~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~ 93 (274)
T PF09243_consen 17 AVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPS---LKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVL 93 (274)
T ss_pred HHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcC---ceeeeeecCCHHHHHHHHHHHhcccccccchhhhhh
Confidence 3344455553 233457789999999999987777666431 2379999999999999888665332111 1111111
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH----H
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP----S 180 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~ 180 (256)
.....+. ...|+|++.......++ .....+++.+.+.+++ .+++++++.... .
T Consensus 94 ~~~~~~~--~~~DLvi~s~~L~EL~~-------------------~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~ 150 (274)
T PF09243_consen 94 YRDFLPF--PPDDLVIASYVLNELPS-------------------AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIA 150 (274)
T ss_pred hcccccC--CCCcEEEEehhhhcCCc-------------------hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHH
Confidence 1111111 23499999655443332 1256778888777766 888888765432 3
Q ss_pred HHHHHHHHcCCcE
Q 025207 181 QICLQMMEKGYAA 193 (256)
Q Consensus 181 ~~~~~~~~~g~~~ 193 (256)
++++.+.+.|+.+
T Consensus 151 ~aR~~l~~~~~~v 163 (274)
T PF09243_consen 151 EARDQLLEKGAHV 163 (274)
T ss_pred HHHHHHhhCCCce
Confidence 5666666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.4e-05 Score=60.52 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=82.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch-----hhh-cCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL-----EKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~-----~~~-~~~ 114 (256)
.++..|+|+|+..|.++..+++.++ ++..|+|+|+.|-..-. ...++++|+.... ... ...
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~---~~~~ivavDi~p~~~~~----------~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLG---AGGKIVAVDILPMKPIP----------GVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhC---CCCcEEEEECcccccCC----------CceEEeeeccCccHHHHHHHHcCCC
Confidence 5789999999999999998888865 34469999998743211 1256666665442 222 234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
.+|+|++++.= +..... . .+...........++.+..+|++||.+++-.......+++...++++.
T Consensus 111 ~~DvV~sD~ap-~~~g~~----~-----~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F 176 (205)
T COG0293 111 PVDVVLSDMAP-NTSGNR----S-----VDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLF 176 (205)
T ss_pred CcceEEecCCC-CcCCCc----c-----ccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhh
Confidence 47999997521 111100 0 011112223455677788899999999997777777788888887653
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-06 Score=69.85 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=75.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+....++|||||-|.+.. .+..++-+ +++-+|.|..|++.++..- .+++......+|=... ++.+.++|+|+
T Consensus 71 k~fp~a~diGcs~G~v~r----hl~~e~ve-kli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~L--df~ens~DLii 142 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKR----HLRGEGVE-KLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFL--DFKENSVDLII 142 (325)
T ss_pred hhCcceeecccchhhhhH----HHHhcchh-heeeeecchHHHHHhhccC-CCceEEEEEecchhcc--cccccchhhhh
Confidence 567899999999999643 33322333 7999999999999987642 1333335555553332 45678999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
+..-.+..++ +...+.+|+..|||.|.++-+..+.+...+
T Consensus 143 sSlslHW~Nd---------------------LPg~m~~ck~~lKPDg~FiasmlggdTLyE 182 (325)
T KOG2940|consen 143 SSLSLHWTND---------------------LPGSMIQCKLALKPDGLFIASMLGGDTLYE 182 (325)
T ss_pred hhhhhhhhcc---------------------CchHHHHHHHhcCCCccchhHHhccccHHH
Confidence 8543322221 456677899999999998876655554433
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.4e-06 Score=62.89 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=48.6
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhh
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIAS 106 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~ 106 (256)
.|+|+|||.|.+++.++.. +++++++++|.++.+++.+++++..++... .+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~----~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK----GAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHh----CCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999998888776 677799999999999999999999888654 666655544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-05 Score=60.60 Aligned_cols=78 Identities=24% Similarity=0.407 Sum_probs=58.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--Ccc--eEEEcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHA--DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~--~~~~~d~~~~~~~~~~~~f 116 (256)
.+..+|+|+|||-|.++..++..+....++.+|+|+|.++..++.+.+..+..+ +.. .+..++..+... ....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS---SDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc---cCCC
Confidence 578999999999999999999866554578899999999999999999888766 322 444444433211 3456
Q ss_pred cEEEE
Q 025207 117 DVMVV 121 (256)
Q Consensus 117 D~Ii~ 121 (256)
++++.
T Consensus 101 ~~~vg 105 (141)
T PF13679_consen 101 DILVG 105 (141)
T ss_pred eEEEE
Confidence 77766
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.1e-06 Score=75.44 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=75.0
Q ss_pred ccCCccccCCchHHHHHHHHHhhccc-ccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-----HHHHHH
Q 025207 13 SHPEVYEPCDDSFALVDALLADRINL-VEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-----YAVEVT 86 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~-~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~-----~~i~~a 86 (256)
+..+--..-......++.|.+.+..+ ..+.-..+||+|||+|.++..+... + |+.+-+.+ ..++.|
T Consensus 87 FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r------~--V~t~s~a~~d~~~~qvqfa 158 (506)
T PF03141_consen 87 FPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER------N--VTTMSFAPNDEHEAQVQFA 158 (506)
T ss_pred eCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC------C--ceEEEcccccCCchhhhhh
Confidence 44444343444666777776666432 1234478999999999997555443 3 44433333 334443
Q ss_pred HHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 87 RKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 87 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
.+ .|+.. +.+-+.....+++...||+|-|.-.... |... . ..++-++.++|+||
T Consensus 159 le----RGvpa--~~~~~~s~rLPfp~~~fDmvHcsrc~i~--------------W~~~-~-----g~~l~evdRvLRpG 212 (506)
T PF03141_consen 159 LE----RGVPA--MIGVLGSQRLPFPSNAFDMVHCSRCLIP--------------WHPN-D-----GFLLFEVDRVLRPG 212 (506)
T ss_pred hh----cCcch--hhhhhccccccCCccchhhhhccccccc--------------chhc-c-----cceeehhhhhhccC
Confidence 32 35432 2222222334667789999987322111 1110 0 23577889999999
Q ss_pred eEEEEEEeCCC
Q 025207 167 GWLYLVTLTAN 177 (256)
Q Consensus 167 G~l~~~~~~~~ 177 (256)
|.++++.+...
T Consensus 213 Gyfv~S~ppv~ 223 (506)
T PF03141_consen 213 GYFVLSGPPVY 223 (506)
T ss_pred ceEEecCCccc
Confidence 99999876543
|
; GO: 0008168 methyltransferase activity |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00037 Score=55.21 Aligned_cols=176 Identities=18% Similarity=0.212 Sum_probs=113.8
Q ss_pred ccceeeeccCCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH
Q 025207 6 AQIRLVSSHPEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84 (256)
Q Consensus 6 ~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~ 84 (256)
|+=+.+.+....|+-+.. ...|+..++.=+..++-+++.+||=+|..+|.-.-.++..+ +...++|+|.++....
T Consensus 39 YGE~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv----~~G~iYaVEfs~R~~r 114 (231)
T COG1889 39 YGERIIKVEGEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIV----GEGRIYAVEFSPRPMR 114 (231)
T ss_pred cCceeEEecCcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhcc----CCCcEEEEEecchhHH
Confidence 333445555555666655 78888888888887777899999999999999766666653 3568999999999887
Q ss_pred HHHHHHHHcCCcceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 85 VTRKTLEAHNVHADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
..-...... -+.-.+.+|+..+.. ...=+..|+|+.+-..- +-.+-+..++...|
T Consensus 115 eLl~~a~~R-~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp-----------------------~Qa~I~~~Na~~FL 170 (231)
T COG1889 115 ELLDVAEKR-PNIIPILEDARKPEKYRHLVEKVDVIYQDVAQP-----------------------NQAEILADNAEFFL 170 (231)
T ss_pred HHHHHHHhC-CCceeeecccCCcHHhhhhcccccEEEEecCCc-----------------------hHHHHHHHHHHHhc
Confidence 665544321 122567778766532 12235699999863210 01345567888999
Q ss_pred ccCeEEEEEEeCCC-----CHH----HHHHHHHHcCCcEEEEE-ecCCCCccEEEE
Q 025207 164 SKRGWLYLVTLTAN-----DPS----QICLQMMEKGYAARIVV-QRSTEEENLHII 209 (256)
Q Consensus 164 kpgG~l~~~~~~~~-----~~~----~~~~~~~~~g~~~~~~~-~~~~~~~~~~l~ 209 (256)
|+||.++++....+ .++ +....+++.+|+...+. ......++..++
T Consensus 171 k~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~DH~~i~ 226 (231)
T COG1889 171 KKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKDHALIV 226 (231)
T ss_pred ccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcccceEEEE
Confidence 99998777553221 222 33456667788765433 334444555444
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.9e-05 Score=63.12 Aligned_cols=146 Identities=13% Similarity=0.151 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhhcccc-----cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH----cC
Q 025207 24 SFALVDALLADRINLV-----EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA----HN 94 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~-----~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~----~~ 94 (256)
.....+.|++.+..+. .....+||-+|||.|.++.+++.. +..+.|.|.|--|+=...-.+.. +.
T Consensus 33 R~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~Mll~s~fiLn~~~~~~~ 106 (270)
T PF07942_consen 33 RDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFMLLASNFILNHCSQPNQ 106 (270)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHHHHHHHHHHcccCCCCc
Confidence 4555666666665432 245689999999999998888876 56899999999985432221110 00
Q ss_pred C------------------------c-------------ceEEEcchhhchhhh-cCCCccEEEECCCCCCCCCcccccc
Q 025207 95 V------------------------H-------------ADLINTDIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGRE 136 (256)
Q Consensus 95 ~------------------------~-------------~~~~~~d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~~ 136 (256)
. + ..+..||+.+.-.+. ..++||+|++. |+...
T Consensus 107 ~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFIDT------- 177 (270)
T PF07942_consen 107 FTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFIDT------- 177 (270)
T ss_pred EEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEeec-------
Confidence 0 0 033444444432221 12567777764 33211
Q ss_pred cchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe----CCC-----------CHHHHHHHHHHcCCcEEEE
Q 025207 137 GIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL----TAN-----------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~-----------~~~~~~~~~~~~g~~~~~~ 196 (256)
...+..+++.+.++|||||.-+=+.| ... ..+++...+...||+....
T Consensus 178 ------------A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 178 ------------AENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred ------------hHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 22367889999999999996553221 111 2468999999999987543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.3e-05 Score=65.09 Aligned_cols=165 Identities=12% Similarity=0.111 Sum_probs=91.3
Q ss_pred HHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---------
Q 025207 26 ALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--------- 93 (256)
Q Consensus 26 ~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--------- 93 (256)
.++.+.+..+-... ..++.++||+|||.-...+ ..++ ++. -.|+..|..+...+..++-++..
T Consensus 37 ~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~--lsa~--~~f-~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~ 111 (256)
T PF01234_consen 37 EILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQL--LSAC--EWF-EEIVLSDYSEQNREELEKWLRKEGAFDWSPFW 111 (256)
T ss_dssp HHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGG--TTGG--GTE-EEEEEEESSHHHHHHHHHHHTT-TS--THHHH
T ss_pred hhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhh--hhHH--Hhh-cceEEeeccHhhHHHHHHHHCCCCCCCccHHH
Confidence 35555554443222 2367899999999865311 1111 122 26999999999887665533211
Q ss_pred -------CC-----------c--c-eEEEcchhhchhhh----cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025207 94 -------NV-----------H--A-DLINTDIASGLEKR----LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 94 -------~~-----------~--~-~~~~~d~~~~~~~~----~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
|- . . .++..|+.+..+-. .+.+||+|++.... ......
T Consensus 112 ~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcL-----------------E~a~~d 174 (256)
T PF01234_consen 112 KYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCL-----------------ESACKD 174 (256)
T ss_dssp HHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSH-----------------HHH-SS
T ss_pred HHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHH-----------------HHHcCC
Confidence 10 0 1 46667776543211 12358888873221 111123
Q ss_pred HHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHHHHHHHHcCCcEEEEEe--cCCCCccEEEEEE
Q 025207 149 RAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQICLQMMEKGYAARIVVQ--RSTEEENLHIIKF 211 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~l~~~ 211 (256)
.+.+...++++.++|||||.++++..-.. ..+.+.+.+++.|+.+..... .....+.++++.+
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a 254 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVA 254 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEE
Confidence 45688999999999999999998663211 356899999999998777664 2223344555544
Q ss_pred E
Q 025207 212 W 212 (256)
Q Consensus 212 ~ 212 (256)
+
T Consensus 255 ~ 255 (256)
T PF01234_consen 255 R 255 (256)
T ss_dssp E
T ss_pred e
Confidence 3
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-05 Score=64.51 Aligned_cols=95 Identities=15% Similarity=0.246 Sum_probs=63.8
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++++|..+.+..+.++++|+|+.+|||...-..... . . ..+....+....++.++.++|||||.+++.. ...
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~-~----~-~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~-~~~ 75 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQG-R----T-IAGDKTDEWLQPACNEMYRVLKKDALMVSFY-GWN 75 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCC-c----c-cccccHHHHHHHHHHHHHHHcCCCCEEEEEe-ccc
Confidence 5788999998888788999999999999741110000 0 0 0111122346788999999999999888643 344
Q ss_pred CHHHHHHHHHHcCCcEE--EEEec
Q 025207 178 DPSQICLQMMEKGYAAR--IVVQR 199 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~--~~~~~ 199 (256)
....+...+++.||... .++.+
T Consensus 76 ~~~~~~~al~~~GF~l~~~IiW~K 99 (227)
T PRK13699 76 RVDRFMAAWKNAGFSVVGHLVFTK 99 (227)
T ss_pred cHHHHHHHHHHCCCEEeeEEEEEC
Confidence 45566778888898754 35543
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.8e-05 Score=62.74 Aligned_cols=125 Identities=21% Similarity=0.221 Sum_probs=69.2
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHH-
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEA- 92 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~- 92 (256)
+.+|-.. ....+..+++.+. ..++...+|+|||.|...+.++... ++ ..+|||+.+...+.|+.....
T Consensus 20 ~~~YGEi--~~~~~~~il~~~~---l~~~dvF~DlGSG~G~~v~~aal~~-----~~~~~~GIEi~~~~~~~a~~~~~~~ 89 (205)
T PF08123_consen 20 SETYGEI--SPEFVSKILDELN---LTPDDVFYDLGSGVGNVVFQAALQT-----GCKKSVGIEILPELHDLAEELLEEL 89 (205)
T ss_dssp CCCGGGC--HHHHHHHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH-------SEEEEEE-SHHHHHHHHHHHHHH
T ss_pred Ccceeec--CHHHHHHHHHHhC---CCCCCEEEECCCCCCHHHHHHHHHc-----CCcEEEEEEechHHHHHHHHHHHHH
Confidence 3344443 3444455555543 3578999999999999988777653 33 499999999998888664432
Q ss_pred ------cCCc---ceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhc
Q 025207 93 ------HNVH---ADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKL 162 (256)
Q Consensus 93 ------~~~~---~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (256)
.+.. .++..+|+.+... ...-...|+|++|---+ +.. +...+......
T Consensus 90 ~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F---------------------~~~-l~~~L~~~~~~ 147 (205)
T PF08123_consen 90 KKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF---------------------DPD-LNLALAELLLE 147 (205)
T ss_dssp HHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT----------------------HH-HHHHHHHHHTT
T ss_pred HHHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEecccc---------------------CHH-HHHHHHHHHhc
Confidence 3332 2677888876421 11114579999973211 011 33344556667
Q ss_pred cccCeEEEE
Q 025207 163 LSKRGWLYL 171 (256)
Q Consensus 163 LkpgG~l~~ 171 (256)
||+|-+++.
T Consensus 148 lk~G~~IIs 156 (205)
T PF08123_consen 148 LKPGARIIS 156 (205)
T ss_dssp S-TT-EEEE
T ss_pred CCCCCEEEE
Confidence 898888765
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.9e-05 Score=59.33 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=80.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-chhhchh------hhcC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DIASGLE------KRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-d~~~~~~------~~~~ 113 (256)
.|+.+|||+||..|.++.-+.+.. .|+..|.|+|+-.-.- -.|. .++.+ |+.+... ....
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~---~p~g~v~gVDllh~~p--------~~Ga--~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRV---NPNGMVLGVDLLHIEP--------PEGA--TIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhh---CCCceEEEEeeeeccC--------CCCc--ccccccccCCHHHHHHHHHhCCC
Confidence 588999999999999987766664 4888999999853210 0111 33333 4443321 1123
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
-..|+|+++..-..+.. ... ++....+.-..++......++|+|.++.-.........+.+.|.+..-.+
T Consensus 135 r~VdvVlSDMapnaTGv-r~~---------Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~V 204 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGV-RIR---------DHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNV 204 (232)
T ss_pred CcccEEEeccCCCCcCc-chh---------hHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhc
Confidence 56899999753211111 000 00001112333455556778999999987777777778888887764344
Q ss_pred EEEEec
Q 025207 194 RIVVQR 199 (256)
Q Consensus 194 ~~~~~~ 199 (256)
..+.+.
T Consensus 205 k~vKP~ 210 (232)
T KOG4589|consen 205 KKVKPD 210 (232)
T ss_pred EeeCCc
Confidence 444443
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=58.47 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=75.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-++.+||++|-|-|.+. ..+.++.|. .-+-+|.+|+.++.+++..-...-+..+..+...+.+....++.||-|+
T Consensus 100 tkggrvLnVGFGMgIid----T~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIID----TFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHH----HHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence 47899999999999964 444444554 6778899999999887753322222367778888888777788999998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
-+- |.. .-+....+.+.+.++|||+|++-+
T Consensus 175 yDT-y~e--------------------~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 175 YDT-YSE--------------------LYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred eec-hhh--------------------HHHHHHHHHHHHhhhcCCCceEEE
Confidence 741 100 012245667788999999999887
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.001 Score=54.22 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=92.1
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
...|.+| -.+-...+++.+.- ..+++.|||+|+.||.|+-.+.+. + ...|+|+|..-..+.-- +. +.
T Consensus 56 ~~~yVSR--G~~KL~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq~----g-Ak~VyavDVG~~Ql~~k---LR-~d 122 (245)
T COG1189 56 EQPYVSR--GGLKLEKALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQR----G-AKHVYAVDVGYGQLHWK---LR-ND 122 (245)
T ss_pred CcCcccc--HHHHHHHHHHhcCc--CCCCCEEEEecCCCccHHHHHHHc----C-CcEEEEEEccCCccCHh---Hh-cC
Confidence 3444454 23333445555542 358899999999999999887775 2 24899999876544321 11 11
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
... .+...|+....++...+..|+++|+--|. .+..++..+..+++++|.++...
T Consensus 123 ~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI------------------------SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 123 PRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI------------------------SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred CcEEEEecCChhhCCHHHcccCCCeEEEEeehh------------------------hHHHHHHHHHHhcCCCceEEEEe
Confidence 222 34445555555444456889999976553 26788899999999998877644
Q ss_pred e-CCC--------------------CHHHHHHHHHHcCCcEEEEE
Q 025207 174 L-TAN--------------------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 174 ~-~~~--------------------~~~~~~~~~~~~g~~~~~~~ 197 (256)
. .+. -...+.+++...||....+.
T Consensus 179 KPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 179 KPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred cchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 2 111 12356667777788776544
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00052 Score=58.15 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=89.4
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+|+|+.||.|.+...+... +. -.+.++|+++.+++..+.|... .++.+|+.+.........+|+++..||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~----G~-~~v~a~e~~~~a~~~~~~N~~~-----~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA----GF-EIVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHc----CC-EEEEEEeCCHHHHHHHHHhCCC-----CCccCccccCchhhcCCCCCEEEeCCC
Confidence 6999999999987766654 22 2589999999999988887632 355667666543211357999999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------CHHHHHHHHHHcCCcEEEE
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------~~~~~~~~~~~~g~~~~~~ 196 (256)
....+....... ..+.++ ..+..+++ +.+.++|. +++++.... ....+.+.+++.||.....
T Consensus 72 Cq~fS~ag~~~~------~~d~r~-~L~~~~~~-~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 72 CQPFSIAGKRKG------FEDTRG-TLFFEIIR-ILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred ChhhhHHhhcCC------CCCchH-HHHHHHHH-HHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEE
Confidence 876555321100 011111 12334443 33445776 333233221 2346777888889876443
Q ss_pred Ee------cCCCCccEEEEEEEec
Q 025207 197 VQ------RSTEEENLHIIKFWRD 214 (256)
Q Consensus 197 ~~------~~~~~~~~~l~~~~~~ 214 (256)
.. ..+...+++++...++
T Consensus 142 ~l~a~~~GvPQ~R~R~~~ia~~~~ 165 (275)
T cd00315 142 LLNASDYGVPQNRERVFIIGIRKD 165 (275)
T ss_pred EEEHHHcCCCCCCcEEEEEEEeCC
Confidence 32 2345677777766554
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00053 Score=59.04 Aligned_cols=132 Identities=20% Similarity=0.288 Sum_probs=89.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHc-----CCcc---eEEEcchhhchhhh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAH-----NVHA---DLINTDIASGLEKR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~-----~~~~---~~~~~d~~~~~~~~ 111 (256)
+.-.+||-+|-|.|.-+.++.+ +| -.+|+-+|++|+|++.++++-... ...+ .++..|+.+++..-
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-----yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-----YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-----CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh
Confidence 3558999999999996555444 56 358999999999999999654332 1222 78899999987653
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-CCCH---HHHHHHHH
Q 025207 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-ANDP---SQICLQMM 187 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~---~~~~~~~~ 187 (256)
...||+||.+.|=-..+.. +.-....+-..+.+.|+++|++++-..+ +... -.+.+-++
T Consensus 363 -~~~fD~vIVDl~DP~tps~----------------~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik 425 (508)
T COG4262 363 -ADMFDVVIVDLPDPSTPSI----------------GRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIK 425 (508)
T ss_pred -cccccEEEEeCCCCCCcch----------------hhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHH
Confidence 4589999998763222221 1122445666778899999999884321 1111 24567778
Q ss_pred HcCCcEE
Q 025207 188 EKGYAAR 194 (256)
Q Consensus 188 ~~g~~~~ 194 (256)
+.|+...
T Consensus 426 ~AG~~~~ 432 (508)
T COG4262 426 SAGYRVW 432 (508)
T ss_pred hCcceee
Confidence 8887653
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00017 Score=63.53 Aligned_cols=103 Identities=24% Similarity=0.277 Sum_probs=75.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhhcCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.+.+|||.-+|+|.=++-.++.+.. ...|++-|+|+++++.+++|++.|++.. .+.+.|+...+. .....||+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~---~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAG---VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SS---ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcCC---CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCE
Confidence 4579999999999988877777431 2479999999999999999999999876 677888877663 23578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|=.+| |.. ...++..+.+.++.||.+.+..
T Consensus 125 IDlDP-fGS------------------------p~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 125 IDLDP-FGS------------------------PAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEE---SS--------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC-CCC------------------------ccHhHHHHHHHhhcCCEEEEec
Confidence 97764 321 3577888889999999999955
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.3e-05 Score=62.21 Aligned_cols=74 Identities=26% Similarity=0.346 Sum_probs=55.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|+|+|||.--+++..... .+++.++|+||+..+++.....+...+++.++...|+....+ ....|+.+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~----~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~---~~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPE----APGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP---KEPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTS----STT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT---TSEESEEE
T ss_pred CCCchhhhhhccCCceehhhccc----CCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC---CCCcchhh
Confidence 35899999999998876443322 567899999999999999999999889888888888877644 36789998
Q ss_pred E
Q 025207 121 V 121 (256)
Q Consensus 121 ~ 121 (256)
.
T Consensus 177 l 177 (251)
T PF07091_consen 177 L 177 (251)
T ss_dssp E
T ss_pred H
Confidence 7
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00017 Score=64.24 Aligned_cols=152 Identities=14% Similarity=0.091 Sum_probs=94.4
Q ss_pred ccccceeeeccCCccccCC-c-hHHHHHHHHHhhccc--ccCCCC-EEEEecccccHHHHHHHHHhcccCCCceEEEEeC
Q 025207 4 RTAQIRLVSSHPEVYEPCD-D-SFALVDALLADRINL--VEHHPV-LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI 78 (256)
Q Consensus 4 ~~~~~~~~~~~~~~~~p~~-~-~~~l~~~l~~~~~~~--~~~~~~-~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~ 78 (256)
..-.+.+...-..+|.||- + .+.+.+++.-. ..+ ...+-. +++.+|||+..+...+.+. .--.|+.+|+
T Consensus 6 ~~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~-~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~-----G~~dI~~iD~ 79 (482)
T KOG2352|consen 6 EQLSFGSVVYWDKRFQPRGSDPFEWYGALLSLS-GSIMKYLSPSDFKILQLGCGNSELSEHLYKN-----GFEDITNIDS 79 (482)
T ss_pred cccccCcchhhhhhccccCCChHHHHHHHHHHH-HHHHHhhchhhceeEeecCCCCHHHHHHHhc-----CCCCceeccc
Confidence 3344555555577888884 3 55555543211 111 113445 9999999999876655543 2237999999
Q ss_pred CHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH
Q 025207 79 NPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS 158 (256)
Q Consensus 79 ~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (256)
|+..++.+...-........+...|+... .+.+++||+|+.-+-+...-.++... +. .......+.+
T Consensus 80 S~V~V~~m~~~~~~~~~~~~~~~~d~~~l--~fedESFdiVIdkGtlDal~~de~a~------~~-----~~~v~~~~~e 146 (482)
T KOG2352|consen 80 SSVVVAAMQVRNAKERPEMQMVEMDMDQL--VFEDESFDIVIDKGTLDALFEDEDAL------LN-----TAHVSNMLDE 146 (482)
T ss_pred cHHHHHHHHhccccCCcceEEEEecchhc--cCCCcceeEEEecCccccccCCchhh------hh-----hHHhhHHHhh
Confidence 99999887654322122237778887665 45578999999854433322222110 00 0135677889
Q ss_pred HhhccccCeEEEEEEe
Q 025207 159 ADKLLSKRGWLYLVTL 174 (256)
Q Consensus 159 ~~~~LkpgG~l~~~~~ 174 (256)
++++|++||+.+.++.
T Consensus 147 Vsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 147 VSRVLAPGGKYISVTL 162 (482)
T ss_pred HHHHhccCCEEEEEEe
Confidence 9999999999887765
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.5e-05 Score=64.38 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=56.1
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.++++|..+.+....+++||+|++||||......... ...+. ...-...+..++..+.++|||||.+++.... .
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~----~~~~~-~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~-~ 83 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGL----IEAWK-EDLFIDWLYEWIDECHRVLKKQGTMYIMNST-E 83 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccc----ccccc-HHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc-h
Confidence 7899999998766667899999999999742110000 00000 0111234568899999999999999986433 2
Q ss_pred CHHHHHHHHHHcCCcE
Q 025207 178 DPSQICLQMMEKGYAA 193 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~ 193 (256)
.... ...+.+.+|..
T Consensus 84 ~~~~-~~~~~~~~f~~ 98 (284)
T PRK11524 84 NMPF-IDLYCRKLFTI 98 (284)
T ss_pred hhhH-HHHHHhcCcce
Confidence 2223 34455566643
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=9e-05 Score=63.48 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=72.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEEC
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~n 122 (256)
....+|+|.|.|.++-.+.. ++|. |-+++.+...+-.+..++. .| ...+.+|.++..| +-|+|+.-
T Consensus 178 v~~avDvGgGiG~v~k~ll~----~fp~--ik~infdlp~v~~~a~~~~-~g--V~~v~gdmfq~~P-----~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS----KYPH--IKGINFDLPFVLAAAPYLA-PG--VEHVAGDMFQDTP-----KGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH----hCCC--CceeecCHHHHHhhhhhhc-CC--cceecccccccCC-----CcCeEEEE
Confidence 48999999999998655444 3774 7788888777777777664 44 3667778777643 34799885
Q ss_pred CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 123 PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 123 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-..++.++. ...+++++|.+.|+|||.++++..
T Consensus 244 WiLhdwtDe-------------------dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 244 WILHDWTDE-------------------DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred eecccCChH-------------------HHHHHHHHHHHhCCCCCEEEEEec
Confidence 444444432 367999999999999999999775
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0002 Score=61.69 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=78.9
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
..+|+|.-+|||.=+|-++... +...++.-|+||++++.+++|+..| +.+..+++.|+...+... ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~----~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~-~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET----GVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHEL-HRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhc----CccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhc-CCCccEEec
Confidence 7999999999999888777763 3338999999999999999999999 445577778888776553 368999966
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+| |.. ..-+++...+.++.||.+.+..
T Consensus 128 DP-FGS------------------------PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DP-FGS------------------------PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CC-CCC------------------------CchHHHHHHHHhhcCCEEEEEe
Confidence 53 432 2355777777888899999854
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00035 Score=59.63 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=67.6
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.|.+.+++.+. ..++..++|.=+|.|.-+..+++.+ ++++|+|+|.++.+++.+++++...+-...++++++.
T Consensus 7 Vll~Evl~~L~---~~~ggiyVD~TlG~GGHS~~iL~~l----~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~ 79 (305)
T TIGR00006 7 VLLDEVVEGLN---IKPDGIYIDCTLGFGGHSKAILEQL----GTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFA 79 (305)
T ss_pred hhHHHHHHhcC---cCCCCEEEEeCCCChHHHHHHHHhC----CCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHH
Confidence 34455555553 2577899999999999998888764 3479999999999999999988755434488888887
Q ss_pred hchhhh---cCCCccEEEECC
Q 025207 106 SGLEKR---LAGLVDVMVVNP 123 (256)
Q Consensus 106 ~~~~~~---~~~~fD~Ii~np 123 (256)
+..... ...++|.|+.|.
T Consensus 80 ~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 80 NFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHHHHhcCCCcccEEEEec
Confidence 764322 235699999854
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00085 Score=57.79 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=48.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.++||+||++|.++-.+.+. ++.|+|||..+-. . .+... -....+..|.....++ .+.+|.++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l~-~----~L~~~-~~V~h~~~d~fr~~p~--~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPMA-Q----SLMDT-GQVEHLRADGFKFRPP--RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhcC-H----hhhCC-CCEEEEeccCcccCCC--CCCCCEEE
Confidence 58899999999999998777765 5699999965422 1 12111 1236666676665443 46899999
Q ss_pred ECCC
Q 025207 121 VNPP 124 (256)
Q Consensus 121 ~npP 124 (256)
|+..
T Consensus 276 cDmv 279 (357)
T PRK11760 276 CDMV 279 (357)
T ss_pred Eecc
Confidence 9753
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00034 Score=57.97 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=88.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.|+-+| -.-..+++++.- . -|+ +|..+||++..++...+.+++.|.++ +.+..|+.+++++....+||+++
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt--~-mpk-~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT--G-MPK-RIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc--C-CCc-eEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeee
Confidence 677899888 444445444432 1 233 89999999999999999999999985 89999999998887778999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC---eEEEEEEeCCCCH--HHHHH-HHHHcCCc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR---GWLYLVTLTANDP--SQICL-QMMEKGYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~--~~~~~-~~~~~g~~ 192 (256)
.+||+- ...+..|+..-...||.- |++.+.....+.. .++++ ++.++|+-
T Consensus 227 TDPpeT----------------------i~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvV 282 (354)
T COG1568 227 TDPPET----------------------IKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVV 282 (354)
T ss_pred cCchhh----------------------HHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCee
Confidence 999974 223667788878888877 7777754322211 14455 44555543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0012 Score=49.47 Aligned_cols=105 Identities=23% Similarity=0.349 Sum_probs=65.4
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcC-CCccEEEECC
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLA-GLVDVMVVNP 123 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~-~~fD~Ii~np 123 (256)
++|+|||+|... .+..... ....++++|+++.++..++......... ..+...|......++.. ..||++....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG---RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC---CCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999999965 2333211 1147999999999998855544321111 25666665542123223 4799994432
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.+.... ....+..+.+.|+|+|.+++.....
T Consensus 128 ~~~~~~----------------------~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLLP----------------------PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcCC----------------------HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 211100 3677889999999999999866543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00097 Score=56.09 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=60.7
Q ss_pred CCCEEEEecccccHHH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-HcCCc--ceEEEcchhhchhhhcCCCcc
Q 025207 42 HPVLCMEVGCGSGYVI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-AHNVH--ADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~-~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-~~~~~--~~~~~~d~~~~~~~~~~~~fD 117 (256)
.+.+|+=||||.=-++ +.+++. ..+++.|+++|+++++++.+++-+. ..++. ..++.+|..+...+ -..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~---~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d--l~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQ---HGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD--LKEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH-----HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------S
T ss_pred ccceEEEEcCCCcchHHHHHHHH---hCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc--cccCC
Confidence 3569999999965443 333322 2456789999999999999998877 33443 38999998776433 25899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+|+.. ++.+... ..-.+++..+.+.++||..+++=
T Consensus 195 vV~lA------------------alVg~~~--e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLA------------------ALVGMDA--EPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-------------------TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEh------------------hhccccc--chHHHHHHHHHhhCCCCcEEEEe
Confidence 99873 1222111 11478899999999999998884
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=56.22 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=88.6
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+++|+.||.|.+.+.+.+. +. -.+.++|+++.+++.-+.|.. ....+|+.+......++.+|+++..||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a----g~-~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA----GF-EVVWAVEIDPDACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT----TE-EEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc----Cc-EEEEEeecCHHHHHhhhhccc------ccccccccccccccccccceEEEeccC
Confidence 6999999999988777665 21 269999999999999888875 678888887754322226999999998
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCcEEEEEe
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
-...+..... .. ..+.++ ..+..+++-+ +.++|.-+++=..+... ....+.+.|.+.||.+.....
T Consensus 71 CQ~fS~ag~~-----~~-~~d~r~-~L~~~~~~~v-~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vl 142 (335)
T PF00145_consen 71 CQGFSIAGKR-----KG-FDDPRN-SLFFEFLRIV-KELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVL 142 (335)
T ss_dssp -TTTSTTSTH-----HC-CCCHTT-SHHHHHHHHH-HHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CceEeccccc-----cc-cccccc-hhhHHHHHHH-hhccceEEEecccceeeccccccccccccccccccceeehhccc
Confidence 7765543210 00 111111 1233444433 45688654442222221 135677888888987654331
Q ss_pred ------cCCCCccEEEEEEEecC
Q 025207 199 ------RSTEEENLHIIKFWRDF 215 (256)
Q Consensus 199 ------~~~~~~~~~l~~~~~~~ 215 (256)
..+...+++++...++.
T Consensus 143 na~~yGvPQ~R~R~fivg~r~~~ 165 (335)
T PF00145_consen 143 NAADYGVPQNRERVFIVGIRKDL 165 (335)
T ss_dssp EGGGGTSSBE-EEEEEEEEEGGG
T ss_pred cHhhCCCCCceeeEEEEEECCCC
Confidence 22345677777666654
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0024 Score=52.81 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=73.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----CC--cceEEEcchhhchhh-hcC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----NV--HADLINTDIASGLEK-RLA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----~~--~~~~~~~d~~~~~~~-~~~ 113 (256)
...+|||+|+|+|..++.++..+ ++++...|.. ..++..+.+...+ +. ...+...+....... +..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-----~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~ 159 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-----GAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL 159 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-----cceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc
Confidence 35689999999999998888863 4588888864 4444444443333 22 223333333332221 122
Q ss_pred CC-ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC-HHHHHHHHHHcCC
Q 025207 114 GL-VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND-PSQICLQMMEKGY 191 (256)
Q Consensus 114 ~~-fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~g~ 191 (256)
.. ||+|++--+++.... ...++..+..+|..+|.+++..+-.+. ..++...+.+..+
T Consensus 160 ~~~~DlilasDvvy~~~~---------------------~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~~~~~~ 218 (248)
T KOG2793|consen 160 PNPFDLILASDVVYEEES---------------------FEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLLFKKDL 218 (248)
T ss_pred CCcccEEEEeeeeecCCc---------------------chhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHHhhhhh
Confidence 34 899998666554333 456777888888899977776653332 2345555555444
Q ss_pred c
Q 025207 192 A 192 (256)
Q Consensus 192 ~ 192 (256)
.
T Consensus 219 ~ 219 (248)
T KOG2793|consen 219 K 219 (248)
T ss_pred c
Confidence 3
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0024 Score=49.82 Aligned_cols=138 Identities=21% Similarity=0.184 Sum_probs=80.2
Q ss_pred ecccccHHHHHHHHHhcccCCCceEEEEe--CCHHHHHH---HHHHHHHcCC-cc-eEEEcchhhchhhh--cCCCccEE
Q 025207 49 VGCGSGYVITSLALMLGQEVPGVQYIATD--INPYAVEV---TRKTLEAHNV-HA-DLINTDIASGLEKR--LAGLVDVM 119 (256)
Q Consensus 49 lGcG~G~~~~~la~~l~~~~~~~~v~giD--~~~~~i~~---a~~~~~~~~~-~~-~~~~~d~~~~~~~~--~~~~fD~I 119 (256)
+|=|.-.++.++++.... ...++++- ..++..+. +..|++...- .. -++..|+.+..... ....||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~---~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGS---ATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCC---CCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence 455555666666665432 34555554 44444433 3356554421 12 34455666554333 45789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC--HHHHHHHHHHcCCcEEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND--PSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~g~~~~~~~ 197 (256)
+.|.|+.-..... ...... .....+..++..+..+|+++|.+.+....... .-.+....++.|+......
T Consensus 80 iFNFPH~G~~~~~-~~~~i~-------~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 80 IFNFPHVGGGSED-GKRNIR-------LNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred EEeCCCCCCCccc-hhHHHH-------HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEe
Confidence 9999986411100 000000 11346788999999999999999997764432 2357777777888765443
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.011 Score=49.86 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=60.6
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh---cCCCc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR---LAGLV 116 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~f 116 (256)
.+++...+|.--|.|.-+..+...+ .+.++++|+|.++.+++.|++.+...+-...+++.++.+..... .-+++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l---~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~v 97 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKL---PDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKV 97 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhC---CCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCce
Confidence 3678999999999999877777664 23467999999999999999998876655588888776654322 23567
Q ss_pred cEEEE
Q 025207 117 DVMVV 121 (256)
Q Consensus 117 D~Ii~ 121 (256)
|-|+.
T Consensus 98 DGiL~ 102 (314)
T COG0275 98 DGILL 102 (314)
T ss_pred eEEEE
Confidence 87776
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00046 Score=60.45 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=75.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++..++|+|||.|....+++.. .++.++|+|+++.-+..+.......+++. .++..|+.+. ++.+..||.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-----~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~--~fedn~fd~ 181 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-----KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM--PFEDNTFDG 181 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-----ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC--CCCccccCc
Confidence 56779999999999987776653 56789999999988877665544444443 5677777665 455789999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+.+.-.-.+.+ ....++.++.+.++|||..+..
T Consensus 182 v~~ld~~~~~~---------------------~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 182 VRFLEVVCHAP---------------------DLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEEEeecccCC---------------------cHHHHHHHHhcccCCCceEEeH
Confidence 97732111111 1567889999999999999873
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0019 Score=61.57 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=87.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhc---ccCC-----CceEEEEeCCH---HHHHHH-----------HHHHHH-----c
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLG---QEVP-----GVQYIATDINP---YAVEVT-----------RKTLEA-----H 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~---~~~~-----~~~v~giD~~~---~~i~~a-----------~~~~~~-----~ 93 (256)
+..-+|+|+|-|+|...+.+.+... +..+ ..+++++|..| +.+..+ +...+. .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 4558999999999998887776652 1222 46899999755 222222 121111 1
Q ss_pred CC----------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 94 NV----------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 94 ~~----------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
|+ ..++..+|+.+.+... ...||+++.++ |.+..+++ .....++..+.+++
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~-~~~~d~~~lD~-FsP~~np~-----------------~W~~~~~~~l~~~~ 196 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQL-DARADAWFLDG-FAPAKNPD-----------------MWSPNLFNALARLA 196 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhc-cccccEEEeCC-CCCccChh-----------------hccHHHHHHHHHHh
Confidence 21 2267788988876654 35799999974 22222221 12578899999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025207 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
+|||.+.-. +....+++.+...||++..
T Consensus 197 ~~~~~~~t~----t~a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 197 RPGATLATF----TSAGFVRRGLQEAGFTVRK 224 (662)
T ss_pred CCCCEEEEe----ehHHHHHHHHHHcCCeeee
Confidence 999999853 3567899999999998653
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=9e-05 Score=58.81 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=61.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+.++||+|+|.|.++..++.... .|+++|.|..|....++. +. +++ ...+.... +-++|+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fe------evyATElS~tMr~rL~kk----~y--nVl--~~~ew~~t--~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFE------EVYATELSWTMRDRLKKK----NY--NVL--TEIEWLQT--DVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHH------HHHHHHhhHHHHHHHhhc----CC--cee--eehhhhhc--CceeehHH
Confidence 4668999999999999876665532 699999999998876553 11 121 11122111 23689998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc-CeEEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK-RGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 173 (256)
|--- ..+ +...-++++.++.+|+| +|++++..
T Consensus 175 clNl--------------LDR-------c~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 175 CLNL--------------LDR-------CFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHH--------------HHh-------hcChHHHHHHHHHHhccCCCcEEEEE
Confidence 7100 000 11135778999999999 89887643
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.001 Score=56.58 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
...|++.++... +.+++.|||+.||+|.-++++.++ +-+.+|+|++++.++.|++++.
T Consensus 194 P~~L~erlI~~~----S~~GD~VLDPF~GSGTT~~AA~~l------gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 194 PEALLKRIILAS----SNPGDIVLDPFAGSFTTGAVAKAS------GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHH
Confidence 455666655554 469999999999999988766655 3479999999999999999985
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0015 Score=53.76 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=49.1
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
.|..=...|.+.++... ..++..|||+.||+|..++++.+. +-+.+|+|++++..+.+.+++..
T Consensus 144 hp~~kP~~l~~~~i~~~----s~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 144 HPTEKPVTSLQPLIESF----THPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCcHHHHHHHHHHh----CCCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHH
Confidence 34444456666666544 368999999999999988776654 34799999999999999988864
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=53.55 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=40.9
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|..=...|++.++... ..++..|||+.||+|+.++++.++ +-+.+|+|++++.++.|++
T Consensus 173 ~~~kP~~l~~~lI~~~----t~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAS----TNPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHH----S-TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhh----hccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHHHHHhcC
Confidence 3333455666665554 468999999999999988776665 3379999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.016 Score=47.58 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=95.4
Q ss_pred cceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025207 7 QIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+.-+...|+.|.-|.++..+-....+... + -.+...+|+|+|+..-+.-+...+..++.-..++.+|++...++..
T Consensus 46 LFe~I~~LPEYYpTRtEaaIl~~~a~Eia~-~--~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~t 122 (321)
T COG4301 46 LFEQITRLPEYYPTRTEAAILQARAAEIAS-I--TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRAT 122 (321)
T ss_pred HHHHHhccccccCchhHHHHHHHHHHHHHH-h--hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHH
Confidence 344456788999888887766555544332 2 2478999999999998877777776665567899999999998876
Q ss_pred HHHHHHc--CCcceEEEcchhhchhhhcCCCccEEEE--CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhc
Q 025207 87 RKTLEAH--NVHADLINTDIASGLEKRLAGLVDVMVV--NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKL 162 (256)
Q Consensus 87 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~fD~Ii~--npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (256)
.+.+... ++....+.+|....+....... --+++ .....+.++ .....|+.++...
T Consensus 123 a~ai~~~y~~l~v~~l~~~~~~~La~~~~~~-~Rl~~flGStlGN~tp-------------------~e~~~Fl~~l~~a 182 (321)
T COG4301 123 ATAILREYPGLEVNALCGDYELALAELPRGG-RRLFVFLGSTLGNLTP-------------------GECAVFLTQLRGA 182 (321)
T ss_pred HHHHHHhCCCCeEeehhhhHHHHHhcccCCC-eEEEEEecccccCCCh-------------------HHHHHHHHHHHhc
Confidence 6666543 4455777888776654433222 22222 111111111 1256889999999
Q ss_pred cccCeEEEE
Q 025207 163 LSKRGWLYL 171 (256)
Q Consensus 163 LkpgG~l~~ 171 (256)
|+||-.+.+
T Consensus 183 ~~pGd~~Ll 191 (321)
T COG4301 183 LRPGDYFLL 191 (321)
T ss_pred CCCcceEEE
Confidence 999999887
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00066 Score=56.61 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=71.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+..++|+|||.|-.+ .. .|.+.++|.|++...+..+++. +.. .+...|+.... +.+.+||.+++
T Consensus 45 ~gsv~~d~gCGngky~-------~~-~p~~~~ig~D~c~~l~~~ak~~----~~~-~~~~ad~l~~p--~~~~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYL-------GV-NPLCLIIGCDLCTGLLGGAKRS----GGD-NVCRADALKLP--FREESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccC-------cC-CCcceeeecchhhhhccccccC----CCc-eeehhhhhcCC--CCCCccccchh
Confidence 5789999999999842 11 4778999999999988877652 111 47777887763 34688999987
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
--..++... ......+++++.+.|+|||...+...
T Consensus 110 iavihhlsT------------------~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 110 IAVIHHLST------------------RERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhh------------------HHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 433332222 22357889999999999999777554
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.004 Score=49.97 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=56.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~------~~ 113 (256)
+++.|+|+|.-.|.-++..|.++...+++++|+|+|++...... +.++.+.+ ..+++++|..+...-. ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 68999999999999888888877655577899999996544321 12222222 2389999876543210 12
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
....+|+.+--+.+ ......++....++++|+++++
T Consensus 110 ~~~vlVilDs~H~~----------------------~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 110 PHPVLVILDSSHTH----------------------EHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp -SSEEEEESS--------------------------SSHHHHHHHHHHT--TT-EEEE
T ss_pred CCceEEEECCCccH----------------------HHHHHHHHHhCccCCCCCEEEE
Confidence 34557766422110 1145567778999999999997
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.001 Score=59.88 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=75.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...|+-+|.|-|-+.-+..+....-..+.+++++|.+|.++-..+. ....+++. .++..|+.....+ .++.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap--~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP--REQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc--hhhccchH
Confidence 5678888999998765555544333457899999999999977655 33334443 8999999888644 36889998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+- +.|.....+.....|..+.+.|||+|+.+=
T Consensus 445 SE-------------------LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 445 SE-------------------LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred HH-------------------hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 72 122112223457889999999999998774
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.009 Score=46.31 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+++.+.+.. .+..+|+=|||=+-...+.- ...++.+++..|++..--.. +-+ .++.-|
T Consensus 12 ~~~l~~~l~~~~-----~~~~~iaclstPsl~~~l~~-----~~~~~~~~~Lle~D~RF~~~--------~~~-~F~fyD 72 (162)
T PF10237_consen 12 AEFLARELLDGA-----LDDTRIACLSTPSLYEALKK-----ESKPRIQSFLLEYDRRFEQF--------GGD-EFVFYD 72 (162)
T ss_pred HHHHHHHHHHhc-----CCCCEEEEEeCcHHHHHHHh-----hcCCCccEEEEeecchHHhc--------CCc-ceEECC
Confidence 344555555532 35689999988776653222 12456789999998775432 111 244445
Q ss_pred hhhc--hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 104 IASG--LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 104 ~~~~--~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.... .+....++||+||++|||.. .+.+.+....+..++++++.+++++. ..+...
T Consensus 73 ~~~p~~~~~~l~~~~d~vv~DPPFl~---------------------~ec~~k~a~ti~~L~k~~~kii~~Tg-~~~~~~ 130 (162)
T PF10237_consen 73 YNEPEELPEELKGKFDVVVIDPPFLS---------------------EECLTKTAETIRLLLKPGGKIILCTG-EEMEEL 130 (162)
T ss_pred CCChhhhhhhcCCCceEEEECCCCCC---------------------HHHHHHHHHHHHHHhCccceEEEecH-HHHHHH
Confidence 4443 22233689999999999942 23356667778888899999998653 222333
Q ss_pred HHHHHHHcCCcEEEEEec
Q 025207 182 ICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~ 199 (256)
+.+.+ +++.....+.
T Consensus 131 ~~~ll---~~~~~~f~p~ 145 (162)
T PF10237_consen 131 IKKLL---GLRMCDFQPE 145 (162)
T ss_pred HHHHh---CeeEEeEEec
Confidence 33333 5554444333
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0086 Score=52.05 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=94.4
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCC-CccEEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAG-LVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~fD~Ii~ 121 (256)
..+++|+.||.|.+.+.+... +.+ -+.++|+++.+++.-+.|... ..++..|+.....+.... .+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a----gf~-~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA----GFE-IVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhc----CCe-EEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEe
Confidence 468999999999987666554 222 589999999999988877642 367777777665443333 7999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------CCHHHHHHHHHHcCCcEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-------NDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~~~~~g~~~~ 194 (256)
.||....+..... ....++++. +-.-+.++...++| .++++.... ...+.+.+.|++.||.+.
T Consensus 74 GpPCQ~FS~aG~r------~~~~D~R~~--L~~~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~ 143 (328)
T COG0270 74 GPPCQDFSIAGKR------RGYDDPRGS--LFLEFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYGVE 143 (328)
T ss_pred CCCCcchhhcCcc------cCCcCccce--eeHHHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCcch
Confidence 9998765543211 112222221 11223344556777 444434322 245678888889998632
Q ss_pred E-EE-----ecCCCCccEEEEEEEec
Q 025207 195 I-VV-----QRSTEEENLHIIKFWRD 214 (256)
Q Consensus 195 ~-~~-----~~~~~~~~~~l~~~~~~ 214 (256)
. +. -..+..++++++-..++
T Consensus 144 ~~ilna~dyGvPQ~ReRvfiig~~~~ 169 (328)
T COG0270 144 FNILNAADYGVPQSRERVFIVGFRRD 169 (328)
T ss_pred HheeeHHhcCCCCCccEEEEEEecCc
Confidence 1 11 23455678888766553
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0063 Score=51.55 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhcccc-----cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc------
Q 025207 25 FALVDALLADRINLV-----EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH------ 93 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~-----~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~------ 93 (256)
..+...+++++..+. .+...+||-+|||.|.++..++.+ ++ .+-|=|.|--|+=. ..+..|
T Consensus 128 d~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~----G~--~~qGNEfSy~Mli~--S~FiLN~~~~~n 199 (369)
T KOG2798|consen 128 DQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL----GF--KCQGNEFSYFMLIC--SSFILNYCKQEN 199 (369)
T ss_pred hhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh----cc--cccccHHHHHHHHH--HHHHHHhhccCC
Confidence 444445555554432 235689999999999999888876 44 33344665555421 111111
Q ss_pred CCcc-------------------------------------eEEEcchhhchhhh-cCCCccEEEECCCCCCCCCccccc
Q 025207 94 NVHA-------------------------------------DLINTDIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGR 135 (256)
Q Consensus 94 ~~~~-------------------------------------~~~~~d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~ 135 (256)
.+.. .+..||+.+.-... ..+.||+|+.+ |+....
T Consensus 200 q~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc--fFIDTa----- 272 (369)
T KOG2798|consen 200 QFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC--FFIDTA----- 272 (369)
T ss_pred cEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE--EEeech-----
Confidence 1100 11223433332211 12357777764 332111
Q ss_pred ccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe----CCC------------CHHHHHHHHHHcCCcEEE
Q 025207 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL----TAN------------DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~------------~~~~~~~~~~~~g~~~~~ 195 (256)
.....+++.+..+|||||+-+=+.| ..+ ..+++...+...||+...
T Consensus 273 --------------~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 273 --------------HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred --------------HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 2366889999999999999774332 011 246788888888998644
|
|
| >PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=47.77 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=42.7
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----CHHHHHHHHHHc
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----DPSQICLQMMEK 189 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~~ 189 (256)
.||+||.||||............. ....+.+..+++...++| +|.+.+++|..= ....+++.+.+.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~-------~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~ 72 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKK-------KKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNN 72 (106)
T ss_pred CcCEEEECCCChhhccccchhhcc-------cccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcC
Confidence 699999999998766532211100 013456778899999888 999988887322 234556665443
|
The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.013 Score=46.36 Aligned_cols=137 Identities=14% Similarity=0.123 Sum_probs=79.5
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH----H--HHHcCCcc-eEEEcchhhchhhhc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK----T--LEAHNVHA-DLINTDIASGLEKRL 112 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~----~--~~~~~~~~-~~~~~d~~~~~~~~~ 112 (256)
-+++.+|+|+-.|.|.++.-++..++ |+..|+++-..+...-..+. + ..+....+ +.+-.+..... .
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vg---p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~---~ 119 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVG---PKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG---A 119 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcC---CceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---C
Confidence 36899999999999999988888764 55588887654442111111 1 11111111 33333333322 1
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------C
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------D 178 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~ 178 (256)
.+..|+++.+--|+.... .++.. ....++...+++.|||||++.+..+... .
T Consensus 120 pq~~d~~~~~~~yhdmh~----------k~i~~----~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~ 185 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHN----------KNIHP----ATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRID 185 (238)
T ss_pred CCcccccccchhhhhhhc----------cccCc----chHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccC
Confidence 356677766544432221 11111 2367788889999999999999775322 2
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 025207 179 PSQICLQMMEKGYAARIV 196 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~ 196 (256)
..-+.+..+..||.....
T Consensus 186 ~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 186 PAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred hHHHHHHHHhhcceeeee
Confidence 234566667778876543
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0051 Score=45.19 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=53.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
-.+++|+|+|.+.|.-++.++.. +. -.|+++|.++...+..+++++.+.+-. -+...++.. . =+.||+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~----GA-K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~---~--Y~~~Di~ 96 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR----GA-SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNG---E--YEDVDIF 96 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc----Cc-cEEEEeccCHHHHHHHHHHhhhheeeeceeecccccc---c--CCCcceE
Confidence 47899999999999999988876 22 379999999999999999988775432 232332221 1 2578888
Q ss_pred EEC
Q 025207 120 VVN 122 (256)
Q Consensus 120 i~n 122 (256)
+.+
T Consensus 97 ~iD 99 (156)
T PHA01634 97 VMD 99 (156)
T ss_pred EEE
Confidence 764
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=48.91 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=63.8
Q ss_pred CCCEEEEecccccH--HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhc----CC
Q 025207 42 HPVLCMEVGCGSGY--VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRL----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~--~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~----~~ 114 (256)
.-...||+|||--. ..-++++.. .|+++|+=+|++|-.+.-++..+..+.-. ..++.+|+.+...-+. .+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~---~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRV---APDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH----TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhh---CCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 34789999999542 444455443 68999999999999999888877655421 2789999877632111 12
Q ss_pred Ccc-----EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025207 115 LVD-----VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 115 ~fD-----~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
-+| .++.....++.++.+ ....++..+.+.|.||..+++++.+...
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~------------------dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDD------------------DPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGC------------------THHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred cCCCCCCeeeeeeeeeccCCCcc------------------CHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 233 233333332222211 1578899999999999999998876653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0062 Score=51.17 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=81.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCc---ceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVH---ADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~---~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||=+|-|.|.+....++. . .- -.+.-+|++...++..++..... +.. ..++.+|...+......+.
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~--~v-e~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-K--SV-ENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-c--cc-cceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence 36799999999999986555554 1 11 26899999999999988876643 332 3788899988887766789
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
||+|+.+-- ++ ..+.. ..+...+.+.+.+.||++|+++....
T Consensus 196 ~dVii~dss-----dp----vgpa~--------~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 196 FDVIITDSS-----DP----VGPAC--------ALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred ceEEEEecC-----Cc----cchHH--------HHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 999998420 00 00111 12467788889999999999998653
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0038 Score=51.16 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=47.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---C-C------cceEEEcchhhchhhhcC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---N-V------HADLINTDIASGLEKRLA 113 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~-~------~~~~~~~d~~~~~~~~~~ 113 (256)
.+|||.=+|-|.-++-++.. |++|+++|-||......++-+... . + ..+++++|..+.+. ..+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~ 149 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPD 149 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHS
T ss_pred CEEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcC
Confidence 59999999999998888765 468999999999877766544332 1 2 12899999988876 446
Q ss_pred CCccEEEECCCCCC
Q 025207 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
.+||+|+++|=|-+
T Consensus 150 ~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 150 NSFDVVYFDPMFPE 163 (234)
T ss_dssp S--SEEEE--S---
T ss_pred CCCCEEEECCCCCC
Confidence 89999999987644
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.008 Score=52.05 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC----CceEEEEeCCHHHHHHHHHHHHHc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP----GVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~----~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
+.++.++++.+.......+-.++|+|.|.|.+...+...+.+.+| .+++..+|+|++..+.-+++++..
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 344445555555444345678999999999998888887766555 689999999999988877777644
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.041 Score=41.63 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~ 102 (256)
-..++.++..+ +..+..+.+|+|+|.|.+-++.++... ..-+|+|++|=.+..++-..-+.++.. .+...
T Consensus 58 teQv~nVLSll---~~n~~GklvDlGSGDGRiVlaaar~g~-----~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rk 129 (199)
T KOG4058|consen 58 TEQVENVLSLL---RGNPKGKLVDLGSGDGRIVLAAARCGL-----RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRK 129 (199)
T ss_pred HHHHHHHHHHc---cCCCCCcEEeccCCCceeehhhhhhCC-----CcCCceeccHHHHHHHHHHHHHHhcccchhhhhh
Confidence 33344445544 346778999999999999888777632 257899999999988887777777654 77777
Q ss_pred chhhc
Q 025207 103 DIASG 107 (256)
Q Consensus 103 d~~~~ 107 (256)
|+...
T Consensus 130 dlwK~ 134 (199)
T KOG4058|consen 130 DLWKV 134 (199)
T ss_pred hhhhc
Confidence 77665
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=51.14 Aligned_cols=96 Identities=24% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++++|+=.|+| .|..++.+++.+ +++|+++|.+++-.+.|++.- .+ .++...-.+..... .+.||+|
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~-----ga~Via~~~~~~K~e~a~~lG----Ad-~~i~~~~~~~~~~~-~~~~d~i 233 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM-----GAEVIAITRSEEKLELAKKLG----AD-HVINSSDSDALEAV-KEIADAI 233 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEeCChHHHHHHHHhC----Cc-EEEEcCCchhhHHh-HhhCcEE
Confidence 688999999887 345666666653 479999999999999888742 22 34443211222221 2349999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+..-| ...+....+.|++||+++++-..
T Consensus 234 i~tv~----------------------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 234 IDTVG----------------------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EECCC----------------------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 98533 24467778899999999997654
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0036 Score=53.49 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=57.5
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
.+.+++.+. ..++..++|.=.|.|.-+.++.+. .++++++|+|.++.+++.+++++....-...++++++.+.
T Consensus 9 l~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~----~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 9 LKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEK----LPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNL 81 (310)
T ss_dssp HHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-----TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGH
T ss_pred HHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHh----CCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHH
Confidence 334444443 367889999999999988777766 4568999999999999999887764433447888887665
Q ss_pred hhh---h-cCCCccEEEEC
Q 025207 108 LEK---R-LAGLVDVMVVN 122 (256)
Q Consensus 108 ~~~---~-~~~~fD~Ii~n 122 (256)
... . ...++|.|+.+
T Consensus 82 ~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFD 100 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE
T ss_pred HHHHHHccCCCccCEEEEc
Confidence 432 2 23579999884
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.011 Score=53.31 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=78.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..-..|+|..+|.|.|+.++... .|..+-.-|..-.-.-..+...|+-... .|.-+..+. .+.+||+|-
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~--------~VWVMNVVP~~~~ntL~vIydRGLIG~y--hDWCE~fsT-YPRTYDLlH 432 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD--------PVWVMNVVPVSGPNTLPVIYDRGLIGVY--HDWCEAFST-YPRTYDLLH 432 (506)
T ss_pred cceeeeeeecccccHHHHHhccC--------CceEEEecccCCCCcchhhhhcccchhc--cchhhccCC-CCcchhhee
Confidence 34478999999999986544332 2444433333211112223333432211 233333322 257899998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
++--|....+ ...+..++-++.++|+|+|.+++- .......++..++....|+........
T Consensus 433 A~~lfs~~~~------------------rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 433 ADGLFSLYKD------------------RCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred hhhhhhhhcc------------------cccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhCcceEEEEecCC
Confidence 8765543322 123678899999999999999983 334456678888888888877666544
|
; GO: 0008168 methyltransferase activity |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.089 Score=43.15 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...|++.|+-=+..+.-+++.+||=+|+++|.---.++..+ .|..-|+++|.++.+=+... |++....+.-.+..|
T Consensus 138 rSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiV---GpeG~VYAVEfs~rsGRdL~-nmAkkRtNiiPIiED 213 (317)
T KOG1596|consen 138 RSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIV---GPEGCVYAVEFSHRSGRDLI-NMAKKRTNIIPIIED 213 (317)
T ss_pred HHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhccc---CCCceEEEEEecccchHHHH-HHhhccCCceeeecc
Confidence 56777777666666667899999999999998644444444 56778999999876543322 222112223455667
Q ss_pred hhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC----
Q 025207 104 IASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND---- 178 (256)
Q Consensus 104 ~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---- 178 (256)
+..+.. ...-.-+|+|+++-+.- + -..-+.-+....||+||.++++.....-
T Consensus 214 ArhP~KYRmlVgmVDvIFaDvaqp------------d-----------q~RivaLNA~~FLk~gGhfvisikancidstv 270 (317)
T KOG1596|consen 214 ARHPAKYRMLVGMVDVIFADVAQP------------D-----------QARIVALNAQYFLKNGGHFVISIKANCIDSTV 270 (317)
T ss_pred CCCchheeeeeeeEEEEeccCCCc------------h-----------hhhhhhhhhhhhhccCCeEEEEEecccccccc
Confidence 665432 11123579998875421 0 0123344677889999999986643321
Q ss_pred -H----HHHHHHHHHcCCcEEE-EEecCCCCccEEEEEEEe
Q 025207 179 -P----SQICLQMMEKGYAARI-VVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 179 -~----~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~~ 213 (256)
. ..-.+.|++..++... +........+-+++-..+
T Consensus 271 ~ae~vFa~Ev~klqee~lkP~EqvtLEP~erdha~VvG~Y~ 311 (317)
T KOG1596|consen 271 FAEAVFAAEVKKLQEEQLKPKEQVTLEPFERDHACVVGVYR 311 (317)
T ss_pred cHHHHHHHHHHHHHHhccCchheeccccccCCceEEEEEEe
Confidence 1 1224455555565433 233333444444444433
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.014 Score=50.31 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=66.0
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-CCC
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-AGL 115 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-~~~ 115 (256)
.-.+++|||+|.|.|.-..++-.. +|.. .++.++.|+..-+.. ..+..|-... .....|+.....++. ...
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i----~Pdl~sa~ile~sp~lrkV~-~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ 185 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDI----WPDLKSAVILEASPALRKVG-DTLAENVSTEKTDWRASDVTEDRLSLPAADL 185 (484)
T ss_pred CcCcchhhccCCCCchhhhhhccc----CCCchhhhhhccCHHHHHHH-HHHHhhcccccCCCCCCccchhccCCCccce
Confidence 346788999999999865544444 5542 466677777654433 3344442211 333334333322221 245
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
+++++.---..+. +. ...+...++.+..++.|||.++++.++....
T Consensus 186 ytl~i~~~eLl~d---------------~~---ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 186 YTLAIVLDELLPD---------------GN---EKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred eehhhhhhhhccc---------------cC---cchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 6776652111100 01 1124558999999999999999988765543
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.28 Score=44.65 Aligned_cols=164 Identities=14% Similarity=0.133 Sum_probs=89.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh-----------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK----------- 110 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~----------- 110 (256)
..-+++|+.||.|.+.+.+-.. +. -.|.++|+++.+.+.-+.|....+ ...++.+|+.+....
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~a----G~-~~v~a~Eid~~A~~TY~~N~~~~p-~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAI----GG-QCVFTSEWNKHAVRTYKANWYCDP-ATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHc----CC-EEEEEEechHHHHHHHHHHcCCCC-ccceeccChhhCccccccccchhhhh
Confidence 3569999999999988776543 22 257899999999888777742111 113444555544210
Q ss_pred ----hcCCCccEEEECCCCCCCCCcccccccc---hhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------
Q 025207 111 ----RLAGLVDVMVVNPPYVPTPEDEVGREGI---ASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------- 176 (256)
Q Consensus 111 ----~~~~~fD~Ii~npP~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------- 176 (256)
..-..+|+++..||-...+......... ...+.++..+ ..+..+++ +.+.++|.-+ ++....
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg-~Lf~~~~r-ii~~~kPk~f--vlENV~gl~s~~~ 236 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQG-TLFFDVAR-IIDAKRPAIF--VLENVKNLKSHDK 236 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccc-cHHHHHHH-HHHHhCCCEE--EEeCcHhhhcccc
Confidence 0012589999999987665532211100 0111112221 12233333 3334566633 323211
Q ss_pred -CCHHHHHHHHHHcCCcEEE----------EE-e---cCCCCccEEEEEEEecC
Q 025207 177 -NDPSQICLQMMEKGYAARI----------VV-Q---RSTEEENLHIIKFWRDF 215 (256)
Q Consensus 177 -~~~~~~~~~~~~~g~~~~~----------~~-~---~~~~~~~~~l~~~~~~~ 215 (256)
.....+...|.+.||.+.. +. . ..+..++++++...++.
T Consensus 237 g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~fVPQ~R~RvfiVg~r~~~ 290 (467)
T PRK10458 237 GKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDL 290 (467)
T ss_pred cHHHHHHHHHHHHcCCeEEeccccCcccceEeehhhCCCccCcEEEEEEEeCCc
Confidence 1234677788888988642 10 0 34567788888776543
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.1 Score=45.17 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=84.7
Q ss_pred EEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
|+|+.||.|.+...+.+. +.+ +.++|+++.+++..+.|... .++.+|+.+..... -..+|+++..||
T Consensus 1 vidLF~G~GG~~~Gl~~a------G~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~~-~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA------GFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPSD-IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc------CCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhhh-CCCcCEEEecCC
Confidence 689999999988766554 334 67899999999988887531 45567777654321 135899999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--------CCHHHHHHHHHHcCCcEEEE
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--------NDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~~~~~g~~~~~~ 196 (256)
-...+....... + .+.++ .....+++- .+.++|. +++++... .....+...+++.||.....
T Consensus 69 Cq~fS~ag~~~~-----~-~d~r~-~L~~~~~r~-i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 69 CQPFSIAGKRKG-----F-EDTRG-TLFFEIVRI-LKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred CcccchhcccCC-----C-CCchh-hHHHHHHHH-HhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEE
Confidence 766554221110 0 01111 122333333 3446775 33333321 12346677788889876433
Q ss_pred Ee------cCCCCccEEEEEEE
Q 025207 197 VQ------RSTEEENLHIIKFW 212 (256)
Q Consensus 197 ~~------~~~~~~~~~l~~~~ 212 (256)
.. ..+..++++++-..
T Consensus 139 ~l~a~dyGvPQ~R~R~f~ia~r 160 (315)
T TIGR00675 139 VLNAKDFGVPQNRERIYIVGFR 160 (315)
T ss_pred EEcHHHCCCCCCccEEEEEEEe
Confidence 21 23456777766555
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0043 Score=55.53 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=81.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh--cCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR--LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~--~~~~f 116 (256)
.++.+|||.-|++|.-++..++.+.. -.+|++-|.++.+++..++|+..|+... +....|+....... ....|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~---v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPG---VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcc---hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccccccc
Confidence 46789999999999999888887642 2379999999999999999999997765 67777776554332 24789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|=.+ ||.. ...||+.+.+.+..||.+.+..
T Consensus 185 DvIDLD-PyGs------------------------~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLD-PYGS------------------------PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecC-CCCC------------------------ccHHHHHHHHHhhcCCEEEEEe
Confidence 999776 4432 2366888888899999999854
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0033 Score=55.27 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=54.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLE 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~ 109 (256)
+++..|.|+.||.|-+.+.+++. ++.|++-|.++++++..+.|+..|.+.. .+++.|+.+.+.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc------CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 68999999999999999888876 5899999999999999999999887653 778888777763
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0096 Score=48.35 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=38.8
Q ss_pred ccEEEECCCCCCCCCc---cc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH-HHHHHHHHcC
Q 025207 116 VDVMVVNPPYVPTPED---EV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS-QICLQMMEKG 190 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~g 190 (256)
+|+|+++|||...... .. ........+ ...+..++.++.++|||||.+++......... ....+.+..|
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y------~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g 74 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEY------LEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG 74 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHH------HHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHH------HHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh
Confidence 5999999999876651 10 000001111 22467788999999999999988654333222 3444444456
Q ss_pred -CcE
Q 025207 191 -YAA 193 (256)
Q Consensus 191 -~~~ 193 (256)
|..
T Consensus 75 ~~~~ 78 (231)
T PF01555_consen 75 GFFL 78 (231)
T ss_dssp T-EE
T ss_pred hhhe
Confidence 654
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.032 Score=41.14 Aligned_cols=88 Identities=25% Similarity=0.313 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcC-CCccEEEECCCCCC
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLA-GLVDVMVVNPPYVP 127 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~-~~fD~Ii~npP~~~ 127 (256)
|.|..++.+++.+ +++|+++|.++...+.+++ .|.. .++.. |+.+...+... ..+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~-----G~~vi~~~~~~~k~~~~~~----~Ga~-~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-----GAKVIATDRSEEKLELAKE----LGAD-HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHT-----TSEEEEEESSHHHHHHHHH----TTES-EEEETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHc-----CCEEEEEECCHHHHHHHHh----hccc-ccccccccccccccccccccccceEEEEecC---
Confidence 4577777777763 3799999999998888765 3422 22222 23333333333 47999987532
Q ss_pred CCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 128 TPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
....++...++|+++|+++++....
T Consensus 68 ------------------------~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ------------------------SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------------------------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ------------------------cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2467888889999999999976543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.031 Score=42.17 Aligned_cols=116 Identities=17% Similarity=0.105 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
+.+.+|+..+.. ....-|||+|-|+|.- -..|.+..|+-.|+++|-.-.+-..+. .....++.+|+
T Consensus 15 R~~L~~a~~~v~----~~~G~VlElGLGNGRT----ydHLRe~~p~R~I~vfDR~l~~hp~~~------P~~~~~ilGdi 80 (160)
T PF12692_consen 15 RDCLNWAAAQVA----GLPGPVLELGLGNGRT----YDHLREIFPDRRIYVFDRALACHPSST------PPEEDLILGDI 80 (160)
T ss_dssp HHHHHHHHHHTT----T--S-EEEE--TTSHH----HHHHHHH--SS-EEEEESS--S-GGG---------GGGEEES-H
T ss_pred HHHHHHHHHHhc----CCCCceEEeccCCCcc----HHHHHHhCCCCeEEEEeeecccCCCCC------CchHheeeccH
Confidence 445566666654 3458899999999994 344555588889999995433222111 11238999999
Q ss_pred hhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 105 ASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 105 ~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.+.++. ......-++-++.-... ++ +.......+-..+..+|.|||+++-
T Consensus 81 ~~tl~~~~~~g~~a~laHaD~G~g~--------~~---------~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 81 RETLPALARFGAGAALAHADIGTGD--------KE---------KDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHHHHHHH-S-EEEEEE----S---------HH---------HHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHhHHHHhcCCceEEEEeecCCCC--------cc---------hhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 888765 33333344433211110 00 0111233334556789999999885
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.024 Score=50.20 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=46.4
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhc
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASG 107 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~ 107 (256)
..|||+|+|||.+++-++.. +. -.++++|.-.-|.+.|++....||+.. +++.....+.
T Consensus 68 v~vLdigtGTGLLSmMAvra----ga-D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA----GA-DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHh----cC-CeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 57999999999987666655 32 369999999999999999999999865 5555544443
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.09 Score=38.87 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=55.2
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++..+|+.+.++.. ...||+|+.++ |.+..+++ .| ...++..+.+++++||.+.- +.
T Consensus 34 ~L~~gDa~~~l~~l-~~~~Da~ylDg-FsP~~nPe--------lW---------s~e~~~~l~~~~~~~~~l~T----ys 90 (124)
T PF05430_consen 34 TLWFGDAREMLPQL-DARFDAWYLDG-FSPAKNPE--------LW---------SEELFKKLARLSKPGGTLAT----YS 90 (124)
T ss_dssp EEEES-HHHHHHHB--T-EEEEEE-S-S-TTTSGG--------GS---------SHHHHHHHHHHEEEEEEEEE----S-
T ss_pred EEEEcHHHHHHHhC-cccCCEEEecC-CCCcCCcc--------cC---------CHHHHHHHHHHhCCCcEEEE----ee
Confidence 78889988877653 47899999985 44433332 11 46889999999999998876 34
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCC
Q 025207 178 DPSQICLQMMEKGYAARIVVQRSTE 202 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~~~~~~~ 202 (256)
....+++.+.+.||.+........+
T Consensus 91 ~a~~Vr~~L~~aGF~v~~~~g~g~K 115 (124)
T PF05430_consen 91 SAGAVRRALQQAGFEVEKVPGFGRK 115 (124)
T ss_dssp -BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred chHHHHHHHHHcCCEEEEcCCCCCc
Confidence 4677999999999997655544333
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.014 Score=48.70 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=46.9
Q ss_pred HHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccCC----CceEEEEeCCHHHHHHHHHHHHH
Q 025207 27 LVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEVP----GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 27 l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~la~~l~~~~~----~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
++.++.+.+.... +..+.+|+|+|.|+|.++..+...+.+..| ..+++.+|+|+.+.+.-++++..
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4556666554432 123579999999999999998888876534 47899999999998887777654
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.11 Score=45.60 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=66.5
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCC-CccEE
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAG-LVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~fD~I 119 (256)
++.+|+=+|||. |.+++.+++. ....+|+++|.+++.++.|++........+.-.. +..........+ .+|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~----~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKL----LGASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH----cCCceEEEeCCCHHHHHHHHHhCCCeEeecCccc-cHHHHHHHHhCCCCCCEE
Confidence 445999999995 6666666666 3456899999999999999874321111000000 221111122223 69999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
+-.-- ....+.++.+++++||.+.++......
T Consensus 243 ie~~G---------------------------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAVG---------------------------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EECCC---------------------------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 86311 245788899999999999997755443
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.046 Score=49.19 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=83.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhh-----cCCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKR-----LAGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~ 115 (256)
.+..+|=+|-|.|.++..+... .|...+++++++|.+++.|+.++....- .+.++-.|..+..... .+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~----~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMS----LPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred ccCcEEEEecCCCccccceeee----cCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccC
Confidence 4578888888999876554444 6778999999999999999988754322 2355556655554321 2467
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe--CCCCHHHHHHHHHHc
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL--TANDPSQICLQMMEK 189 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~~ 189 (256)
||+++.+-= .++ . ....+ ....-+...++......|.|.|.+++... +.....++...+++.
T Consensus 371 ~dvl~~dvd---s~d-~-------~g~~~-pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~v 434 (482)
T KOG2352|consen 371 PDVLMVDVD---SKD-S-------HGMQC-PPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKV 434 (482)
T ss_pred CcEEEEECC---CCC-c-------ccCcC-CchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhh
Confidence 999988420 000 0 00001 11122456788889999999999987443 334455666666553
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.021 Score=40.72 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~ 81 (256)
.+....+|+|||+|.+.--+.+. |..-+|+|.-..
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E------Gy~G~GiD~R~R 91 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE------GYPGWGIDARRR 91 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC------CCCccccccccc
Confidence 35678999999999964333322 446788886544
|
; GO: 0008168 methyltransferase activity |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.12 Score=45.82 Aligned_cols=119 Identities=19% Similarity=0.194 Sum_probs=63.7
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc-hhhchhhhc-CCCc
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD-IASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d-~~~~~~~~~-~~~f 116 (256)
.++.+||..|||. |..++.+++..+ -.+++++|.+++..+.+++.. +... .....+ +.+...... ...+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g----~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLG----AERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCC
Confidence 4678999999877 777766666632 226999999999988887642 2211 111121 222222222 2369
Q ss_pred cEEEECCCCCCCC--CcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTP--EDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+..-.-.... -..... + .+.... .....+..+.+.|+++|+++.+..
T Consensus 256 D~vld~vg~~~~~~~~~~~~~---~-~~~~~~----~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQ---A-LLKLET----DRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CEEEECCCCcccccccccccc---c-cccccc----CchHHHHHHHHHhccCCEEEEEcC
Confidence 9997742100000 000000 0 000000 013457778889999999998653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.13 Score=41.85 Aligned_cols=125 Identities=19% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCC--C---ceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhc-----h-h
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVP--G---VQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASG-----L-E 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~--~---~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~-----~-~ 109 (256)
.-++|+|+|...|.++..+++.|-...+ + ..|+++|+.+=+ .++. --+++|+.+. . .
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHH
Confidence 3589999999999999999988754212 1 249999986532 1111 2334454432 2 2
Q ss_pred hhcCCCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025207 110 KRLAGLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
.+..++.|+|+|+-. +.+ +-++.+.+. ..+.+...+.-...+|||||.++--....+....+-..|..
T Consensus 110 hfggekAdlVvcDGA------PDvTGlHd~DEy~-----Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ 178 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGA------PDVTGLHDLDEYV-----QAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRK 178 (294)
T ss_pred HhCCCCccEEEeCCC------CCccccccHHHHH-----HHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHH
Confidence 334468999999632 111 111111110 01133444555677899999998754444444444444544
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.6 Score=37.74 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=54.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchh-hchhhhcCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIA-SGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~-~~~~~~~~~~fD~ 118 (256)
.-+.+++++|+.|..+..++.....+..+.++++|-.++......++.+...+... +|+.++.. +.+..+ ..+|+
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~--~~iDF 118 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL--KGIDF 118 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc--cCCCE
Confidence 56889999777654333333333333567899999999888888888887777643 78888744 444443 57899
Q ss_pred EEEC
Q 025207 119 MVVN 122 (256)
Q Consensus 119 Ii~n 122 (256)
++.+
T Consensus 119 ~vVD 122 (218)
T PF07279_consen 119 VVVD 122 (218)
T ss_pred EEEe
Confidence 9885
|
The function of this family is unknown. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.27 Score=40.88 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=69.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccC-CCceEEEEeCCH--------------------------HHHHHHHHHHHHc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEV-PGVQYIATDINP--------------------------YAVEVTRKTLEAH 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~-~~~~v~giD~~~--------------------------~~i~~a~~~~~~~ 93 (256)
.-++.|+|.||-.|..++.++..+.... ++-+++++|.=+ ...+..++|+...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 4678999999999987766655553321 344677777421 1233444444444
Q ss_pred CC---cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 94 NV---HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 94 ~~---~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++ +..++.|.+.+.++.....++-++-.+.=+ -......|+.++..|.|||+++
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-----------------------YesT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-----------------------YESTKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S-----------------------HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCCcccEEEECCcchhhhccCCCccEEEEEEeccc-----------------------hHHHHHHHHHHHhhcCCCeEEE
Confidence 43 237888998887765444555555443111 1234577888999999999999
Q ss_pred EEEeCCCC---HHHHHHHHHHcCCcEE
Q 025207 171 LVTLTAND---PSQICLQMMEKGYAAR 194 (256)
Q Consensus 171 ~~~~~~~~---~~~~~~~~~~~g~~~~ 194 (256)
+ ..+.. ...+.+.+.+.|....
T Consensus 210 ~--DDY~~~gcr~AvdeF~~~~gi~~~ 234 (248)
T PF05711_consen 210 F--DDYGHPGCRKAVDEFRAEHGITDP 234 (248)
T ss_dssp E--SSTTTHHHHHHHHHHHHHTT--S-
T ss_pred E--eCCCChHHHHHHHHHHHHcCCCCc
Confidence 8 33433 2244555566666543
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.35 Score=42.14 Aligned_cols=135 Identities=14% Similarity=0.099 Sum_probs=67.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHh----c--------ccCCCceEEEEeCCHHHHHHHHHHHHHcC-----Ccc---eEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALML----G--------QEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHA---DLI 100 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l----~--------~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~---~~~ 100 (256)
....+|+|+||.+|..++.+...+ . +..|..+|+--|+-.+-....=+.+..+. ... ..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 466899999999999888776643 1 12345789999976655544433333221 111 333
Q ss_pred EcchhhchhhhcCCCccEEEECCCCCCCCCc--cccccc----ch-hhhcC-CCCc----------HHHHHHHHHHHhhc
Q 025207 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPED--EVGREG----IA-SAWAG-GENG----------RAVIDKILPSADKL 162 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~--~~~~~~----~~-~~~~~-~~~~----------~~~~~~~l~~~~~~ 162 (256)
-+.+...+ +++++.|++++....+..+.. +..... .. ..+.. .... ...+..+|+.=.+-
T Consensus 95 pgSFy~rL--fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 95 PGSFYGRL--FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp ES-TTS----S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cchhhhcc--CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 44444332 236899999996555544431 111100 00 01111 0000 12345556655677
Q ss_pred cccCeEEEEEEeCCC
Q 025207 163 LSKRGWLYLVTLTAN 177 (256)
Q Consensus 163 LkpgG~l~~~~~~~~ 177 (256)
|+|||+++++..+..
T Consensus 173 Lv~GG~mvl~~~gr~ 187 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRD 187 (334)
T ss_dssp EEEEEEEEEEEEE-S
T ss_pred eccCcEEEEEEeecc
Confidence 999999999776443
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.81 Score=32.85 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=67.8
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEECCCCCCC
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~npP~~~~ 128 (256)
||.|.++..+++.|.+. +..++.+|.+++.++.+++. + ..++.+|..+.. ....-.+.|.+++.-+
T Consensus 4 ~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~----~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREE----G--VEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHT----T--SEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred EcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhc----c--cccccccchhhhHHhhcCccccCEEEEccC----
Confidence 78889999999988763 35899999999998877653 2 378889987653 2222357888887322
Q ss_pred CCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
.+.....+-...+-+.|...++.... ..+..+.++..|...
T Consensus 72 --------------------~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 72 --------------------DDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGADH 112 (116)
T ss_dssp --------------------SHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-SE
T ss_pred --------------------CHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcCE
Confidence 01122334444556777778776442 244567777777654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.11 Score=48.86 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=66.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH-HHcCC---------cceEEEcchhhchhhh--
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL-EAHNV---------HADLINTDIASGLEKR-- 111 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~-~~~~~---------~~~~~~~d~~~~~~~~-- 111 (256)
..|+=+|+|-|-+--...+.....+...+|+++|.++.++.....+. ....+ ..+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999865555554443345678999999966554444432 22233 1389999998874321
Q ss_pred -------cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc----CeE
Q 025207 112 -------LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK----RGW 168 (256)
Q Consensus 112 -------~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp----gG~ 168 (256)
.-+++|+||+- +.|.....+.....|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-------------------LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-------------------LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-------------------hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 01368999882 112111222356777777888876 776
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.02 Score=48.21 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=55.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+..|+|+-+|-|++++...-..+ ..+|+++|.+|.+++..+++++.|++.. .++.+|-....+ +.+.|-|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag----Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~---~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG----AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP---RLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC----ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc---cccchhe
Confidence 458999999999999984444322 3489999999999999999999987654 666666555432 3677777
Q ss_pred EE
Q 025207 120 VV 121 (256)
Q Consensus 120 i~ 121 (256)
..
T Consensus 267 nL 268 (351)
T KOG1227|consen 267 NL 268 (351)
T ss_pred ee
Confidence 65
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.49 Score=40.62 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=58.3
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
.++.+||..|+| .|..++.+++.. ++++++++.+++..+.+++ .+.+. ++.. +............+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-----G~~V~~~~~s~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-----GAAVIAVDIKEEKLELAKE----LGADE-VLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-----CCEEEEEcCCHHHHHHHHH----hCCCE-EEcCCCcCHHHHHHHhcCCCc
Confidence 467788887765 355555555542 4679999999988877654 23321 1111 11111111224579
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++..-. ....++.+.+.|+++|.++...
T Consensus 234 D~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVG---------------------------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEC
Confidence 99986311 1345777889999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.39 Score=41.22 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=66.2
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE----cchhhchhhh-c
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN----TDIASGLEKR-L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~----~d~~~~~~~~-~ 112 (256)
+.+.+||=+|+| .|..++..|+.++ ..+|+.+|+++..++.|++ + |.+. .... .++.+..... .
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~G----A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMG----ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcC----CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcc
Confidence 588999999999 4777777777743 4589999999999999988 3 4332 1111 1122222221 2
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+..+|+.+-.- ..+..++.....++.||.++++..
T Consensus 240 ~~~~d~~~dCs---------------------------G~~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 240 KKQPDVTFDCS---------------------------GAEVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred ccCCCeEEEcc---------------------------CchHHHHHHHHHhccCCEEEEecc
Confidence 24588887631 145567777889999999777553
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=93.98 E-value=1.4 Score=36.80 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=59.3
Q ss_pred HHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhh
Q 025207 62 LMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASA 141 (256)
Q Consensus 62 ~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~ 141 (256)
+.|.+.++..+|+|+|.++..++.|.+ .|+..... .+ .+.. ..+|+||..-|
T Consensus 3 ~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~~~-~~-~~~~-----~~~DlvvlavP----------------- 54 (258)
T PF02153_consen 3 LALRKAGPDVEVYGYDRDPETLEAALE----LGIIDEAS-TD-IEAV-----EDADLVVLAVP----------------- 54 (258)
T ss_dssp HHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSEEE-SH-HHHG-----GCCSEEEE-S------------------
T ss_pred HHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCeeecc-CC-HhHh-----cCCCEEEEcCC-----------------
Confidence 344444777899999999999887754 24332322 22 2221 35699987555
Q ss_pred hcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc---CCcEEEEEecCCC
Q 025207 142 WAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK---GYAARIVVQRSTE 202 (256)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~ 202 (256)
......+++++...+++|.++.=+.. ....+.+.+++. +....-.++-.+.
T Consensus 55 -------~~~~~~~l~~~~~~~~~~~iv~Dv~S---vK~~~~~~~~~~~~~~~~~v~~HPM~G~ 108 (258)
T PF02153_consen 55 -------VSAIEDVLEEIAPYLKPGAIVTDVGS---VKAPIVEAMERLLPEGVRFVGGHPMAGP 108 (258)
T ss_dssp -------HHHHHHHHHHHHCGS-TTSEEEE--S----CHHHHHHHHHHHTSSGEEEEEEESCST
T ss_pred -------HHHHHHHHHHhhhhcCCCcEEEEeCC---CCHHHHHHHHHhcCcccceeecCCCCCC
Confidence 23467889999999999987775433 234455555544 3355556655444
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.17 Score=44.33 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=66.3
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+.++.+|+|.+|-.|.-+..++..+. ....++|+|.+.+..+..++.+...|..+ ....+|+.....+..=.....
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~---n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMR---NQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhh---ccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeE
Confidence 36789999999999999988888764 35689999999999999999998888876 666888877522211245678
Q ss_pred EEECCCCC
Q 025207 119 MVVNPPYV 126 (256)
Q Consensus 119 Ii~npP~~ 126 (256)
|+++|+..
T Consensus 288 iL~DpscS 295 (413)
T KOG2360|consen 288 ILVDPSCS 295 (413)
T ss_pred EEeCCCCC
Confidence 88988764
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.2 Score=36.92 Aligned_cols=117 Identities=10% Similarity=0.144 Sum_probs=76.5
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEEEECCC
Q 025207 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~Ii~npP 124 (256)
|..-||+-.++ ..+.+ ++-++.++|+.|.-....++++. .+.+.++..+|....+... +.++=-+|+.+||
T Consensus 93 l~~YpGSP~lA----~~llR--~qDRl~l~ELHp~D~~~L~~~f~-~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPP 165 (279)
T COG2961 93 LRYYPGSPLLA----RQLLR--EQDRLVLTELHPSDAPLLRNNFA-GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPP 165 (279)
T ss_pred cccCCCCHHHH----HHHcc--hhceeeeeecCccHHHHHHHHhC-CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCC
Confidence 88899998863 33332 34589999999999999999886 2334488899977665432 2355789999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeCCC--CHHHHHHHHHHcCC
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLTAN--DPSQICLQMMEKGY 191 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~--~~~~~~~~~~~~g~ 191 (256)
|-... .++.+++.+.+.++ ++|+..+..|-.. ....+.+.++..+.
T Consensus 166 fE~~~---------------------eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 166 FELKD---------------------EYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGI 215 (279)
T ss_pred ccccc---------------------HHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCc
Confidence 94322 25666666666655 5777777666443 22234444444454
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.45 Score=35.08 Aligned_cols=67 Identities=28% Similarity=0.323 Sum_probs=34.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...+|+|+|-|.-.- +|+.|.+. +..|+++|+++. +.. .| .+++.-|+.++....- ...|+|.+
T Consensus 13 ~~~kiVEVGiG~~~~---vA~~L~~~--G~dV~~tDi~~~-------~a~-~g--~~~v~DDif~P~l~iY-~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPE---VAKKLKER--GFDVIATDINPR-------KAP-EG--VNFVVDDIFNPNLEIY-EGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--H---HHHHHHHH--S-EEEEE-SS-S------------S--TTEE---SSS--HHHH-TTEEEEEE
T ss_pred CCCcEEEECcCCCHH---HHHHHHHc--CCcEEEEECccc-------ccc-cC--cceeeecccCCCHHHh-cCCcEEEE
Confidence 446999999998764 34444432 479999999998 111 22 2688888888654422 46899997
Q ss_pred -CCC
Q 025207 122 -NPP 124 (256)
Q Consensus 122 -npP 124 (256)
+||
T Consensus 77 iRPP 80 (127)
T PF03686_consen 77 IRPP 80 (127)
T ss_dssp ES--
T ss_pred eCCC
Confidence 555
|
; PDB: 2K4M_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.85 Score=42.07 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
.++.+|+=+|||. |..++..++.+ ++.|+++|.+++..+.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-----GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-----GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH
Confidence 4789999999995 55666666653 4589999999999888776
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.97 Score=39.27 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=57.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEE---EcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~f 116 (256)
.++.+||=.|| |.++..+.+.+... ++ .|+++|.+++..+.+++ .|.+. ++ ..++.+... ..+.+
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~~--G~~~Vi~~~~~~~~~~~a~~----lGa~~-vi~~~~~~~~~~~~--~~g~~ 236 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKTL--GAAEIVCADVSPRSLSLARE----MGADK-LVNPQNDDLDHYKA--EKGYF 236 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHH----cCCcE-EecCCcccHHHHhc--cCCCC
Confidence 36788888876 45554444443322 44 69999999998887765 24321 11 112222111 12358
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-... ....+..+.+.|++||+++++..
T Consensus 237 D~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSG---------------------------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 99876311 12346677789999999998653
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.1 Score=39.77 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCCEEEEecccccHHHHHHHHHh----cc-------cCCCceEEEEeCCHHHHHHHHHHHHHc--------------CCc
Q 025207 42 HPVLCMEVGCGSGYVITSLALML----GQ-------EVPGVQYIATDINPYAVEVTRKTLEAH--------------NVH 96 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l----~~-------~~~~~~v~giD~~~~~i~~a~~~~~~~--------------~~~ 96 (256)
...+|+|+|||+|..++.+...+ .+ ..|..+|+--|+-.+-....=+.+... +..
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 35799999999998776654432 11 235678888887655544433333210 000
Q ss_pred ceEEE---cchhhchhhhcCCCccEEEECCCCCCCCCcccccccc------h-hhhcCCCC----------cHHHHHHHH
Q 025207 97 ADLIN---TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGI------A-SAWAGGEN----------GRAVIDKIL 156 (256)
Q Consensus 97 ~~~~~---~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~------~-~~~~~~~~----------~~~~~~~~l 156 (256)
.-+.. +.+..- -++.++.+++.+..-.+..+.......+. . ..+..... ....+..+|
T Consensus 143 ~~f~~gvpGSFY~R--LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL 220 (386)
T PLN02668 143 SYFAAGVPGSFYRR--LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFL 220 (386)
T ss_pred ceEEEecCcccccc--ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 01111 222221 13457899998865544443311100000 0 00000000 011344556
Q ss_pred HHHhhccccCeEEEEEEeCC
Q 025207 157 PSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 157 ~~~~~~LkpgG~l~~~~~~~ 176 (256)
+.=.+-|+|||+++++..+.
T Consensus 221 ~~Ra~ELvpGG~mvl~~~Gr 240 (386)
T PLN02668 221 RARAQEMKRGGAMFLVCLGR 240 (386)
T ss_pred HHHHHHhccCcEEEEEEecC
Confidence 66677799999999977443
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.13 Score=43.30 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=46.9
Q ss_pred eeeccCCccccCCc----hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH
Q 025207 10 LVSSHPEVYEPCDD----SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84 (256)
Q Consensus 10 ~~~~~~~~~~p~~~----~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~ 84 (256)
-.++.|++|.=..- +..+++.+.+.+..--...+++|||+|||+|...+.+... ....+...|.+.+.++
T Consensus 80 ~sDl~p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~-----~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 80 HSDLVPGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK-----GAVSVHFQDFNAEVLR 153 (282)
T ss_pred ccccCCceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhh-----ccceeeeEecchhhee
Confidence 34556666553322 6777777765541111357899999999999988777665 1257888898888873
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=2.6 Score=37.43 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=65.6
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcce-EEEcchhhchhhhcCCCccEEEECC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHAD-LINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
+|+=++=.-|.++..++.. .+ . ...| +--.-...+.|+.+|+++.+ +...+..+.+ ++.+|+|+.-.
T Consensus 47 ~~~i~nd~fGal~~~l~~~----~~--~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~----~~~~d~vl~~~ 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEH----KP--Y-SIGD-SYISELATRENLRLNGIDESSVKFLDSTADY----PQQPGVVLIKV 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhC----CC--C-eeeh-HHHHHHHHHHHHHHcCCCcccceeecccccc----cCCCCEEEEEe
Confidence 7899999999998887743 23 1 1123 23334566889999988653 4444443332 35699999855
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
| +....++..+..+...|.+|+.++......
T Consensus 115 P----------------------K~~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 115 P----------------------KTLALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred C----------------------CCHHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 5 234457788899999999999987644433
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.97 Score=39.79 Aligned_cols=98 Identities=19% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
+++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.+. .....+..+.......+.+|
T Consensus 190 ~~g~~VlV~G~--G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 190 RPGQSVAVVGL--GGVGLSALLGAVA--AGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCC
Confidence 46778888876 4455444444332 245 69999999998887754 34321 11112222222222234689
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+-.-. ....+....+.|+++|+++++.
T Consensus 262 ~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 262 YAFEMAG---------------------------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEEc
Confidence 9986311 1245666778899999998754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.4 Score=38.29 Aligned_cols=96 Identities=14% Similarity=0.053 Sum_probs=56.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+||=+||| .+++.+.+.+.....+.+|+++|.+++.++.++. .+. ... .+ +. .. ...+|+|+
T Consensus 162 ~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~~~-~~--~~-~~--~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--TYL-ID--DI-PE--DLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--eee-hh--hh-hh--ccCCcEEE
Confidence 568899998864 4554443333221234589999999988887754 121 111 11 11 11 12489887
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-.-. +. .....+....++|++||+++++..
T Consensus 228 D~~G--------------------~~----~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 228 ECVG--------------------GR----GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ECCC--------------------CC----ccHHHHHHHHHhCcCCcEEEEEee
Confidence 6311 10 013457778889999999988653
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.73 Score=39.16 Aligned_cols=68 Identities=26% Similarity=0.398 Sum_probs=50.0
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
....|..-...+.+.++... ..++..|||+-+|+|..++++.+. +-.++|+|++++.++.+.+++...
T Consensus 200 ~~~hp~~~P~~l~~r~i~~~----s~~~diVlDpf~GsGtt~~aa~~~------~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 200 KKLHPAQKPLALIERLIRDY----SFPGDIVLDPFAGSGTTGIAAKNL------GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred ccCCCCCChHHHHHHHHHhc----CCCCCEEeecCCCCChHHHHHHHc------CCceEEEecCHHHHHHHHHHHHhh
Confidence 33444444455555555543 368999999999999988766554 347999999999999999988754
|
|
| >KOG3350 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.72 E-value=3.5 Score=32.34 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=57.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcc-cCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQ-EVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~-~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD 117 (256)
+.+.+|-=+.|-+=.+ -+.... ..|.-+|+.+|.+... ...|. +|+.=|...+. +....+.||
T Consensus 72 ~e~~rIacvS~Psly~----y~k~re~~~~~~~v~lfEfDkRF--------e~yg~--eFvfYDyN~p~dlp~~lk~~fd 137 (217)
T KOG3350|consen 72 GEGSRIACVSCPSLYV----YQKKREIEIPHDQVYLFEFDKRF--------ELYGT--EFVFYDYNCPLDLPDELKAHFD 137 (217)
T ss_pred ccCceEEEEeCchHHh----hhhhhhccCCceeEEEEEehhhH--------Hhccc--eeEEeccCCCCCCHHHHHhccc
Confidence 4566776666655331 222111 1356789999987543 23331 45555554442 333457899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++|||.... -+.+--..+..+++++-.+++++
T Consensus 138 iivaDPPfL~~e---------------------Cl~Kts~tik~L~r~~~kvilCt 172 (217)
T KOG3350|consen 138 IIVADPPFLSEE---------------------CLAKTSETIKRLQRNQKKVILCT 172 (217)
T ss_pred EEEeCCccccch---------------------hhhhhHHHHHHHhcCCceEEEec
Confidence 999999996321 23344555677778888888744
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.7 Score=44.94 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=81.1
Q ss_pred CccccCCchHHHHHHHHHhhcccc--------cCCCCEEEEecccccHHHHHHHHHh------cccCCCceEEEEeCCHH
Q 025207 16 EVYEPCDDSFALVDALLADRINLV--------EHHPVLCMEVGCGSGYVITSLALML------GQEVPGVQYIATDINPY 81 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~--------~~~~~~VLDlGcG~G~~~~~la~~l------~~~~~~~~v~giD~~~~ 81 (256)
=+|+| ...+|+|+..-..+. ...+.+|||+.+|||.+-..+...+ .+++.+ .+++.||---
T Consensus 815 IVyTP----iEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~-eLhA~eIvLL 889 (1518)
T COG4889 815 IVYTP----IEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQK-ELHAFEIVLL 889 (1518)
T ss_pred eeecc----hhHhhHHHHhcchHHHHHhCCCcccCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHh-hhhHHHHHHH
Confidence 36788 455565554433321 2467899999999999854444321 222332 5777777666
Q ss_pred HHHHHHHHHHHc-----C-Ccc--eEEEcchhhchh-----------------hhcCCCccEEEECCCCCCCCCcccc--
Q 025207 82 AVEVTRKTLEAH-----N-VHA--DLINTDIASGLE-----------------KRLAGLVDVMVVNPPYVPTPEDEVG-- 134 (256)
Q Consensus 82 ~i~~a~~~~~~~-----~-~~~--~~~~~d~~~~~~-----------------~~~~~~fD~Ii~npP~~~~~~~~~~-- 134 (256)
++-.|.-|+... | .++ .+...|-++... ....-.+-+|+.||||..-...+..
T Consensus 890 sYYIAaiNIe~t~~~~~gd~~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn 969 (1518)
T COG4889 890 SYYIAAINIEQTAQNRDGDLKNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNN 969 (1518)
T ss_pred HHHHHHhhHHHHhhhhcCCcccCCCceecchhhhhccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCccc
Confidence 655555555432 1 111 233333322221 0112347889999999765443321
Q ss_pred ----cccchh----hhcC-----CCC-cHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 135 ----REGIAS----AWAG-----GEN-GRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 135 ----~~~~~~----~~~~-----~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
++..+. .+.. ..+ -.+.+-+.++-....++.+|++-|+..+
T Consensus 970 ~nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyira~RwasDri~d~GVigFV~Ng 1024 (1518)
T COG4889 970 QNLSYPKLDKRVYESYGKNSTATNKNSLRDSYIRAIRWASDRIKDNGVIGFVVNG 1024 (1518)
T ss_pred cccccchHHHHHHHHHhccchhhcccchHHHHHHHHHHHhhhcccCceEEEEecC
Confidence 111111 1111 111 1123334445566789999999998753
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.55 Score=39.91 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=64.3
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccc--hhhhcC---CCCcHHH-HHHHHHHHhhccccCeEEEE
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGI--ASAWAG---GENGRAV-IDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~--~~~~~~---~~~~~~~-~~~~l~~~~~~LkpgG~l~~ 171 (256)
.+.++|..+.+....+.++|+++.+|||...-......... ...+.. ...-.+. ....+..+.++|+++|.+++
T Consensus 18 ~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~~~~~v 97 (302)
T COG0863 18 KIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVLKPGGSLYV 97 (302)
T ss_pred heecchHHHHHhhccccceeEEEcCCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHHhhheecCCCEEEE
Confidence 78889988877766667999999999998765411110000 000000 0000112 45667888999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCCcEE--EEEecC
Q 025207 172 VTLTANDPSQICLQMMEKGYAAR--IVVQRS 200 (256)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 200 (256)
... ......+...+++.||... .++.+.
T Consensus 98 ~~~-~~~~~~~~~~~~~~gf~~~~~iiw~k~ 127 (302)
T COG0863 98 IDP-FSNLARIEDIAKKLGFEILGKIIWKKP 127 (302)
T ss_pred ECC-chhhhHHHHHHHhCCCeEeeeEEEeCC
Confidence 654 4556677888888888753 344443
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.82 Score=36.27 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=60.8
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH---HHcCC---------cceEE-EcchhhchhhhcCCCccE
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL---EAHNV---------HADLI-NTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~---~~~~~---------~~~~~-~~d~~~~~~~~~~~~fD~ 118 (256)
|.|.+++.+|..+.+. +.+|+|+|++++.++...+-. .+.++ ..++. ..|..... ...|+
T Consensus 7 GlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai-----~~adv 79 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAI-----KDADV 79 (185)
T ss_dssp --STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHH-----HH-SE
T ss_pred CCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhh-----hccce
Confidence 6777777777777644 579999999999887664311 00010 01222 22333321 24688
Q ss_pred EEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe--CCCCHHHHHHHHHHcC
Q 025207 119 MVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL--TANDPSQICLQMMEKG 190 (256)
Q Consensus 119 Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~~g 190 (256)
++... |+.. .+......+...++.+.+.|+++-.+++-+- .......+..++++.+
T Consensus 80 ~~I~VpTP~~~----------------~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 80 VFICVPTPSDE----------------DGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp EEE----EBET----------------TTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred EEEecCCCccc----------------cCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 87643 3322 1112244578889999999999777666221 1222234566676654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.039 Score=42.08 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=20.7
Q ss_pred HHHHHHHhhccccCeEEEEEEeCCC
Q 025207 153 DKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 153 ~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
..+++.|++.|||||++-+..|...
T Consensus 66 ~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 66 TSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred HHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 4678999999999999998776543
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=91.85 E-value=3.6 Score=35.49 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=56.9
Q ss_pred CCEEEEecc--cccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCCc
Q 025207 43 PVLCMEVGC--GSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGLV 116 (256)
Q Consensus 43 ~~~VLDlGc--G~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~f 116 (256)
+.+||=.|+ |.|..++.+++.+ ++ +|++++.+++..+.+++. .|.+ .++. .++.+.........+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~-----G~~~Vi~~~~s~~~~~~~~~~---lGa~-~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLL-----GCSRVVGICGSDEKCQLLKSE---LGFD-AAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHHHh---cCCc-EEEECCCCCHHHHHHHHCCCCc
Confidence 378888775 4566666666652 45 799999888877766553 2433 2222 223232222223469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+.... ...+..+.+.|+++|+++.+.
T Consensus 226 d~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 226 DVYFDNVG----------------------------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred eEEEECCC----------------------------cHHHHHHHHHhccCCEEEEEe
Confidence 99986311 122466788999999998754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.3 Score=38.77 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=59.5
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.|..++.+++.+ ++++++++.+++..+.+++. .|.+ .++.. ++.+.......+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-----G~~Vi~~~~~~~k~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-----GCYVVGSAGSSQKVDLLKNK---LGFD-EAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEcCCHHHHHHHHHh---cCCC-EEEECCCcccHHHHHHHHCCC
Confidence 57789988887 3566666666652 56899999988877766532 2432 22221 232222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++-.- + ...+..+.+.|+++|+++++.
T Consensus 228 gvD~v~d~v------------------------G----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNV------------------------G----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECC------------------------C----HHHHHHHHHHhccCCEEEEEC
Confidence 689997631 1 134677788999999998754
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=91.60 E-value=5.9 Score=32.51 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=52.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCC
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAG 114 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~ 114 (256)
++++|=.| |+|.++..+++.+.++ +++|+.++.+++..+.+...+...+....++..|+.+... .. .-+
T Consensus 2 ~k~~lItG-as~giG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTG-AGQGIGFAIAKRLVED--GFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 35666666 5566777888877654 5689999988877766666655444344667777765421 11 125
Q ss_pred CccEEEECCCCC
Q 025207 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
++|.++.|..+.
T Consensus 79 ~id~vi~~ag~~ 90 (256)
T PRK08643 79 DLNVVVNNAGVA 90 (256)
T ss_pred CCCEEEECCCCC
Confidence 689999987553
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.51 E-value=4 Score=35.17 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=57.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcch--hhchhhhc-CCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDI--ASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~-~~~f 116 (256)
.++.+||=.|+ |.++..+.+.+... +++ |++++.+++..+.+++ .|.+ .++...- .+...... ...+
T Consensus 162 ~~g~~vlV~G~--G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~-~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 162 SGRDTVLVVGA--GPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGAD-FVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCC-EEEcCCcchHHHHHHHhCCCCC
Confidence 46788888875 55665555544432 456 9999999888777654 2332 2221110 11111211 2369
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-... -...+....+.|+++|+++++..
T Consensus 233 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 233 DVAIECSG---------------------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 99986321 12345666788999999987653
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.38 E-value=5.8 Score=32.23 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=53.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
..+++|=.| |+|.++..+++.+.++ +.+|++++.++...+...+.+...+....++.+|+.+... ... -
T Consensus 5 ~~k~vlItG-~sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITG-ASSGIGKATALAFAKA--GWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 456788888 4777888888887654 5689999998876665555554333334677788765421 110 1
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
++.|+++.+.-+.
T Consensus 82 ~~id~lv~~ag~~ 94 (241)
T PRK07454 82 GCPDVLINNAGMA 94 (241)
T ss_pred CCCCEEEECCCcc
Confidence 4689999887543
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.34 E-value=2.7 Score=34.48 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=57.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
.++.+||-.|+|+ |...+.+++. -+.++++++.+++..+.+++. +... .....+..........+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~-----~g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKA-----AGARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCC
Confidence 4778999999886 4444444443 246899999998877766442 2211 11111111111011235699
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++.+-. ....+..+.+.|+++|+++....
T Consensus 204 ~vi~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVG---------------------------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCC---------------------------CHHHHHHHHHhcccCCEEEEEcc
Confidence 9987422 11346667788999999987654
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.8 Score=35.94 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=61.0
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEEEECCC
Q 025207 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~Ii~npP 124 (256)
+..-.|+-.++. ..+ .++-+.+.+|+.+.-.+..++++... -...++..|..+.+... ...+=-+|+++||
T Consensus 62 l~~YPGSP~ia~---~ll---R~qDrl~l~ELHp~d~~~L~~~~~~~-~~v~v~~~DG~~~l~allPP~~rRglVLIDPp 134 (245)
T PF04378_consen 62 LRFYPGSPAIAA---RLL---REQDRLVLFELHPQDFEALKKNFRRD-RRVRVHHRDGYEGLKALLPPPERRGLVLIDPP 134 (245)
T ss_dssp --EEE-HHHHHH---HHS----TTSEEEEE--SHHHHHHHTTS--TT-S-EEEE-S-HHHHHHHH-S-TTS-EEEEE---
T ss_pred cCcCCCCHHHHH---HhC---CccceEEEEecCchHHHHHHHHhccC-CccEEEeCchhhhhhhhCCCCCCCeEEEECCC
Confidence 556666666532 222 23558999999999999998887642 23489999988765432 2355689999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeCCCC--HHHHHHHHHHcCCc
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLTAND--PSQICLQMMEKGYA 192 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~--~~~~~~~~~~~g~~ 192 (256)
|-...+ +..+...+...+| +.|++++..|-... ...+.+.+++.+..
T Consensus 135 YE~~~d---------------------y~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~ 185 (245)
T PF04378_consen 135 YEQKDD---------------------YQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIK 185 (245)
T ss_dssp --STTH---------------------HHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SS
T ss_pred CCCchH---------------------HHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCC
Confidence 943221 4555555555555 57877776764432 23444555555543
|
; PDB: 2OO3_A. |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.04 E-value=7.3 Score=31.98 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~--~~ 113 (256)
.+++||=.| |+|.++..+++.+.++ ++.++.++-++...+.+...+...+....++..|+.+... . . .-
T Consensus 10 ~~k~vlVtG-~s~gIG~~la~~l~~~--G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 10 DGKCAIITG-AGAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 468899999 4566677777776644 5689889988777766655554433334566777665421 0 0 12
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|.++.+..+
T Consensus 87 ~~~d~li~~ag~ 98 (255)
T PRK06113 87 GKVDILVNNAGG 98 (255)
T ss_pred CCCCEEEECCCC
Confidence 568999998754
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=6.2 Score=31.91 Aligned_cols=125 Identities=16% Similarity=0.098 Sum_probs=67.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|++ |.++..+++.+.++ +++|++++-+++..+.+.+.+...+ ...++..|+.+... .. .-
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKE--GAQVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45788888875 66677777777643 6689999998877665544443322 23566777664321 00 01
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.+|.++.+..-......... ......+... ......+++.+.+.++++|.++++..
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~-~~~~~~~~~n---~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEF-SGLEEMLTNH---IKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHH-HHHHHHHHHh---chHHHHHHHHHHHHHhcCCEEEEEec
Confidence 457988887643221110000 0000001000 00122345566667778888777553
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=90.84 E-value=3 Score=36.42 Aligned_cols=98 Identities=19% Similarity=0.145 Sum_probs=57.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEE---EcchhhchhhhcC-CC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRLA-GL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~~-~~ 115 (256)
.++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.+ .++ ..+..+....... ..
T Consensus 175 ~~g~~VlV~G~--g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 175 KRGDSVAVIGC--GGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWARE----FGAT-HTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cCCc-eEEcCCCcCHHHHHHHHhCCCC
Confidence 46788998876 4455444443332 245 59999999998887754 3332 222 1222222222212 35
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+|+-.-- -...+....+.+++||+++++..
T Consensus 246 ~d~vid~~g---------------------------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 246 ADVVIDAVG---------------------------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhccCCEEEEECC
Confidence 898876210 12345667778999999988643
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.80 E-value=5.9 Score=33.62 Aligned_cols=111 Identities=20% Similarity=0.151 Sum_probs=70.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.+|+=+| .|.++-.+++.+.+++....+++.|.+....+.+.. .++..+......... ....|+|+..-
T Consensus 4 ~~v~IvG--~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d~~~~~~~~~~-----~~~aD~Vivav 72 (279)
T COG0287 4 MKVGIVG--LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVIDELTVAGLAEA-----AAEADLVIVAV 72 (279)
T ss_pred cEEEEEC--CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcccccccchhhhh-----cccCCEEEEec
Confidence 3455555 667777788888777777788999999888776653 222212111111111 24589998866
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
|. .....+++++...|++|-.+.= ..+....+.+.+.++.-.
T Consensus 73 Pi------------------------~~~~~~l~~l~~~l~~g~iv~D---v~S~K~~v~~a~~~~~~~ 114 (279)
T COG0287 73 PI------------------------EATEEVLKELAPHLKKGAIVTD---VGSVKSSVVEAMEKYLPG 114 (279)
T ss_pred cH------------------------HHHHHHHHHhcccCCCCCEEEe---cccccHHHHHHHHHhccC
Confidence 53 2367888888888899877663 234456777777776533
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.55 Score=39.00 Aligned_cols=53 Identities=25% Similarity=0.301 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
.++++|.+.++. .+..+++|+.||+|.+++.+.. +...++.-|+++..+...+
T Consensus 7 ~l~~~I~~~ip~---~~~~~~vepF~G~g~V~~~~~~------~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELIPK---NKHKTYVEPFAGGGSVFLNLKQ------PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC---------SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHcCC---CCCCEEEEEecchhHHHHHhcc------cccceeeeechHHHHHHHH
Confidence 456777777642 1789999999999998655443 2458999999998876665
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.75 E-value=6.7 Score=32.95 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=50.2
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|+++ +.++.++++.+.+. +++|+.++.++...+.+++.....+.. .++..|+.+... .. .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQ--GAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 467888888863 56777788877654 568888888754333333332332322 456667665421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-+.
T Consensus 81 ~g~iDilVnnAG~~ 94 (274)
T PRK08415 81 LGKIDFIVHSVAFA 94 (274)
T ss_pred cCCCCEEEECCccC
Confidence 26799999987654
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=90.73 E-value=5 Score=36.67 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+++|+=+|+| .++..+++.+. .-+++|+++|.++.....+.. .+. .+ .++.+.. ...|+|++
T Consensus 253 aGKtVvViGyG--~IGr~vA~~ak--a~Ga~VIV~e~dp~r~~eA~~----~G~--~v--v~leEal-----~~ADVVI~ 315 (477)
T PLN02494 253 AGKVAVICGYG--DVGKGCAAAMK--AAGARVIVTEIDPICALQALM----EGY--QV--LTLEDVV-----SEADIFVT 315 (477)
T ss_pred CCCEEEEECCC--HHHHHHHHHHH--HCCCEEEEEeCCchhhHHHHh----cCC--ee--ccHHHHH-----hhCCEEEE
Confidence 67899999888 45555666654 236789999999865433322 122 12 1332322 35799988
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
...- ..-+.......+|+||+++.+..
T Consensus 316 tTGt--------------------------~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 316 TTGN--------------------------KDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCCC--------------------------ccchHHHHHhcCCCCCEEEEcCC
Confidence 4220 11223667778999999998654
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.71 E-value=3.2 Score=34.94 Aligned_cols=97 Identities=19% Similarity=0.103 Sum_probs=56.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEE-cchhhchhhh-cCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLIN-TDIASGLEKR-LAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~-~d~~~~~~~~-~~~~fD 117 (256)
.++.+||=.|+ |.++..+++.+... ++. |+++|.+++..+.+++ .+.+. ++. .+..+..... ....+|
T Consensus 119 ~~g~~VlV~G~--G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~-~i~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 119 LKGRRVLVVGA--GMLGLTAAAAAAAA--GAARVVAADPSPDRRELALS----FGATA-LAEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----cCCcE-ecCchhhHHHHHHHhCCCCCC
Confidence 46788888876 45555555443322 444 8999999888777655 23321 111 1111111111 123589
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++-.-. ....+..+.+.|+++|+++++.
T Consensus 190 ~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSG---------------------------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCC---------------------------ChHHHHHHHHHhcCCCEEEEec
Confidence 9876311 1345677788999999999865
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.50 E-value=1.2 Score=39.33 Aligned_cols=123 Identities=18% Similarity=0.251 Sum_probs=64.6
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH---HcCCcc---eEEE-cchhhchhhhcCCCccEEEEC-C
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE---AHNVHA---DLIN-TDIASGLEKRLAGLVDVMVVN-P 123 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~---~~~~~~---~~~~-~d~~~~~~~~~~~~fD~Ii~n-p 123 (256)
|-|++++.+|.+..++ |..|+|+||++..++....--. +..+.. ..+. +.+........-...|+++.. |
T Consensus 16 GLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~iI~VP 93 (436)
T COG0677 16 GLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFIICVP 93 (436)
T ss_pred ccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEEEEec
Confidence 5677777777776643 5689999999999887543110 000000 0111 111111111111356776543 3
Q ss_pred -CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe--CCCCHHHHHHHHHH-cCCc
Q 025207 124 -PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL--TANDPSQICLQMME-KGYA 192 (256)
Q Consensus 124 -P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~-~g~~ 192 (256)
|+.. +++++ +....+..+.+.+.|++|-.+++-+- +....+.+.-.++. -|+.
T Consensus 94 TPl~~-------~~~pD---------ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~ 150 (436)
T COG0677 94 TPLKK-------YREPD---------LSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK 150 (436)
T ss_pred CCcCC-------CCCCC---------hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc
Confidence 3322 12222 34578889999999999998888432 23333334444444 3444
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=5.7 Score=36.32 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=63.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|+=+|+|. ++..+++.+.. .+++|+.+|.++.....+.. .|. . ..++.+.. ...|+|+
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~a--~Ga~ViV~e~dp~~a~~A~~----~G~--~--~~~leell-----~~ADIVI 314 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALRG--FGARVVVTEIDPICALQAAM----EGY--Q--VVTLEDVV-----ETADIFV 314 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHH--CCCEEEEEeCCchhHHHHHh----cCc--e--eccHHHHH-----hcCCEEE
Confidence 3789999999885 66667777653 46789999998775433322 232 1 22333322 3689999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHH-HHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKIL-PSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
+... ...++ ......+|||++++-+... ..+.....+...+
T Consensus 315 ~atG---------------------------t~~iI~~e~~~~MKpGAiLINvGr~--d~Ei~i~aL~~~~ 356 (476)
T PTZ00075 315 TATG---------------------------NKDIITLEHMRRMKNNAIVGNIGHF--DNEIQVAELEAYP 356 (476)
T ss_pred ECCC---------------------------cccccCHHHHhccCCCcEEEEcCCC--chHHhHHHHHhcC
Confidence 8521 12234 3567789999999985443 2233334455443
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=6.3 Score=32.61 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=49.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.| |+|.++..+++.+.++ +++|+.++.+++..+...+.+ +....++..|+.+... .. .-
T Consensus 5 ~~k~vlItG-as~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 5 AGKVAIVTG-GATLIGAAVARALVAA--GARVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 457788777 4556777788877654 568999998876554433322 3233567777765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+++.|..+.
T Consensus 79 g~id~lv~~ag~~ 91 (261)
T PRK08265 79 GRVDILVNLACTY 91 (261)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987543
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.16 E-value=2.1 Score=36.64 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=51.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+||=+||| .+++.+.+.+.. . ++ .|.++|.+++.++.+... . ++ |..+. ....+|+|+
T Consensus 144 ~~~~vlV~G~G--~vG~~a~q~ak~-~-G~~~v~~~~~~~~rl~~a~~~----~----~i--~~~~~----~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHG--TLGRLLARLTKA-A-GGSPPAVWETNPRRRDGATGY----E----VL--DPEKD----PRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCC--HHHHHHHHHHHH-c-CCceEEEeCCCHHHHHhhhhc----c----cc--Chhhc----cCCCCCEEE
Confidence 46678877764 444444443332 2 34 477889888777665431 1 11 11110 124689998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-.-. -...+..+.+.|+++|+++++..
T Consensus 206 d~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 206 DASG---------------------------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ECCC---------------------------CHHHHHHHHHhhhcCcEEEEEee
Confidence 7421 13456777889999999998653
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.12 E-value=1.1 Score=40.42 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=76.3
Q ss_pred HHHHHHHHhhcc-cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEc
Q 025207 26 ALVDALLADRIN-LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINT 102 (256)
Q Consensus 26 ~l~~~l~~~~~~-~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~ 102 (256)
..+-.+..++.. .+...+..++|+|.|.|.-.-.+... -+ ...-.++.||-+..|.+....+... +-.+ .++..
T Consensus 183 a~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~l-wr-~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~ 259 (491)
T KOG2539|consen 183 ALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLL-WR-QTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRK 259 (491)
T ss_pred HHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhh-cc-cccceeEeeccchHHHHHHHHhhcC-hhhcCchhccc
Confidence 333444444443 23456788999998877643333332 11 1124699999999999988877653 1111 11111
Q ss_pred -chhhchhhh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH
Q 025207 103 -DIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180 (256)
Q Consensus 103 -d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 180 (256)
.+.....+. ....||+|++..-..+..+. ..-......-+.+...+||.++++..+....-
T Consensus 260 ~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~-----------------~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~ 322 (491)
T KOG2539|consen 260 LVFHRQRLPIDIKNGYDLVICAHKLHELGSK-----------------FSRLDVPESLWRKTDRSGYFLVIIEKGTTMGL 322 (491)
T ss_pred cchhcccCCCCcccceeeEEeeeeeeccCCc-----------------hhhhhhhHHHHHhccCCCceEEEEecCCccch
Confidence 122222222 23459999996443332221 11122334446677899999999888766554
Q ss_pred HHH
Q 025207 181 QIC 183 (256)
Q Consensus 181 ~~~ 183 (256)
+..
T Consensus 323 e~l 325 (491)
T KOG2539|consen 323 ELL 325 (491)
T ss_pred hhH
Confidence 433
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=3.8 Score=34.82 Aligned_cols=126 Identities=10% Similarity=0.046 Sum_probs=65.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH--HHHHHHHHHHHcCCcceEEEcchhhchh--hh------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY--AVEVTRKTLEAHNVHADLINTDIASGLE--KR------ 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~--~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------ 111 (256)
.+++||=.| |+|.++..+++.+.++ +++|+.+..+.+ ..+...+.+...+....++..|+.+... ..
T Consensus 54 ~~k~vlITG-as~gIG~~~a~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITG-ADSGIGRATAIAFARE--GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEec-CCCcHHHHHHHHHHHc--CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 457888888 4666677788877654 557777665432 2333333333334444667777765321 11
Q ss_pred cCCCccEEEECCCCCCCCC--cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 112 LAGLVDVMVVNPPYVPTPE--DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-+.+|++|.|.-+..... .+....+....+... ..-...+++.+.+.++++|.++++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N---~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTN---VYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHH---hHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 1247899999875432111 010000111111000 0012244566677778888887754
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.79 E-value=1.9 Score=38.11 Aligned_cols=97 Identities=22% Similarity=0.188 Sum_probs=57.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.++..+++.+... ++ .|+++|.+++..+.+++ .|.+ .++.. ++.+.......+
T Consensus 197 ~~g~~VlV~G~--G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~-~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 197 QAGSSVAIFGL--GAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGIT-DFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCc-EEEecccccchHHHHHHHHhCC
Confidence 57788998876 55555555544332 45 69999999998887754 3432 22221 122222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
.+|+|+-.-- -...+......+++| |+++++.
T Consensus 268 g~dvvid~~G---------------------------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 268 GVDYSFECAG---------------------------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 6999976311 124566677788886 9987754
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=89.72 E-value=3.6 Score=35.84 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=54.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC---CHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI---NPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~---~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~f 116 (256)
.++.+||=.|+| .++..+.+.+.. .++++++++. ++...+.+++ .|... .....+..+ . . ....+
T Consensus 171 ~~g~~vlI~G~G--~vG~~a~q~ak~--~G~~vi~~~~~~~~~~~~~~~~~----~Ga~~v~~~~~~~~~-~-~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAG--PIGLLAALLLRL--RGFEVYVLNRRDPPDPKADIVEE----LGATYVNSSKTPVAE-V-K-LVGEF 239 (355)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHH----cCCEEecCCccchhh-h-h-hcCCC
Confidence 467889888864 444444444332 2458999986 5666666543 33321 000111111 1 1 12468
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-.-. ....+....+.|++||+++++..
T Consensus 240 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATG---------------------------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcC---------------------------CHHHHHHHHHHccCCcEEEEEec
Confidence 98877321 12356778889999999987553
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=89.70 E-value=2 Score=35.16 Aligned_cols=118 Identities=22% Similarity=0.266 Sum_probs=65.6
Q ss_pred ccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCCcceEEEcchhhchh---------hhcCCCccE
Q 025207 50 GCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNVHADLINTDIASGLE---------KRLAGLVDV 118 (256)
Q Consensus 50 GcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~~~~~~~~d~~~~~~---------~~~~~~fD~ 118 (256)
|+| ++.++..+++.+.++ +++|+.++.+++..+...+.+.. .+ .+++..|+.+... ....+++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~--Ga~V~~~~~~~~~~~~~~~~l~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEE--GANVILTDRNEEKLADALEELAKEYG--AEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHT--TEEEEEEESSHHHHHHHHHHHHHHTT--SEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHHHcC--CceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 455 456677778877654 67999999999976444444433 33 3468888754321 111278999
Q ss_pred EEECCCCCCCC----C-cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTP----E-DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|.|..+.... + .+....+-...+.. .......+.+.+.++++++|.++++..
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gsii~iss 134 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDI---NVFSPFLLAQAALPLMKKGGSIINISS 134 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCCCcccccc
Confidence 99876544331 1 01000000101100 011233445666778999999888653
|
... |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=89.59 E-value=4.6 Score=34.45 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=57.9
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 115 (256)
.++.+||=.|. |.|..++.+++.+ ++++++++.+++..+.+++ .|.+ .++. .++.+.........
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-----G~~vi~~~~s~~~~~~l~~----~Ga~-~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK-----GCKVIGCAGSDDKVAWLKE----LGFD-AVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCccHHHHHHHHCCCC
Confidence 46778877763 4555666666652 5689999988887777654 3432 2222 22222222222346
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-.- -...+....+.|+++|+++.+.
T Consensus 212 vd~vld~~----------------------------g~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 212 IDCYFDNV----------------------------GGEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred cEEEEECC----------------------------CHHHHHHHHHhhccCCEEEEEc
Confidence 89887521 0234677788999999998753
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.59 E-value=8.3 Score=31.61 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=54.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.++.+++..+...+.+...+....++..|+.+... .. .-
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEA--GAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56888888865 45567777777654 5689999998887777666665444333566777654321 10 11
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|....
T Consensus 85 g~id~lv~~ag~~ 97 (253)
T PRK05867 85 GGIDIAVCNAGII 97 (253)
T ss_pred CCCCEEEECCCCC
Confidence 5799999987554
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.94 Score=34.49 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=28.1
Q ss_pred Eeccccc--HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH--HHHcC
Q 025207 48 EVGCGSG--YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT--LEAHN 94 (256)
Q Consensus 48 DlGcG~G--~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~--~~~~~ 94 (256)
|+|+..| .....+... ...++..++++|.+|..++..+++ +..+.
T Consensus 1 DvGA~~G~~~~~~~~~~~--~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEK--KCGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHH--HTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHH--HcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 8999999 544433211 125678999999999999999999 66653
|
; PDB: 2PY6_A. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=89.47 E-value=5.6 Score=34.05 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~ 114 (256)
.++.+||=.|. |.|..++.+++. .++++++++.+++..+.+++ .|.+ .++.. +..+.......+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~-----~G~~Vi~~~~s~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKL-----KGCKVVGAAGSDEKVAYLKK----LGFD-VAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHH----cCCC-EEEeccccccHHHHHHHhCCC
Confidence 46788887774 355555555554 25689999988887777643 3442 22221 122222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-... ...+....+.|+++|+++.+.
T Consensus 207 gvdvv~d~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 207 GYDCYFDNVG----------------------------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CeEEEEECCC----------------------------HHHHHHHHHHhCcCcEEEEec
Confidence 6899976311 123567788999999999754
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=88.86 E-value=3.9 Score=29.66 Aligned_cols=65 Identities=23% Similarity=0.154 Sum_probs=44.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
..++|+|+|-|-=.- +++.|.++ ++.++++|+++.. +. ...++...|+.++.... =...|+|.+
T Consensus 13 ~~gkVvEVGiG~~~~---VA~~L~e~--g~dv~atDI~~~~---a~-------~g~~~v~DDitnP~~~i-Y~~A~lIYS 76 (129)
T COG1255 13 ARGKVVEVGIGFFLD---VAKRLAER--GFDVLATDINEKT---AP-------EGLRFVVDDITNPNISI-YEGADLIYS 76 (129)
T ss_pred cCCcEEEEccchHHH---HHHHHHHc--CCcEEEEeccccc---Cc-------ccceEEEccCCCccHHH-hhCccceee
Confidence 346999999886543 56666654 4789999999881 11 12378888988875432 145799987
Q ss_pred C
Q 025207 122 N 122 (256)
Q Consensus 122 n 122 (256)
-
T Consensus 77 i 77 (129)
T COG1255 77 I 77 (129)
T ss_pred c
Confidence 3
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=88.86 E-value=2.7 Score=37.17 Aligned_cols=97 Identities=25% Similarity=0.193 Sum_probs=56.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+.+.+... ++ .|+++|.+++..+.+++ .|.+ .++.. +..........+
T Consensus 192 ~~g~~VlV~G~--G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~----lGa~-~~i~~~~~~~~~~~~v~~~~~~ 262 (378)
T PLN02827 192 SKGSSVVIFGL--GTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKT----FGVT-DFINPNDLSEPIQQVIKRMTGG 262 (378)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH----cCCc-EEEcccccchHHHHHHHHHhCC
Confidence 46889998875 45555555443322 34 58899998887777644 3432 22211 222222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
.+|+|+-.-- ....+..+.+.|++| |+++++.
T Consensus 263 g~d~vid~~G---------------------------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 263 GADYSFECVG---------------------------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhhccCCCEEEEEC
Confidence 6899976311 123466677789998 9998754
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=88.76 E-value=5.9 Score=35.43 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=31.1
Q ss_pred CCCCEEEEecc-c-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 41 HHPVLCMEVGC-G-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 41 ~~~~~VLDlGc-G-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
+++.+|+=+|+ | .|..++.+++.++ ....+|+++|.+++.++.+++.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G--~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGP--IGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcc--cCCceEEEEcCCHHHHHHHHHh
Confidence 46778887763 3 5555555555421 0113799999999999988774
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >KOG4174 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.67 E-value=3.7 Score=34.11 Aligned_cols=143 Identities=17% Similarity=0.061 Sum_probs=80.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH------HHHHHHH---HcCCcceEEEcchhhchh--h
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE------VTRKTLE---AHNVHADLINTDIASGLE--K 110 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~------~a~~~~~---~~~~~~~~~~~d~~~~~~--~ 110 (256)
...+||.+|=|.=.++..++..+++.- ..++++.++..-.+ -++.|+. .+|.. -++..|+..... .
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa--~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~-I~h~Vdv~sl~~~~~ 132 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSA--GNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT-ILHGVDVTSLKFHAD 132 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccc--cceeeeeccchhhhhhhcccchHHHHHHHHHcCCc-eEecccceeEEeccc
Confidence 457899999999998888888876432 35666555544422 2344443 33432 233334443322 3
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc-cCeEEEEEEeC-CCCH-HHHHHHHH
Q 025207 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS-KRGWLYLVTLT-ANDP-SQICLQMM 187 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~-~~~~-~~~~~~~~ 187 (256)
+.-++||-||.|.|+.-..-. ++.+.-.+. ........+++.+..+|+ ..|.+++.... .... -.+..+.+
T Consensus 133 ~~~~~~d~IiFNFPH~G~g~~----~e~d~~~i~--~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~Lak 206 (282)
T KOG4174|consen 133 LRLQRYDNIIFNFPHSGKGIK----FEQDRNIIP--LHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKFLAK 206 (282)
T ss_pred ccccccceEEEcCCCCCCCcc----cccchHHHH--HHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhHhhh
Confidence 334789999999887432211 111110000 123456788999999999 77998885432 2222 23444445
Q ss_pred HcCCcE
Q 025207 188 EKGYAA 193 (256)
Q Consensus 188 ~~g~~~ 193 (256)
+.|+..
T Consensus 207 ~~gl~L 212 (282)
T KOG4174|consen 207 EFGLTL 212 (282)
T ss_pred hccccc
Confidence 555543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=12 Score=30.46 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=62.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-HHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-YAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~-~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.++++|=.|+ +|.++..+++.+.+. +.+|++++-+. ...+.....+...+....++..|+.+... ...
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGA--GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHC--CCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4578888885 455677777776543 56888877653 23333333333333333567777665421 111
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+.+|+++.|......... .....+.. .......+++.+.+.++.+|+++++.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~-----~~~~~~~v---n~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 82 FGGLDALVLNASGGMESGM-----DEDYAMRL---NRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCCcEEEECCCCCCCCCC-----CcceeeEe---eeHHHHHHHHHHHhhccCCceEEEEe
Confidence 1468999987643221110 00000000 01123455666777666677766654
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=7.2 Score=33.00 Aligned_cols=126 Identities=13% Similarity=0.180 Sum_probs=65.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-HHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-YAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~-~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
++++||=.|+ +|.++..+++.+.++ +++|+.++.++ ...+.....+...+....++..|+.+... ...
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4577888885 566677777777654 56888888764 23333334444334344667777654321 111
Q ss_pred CCCccEEEECCCCCCCCCc--ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYVPTPED--EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+.+|++|.+......... +....+....+.. .......+++.+.+.++++|.++++.
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~---N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKT---NIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhh---hhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1468999987654322110 0000000001100 01113344556666677778877755
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=88.41 E-value=4.2 Score=35.12 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=58.1
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.|..++.+++. .++++++++.+++..+.+++. .|.+ .++. .+..+........
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~-----~G~~Vi~~~~~~~~~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKL-----KGCYVVGSAGSDEKVDLLKNK---LGFD-DAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHHh---cCCc-eeEEcCCcccHHHHHHHhCCC
Confidence 57788988875 345555555554 256899999888877776652 2332 2222 1232222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-... ...+..+.+.|+++|+++.+.
T Consensus 221 gvd~v~d~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDNVG----------------------------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEECCC----------------------------HHHHHHHHHHhccCcEEEEec
Confidence 6899876310 134667788999999998754
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=12 Score=30.86 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=49.0
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCH---HHHHHHHHHHHHcCCcceEEEcchhhchh------hh
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINP---YAVEVTRKTLEAHNVHADLINTDIASGLE------KR 111 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~---~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~ 111 (256)
.++.+|=.|.++ +.++.++++.+.++ +++|+.++.+. +.++...+.+. +....++..|+.+... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~--G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNA--GAKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHHHH
Confidence 468899999874 77888888888754 56888776542 33333322211 2223566677654421 11
Q ss_pred --cCCCccEEEECCCCC
Q 025207 112 --LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 --~~~~fD~Ii~npP~~ 126 (256)
.-+++|+++.|.-+.
T Consensus 82 ~~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFA 98 (257)
T ss_pred HHhCCCccEEEECcccC
Confidence 126799999887553
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=12 Score=30.99 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=50.3
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|.++ +.++.++++.+.+. +++|+.++.++...+.+++.....+ ...++..|+.+... .. .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRAL--GAELAVTYLNDKARPYVEPLAEELD-APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEEeCChhhHHHHHHHHHhhc-cceEEecCcCCHHHHHHHHHHHHHH
Confidence 578899999887 47888888887654 5688888887654333333222222 12355666554321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|+++.|.-+.
T Consensus 86 ~g~ld~lv~nAg~~ 99 (258)
T PRK07533 86 WGRLDFLLHSIAFA 99 (258)
T ss_pred cCCCCEEEEcCccC
Confidence 26799999987543
|
|
| >TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component | Back alignment and domain information |
|---|
Probab=88.23 E-value=4.7 Score=28.16 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=35.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
++|| +.||+|.-+-. +++..++.++.+|++.++...+..+.... ...+|+|+.-|
T Consensus 4 ~~IL-l~C~~G~sSS~----------------------l~~k~~~~~~~~gi~~~v~a~~~~~~~~~--~~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSL----------------------LVNKMNKAAEEYGVPVKIAAGSYGAAGEK--LDDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHH----------------------HHHHHHHHHHHCCCcEEEEEecHHHHHhh--cCCCCEEEECc
Confidence 5666 78999964322 22344555566788777777777665322 24689999976
Q ss_pred C
Q 025207 124 P 124 (256)
Q Consensus 124 P 124 (256)
.
T Consensus 59 q 59 (95)
T TIGR00853 59 Q 59 (95)
T ss_pred h
Confidence 5
|
Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=88.22 E-value=0.23 Score=35.62 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhccccCeEEEEE
Q 025207 151 VIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 151 ~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
-+..++..+...|+|||++++-
T Consensus 22 Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 22 GLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCEEEEe
Confidence 3778999999999999999993
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.19 E-value=9.3 Score=32.43 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=29.4
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+|.=+|+| .++..++..+... +..|+.+|.+++.++.+++.+.
T Consensus 4 ~~I~ViGaG--~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSG--VMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECcc--HHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHH
Confidence 356666665 4554455555432 5689999999999987766544
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.17 E-value=1.2 Score=38.31 Aligned_cols=99 Identities=21% Similarity=0.182 Sum_probs=60.4
Q ss_pred CCCCEEEEecc-cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE--E-EcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGC-GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL--I-NTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGc-G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~--~-~~d~~~~~~~~~~~~f 116 (256)
.++++|-=+|. |-|.+++.+++.+ +.+|+++|-+...-+.+-+ ..|.+.-+ . ..|..+......++-.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAM-----G~rV~vis~~~~kkeea~~---~LGAd~fv~~~~d~d~~~~~~~~~dg~~ 251 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAM-----GMRVTVISTSSKKKEEAIK---SLGADVFVDSTEDPDIMKAIMKTTDGGI 251 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHh-----CcEEEEEeCCchhHHHHHH---hcCcceeEEecCCHHHHHHHHHhhcCcc
Confidence 36777766664 4789999999985 4689999988755554443 34444311 1 2333333333233444
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
|-+..- ....++.+..+||++|.++++.-+.
T Consensus 252 ~~v~~~-----------------------------a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 252 DTVSNL-----------------------------AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeeeec-----------------------------cccchHHHHHHhhcCCEEEEEeCcC
Confidence 544420 1344677788999999999976443
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=15 Score=31.48 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=53.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--CcceEEEcchhhchh------hh--
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~~~~~~d~~~~~~------~~-- 111 (256)
.+++++=.|++ |.++.++++.|.++ +++|+.+.-+++..+.+.+.+.... ....++..|+.+... ..
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAA--GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56788877765 55677778777654 5789999988877666665554332 233677778765421 11
Q ss_pred cCCCccEEEECCCCC
Q 025207 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
..+++|++|.|.-..
T Consensus 90 ~~~~iD~li~nAG~~ 104 (313)
T PRK05854 90 EGRPIHLLINNAGVM 104 (313)
T ss_pred hCCCccEEEECCccc
Confidence 125689999987543
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=88.07 E-value=9.3 Score=31.87 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=50.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.++++|=.| |+|.++.++++.+.++ +++|+.++.++...+...+.+. .+....++..|+.+... ... -
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~~--G~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHKH--GAKVCIVDLQDDLGQNVCDSLG-GEPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhc-CCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 467888888 5667788888877654 6789999988766554443332 12223677777765421 111 1
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|.+|.|.-.
T Consensus 93 g~id~li~~Ag~ 104 (280)
T PLN02253 93 GTLDIMVNNAGL 104 (280)
T ss_pred CCCCEEEECCCc
Confidence 578999987643
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=87.97 E-value=12 Score=31.29 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=61.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----cceEEEcchhhchhh-hcC---
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----HADLINTDIASGLEK-RLA--- 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----~~~~~~~d~~~~~~~-~~~--- 113 (256)
....|+.+|||-=.-. ..+.. .++..++=+|. |+.++.-++.+...+. ...++..|+.+.... ...
T Consensus 81 g~~qvV~LGaGlDTr~----~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gf 154 (260)
T TIGR00027 81 GIRQVVILGAGLDTRA----YRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGF 154 (260)
T ss_pred CCcEEEEeCCccccHH----HhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCC
Confidence 3568999999988743 23321 12455666663 6677776777766542 126777777532211 111
Q ss_pred --CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 114 --GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 114 --~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
...-++++--.+...+. .....++..+.+...||+.+++-..
T Consensus 155 d~~~ptl~i~EGvl~YL~~-------------------~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 155 DPTAPTAWLWEGLLMYLTE-------------------EAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCCCCeeeeecchhhcCCH-------------------HHHHHHHHHHHHhCCCCcEEEEEec
Confidence 22334444332222221 2367788888888779999988543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.96 E-value=16 Score=31.75 Aligned_cols=81 Identities=17% Similarity=0.118 Sum_probs=54.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|+.++-+++.++...+.+...+.+..++..|+.+... .. .-
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~--G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARR--GAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 4567777774 556677777777644 5689999999888777766666555455677777655421 10 12
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|.-.
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 579999987654
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.96 E-value=1.6 Score=38.48 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+-+.|+|+|.|-|.++.-++.. -+..|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~-----y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLG-----YGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhc-----cCceEEEeccchHHHHHHHH
Confidence 5589999999999976555443 36799999999877776654
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=13 Score=30.15 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=50.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhchh--hh---cCCCcc
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASGLE--KR---LAGLVD 117 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~~~--~~---~~~~fD 117 (256)
++|+=.| |+|.++..+++.+.++ +++|++++.++...+...+.+...+ ....++..|+.+... .. ....+|
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAA--GARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 4677777 5677788888887754 5689999998876655544443322 233677778765421 11 123579
Q ss_pred EEEECCCC
Q 025207 118 VMVVNPPY 125 (256)
Q Consensus 118 ~Ii~npP~ 125 (256)
.++.+..+
T Consensus 79 ~vv~~ag~ 86 (243)
T PRK07102 79 IVLIAVGT 86 (243)
T ss_pred EEEECCcC
Confidence 99987654
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=87.83 E-value=9.9 Score=35.63 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=45.0
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
||.|.++..+++.+.++ +..++.+|.+++.++.+++. ...++.+|..+.. .+..-++.|.+++
T Consensus 423 ~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred ECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 67777888888888654 45799999999988877642 2378899987753 2222357887765
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=19 Score=32.57 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=55.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+++|+=+|+|. ++..++..+.. -+++|+.+|.++.....+.. .|. ++ .++.+.. ..+|+|+.
T Consensus 211 ~Gk~VlViG~G~--IG~~vA~~lr~--~Ga~ViV~d~dp~ra~~A~~----~G~--~v--~~l~eal-----~~aDVVI~ 273 (425)
T PRK05476 211 AGKVVVVAGYGD--VGKGCAQRLRG--LGARVIVTEVDPICALQAAM----DGF--RV--MTMEEAA-----ELGDIFVT 273 (425)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHh--CCCEEEEEcCCchhhHHHHh----cCC--Ee--cCHHHHH-----hCCCEEEE
Confidence 688999999874 55556665553 36689999999876443322 132 22 1222221 36899987
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEEEe
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 174 (256)
... ...++. .....+|+|++++.+..
T Consensus 274 aTG---------------------------~~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 274 ATG---------------------------NKDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCC---------------------------CHHHHHHHHHhcCCCCCEEEEcCC
Confidence 321 123454 56778999999988654
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.78 E-value=12 Score=29.46 Aligned_cols=135 Identities=15% Similarity=0.215 Sum_probs=70.0
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--------CCcc--------eE-EEcchhhch
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--------NVHA--------DL-INTDIASGL 108 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--------~~~~--------~~-~~~d~~~~~ 108 (256)
|.=+|+ |..+..++..+.. .+..|+.+|.+++.++.+++.+... .+.. .+ ...|+.+.
T Consensus 2 V~ViGa--G~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~- 76 (180)
T PF02737_consen 2 VAVIGA--GTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA- 76 (180)
T ss_dssp EEEES---SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG-
T ss_pred EEEEcC--CHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH-
Confidence 334555 5555555555443 3679999999999999888876641 1110 11 22333222
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025207 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
...|+|+-..| .....-..++.++.+++.|+-++...+.+.. ..++...+
T Consensus 77 -----~~adlViEai~----------------------E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~-i~~la~~~-- 126 (180)
T PF02737_consen 77 -----VDADLVIEAIP----------------------EDLELKQELFAELDEICPPDTILASNTSSLS-ISELAAAL-- 126 (180)
T ss_dssp -----CTESEEEE-S-----------------------SSHHHHHHHHHHHHCCS-TTSEEEE--SSS--HHHHHTTS--
T ss_pred -----hhhheehhhcc----------------------ccHHHHHHHHHHHHHHhCCCceEEecCCCCC-HHHHHhcc--
Confidence 36799987543 2345567899999999999998887554333 33333332
Q ss_pred cCCcEEEEEecC-CCCccEEEEEEEecCc
Q 025207 189 KGYAARIVVQRS-TEEENLHIIKFWRDFD 216 (256)
Q Consensus 189 ~g~~~~~~~~~~-~~~~~~~l~~~~~~~~ 216 (256)
....+.+--.. .+....-+++......
T Consensus 127 -~~p~R~ig~Hf~~P~~~~~lVEvv~~~~ 154 (180)
T PF02737_consen 127 -SRPERFIGMHFFNPPHLMPLVEVVPGPK 154 (180)
T ss_dssp -STGGGEEEEEE-SSTTT--EEEEEE-TT
T ss_pred -CcCceEEEEecccccccCceEEEeCCCC
Confidence 22222222222 2233355666655444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.73 E-value=11 Score=31.91 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=55.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------CC-cc--------eEE-Ecchhh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------NV-HA--------DLI-NTDIAS 106 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~~-~~--------~~~-~~d~~~ 106 (256)
.+|.=+|+| .++..++..+.. .+..|+..|.+++.++.+.+.+..+ +. .. .+. ..+..
T Consensus 5 ~kI~vIGaG--~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 79 (292)
T PRK07530 5 KKVGVIGAG--QMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE- 79 (292)
T ss_pred CEEEEECCc--HHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-
Confidence 456666665 444445555443 3568999999999988766544322 21 10 111 12221
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
. -...|+|+..-| ........+++.+...++++.+++..+
T Consensus 80 ---~--~~~aD~Vieavp----------------------e~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 80 ---D--LADCDLVIEAAT----------------------EDETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred ---H--hcCCCEEEEcCc----------------------CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 1 146799987543 112234567778888889988766433
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=87.72 E-value=3.4 Score=35.92 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=30.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
.++.+||=.|+ |.++..+.+.+.. .+++++++|.+++..+.+++
T Consensus 165 ~~g~~VlV~G~--G~vG~~a~~~a~~--~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGA--GGVGGYMVQTAKA--MGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH
Confidence 56889999998 4444444443332 24589999999998887754
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.71 E-value=6 Score=33.58 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=48.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC--HHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN--PYAVEVTRKTLEAHNVHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~--~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~-- 111 (256)
.++++|=.|+ +|.++..+++.+.++ +++|+.++.+ .+..+...+.+...+....++..|+.+... ..
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~--G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYARE--GADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHC--CCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4578998885 566777788877754 5678877643 333444444444434334566777765321 10
Q ss_pred cCCCccEEEECCCC
Q 025207 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.-+.+|.++.|..+
T Consensus 125 ~~g~id~lv~~Ag~ 138 (294)
T PRK07985 125 ALGGLDIMALVAGK 138 (294)
T ss_pred HhCCCCEEEECCCC
Confidence 12568999987654
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=87.65 E-value=4.9 Score=31.12 Aligned_cols=135 Identities=17% Similarity=0.142 Sum_probs=69.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH-HHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT-RKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+++++=+|+..-.+-..+.+ ...+.|..+|.++--++.- +.++. .+...|+...... ..++||.+.|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~-----~GA~~iltveyn~L~i~~~~~dr~s------si~p~df~~~~~~-y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ-----HGAAKILTVEYNKLEIQEEFRDRLS------SILPVDFAKNWQK-YAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHH-----cCCceEEEEeecccccCcccccccc------cccHHHHHHHHHH-hhccchhhhe
Confidence 56777788776654333222 2345799999876443311 11111 3333444433322 2477999877
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH---------HHHHHHHHHcCCc
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP---------SQICLQMMEKGYA 192 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~~~~g~~ 192 (256)
-...-+..=. .+-++.. +.| -...+..+..+||+||.+++..|-.... ..++-.+.-.||+
T Consensus 70 ~~siEh~GLG--RYGDPid-----p~G---dl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe 139 (177)
T PF03269_consen 70 FSSIEHFGLG--RYGDPID-----PIG---DLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFE 139 (177)
T ss_pred echhcccccc--ccCCCCC-----ccc---cHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcE
Confidence 3222110000 0000000 011 2355777889999999999987744321 2334444456777
Q ss_pred EEEEEec
Q 025207 193 ARIVVQR 199 (256)
Q Consensus 193 ~~~~~~~ 199 (256)
+...+..
T Consensus 140 ~i~tfs~ 146 (177)
T PF03269_consen 140 WIDTFSG 146 (177)
T ss_pred EEeeecc
Confidence 7665543
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.58 E-value=7.8 Score=33.46 Aligned_cols=92 Identities=13% Similarity=0.027 Sum_probs=54.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+||=.|+| .++..+.+.... .++++++++.+++..+.+++ .|.+ .++.. .+. ..+.+|+++
T Consensus 164 ~~g~~VlV~G~g--~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~----~Ga~-~vi~~--~~~----~~~~~d~~i 228 (329)
T TIGR02822 164 PPGGRLGLYGFG--GSAHLTAQVALA--QGATVHVMTRGAAARRLALA----LGAA-SAGGA--YDT----PPEPLDAAI 228 (329)
T ss_pred CCCCEEEEEcCC--HHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----hCCc-eeccc--ccc----CcccceEEE
Confidence 578899988864 333333333222 25689999999888777665 3432 12211 111 123578765
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
..-. ....+....+.|++||+++++..
T Consensus 229 ~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 229 LFAP---------------------------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ECCC---------------------------cHHHHHHHHHhhCCCcEEEEEec
Confidence 4211 12357777889999999988653
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA | Back alignment and domain information |
|---|
Probab=87.56 E-value=3.5 Score=32.30 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=42.3
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEEEeCCCCHHHH-HHHHHHcCCcE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLVTLTANDPSQI-CLQMMEKGYAA 193 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~g~~~ 193 (256)
||+|+++||+........+. ....+.... .+.+.. .+.+++.++|.+++-..+ ....+. .+.|..-||+.
T Consensus 1 fdvI~~DPPW~~~~~~~~~~---~~~~Y~tm~----~~~i~~Lpv~~l~~~~~~lflWvTn-~~~~~~~~~l~~~WGf~~ 72 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGG---AEAHYPTMS----LDEIKSLPVPQLAAPGALLFLWVTN-SQLPEAKLELFPAWGFEY 72 (176)
T ss_pred CCEEEEeCCCCCcCcccccc---cccCCCccC----HHHHHhCCHHHhCCCCcEEEEEecc-chhhHHHHHHHHhCCCEE
Confidence 79999999998766543320 111111111 222222 256778888888885543 334455 88899989875
Q ss_pred E
Q 025207 194 R 194 (256)
Q Consensus 194 ~ 194 (256)
.
T Consensus 73 ~ 73 (176)
T PF05063_consen 73 V 73 (176)
T ss_pred E
Confidence 3
|
It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=87.41 E-value=7.6 Score=36.78 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=46.2
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEEC
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVN 122 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~n 122 (256)
||.|.++..+++.+.+. +..++.+|.|++.++.+++. + ..++.+|..+.. ....-++.|++++.
T Consensus 406 ~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~----g--~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 406 VGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKY----G--YKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred ecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhC----C--CeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 67788888888887643 55899999999999887642 2 378889987652 22223578888873
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=87.28 E-value=7.5 Score=33.47 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=54.7
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEE---Ecchhhchhhh-cCC
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~-~~~ 114 (256)
.++.+||-.|+| .|..++.+++.+ + ..+++++.++...+.+++. +.. .++ ..++.+..... ...
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~-----g~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLL-----GAARIIAVDSNPERLDLAKEA----GAT-DIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEeCCHHHHHHHHHh----CCc-EEEcCCcchHHHHHHHHcCCC
Confidence 467788887654 345555555542 3 2788888888777665542 321 222 12222222221 125
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++..-. -...+....+.|+++|+++...
T Consensus 236 ~~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 236 GVDCVIEAVG---------------------------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCcEEEEccC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 6999876311 1135677788999999988653
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.89 E-value=13 Score=30.76 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=47.1
Q ss_pred CCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G-~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|++.| .++.++++.+.++ +++|+..+.++...+.+++.....+.. .++..|+.+... .. .
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~--G~~v~~~~r~~~~~~~~~~l~~~~g~~-~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKH--GAELWFTYQSEVLEKRVKPLAEEIGCN-FVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHc--CCEEEEEeCchHHHHHHHHHHHhcCCc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 4577888888764 4677777776643 568888887643323333332222221 345567654321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|+++.|.-+.
T Consensus 84 ~g~iDilVnnag~~ 97 (260)
T PRK06603 84 WGSFDFLLHGMAFA 97 (260)
T ss_pred cCCccEEEEccccC
Confidence 26799999987553
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=86.77 E-value=7.1 Score=35.15 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=56.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++++|+=+|+|. ++..+++.+. ..+++|+.+|.++...+.|+. .|. ... +..+.. ..+|+|+
T Consensus 200 l~GktVvViG~G~--IG~~va~~ak--~~Ga~ViV~d~d~~R~~~A~~----~G~--~~~--~~~e~v-----~~aDVVI 262 (413)
T cd00401 200 IAGKVAVVAGYGD--VGKGCAQSLR--GQGARVIVTEVDPICALQAAM----EGY--EVM--TMEEAV-----KEGDIFV 262 (413)
T ss_pred CCCCEEEEECCCH--HHHHHHHHHH--HCCCEEEEEECChhhHHHHHh----cCC--EEc--cHHHHH-----cCCCEEE
Confidence 4789999999985 3333444443 235689999999988776654 233 121 222211 3579998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH-HhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS-ADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~ 174 (256)
.... ...++.. ..+.+++||+++.+..
T Consensus 263 ~atG---------------------------~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 263 TTTG---------------------------NKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ECCC---------------------------CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 7421 1234544 4789999999988654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.75 E-value=9 Score=32.89 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=54.5
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc---hhhchhhhcCCCc
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTD---IASGLEKRLAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~f 116 (256)
++.+||-.|+|. |..++.+++.+ +. .+++++.++...+.+++. +.+ .++..+ +... .. ....+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-----G~~~v~~~~~s~~~~~~~~~~----g~~-~vi~~~~~~~~~~-~~-~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-----GAAEIVATDLADAPLAVARAM----GAD-ETVNLARDPLAAY-AA-DKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHHHHc----CCC-EEEcCCchhhhhh-hc-cCCCc
Confidence 678888887654 44544444442 44 689999888877755442 322 222111 1111 11 12358
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.... ....+....+.|+++|+++.+.
T Consensus 233 d~vld~~g---------------------------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 233 DVVFEASG---------------------------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred cEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 99987311 1234677788999999998754
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.74 E-value=8.6 Score=33.39 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=62.1
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCC-C
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAG-L 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~-~ 115 (256)
+++.+||=.|. |.|.+++.+++.+ ++.++++-.+++-.+.+++ .|.+. +....|+.+...+...+ .
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~-----G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKAL-----GATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 56889998884 4556777777764 2356666666655554443 34332 34445565555444333 6
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+|+|+..- =...+......|+++|+++.+....
T Consensus 212 vDvv~D~v----------------------------G~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 212 VDVVLDTV----------------------------GGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ceEEEECC----------------------------CHHHHHHHHHHhccCCEEEEEecCC
Confidence 99998731 1345666788899999999866533
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.71 E-value=15 Score=30.26 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=51.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-----CC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL-----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~-----~~ 114 (256)
+++++|=.|++ |.++..+++.+.++ +++|++++.+++..+.....+ ..+....++..|+.+... ... .+
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAA--GARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 35677777755 55666777776644 568999999887776655544 222233677777765421 100 25
Q ss_pred CccEEEECCCCC
Q 025207 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
.+|.++.+..+.
T Consensus 80 ~id~lv~~ag~~ 91 (263)
T PRK09072 80 GINVLINNAGVN 91 (263)
T ss_pred CCCEEEECCCCC
Confidence 689999986543
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=17 Score=29.93 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=49.2
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|.++ +.++.++++.+.++ +++|+.++-+....+.+++. .+....++..|+.+... .. .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~--G~~Vi~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQ--GATVIYTYQNDRMKKSLQKL---VDEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEecCchHHHHHHHhh---ccCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 467888888875 67788888888754 66888887764433222221 11123566777754321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|+++.|.-+.
T Consensus 81 ~g~iD~lv~nAg~~ 94 (252)
T PRK06079 81 VGKIDGIVHAIAYA 94 (252)
T ss_pred hCCCCEEEEccccc
Confidence 26799999987654
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.52 E-value=8.4 Score=32.65 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=60.8
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CCcc-------------eE-EEcchhhc
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NVHA-------------DL-INTDIASG 107 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~~~-------------~~-~~~d~~~~ 107 (256)
+|.=+|+ |.++..++..+.+. +..|+.+|.+++.++.+.+.+... +... .+ ...+..+.
T Consensus 3 ~V~VIG~--G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGA--GVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred EEEEECc--cHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 3544555 55665666665533 568999999999998877653321 1100 01 11122111
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
-...|+|+..-|- .......++.++.+.++++.++...+.+ -...++.+.+
T Consensus 79 -----~~~aD~Vi~avpe----------------------~~~~k~~~~~~l~~~~~~~~il~~~tSt-~~~~~l~~~~ 129 (288)
T PRK09260 79 -----VADADLVIEAVPE----------------------KLELKKAVFETADAHAPAECYIATNTST-MSPTEIASFT 129 (288)
T ss_pred -----hcCCCEEEEeccC----------------------CHHHHHHHHHHHHhhCCCCcEEEEcCCC-CCHHHHHhhc
Confidence 1457999875441 1233456677788888887766554333 2344444443
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.48 E-value=13 Score=30.61 Aligned_cols=78 Identities=21% Similarity=0.147 Sum_probs=49.7
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh---cCC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR---LAG 114 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~---~~~ 114 (256)
+++|=.|++ |.++..+++.+.++ +++|++++.+++.++.....+. +....++..|+.+... .. ..+
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAE--GWRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456777754 66777788877654 5689999988887666544332 2233677777765321 11 035
Q ss_pred CccEEEECCCCC
Q 025207 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
++|+++.+.-..
T Consensus 77 ~id~vi~~ag~~ 88 (260)
T PRK08267 77 RLDVLFNNAGIL 88 (260)
T ss_pred CCCEEEECCCCC
Confidence 789999887543
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.37 E-value=4.9 Score=35.31 Aligned_cols=99 Identities=18% Similarity=0.086 Sum_probs=56.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~ 115 (256)
+++.+||=.|+| .++..+.+.+.. -++ +|+++|.+++..+.+++ .|.+..+.. .++.+.......+.
T Consensus 184 ~~g~~VlV~G~G--~iG~~a~q~Ak~--~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 184 EEGDTVAVFGLG--GIGLSVIQGARM--AKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhCCC
Confidence 567888888864 444443333221 244 79999999998887754 243221111 11222222222236
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
+|+++-... -...+..+.+.++++ |+++++..
T Consensus 256 ~d~vid~~G---------------------------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 256 VDYSFECIG---------------------------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 898876311 124466677788886 99887653
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.36 E-value=14 Score=30.98 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=49.7
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh-cCCCc
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR-LAGLV 116 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~-~~~~f 116 (256)
+.+|=-|+ |.++.++++.+. + +++|+.+|.++...+.+.+.+...+....++..|+.+... .. ..+.+
T Consensus 3 k~~lItGa--~gIG~~la~~l~-~--G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVG-A--GKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHh-C--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 34554564 468888998884 2 6799999998877666555554444344566777654321 11 12579
Q ss_pred cEEEECCCCC
Q 025207 117 DVMVVNPPYV 126 (256)
Q Consensus 117 D~Ii~npP~~ 126 (256)
|+++.|.-+.
T Consensus 78 d~li~nAG~~ 87 (275)
T PRK06940 78 TGLVHTAGVS 87 (275)
T ss_pred CEEEECCCcC
Confidence 9999987643
|
|
| >PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed | Back alignment and domain information |
|---|
Probab=86.28 E-value=6.4 Score=28.05 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=23.1
Q ss_pred HHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025207 86 TRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 86 a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.++.++.+|++.++...+..+.........+|+|++.|
T Consensus 21 ~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P 58 (104)
T PRK09590 21 TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP 58 (104)
T ss_pred HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh
Confidence 34455567777677777766543221234689999954
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.26 E-value=14 Score=30.29 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=48.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.|+ +|.++.++++.+.++ +++|+.++.+.. +...+.+...+.+..++..|+.+... .. .-
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~--G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKA--GADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 5688998885 456677778877653 668888876532 22333333334334567777655421 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|.-..
T Consensus 82 g~iD~lv~~ag~~ 94 (251)
T PRK12481 82 GHIDILINNAGII 94 (251)
T ss_pred CCCCEEEECCCcC
Confidence 5799999987554
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.15 E-value=7.7 Score=34.93 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=62.0
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh----------hcCC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK----------RLAG 114 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~----------~~~~ 114 (256)
+|.=+| .|.++..++..+.+. +.+|+++|.+++.++..+.. .. .+...++.+.... ...+
T Consensus 5 kI~VIG--lG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g----~~--~~~e~~l~~~l~~~~~~g~l~~~~~~~ 74 (415)
T PRK11064 5 TISVIG--LGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRG----EI--HIVEPDLDMVVKTAVEGGYLRATTTPE 74 (415)
T ss_pred EEEEEC--cchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCC----CC--CcCCCCHHHHHHHHhhcCceeeecccc
Confidence 454455 455555566666543 46899999999988753211 11 1111111110000 0012
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe-CCCCHHHHHHHHHHc
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL-TANDPSQICLQMMEK 189 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~~ 189 (256)
..|+|+...|-....+ +..........++.+.+.|++|-+++..+- ......++...+.+.
T Consensus 75 ~aDvvii~vptp~~~~--------------~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 75 PADAFLIAVPTPFKGD--------------HEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred cCCEEEEEcCCCCCCC--------------CCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 5788886544211000 111233456677888888988877665332 334455666666554
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.03 E-value=8.7 Score=29.53 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=58.3
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~ 131 (256)
|.|..+..+++.|.+. +..|++.|.+++..+...+. + -....+..+.. ...|+|++.-|-
T Consensus 8 GlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~----g---~~~~~s~~e~~-----~~~dvvi~~v~~------ 67 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA----G---AEVADSPAEAA-----EQADVVILCVPD------ 67 (163)
T ss_dssp --SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT----T---EEEESSHHHHH-----HHBSEEEE-SSS------
T ss_pred chHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh----h---hhhhhhhhhHh-----hcccceEeeccc------
Confidence 4567777788877643 56899999999877765542 2 12223333432 245999885441
Q ss_pred ccccccchhhhcCCCCcHHHHHHHHHH--HhhccccCeEEEEEEe-CCCCHHHHHHHHHHcCCc
Q 025207 132 EVGREGIASAWAGGENGRAVIDKILPS--ADKLLSKRGWLYLVTL-TANDPSQICLQMMEKGYA 192 (256)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~~g~~ 192 (256)
-.....++.. +...|++|.+++-.+. ......++.+.+.+.|..
T Consensus 68 -----------------~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 68 -----------------DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR 114 (163)
T ss_dssp -----------------HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE
T ss_pred -----------------chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce
Confidence 1224566666 7777877777665221 111233556666666644
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=85.74 E-value=13 Score=32.47 Aligned_cols=98 Identities=22% Similarity=0.190 Sum_probs=57.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.+++.+.+.+.. .++ .|+++|.+++..+.+++ .|.+ .++.. ++.+.......+
T Consensus 185 ~~g~~VlV~G~--G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~~~~v~~~~~~ 255 (368)
T cd08300 185 EPGSTVAVFGL--GAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKK----FGAT-DCVNPKDHDKPIQQVLVEMTDG 255 (368)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cCCC-EEEcccccchHHHHHHHHHhCC
Confidence 56788888875 4555555554432 245 69999999998877654 3432 22211 122222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+|+-.-- -...+....+.|+++ |+++++..
T Consensus 256 g~d~vid~~g---------------------------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 256 GVDYTFECIG---------------------------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCcEEEECCC---------------------------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 6899976310 123566677889887 99887643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=85.73 E-value=18 Score=29.49 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=50.5
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--cCCCc
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R--LAGLV 116 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~--~~~~f 116 (256)
++|=.| |+|.++..+++.+.++ ++.|+.++-++...+...+.+...+....++..|+.+... . . ..+..
T Consensus 2 ~~lItG-~sg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTG-GAQGIGKGIAERLAKD--GFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeC-CCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456666 4677777788877654 5689999988776665555554444444677777654321 1 0 12468
Q ss_pred cEEEECCCCC
Q 025207 117 DVMVVNPPYV 126 (256)
Q Consensus 117 D~Ii~npP~~ 126 (256)
|.++.+....
T Consensus 79 d~vi~~ag~~ 88 (254)
T TIGR02415 79 DVMVNNAGVA 88 (254)
T ss_pred CEEEECCCcC
Confidence 9999987654
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.64 E-value=15 Score=30.65 Aligned_cols=82 Identities=10% Similarity=-0.025 Sum_probs=48.7
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|.+ ++.++.++++.+.++ +++|+.+.-++...+.+++.....+. ...+..|+.+... .. .
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~--G~~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAA--GAELAFTYQGDALKKRVEPLAAELGA-FVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCchHHHHHHHHHHHhcCC-ceEEecCCCCHHHHHHHHHHHHHh
Confidence 45778888886 477888888887754 56888776554333333333222221 2356667654321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+..|+++.|.-+.
T Consensus 86 ~g~iD~lv~nAG~~ 99 (272)
T PRK08159 86 WGKLDFVVHAIGFS 99 (272)
T ss_pred cCCCcEEEECCccc
Confidence 25799999987554
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.53 E-value=12 Score=32.47 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=53.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
.++.+||=.|+ |.++..+.+.+... ++. |++++.+++..+.+++ .|.. .++.. +............+
T Consensus 159 ~~g~~vlV~G~--g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 159 CEGKNVIIIGA--GTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKS----LGAM-QTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH----cCCc-eEecCcccCHHHHHHHhcCCCC
Confidence 46788888876 44554444443322 444 7899999988777643 2332 12211 11111111112357
Q ss_pred c-EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 D-VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D-~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
| +|+-.-. -...+....+.|++||+++++.
T Consensus 230 d~~v~d~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILETAG---------------------------VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 7 5543210 1345777888999999999864
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=19 Score=30.08 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=49.4
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|++. +.++.++++.+.+. +++|+.++.++...+..++.....+.. .++..|+.+... .. .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~g~~-~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQ--GAELAFTYQGEALGKRVKPLAESLGSD-FVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhC--CCEEEEecCchHHHHHHHHHHHhcCCc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 467889899876 36777788887654 568888887654333333332222321 355667654421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 83 ~g~iD~lVnnAG~~ 96 (271)
T PRK06505 83 WGKLDFVVHAIGFS 96 (271)
T ss_pred hCCCCEEEECCccC
Confidence 26899999987543
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.14 E-value=16 Score=30.08 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=49.8
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCH--HHHHHHHHHHHHcCCcceEEEcchhhchh------hh-
Q 025207 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINP--YAVEVTRKTLEAHNVHADLINTDIASGLE------KR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~--~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~- 111 (256)
.++++|=.|+| ++.++.++++.+.++ +++|+.++.+. +..+...+.+ +....++..|+.+... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQ--GAEVVLTGFGRALRLTERIAKRL---PEPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHC--CCEEEEecCccchhHHHHHHHhc---CCCCcEEeCCCCCHHHHHHHHHHHH
Confidence 46789999986 677888888887754 56888887653 3333332222 2223566677654421 10
Q ss_pred -cCCCccEEEECCCCC
Q 025207 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+++|++|.|.-+.
T Consensus 81 ~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 81 EHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHcCCCcEEEEccccc
Confidence 126799999987553
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.03 E-value=12 Score=32.40 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=57.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcC-CCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLA-GLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~-~~f 116 (256)
.++.+||=.|+ |.++..+++.+... ++ .|++++.+++..+.+++ .+.+. .....++.+.+..... ..+
T Consensus 171 ~~g~~vlI~g~--g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 171 KPGDTALVLGA--GPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCC
Confidence 46777877764 45555555544432 45 79999988888777644 24321 1112233222222222 349
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++-.-. ....+..+.+.|+++|+++.+..
T Consensus 243 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAG---------------------------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHhccCCCEEEEEcc
Confidence 99987421 12346777888999999887543
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.98 E-value=11 Score=32.28 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=51.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.+|.=+|+| .++..++..+.+.+....|+++|.+++..+.+++ .+.... ...+..+. -...|+|+..-
T Consensus 7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~~-~~~~~~~~-----~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGDR-VTTSAAEA-----VKGADLVILCV 74 (307)
T ss_pred cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCce-ecCCHHHH-----hcCCCEEEECC
Confidence 567777755 4444455555443322479999999987766543 232111 11222121 13579998865
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|-. ....+++.+...++++..++.
T Consensus 75 p~~------------------------~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 PVG------------------------ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CHH------------------------HHHHHHHHHHhhCCCCCEEEe
Confidence 421 134556667677888876543
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.87 E-value=11 Score=32.42 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=56.1
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEE---Ecchhhchhhh-cCCC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKR-LAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~-~~~~ 115 (256)
.++.+||-.|+|. |..++.+++. .+.+++++..+++..+.+++ .+.+ .++ ..++.+.+... ....
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~-----~g~~v~~~~~s~~~~~~~~~----~g~~-~v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKA-----RGARVIVVDIDDERLEFARE----LGAD-DTINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCeEEEECCCHHHHHHHHH----hCCC-EEecCcccCHHHHHHHHhCCCC
Confidence 4678888887652 4454444444 25689999888887776643 2322 222 12222222222 2345
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++..-- -...+..+.+.|+++|.++.+.
T Consensus 228 vd~vld~~g---------------------------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 228 ADVVIDATG---------------------------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 899987310 1244677788999999988754
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.68 E-value=25 Score=30.48 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=74.2
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCCcc-----eEE-Ecchhhchhh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNVHA-----DLI-NTDIASGLEK 110 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~~~-----~~~-~~d~~~~~~~ 110 (256)
++|-=||+| .++..++..+. ..+..|+..|.+++..+.++..+.. .+... .+. ..++.+.
T Consensus 8 ~~VaVIGaG--~MG~giA~~~a--~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~a--- 80 (321)
T PRK07066 8 KTFAAIGSG--VIGSGWVARAL--AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEAC--- 80 (321)
T ss_pred CEEEEECcC--HHHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHH---
Confidence 567777665 33333444433 2377999999999988776665432 12110 111 1122111
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
-...|+|+-+-| ...+.-..++.++.+.++|+-++..++. .-...++...+.
T Consensus 81 --v~~aDlViEavp----------------------E~l~vK~~lf~~l~~~~~~~aIlaSnTS-~l~~s~la~~~~--- 132 (321)
T PRK07066 81 --VADADFIQESAP----------------------EREALKLELHERISRAAKPDAIIASSTS-GLLPTDFYARAT--- 132 (321)
T ss_pred --hcCCCEEEECCc----------------------CCHHHHHHHHHHHHHhCCCCeEEEECCC-ccCHHHHHHhcC---
Confidence 146799988654 1244567788899999999885554333 222344444332
Q ss_pred CcEEEEEecCC-CCccEEEEEEEecCcc
Q 025207 191 YAARIVVQRST-EEENLHIIKFWRDFDI 217 (256)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 217 (256)
-....+-.... +...+-+++.......
T Consensus 133 ~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 133 HPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred CcccEEEEecCCccccCceEEEeCCCCC
Confidence 22223333333 2333456677665543
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.59 E-value=20 Score=30.36 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=49.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|+.++.+++.++...+.+.. +.....+..|+.+... .. .-
T Consensus 8 ~gk~vlItGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTGA-ARGIGAELARRLHAR--GAKLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5678887775 455677777777643 57899999988876655444321 1122333466654321 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-..
T Consensus 84 g~id~vI~nAG~~ 96 (296)
T PRK05872 84 GGIDVVVANAGIA 96 (296)
T ss_pred CCCCEEEECCCcC
Confidence 5799999987553
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=84.52 E-value=18 Score=30.91 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=51.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++-+++..+.+...+. ...++..|+.+... .. ..
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~~--G~~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQA--GAHVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 5678888885 566788888877654 5689999988776655444332 13566777665421 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|..+.
T Consensus 98 ~~iD~li~nAg~~ 110 (315)
T PRK06196 98 RRIDILINNAGVM 110 (315)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=84.48 E-value=13 Score=34.14 Aligned_cols=125 Identities=11% Similarity=0.141 Sum_probs=64.8
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---cCCcc---e-----E-EEcchhhchhhhcC
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---HNVHA---D-----L-INTDIASGLEKRLA 113 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~~~~~---~-----~-~~~d~~~~~~~~~~ 113 (256)
|.=+ |.|.+++.++..+.+.+.+.+|+++|++++.++..++.... .++.. + + ...|..+. -
T Consensus 4 I~Vi--G~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~-----i 76 (473)
T PLN02353 4 ICCI--GAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH-----V 76 (473)
T ss_pred EEEE--CCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH-----H
Confidence 4445 55566666666666555567899999999998876543210 11100 0 0 11111111 1
Q ss_pred CCccEEEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE-eCCCCHHHHHHHHHH
Q 025207 114 GLVDVMVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT-LTANDPSQICLQMME 188 (256)
Q Consensus 114 ~~fD~Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~ 188 (256)
...|+++..- |........ . ....+.......+.+.+.|++|-.+++.+ ......+.+...+.+
T Consensus 77 ~~advi~I~V~TP~~~~g~~~--~---------~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGA--G---------KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcC--C---------CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 3468776532 432110000 0 01123457788899999998876655532 123334566666665
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=10 Score=30.99 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=51.7
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~fD~Ii~ 121 (256)
++||=.|+ +|.++..+++.+.+. +++|++++-++...+.........+....++..|+.+... ......+|+++.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARK--GHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 46777776 556677777777643 5789999888776655555544444445677788765421 122357999999
Q ss_pred CCCC
Q 025207 122 NPPY 125 (256)
Q Consensus 122 npP~ 125 (256)
|.-+
T Consensus 80 ~ag~ 83 (257)
T PRK09291 80 NAGI 83 (257)
T ss_pred CCCc
Confidence 7644
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.23 E-value=21 Score=29.17 Aligned_cols=81 Identities=11% Similarity=0.047 Sum_probs=52.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh------hh--
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~-- 111 (256)
.++++|=.|++ |.++..+++.+.++ +++|+.++.+++..+...+.+... +....++..|+.+... ..
T Consensus 8 ~~k~~lItGa~-~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 8 DGQTALITGAS-KGIGLAIAREFLGL--GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56788888874 45566677776644 568999998887776666655443 2233566777654321 10
Q ss_pred cCCCccEEEECCCC
Q 025207 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.-+++|.++.+.-+
T Consensus 85 ~~g~id~li~~ag~ 98 (257)
T PRK09242 85 HWDGLHILVNNAGG 98 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 12578999987754
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.19 E-value=17 Score=30.82 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=55.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--------CCcc---------eE-EEcchh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--------NVHA---------DL-INTDIA 105 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--------~~~~---------~~-~~~d~~ 105 (256)
.+|.=+|+| .++..++..+.+ .+..|+.+|.+++.++.+++++... .+.. .+ ...|..
T Consensus 4 ~kIaViGaG--~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ 79 (287)
T PRK08293 4 KNVTVAGAG--VLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA 79 (287)
T ss_pred cEEEEECCC--HHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence 356666665 444445555543 2568999999999988887664321 1100 11 122322
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+. -...|+|+..-|- ..+....+++++...++++-++..
T Consensus 80 ~a-----~~~aDlVieavpe----------------------~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 80 EA-----VKDADLVIEAVPE----------------------DPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred HH-----hcCCCEEEEeccC----------------------CHHHHHHHHHHHHhhCCCCCEEEE
Confidence 21 1457999886552 123356777888888877765544
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=84.14 E-value=22 Score=29.18 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=51.1
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEe-CCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATD-INPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD-~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++||=.|+ +|.++..+++.+.++ +++|+.+. .+....+.+.+.+...+....++..|+.+... .. .-
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQ--GFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 357888885 566788888887654 56787764 45555555555555555445677777765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|.++.+.-+.
T Consensus 79 ~~id~li~~ag~~ 91 (256)
T PRK12743 79 GRIDVLVNNAGAM 91 (256)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987554
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.11 E-value=12 Score=30.45 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=52.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=.|+ +|.++..+++.+.++ +++|+.++.++...+.+.+.+...+....++..|+.+... .. .-
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~--G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQK--GAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678888885 566677777776654 5689999999877666665555444444667777654311 11 01
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|.|+.+...
T Consensus 81 ~~id~vi~~ag~ 92 (253)
T PRK08217 81 GQLNGLINNAGI 92 (253)
T ss_pred CCCCEEEECCCc
Confidence 568999998754
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.97 E-value=21 Score=28.93 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=52.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.| |+|.++..+++.+.++ +.+|++++-++...+...+.+...+....++..|+.+... .. .-
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~--g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALARE--GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 457788777 6677888888887654 5689999988776655554443322223566777765421 00 01
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+||.+-.+.
T Consensus 82 ~~id~vi~~ag~~ 94 (250)
T PRK07774 82 GGIDYLVNNAAIY 94 (250)
T ss_pred CCCCEEEECCCCc
Confidence 4689999987654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.96 E-value=2.9 Score=35.53 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=69.6
Q ss_pred Cccc-cccceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC
Q 025207 1 MSLR-TAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN 79 (256)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~ 79 (256)
||+| .++++--.++.+.=+|+.+....-. ... . ...-.+++||=.|+ +|.++..+++.+.++ +++|++++-+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~k~vlItGa-sggIG~~la~~La~~--G~~Vi~~~R~ 73 (293)
T PRK05866 1 MSKRPLRRLTDQLTLAGMRPPISPQLLINR--PPR-Q-PVDLTGKRILLTGA-SSGIGEAAAEQFARR--GATVVAVARR 73 (293)
T ss_pred CCcchHHHHHHHHHHhccCCCCCchhhcCC--CCC-C-CcCCCCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEECC
Confidence 5666 5666655666666666654332211 000 0 00124577887786 456677777777643 6789999999
Q ss_pred HHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cCCCccEEEECCCC
Q 025207 80 PYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LAGLVDVMVVNPPY 125 (256)
Q Consensus 80 ~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~~~fD~Ii~npP~ 125 (256)
++..+...+.+...+....++..|+.+... .. .-+.+|+++.|.-.
T Consensus 74 ~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 74 EDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 887766665554434334667777665321 11 12478999987643
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.96 E-value=7.1 Score=34.76 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=51.2
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
.+||=+|| |.++..++..|.+.+- .+|+..|-+.+..+.+...... ..+....|+.+.. .... ..+|+||.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li-~~~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGG---KVEALQVDAADVDALVALI-KDFDLVIN 74 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccc---cceeEEecccChHHHHHHH-hcCCEEEE
Confidence 56888999 7777778888776543 6999999998887776655321 3467777776652 1222 34599987
Q ss_pred CCCCC
Q 025207 122 NPPYV 126 (256)
Q Consensus 122 npP~~ 126 (256)
-.|++
T Consensus 75 ~~p~~ 79 (389)
T COG1748 75 AAPPF 79 (389)
T ss_pred eCCch
Confidence 55443
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.93 E-value=25 Score=29.77 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=52.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh------hh-
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE------KR- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~- 111 (256)
..+++||=.|+ +|.++..+++.+.++ +++|+.++-+++..+.+.+.+... +....++..|+.+... ..
T Consensus 14 ~~~k~vlItGa-s~gIG~~~a~~l~~~--G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 14 QSGRVAVVTGA-NTGLGYETAAALAAK--GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred CCCCEEEEcCC-CCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46678887774 566777788877654 568888888877666555544432 2233677778765421 11
Q ss_pred -cCCCccEEEECCCCC
Q 025207 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+.+|++|.|....
T Consensus 91 ~~~~~iD~li~nAg~~ 106 (306)
T PRK06197 91 AAYPRIDLLINNAGVM 106 (306)
T ss_pred hhCCCCCEEEECCccc
Confidence 124689999987543
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=83.86 E-value=13 Score=30.03 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=54.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++-++.......+.+...+....++.+|+.+... ... .
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAAD--GAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4577886664 677788888877654 5689999988776665555554444344677778765421 111 1
Q ss_pred CCccEEEECCCCCC
Q 025207 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
+.+|.|+.+.....
T Consensus 82 ~~~d~vi~~ag~~~ 95 (251)
T PRK12826 82 GRLDILVANAGIFP 95 (251)
T ss_pred CCCCEEEECCCCCC
Confidence 46899999875543
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.78 E-value=13 Score=32.03 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=53.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEc---ch---hhchhhh-
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINT---DI---ASGLEKR- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~---~~~~~~~- 111 (256)
.++.+||=.|+|. |..++.+++. .++. +++++.+++..+.+++. +.+ .++.. +. .+.....
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~-----~G~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKA-----FGATKVVVTDIDPSRLEFAKEL----GAT-HTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEECCCHHHHHHHHHc----CCc-EEeccccccchhHHHHHHHHh
Confidence 4677887776543 3444444443 2445 89998888877666441 322 12211 11 1111111
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....+|+|+-.-. ....+....+.|+++|+++.+.
T Consensus 231 ~~~~~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTG---------------------------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 2245999986311 1235677788999999988754
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.59 E-value=12 Score=32.02 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=55.1
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCc
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~f 116 (256)
.++.+||-.|+| .|..++.+++. .+++ +++++.+++..+.+++ .+.. .++..+-.+.. .......+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~-----~G~~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKL-----NGASRVTVAEPNEEKLELAKK----LGAT-ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEECCCHHHHHHHHH----hCCe-EEecCCCCCHHHHHHhcCCCC
Confidence 467889888754 23444444443 2445 8899989887776643 2332 22221111100 11123569
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..-+ ....+....+.|+++|+++.+..
T Consensus 228 d~v~~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 228 DVVIEATG---------------------------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred cEEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEEec
Confidence 99987421 12456677888999999987543
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.59 E-value=11 Score=30.66 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=52.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhc--------hhhh-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASG--------LEKR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~--------~~~~- 111 (256)
++++||=.| |+|.++..+++.+.+. +++|++++.++...+...+.+...+. ...++..|+... ....
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARH--GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 678888888 5777888888887654 56999999998777666555544332 224555555311 0111
Q ss_pred -cCCCccEEEECCCC
Q 025207 112 -LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 -~~~~fD~Ii~npP~ 125 (256)
.-+++|.|+.+...
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 12578999987643
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=83.58 E-value=2 Score=32.35 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=60.6
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc------eEEEcchhhchhhhcCCCccEEEECCC
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA------DLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
.|.|.++..++..|.+ .+..|+.+.-.+ .++..+ ..++.. ..+...............+|+|+..-.
T Consensus 4 ~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 4 IGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIK----EQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp ESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHH----HHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred ECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhh----heeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 3666677777877765 456899999777 555432 233321 111111000000112468999988421
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
.+ .....+..+.+.+.++..+++...+....+.+.+.+
T Consensus 77 a~------------------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 77 AY------------------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp GG------------------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred cc------------------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 10 156788889999999988888766665455555554
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.51 E-value=11 Score=31.88 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=59.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cC-Ccc--------eEE-Ecchhhc
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HN-VHA--------DLI-NTDIASG 107 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~-~~~--------~~~-~~d~~~~ 107 (256)
+|.=+|+ |.++..++..+... +.+|+++|.+++.++.+++.+.. .+ +.. .+. ..|...
T Consensus 5 kI~VIG~--G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 79 (282)
T PRK05808 5 KIGVIGA--GTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD- 79 (282)
T ss_pred EEEEEcc--CHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 3444554 55555566655433 45899999999998766543322 22 110 111 122211
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
-+..|+|+..-| ........++..+.+.++++.++...+.+ -....+.+.+
T Consensus 80 -----~~~aDlVi~av~----------------------e~~~~k~~~~~~l~~~~~~~~il~s~ts~-~~~~~la~~~ 130 (282)
T PRK05808 80 -----LKDADLVIEAAT----------------------ENMDLKKKIFAQLDEIAKPEAILATNTSS-LSITELAAAT 130 (282)
T ss_pred -----hccCCeeeeccc----------------------ccHHHHHHHHHHHHhhCCCCcEEEECCCC-CCHHHHHHhh
Confidence 145799887432 11223457888888889998877543332 2233444444
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=83.46 E-value=12 Score=30.96 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=54.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+||=.|+|. |..++.+++.+ ++. +++++.+++..+.+++. +....+....- .. .....+|+
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~-----g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~---~~~~~~d~ 162 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA-----GAREVVGVDPDAARRELAEAL----GPADPVAADTA-DE---IGGRGADV 162 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCcEEEECCCHHHHHHHHHc----CCCccccccch-hh---hcCCCCCE
Confidence 4678888887653 44444444442 345 99999998887765542 21111111100 00 01246899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..-. ....+....+.|+++|+++.+..
T Consensus 163 vl~~~~---------------------------~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 163 VIEASG---------------------------SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred EEEccC---------------------------ChHHHHHHHHHhcCCcEEEEEec
Confidence 886311 12356777888999999987653
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.33 E-value=16 Score=31.64 Aligned_cols=97 Identities=20% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~ 115 (256)
+++.+||=.|+ |.++..+++..... ++ .++++|.+++..+.+++ .|.+ .++. .+......... ...
T Consensus 165 ~~g~~vlI~g~--g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~~~~~~i~~~~~~~~ 235 (351)
T cd08285 165 KLGDTVAVFGI--GPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKE----YGAT-DIVDYKNGDVVEQILKLTGGKG 235 (351)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----cCCc-eEecCCCCCHHHHHHHHhCCCC
Confidence 46788888875 44554444443322 34 69999999887776654 3332 2221 12222222221 246
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++..-. -...+..+.+.|+++|+++.+.
T Consensus 236 ~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 236 VDAVIIAGG---------------------------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CcEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEec
Confidence 899986311 1245777888899999988754
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=83.22 E-value=26 Score=29.41 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=75.3
Q ss_pred HHHHHHHhhcc--cccCCCCEEEEecccccH---HH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEE
Q 025207 27 LVDALLADRIN--LVEHHPVLCMEVGCGSGY---VI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI 100 (256)
Q Consensus 27 l~~~l~~~~~~--~~~~~~~~VLDlGcG~G~---~~-~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~ 100 (256)
-+..+-+++.. +--..+.+||-+|.|+-- .+ .-+.+++. .++.++-.|+.+-.-+ ....+
T Consensus 44 KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP---~~ailvDnDi~d~vSD-----------a~~~~ 109 (299)
T PF06460_consen 44 KYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLP---EDAILVDNDIRDYVSD-----------ADQSI 109 (299)
T ss_dssp HHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS----TT-EEEEEESS--B-S-----------SSEEE
T ss_pred HHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCC---CCcEEEecchhhhccc-----------cCCce
Confidence 34456666643 112467899999988532 22 22344431 2567777787654321 12678
Q ss_pred EcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCC-C-cHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025207 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGE-N-GRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
.+|......+ .+||+|+++.= ..... ..+++ . ...+...+..-+.+.|+-||.+++-.--...
T Consensus 110 ~~Dc~t~~~~---~k~DlIiSDmY-d~~~k-----------~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw 174 (299)
T PF06460_consen 110 VGDCRTYMPP---DKFDLIISDMY-DGRTK-----------NCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW 174 (299)
T ss_dssp ES-GGGEEES---S-EEEEEE-----TTS------------SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS-
T ss_pred eccccccCCC---CcccEEEEecc-ccccc-----------ccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc
Confidence 8898877554 79999999731 10000 00010 0 0113556677788899999999985543444
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 179 PSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
..++-+++....+-....-..-......+++..-.
T Consensus 175 ~~~Lyel~~~F~~wt~FcT~VNtSSSEaFLigiNY 209 (299)
T PF06460_consen 175 NAQLYELMGYFSWWTCFCTAVNTSSSEAFLIGINY 209 (299)
T ss_dssp -HHHHHHHTTEEEEEEEEEGGGTTSS-EEEEEEEE
T ss_pred cHHHHHHHhhcccEEEEecccCccccceeEEeeec
Confidence 46666666655443333333333333344444433
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=83.07 E-value=16 Score=30.12 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=47.0
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHH--HHHHHHHHHHHcCCcceEEEcchhhchh------hh-
Q 025207 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPY--AVEVTRKTLEAHNVHADLINTDIASGLE------KR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~--~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~- 111 (256)
.++.+|=.|++ ++.++.++++.+.++ +++|+.++.+.+ ..+...+.+...+-...++..|+.+... ..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAA--GAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK 82 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence 46788889985 678888899887754 567776654322 1111111122111122455666644321 11
Q ss_pred -cCCCccEEEECCCCC
Q 025207 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+++|+++.|.-+.
T Consensus 83 ~~~g~iD~lv~nag~~ 98 (258)
T PRK07370 83 QKWGKLDILVHCLAFA 98 (258)
T ss_pred HHcCCCCEEEEccccc
Confidence 126799999988654
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.89 E-value=17 Score=35.00 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=50.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|+++|.++...+.+.+.+... ....++..|+.+... .. .-
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~--Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAE--GACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578887775 456677777777654 568999999988776655544321 123566667654321 00 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+||.+.-..
T Consensus 497 g~iDvvI~~AG~~ 509 (681)
T PRK08324 497 GGVDIVVSNAGIA 509 (681)
T ss_pred CCCCEEEECCCCC
Confidence 4789999876543
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.86 E-value=12 Score=30.49 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=51.2
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCCC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~~ 115 (256)
++||=.| |+|.++..+++.+.++ +.+|++++-++...+.....+...+....++.+|+.+... .. ....
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAA--GANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3566666 6677788888877654 5689999998877666665554444344677777765420 11 1245
Q ss_pred ccEEEECCCC
Q 025207 116 VDVMVVNPPY 125 (256)
Q Consensus 116 fD~Ii~npP~ 125 (256)
.|.|+.+.-.
T Consensus 79 ~d~vi~~a~~ 88 (255)
T TIGR01963 79 LDILVNNAGI 88 (255)
T ss_pred CCEEEECCCC
Confidence 8999987644
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.60 E-value=7.7 Score=31.81 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=56.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.| |+|.++..+++.+.++ +++|++++-++...+...+.+...+....++..|+.+... .. .-
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQA--GAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 568899888 5778888888887654 5689999999887776666665544444666777765321 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|.++.+....
T Consensus 86 ~~~d~li~~ag~~ 98 (255)
T PRK07523 86 GPIDILVNNAGMQ 98 (255)
T ss_pred CCCCEEEECCCCC
Confidence 5689999987543
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.58 E-value=6.9 Score=34.11 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=58.2
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~ 115 (256)
+++.+|.=.||| -|...+.-++. .....|+++|+++...+.|++- |... +++. |+.+.....-++.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~----agA~~IiAvD~~~~Kl~~A~~f----GAT~-~vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKA----AGAGRIIAVDINPEKLELAKKF----GATH-FVNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHH----cCCceEEEEeCCHHHHHHHHhc----CCce-eecchhhhhHHHHHHHhcCCC
Confidence 456666666665 34444444444 2235899999999999988764 3321 2211 4444444443446
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.|..+-.- + ....+++....+.++|..+++-..
T Consensus 255 ~d~~~e~~------------------------G---~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 255 ADYAFECV------------------------G---NVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCEEEEcc------------------------C---CHHHHHHHHHHHhcCCeEEEEecC
Confidence 66665410 0 123566777777789998886643
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=82.46 E-value=6.9 Score=34.67 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCCc-
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNVH- 96 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~~- 96 (256)
+...+.+.....++..++.+...|+|.|.|.....++...+. ..-+|+++.+..-+.+..+... .|-.
T Consensus 175 E~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~----k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 175 ETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGC----KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred hhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhcc----ccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 334444444444455679999999999999876666655332 2466777766655555443322 2332
Q ss_pred --ceEEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 97 --ADLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 97 --~~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.+++++.+.... ......++|+.|=.-+ .+. +..=+.++..-+++|-+++-..
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~F----------dp~------------L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVAF----------DPE------------LKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEecccC----------CHH------------HHHhhHHHHhhCCCcceEeccc
Confidence 26777776654321 1235678888862111 111 1111336677788998888643
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.32 E-value=9.1 Score=33.53 Aligned_cols=98 Identities=20% Similarity=0.183 Sum_probs=57.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.+++.+.+.+.. .++ +|+++|.+++..+.+++ .|.. .++.. ++.+.......+
T Consensus 186 ~~g~~VlV~G~--g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~~~v~~~~~~ 256 (369)
T cd08301 186 KKGSTVAIFGL--GAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKK----FGVT-EFVNPKDHDKPVQEVIAEMTGG 256 (369)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cCCc-eEEcccccchhHHHHHHHHhCC
Confidence 57788888875 5666555554432 244 79999999988887654 3432 12211 121222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+++-... ....+....+.+++| |+++++..
T Consensus 257 ~~d~vid~~G---------------------------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 257 GVDYSFECTG---------------------------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 6898876311 123456667788996 99887543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=82.31 E-value=9 Score=32.96 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=54.1
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcch--hhchhhhc-CCC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDI--ASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~-~~~ 115 (256)
.++.+||-.|+|. |..++.+++. .+.. +++++-+++..+.+++ .+.. .++..+- ...+.... ...
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~-----~G~~~v~~~~~~~~~~~~l~~----~g~~-~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKI-----LGAKRVIAVDIDDEKLAVARE----LGAD-DTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEEcCCHHHHHHHHH----cCCC-EEecCccccHHHHHHHhCCCC
Confidence 4677888887543 4444444443 2455 9999888877665532 2332 2221110 11111111 235
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++.... -...+..+.+.|+++|+++.+.
T Consensus 228 ~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 228 ADLVIEAAG---------------------------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 999986411 1245677788999999988754
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.30 E-value=18 Score=29.56 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
++++||=.|++ |.++..+++.+.++ +++|++++.++...+...+.+. ..++..|+.+... .. ..
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAE--GATVVVGDIDPEAGKAAADEVG-----GLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHcC-----CcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 56889988874 56677788877654 5789999988776554433321 1455566544321 00 11
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|.++.+..+.
T Consensus 78 ~~id~vi~~ag~~ 90 (255)
T PRK06057 78 GSVDIAFNNAGIS 90 (255)
T ss_pred CCCCEEEECCCcC
Confidence 4689999887543
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=82.29 E-value=25 Score=29.87 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=60.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCC-cc--------eE-EEcchhh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNV-HA--------DL-INTDIAS 106 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~-~~--------~~-~~~d~~~ 106 (256)
++|-=+|+ |.++..++..+.. .+..|+++|.+++.++.+++.+.. .+. .. .. ...+. +
T Consensus 5 ~~V~vIG~--G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 79 (295)
T PLN02545 5 KKVGVVGA--GQMGSGIAQLAAA--AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-E 79 (295)
T ss_pred CEEEEECC--CHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-H
Confidence 44555555 5555556666543 356899999999998876655431 111 00 01 11121 1
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
. -...|+|+..-| ...+....++.++...++++.+++..+.+. ...++.+.+
T Consensus 80 ---~--~~~aD~Vieav~----------------------e~~~~k~~v~~~l~~~~~~~~il~s~tS~i-~~~~l~~~~ 131 (295)
T PLN02545 80 ---E--LRDADFIIEAIV----------------------ESEDLKKKLFSELDRICKPSAILASNTSSI-SITRLASAT 131 (295)
T ss_pred ---H--hCCCCEEEEcCc----------------------cCHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHHHHHhhc
Confidence 1 145699987433 112345677788888888887665433333 344444444
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.25 E-value=24 Score=28.88 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=49.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.++++|=.|. +|.++..+++.+.++ ++.++.++.++...+. .+.+...+....++..|+.+... ... -
T Consensus 6 ~~~~ilItGa-sggiG~~la~~l~~~--G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 6 KDKVVIVTGG-ASGIGAAISLRLAEE--GAIPVIFGRSAPDDEF-AEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHc--CCcEEEEcCChhhHHH-HHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4567777775 566788888877654 5678888877766533 33333334444677777754321 111 1
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|.|+.+...
T Consensus 82 ~~id~vi~~ag~ 93 (258)
T PRK08628 82 GRIDGLVNNAGV 93 (258)
T ss_pred CCCCEEEECCcc
Confidence 478999998754
|
|
| >PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins [] | Back alignment and domain information |
|---|
Probab=82.02 E-value=3.7 Score=31.61 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=39.6
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
..||.||...| +......-.|..+...|++||.++++........-+.+.+..++
T Consensus 68 ~~~D~vvly~P----------------------KaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~~ 122 (155)
T PF08468_consen 68 QDFDTVVLYWP----------------------KAKAEAQYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPYG 122 (155)
T ss_dssp TT-SEEEEE------------------------SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTTS
T ss_pred cCCCEEEEEcc----------------------CcHHHHHHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhhC
Confidence 57999999655 22344667789999999999999999887777778888887764
|
; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.92 E-value=26 Score=28.38 Aligned_cols=80 Identities=23% Similarity=0.231 Sum_probs=50.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh--h------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK--R------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~--~------~~ 113 (256)
++++||=.|+ +|.++..+++.+.++ +++|++++-++...+.+...+.. +....++.+|+.+...- . .-
T Consensus 4 ~~~~vlItGa-sg~iG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 4 EGKVAIVTGA-SSGIGEGIARRFAAE--GARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CCcEEEEECC-CChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3567777764 456677777776644 56899999998776665554432 22336777776644211 0 11
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|+|+.+..+
T Consensus 80 ~~~d~vi~~ag~ 91 (251)
T PRK07231 80 GSVDILVNNAGT 91 (251)
T ss_pred CCCCEEEECCCC
Confidence 468999998754
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=81.66 E-value=18 Score=30.95 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=29.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+++|+=+|+|. .+..++..+... +++|+.+|.++...+.+
T Consensus 151 ~g~kvlViG~G~--iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~ 191 (296)
T PRK08306 151 HGSNVLVLGFGR--TGMTLARTLKAL--GANVTVGARKSAHLARI 191 (296)
T ss_pred CCCEEEEECCcH--HHHHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 579999999864 555566666543 56999999998765544
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=81.61 E-value=7 Score=33.73 Aligned_cols=99 Identities=18% Similarity=0.103 Sum_probs=54.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEE--EcchhhchhhhcCCCcc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLI--NTDIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~--~~d~~~~~~~~~~~~fD 117 (256)
++.+|.=.|+ |.+++++++-... ....+|+|+|++++-.+.|++. |... +.. ...+.+.+.+.-++.+|
T Consensus 192 ~GstvAVfGL--G~VGLav~~Gaka-~GAsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmTdgGvD 264 (375)
T KOG0022|consen 192 PGSTVAVFGL--GGVGLAVAMGAKA-AGASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMTDGGVD 264 (375)
T ss_pred CCCEEEEEec--chHHHHHHHhHHh-cCcccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHhcCCce
Confidence 4444444444 4444444443322 2346899999999999988764 3321 111 11233444444467777
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.-+-.- | ..+.+.++....+.| |.-+++-.
T Consensus 265 ysfEc~------------------------G---~~~~m~~al~s~h~GwG~sv~iGv 295 (375)
T KOG0022|consen 265 YSFECI------------------------G---NVSTMRAALESCHKGWGKSVVIGV 295 (375)
T ss_pred EEEEec------------------------C---CHHHHHHHHHHhhcCCCeEEEEEe
Confidence 765310 0 234556666666777 88777554
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.59 E-value=9.6 Score=31.23 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=54.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.| |+|.++..+++.+.++ +++|+.++-+++..+...+.+...+....++..|+.+... .. .-
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGA--GAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 578888888 4666677788776643 6799999999877766666565544444677777654321 10 11
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|.++.+.-.
T Consensus 87 ~~id~vi~~ag~ 98 (256)
T PRK06124 87 GRLDILVNNVGA 98 (256)
T ss_pred CCCCEEEECCCC
Confidence 568999988654
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=81.51 E-value=21 Score=30.39 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=54.2
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+||-.|+| .|..++.+++. .+..+++++.+++..+.+++ .+.+ .++...-...... ..+.+|++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~-----~G~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~-~~~~~d~v 229 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARA-----MGFETVAITRSPDKRELARK----LGAD-EVVDSGAELDEQA-AAGGADVI 229 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH----hCCc-EEeccCCcchHHh-ccCCCCEE
Confidence 467788888875 44443333333 24689999999888776643 2222 1211111111101 12468988
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+..-. ....+..+.+.|+++|.++.+.
T Consensus 230 i~~~~---------------------------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVV---------------------------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCC---------------------------cHHHHHHHHHhcccCCEEEEEC
Confidence 76311 1245677788999999998764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.43 E-value=9.4 Score=31.37 Aligned_cols=81 Identities=25% Similarity=0.283 Sum_probs=56.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=.| |+|.++..+++.+.++ +++|+.++-++...+...+.+...+....++.+|+.+... .. ..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEA--GARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 567888888 6778888888887654 5689999998877776666665544444677788765321 10 01
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|.|+.+...
T Consensus 88 ~~id~vi~~ag~ 99 (259)
T PRK08213 88 GHVDILVNNAGA 99 (259)
T ss_pred CCCCEEEECCCC
Confidence 468999998654
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=81.38 E-value=12 Score=35.70 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=46.2
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
.+|+=+ |.|.++..+++.+.+. +..++.+|.|++.++.+++. + ..++.+|..+.. ....-++.|++++
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~----g--~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIA--GFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKF----G--MKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEE--ecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhc----C--CeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 455554 5556666677777643 45799999999999988652 2 378889987652 2222357888887
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.37 E-value=11 Score=32.92 Aligned_cols=98 Identities=19% Similarity=0.154 Sum_probs=55.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+++.... -++ +|+++|.+++..+.+++ .+.. .++.. ++.+........
T Consensus 183 ~~g~~vlV~G~--g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~~~~----~ga~-~~i~~~~~~~~~~~~~~~~~~~ 253 (365)
T cd08277 183 EPGSTVAVFGL--GAVGLSAIMGAKI--AGASRIIGVDINEDKFEKAKE----FGAT-DFINPKDSDKPVSEVIREMTGG 253 (365)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cCCC-cEeccccccchHHHHHHHHhCC
Confidence 46788888875 5555544443332 244 79999999888877754 2332 12111 112222222224
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+|+-..- -...+....+.|+++ |+++++..
T Consensus 254 g~d~vid~~g---------------------------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 254 GVDYSFECTG---------------------------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 6899986310 124466677788885 99887643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=81.31 E-value=5.5 Score=31.20 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=63.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|.=+|+ |.++..+++.+. .-+++|++.|.+........ .. .+...++.+.+. ..|+|+
T Consensus 34 l~g~tvgIiG~--G~IG~~vA~~l~--~fG~~V~~~d~~~~~~~~~~----~~----~~~~~~l~ell~-----~aDiv~ 96 (178)
T PF02826_consen 34 LRGKTVGIIGY--GRIGRAVARRLK--AFGMRVIGYDRSPKPEEGAD----EF----GVEYVSLDELLA-----QADIVS 96 (178)
T ss_dssp STTSEEEEEST--SHHHHHHHHHHH--HTT-EEEEEESSCHHHHHHH----HT----TEEESSHHHHHH-----H-SEEE
T ss_pred cCCCEEEEEEE--cCCcCeEeeeee--cCCceeEEecccCChhhhcc----cc----cceeeehhhhcc-----hhhhhh
Confidence 36788888866 566667777766 34789999999988655111 11 234445555432 579999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMME 188 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~ 188 (256)
...|....+..- +=......+|+|.+++=+..+.- ..+.+.+.+++
T Consensus 97 ~~~plt~~T~~l----------------------i~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 97 LHLPLTPETRGL----------------------INAEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp E-SSSSTTTTTS----------------------BSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hhhcccccccee----------------------eeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 988875433211 11234557888887775332221 33456666655
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.14 E-value=11 Score=30.47 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=49.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhc--------hhhh-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASG--------LEKR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~--------~~~~- 111 (256)
++++|+=.|+ +|.++..+++.+.++ +.+|++++-++...+...+.+...+ ....++..|+.+. ....
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAA--GATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHc--CCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 4678898984 677777788877653 5689999998877666655554332 1224444554321 1111
Q ss_pred --cCCCccEEEECCC
Q 025207 112 --LAGLVDVMVVNPP 124 (256)
Q Consensus 112 --~~~~fD~Ii~npP 124 (256)
..+.+|.|+.+.-
T Consensus 82 ~~~~~~id~vi~~ag 96 (239)
T PRK08703 82 EATQGKLDGIVHCAG 96 (239)
T ss_pred HHhCCCCCEEEEecc
Confidence 1156899998764
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.09 E-value=30 Score=28.69 Aligned_cols=81 Identities=25% Similarity=0.260 Sum_probs=49.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=.|++. .++.++++.+.++ +++|++++.+ ...+...+.+...+.+..++..|+.+... .. .-
T Consensus 5 ~~k~vlItGas~-gIG~aia~~l~~~--G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 5 ENKVAVITGAST-GIGQASAIALAQE--GAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHC--CCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 467788777654 4567777776644 6789999988 44444444444334334666777654421 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-+.
T Consensus 81 g~id~li~~Ag~~ 93 (272)
T PRK08589 81 GRVDVLFNNAGVD 93 (272)
T ss_pred CCcCEEEECCCCC
Confidence 5689999987554
|
|
| >COG4121 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.08 E-value=25 Score=29.37 Aligned_cols=133 Identities=14% Similarity=0.261 Sum_probs=82.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccC--------CCceEEEEeCCHHHHHHHHH-------------------------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEV--------PGVQYIATDINPYAVEVTRK------------------------- 88 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~--------~~~~v~giD~~~~~i~~a~~------------------------- 88 (256)
+...|+|+|-|+|...+.+.+...+.. ....+++++.+|.....+..
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 667899999999998776666533221 13468888877654322221
Q ss_pred -HHHHcCC-cceEEEcchhhchhhhcCC--CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 89 -TLEAHNV-HADLINTDIASGLEKRLAG--LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 89 -~~~~~~~-~~~~~~~d~~~~~~~~~~~--~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
.+...+. ...+..+|+.+.+++.... .+|+.+.+- |.+. +.|. .| .+.++..+.+..+
T Consensus 138 ~r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDg-FsP~-------kNP~-mW---------~~e~l~~~a~~~~ 199 (252)
T COG4121 138 AAAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDG-FRPV-------KNPE-MW---------EDELLNLMARIPY 199 (252)
T ss_pred HHhhhcchheeeeeeeehhhcCCcccccccCccEEecCC-cccc-------CChh-hc---------cHHHHHHHHhhcC
Confidence 1111111 1167778877776653221 688887642 1111 1111 12 5688999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025207 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+||.+.- +.....+++-+++.||.....
T Consensus 200 ~~~~l~t----~ssA~~vRr~L~~aGF~v~~r 227 (252)
T COG4121 200 RDPTLAT----FAAAIAVRRRLEQAGFTVEKR 227 (252)
T ss_pred CCCceec----hHHHHHHHHHHHHcCceeeec
Confidence 9999875 445677899999999986443
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.03 E-value=40 Score=30.07 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|.|.++..++..+.. +..|+++|++++.++.+++
T Consensus 7 GlGyvGl~~A~~lA~---G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQ---NHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHh---CCcEEEEECCHHHHHHHHc
Confidence 777777777766552 4689999999999988765
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=80.97 E-value=20 Score=30.66 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=50.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCCcc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~fD 117 (256)
.+.+++=+.-|+|.++..+.+... ..++++++++.+++..+.+++ .+.+ .++. .++.+...... ...+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~--~~G~~vi~~~~~~~~~~~~~~----~g~~-~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCK--ADGIKVINIVRRKEQVDLLKK----IGAE-YVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCCc-EEEECCCccHHHHHHHHhCCCCCc
Confidence 344454442333444433333322 135689999999888777754 3433 2222 22222222221 23689
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++...- ........+.|+++|+++.+..
T Consensus 215 ~vid~~g----------------------------~~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 215 IFFDAVG----------------------------GGLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred EEEECCC----------------------------cHHHHHHHHhhCCCCEEEEEEe
Confidence 9976310 1113445667899999988653
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.80 E-value=31 Score=28.64 Aligned_cols=82 Identities=13% Similarity=0.045 Sum_probs=48.0
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|.++ +.++.++++.+.+. +++|+.++.+....+.+++.....+ ...++..|+.+... .. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~--G~~vil~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLG-SDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEEEecchhHHHHHHHHHhccC-CceEeecCCCCHHHHHHHHHHHHhh
Confidence 457888888876 37777788887654 5688888776432222222211111 12456667654321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-+.
T Consensus 82 ~g~iD~linnAg~~ 95 (262)
T PRK07984 82 WPKFDGFVHSIGFA 95 (262)
T ss_pred cCCCCEEEECCccC
Confidence 25799999998654
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.73 E-value=13 Score=32.31 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.++-+++.++...+.+...+.+..++..|+.+... .. ..
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~--G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARR--GARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 4577777776 455677777777654 5789999999988877777666555554566677654321 11 12
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|++|.|.-+
T Consensus 83 g~iD~lVnnAG~ 94 (330)
T PRK06139 83 GRIDVWVNNVGV 94 (330)
T ss_pred CCCCEEEECCCc
Confidence 679999998654
|
|
| >COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=80.64 E-value=1.9 Score=41.34 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=38.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+..++|+..|.|.+.++.+.+ |+.|+++|++|.++-..+..+.
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRL------G~~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRL------GLEVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred cCCcccccccCCCccchHHHhc------CceeEEEecccHHHHHHHHHHh
Confidence 5689999999999999998887 6799999999999887777654
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=80.43 E-value=22 Score=26.72 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=52.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCC--HHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN--PYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAG 114 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~--~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~ 114 (256)
.||=.|++ +.++.++++.+.++ .+..|+.+.-+ ....+.....+...+....+...|+.+... .. ..+
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCC-CHHHHHHHHHHHhc-CceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45556655 66677788877665 34478888887 566666656666566555788888654421 11 136
Q ss_pred CccEEEECCCCCC
Q 025207 115 LVDVMVVNPPYVP 127 (256)
Q Consensus 115 ~fD~Ii~npP~~~ 127 (256)
.+|++|.|.....
T Consensus 80 ~ld~li~~ag~~~ 92 (167)
T PF00106_consen 80 PLDILINNAGIFS 92 (167)
T ss_dssp SESEEEEECSCTT
T ss_pred ccccccccccccc
Confidence 8999999887665
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=80.05 E-value=38 Score=29.16 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=49.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--CcceEEEcchhhch----h---h-h
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHADLINTDIASGL----E---K-R 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~~~~~~d~~~~~----~---~-~ 111 (256)
.++.+|=.|+ +|.++.++++.+.++ +++|+.++.+++.++...+.+.... .....+..|+.+.. . + .
T Consensus 52 ~g~~~lITGA-s~GIG~alA~~La~~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~ 128 (320)
T PLN02780 52 YGSWALVTGP-TDGIGKGFAFQLARK--GLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETI 128 (320)
T ss_pred cCCEEEEeCC-CcHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHh
Confidence 4678888885 555677788877654 5689999999988877766665431 22344555654211 1 1 1
Q ss_pred cCCCccEEEECCCC
Q 025207 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.....|+++.|..+
T Consensus 129 ~~~didilVnnAG~ 142 (320)
T PLN02780 129 EGLDVGVLINNVGV 142 (320)
T ss_pred cCCCccEEEEecCc
Confidence 11235588887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 256 | ||||
| 3q87_B | 170 | Structure Of Eukaryotic Translation Termination Com | 1e-13 | ||
| 2pjd_A | 343 | Crystal Structure Of 16s Rrna Methyltransferase Rsm | 1e-05 | ||
| 4dzr_A | 215 | The Crystal Structure Of Protein-(Glutamine-N5) Met | 4e-04 |
| >pdb|3Q87|B Chain B, Structure Of Eukaryotic Translation Termination Complex Methyltransferase Mtq2-Trm112 Length = 170 | Back alignment and structure |
|
| >pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc Length = 343 | Back alignment and structure |
|
| >pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5) Methyltransferase (Release Factor-Specific) From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 Length = 215 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 3e-50
Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 36/199 (18%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+ YEP +D++ L+DAL + + + +++G +G + L ++
Sbjct: 2 DWYEPGEDTYTLMDALEREGL-----EMKIVLDLGTSTGVITEQLR-------KRNTVVS 49
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TD+N A+E R +L+ D+ + + VDV+V NPPYVP +D
Sbjct: 50 TDLNIRALESHRGG--------NLVRADLLCSINQ---ESVDVVVFNPPYVPDTDDP--- 95
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GG GR VID+ + + G LYL+ + AN P ++ ++ E+GY RI
Sbjct: 96 -----IIGGGYLGREVIDRFVDAV-----TVGMLYLLVIEANRPKEVLARLEERGYGTRI 145
Query: 196 VVQRSTEEENLHIIKFWRD 214
+ R E ++IIK +
Sbjct: 146 LKVRKILGETVYIIKGEKS 164
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 1e-18
Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 23/200 (11%)
Query: 28 VDA-LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
+DA LLA + + ++G G+G + + + + + + + E
Sbjct: 23 MDAMLLASLVADDRACRIA--DLGAGAG----AAGMAVAARLEKAEVTLYERSQEMAEFA 76
Query: 87 RKTLEAHN----------VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGRE 136
R++LE + + AD+ A +++NPPY +
Sbjct: 77 RRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDA 136
Query: 137 GIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI- 195
A A A E + + +A ++ G L L+ ++I + I
Sbjct: 137 LKAEAHAMTEGL---FEDWIRTASAIMVSGGQLSLI-SRPQSVAEIIAACGSRFGGLEIT 192
Query: 196 -VVQRSTEEENLHIIKFWRD 214
+ R E+ ++ +
Sbjct: 193 LIHPRPGEDAVRMLVTAIKG 212
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 3e-17
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 18/147 (12%)
Query: 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
+ + +E+G G ++ ++ ++ + AT+++ E
Sbjct: 47 IFLKTFLRGGEVA-------LEIGTGHT----AMMALMAEKFFNCKVTATEVDEEFFEYA 95
Query: 87 RKTLEAHNV--HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAG 144
R+ +E +N N I G+ + G DV+ PPY P V E A G
Sbjct: 96 RRNIERNNSNVRLVKSNGGIIKGVVE---GTFDVIFSAPPYYDKPLGRVLTE--REAIGG 150
Query: 145 GENGRAVIDKILPSADKLLSKRGWLYL 171
G+ G K+L A L+ G + L
Sbjct: 151 GKYGEEFSVKLLEEAFDHLNPGGKVAL 177
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-16
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
LV+ + + V+ +VG GSG + S+AL PGV A D++ A+ V
Sbjct: 17 LVEEAIRFLKRMPSGTRVI--DVGTGSGCIAVSIAL----ACPGVSVTAVDLSMDALAVA 70
Query: 87 RKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVNPPYVPTPE-DEVGREGI----A 139
R+ E D D L +V NPPY+PT E D++
Sbjct: 71 RRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPR 130
Query: 140 SAWAGGENGRAVIDKILPSADKLLSK-RGWLYL 171
A GGE+G ++ +L++ R ++L
Sbjct: 131 LALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-16
Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 36/165 (21%)
Query: 11 VSSHPEVYEPCDDSFALVD---ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQE 67
+ V+ S+ VD +L + + + + +L ++GCG G + + L E
Sbjct: 25 FKTDSGVF-----SYGKVDKGTKILVENVVVDKDDDIL--DLGCGYGV----IGIALADE 73
Query: 68 VPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVP 127
V DIN A+++ ++ ++ +N+ I + E + ++ NPP
Sbjct: 74 VKST--TMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPI-- 129
Query: 128 TPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172
G+ V+ +I+ +LL G +++V
Sbjct: 130 ------------------RAGKEVLHRIIEEGKELLKDNGEIWVV 156
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 6e-16
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
LV+ L + I V ++G GSG + S+A + ATD++ AVE+
Sbjct: 111 LVELAL-ELIRKYGIKTVA--DIGTGSGAIGVSVA-----KFSDAIVFATDVSSKAVEIA 162
Query: 87 RKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE---DEVGREGIASA 141
RK E H V + + +++ +++++ NPPYV + +V E A
Sbjct: 163 RKNAERHGVSDRFFVRKGEFLEPFKEKF-ASIEMILSNPPYVKSSAHLPKDVLFEP-PEA 220
Query: 142 WAGGENGRAVIDKILPSADKLLSKRGWLYL 171
GGE+G + + + + +
Sbjct: 221 LFGGEDGLDFYREFFG---RYDTSGKIVLM 247
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 6e-16
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
LV+ LA + P +++G G+G + +LA E P + IA D P AV +
Sbjct: 98 LVEQALA----RLPEQPCRILDLGTGTGAIALALAS----ERPDCEIIAVDRMPDAVSLA 149
Query: 87 RKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIAS 140
++ + + + ++ +D S L ++V NPPY+ + +V E +
Sbjct: 150 QRNAQHLAIKNIHILQSDWFSALA---GQQFAMIVSNPPYIDEQDPHLQQGDVRFEP-LT 205
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYL 171
A ++G A I I+ + L G+L L
Sbjct: 206 ALVAADSGMADIVHIIEQSRNALVSGGFLLL 236
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 4e-15
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 30 ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89
LL + VL +VGCG+G L++ + P ++ D++ AVE +R T
Sbjct: 186 QLLLSTLTPHTKGKVL--DVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRAT 239
Query: 90 LEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149
L A+ V ++ +++ S ++ R D+++ NPP+ G +
Sbjct: 240 LAANGVEGEVFASNVFSEVKGRF----DMIISNPPFH----------------DGMQTSL 279
Query: 150 AVIDKILPSADKLLSKRGWLYLV 172
++ A + L+ G L +V
Sbjct: 280 DAAQTLIRGAVRHLNSGGELRIV 302
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 5e-14
Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 14/193 (7%)
Query: 28 VDA-LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
+DA LLA + +++ G+G + L+L + + +I ++
Sbjct: 35 IDAVLLAKFSY-LPIRKGKIIDLCSGNG----IIPLLLSTRTKA-KIVGVEIQERLADMA 88
Query: 87 RKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAG 144
++++ + + ++I D+ + D++ NPPY TP+ + A
Sbjct: 89 KRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIAR 148
Query: 145 GENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA---RIVVQRST 201
E ++ + A LL + G V I M + + V RS
Sbjct: 149 HE-VMCTLEDTIRVAASLLKQGGKANFV-HRPERLLDIIDIMRKYRLEPKRIQFVHPRSD 206
Query: 202 EEENLHIIKFWRD 214
E N +++ +D
Sbjct: 207 REANTVLVEGIKD 219
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 2e-12
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 25/164 (15%)
Query: 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG 70
+ +H V+ + ++ ++GCG+G + L L + P
Sbjct: 195 IHNHANVFSRTGLDIG--ARFFMQHLPENLEGEIV--DLGCGNGV----IGLTLLDKNPQ 246
Query: 71 VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS-GLEKRLAGLVDVMVVNPPYVPTP 129
+ + D +P AV +R +E + A + + L + ++ NPP+
Sbjct: 247 AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH--- 303
Query: 130 EDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173
V ++ A + L G LY+V
Sbjct: 304 -------------QQHALTDNVAWEMFHHARRCLKINGELYIVA 334
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 4e-10
Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 14 HPEVYEPCDDSFALVDALLAD---RINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG 70
E P + D + + +++G G+ + +LG + G
Sbjct: 34 PLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGAS----CIYPLLGATLNG 89
Query: 71 VQYIATDINPYAVEVTRKTLEAHNVHADL------INTDIASGLEKRLAGLVDVMVVNPP 124
++AT+++ +K +E +N+ + T + L++ + D + NPP
Sbjct: 90 WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPP 149
Query: 125 YVPTPED 131
+ +
Sbjct: 150 FFANQLE 156
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 5e-10
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 24/128 (18%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105
+++G G G L L L + V + + + +V +K LEA+ + A +++D+
Sbjct: 237 VLDLGAGYGA----LTLPLARMGAEV--VGVEDDLASVLSLQKGLEANALKAQALHSDVD 290
Query: 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165
L + D++V NPP+ GG V + A L
Sbjct: 291 EALTE--EARFDIIVTNPPFH----------------VGGAVILDVAQAFVNVAAARLRP 332
Query: 166 RGWLYLVT 173
G +LV+
Sbjct: 333 GGVFFLVS 340
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 25/98 (25%)
Query: 41 HHP--VLCME--------------VGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84
HH L ++ +G GSG V+ A LG + + DI+P +
Sbjct: 103 HHETTRLALKALARHLRPGDKVLDLGTGSG-VLAIAAEKLGGKA-----LGVDIDPMVLP 156
Query: 85 VTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122
+ + V + + + L G D++V N
Sbjct: 157 QAEANAKRNGVRPRFLEGSLEAALPF---GPFDLLVAN 191
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-07
Identities = 38/179 (21%), Positives = 64/179 (35%), Gaps = 36/179 (20%)
Query: 31 LLADRI----NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
+++ R+ + V +L +VG Y L + L + IA ++ +
Sbjct: 1 MISKRLELVASFVSQGAILL-DVGSDHAY----LPIELVERGQIKSAIAGEVVEGPYQSA 55
Query: 87 RKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGE 146
K +EAH + + I +A+GL D+V I A GG
Sbjct: 56 VKNVEAHGLK-EKIQVRLANGLA----------------AFEETDQV--SVITIAGMGGR 96
Query: 147 NGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEEN 205
+I +IL L+ L L D +I L + G+ +IV + EE
Sbjct: 97 ----LIARILEEGLGKLANVERLILQPNNREDDLRIWL--QDHGF--QIVAESILEEAG 147
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 24/174 (13%), Positives = 51/174 (29%), Gaps = 32/174 (18%)
Query: 32 LADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91
L + + + + ++G Y L + IA ++ + +K +
Sbjct: 12 LEKVASYITKNERIA-DIGSDHAY----LPCFAVKNQTASFAIAGEVVDGPFQSAQKQVR 66
Query: 92 AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAV 151
+ + + I+ +GL E + + I A GG +
Sbjct: 67 SSGLT-EQIDVRKGNGLAVI------------------EKKDAIDTIVIAGMGGT----L 103
Query: 152 IDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEEN 205
I IL L+ L+ Q+ + + I + E+N
Sbjct: 104 IRTILEEGAAKLAGVT--KLILQPNIAAWQLREWSEQNNW--LITSEAILREDN 153
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLE 109
GSG + A LG P A D++ + + R+ A + + D A L
Sbjct: 212 TGSGTIALEAASTLG---PTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRAD-ARHLP 267
Query: 110 KRLAGLVDVMVVNPPY 125
+ VD ++ NPP+
Sbjct: 268 RF-FPEVDRILANPPH 282
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-05
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 28/100 (28%)
Query: 41 HHP--VLCME--------------VGCGSGYVITSL-ALMLG-QEVPGVQYIATDINPYA 82
+H L M VG GSG I ++ A LG + V +ATDI+ +
Sbjct: 43 NHQTTQLAMLGIERAMVKPLTVADVGTGSG--ILAIAAHKLGAKSV-----LATDISDES 95
Query: 83 VEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122
+ + + ++ + + L + G D++V N
Sbjct: 96 MTAAEENAALNGIYDIAL---QKTSLLADVDGKFDLIVAN 132
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Length = 373 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-05
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 13/125 (10%)
Query: 9 RLVSSHPEVYEPCDDSFALVD-----ALLADRINLVEHHPVLCMEVGCGSGYVITSLALM 63
+V PE D ++ + +L +E+ + +G +TS+ALM
Sbjct: 136 EIVKDRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFV--LGDDD---LTSIALM 190
Query: 64 LGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMVVN 122
L + DI+ + K ++ D+ L D + +
Sbjct: 191 L--SGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248
Query: 123 PPYVP 127
PP
Sbjct: 249 PPETL 253
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGL 108
CGSG ++ LAL + I + + A V I D L
Sbjct: 226 CGSGTILIELALRR----YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ-L 280
Query: 109 EKRLAGLVDVMVVNPPY 125
+ VD + N PY
Sbjct: 281 SQY-VDSVDFAISNLPY 296
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 4e-05
Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 36/178 (20%)
Query: 32 LADRINLVEH---HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88
L+ R+ V + ++VG Y L + L Q IA ++ + K
Sbjct: 8 LSKRLQKVANYVPKGARLLDVGSDHAY----LPIFLLQMGYCDFAIAGEVVNGPYQSALK 63
Query: 89 TLEAHNVHADLINTDIASGLEKRLAG-LVDVMVVNPPYVPTPEDEVGREGIASAWAGGEN 147
+ H + I+ +A+GL +D + + GG
Sbjct: 64 NVSEHGLT-SKIDVRLANGLSAFEEADNIDTITI-------------------CGMGGR- 102
Query: 148 GRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEEN 205
+I IL + L L L N + + + IV + E +
Sbjct: 103 ---LIADILNNDIDKLQHVKTLVLQ--PNNREDDLRKWLAANDF--EIVAEDILTEND 153
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 5e-05
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++ G G+G ++ + +LG E A DI+P A+E ++ +
Sbjct: 56 IDAGTGNG-ILACGSYLLGAE----SVTAFDIDPDAIETAKRNCG---------GVNFMV 101
Query: 107 GLEKRLAGLVDVMVVNPPYVPTPED 131
++G D ++NPP+ +
Sbjct: 102 ADVSEISGKYDTWIMNPPFGSVVKH 126
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Length = 344 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 6e-05
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 50 GCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL 108
CG+ + T + + + V D++ + + + L++ D GL
Sbjct: 138 ACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD---GL 194
Query: 109 EKRLAGLVDVMVVNPPYVPTPEDEV 133
L VDV++ + P P+DE
Sbjct: 195 ANLLVDPVDVVISDLPVGYYPDDEN 219
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87
+ L VL + G G S+ + G + G+ +I+ ++
Sbjct: 11 LYRFLKYCNESNLDKTVL--DCGAGGDLPPLSIFVEDGYKTYGI-----EISDLQLKKAE 63
Query: 88 KTLEAHNVHADLINTDI 104
+N ++ DI
Sbjct: 64 NFSRENNFKLNISKGDI 80
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN----VHADLIN 101
+++G G+G L+ L ++ P + D++ +E+ + + + AD
Sbjct: 48 ILDLGAGTG----LLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSK 103
Query: 102 TDI 104
D
Sbjct: 104 YDF 106
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV 85
++ LL VL E GCG G + ++L + P + + DI+P ++E
Sbjct: 23 ETLEKLLHHDTVYPPGAKVL--EAGCGIG----AQTVILAKNNPDAEITSIDISPESLEK 76
Query: 86 TRKTLEAHNV 95
R+ E + +
Sbjct: 77 ARENTEKNGI 86
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 2e-04
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTD 103
++ CG+G LA ++G + DI A+ T K L N+ LI D
Sbjct: 26 VVDATCGNGNDTAFLASLVG---ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK-D 81
Query: 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDE 132
++K + V ++ N Y+P+ +
Sbjct: 82 GHQNMDKYIDCPVKAVMFNLGYLPSGDHS 110
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 3e-04
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN 101
H ++ GCG LAL E + Y A DI+ + +
Sbjct: 49 HVSSILDFGCGFN----PLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF 104
Query: 102 TDIASGLEKRLAGLV 116
+ S + K +V
Sbjct: 105 LNKESDVYKGTYDVV 119
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87
+ A L +R++ +++GCG GY + A +P + D++ A++
Sbjct: 74 IVAQLRERLD---DKATAVLDIGCGEGYYTHAFA----DALPEITTFGLDVSKVAIKAAA 126
Query: 88 KTL-EAHNVHADLINTDIASG 107
K + A +
Sbjct: 127 KRYPQVTFCVASSHRLPFSDT 147
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 4e-04
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 48 EVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104
+ GCG GY+ L +L G +Y D + R+ ++ + D
Sbjct: 28 DYGCGYGYLGLVLMPLLP---EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA 81
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 5e-04
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 23/120 (19%)
Query: 6 AQIRLVSSHPEVYEPCDDSFA-----------LVDALLADRINLVEHHP----VLCMEVG 50
+ +R + S Y F +D L I + +L +G
Sbjct: 3 SSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKIL--SIG 60
Query: 51 CGSGYVITSLALMLGQEVPGV--QYIATDINPYAVEVTRKTLEAH----NVHADLINTDI 104
G+G + + + + PGV + + + ++ + NV
Sbjct: 61 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS 120
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 5e-04
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 31 LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYI-ATDINPYAVEVTRKT 89
L + + PV + SG L E V+ A DI+ A+E+ ++
Sbjct: 41 LGLEYLCKKLGRPVKVADPLSASGIRAIRFLL----ETSCVEKAYANDISSKAIEIMKEN 96
Query: 90 LEAHNVHADLINT---DIASGLEKRLAGLVDVMVVNPPYVPTP 129
+ +N+ D + L K D + ++P P P
Sbjct: 97 FKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPFGTPVP 139
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} Length = 878 | Back alignment and structure |
|---|
Score = 39.9 bits (92), Expect = 7e-04
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHADLINTDIASG- 107
GSG ++ +++ +P Q A DI +E+ L + + I
Sbjct: 330 AGSGNLLATVSAGFNNVMPR-QIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGED 388
Query: 108 ---LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRA 150
L V V+V+NPPYV D + A R
Sbjct: 389 VCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRP 434
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 8e-04
Identities = 26/154 (16%), Positives = 43/154 (27%), Gaps = 34/154 (22%)
Query: 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88
LL ++ L E+GC +G LA + D+ P A+ +
Sbjct: 40 TQLLRLSLSSGAVSNGL--EIGCAAGAFTEKLAPH------CKRLTVIDVMPRAIGRACQ 91
Query: 89 TLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP--PYVPTPEDEVGREGIASAWAGGE 146
H TDI A L D++VV Y+
Sbjct: 92 RT-KRWSHISWAATDILQFST---AELFDLIVVAEVLYYLEDMTQ--------------- 132
Query: 147 NGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
+ + + K+L+ G L +
Sbjct: 133 -----MRTAIDNMVKMLAPGGHLVFGSARDATCR 161
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 38.3 bits (89), Expect = 9e-04
Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 20/128 (15%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDI 104
++ G+G L V A D+ A+ T + L + + +LI
Sbjct: 26 VVDATMGNGND----TAFLAGLSKKV--YAFDVQEQALGKTSQRLSDLGIENTELILDGH 79
Query: 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164
+ L+ + + + N Y+P+ + V I+KIL L
Sbjct: 80 EN-LDHYVREPIRAAIFNLGYLPSADKSV--------ITKPHTTLEAIEKIL----DRLE 126
Query: 165 KRGWLYLV 172
G L ++
Sbjct: 127 VGGRLAIM 134
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.93 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.93 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.9 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.89 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.89 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.88 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.85 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.84 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.83 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.8 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.79 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.78 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.78 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.77 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.77 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.77 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.77 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.76 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.76 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.76 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.76 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.76 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.76 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.75 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.75 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.75 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.75 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.75 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.75 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.74 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.74 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.74 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.74 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.74 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.74 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.74 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.73 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.73 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.73 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.73 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.73 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.73 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.72 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.72 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.72 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.72 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.72 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.72 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.72 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.72 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.72 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.72 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.72 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.71 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.71 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.71 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.71 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.71 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.71 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.71 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.71 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.7 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.7 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.7 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.7 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.7 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.7 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.7 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.69 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.69 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.69 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.69 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.69 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.69 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.69 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.69 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.68 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.68 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.68 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.68 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.68 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.68 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.68 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.68 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.68 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.68 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.68 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.68 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.68 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.68 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.68 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.67 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.67 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.67 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.67 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.67 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.67 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.67 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.67 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.67 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.67 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.66 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.66 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.66 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.66 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.66 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.66 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.66 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.66 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.66 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.66 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.66 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.65 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.65 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.65 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.65 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.65 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.65 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.64 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.64 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.64 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.64 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.64 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.64 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.64 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.64 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.64 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.64 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.64 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.64 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.63 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.63 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.63 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.63 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.63 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.63 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.63 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.62 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.62 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.62 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.62 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.62 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.62 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.62 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.62 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.62 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.62 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.61 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.61 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.61 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.61 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.61 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.61 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.6 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.6 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.6 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.6 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.6 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.6 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.6 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.6 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.6 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.6 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.6 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.59 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.59 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.59 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.59 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.59 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.59 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.59 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.58 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.58 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.58 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.58 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.58 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.58 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.58 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.58 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.58 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.57 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.57 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.57 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.57 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.56 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.56 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.56 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.56 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.56 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.56 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.55 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.55 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.55 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.55 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.55 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.55 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.54 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.54 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.54 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.54 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.53 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.53 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.53 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.53 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.52 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.52 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.52 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.52 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.52 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.52 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.52 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.52 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.51 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.51 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.51 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.51 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.51 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 99.5 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.5 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.5 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.5 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.49 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.49 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.49 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.49 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.48 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.48 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.48 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.47 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.47 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.47 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.46 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.46 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.45 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.45 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.44 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.43 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.43 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.42 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.42 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.41 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.38 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.37 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.36 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.36 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.36 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.36 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.35 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.34 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.31 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.31 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.3 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.29 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.29 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.27 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.27 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.27 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.26 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.25 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.24 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.23 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.2 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.19 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.19 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.18 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.17 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.13 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.13 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.12 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.11 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 99.05 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.04 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.03 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 99.03 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.99 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.99 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.95 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.83 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.81 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.71 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.56 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.52 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.41 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.38 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 98.34 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.29 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.28 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.24 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.21 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.14 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 98.1 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 98.08 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 98.01 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 98.0 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.95 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.9 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.89 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.87 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.77 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.77 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.74 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.74 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.69 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.65 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.64 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 97.54 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.46 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.46 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.4 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.4 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 97.34 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.31 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.22 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 97.16 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.94 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.72 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.67 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 96.64 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.56 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 96.46 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.42 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.38 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.36 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 96.29 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.25 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.23 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.22 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.2 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.17 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.08 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.08 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.06 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.02 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.99 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.97 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.94 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.89 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.89 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.85 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.82 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.81 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.78 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.75 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.74 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.68 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.67 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.65 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 95.62 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.62 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.57 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.55 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.54 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.25 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.24 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.22 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.19 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.15 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 95.07 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.03 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.0 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 94.96 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.93 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.92 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.84 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.77 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.68 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.66 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.65 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.62 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.54 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.47 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.38 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 94.23 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.21 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 94.15 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 94.04 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 93.94 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.93 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.67 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.67 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 93.6 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.4 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 93.4 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.39 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 93.29 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 93.28 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.26 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.23 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 93.21 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 93.15 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 93.13 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 93.13 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 93.08 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.02 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.79 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 92.74 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 92.71 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.6 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 92.48 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.47 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 92.37 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.32 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 92.26 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 92.15 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 92.11 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.04 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 92.01 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 91.98 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 91.97 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 91.91 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 91.86 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.8 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 91.77 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 91.61 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.55 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 91.45 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 91.44 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 91.39 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 91.32 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 91.16 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 90.67 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 90.58 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 90.5 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.31 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 90.24 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 90.13 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 89.87 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 89.75 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 89.69 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 89.69 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 89.55 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 89.53 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 89.31 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 89.11 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 89.01 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 88.79 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 88.72 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 88.67 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 88.66 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 88.61 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 88.56 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 88.54 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.32 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 88.15 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 88.13 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 88.12 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 88.03 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 88.03 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 87.95 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 87.94 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 87.82 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 87.82 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 87.8 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 87.78 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 87.68 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 87.62 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 87.6 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 87.57 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 87.48 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 87.34 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 87.33 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 87.28 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 87.08 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 87.08 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 87.07 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 87.07 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 87.04 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 86.97 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 86.78 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 86.73 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 86.65 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 86.54 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 86.44 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 86.34 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 86.29 | |
| 2dpm_A | 284 | M.dpnii 1, protein (adenine-specific methyltransfe | 86.03 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 85.88 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 85.87 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 85.66 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 85.58 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 85.55 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 85.54 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 85.38 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 85.3 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 85.29 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 85.23 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 85.12 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 84.94 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 84.91 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 84.9 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 84.75 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 84.7 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 84.62 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 84.47 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 84.18 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 84.14 |
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=181.03 Aligned_cols=192 Identities=22% Similarity=0.248 Sum_probs=126.3
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
|.+.+++|+|+++++.+++++++.+.. ..++.+|||+|||+|.+++.+++. .++++++|+|+++.+++.|++++
T Consensus 1 f~~~~~~~~p~~~~~~~~~~~~~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~~~~~~~~a~~~~ 74 (215)
T 4dzr_A 1 FEVGPDCLIPRPDTEVLVEEAIRFLKR--MPSGTRVIDVGTGSGCIAVSIALA----CPGVSVTAVDLSMDALAVARRNA 74 (215)
T ss_dssp CBCSGGGGSCCHHHHHHHHHHHHHHTT--CCTTEEEEEEESSBCHHHHHHHHH----CTTEEEEEEECC-----------
T ss_pred CcCCCCccCCCccHHHHHHHHHHHhhh--cCCCCEEEEecCCHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHH
Confidence 357899999999999999999988742 147899999999999999988887 66789999999999999999999
Q ss_pred HHcCCcceEEEcchhhchhh--hcCCCccEEEECCCCCCCCCc-----ccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 91 EAHNVHADLINTDIASGLEK--RLAGLVDVMVVNPPYVPTPED-----EVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 91 ~~~~~~~~~~~~d~~~~~~~--~~~~~fD~Ii~npP~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
..++...+++++|+.+.... ...++||+|++||||+..... +....++..++.++..+...+..+++.+.++|
T Consensus 75 ~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 154 (215)
T 4dzr_A 75 ERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVL 154 (215)
T ss_dssp --------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGB
T ss_pred HHhCCceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHh
Confidence 88877558888998874432 123789999999999876543 22334555666777777888899999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHH--HcCCcEEEEEecCCCCccEEE
Q 025207 164 SKRGWLYLVTLTANDPSQICLQMM--EKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~l 208 (256)
||||+++++.........+.+.+. +.||....+........++++
T Consensus 155 kpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~ 201 (215)
T 4dzr_A 155 ARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIA 201 (215)
T ss_dssp CSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEE
T ss_pred cCCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEE
Confidence 999995555566777888999998 889977767776666655443
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-24 Score=179.81 Aligned_cols=187 Identities=22% Similarity=0.322 Sum_probs=155.9
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.++++.|+++++.+++.+++.+. .++.+|||+|||+|.+++.++.. .++++++|+|+|+.+++.|++|
T Consensus 81 ~~~~~~~~~ipr~~te~l~~~~l~~~~----~~~~~vLDlG~GsG~~~~~la~~----~~~~~v~~vD~s~~~l~~a~~n 152 (276)
T 2b3t_A 81 PLFVSPATLIPRPDTECLVEQALARLP----EQPCRILDLGTGTGAIALALASE----RPDCEIIAVDRMPDAVSLAQRN 152 (276)
T ss_dssp EEECCTTSCCCCTTHHHHHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHH----CTTSEEEEECSSHHHHHHHHHH
T ss_pred eEEeCCCCcccCchHHHHHHHHHHhcc----cCCCEEEEecCCccHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHH
Confidence 366789999999999999999998764 36789999999999999988876 5678999999999999999999
Q ss_pred HHHcCCc-ceEEEcchhhchhhhcCCCccEEEECCCCCCCCC----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 90 LEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..+++. .+++++|+.+... +++||+|++||||..... .++..+++..++.++..+...+..++..+.++|+
T Consensus 153 ~~~~~~~~v~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk 229 (276)
T 2b3t_A 153 AQHLAIKNIHILQSDWFSALA---GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV 229 (276)
T ss_dssp HHHHTCCSEEEECCSTTGGGT---TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE
T ss_pred HHHcCCCceEEEEcchhhhcc---cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC
Confidence 9988875 4899999877532 468999999999987654 1344567777787777777888999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEE
Q 025207 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 208 (256)
|||++++.. ......++.+.+.+.||....+.....+..++++
T Consensus 230 pgG~l~~~~-~~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~ 272 (276)
T 2b3t_A 230 SGGFLLLEH-GWQQGEAVRQAFILAGYHDVETCRDYGDNERVTL 272 (276)
T ss_dssp EEEEEEEEC-CSSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEE
T ss_pred CCCEEEEEE-CchHHHHHHHHHHHCCCcEEEEEecCCCCCcEEE
Confidence 999999954 4556788999999999987777777777766554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=164.20 Aligned_cols=189 Identities=20% Similarity=0.242 Sum_probs=135.4
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
+.+.+.+|.|+++++.+. +... ..++.+|||+||| +|.+++.+++.. +.+|+|+|+++.+++.|+++
T Consensus 31 ~~~~~~~~~p~~~~~~l~---~~~~----~~~~~~vLDlG~G~~G~~~~~la~~~-----~~~v~~vD~s~~~~~~a~~~ 98 (230)
T 3evz_A 31 IEYHPKGLVTTPISRYIF---LKTF----LRGGEVALEIGTGHTAMMALMAEKFF-----NCKVTATEVDEEFFEYARRN 98 (230)
T ss_dssp CCCCTTSCCCCHHHHHHH---HHTT----CCSSCEEEEECCTTTCHHHHHHHHHH-----CCEEEEEECCHHHHHHHHHH
T ss_pred eecCCCeEeCCCchhhhH---hHhh----cCCCCEEEEcCCCHHHHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHH
Confidence 557889999988766552 2222 1478999999999 999999888873 46899999999999999999
Q ss_pred HHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025207 90 LEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 90 ~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
+..++...+++++|+.... .+.+++||+|++||||+....... .++..++.++..+...+..+++.+.++|||||++
T Consensus 99 ~~~~~~~v~~~~~d~~~~~-~~~~~~fD~I~~npp~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 175 (230)
T 3evz_A 99 IERNNSNVRLVKSNGGIIK-GVVEGTFDVIFSAPPYYDKPLGRV--LTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKV 175 (230)
T ss_dssp HHHTTCCCEEEECSSCSST-TTCCSCEEEEEECCCCC-----------------CCSSSCHHHHHHHHHHGGGEEEEEEE
T ss_pred HHHhCCCcEEEeCCchhhh-hcccCceeEEEECCCCcCCccccc--cChhhhhccCccchHHHHHHHHHHHHHhCCCeEE
Confidence 9999886699999964332 223578999999999998776443 3344556666667777899999999999999999
Q ss_pred EEEEeCC-CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025207 170 YLVTLTA-NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 170 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
+++.+.. ....++.+.+.+.||....+.... ......++.+.+..
T Consensus 176 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-g~~~~~~l~f~~~~ 221 (230)
T 3evz_A 176 ALYLPDKEKLLNVIKERGIKLGYSVKDIKFKV-GTRWRHSLIFFKGI 221 (230)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEEECC-CC-CEEEEEEECCC
T ss_pred EEEecccHhHHHHHHHHHHHcCCceEEEEecC-CCeEEEEEEEeccc
Confidence 9977644 345678899999999876665543 34445566666544
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=168.76 Aligned_cols=176 Identities=19% Similarity=0.249 Sum_probs=140.0
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.++++.|+++++.+++++++.+.. .++.+|||+|||+|.+++.++.. ++++|+|+|+|+.+++.|++|
T Consensus 94 ~~~v~~~~lipr~~te~lv~~~l~~~~~---~~~~~vLDlG~GsG~~~~~la~~-----~~~~v~~vDis~~al~~A~~n 165 (284)
T 1nv8_A 94 SFLVEEGVFVPRPETEELVELALELIRK---YGIKTVADIGTGSGAIGVSVAKF-----SDAIVFATDVSSKAVEIARKN 165 (284)
T ss_dssp EEECCTTSCCCCTTHHHHHHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHHH-----SSCEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCceecChhHHHHHHHHHHHhcc---cCCCEEEEEeCchhHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHH
Confidence 3678999999999999999999887642 35689999999999999888775 467999999999999999999
Q ss_pred HHHcCCc--ceEEEcchhhchhhhcCCCc---cEEEECCCCCCCCC---cccccccchhhhcCCCCcHHHHHHHHHHHh-
Q 025207 90 LEAHNVH--ADLINTDIASGLEKRLAGLV---DVMVVNPPYVPTPE---DEVGREGIASAWAGGENGRAVIDKILPSAD- 160 (256)
Q Consensus 90 ~~~~~~~--~~~~~~d~~~~~~~~~~~~f---D~Ii~npP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 160 (256)
+..+++. .+++++|+.+... ++| |+|++||||..... .++. +++..++.++.++. .+++.+.
T Consensus 166 ~~~~~l~~~v~~~~~D~~~~~~----~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl----~~~~~i~~ 236 (284)
T 1nv8_A 166 AERHGVSDRFFVRKGEFLEPFK----EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGL----DFYREFFG 236 (284)
T ss_dssp HHHTTCTTSEEEEESSTTGGGG----GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSC----HHHHHHHH
T ss_pred HHHcCCCCceEEEECcchhhcc----cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHH----HHHHHHHH
Confidence 9999886 4899999987543 478 99999999987554 2334 67788888877765 5677777
Q ss_pred hccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEE
Q 025207 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 208 (256)
+.|+|||++++. .+..+..++.+.+.+. .+.....+..++++
T Consensus 237 ~~l~pgG~l~~e-~~~~q~~~v~~~~~~~-----~~~~D~~g~~R~~~ 278 (284)
T 1nv8_A 237 RYDTSGKIVLME-IGEDQVEELKKIVSDT-----VFLKDSAGKYRFLL 278 (284)
T ss_dssp HCCCTTCEEEEE-CCTTCHHHHTTTSTTC-----EEEECTTSSEEEEE
T ss_pred hcCCCCCEEEEE-ECchHHHHHHHHHHhC-----CeecccCCCceEEE
Confidence 899999999984 4556666777777654 45566666666544
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=162.82 Aligned_cols=193 Identities=16% Similarity=0.192 Sum_probs=135.1
Q ss_pred eccCCccccCCchHHHHHHHHHhhcccccC-CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 12 SSHPEVYEPCDDSFALVDALLADRINLVEH-HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 12 ~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~-~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
.-.++.|.+..++.++..++ . .. ++.+|||+|||+|.+++.+++. .+. +|+|+|+++.+++.|++|+
T Consensus 25 ~q~~~~~~~~~d~~ll~~~~-----~--~~~~~~~vLDlG~G~G~~~~~la~~----~~~-~v~gvDi~~~~~~~a~~n~ 92 (259)
T 3lpm_A 25 IQSPSVFSFSIDAVLLAKFS-----Y--LPIRKGKIIDLCSGNGIIPLLLSTR----TKA-KIVGVEIQERLADMAKRSV 92 (259)
T ss_dssp EEBTTTBCCCHHHHHHHHHC-----C--CCSSCCEEEETTCTTTHHHHHHHTT----CCC-EEEEECCSHHHHHHHHHHH
T ss_pred EeCCCCccCcHHHHHHHHHh-----c--CCCCCCEEEEcCCchhHHHHHHHHh----cCC-cEEEEECCHHHHHHHHHHH
Confidence 34567788877666555543 1 24 6789999999999998877765 333 9999999999999999999
Q ss_pred HHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 91 EAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..+++. .+++++|+.+....+..++||+|++||||+................... .....+..+++.+.++|+|||+
T Consensus 93 ~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~l~~~~~~LkpgG~ 171 (259)
T 3lpm_A 93 AYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARH-EVMCTLEDTIRVAASLLKQGGK 171 (259)
T ss_dssp HHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC------------------------HHHHHHHHHHHHHEEEEEE
T ss_pred HHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhc-cccCCHHHHHHHHHHHccCCcE
Confidence 999986 4899999988765444689999999999987633221111111111111 1123467899999999999999
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcEEE---EEecCCCCccEEEEEEEecCccc
Q 025207 169 LYLVTLTANDPSQICLQMMEKGYAARI---VVQRSTEEENLHIIKFWRDFDIQ 218 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~l~~~~~~~~~~ 218 (256)
++++.+ .....++...+.+.+|.... ++.........+++++.++....
T Consensus 172 l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~~~~~ 223 (259)
T 3lpm_A 172 ANFVHR-PERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKDGKPG 223 (259)
T ss_dssp EEEEEC-TTTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEETCCSC
T ss_pred EEEEEc-HHHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEeCCCCC
Confidence 999765 44577888899999987654 34556667788999999876543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-21 Score=150.65 Aligned_cols=164 Identities=30% Similarity=0.543 Sum_probs=128.2
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.+|+|+++++.+++.+... ..++.+|||+|||+|.+++.+++. . +|+|+|+++.+++. ..
T Consensus 2 ~v~~P~~~~~~l~~~l~~~-----~~~~~~vLD~GcG~G~~~~~l~~~------~-~v~gvD~s~~~~~~--------~~ 61 (170)
T 3q87_B 2 DWYEPGEDTYTLMDALERE-----GLEMKIVLDLGTSTGVITEQLRKR------N-TVVSTDLNIRALES--------HR 61 (170)
T ss_dssp CSCCCCHHHHHHHHHHHHH-----TCCSCEEEEETCTTCHHHHHHTTT------S-EEEEEESCHHHHHT--------CS
T ss_pred cccCcCccHHHHHHHHHhh-----cCCCCeEEEeccCccHHHHHHHhc------C-cEEEEECCHHHHhc--------cc
Confidence 5799999999999985432 136779999999999988776654 2 89999999999987 12
Q ss_pred cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 96 HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 96 ~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
..+++++|+.+... +++||+|++||||...++... +.++..+. .++..+.+.| |||+++++...
T Consensus 62 ~~~~~~~d~~~~~~---~~~fD~i~~n~~~~~~~~~~~--------~~~~~~~~----~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 62 GGNLVRADLLCSIN---QESVDVVVFNPPYVPDTDDPI--------IGGGYLGR----EVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp SSCEEECSTTTTBC---GGGCSEEEECCCCBTTCCCTT--------TBCCGGGC----HHHHHHHHHC-CSSEEEEEEEG
T ss_pred CCeEEECChhhhcc---cCCCCEEEECCCCccCCcccc--------ccCCcchH----HHHHHHHhhC-CCCEEEEEEec
Confidence 33899999987433 378999999999987665432 33443433 3455555566 99999998888
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025207 176 ANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 176 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
.....++.+.+++.||....+.......++++.++..+..
T Consensus 126 ~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~~~~~ 165 (170)
T 3q87_B 126 ANRPKEVLARLEERGYGTRILKVRKILGETVYIIKGEKSH 165 (170)
T ss_dssp GGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEEECC-
T ss_pred CCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEEeccc
Confidence 8888999999999999999988888888998888877653
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=158.00 Aligned_cols=169 Identities=14% Similarity=0.201 Sum_probs=118.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---cCCc--ceEEEcchhhchh-----h
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---HNVH--ADLINTDIASGLE-----K 110 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~~~~--~~~~~~d~~~~~~-----~ 110 (256)
.++.+|||+|||+|.+++.++.. .++.+|+|+|+++.+++.|++|+.. +++. .+++++|+.+... .
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~----~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~ 110 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAAR----LEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG 110 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHH----CTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT
T ss_pred cCCCEEEEeCChHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc
Confidence 46789999999999999888887 6678999999999999999999988 8876 4899999988743 1
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
+.+++||+|++||||+..............++..... .+..+++.+.++|||||+++++.+.. ...++...+.+.
T Consensus 111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~l~~~- 185 (260)
T 2ozv_A 111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEG---LFEDWIRTASAIMVSGGQLSLISRPQ-SVAEIIAACGSR- 185 (260)
T ss_dssp CCTTCEEEEEECCCC---------------------C---CHHHHHHHHHHHEEEEEEEEEEECGG-GHHHHHHHHTTT-
T ss_pred cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcC---CHHHHHHHHHHHcCCCCEEEEEEcHH-HHHHHHHHHHhc-
Confidence 2357899999999998764211111111112211111 26788999999999999999977654 456677777664
Q ss_pred CcEEE---EEecCCCCccEEEEEEEecCccc
Q 025207 191 YAARI---VVQRSTEEENLHIIKFWRDFDIQ 218 (256)
Q Consensus 191 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~~ 218 (256)
|.... ++.........+++++.|+....
T Consensus 186 ~~~~~i~~v~~~~~~~~~~~lv~~~k~~~~~ 216 (260)
T 2ozv_A 186 FGGLEITLIHPRPGEDAVRMLVTAIKGSRAR 216 (260)
T ss_dssp EEEEEEEEEESSTTSCCCEEEEEEEETCCCC
T ss_pred CCceEEEEEcCCCCCCceEEEEEEEeCCCCC
Confidence 65433 34556667788999999976544
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-19 Score=147.91 Aligned_cols=184 Identities=14% Similarity=0.215 Sum_probs=123.6
Q ss_pred eeccCCccccC----CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025207 11 VSSHPEVYEPC----DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 11 ~~~~~~~~~p~----~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
+.+.++++.|+ +++..+++.++..+... ..++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.|
T Consensus 31 ~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~-~~~~~~vLDlG~G~G~~~~~la~~----~~~~~v~gvD~s~~~~~~a 105 (254)
T 2h00_A 31 IDIPLERLIPTVPLRLNYIHWVEDLIGHQDSD-KSTLRRGIDIGTGASCIYPLLGAT----LNGWYFLATEVDDMCFNYA 105 (254)
T ss_dssp CCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGG-GCCCCEEEEESCTTTTHHHHHHHH----HHCCEEEEEESCHHHHHHH
T ss_pred eecCccccCCCccchHHHHHHHHHHHhhcccc-CCCCCEEEEeCCChhHHHHHHHHh----CCCCeEEEEECCHHHHHHH
Confidence 56788999998 45666666665543210 125789999999999999888876 3457999999999999999
Q ss_pred HHHHHHcCCc--ceEEEcchhhc-hhhhc---CCCccEEEECCCCCCCCCc-------ccccccchhhhcCCC-------
Q 025207 87 RKTLEAHNVH--ADLINTDIASG-LEKRL---AGLVDVMVVNPPYVPTPED-------EVGREGIASAWAGGE------- 146 (256)
Q Consensus 87 ~~~~~~~~~~--~~~~~~d~~~~-~~~~~---~~~fD~Ii~npP~~~~~~~-------~~~~~~~~~~~~~~~------- 146 (256)
++++..+++. .+++++|+.+. ...+. +++||+|++||||+..... .....++..++.+..
T Consensus 106 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkpg 185 (254)
T 2h00_A 106 KKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEG 185 (254)
T ss_dssp HHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHH
T ss_pred HHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecC
Confidence 9999998876 48999997652 22222 2589999999999875511 111112222333222
Q ss_pred CcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025207 147 NGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 147 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
....+...++....++|+++|.++..........++.+.+++.||....+...
T Consensus 186 G~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 186 GELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp THHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred CEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEE
Confidence 33456667777778889999988875444444478889999999987655433
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=142.34 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=105.7
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+...+ ..+++.+..+.+.+++.+......++.+|||+|||+|.+++.++.. +..+|+|+|+++.+++.|++|+
T Consensus 15 l~~~~--~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-----~~~~v~~vD~~~~~~~~a~~~~ 87 (189)
T 3p9n_A 15 IAVPP--RGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-----GAASVLFVESDQRSAAVIARNI 87 (189)
T ss_dssp EECCS--CCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-----TCSEEEEEECCHHHHHHHHHHH
T ss_pred ecCCC--CCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-----CCCeEEEEECCHHHHHHHHHHH
Confidence 34444 4555566777777776664332247899999999999998876653 3458999999999999999999
Q ss_pred HHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh--ccccCe
Q 025207 91 EAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK--LLSKRG 167 (256)
Q Consensus 91 ~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG 167 (256)
..+++.. +++++|+.+......+++||+|++||||.... .....++..+.+ +|+|||
T Consensus 88 ~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~--------------------~~~~~~l~~~~~~~~L~pgG 147 (189)
T 3p9n_A 88 EALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDS--------------------ADVDAILAALGTNGWTREGT 147 (189)
T ss_dssp HHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCH--------------------HHHHHHHHHHHHSSSCCTTC
T ss_pred HHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCCcch--------------------hhHHHHHHHHHhcCccCCCe
Confidence 9988743 89999998876544468999999999986421 236788888888 999999
Q ss_pred EEEEEEeCC
Q 025207 168 WLYLVTLTA 176 (256)
Q Consensus 168 ~l~~~~~~~ 176 (256)
++++.....
T Consensus 148 ~l~~~~~~~ 156 (189)
T 3p9n_A 148 VAVVERATT 156 (189)
T ss_dssp EEEEEEETT
T ss_pred EEEEEecCC
Confidence 999977643
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=139.39 Aligned_cols=163 Identities=16% Similarity=0.104 Sum_probs=117.8
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 13 SHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
..+.++.|++++ ...++. +.+ ..++.+|||+|||+|.+++.+++. .|+++++|+|+++.+++.|++++..
T Consensus 18 ~~~~~~~~~p~~-~~~~~~-~~f----~~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~gvD~s~~~l~~a~~~~~~ 87 (214)
T 1yzh_A 18 ANPQYVVLNPLE-AKAKWR-DLF----GNDNPIHVEVGSGKGAFVSGMAKQ----NPDINYIGIDIQKSVLSYALDKVLE 87 (214)
T ss_dssp TCTTTEECCGGG-TTTTHH-HHH----TSCCCEEEEESCTTSHHHHHHHHH----CTTSEEEEEESCHHHHHHHHHHHHH
T ss_pred hCCCEEecChhh-cccCHH-HHc----CCCCCeEEEEccCcCHHHHHHHHH----CCCCCEEEEEcCHHHHHHHHHHHHH
Confidence 456677777764 222322 222 246789999999999999988887 6788999999999999999999998
Q ss_pred cCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 93 HNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 93 ~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+++.. .++.+|+.+....+.+++||+|++++|-.... ..++... .....++..+.++|+|||++++
T Consensus 88 ~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~----~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~ 154 (214)
T 1yzh_A 88 VGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPK----KRHEKRR---------LTYKTFLDTFKRILPENGEIHF 154 (214)
T ss_dssp HCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCS----GGGGGGS---------TTSHHHHHHHHHHSCTTCEEEE
T ss_pred cCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccc----cchhhhc---------cCCHHHHHHHHHHcCCCcEEEE
Confidence 88754 89999998743223457899999997632111 0011110 0146789999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 172 VTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
.+........+.+.+.+.||....+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 155 KTDNRGLFEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp EESCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred EeCCHHHHHHHHHHHHHCCCeeeeccc
Confidence 765444456777888888988765553
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-18 Score=141.97 Aligned_cols=109 Identities=20% Similarity=0.203 Sum_probs=88.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|..++.+++.+. .++++|+|+|+|+.|++.|++++...+.. .+++++|+.+.. .+.||+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~--~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~----~~~~d~ 142 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIH--HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA----IENASM 142 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCC--SSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC----CCSEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcC--CCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc----cccccc
Confidence 6889999999999999988888654 35789999999999999999999877654 389999987752 257999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..+.+.+.. ....+++++++.|||||++++...
T Consensus 143 v~~~~~l~~~~~~-------------------~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 143 VVLNFTLQFLEPS-------------------ERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeeeeeeecCch-------------------hHhHHHHHHHHHcCCCcEEEEEec
Confidence 9997654433321 246789999999999999998764
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-18 Score=136.01 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=114.9
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 13 SHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
-.+.++.+.+++ ...+|.. .+ ..++.+|||+|||+|.+++.+++. .|+++++|+|+++.+++.|++++..
T Consensus 15 ~~~~~~~~~~~~-~~~~~~~-~f----~~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~giD~s~~~l~~a~~~~~~ 84 (213)
T 2fca_A 15 ENADIAISNPAD-YKGKWNT-VF----GNDNPIHIEVGTGKGQFISGMAKQ----NPDINYIGIELFKSVIVTAVQKVKD 84 (213)
T ss_dssp HTTTTBCSCGGG-GTTCHHH-HH----TSCCCEEEEECCTTSHHHHHHHHH----CTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred hCccEEecCccc-cCCCHHH-Hc----CCCCceEEEEecCCCHHHHHHHHH----CCCCCEEEEEechHHHHHHHHHHHH
Confidence 355666666543 2233322 22 246789999999999999988887 6788999999999999999999998
Q ss_pred cCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 93 HNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 93 ~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+++.+ .++.+|+.+....+.+++||.|+++.|-..... .+. ... .....++..+.++|||||++++
T Consensus 85 ~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~----~~~-~~r--------l~~~~~l~~~~~~LkpgG~l~~ 151 (213)
T 2fca_A 85 SEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKK----RHE-KRR--------LTYSHFLKKYEEVMGKGGSIHF 151 (213)
T ss_dssp SCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSG----GGG-GGS--------TTSHHHHHHHHHHHTTSCEEEE
T ss_pred cCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCc----ccc-ccc--------cCcHHHHHHHHHHcCCCCEEEE
Confidence 88765 899999987432244678999998754211000 000 000 0136789999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 172 VTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.+.......++...+.+.||....+.
T Consensus 152 ~td~~~~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 152 KTDNRGLFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp EESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EeCCHHHHHHHHHHHHHCCCcccccc
Confidence 77555455677788888888765443
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=139.48 Aligned_cols=122 Identities=14% Similarity=0.156 Sum_probs=102.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|.+++.+++. ++. +|+|+|+++.+++.|++|+..+++.. +++++|+.+... +++||+
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~----~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---~~~fD~ 195 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVY----GKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---ENIADR 195 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH----TCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---CSCEEE
T ss_pred CCCCEEEEecccCCHHHHHHHHh----CCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---cCCccE
Confidence 46899999999999999999887 333 79999999999999999999999864 799999988754 578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC------CCCHHHHHHHHHHcCCc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT------ANDPSQICLQMMEKGYA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~~~~~~~g~~ 192 (256)
|+++||+. ...++..+.++|+|||++++.+.. ......+.+.+.+.|+.
T Consensus 196 Vi~~~p~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 196 ILMGYVVR-------------------------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYD 250 (278)
T ss_dssp EEECCCSS-------------------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCE
T ss_pred EEECCchh-------------------------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCe
Confidence 99999963 245688889999999999997765 24456788889999998
Q ss_pred EEE
Q 025207 193 ARI 195 (256)
Q Consensus 193 ~~~ 195 (256)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 766
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-17 Score=132.04 Aligned_cols=135 Identities=17% Similarity=0.257 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+...++..+. ..++.+|||+|||+|.+++.+++. +|..+++|+|+++.+++.|++++..++++. +++.+|
T Consensus 26 ~~i~~~~l~~l~---~~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d 98 (204)
T 3e05_A 26 QEVRAVTLSKLR---LQDDLVMWDIGAGSASVSIEASNL----MPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAF 98 (204)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEETCTTCHHHHHHHHH----CTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECC
T ss_pred HHHHHHHHHHcC---CCCCCEEEEECCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 334444555543 357899999999999999988887 667899999999999999999999888754 899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
+.+.... ..+||+|+++.++. ....+++.+.++|+|||++++.........++.
T Consensus 99 ~~~~~~~--~~~~D~i~~~~~~~------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 152 (204)
T 3e05_A 99 APEGLDD--LPDPDRVFIGGSGG------------------------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAV 152 (204)
T ss_dssp TTTTCTT--SCCCSEEEESCCTT------------------------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHH
T ss_pred hhhhhhc--CCCCCEEEECCCCc------------------------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHH
Confidence 8766443 26799999987653 157889999999999999999877666677889
Q ss_pred HHHHHcCCc
Q 025207 184 LQMMEKGYA 192 (256)
Q Consensus 184 ~~~~~~g~~ 192 (256)
+.+.+.||.
T Consensus 153 ~~l~~~g~~ 161 (204)
T 3e05_A 153 EFLEDHGYM 161 (204)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHCCCc
Confidence 999999984
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-18 Score=147.04 Aligned_cols=143 Identities=22% Similarity=0.280 Sum_probs=113.6
Q ss_pred eeeccCCccc---cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025207 10 LVSSHPEVYE---PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 10 ~~~~~~~~~~---p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+..++++|. +...++.+.+.+.+.+.. ...++.+|||+|||+|.+++.+++. +++|+++|+++.+++.|
T Consensus 199 ~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~-~~~~~~~VLDlGcG~G~~~~~la~~------g~~V~gvDis~~al~~A 271 (381)
T 3dmg_A 199 TFHHLPGVFSAGKVDPASLLLLEALQERLGP-EGVRGRQVLDLGAGYGALTLPLARM------GAEVVGVEDDLASVLSL 271 (381)
T ss_dssp EEEECTTCTTTTSCCHHHHHHHHHHHHHHCT-TTTTTCEEEEETCTTSTTHHHHHHT------TCEEEEEESBHHHHHHH
T ss_pred EEEeCCCceeCCCCCHHHHHHHHHHHHhhcc-cCCCCCEEEEEeeeCCHHHHHHHHc------CCEEEEEECCHHHHHHH
Confidence 4667888888 444578888888775421 1236789999999999999888775 45999999999999999
Q ss_pred HHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 87 RKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 87 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
++|+..+++..+++.+|+.+...+ +++||+|++||||+..... .......++..+.++|+||
T Consensus 272 ~~n~~~~~~~v~~~~~D~~~~~~~--~~~fD~Ii~npp~~~~~~~----------------~~~~~~~~l~~~~~~LkpG 333 (381)
T 3dmg_A 272 QKGLEANALKAQALHSDVDEALTE--EARFDIIVTNPPFHVGGAV----------------ILDVAQAFVNVAAARLRPG 333 (381)
T ss_dssp HHHHHHTTCCCEEEECSTTTTSCT--TCCEEEEEECCCCCTTCSS----------------CCHHHHHHHHHHHHHEEEE
T ss_pred HHHHHHcCCCeEEEEcchhhcccc--CCCeEEEEECCchhhcccc----------------cHHHHHHHHHHHHHhcCcC
Confidence 999999988889999999876432 4789999999999752221 1234678999999999999
Q ss_pred eEEEEEEeCCC
Q 025207 167 GWLYLVTLTAN 177 (256)
Q Consensus 167 G~l~~~~~~~~ 177 (256)
|+++++.....
T Consensus 334 G~l~iv~n~~l 344 (381)
T 3dmg_A 334 GVFFLVSNPFL 344 (381)
T ss_dssp EEEEEEECTTS
T ss_pred cEEEEEEcCCC
Confidence 99999876554
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=144.19 Aligned_cols=154 Identities=22% Similarity=0.180 Sum_probs=112.8
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceE
Q 025207 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADL 99 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~ 99 (256)
.+..+.++..++.... ..++.+|||+|||+|.++++++.... ++..++|+|+++.+++.|++|+...++. .++
T Consensus 185 a~l~~~la~~l~~~~~---~~~~~~vLD~gcGsG~~~ie~a~~~~---~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~ 258 (354)
T 3tma_A 185 GSLTPVLAQALLRLAD---ARPGMRVLDPFTGSGTIALEAASTLG---PTSPVYAGDLDEKRLGLAREAALASGLSWIRF 258 (354)
T ss_dssp CSCCHHHHHHHHHHTT---CCTTCCEEESSCTTSHHHHHHHHHHC---TTSCEEEEESCHHHHHHHHHHHHHTTCTTCEE
T ss_pred CCcCHHHHHHHHHHhC---CCCCCEEEeCCCCcCHHHHHHHHhhC---CCceEEEEECCHHHHHHHHHHHHHcCCCceEE
Confidence 3345667777766543 24678999999999999999998741 5679999999999999999999999875 499
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025207 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
.++|+.+...+ ...||+|++||||....... ......+..+++.+.++|+|||+++++++. .
T Consensus 259 ~~~D~~~~~~~--~~~~D~Ii~npPyg~r~~~~-------------~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~---~ 320 (354)
T 3tma_A 259 LRADARHLPRF--FPEVDRILANPPHGLRLGRK-------------EGLFHLYWDFLRGALALLPPGGRVALLTLR---P 320 (354)
T ss_dssp EECCGGGGGGT--CCCCSEEEECCCSCC----C-------------HHHHHHHHHHHHHHHHTSCTTCEEEEEESC---H
T ss_pred EeCChhhCccc--cCCCCEEEECCCCcCccCCc-------------ccHHHHHHHHHHHHHHhcCCCcEEEEEeCC---H
Confidence 99999886433 35689999999997533211 001234578899999999999999998752 2
Q ss_pred HHHHHHHHHcCCcEEEEEec
Q 025207 180 SQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 180 ~~~~~~~~~~g~~~~~~~~~ 199 (256)
......+. .|++.......
T Consensus 321 ~~~~~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 321 ALLKRALP-PGFALRHARVV 339 (354)
T ss_dssp HHHHHHCC-TTEEEEEEEEC
T ss_pred HHHHHHhh-cCcEEEEEEEE
Confidence 33444444 77766554443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=131.73 Aligned_cols=137 Identities=14% Similarity=0.119 Sum_probs=104.4
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.++ ..+++.+..+++.+++.+... .++.+|||+|||+|.+++.++.. +..+|+|+|+++.+++.|++++
T Consensus 16 ~~~~~~-~~~rp~~~~~~~~~~~~l~~~--~~~~~vLD~GcG~G~~~~~~~~~-----~~~~v~~vD~~~~~~~~a~~~~ 87 (187)
T 2fhp_A 16 LKALDG-DNTRPTTDKVKESIFNMIGPY--FDGGMALDLYSGSGGLAIEAVSR-----GMDKSICIEKNFAALKVIKENI 87 (187)
T ss_dssp CCCCCC-CSSCCCCHHHHHHHHHHHCSC--CSSCEEEETTCTTCHHHHHHHHT-----TCSEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCC-CCcCcCHHHHHHHHHHHHHhh--cCCCCEEEeCCccCHHHHHHHHc-----CCCEEEEEECCHHHHHHHHHHH
Confidence 334444 367777888888888876432 36789999999999998877663 3468999999999999999999
Q ss_pred HHcCCc--ceEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH--hhccc
Q 025207 91 EAHNVH--ADLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA--DKLLS 164 (256)
Q Consensus 91 ~~~~~~--~~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~Lk 164 (256)
..+++. .+++.+|+.+..... .+++||+|++||||.... ...++..+ .++|+
T Consensus 88 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~----------------------~~~~~~~l~~~~~L~ 145 (187)
T 2fhp_A 88 AITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQE----------------------IVSQLEKMLERQLLT 145 (187)
T ss_dssp HHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCC----------------------HHHHHHHHHHTTCEE
T ss_pred HHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchh----------------------HHHHHHHHHHhcccC
Confidence 998874 489999998865422 257899999999975211 23445555 88999
Q ss_pred cCeEEEEEEeCCC
Q 025207 165 KRGWLYLVTLTAN 177 (256)
Q Consensus 165 pgG~l~~~~~~~~ 177 (256)
|||++++..+...
T Consensus 146 ~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 146 NEAVIVCETDKTV 158 (187)
T ss_dssp EEEEEEEEEETTC
T ss_pred CCCEEEEEeCCcc
Confidence 9999999776554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-18 Score=147.34 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=104.4
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+..+|++|.+... ......+++.+. ..++.+|||+|||+|.+++.+++. +|+++|+|+|+++.+++.|++|+
T Consensus 195 ~~~~pg~Fs~~~~-d~~~~~ll~~l~---~~~~~~VLDlGcG~G~~s~~la~~----~p~~~V~gvD~s~~al~~Ar~n~ 266 (375)
T 4dcm_A 195 IHNHANVFSRTGL-DIGARFFMQHLP---ENLEGEIVDLGCGNGVIGLTLLDK----NPQAKVVFVDESPMAVASSRLNV 266 (375)
T ss_dssp EEECTTCTTCSSC-CHHHHHHHHTCC---CSCCSEEEEETCTTCHHHHHHHHH----CTTCEEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCcccCCcc-cHHHHHHHHhCc---ccCCCeEEEEeCcchHHHHHHHHH----CCCCEEEEEECcHHHHHHHHHHH
Confidence 5678888887332 111233444443 245689999999999999999887 77889999999999999999999
Q ss_pred HHcCCc----ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 91 EAHNVH----ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 91 ~~~~~~----~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
..+++. .+++.+|+.+.. .+++||+|++||||+...... ......+++.+.++||||
T Consensus 267 ~~ngl~~~~~v~~~~~D~~~~~---~~~~fD~Ii~nppfh~~~~~~----------------~~~~~~~l~~~~~~Lkpg 327 (375)
T 4dcm_A 267 ETNMPEALDRCEFMINNALSGV---EPFRFNAVLCNPPFHQQHALT----------------DNVAWEMFHHARRCLKIN 327 (375)
T ss_dssp HHHCGGGGGGEEEEECSTTTTC---CTTCEEEEEECCCC-----------------------CCHHHHHHHHHHHHEEEE
T ss_pred HHcCCCcCceEEEEechhhccC---CCCCeeEEEECCCcccCcccC----------------HHHHHHHHHHHHHhCCCC
Confidence 998865 367999988743 347899999999997532211 012457899999999999
Q ss_pred eEEEEEEeCCCCH
Q 025207 167 GWLYLVTLTANDP 179 (256)
Q Consensus 167 G~l~~~~~~~~~~ 179 (256)
|+++++.......
T Consensus 328 G~l~iv~n~~~~~ 340 (375)
T 4dcm_A 328 GELYIVANRHLDY 340 (375)
T ss_dssp EEEEEEEETTSCH
T ss_pred cEEEEEEECCcCH
Confidence 9999987655433
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=131.69 Aligned_cols=146 Identities=17% Similarity=0.310 Sum_probs=112.7
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+...+++|.|... ....+.+++.+. ..++.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++++
T Consensus 25 ~~~~~~~~~~~~~-~~~~~~l~~~~~---~~~~~~vLdiG~G~G~~~~~~~~~------~~~v~~~D~~~~~~~~a~~~~ 94 (194)
T 1dus_A 25 FKTDSGVFSYGKV-DKGTKILVENVV---VDKDDDILDLGCGYGVIGIALADE------VKSTTMADINRRAIKLAKENI 94 (194)
T ss_dssp EEEETTSTTTTSC-CHHHHHHHHHCC---CCTTCEEEEETCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCcCCcccc-chHHHHHHHHcc---cCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHH
Confidence 4467788888732 133344444443 247789999999999988766554 469999999999999999999
Q ss_pred HHcCCc---ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025207 91 EAHNVH---ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 91 ~~~~~~---~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
..+++. .+++.+|+.+... +++||+|++++||... ......+++.+.++|+|||
T Consensus 95 ~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~~~--------------------~~~~~~~l~~~~~~L~~gG 151 (194)
T 1dus_A 95 KLNNLDNYDIRVVHSDLYENVK---DRKYNKIITNPPIRAG--------------------KEVLHRIIEEGKELLKDNG 151 (194)
T ss_dssp HHTTCTTSCEEEEECSTTTTCT---TSCEEEEEECCCSTTC--------------------HHHHHHHHHHHHHHEEEEE
T ss_pred HHcCCCccceEEEECchhcccc---cCCceEEEECCCcccc--------------------hhHHHHHHHHHHHHcCCCC
Confidence 988875 5889999877533 4689999999998631 2236788999999999999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHc
Q 025207 168 WLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
++++..+......++.+.+.+.
T Consensus 152 ~l~~~~~~~~~~~~~~~~l~~~ 173 (194)
T 1dus_A 152 EIWVVIQTKQGAKSLAKYMKDV 173 (194)
T ss_dssp EEEEEEESTHHHHHHHHHHHHH
T ss_pred EEEEEECCCCChHHHHHHHHHH
Confidence 9999888776666677888776
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-17 Score=129.41 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=107.6
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcc
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d 103 (256)
.+...++..+. ..++.+|||+|||+|.+++.+++. +++|+|+|+++.+++.|++++..+++. .+++.+|
T Consensus 42 ~~~~~~l~~l~---~~~~~~vLDlGcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d 112 (204)
T 3njr_A 42 PMRALTLAALA---PRRGELLWDIGGGSGSVSVEWCLA------GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGT 112 (204)
T ss_dssp HHHHHHHHHHC---CCTTCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HHHHHHHHhcC---CCCCCEEEEecCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCc
Confidence 44444555443 257899999999999999888775 468999999999999999999999887 3899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
+.+.... ...||+|+++.... .. +++.+.++|||||++++.........++.
T Consensus 113 ~~~~~~~--~~~~D~v~~~~~~~-------------------------~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 164 (204)
T 3njr_A 113 APAALAD--LPLPEAVFIGGGGS-------------------------QA-LYDRLWEWLAPGTRIVANAVTLESETLLT 164 (204)
T ss_dssp TTGGGTT--SCCCSEEEECSCCC-------------------------HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHH
T ss_pred hhhhccc--CCCCCEEEECCccc-------------------------HH-HHHHHHHhcCCCcEEEEEecCcccHHHHH
Confidence 9885433 25799999975320 34 89999999999999999887766677888
Q ss_pred HHHHHcCCcEEEEE
Q 025207 184 LQMMEKGYAARIVV 197 (256)
Q Consensus 184 ~~~~~~g~~~~~~~ 197 (256)
+.+++.|++...+.
T Consensus 165 ~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 165 QLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHhCCCcEEEEE
Confidence 99999998765543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=131.64 Aligned_cols=125 Identities=18% Similarity=0.300 Sum_probs=105.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.+++.+++. +..+++|+|+++.+++.|++++..++.. .+++.+|+.+.. +++||+|
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~fD~i 129 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-----GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV----DGKFDLI 129 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC----CSCEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC----CCCceEE
Confidence 46899999999999998887653 3459999999999999999999988877 589999987642 4789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++++ ..+..+++.+.++|+|||++++.........++...+.+.||....+..
T Consensus 130 ~~~~~~------------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 130 VANILA------------------------EILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMR 184 (205)
T ss_dssp EEESCH------------------------HHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEE
T ss_pred EECCcH------------------------HHHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeec
Confidence 999774 2257889999999999999999776666788899999999998766544
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=133.21 Aligned_cols=126 Identities=15% Similarity=0.202 Sum_probs=92.8
Q ss_pred chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--c-ceE
Q 025207 23 DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--H-ADL 99 (256)
Q Consensus 23 ~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~-~~~ 99 (256)
.+..+.+.+.+.+... .++.+|||+|||+|.+++.++.. + ...|+|+|+|+.+++.|++|+..+++ + .++
T Consensus 36 ~~~~~~~~l~~~l~~~--~~~~~vLDlGcGtG~~~~~~~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~ 108 (201)
T 2ift_A 36 TGDRVKETLFNWLMPY--IHQSECLDGFAGSGSLGFEALSR----Q-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEV 108 (201)
T ss_dssp --CHHHHHHHHHHHHH--HTTCEEEETTCTTCHHHHHHHHT----T-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred CHHHHHHHHHHHHHHh--cCCCeEEEcCCccCHHHHHHHHc----c-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEE
Confidence 3344445554444321 25789999999999998876654 2 24899999999999999999999987 3 489
Q ss_pred EEcchhhchhhhcCCC-ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH--hhccccCeEEEEEEeCC
Q 025207 100 INTDIASGLEKRLAGL-VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA--DKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~-fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~ 176 (256)
+.+|+.+......+++ ||+|+++|||.. . ....++..+ .++|+|||++++.....
T Consensus 109 ~~~d~~~~~~~~~~~~~fD~I~~~~~~~~-~---------------------~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 109 INQSSLDFLKQPQNQPHFDVVFLDPPFHF-N---------------------LAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp ECSCHHHHTTSCCSSCCEEEEEECCCSSS-C---------------------HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EECCHHHHHHhhccCCCCCEEEECCCCCC-c---------------------cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 9999987654323568 999999999741 1 145667777 67899999999977654
Q ss_pred C
Q 025207 177 N 177 (256)
Q Consensus 177 ~ 177 (256)
.
T Consensus 167 ~ 167 (201)
T 2ift_A 167 K 167 (201)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-17 Score=127.94 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=84.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.+++.+++. +.+|+|+|+++.+++.|++++..+++.. ++++.+..... ...+++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~------~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~-~~~~~~fD~v 93 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD-HYVREPIRAA 93 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG-GTCCSCEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH-hhccCCcCEE
Confidence 47899999999999998877764 5699999999999999999999888754 78887765532 2336789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+++++|.+....... ........+++.+.++|||||+++++...
T Consensus 94 ~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 94 IFNLGYLPSADKSVI------------TKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEEEC-----------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred EEeCCCCCCcchhcc------------cChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 999888654322110 01123467789999999999999987653
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=130.51 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=95.1
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
....+++.+..+.+.+.+.+... .++.+|||+|||+|.+++.+++. +..+++|+|+++.+++.|++++..+++
T Consensus 7 ~~~~~rp~~~~~~~~~~~~l~~~--~~~~~vLDlGcG~G~~~~~l~~~-----~~~~v~~vD~~~~~~~~a~~~~~~~~~ 79 (177)
T 2esr_A 7 DGKITRPTSDKVRGAIFNMIGPY--FNGGRVLDLFAGSGGLAIEAVSR-----GMSAAVLVEKNRKAQAIIQDNIIMTKA 79 (177)
T ss_dssp -----------CHHHHHHHHCSC--CCSCEEEEETCTTCHHHHHHHHT-----TCCEEEEECCCHHHHHHHHHHHHTTTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHhh--cCCCeEEEeCCCCCHHHHHHHHc-----CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 34456666777778887776421 46789999999999998887764 345899999999999999999998887
Q ss_pred c--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hccccCeEEEE
Q 025207 96 H--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLSKRGWLYL 171 (256)
Q Consensus 96 ~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~ 171 (256)
. .+++.+|+.+..+. .+++||+|+++|||.. .....++..+. ++|+|||++++
T Consensus 80 ~~~~~~~~~d~~~~~~~-~~~~fD~i~~~~~~~~----------------------~~~~~~~~~l~~~~~L~~gG~l~~ 136 (177)
T 2esr_A 80 ENRFTLLKMEAERAIDC-LTGRFDLVFLDPPYAK----------------------ETIVATIEALAAKNLLSEQVMVVC 136 (177)
T ss_dssp GGGEEEECSCHHHHHHH-BCSCEEEEEECCSSHH----------------------HHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCceEEEECcHHHhHHh-hcCCCCEEEECCCCCc----------------------chHHHHHHHHHhCCCcCCCcEEEE
Confidence 5 38999999885433 3467999999999731 12345566665 89999999999
Q ss_pred EEeCCC
Q 025207 172 VTLTAN 177 (256)
Q Consensus 172 ~~~~~~ 177 (256)
......
T Consensus 137 ~~~~~~ 142 (177)
T 2esr_A 137 ETDKTV 142 (177)
T ss_dssp EEETTC
T ss_pred EECCcc
Confidence 876554
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-17 Score=134.04 Aligned_cols=137 Identities=15% Similarity=0.214 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
+..+.+.+...+ .++.+|||+|||+|.+++.+++. + .+|+|+|+++.+++.|++|+..+++..++..+|
T Consensus 107 t~~~~~~l~~~~-----~~~~~VLDiGcG~G~l~~~la~~----g--~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d 175 (254)
T 2nxc_A 107 TRLALKALARHL-----RPGDKVLDLGTGSGVLAIAAEKL----G--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS 175 (254)
T ss_dssp HHHHHHHHHHHC-----CTTCEEEEETCTTSHHHHHHHHT----T--CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESC
T ss_pred HHHHHHHHHHhc-----CCCCEEEEecCCCcHHHHHHHHh----C--CeEEEEECCHHHHHHHHHHHHHcCCcEEEEECC
Confidence 344555554432 47899999999999999887775 3 399999999999999999999988767888999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
+.+..+ +++||+|++|++. .....++..+.++|+|||+++++........++.
T Consensus 176 ~~~~~~---~~~fD~Vv~n~~~------------------------~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~ 228 (254)
T 2nxc_A 176 LEAALP---FGPFDLLVANLYA------------------------ELHAALAPRYREALVPGGRALLTGILKDRAPLVR 228 (254)
T ss_dssp HHHHGG---GCCEEEEEEECCH------------------------HHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHH
T ss_pred hhhcCc---CCCCCEEEECCcH------------------------HHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHH
Confidence 877532 3689999998753 2256889999999999999999877666788999
Q ss_pred HHHHHcCCcEEEEEe
Q 025207 184 LQMMEKGYAARIVVQ 198 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~ 198 (256)
+.+.+.||.......
T Consensus 229 ~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 229 EAMAGAGFRPLEEAA 243 (254)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHCCCEEEEEec
Confidence 999999998766544
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-17 Score=133.03 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=113.2
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceE
Q 025207 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADL 99 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~ 99 (256)
+........++..+..+ .++.+|||+|||+|.++..+++. .+. +|+|+|+++.+++.|++++..+++. .++
T Consensus 28 ~~~~~~~~~~l~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~ 100 (257)
T 3f4k_A 28 PGSPEATRKAVSFINEL--TDDAKIADIGCGTGGQTLFLADY----VKG-QITGIDLFPDFIEIFNENAVKANCADRVKG 100 (257)
T ss_dssp SCCHHHHHHHHTTSCCC--CTTCEEEEETCTTSHHHHHHHHH----CCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred CCCHHHHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHh----CCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEE
Confidence 33466667777766433 46789999999999999888887 443 9999999999999999999998876 489
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC----
Q 025207 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---- 175 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---- 175 (256)
+.+|+.+. ++.+++||+|+++..+.+. + ...+++.+.++|||||++++..+.
T Consensus 101 ~~~d~~~~--~~~~~~fD~v~~~~~l~~~-~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 156 (257)
T 3f4k_A 101 ITGSMDNL--PFQNEELDLIWSEGAIYNI-G---------------------FERGMNEWSKYLKKGGFIAVSEASWFTS 156 (257)
T ss_dssp EECCTTSC--SSCTTCEEEEEEESCSCCC-C---------------------HHHHHHHHHTTEEEEEEEEEEEEEESSS
T ss_pred EECChhhC--CCCCCCEEEEEecChHhhc-C---------------------HHHHHHHHHHHcCCCcEEEEEEeeccCC
Confidence 99999665 2345899999998776543 1 467899999999999999998743
Q ss_pred ----------------CCCHHHHHHHHHHcCCcEEEEE
Q 025207 176 ----------------ANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 176 ----------------~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.....++.+.+++.||......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 157 ERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp CCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred CChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 1134567788888898876644
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=132.07 Aligned_cols=140 Identities=15% Similarity=0.173 Sum_probs=105.2
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceE
Q 025207 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADL 99 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~ 99 (256)
+++++.+++.+++.+......++.+|||+|||+|.+++.++.. .|+.+++|+|+++.+++.+++++..+++. ..+
T Consensus 44 ~~~~~~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~ 119 (207)
T 1jsx_A 44 RDPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIV----RPEAHFTLLDSLGKRVRFLRQVQHELKLENIEP 119 (207)
T ss_dssp ----CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHH----CTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEE
T ss_pred CCHHHHHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEE
Confidence 5556677777777664221124789999999999999888877 56789999999999999999999988876 489
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025207 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
+.+|+.+... .++||+|+++.. .....++..+.++|+|||++++... ....
T Consensus 120 ~~~d~~~~~~---~~~~D~i~~~~~-------------------------~~~~~~l~~~~~~L~~gG~l~~~~~-~~~~ 170 (207)
T 1jsx_A 120 VQSRVEEFPS---EPPFDGVISRAF-------------------------ASLNDMVSWCHHLPGEQGRFYALKG-QMPE 170 (207)
T ss_dssp EECCTTTSCC---CSCEEEEECSCS-------------------------SSHHHHHHHHTTSEEEEEEEEEEES-SCCH
T ss_pred EecchhhCCc---cCCcCEEEEecc-------------------------CCHHHHHHHHHHhcCCCcEEEEEeC-CCch
Confidence 9999887542 368999998631 0156889999999999999999654 4455
Q ss_pred HHHHHHHHHcCCcEEE
Q 025207 180 SQICLQMMEKGYAARI 195 (256)
Q Consensus 180 ~~~~~~~~~~g~~~~~ 195 (256)
+++...+. ||....
T Consensus 171 ~~~~~~~~--g~~~~~ 184 (207)
T 1jsx_A 171 DEIALLPE--EYQVES 184 (207)
T ss_dssp HHHHTSCT--TEEEEE
T ss_pred HHHHHHhc--CCceee
Confidence 66666554 777655
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-18 Score=137.26 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=100.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhh-hcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEK-RLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~-~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. .|++.|+|+|+++.+++.|++++..+++.+ .++.+|+.+.++. +.+++||.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~----~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKD----RPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHH----CTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHH----CCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChhe
Confidence 46789999999999999988887 788899999999999999999999888765 9999999886543 45689999
Q ss_pred EEEC--CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025207 119 MVVN--PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~n--pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
|+++ +||...... ..++ ....+++.+.++|||||++++.+......+++...+...
T Consensus 109 v~~~~~~p~~~~~~~-------~rr~--------~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~ 166 (218)
T 3dxy_A 109 VQLFFPDPWHKARHN-------KRRI--------VQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSI 166 (218)
T ss_dssp EEEESCCCCCSGGGG-------GGSS--------CSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred EEEeCCCCccchhhh-------hhhh--------hhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 9998 455322110 0011 124689999999999999999876555455666666554
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=130.01 Aligned_cols=149 Identities=10% Similarity=0.073 Sum_probs=109.6
Q ss_pred ccCCchHHHHHHHHHhhccc---ccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 19 EPCDDSFALVDALLADRINL---VEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~---~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.++...+.+...+.+.+... ...++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.|++++..+++
T Consensus 44 ~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 119 (240)
T 1xdz_A 44 SITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKIC----FPHLHVTIVDSLNKRITFLEKLSEALQL 119 (240)
T ss_dssp SCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHH----CTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHhHHHhcccCCCCEEEEecCCCCHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 34555666666666554321 1136789999999999999888875 5678999999999999999999999887
Q ss_pred c-ceEEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 96 H-ADLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 96 ~-~~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
. .+++++|+.+.... ..+++||+|+++..- ....+++.+.++|+|||++++..
T Consensus 120 ~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 120 ENTTFCHDRAETFGQRKDVRESYDIVTARAVA-------------------------RLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp SSEEEEESCHHHHTTCTTTTTCEEEEEEECCS-------------------------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCEEEEeccHHHhcccccccCCccEEEEeccC-------------------------CHHHHHHHHHHhcCCCCEEEEEe
Confidence 5 48999998775321 124789999995410 15788999999999999999864
Q ss_pred eCCCCHH---HHHHHHHHcCCcEEEEE
Q 025207 174 LTANDPS---QICLQMMEKGYAARIVV 197 (256)
Q Consensus 174 ~~~~~~~---~~~~~~~~~g~~~~~~~ 197 (256)
. ..... ++.+.+...||......
T Consensus 175 g-~~~~~~~~~~~~~l~~~g~~~~~~~ 200 (240)
T 1xdz_A 175 A-ASAEEELNAGKKAITTLGGELENIH 200 (240)
T ss_dssp C-C-CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred C-CCchHHHHHHHHHHHHcCCeEeEEE
Confidence 3 22222 45667788898775543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=131.36 Aligned_cols=145 Identities=12% Similarity=0.089 Sum_probs=108.5
Q ss_pred hHHHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eE
Q 025207 24 SFALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DL 99 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~ 99 (256)
.+++...++..+..+. ..++.+|||+|||+|.+++.++.. .|+++|+++|+++.+++.|++|+..+++.+ ++
T Consensus 59 ~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~ 134 (249)
T 3g89_A 59 EEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIV----RPELELVLVDATRKKVAFVERAIEVLGLKGARA 134 (249)
T ss_dssp HHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHH----CTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred HHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHhCCCceEE
Confidence 3444455554443222 246789999999999999998887 678899999999999999999999999864 99
Q ss_pred EEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-
Q 025207 100 INTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN- 177 (256)
Q Consensus 100 ~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~- 177 (256)
+++|+.+.... ..+++||+|+++-. ..+..+++.+.++|||||++++......
T Consensus 135 ~~~d~~~~~~~~~~~~~fD~I~s~a~-------------------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~ 189 (249)
T 3g89_A 135 LWGRAEVLAREAGHREAYARAVARAV-------------------------APLCVLSELLLPFLEVGGAAVAMKGPRVE 189 (249)
T ss_dssp EECCHHHHTTSTTTTTCEEEEEEESS-------------------------CCHHHHHHHHGGGEEEEEEEEEEECSCCH
T ss_pred EECcHHHhhcccccCCCceEEEECCc-------------------------CCHHHHHHHHHHHcCCCeEEEEEeCCCcH
Confidence 99999876432 22478999999521 0157889999999999999998654322
Q ss_pred -CHHHHHHHHHHcCCcEEEEE
Q 025207 178 -DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 -~~~~~~~~~~~~g~~~~~~~ 197 (256)
...++...+...|+....+.
T Consensus 190 ~e~~~~~~~l~~~G~~~~~~~ 210 (249)
T 3g89_A 190 EELAPLPPALERLGGRLGEVL 210 (249)
T ss_dssp HHHTTHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEE
Confidence 12345677778898876554
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=127.90 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=99.2
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.++ +++.+..+.+.+.+.+... ..++.+|||+|||+|.+++.+++. ++ .++|+|+++.+++.|++++
T Consensus 14 ~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~----~~--~v~~vD~~~~~~~~a~~~~ 83 (171)
T 1ws6_A 14 LKVPAS---ARPSPVRLRKALFDYLRLR-YPRRGRFLDPFAGSGAVGLEAASE----GW--EAVLVEKDPEAVRLLKENV 83 (171)
T ss_dssp ECCCTT---CCCCCHHHHHHHHHHHHHH-CTTCCEEEEETCSSCHHHHHHHHT----TC--EEEEECCCHHHHHHHHHHH
T ss_pred ecCCCC---CCCCHHHHHHHHHHHHHhh-ccCCCeEEEeCCCcCHHHHHHHHC----CC--eEEEEeCCHHHHHHHHHHH
Confidence 445666 4444566666666655320 026789999999999998888775 33 5999999999999999999
Q ss_pred HHcCCcceEEEcchhhchhhhc--CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hccccC
Q 025207 91 EAHNVHADLINTDIASGLEKRL--AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLSKR 166 (256)
Q Consensus 91 ~~~~~~~~~~~~d~~~~~~~~~--~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~Lkpg 166 (256)
..++++.+++++|+.+...... .++||+|+++|||. .. ...+++.+. ++|+||
T Consensus 84 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~--~~---------------------~~~~~~~~~~~~~L~~g 140 (171)
T 1ws6_A 84 RRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA--MD---------------------LAALFGELLASGLVEAG 140 (171)
T ss_dssp HHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT--SC---------------------TTHHHHHHHHHTCEEEE
T ss_pred HHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc--hh---------------------HHHHHHHHHhhcccCCC
Confidence 9888755899999987544321 34899999999986 11 123344444 999999
Q ss_pred eEEEEEEeCCCC
Q 025207 167 GWLYLVTLTAND 178 (256)
Q Consensus 167 G~l~~~~~~~~~ 178 (256)
|++++.++....
T Consensus 141 G~~~~~~~~~~~ 152 (171)
T 1ws6_A 141 GLYVLQHPKDLY 152 (171)
T ss_dssp EEEEEEEETTSC
T ss_pred cEEEEEeCCccC
Confidence 999998775543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-16 Score=128.83 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=118.1
Q ss_pred eeccCCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 11 ~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
+.....-|+-+.. ...|+..++.-+..+..+++.+|||+|||+|.++..++..++ |+.+|+|+|+++.|++.++++
T Consensus 45 ~~~~~~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG---~~G~V~avD~s~~~~~~l~~~ 121 (233)
T 4df3_A 45 FRYNGEEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIG---PRGRIYGVEFAPRVMRDLLTV 121 (233)
T ss_dssp EEETTEEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHC---TTCEEEEEECCHHHHHHHHHH
T ss_pred EEcCCceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHh
Confidence 3344455665555 567777787777667778999999999999999999999874 677999999999999999887
Q ss_pred HHHcCCcceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 90 LEAHNVHADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 90 ~~~~~~~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
....+ +...+.+|..+... +...+.+|+|+++.++.. ....++.++.+.|||||+
T Consensus 122 a~~~~-ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~-----------------------~~~~~l~~~~r~LKpGG~ 177 (233)
T 4df3_A 122 VRDRR-NIFPILGDARFPEKYRHLVEGVDGLYADVAQPE-----------------------QAAIVVRNARFFLRDGGY 177 (233)
T ss_dssp STTCT-TEEEEESCTTCGGGGTTTCCCEEEEEECCCCTT-----------------------HHHHHHHHHHHHEEEEEE
T ss_pred hHhhc-CeeEEEEeccCccccccccceEEEEEEeccCCh-----------------------hHHHHHHHHHHhccCCCE
Confidence 65432 23677778766532 334578999999876531 145789999999999999
Q ss_pred EEEEEeCCC---------CHHHHHHHHHHcCCcEEEEE
Q 025207 169 LYLVTLTAN---------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 169 l~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++..... ...+..+.+++.||+.....
T Consensus 178 lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i 215 (233)
T 4df3_A 178 MLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVV 215 (233)
T ss_dssp EEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEE
Confidence 998653221 12345667788899876644
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-16 Score=125.12 Aligned_cols=118 Identities=21% Similarity=0.269 Sum_probs=92.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|.+++.+++.+. ++++++|+|+++.+++.|++++..+++. .+++++|+.+... ..+++||+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~ 96 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVG---ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-YIDCPVKA 96 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHC---TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-TCCSCEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-hccCCceE
Confidence 5788999999999999998888752 4569999999999999999999998873 3899999877642 34578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|++++||.+....... ........++..+.++|||||+++++..
T Consensus 97 v~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 97 VMFNLGYLPSGDHSIS------------TRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEEEESBCTTSCTTCB------------CCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEcCCcccCcccccc------------cCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 9999999543322110 0112345789999999999999998764
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=127.86 Aligned_cols=133 Identities=14% Similarity=0.212 Sum_probs=107.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..+++.. .++.+++|+|+++.+++.+++++...++. ..++.+|+.+.. +.+++||+|
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v 110 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMV---GEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP--LPDNTVDFI 110 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHH---TTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS--SCSSCEEEE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC--CCCCCeeEE
Confidence 577899999999999998888874 25679999999999999999999888875 489999987753 345789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------------CHHHHHHHHH
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------------DPSQICLQMM 187 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------~~~~~~~~~~ 187 (256)
+++..+.+.++ ...+++.+.++|+|||+++++..... ..+++...++
T Consensus 111 ~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 169 (219)
T 3dh0_A 111 FMAFTFHELSE---------------------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILE 169 (219)
T ss_dssp EEESCGGGCSS---------------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHH
T ss_pred EeehhhhhcCC---------------------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHH
Confidence 99866554322 46889999999999999999764322 3578999999
Q ss_pred HcCCcEEEEEec
Q 025207 188 EKGYAARIVVQR 199 (256)
Q Consensus 188 ~~g~~~~~~~~~ 199 (256)
+.||+.......
T Consensus 170 ~~Gf~~~~~~~~ 181 (219)
T 3dh0_A 170 DAGIRVGRVVEV 181 (219)
T ss_dssp HTTCEEEEEEEE
T ss_pred HCCCEEEEEEee
Confidence 999997766544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-17 Score=130.75 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=105.0
Q ss_pred cCCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 14 HPEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 14 ~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
..+.+.+... .....+++.+.+.. .++.+|||+|||+|.++..++.. ++..+++|+|+++.+++.|++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~ 75 (219)
T 3jwg_A 3 KNEETEKKLNLNQQRLGTVVAVLKS---VNAKKVIDLGCGEGNLLSLLLKD----KSFEQITGVDVSYSVLERAKDRLKI 75 (219)
T ss_dssp ---------CHHHHHHHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHTS----TTCCEEEEEESCHHHHHHHHHHHTG
T ss_pred ccccCCcCCcchHHHHHHHHHHHhh---cCCCEEEEecCCCCHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHHHHh
Confidence 3344444444 45555666665532 46789999999999988777665 5567999999999999999999877
Q ss_pred cCC------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 93 HNV------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 93 ~~~------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
+++ ..+++.+|+... +...++||+|+++..+.+.+++ ....+++.+.++||||
T Consensus 76 ~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~-------------------~~~~~l~~~~~~Lkpg 134 (219)
T 3jwg_A 76 DRLPEMQRKRISLFQSSLVYR--DKRFSGYDAATVIEVIEHLDEN-------------------RLQAFEKVLFEFTRPQ 134 (219)
T ss_dssp GGSCHHHHTTEEEEECCSSSC--CGGGTTCSEEEEESCGGGCCHH-------------------HHHHHHHHHHTTTCCS
T ss_pred hccccccCcceEEEeCccccc--ccccCCCCEEEEHHHHHhCCHH-------------------HHHHHHHHHHHhhCCC
Confidence 665 348899998544 2234789999997665544321 2568899999999999
Q ss_pred eEEEEEEeCCC---------------------CHHHHH----HHHHHcCCcEEEE
Q 025207 167 GWLYLVTLTAN---------------------DPSQIC----LQMMEKGYAARIV 196 (256)
Q Consensus 167 G~l~~~~~~~~---------------------~~~~~~----~~~~~~g~~~~~~ 196 (256)
|+++.+..... ...++. ..+.+.||++...
T Consensus 135 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 135 TVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp EEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred EEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEE
Confidence 97665432211 234455 6777889876554
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-16 Score=123.80 Aligned_cols=140 Identities=13% Similarity=0.085 Sum_probs=108.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++. ....++.+|+.+. ++.+++||+|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~--~~~~~~fD~v~~ 108 (203)
T 3h2b_A 41 VDGVILDVGSGTGRWTGHLASL------GHQIEGLEPATRLVELARQTH----PSVTFHHGTITDL--SDSPKRWAGLLA 108 (203)
T ss_dssp CCSCEEEETCTTCHHHHHHHHT------TCCEEEECCCHHHHHHHHHHC----TTSEEECCCGGGG--GGSCCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhC----CCCeEEeCccccc--ccCCCCeEEEEe
Confidence 3789999999999998877765 458999999999999998873 2348999998875 334689999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHHHHHH
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQICLQM 186 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~~ 186 (256)
+..+.+.+... ...+++.+.++|+|||++++...... ...++.+++
T Consensus 109 ~~~l~~~~~~~-------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 169 (203)
T 3h2b_A 109 WYSLIHMGPGE-------------------LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQAL 169 (203)
T ss_dssp ESSSTTCCTTT-------------------HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHH
T ss_pred hhhHhcCCHHH-------------------HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHH
Confidence 87766554322 57889999999999999999775443 367899999
Q ss_pred HHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 187 MEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 187 ~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
++.||+...+..... ..+-++....+
T Consensus 170 ~~~Gf~~~~~~~~~~-~p~~~l~~~~~ 195 (203)
T 3h2b_A 170 ETAGFQVTSSHWDPR-FPHAYLTAEAS 195 (203)
T ss_dssp HHTTEEEEEEEECTT-SSEEEEEEEEC
T ss_pred HHCCCcEEEEEecCC-Ccchhhhhhhh
Confidence 999999888776655 44444444333
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=141.76 Aligned_cols=139 Identities=16% Similarity=0.160 Sum_probs=104.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||+|||+|.+++.++.. ++.|+++|+|+.+++.|++|+..+++..++.++|+.+.+... .+.||+|+
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~------ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~-~~~fD~Ii 285 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK------GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGL-EGPFHHVL 285 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTC-CCCEEEEE
T ss_pred cCCCeEEEcccchhHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHh-cCCCCEEE
Confidence 35899999999999999988875 346999999999999999999999988778899998876543 34499999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC-HH----HHHHHHHHcCCcEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND-PS----QICLQMMEKGYAARI 195 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~----~~~~~~~~~g~~~~~ 195 (256)
+|||++....... . .....+..++..+.++|+|||++++++++... .. .+...+.+.|.....
T Consensus 286 ~dpP~f~~~~~~~-----~-------~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i 353 (393)
T 4dmg_A 286 LDPPTLVKRPEEL-----P-------AMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRV 353 (393)
T ss_dssp ECCCCCCSSGGGH-----H-------HHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEE
T ss_pred ECCCcCCCCHHHH-----H-------HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEE
Confidence 9999876443210 0 11234678899999999999999977765542 22 334445555665555
Q ss_pred EEe
Q 025207 196 VVQ 198 (256)
Q Consensus 196 ~~~ 198 (256)
+..
T Consensus 354 ~~~ 356 (393)
T 4dmg_A 354 HRV 356 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=128.79 Aligned_cols=142 Identities=17% Similarity=0.199 Sum_probs=110.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. +|..+|+|+|+++.+++.|++|+..+++.. ++..+|..+..++ ..+||+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~----~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~--~~~~D~ 87 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVER----GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE--TDQVSV 87 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc--CcCCCE
Confidence 46789999999999999999887 666789999999999999999999999864 8999999876543 126998
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|+.. |. |......++..+.+.|+++|++++ .+. .....+++++.+.||.......
T Consensus 88 Ivia----------------------G~-Gg~~i~~Il~~~~~~L~~~~~lVl-q~~-~~~~~vr~~L~~~Gf~i~~e~l 142 (225)
T 3kr9_A 88 ITIA----------------------GM-GGRLIARILEEGLGKLANVERLIL-QPN-NREDDLRIWLQDHGFQIVAESI 142 (225)
T ss_dssp EEEE----------------------EE-CHHHHHHHHHHTGGGCTTCCEEEE-EES-SCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEc----------------------CC-ChHHHHHHHHHHHHHhCCCCEEEE-ECC-CCHHHHHHHHHHCCCEEEEEEE
Confidence 8752 11 234578999999999999999888 343 5688999999999998765543
Q ss_pred cCCCCccEEEEEEEe
Q 025207 199 RSTEEENLHIIKFWR 213 (256)
Q Consensus 199 ~~~~~~~~~l~~~~~ 213 (256)
.......+.++...+
T Consensus 143 v~e~~~~Yeii~~~~ 157 (225)
T 3kr9_A 143 LEEAGKFYEILVVEA 157 (225)
T ss_dssp EEETTEEEEEEEEEE
T ss_pred EEECCEEEEEEEEEe
Confidence 333333444555444
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-17 Score=125.36 Aligned_cols=138 Identities=12% Similarity=0.080 Sum_probs=105.2
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d 103 (256)
..+...+++.+. ..++.+|||+|||+|.+++.++.. .++++++|+|+++.+++.|++++..++.. .-++.+|
T Consensus 11 ~~~~~~~~~~~~---~~~~~~vldiG~G~G~~~~~l~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d 83 (178)
T 3hm2_A 11 QHVRALAISALA---PKPHETLWDIGGGSGSIAIEWLRS----TPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQG 83 (178)
T ss_dssp HHHHHHHHHHHC---CCTTEEEEEESTTTTHHHHHHHTT----SSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECC
T ss_pred HHHHHHHHHHhc---ccCCCeEEEeCCCCCHHHHHHHHH----CCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecc
Confidence 334445555543 257789999999999998777765 56789999999999999999999988775 2267778
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
..+..+. ..++||+|+++.++.+ ..+++.+.++|+|||++++............
T Consensus 84 ~~~~~~~-~~~~~D~i~~~~~~~~-------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~ 137 (178)
T 3hm2_A 84 APRAFDD-VPDNPDVIFIGGGLTA-------------------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLW 137 (178)
T ss_dssp TTGGGGG-CCSCCSEEEECC-TTC-------------------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHH
T ss_pred hHhhhhc-cCCCCCEEEECCcccH-------------------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHH
Confidence 7654432 2378999999877542 3568899999999999999776666667788
Q ss_pred HHHHHcCCcEEE
Q 025207 184 LQMMEKGYAARI 195 (256)
Q Consensus 184 ~~~~~~g~~~~~ 195 (256)
..+.+.++....
T Consensus 138 ~~~~~~~~~~~~ 149 (178)
T 3hm2_A 138 ALRKQFGGTISS 149 (178)
T ss_dssp HHHHHHCCEEEE
T ss_pred HHHHHcCCeeEE
Confidence 888888876544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=133.75 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=93.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------------CCcceEEEcchhhc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------------NVHADLINTDIASG 107 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------------~~~~~~~~~d~~~~ 107 (256)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++.... ..+.+++++|+.+.
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 94 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL 94 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred CCCCEEEEeCCCCcHhHHHHHHC------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence 46789999999999998888876 459999999999999999875431 22348999998876
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------- 177 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------- 177 (256)
... ..++||+|++...+.+.+. .....+++++.++|||||++++++....
T Consensus 95 ~~~-~~~~fD~v~~~~~l~~l~~-------------------~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~ 154 (203)
T 1pjz_A 95 TAR-DIGHCAAFYDRAAMIALPA-------------------DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFS 154 (203)
T ss_dssp THH-HHHSEEEEEEESCGGGSCH-------------------HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCC
T ss_pred Ccc-cCCCEEEEEECcchhhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCC
Confidence 322 0168999998665543332 1256789999999999999555443321
Q ss_pred -CHHHHHHHHHHcCCcEEEEE
Q 025207 178 -DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 -~~~~~~~~~~~~g~~~~~~~ 197 (256)
..+++.+.+.. ||+...+.
T Consensus 155 ~~~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 155 VPQTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp CCHHHHHHTSCS-SEEEEEEE
T ss_pred CCHHHHHHHhcC-CcEEEEec
Confidence 24566666665 77654444
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=128.85 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=110.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|+|+|||+|.+++.+++. ++..+|+|+|+++.+++.|++|+..+++.. ++..+|+.+...+ ..+||+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~----~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~--~~~~D~ 93 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQM----GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE--ADNIDT 93 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHT----TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCE
T ss_pred CCCCEEEEECCchHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc--ccccCE
Confidence 46789999999999999998887 566689999999999999999999999864 8999999887543 237999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|+.. |. |-.....++....+.|+++|++++. + ......+++++.+.||.......
T Consensus 94 Ivia----------------------Gm-Gg~lI~~IL~~~~~~l~~~~~lIlq-p-~~~~~~lr~~L~~~Gf~i~~E~l 148 (230)
T 3lec_A 94 ITIC----------------------GM-GGRLIADILNNDIDKLQHVKTLVLQ-P-NNREDDLRKWLAANDFEIVAEDI 148 (230)
T ss_dssp EEEE----------------------EE-CHHHHHHHHHHTGGGGTTCCEEEEE-E-SSCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEe----------------------CC-chHHHHHHHHHHHHHhCcCCEEEEE-C-CCChHHHHHHHHHCCCEEEEEEE
Confidence 8641 11 2255788999999999999998884 4 34588999999999998766554
Q ss_pred cCCCCccEEEEEEEec
Q 025207 199 RSTEEENLHIIKFWRD 214 (256)
Q Consensus 199 ~~~~~~~~~l~~~~~~ 214 (256)
.......+.++...++
T Consensus 149 v~e~~~~Yeii~~~~~ 164 (230)
T 3lec_A 149 LTENDKRYEILVVKHG 164 (230)
T ss_dssp EEC--CEEEEEEEEEC
T ss_pred EEECCEEEEEEEEEeC
Confidence 4444444455555543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-16 Score=136.59 Aligned_cols=162 Identities=16% Similarity=0.102 Sum_probs=117.2
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEE
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~ 101 (256)
.+.++..++... + .++.+|||+|||+|.+++.++.. .+.++|+|+|+++.+++.|++|+..+++. .++++
T Consensus 203 ~~~la~~l~~~~--~--~~~~~vLD~gCGsG~~~i~~a~~----~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~ 274 (373)
T 3tm4_A 203 KASIANAMIELA--E--LDGGSVLDPMCGSGTILIELALR----RYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQ 274 (373)
T ss_dssp CHHHHHHHHHHH--T--CCSCCEEETTCTTCHHHHHHHHT----TCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEE
T ss_pred cHHHHHHHHHhh--c--CCCCEEEEccCcCcHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE
Confidence 566666666554 2 47889999999999999998886 44458999999999999999999999983 49999
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
+|+.+... .+++||+|++||||....... ..-...+..+++.+.++| +|.++++++ ....
T Consensus 275 ~D~~~~~~--~~~~fD~Ii~npPyg~r~~~~-------------~~~~~ly~~~~~~l~r~l--~g~~~~i~~---~~~~ 334 (373)
T 3tm4_A 275 GDATQLSQ--YVDSVDFAISNLPYGLKIGKK-------------SMIPDLYMKFFNELAKVL--EKRGVFITT---EKKA 334 (373)
T ss_dssp CCGGGGGG--TCSCEEEEEEECCCC-------------------CCHHHHHHHHHHHHHHHE--EEEEEEEES---CHHH
T ss_pred CChhhCCc--ccCCcCEEEECCCCCcccCcc-------------hhHHHHHHHHHHHHHHHc--CCeEEEEEC---CHHH
Confidence 99988642 347899999999997533211 011234578888999988 566666554 4567
Q ss_pred HHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 182 ICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
+.+.+.+.||+.........+.-...++....
T Consensus 335 ~~~~~~~~G~~~~~~~~~~nG~l~~~~~~~~~ 366 (373)
T 3tm4_A 335 IEEAIAENGFEIIHHRVIGHGGLMVHLYVVKL 366 (373)
T ss_dssp HHHHHHHTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEEEEcCCEEEEEEeccC
Confidence 77888889998776665555554555554433
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=137.83 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=114.4
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhccc-CCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQE-VPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~-~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
..|+|+....++... ++.+. ...++.+|||+|||+|.+++.+++.+... ..+..++|+|+++.+++.|+.|+..++
T Consensus 107 ~~~TP~~i~~~~~~l-l~~l~--~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g 183 (344)
T 2f8l_A 107 HQMTPDSIGFIVAYL-LEKVI--QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR 183 (344)
T ss_dssp GCCCCHHHHHHHHHH-HHHHH--TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cCCChHHHHHHHHHH-HHHhc--CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC
Confidence 357776444443333 33221 12367899999999999999998876421 112689999999999999999999888
Q ss_pred CcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhc-CCCCcH-HHHHHHHHHHhhccccCeEEEEE
Q 025207 95 VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWA-GGENGR-AVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 95 ~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+...++++|..... ..++||+|++||||...+..+.. ..+. +...+. .....++..+.+.|+|||+++++
T Consensus 184 ~~~~i~~~D~l~~~---~~~~fD~Ii~NPPfg~~~~~~~~-----~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v 255 (344)
T 2f8l_A 184 QKMTLLHQDGLANL---LVDPVDVVISDLPVGYYPDDENA-----KTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL 255 (344)
T ss_dssp CCCEEEESCTTSCC---CCCCEEEEEEECCCSEESCHHHH-----TTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceEEECCCCCcc---ccCCccEEEECCCCCCcCchhhh-----hhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence 86689999987643 24789999999998654332211 0111 111111 12346889999999999999998
Q ss_pred EeC----CCCHHHHHHHHHHcCCcE
Q 025207 173 TLT----ANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 173 ~~~----~~~~~~~~~~~~~~g~~~ 193 (256)
.+. ......+++++.+.++..
T Consensus 256 ~p~~~~~~~~~~~ir~~l~~~~~~~ 280 (344)
T 2f8l_A 256 VPDAMFGTSDFAKVDKFIKKNGHIE 280 (344)
T ss_dssp EEGGGGGSTTHHHHHHHHHHHEEEE
T ss_pred ECchhcCCchHHHHHHHHHhCCeEE
Confidence 852 344678888888877643
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=138.64 Aligned_cols=141 Identities=23% Similarity=0.354 Sum_probs=105.1
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+...|++|.+.. .....+.+++.+. ..++.+|||+|||+|.+++.+++. +|+++|+++|+++.+++.+++++
T Consensus 169 ~~~~~gvf~~~~-~d~~~~~ll~~l~---~~~~~~VLDlGcG~G~~~~~la~~----~~~~~v~~vD~s~~~l~~a~~~~ 240 (343)
T 2pjd_A 169 VKTLPGVFSRDG-LDVGSQLLLSTLT---PHTKGKVLDVGCGAGVLSVAFARH----SPKIRLTLCDVSAPAVEASRATL 240 (343)
T ss_dssp EEECTTCTTSSS-CCHHHHHHHHHSC---TTCCSBCCBTTCTTSHHHHHHHHH----CTTCBCEEEESBHHHHHHHHHHH
T ss_pred EEecCCccCCCC-CcHHHHHHHHhcC---cCCCCeEEEecCccCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHH
Confidence 344566665432 1223344444442 135679999999999999888887 67779999999999999999999
Q ss_pred HHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 91 EAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 91 ~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
..+++..+++.+|+.+.. +++||+|++||||+.... ........++..+.++|||||+++
T Consensus 241 ~~~~~~~~~~~~d~~~~~----~~~fD~Iv~~~~~~~g~~----------------~~~~~~~~~l~~~~~~LkpgG~l~ 300 (343)
T 2pjd_A 241 AANGVEGEVFASNVFSEV----KGRFDMIISNPPFHDGMQ----------------TSLDAAQTLIRGAVRHLNSGGELR 300 (343)
T ss_dssp HHTTCCCEEEECSTTTTC----CSCEEEEEECCCCCSSSH----------------HHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred HHhCCCCEEEEccccccc----cCCeeEEEECCCcccCcc----------------CCHHHHHHHHHHHHHhCCCCcEEE
Confidence 998887788889987642 468999999999863211 012336788999999999999999
Q ss_pred EEEeCCCCH
Q 025207 171 LVTLTANDP 179 (256)
Q Consensus 171 ~~~~~~~~~ 179 (256)
++.+.....
T Consensus 301 i~~~~~~~~ 309 (343)
T 2pjd_A 301 IVANAFLPY 309 (343)
T ss_dssp EEEETTSSH
T ss_pred EEEcCCCCc
Confidence 987755443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=129.77 Aligned_cols=118 Identities=12% Similarity=0.164 Sum_probs=92.8
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
.+.+...+.. ..++.+|||+|||+|.++..++.. .|+.+++|+|+++.+++.|++++...+ ...++.+|+.+.
T Consensus 32 ~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~ 104 (234)
T 3dtn_A 32 YGVSVSIASV--DTENPDILDLGAGTGLLSAFLMEK----YPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKY 104 (234)
T ss_dssp HHHHHHTCCC--SCSSCEEEEETCTTSHHHHHHHHH----CTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTC
T ss_pred HHHHHHHhhc--CCCCCeEEEecCCCCHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhcc
Confidence 3445554432 257799999999999999888887 677899999999999999999876555 458999998876
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
..+ ++||+|+++.++.+.++. ....+++++.++|||||++++...
T Consensus 105 ~~~---~~fD~v~~~~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 105 DFE---EKYDMVVSALSIHHLEDE-------------------DKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp CCC---SCEEEEEEESCGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCC---CCceEEEEeCccccCCHH-------------------HHHHHHHHHHHhcCCCcEEEEEEe
Confidence 332 789999998776554332 134689999999999999999764
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-17 Score=136.48 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=117.5
Q ss_pred eeccCC--ccccCCchHHHHHHHHHhhc------------ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEE
Q 025207 11 VSSHPE--VYEPCDDSFALVDALLADRI------------NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT 76 (256)
Q Consensus 11 ~~~~~~--~~~p~~~~~~l~~~l~~~~~------------~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~gi 76 (256)
+.+.++ ++.+++.++.+.+.+..... .+...++.+|||+|||+|.+++.++..+ +|+.+++++
T Consensus 67 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~---~~~~~v~~v 143 (277)
T 1o54_A 67 IRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAV---GSSGKVFAY 143 (277)
T ss_dssp EECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHT---TTTCEEEEE
T ss_pred EEEcCCcEEEEeCCCHHHHHhhccccCCccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHh---CCCcEEEEE
Confidence 344444 67888887776653322110 1122567899999999999998888764 356799999
Q ss_pred eCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHH
Q 025207 77 DINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDK 154 (256)
Q Consensus 77 D~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
|+++.+++.|++++..+++. .+++.+|+.+.. .+++||+|++++|. ...
T Consensus 144 D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~V~~~~~~--------------------------~~~ 194 (277)
T 1o54_A 144 EKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---DEKDVDALFLDVPD--------------------------PWN 194 (277)
T ss_dssp CCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---SCCSEEEEEECCSC--------------------------GGG
T ss_pred ECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc---cCCccCEEEECCcC--------------------------HHH
Confidence 99999999999999988873 388999987763 24689999999874 236
Q ss_pred HHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 155 ILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 155 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++..+.++|+|||++++..+......++.+.+.+.||....+..
T Consensus 195 ~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 195 YIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp THHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEE
Confidence 68888999999999999887655566778888888887665554
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=131.34 Aligned_cols=144 Identities=13% Similarity=0.045 Sum_probs=110.8
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ce
Q 025207 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--AD 98 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~ 98 (256)
++.+...++.++..+. ..++.+|||+|||+|.++..++... +++++|+|+++.+++.|++++...++. .+
T Consensus 18 ~~~~~~~~~~l~~~~~---~~~~~~VLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~ 89 (256)
T 1nkv_A 18 NPFTEEKYATLGRVLR---MKPGTRILDLGSGSGEMLCTWARDH-----GITGTGIDMSSLFTAQAKRRAEELGVSERVH 89 (256)
T ss_dssp SSCCHHHHHHHHHHTC---CCTTCEEEEETCTTCHHHHHHHHHT-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred CCCCHHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcCCCcceE
Confidence 3345666777777653 2578899999999999998888763 458999999999999999999988875 48
Q ss_pred EEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--
Q 025207 99 LINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-- 176 (256)
Q Consensus 99 ~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-- 176 (256)
++.+|+.+... +++||+|++...+.+.++ ...+++++.++|||||++++..+..
T Consensus 90 ~~~~d~~~~~~---~~~fD~V~~~~~~~~~~~---------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~ 145 (256)
T 1nkv_A 90 FIHNDAAGYVA---NEKCDVAACVGATWIAGG---------------------FAGAEELLAQSLKPGGIMLIGEPYWRQ 145 (256)
T ss_dssp EEESCCTTCCC---SSCEEEEEEESCGGGTSS---------------------SHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred EEECChHhCCc---CCCCCEEEECCChHhcCC---------------------HHHHHHHHHHHcCCCeEEEEecCcccC
Confidence 99999887532 578999999655443322 3678999999999999999976422
Q ss_pred -------------------CCHHHHHHHHHHcCCcEEEE
Q 025207 177 -------------------NDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 177 -------------------~~~~~~~~~~~~~g~~~~~~ 196 (256)
....++.+.+.+.||....+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 146 LPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp CCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred CCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence 12357788888889876543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=124.39 Aligned_cols=141 Identities=22% Similarity=0.289 Sum_probs=111.0
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cc
Q 025207 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HA 97 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~ 97 (256)
|++....+.+.+++.+. ..++.+|||+|||+|.++..++.. . .+++++|+++.+++.+++++..++. ..
T Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~~~vldiG~G~G~~~~~l~~~----~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~ 84 (192)
T 1l3i_A 14 PGPTAMEVRCLIMCLAE---PGKNDVAVDVGCGTGGVTLELAGR----V--RRVYAIDRNPEAISTTEMNLQRHGLGDNV 84 (192)
T ss_dssp CCCCCHHHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHTT----S--SEEEEEESCHHHHHHHHHHHHHTTCCTTE
T ss_pred CCCChHHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHh----c--CEEEEEECCHHHHHHHHHHHHHcCCCcce
Confidence 33445667777777654 257889999999999998877765 2 5999999999999999999998887 33
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.+..+|+.+..+. .++||+|+++.++.+ ...+++.+.++|+|||++++..+...
T Consensus 85 ~~~~~d~~~~~~~--~~~~D~v~~~~~~~~------------------------~~~~l~~~~~~l~~gG~l~~~~~~~~ 138 (192)
T 1l3i_A 85 TLMEGDAPEALCK--IPDIDIAVVGGSGGE------------------------LQEILRIIKDKLKPGGRIIVTAILLE 138 (192)
T ss_dssp EEEESCHHHHHTT--SCCEEEEEESCCTTC------------------------HHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred EEEecCHHHhccc--CCCCCEEEECCchHH------------------------HHHHHHHHHHhcCCCcEEEEEecCcc
Confidence 8889998774332 158999999876521 46889999999999999999877666
Q ss_pred CHHHHHHHHHHcCCcEEE
Q 025207 178 DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~ 195 (256)
...++...+.+.||....
T Consensus 139 ~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 139 TKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp HHHHHHHHHHHTTCCCEE
T ss_pred hHHHHHHHHHHCCCceEE
Confidence 667888899999986543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=135.94 Aligned_cols=152 Identities=12% Similarity=0.066 Sum_probs=107.1
Q ss_pred chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceE
Q 025207 23 DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADL 99 (256)
Q Consensus 23 ~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~ 99 (256)
+.....+++.+.+.. ..++.+|||+|||+|.+++.++.. +++|+++|+|+.+++.|++|+..+++. .++
T Consensus 136 dq~~~~~~l~~~~~~--~~~~~~VLDlgcGtG~~sl~la~~------ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~ 207 (332)
T 2igt_A 136 EQIVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRW 207 (332)
T ss_dssp GGHHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEE
T ss_pred HHHHHHHHHHHHHHh--cCCCCcEEEcccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEE
Confidence 455555556555421 146789999999999999988874 349999999999999999999999875 489
Q ss_pred EEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 100 INTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 100 ~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++|+.+..... ..++||+|++|||++........ ......+..++..+.++|+|||++++......
T Consensus 208 i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~-----------~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~ 276 (332)
T 2igt_A 208 ICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEV-----------WQLFDHLPLMLDICREILSPKALGLVLTAYSI 276 (332)
T ss_dssp ECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCE-----------EEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred EECcHHHHHHHHHhcCCCceEEEECCccccCCchHHH-----------HHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence 999998875432 14689999999997643321100 01123467889999999999999777554332
Q ss_pred --CHHHHHHHHH----HcCCcE
Q 025207 178 --DPSQICLQMM----EKGYAA 193 (256)
Q Consensus 178 --~~~~~~~~~~----~~g~~~ 193 (256)
....+...+. +.|+..
T Consensus 277 ~~~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 277 RASFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp TSCHHHHHHHHHHHTTTSCSEE
T ss_pred CCCHHHHHHHHHHHHHHcCCeE
Confidence 2334444444 456554
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.1e-17 Score=128.71 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=92.9
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-c
Q 025207 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-A 97 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~ 97 (256)
.+++.+..+.+.+++.+... .++.+|||+|||+|.+++.++.. + ..+|+|+|+++.+++.|++|+..+++. .
T Consensus 33 ~~rp~~~~~~~~l~~~l~~~--~~~~~vLDlgcG~G~~~~~l~~~----~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v 105 (202)
T 2fpo_A 33 GLRPTTDRVRETLFNWLAPV--IVDAQCLDCFAGSGALGLEALSR----Y-AAGATLIEMDRAVSQQLIKNLATLKAGNA 105 (202)
T ss_dssp -----CHHHHHHHHHHHHHH--HTTCEEEETTCTTCHHHHHHHHT----T-CSEEEEECSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCCCCHHHHHHHHHHHHHhh--cCCCeEEEeCCCcCHHHHHHHhc----C-CCEEEEEECCHHHHHHHHHHHHHcCCCcE
Confidence 34445566666666655321 25789999999999998876654 2 238999999999999999999998874 4
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh--ccccCeEEEEEEeC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK--LLSKRGWLYLVTLT 175 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~ 175 (256)
+++++|+.+..+. ..++||+|+++|||.. .. ...+++.+.+ +|+|||++++....
T Consensus 106 ~~~~~D~~~~~~~-~~~~fD~V~~~~p~~~-~~---------------------~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 106 RVVNSNAMSFLAQ-KGTPHNIVFVDPPFRR-GL---------------------LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp EEECSCHHHHHSS-CCCCEEEEEECCSSST-TT---------------------HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred EEEECCHHHHHhh-cCCCCCEEEECCCCCC-Cc---------------------HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 8999998875432 3568999999999752 11 3455666644 69999999997764
Q ss_pred C
Q 025207 176 A 176 (256)
Q Consensus 176 ~ 176 (256)
.
T Consensus 163 ~ 163 (202)
T 2fpo_A 163 E 163 (202)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-16 Score=121.17 Aligned_cols=136 Identities=21% Similarity=0.254 Sum_probs=109.1
Q ss_pred chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEE
Q 025207 23 DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLIN 101 (256)
Q Consensus 23 ~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~ 101 (256)
....+.+.+++.+. ..++.+|||+|||+|.++..++. ++.+++|+|+++.+++.+++++..+++.. +++.
T Consensus 19 ~~~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 89 (183)
T 2yxd_A 19 TKEEIRAVSIGKLN---LNKDDVVVDVGCGSGGMTVEIAK------RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIK 89 (183)
T ss_dssp CCHHHHHHHHHHHC---CCTTCEEEEESCCCSHHHHHHHT------TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CHHHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 35677777777664 24778999999999998877665 35699999999999999999999888754 8999
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025207 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
+|+.+..+ +++||+|+++++ .. ...++..+.++ |||++++..+......+
T Consensus 90 ~d~~~~~~---~~~~D~i~~~~~----~~---------------------~~~~l~~~~~~--~gG~l~~~~~~~~~~~~ 139 (183)
T 2yxd_A 90 GRAEDVLD---KLEFNKAFIGGT----KN---------------------IEKIIEILDKK--KINHIVANTIVLENAAK 139 (183)
T ss_dssp SCHHHHGG---GCCCSEEEECSC----SC---------------------HHHHHHHHHHT--TCCEEEEEESCHHHHHH
T ss_pred CCcccccc---CCCCcEEEECCc----cc---------------------HHHHHHHHhhC--CCCEEEEEecccccHHH
Confidence 99987433 368999999877 11 56778888887 99999998876666778
Q ss_pred HHHHHHHcCCcEEEEE
Q 025207 182 ICLQMMEKGYAARIVV 197 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~ 197 (256)
+.+.+++.|+....+.
T Consensus 140 ~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 140 IINEFESRGYNVDAVN 155 (183)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCeEEEEE
Confidence 8999999998776554
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=131.51 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=110.4
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEE
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~ 101 (256)
.......++..+.. ..++.+|||+|||+|.++..++.. ++++|+|+|+++.+++.|++++...++. .+++.
T Consensus 30 ~~~~~~~~l~~l~~--~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 102 (267)
T 3kkz_A 30 SPEVTLKALSFIDN--LTEKSLIADIGCGTGGQTMVLAGH-----VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIV 102 (267)
T ss_dssp CHHHHHHHHTTCCC--CCTTCEEEEETCTTCHHHHHHHTT-----CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CHHHHHHHHHhccc--CCCCCEEEEeCCCCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEE
Confidence 45555666666542 257899999999999998777664 4669999999999999999999988875 48999
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----
Q 025207 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----- 176 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----- 176 (256)
+|+.+.. +.+++||+|+++.++.+. + ...+++.+.++|||||++++..+..
T Consensus 103 ~d~~~~~--~~~~~fD~i~~~~~~~~~-~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 158 (267)
T 3kkz_A 103 GSMDDLP--FRNEELDLIWSEGAIYNI-G---------------------FERGLNEWRKYLKKGGYLAVSECSWFTDER 158 (267)
T ss_dssp CCTTSCC--CCTTCEEEEEESSCGGGT-C---------------------HHHHHHHHGGGEEEEEEEEEEEEEESSSCC
T ss_pred cChhhCC--CCCCCEEEEEEcCCceec-C---------------------HHHHHHHHHHHcCCCCEEEEEEeeecCCCC
Confidence 9997752 335789999998776543 1 4688999999999999999976531
Q ss_pred ---------------CCHHHHHHHHHHcCCcEEEEEe
Q 025207 177 ---------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 ---------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....++.+.+++.||....+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 159 PAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp CHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1234667778888887665543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-17 Score=133.35 Aligned_cols=133 Identities=22% Similarity=0.270 Sum_probs=96.6
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CCc------
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NVH------ 96 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~~------ 96 (256)
.+++.+++.+. ..++.+|||+|||+|.+++.++..+. .++.+|+|+|+++.+++.|++++..+ ++.
T Consensus 38 ~l~~~~l~~~~---~~~~~~vLD~gcGsG~~~~~la~~~~--~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~ 112 (250)
T 1o9g_A 38 EIFQRALARLP---GDGPVTLWDPCCGSGYLLTVLGLLHR--RSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELER 112 (250)
T ss_dssp HHHHHHHHTSS---CCSCEEEEETTCTTSHHHHHHHHHTG--GGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhcc---cCCCCeEEECCCCCCHHHHHHHHHhc--cCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhh
Confidence 45555555432 23678999999999999998887631 23568999999999999999988765 431
Q ss_pred ---------------------ce-------------EEEcchhhchhh--h-cCCCccEEEECCCCCCCCCcccccccch
Q 025207 97 ---------------------AD-------------LINTDIASGLEK--R-LAGLVDVMVVNPPYVPTPEDEVGREGIA 139 (256)
Q Consensus 97 ---------------------~~-------------~~~~d~~~~~~~--~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~ 139 (256)
.+ ++++|+.+.... . ...+||+|++||||........
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~------ 186 (250)
T 1o9g_A 113 REQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG------ 186 (250)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS------
T ss_pred hhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccc------
Confidence 23 899998775421 0 2348999999999975443210
Q ss_pred hhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 140 SAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
..+......+++.+.++|+|||+++++...
T Consensus 187 ------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 187 ------QVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp ------CCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred ------cccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 123456789999999999999999995443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-16 Score=128.35 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=111.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. ++..+|+|+|+++.+++.|++|+..+++.. ++..+|+.+...+ ..+||+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~----~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~--~~~~D~ 93 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKN----QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK--KDAIDT 93 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCE
T ss_pred CCCCEEEEECCccHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc--cccccE
Confidence 46789999999999999998887 566689999999999999999999999864 8999999887543 235999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|++. |. |......++....+.|+++|++++. + ......+++++.+.||.......
T Consensus 94 Ivia----------------------gm-Gg~lI~~IL~~~~~~L~~~~~lIlq-~-~~~~~~lr~~L~~~Gf~i~~E~l 148 (244)
T 3gnl_A 94 IVIA----------------------GM-GGTLIRTILEEGAAKLAGVTKLILQ-P-NIAAWQLREWSEQNNWLITSEAI 148 (244)
T ss_dssp EEEE----------------------EE-CHHHHHHHHHHTGGGGTTCCEEEEE-E-SSCHHHHHHHHHHHTEEEEEEEE
T ss_pred EEEe----------------------CC-chHHHHHHHHHHHHHhCCCCEEEEE-c-CCChHHHHHHHHHCCCEEEEEEE
Confidence 8751 01 2356788999999999999999984 3 34688999999999998755443
Q ss_pred cCCCCccEEEEEEEec
Q 025207 199 RSTEEENLHIIKFWRD 214 (256)
Q Consensus 199 ~~~~~~~~~l~~~~~~ 214 (256)
.......+.++...++
T Consensus 149 v~e~~k~Yeii~~~~~ 164 (244)
T 3gnl_A 149 LREDNKVYEIMVLAPS 164 (244)
T ss_dssp EEETTEEEEEEEEEEC
T ss_pred EEECCEEEEEEEEEeC
Confidence 3333444455555554
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=129.24 Aligned_cols=124 Identities=11% Similarity=0.077 Sum_probs=94.4
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----
Q 025207 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH----- 96 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~----- 96 (256)
+......+++.+.+.. .++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.|++++..+++.
T Consensus 12 ~~~~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~ 84 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQ---SNARRVIDLGCGQGNLLKILLKD----SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWE 84 (217)
T ss_dssp CHHHHHHHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHHC----TTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHT
T ss_pred CHHHHHHHHHHHHHHh---cCCCEEEEeCCCCCHHHHHHHhh----CCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCc
Confidence 3355556666666542 47789999999999998887775 56679999999999999999998877653
Q ss_pred -ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 97 -ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 97 -~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+++.+|+... +...++||+|+++..+.+.+.. ....+++.+.++|||||+++++.
T Consensus 85 ~v~~~~~d~~~~--~~~~~~fD~v~~~~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 85 RLQLIQGALTYQ--DKRFHGYDAATVIEVIEHLDLS-------------------RLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp TEEEEECCTTSC--CGGGCSCSEEEEESCGGGCCHH-------------------HHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ceEEEeCCcccc--cccCCCcCEEeeHHHHHcCCHH-------------------HHHHHHHHHHHHcCCCEEEEEcc
Confidence 48899998543 2234789999997665544321 25788999999999999777644
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=132.33 Aligned_cols=121 Identities=20% Similarity=0.194 Sum_probs=95.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.+++.+++. .++++|+|+|+++.+++.|++|+..+++.+ .++++|+.+. +. .++||+|
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~----~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--~~~~D~V 190 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKY----SKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--KDVADRV 190 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH----TCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--TTCEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--cCCceEE
Confidence 47789999999999999999887 446699999999999999999999999865 8999999887 32 5689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----CCHHHHHHHHHHc-CCcE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-----NDPSQICLQMMEK-GYAA 193 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----~~~~~~~~~~~~~-g~~~ 193 (256)
+++||+. ...++..+.+.|+|||++++++... ....+..+.+.+. ++..
T Consensus 191 i~d~p~~-------------------------~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (272)
T 3a27_A 191 IMGYVHK-------------------------THKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKL 245 (272)
T ss_dssp EECCCSS-------------------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEE
T ss_pred EECCccc-------------------------HHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCee
Confidence 9999961 3456888889999999999876544 2233444555543 4443
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-17 Score=142.01 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=103.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----C----CcceEEEcchhhchh--
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----N----VHADLINTDIASGLE-- 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----~----~~~~~~~~d~~~~~~-- 109 (256)
.++.+|||+|||+|.++..+++.. .++++|+|+|+++.+++.|++++..+ | ...+++.+|+.+...
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~ 158 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLV---GEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE 158 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHH---TTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred CCCCEEEEecCccCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence 478999999999999998888874 25679999999999999999998765 4 234899999887521
Q ss_pred --hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------
Q 025207 110 --KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------- 177 (256)
Q Consensus 110 --~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------- 177 (256)
++.+++||+|+++..+.+.++ ...+++++.++|||||++++......
T Consensus 159 ~~~~~~~~fD~V~~~~~l~~~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 217 (383)
T 4fsd_A 159 PEGVPDSSVDIVISNCVCNLSTN---------------------KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQD 217 (383)
T ss_dssp SCCCCTTCEEEEEEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHC
T ss_pred cCCCCCCCEEEEEEccchhcCCC---------------------HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhh
Confidence 334679999999877654432 46889999999999999999764321
Q ss_pred ------------CHHHHHHHHHHcCCcEEE
Q 025207 178 ------------DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 178 ------------~~~~~~~~~~~~g~~~~~ 195 (256)
...++.+++.+.||....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 247 (383)
T 4fsd_A 218 PILYGECLGGALYLEDFRRLVAEAGFRDVR 247 (383)
T ss_dssp HHHHHTTCTTCCBHHHHHHHHHHTTCCCEE
T ss_pred HHHhhcccccCCCHHHHHHHHHHCCCceEE
Confidence 236888999999997653
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-16 Score=129.17 Aligned_cols=140 Identities=11% Similarity=0.157 Sum_probs=106.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+.+.+...+..+ .++.+|||+|||+|.++..++.. +++|+|+|+++.+++.++++ .+++.+|
T Consensus 25 ~~~~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~-------~~~~~~d 89 (240)
T 3dli_A 25 RELVKARLRRYIPYF--KGCRRVLDIGCGRGEFLELCKEE------GIESIGVDINEDMIKFCEGK-------FNVVKSD 89 (240)
T ss_dssp HHHHHHHHGGGGGGT--TTCSCEEEETCTTTHHHHHHHHH------TCCEEEECSCHHHHHHHHTT-------SEEECSC
T ss_pred HHHHHHHHHHHHhhh--cCCCeEEEEeCCCCHHHHHHHhC------CCcEEEEECCHHHHHHHHhh-------cceeecc
Confidence 445555555554432 46799999999999998877775 45899999999999998876 4788899
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------ 177 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------ 177 (256)
+.+...++.+++||+|+++-.+.+.+.+. +..+++++.++|||||++++..+...
T Consensus 90 ~~~~~~~~~~~~fD~i~~~~~l~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 150 (240)
T 3dli_A 90 AIEYLKSLPDKYLDGVMISHFVEHLDPER-------------------LFELLSLCYSKMKYSSYIVIESPNPTSLYSLI 150 (240)
T ss_dssp HHHHHHTSCTTCBSEEEEESCGGGSCGGG-------------------HHHHHHHHHHHBCTTCCEEEEEECTTSHHHHH
T ss_pred HHHHhhhcCCCCeeEEEECCchhhCCcHH-------------------HHHHHHHHHHHcCCCcEEEEEeCCcchhHHHH
Confidence 88865555568999999976655443221 57889999999999999999876543
Q ss_pred ------------CHHHHHHHHHHcCCcEEEEE
Q 025207 178 ------------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 ------------~~~~~~~~~~~~g~~~~~~~ 197 (256)
...++..++.+.||+...+.
T Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 151 NFYIDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp HHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 23577888888898865443
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-16 Score=123.50 Aligned_cols=124 Identities=18% Similarity=0.212 Sum_probs=100.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++++ ...+..+|+.+.. .+++||+|+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~---~~~~fD~v~ 107 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA------GFDVDATDGSPELAAEASRRL-----GRPVRTMLFHQLD---AIDAYDAVW 107 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCC---CCSCEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHc------CCeEEEECCCHHHHHHHHHhc-----CCceEEeeeccCC---CCCcEEEEE
Confidence 36789999999999998877765 458999999999999999886 3367888887754 468999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------CHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------DPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~~ 186 (256)
++..+.+.+. .....+++.+.++|||||++++..+... ..+++.+.+
T Consensus 108 ~~~~l~~~~~-------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (211)
T 3e23_A 108 AHACLLHVPR-------------------DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARY 168 (211)
T ss_dssp ECSCGGGSCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHH
T ss_pred ecCchhhcCH-------------------HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHH
Confidence 9876654432 1267889999999999999999866432 567899999
Q ss_pred HHcC-CcEEEEE
Q 025207 187 MEKG-YAARIVV 197 (256)
Q Consensus 187 ~~~g-~~~~~~~ 197 (256)
++.| |+...+.
T Consensus 169 ~~aG~f~~~~~~ 180 (211)
T 3e23_A 169 AEAGTWASVAVE 180 (211)
T ss_dssp HHHCCCSEEEEE
T ss_pred HhCCCcEEEEEE
Confidence 9999 9986655
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-16 Score=130.21 Aligned_cols=146 Identities=12% Similarity=0.140 Sum_probs=109.9
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+++....|.|+..++. ..+.+.+ +++.+|||+|||+|.+++.+++. ..++|+++|+||.+++.+++|+
T Consensus 101 ~D~~k~~f~~~~~~er--~ri~~~~-----~~g~~VlD~~aG~G~~~i~~a~~-----g~~~V~avD~np~a~~~~~~N~ 168 (278)
T 3k6r_A 101 LDVAKIMFSPANVKER--VRMAKVA-----KPDELVVDMFAGIGHLSLPIAVY-----GKAKVIAIEKDPYTFKFLVENI 168 (278)
T ss_dssp EETTTSCCCGGGHHHH--HHHHHHC-----CTTCEEEETTCTTTTTTHHHHHH-----TCCEEEEECCCHHHHHHHHHHH
T ss_pred EeccceEEcCCcHHHH--HHHHHhc-----CCCCEEEEecCcCcHHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHH
Confidence 4566666777655444 3455543 57999999999999999998876 2358999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
+.|++.. .++++|..+... .+.||.|+.|||+. ...++..+.++||+||+
T Consensus 169 ~~N~v~~~v~~~~~D~~~~~~---~~~~D~Vi~~~p~~-------------------------~~~~l~~a~~~lk~gG~ 220 (278)
T 3k6r_A 169 HLNKVEDRMSAYNMDNRDFPG---ENIADRILMGYVVR-------------------------THEFIPKALSIAKDGAI 220 (278)
T ss_dssp HHTTCTTTEEEECSCTTTCCC---CSCEEEEEECCCSS-------------------------GGGGHHHHHHHEEEEEE
T ss_pred HHcCCCCcEEEEeCcHHHhcc---ccCCCEEEECCCCc-------------------------HHHHHHHHHHHcCCCCE
Confidence 9999875 889999887643 37899999999864 13456677789999999
Q ss_pred EEEEEeC------CCCHHHHHHHHHHcCCcEEEE
Q 025207 169 LYLVTLT------ANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 169 l~~~~~~------~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+.+.... ....+.+.+.....|+....+
T Consensus 221 ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 221 IHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp EEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeeecccccchhHHHHHHHHHHHcCCcEEEE
Confidence 8763321 122345677778888876543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=127.13 Aligned_cols=143 Identities=14% Similarity=0.177 Sum_probs=109.3
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~ 102 (256)
..+++.+++.+. .++.+|||+|||+|.++..+++. ++.+++|+|+++.+++.|++++...++. .+++.+
T Consensus 30 ~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~-----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~ 100 (219)
T 3dlc_A 30 PIIAENIINRFG----ITAGTCIDIGSGPGALSIALAKQ-----SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQG 100 (219)
T ss_dssp HHHHHHHHHHHC----CCEEEEEEETCTTSHHHHHHHHH-----SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHHHHHHhcC----CCCCEEEEECCCCCHHHHHHHHc-----CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEc
Confidence 445555555543 23349999999999998887775 4579999999999999999999988875 389999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----
Q 025207 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----- 177 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----- 177 (256)
|+.+.. +.+++||+|+++..+.+.++ ...+++.+.++|+|||++++......
T Consensus 101 d~~~~~--~~~~~~D~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~ 157 (219)
T 3dlc_A 101 DVHNIP--IEDNYADLIVSRGSVFFWED---------------------VATAFREIYRILKSGGKTYIGGGFGNKELRD 157 (219)
T ss_dssp BTTBCS--SCTTCEEEEEEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEECCSSHHHHH
T ss_pred CHHHCC--CCcccccEEEECchHhhccC---------------------HHHHHHHHHHhCCCCCEEEEEeccCcHHHHH
Confidence 987752 34578999999877654422 56889999999999999999642211
Q ss_pred ------------------------CHHHHHHHHHHcCCcEEEEEec
Q 025207 178 ------------------------DPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 178 ------------------------~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
..+++.+.+++.||+...+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 203 (219)
T 3dlc_A 158 SISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILG 203 (219)
T ss_dssp HHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEec
Confidence 1256788889999987666544
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=131.64 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=105.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++..+ +|+.+++++|+++.+++.|++++..+++.. +++.+|+.+.. .+++||+
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~ 165 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIV---GPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI---EEENVDH 165 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC---CCCSEEE
T ss_pred CCCCEEEEecCCchHHHHHHHHHh---CCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc---CCCCcCE
Confidence 578999999999999998888765 356799999999999999999999988754 89999988653 3478999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC--CcEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG--YAARIV 196 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g--~~~~~~ 196 (256)
|++++|. ...+++.+.++|+|||++++..+......++.+.+.+.| |....+
T Consensus 166 v~~~~~~--------------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 166 VILDLPQ--------------------------PERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp EEECSSC--------------------------GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEE
T ss_pred EEECCCC--------------------------HHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEE
Confidence 9998873 235688999999999999998776666778889999998 876555
Q ss_pred Eec
Q 025207 197 VQR 199 (256)
Q Consensus 197 ~~~ 199 (256)
...
T Consensus 220 ~e~ 222 (255)
T 3mb5_A 220 INV 222 (255)
T ss_dssp ECC
T ss_pred EEE
Confidence 443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-16 Score=130.91 Aligned_cols=130 Identities=22% Similarity=0.230 Sum_probs=104.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. .|+.+++|+|+++.+++.+++++..++... .++.+|+.+.. +.+++||+|
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v 109 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKN----NPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP--FEDSSFDHI 109 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHH----CTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC--SCTTCEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC--CCCCCeeEE
Confidence 57899999999999998888877 677899999999999999999999888754 89999988753 345899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------------------
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------------- 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------- 177 (256)
+++..+.+.++ ...++..+.++|||||++++..+...
T Consensus 110 ~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (276)
T 3mgg_A 110 FVCFVLEHLQS---------------------PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQ 168 (276)
T ss_dssp EEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHH
T ss_pred EEechhhhcCC---------------------HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHH
Confidence 99876654433 45889999999999999999764221
Q ss_pred --------CHHHHHHHHHHcCCcEEEEE
Q 025207 178 --------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 --------~~~~~~~~~~~~g~~~~~~~ 197 (256)
...++..++++.||....+.
T Consensus 169 ~~~~~~~~~~~~l~~~l~~aGf~~v~~~ 196 (276)
T 3mgg_A 169 AYMKGNSLVGRQIYPLLQESGFEKIRVE 196 (276)
T ss_dssp HHTTCCTTGGGGHHHHHHHTTCEEEEEE
T ss_pred HhcCCCcchHHHHHHHHHHCCCCeEEEe
Confidence 12456778888899876554
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-16 Score=124.19 Aligned_cols=126 Identities=16% Similarity=0.184 Sum_probs=94.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.+++.+++. + ...++|+|+++.+++.+++++..+++..+++++|+.+. +.+||+|+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~----~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~~D~v~ 117 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLL----G-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-----NSRVDIVI 117 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-----CCCCSEEE
T ss_pred CCcCEEEEeeCCCCHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHc-----CCCCCEEE
Confidence 46789999999999999888765 2 23799999999999999999988887668999998874 25899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
+||||+...... ...+++.+.+++ ||.+++........+.+.+.+.+.||....+.
T Consensus 118 ~~~p~~~~~~~~-------------------~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 118 MNPPFGSQRKHA-------------------DRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp ECCCCSSSSTTT-------------------THHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EcCCCccccCCc-------------------hHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEEE
Confidence 999997654311 245677777777 55444322233345567778888898765544
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=130.12 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=103.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..++.++..+. +++.|+|+|+++.+++.+++|+..+++.+ .++++|+.+... .+++||+|
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~---~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--~~~~fD~I 191 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMR---NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--LNVEFDKI 191 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTT---TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--GCCCEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--ccccCCEE
Confidence 5788999999999999999988742 34699999999999999999999998854 899999877643 35689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCC----CCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHcCCc
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGG----ENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEKGYA 192 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~g~~ 192 (256)
++|+|+.....-. +.+...+.-. .........++..+.++|||||++++++++.. ....+...+++.+|+
T Consensus 192 l~d~Pcsg~g~~~---~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~ 268 (315)
T 1ixk_A 192 LLDAPCTGSGTIH---KNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 268 (315)
T ss_dssp EEECCTTSTTTCC-----------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred EEeCCCCCccccc---CChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence 9999975332110 1111111000 00112346889999999999999999887553 233456667777755
Q ss_pred E
Q 025207 193 A 193 (256)
Q Consensus 193 ~ 193 (256)
.
T Consensus 269 ~ 269 (315)
T 1ixk_A 269 L 269 (315)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=130.44 Aligned_cols=133 Identities=12% Similarity=0.076 Sum_probs=101.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|.++..++.. . ..+++|+|+++.+++.|++++...+. ...++.+|+.+.. ..+++||+|+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~ 151 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLP----L-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT--PEPDSYDVIW 151 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTT----T-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC--CCSSCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHh----c-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC--CCCCCEEEEE
Confidence 6899999999999987665543 3 45899999999999999998876532 2378899987653 2346899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------CHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------DPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~~ 186 (256)
++..+.+.++. ....++..+.++|+|||++++..+... ...++.+++
T Consensus 152 ~~~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (241)
T 2ex4_A 152 IQWVIGHLTDQ-------------------HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRII 212 (241)
T ss_dssp EESCGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHH
T ss_pred EcchhhhCCHH-------------------HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHH
Confidence 97654433321 246889999999999999999664221 467899999
Q ss_pred HHcCCcEEEEEecC
Q 025207 187 MEKGYAARIVVQRS 200 (256)
Q Consensus 187 ~~~g~~~~~~~~~~ 200 (256)
.+.||+........
T Consensus 213 ~~aGf~~~~~~~~~ 226 (241)
T 2ex4_A 213 CSAGLSLLAEERQE 226 (241)
T ss_dssp HHTTCCEEEEEECC
T ss_pred HHcCCeEEEeeecC
Confidence 99999987766543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=129.47 Aligned_cols=128 Identities=19% Similarity=0.215 Sum_probs=98.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. . .+++|+|+++.+++.|++++...+... .++.+|+.+. ++.+++||+|
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l--~~~~~~fD~V 107 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPF----V--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM--PFTDERFHIV 107 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGG----S--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC--CSCTTCEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHh----C--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC--CCCCCCEEEE
Confidence 47899999999999987766654 3 389999999999999999998887654 8999998775 3446899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
+++..+.+.++ ...++.++.++|||||++++.....
T Consensus 108 ~~~~~l~~~~d---------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (260)
T 1vl5_A 108 TCRIAAHHFPN---------------------PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHR 166 (260)
T ss_dssp EEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCC
T ss_pred EEhhhhHhcCC---------------------HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccC
Confidence 99866544332 4688999999999999999965322
Q ss_pred -CCHHHHHHHHHHcCCcEEEEE
Q 025207 177 -NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 -~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++.+++.+.||....+.
T Consensus 167 ~~~~~~~~~~l~~aGf~~~~~~ 188 (260)
T 1vl5_A 167 AWKKSDWLKMLEEAGFELEELH 188 (260)
T ss_dssp CCBHHHHHHHHHHHTCEEEEEE
T ss_pred CCCHHHHHHHHHHCCCeEEEEE
Confidence 123466777888888765443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=129.69 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=100.9
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025207 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
..+.+.+.+... .++.+|||+|||+|.++..++.. + .+++|+|+++.+++.|+++... ..+++.+|+.+
T Consensus 29 ~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~ 97 (250)
T 2p7i_A 29 MHPFMVRAFTPF--FRPGNLLELGSFKGDFTSRLQEH----F--NDITCVEASEEAISHAQGRLKD---GITYIHSRFED 97 (250)
T ss_dssp HHHHHHHHHGGG--CCSSCEEEESCTTSHHHHHHTTT----C--SCEEEEESCHHHHHHHHHHSCS---CEEEEESCGGG
T ss_pred HHHHHHHHHHhh--cCCCcEEEECCCCCHHHHHHHHh----C--CcEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHH
Confidence 344555554332 36789999999999987666554 3 3799999999999999987543 44889999887
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh-hccccCeEEEEEEeCCC--------
Q 025207 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD-KLLSKRGWLYLVTLTAN-------- 177 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~-------- 177 (256)
.. .+++||+|++.-.+.+.++ ...+++++. ++|||||++++..+...
T Consensus 98 ~~---~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 153 (250)
T 2p7i_A 98 AQ---LPRRYDNIVLTHVLEHIDD---------------------PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAV 153 (250)
T ss_dssp CC---CSSCEEEEEEESCGGGCSS---------------------HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHH
T ss_pred cC---cCCcccEEEEhhHHHhhcC---------------------HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHH
Confidence 62 3578999999765443322 468899999 99999999999886432
Q ss_pred ------------------------CHHHHHHHHHHcCCcEEEEE
Q 025207 178 ------------------------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 ------------------------~~~~~~~~~~~~g~~~~~~~ 197 (256)
...++.+++++.||+...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 154 KMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp HTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 34467788888888876554
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=132.73 Aligned_cols=137 Identities=20% Similarity=0.217 Sum_probs=108.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.++. ...++++|+|+|+++.+++.|++++...++. .+++.+|+.+.. + +++||+
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-~~~fD~ 190 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDY---SACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD--T-REGYDL 190 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCC---TTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC--C-CSCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHH---hcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC--c-cCCeEE
Confidence 5789999999999998665531 2267889999999999999999999888876 489999998863 2 388999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
|+++.++.+.++.+ ....+++.+.++|||||++++.....
T Consensus 191 v~~~~~~~~~~~~~------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~ 252 (305)
T 3ocj_A 191 LTSNGLNIYEPDDA------------------RVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQL 252 (305)
T ss_dssp EECCSSGGGCCCHH------------------HHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHH
T ss_pred EEECChhhhcCCHH------------------HHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhh
Confidence 99998877655422 24568999999999999999866221
Q ss_pred ----------------CCHHHHHHHHHHcCCcEEEEEecCC
Q 025207 177 ----------------NDPSQICLQMMEKGYAARIVVQRST 201 (256)
Q Consensus 177 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~ 201 (256)
....++.+.+++.||....+.....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 293 (305)
T 3ocj_A 253 QQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRA 293 (305)
T ss_dssp HHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTT
T ss_pred hhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcccC
Confidence 2467889999999999877765433
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=128.65 Aligned_cols=130 Identities=21% Similarity=0.278 Sum_probs=102.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.|++++...++. .+++.+|+.+.. .+.+++||+
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~ 139 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAER------GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA-SHLETPVDL 139 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG-GGCSSCEEE
T ss_pred CCCCEEEEeCCcchHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh-hhcCCCceE
Confidence 34789999999999998877765 569999999999999999999888874 389999998764 234689999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
|+++..+.+.++ ...+++.+.++|||||++++..+..
T Consensus 140 v~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (285)
T 4htf_A 140 ILFHAVLEWVAD---------------------PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPK 198 (285)
T ss_dssp EEEESCGGGCSC---------------------HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCC
T ss_pred EEECchhhcccC---------------------HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccc
Confidence 999866654432 4678999999999999999976421
Q ss_pred -----------CCHHHHHHHHHHcCCcEEEEEe
Q 025207 177 -----------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 -----------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
-...++..++++.||+...+..
T Consensus 199 ~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~ 231 (285)
T 4htf_A 199 KKKRTLSPDYPRDPTQVYLWLEEAGWQIMGKTG 231 (285)
T ss_dssp C----CCCSCCBCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccCCCCCCCCHHHHHHHHHHCCCceeeeee
Confidence 1246788888889998765543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=126.05 Aligned_cols=128 Identities=11% Similarity=0.140 Sum_probs=100.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. ++. +++|+|+++.+++.|+++.. .....++.+|+.+. ++.+++||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~--~~~~~~fD~v~ 113 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEH----GAK-KVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDI--AIEPDAYNVVL 113 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT----TCS-EEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGC--CCCTTCEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHc----CCC-EEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhC--CCCCCCeEEEE
Confidence 47899999999999998887775 333 89999999999999998765 22348999998765 23458999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------------------------
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------------ 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------ 176 (256)
++..+.+..+ ...+++.+.++|||||++++..+..
T Consensus 114 ~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (253)
T 3g5l_A 114 SSLALHYIAS---------------------FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVD 172 (253)
T ss_dssp EESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEEC
T ss_pred Echhhhhhhh---------------------HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEec
Confidence 9766544322 5788999999999999999964321
Q ss_pred ---------------------CCHHHHHHHHHHcCCcEEEEEe
Q 025207 177 ---------------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 ---------------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....++.+.+++.||+...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e 215 (253)
T 3g5l_A 173 RYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIE 215 (253)
T ss_dssp CTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEEC
T ss_pred cccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeec
Confidence 0567899999999999877663
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-15 Score=119.92 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+...++..+. +..+++.+|||+|||+|.++..++..+ ++.+|+|+|+|+.+++.+.+..... .+..++.+|+
T Consensus 41 ~~l~~~~~~~l~-~~~~~g~~VLDlGcGtG~~~~~la~~~----~~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~ 114 (210)
T 1nt2_A 41 SKLAAMILKGHR-LKLRGDERVLYLGAASGTTVSHLADIV----DEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDA 114 (210)
T ss_dssp CHHHHHHHTSCC-CCCCSSCEEEEETCTTSHHHHHHHHHT----TTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCT
T ss_pred HHHHHHHHhhcc-cCCCCCCEEEEECCcCCHHHHHHHHHc----CCCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCC
Confidence 344444555443 333578899999999999998888873 3458999999999987776655433 2336777887
Q ss_pred hhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-----CCC
Q 025207 105 ASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-----AND 178 (256)
Q Consensus 105 ~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~ 178 (256)
..... ....++||+|+++.+.. .....++.++.++|||||+++++... ...
T Consensus 115 ~~~~~~~~~~~~fD~V~~~~~~~-----------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 171 (210)
T 1nt2_A 115 SKPWKYSGIVEKVDLIYQDIAQK-----------------------NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAE 171 (210)
T ss_dssp TCGGGTTTTCCCEEEEEECCCST-----------------------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSC
T ss_pred CCchhhcccccceeEEEEeccCh-----------------------hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCC
Confidence 66421 11247899999984210 01345689999999999999997532 112
Q ss_pred HHHHH----HHHHHcCCcEEEEEec
Q 025207 179 PSQIC----LQMMEKGYAARIVVQR 199 (256)
Q Consensus 179 ~~~~~----~~~~~~g~~~~~~~~~ 199 (256)
.+++. +.+++. |+.......
T Consensus 172 ~~~~~~~~~~~l~~~-f~~~~~~~~ 195 (210)
T 1nt2_A 172 PEEVFKSVLKEMEGD-FKIVKHGSL 195 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred HHHHHHHHHHHHHhh-cEEeeeecC
Confidence 33332 236666 876555443
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-15 Score=134.93 Aligned_cols=189 Identities=17% Similarity=0.128 Sum_probs=128.4
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.|.....+..++..++. ..++.+|||+|||+|..++.++..+. ..+.|+|+|+++.+++.+++|+.+++
T Consensus 84 ~G~~~vQd~ss~l~~~~L~------~~~g~~VLDlcaGpGgkt~~lA~~~~---~~g~V~AvDis~~rl~~~~~n~~r~g 154 (456)
T 3m4x_A 84 AGYEYSQEPSAMIVGTAAA------AKPGEKVLDLCAAPGGKSTQLAAQMK---GKGLLVTNEIFPKRAKILSENIERWG 154 (456)
T ss_dssp TTSCEECCTTTHHHHHHHC------CCTTCEEEESSCTTCHHHHHHHHHHT---TCSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEECHHHHHHHHHcC------CCCCCEEEEECCCcCHHHHHHHHHcC---CCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 3444444444444444443 25789999999999999999998754 24689999999999999999999999
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEE
Q 025207 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l 169 (256)
+.+ .++++|..+.... .+++||+|++|||+.... ...+.+...+.-..... .....++..+.++|||||++
T Consensus 155 ~~nv~v~~~Da~~l~~~-~~~~FD~Il~DaPCSg~G---~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~L 230 (456)
T 3m4x_A 155 VSNAIVTNHAPAELVPH-FSGFFDRIVVDAPCSGEG---MFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQL 230 (456)
T ss_dssp CSSEEEECCCHHHHHHH-HTTCEEEEEEECCCCCGG---GTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred CCceEEEeCCHHHhhhh-ccccCCEEEECCCCCCcc---ccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 875 8888998776432 357899999999975322 12223333332222211 23457899999999999999
Q ss_pred EEEEeCCC---CHHHHHHHHHHcCCcEE-------------------------EEEecCCCCccEEEEEEEecCc
Q 025207 170 YLVTLTAN---DPSQICLQMMEKGYAAR-------------------------IVVQRSTEEENLHIIKFWRDFD 216 (256)
Q Consensus 170 ~~~~~~~~---~~~~~~~~~~~~g~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~~ 216 (256)
++++++.. ....+...+.+++|+.. .+++.....+.+++....|...
T Consensus 231 vYsTCs~~~eEne~vv~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~k~~~ 305 (456)
T 3m4x_A 231 IYSTCTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGEGHFVAKLTFHGQ 305 (456)
T ss_dssp EEEESCCCGGGTHHHHHHHHHHSSEEEECCCCSSCCEECCGGGSSSTTGGGSEEECTTTSSSSCEEEEEEEECSC
T ss_pred EEEEeecccccCHHHHHHHHHhCCCEEEeccccccccccccccccccccCCeEEECCCCCCCcCeEEEEEEECCC
Confidence 99888664 23356666666664332 2233334556677777777554
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-16 Score=125.52 Aligned_cols=107 Identities=12% Similarity=0.136 Sum_probs=85.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..++.. ++ +++|+|+++.+++.|+++...++...+++.+|+.+.. ..+++||+|++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~----~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~ 109 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDY----GF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS--FEDKTFDYVIF 109 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT----TC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC--SCTTCEEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHc----CC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC--CCCCcEEEEEE
Confidence 4789999999999998777765 33 8999999999999999999887755589999987742 33578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
++++.... ......+++.+.++|+|||++++..+.
T Consensus 110 ~~~~~~~~-------------------~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 110 IDSIVHFE-------------------PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp ESCGGGCC-------------------HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCchHhCC-------------------HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 98822111 122568899999999999999997754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-15 Score=126.66 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcc
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d 103 (256)
.+.+.+++.+. ..++.+|||+|||+|.++..+++. . +++++|+|+++.+++.+++++...++. ..++.+|
T Consensus 48 ~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d 119 (273)
T 3bus_A 48 RLTDEMIALLD---VRSGDRVLDVGCGIGKPAVRLATA----R-DVRVTGISISRPQVNQANARATAAGLANRVTFSYAD 119 (273)
T ss_dssp HHHHHHHHHSC---CCTTCEEEEESCTTSHHHHHHHHH----S-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred HHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHh----c-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECc
Confidence 34444555442 357899999999999998888775 3 569999999999999999999888865 4899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------ 177 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------ 177 (256)
+.+. ++.+++||+|+++..+.+.++ ...++..+.++|||||++++......
T Consensus 120 ~~~~--~~~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 176 (273)
T 3bus_A 120 AMDL--PFEDASFDAVWALESLHHMPD---------------------RGRALREMARVLRPGGTVAIADFVLLAPVEGA 176 (273)
T ss_dssp TTSC--CSCTTCEEEEEEESCTTTSSC---------------------HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHH
T ss_pred cccC--CCCCCCccEEEEechhhhCCC---------------------HHHHHHHHHHHcCCCeEEEEEEeeccCCCChh
Confidence 8775 334578999999877765543 46889999999999999998764321
Q ss_pred ------------------CHHHHHHHHHHcCCcEEEEEe
Q 025207 178 ------------------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 ------------------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...++.+.+++.||....+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 215 (273)
T 3bus_A 177 KKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVD 215 (273)
T ss_dssp HHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEE
Confidence 234566777778887655443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-15 Score=134.90 Aligned_cols=140 Identities=18% Similarity=0.203 Sum_probs=106.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-c--ceEEEcchhhchhhhc--CCCc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-H--ADLINTDIASGLEKRL--AGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~--~~~~~~d~~~~~~~~~--~~~f 116 (256)
++.+|||+|||+|.+++.++.. + ..+|+|+|+++.+++.|++|+..+++ . .+++.+|+.+...... ..+|
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~----g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMG----G-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeeccCCHHHHHHHHC----C-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCC
Confidence 6789999999999999988875 2 34899999999999999999999998 4 4999999988755322 4689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH-----HHHHHHHHHcCC
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP-----SQICLQMMEKGY 191 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~g~ 191 (256)
|+|++|||++..+.... .. ....+..++..+.++|+|||++++++++.... ..+...+.+.|+
T Consensus 295 D~Ii~dpP~~~~~~~~~---------~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~ 362 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQL---------MG---ACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_dssp EEEEECCSSTTTCSSSS---------SC---CCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCCChhHH---------HH---HHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999876543211 11 11236788999999999999999987765432 223445666776
Q ss_pred cEEEEEe
Q 025207 192 AARIVVQ 198 (256)
Q Consensus 192 ~~~~~~~ 198 (256)
....+..
T Consensus 363 ~~~~i~~ 369 (396)
T 3c0k_A 363 DVQFIEQ 369 (396)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 6655543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-16 Score=136.30 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=104.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhh--cCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKR--LAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~--~~~~fD~ 118 (256)
++.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.|++|+..+++.+ +++.+|+.+..... ...+||+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 282 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDL 282 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeE
Confidence 5689999999999999998886 2489999999999999999999999874 99999998876532 1568999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH-----HHHHHHHHcCCcE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS-----QICLQMMEKGYAA 193 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~g~~~ 193 (256)
|++|||++..+..... .....+..++..+.++|+|||++++++++..... .+.+.+.+.|...
T Consensus 283 Ii~dpP~~~~~~~~~~------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 350 (382)
T 1wxx_A 283 VVLDPPAFAKGKKDVE------------RAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL 350 (382)
T ss_dssp EEECCCCSCCSTTSHH------------HHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEECCCCCCCChhHHH------------HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 9999998765442210 0123467889999999999999999887654332 2334555666555
Q ss_pred EEEE
Q 025207 194 RIVV 197 (256)
Q Consensus 194 ~~~~ 197 (256)
..+.
T Consensus 351 ~~i~ 354 (382)
T 1wxx_A 351 RVVE 354 (382)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-15 Score=120.53 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=107.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+...++..+..+..+++.+|||+|||+|..+..++..++ +++.|+|+|+++.+++.+.+..... .+..++.+|
T Consensus 58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~---~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~D 133 (232)
T 3id6_C 58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIE---LNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLAD 133 (232)
T ss_dssp TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHT---TTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECC
T ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhC---CCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcc
Confidence 456677777777655567899999999999999999988764 4669999999999976555444332 234788899
Q ss_pred hhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----
Q 025207 104 IASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----- 177 (256)
Q Consensus 104 ~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----- 177 (256)
+..... ....++||+|+++.+.. . ....+...+.+.|||||+++++.....
T Consensus 134 a~~~~~~~~~~~~~D~I~~d~a~~---~--------------------~~~il~~~~~~~LkpGG~lvisik~~~~d~t~ 190 (232)
T 3id6_C 134 ARFPQSYKSVVENVDVLYVDIAQP---D--------------------QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTK 190 (232)
T ss_dssp TTCGGGTTTTCCCEEEEEECCCCT---T--------------------HHHHHHHHHHHHEEEEEEEEEEEC-------C
T ss_pred cccchhhhccccceEEEEecCCCh---h--------------------HHHHHHHHHHHhCCCCeEEEEEEccCCcccCC
Confidence 876432 12246899999986641 0 023344566669999999998742211
Q ss_pred ----CHHHHHHHHHHcCCcEEEEEec-CCCCccEEEE
Q 025207 178 ----DPSQICLQMMEKGYAARIVVQR-STEEENLHII 209 (256)
Q Consensus 178 ----~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~ 209 (256)
........+++.||+....... .....+..++
T Consensus 191 ~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~ 227 (232)
T 3id6_C 191 DPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVL 227 (232)
T ss_dssp CSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEE
Confidence 2345667888889887654432 2333454444
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-16 Score=137.07 Aligned_cols=152 Identities=13% Similarity=0.166 Sum_probs=113.1
Q ss_pred eeccCCccccCC--chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 11 VSSHPEVYEPCD--DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~~~~p~~--~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|+.|.+.. .++.+++++++.+. ..++.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.|++
T Consensus 256 ~~~~~~~f~q~n~~~~e~l~~~~~~~l~---~~~~~~VLDlgcG~G~~~~~la~~------~~~V~gvD~s~~al~~A~~ 326 (433)
T 1uwv_A 256 LTFSPRDFIQVNAGVNQKMVARALEWLD---VQPEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQ 326 (433)
T ss_dssp EECCSSSCCCSBHHHHHHHHHHHHHHHT---CCTTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHH
T ss_pred EEECcccccccCHHHHHHHHHHHHHhhc---CCCCCEEEECCCCCCHHHHHHHhh------CCEEEEEeCCHHHHHHHHH
Confidence 667888877743 48888888887764 246789999999999999888765 4589999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 89 TLEAHNVHA-DLINTDIASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
|+..+++.. .++.+|+.+.+.. +.+++||+|++|||+... ..+++.+. .++|
T Consensus 327 n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~------------------------~~~~~~l~-~~~p 381 (433)
T 1uwv_A 327 NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA------------------------AGVMQQII-KLEP 381 (433)
T ss_dssp HHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC------------------------HHHHHHHH-HHCC
T ss_pred HHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH------------------------HHHHHHHH-hcCC
Confidence 999998864 9999999885432 345689999999998521 23344443 3789
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
+++++++..... ...-...+.+.||....+.
T Consensus 382 ~~ivyvsc~p~t-lard~~~l~~~Gy~~~~~~ 412 (433)
T 1uwv_A 382 IRIVYVSCNPAT-LARDSEALLKAGYTIARLA 412 (433)
T ss_dssp SEEEEEESCHHH-HHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEECChHH-HHhhHHHHHHCCcEEEEEE
Confidence 998888554333 3333455666788876543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.7e-16 Score=124.04 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=103.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +++++|+|+++.+++.+++++. ...+++.+|+.+... . ++||+|+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~~--~-~~fD~v~ 111 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA------GRTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEV--P-TSIDTIV 111 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT------TCEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCC--C-SCCSEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC------CCeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcCC--C-CCeEEEE
Confidence 47899999999999998877764 4699999999999999998764 234889999887532 2 7899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----------------------
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----------------------- 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------- 177 (256)
++..+.+.++.+ ...++..+.++|||||++++..+...
T Consensus 112 ~~~~l~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (220)
T 3hnr_A 112 STYAFHHLTDDE-------------------KNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLAND 172 (220)
T ss_dssp EESCGGGSCHHH-------------------HHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ECcchhcCChHH-------------------HHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhh
Confidence 987665443321 24589999999999999999864322
Q ss_pred -------CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025207 178 -------DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 178 -------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
..+++...+++.||+....... ...+++...+..
T Consensus 173 ~~~~~~~~~~~~~~~l~~aGf~v~~~~~~----~~~w~~~~~~~~ 213 (220)
T 3hnr_A 173 LQTEYYTRIPVMQTIFENNGFHVTFTRLN----HFVWVMEATKQL 213 (220)
T ss_dssp HHHSCCCBHHHHHHHHHHTTEEEEEEECS----SSEEEEEEEECS
T ss_pred cchhhcCCHHHHHHHHHHCCCEEEEeecc----ceEEEEeehhhh
Confidence 2367788889999975544433 344555555544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-16 Score=128.83 Aligned_cols=143 Identities=14% Similarity=0.137 Sum_probs=98.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhh--cCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKR--LAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~--~~~~fD 117 (256)
.++.+|||+|||+|..+..++..+. ....|+|+|+++.+++.+++|+..+++.. .++++|+.+..... ..++||
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD 158 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMK---NKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFD 158 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTT---TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcC---CCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCC
Confidence 5789999999999999999888742 12699999999999999999999998754 89999988764321 246899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
+|+++||+...........+..... .........++..+.++|||||++++++++.. ....+...+.+.
T Consensus 159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~ 230 (274)
T 3ajd_A 159 KILLDAPCSGNIIKDKNRNVSEEDI---KYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKR 230 (274)
T ss_dssp EEEEEECCC------------HHHH---TGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHC
T ss_pred EEEEcCCCCCCcccccCCCCCHHHH---HHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhC
Confidence 9999999864322110000000000 00011257889999999999999999887553 233444555443
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=124.44 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+.+.+.+.+... ..++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++....+....++.+|
T Consensus 20 ~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d 92 (246)
T 1y8c_A 20 YKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCC
T ss_pred HHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHC------CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecc
Confidence 345556665555322 136789999999999987766654 4589999999999999999998877666899999
Q ss_pred hhhchhhhcCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.+... +++||+|+++. .+.+.+.. .....+++.+.++|+|||++++..
T Consensus 93 ~~~~~~---~~~fD~v~~~~~~l~~~~~~------------------~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 93 ISNLNI---NRKFDLITCCLDSTNYIIDS------------------DDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GGGCCC---SCCEEEEEECTTGGGGCCSH------------------HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccCCc---cCCceEEEEcCccccccCCH------------------HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 877532 27899999986 55443221 236788999999999999999843
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=133.76 Aligned_cols=145 Identities=16% Similarity=0.119 Sum_probs=106.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|..+..++.. .+++.|+|+|+++.+++.+++|+..+++...++++|+.+....+.+++||+|+
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~----~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl 320 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEV----APEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRIL 320 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHH----CTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEE
T ss_pred CCcCeEEEECCCchHHHHHHHHH----cCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEE
Confidence 57889999999999999999887 44579999999999999999999999887789999988764333447899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc-CCc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK-GYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~-g~~ 192 (256)
+|||+..... ..+.+...|....... .....++..+.++|||||++++++++.. ....+...+.++ +|.
T Consensus 321 ~D~Pcsg~g~---~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~ 397 (429)
T 1sqg_A 321 LDAPCSATGV---IRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAE 397 (429)
T ss_dssp EECCCCCGGG---TTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCE
T ss_pred EeCCCCcccc---cCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCE
Confidence 9999864322 1122222222111111 1346889999999999999999887654 233455666665 354
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-15 Score=127.48 Aligned_cols=115 Identities=14% Similarity=0.157 Sum_probs=91.9
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCcc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD 117 (256)
..++.+|||+|||+|.++..+++.. + ++|+|+|+++.+++.|++++...++. .+++.+|+.+. +++||
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~----~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~fD 139 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEY----D-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----DEPVD 139 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH----C-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----CCCCS
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhC----C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----CCCcc
Confidence 3578899999999999998888763 3 68999999999999999999988876 38999998765 57999
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+|+++..+.+.++++.. .+......+++.+.++|||||++++.....
T Consensus 140 ~v~~~~~~~~~~d~~~~------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 140 RIVSLGAFEHFADGAGD------------AGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp EEEEESCGGGTTCCSSC------------CCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred EEEEcchHHhcCccccc------------cchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 99998776655443100 011236789999999999999999977543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-15 Score=132.78 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=118.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|..++.++..+. ..+.|+|+|+++.+++.+++|+.++++...++++|+.+... ..+++||+|+
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~---~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~-~~~~~FD~Il 175 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMG---GKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAE-AFGTYFHRVL 175 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTT---TCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHH-HHCSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhh-hccccCCEEE
Confidence 5789999999999999999998753 23689999999999999999999998877888999877642 2357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEEEEEEeCCCC---HHHHHHHHHHc-CCc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWLYLVTLTAND---PSQICLQMMEK-GYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~-g~~ 192 (256)
+|||+..... ..+.+...+.-..... .....++..+.++|||||++++++++... ...+...+.++ +|+
T Consensus 176 ~D~PcSg~G~---~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~ 252 (464)
T 3m6w_A 176 LDAPCSGEGM---FRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFR 252 (464)
T ss_dssp EECCCCCGGG---TTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEE
T ss_pred ECCCcCCccc---cccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcE
Confidence 9999853221 1122222221111111 23477899999999999999998886542 33455555554 343
Q ss_pred EE--------------------------EEEecCCCCccEEEEEEEecCc
Q 025207 193 AR--------------------------IVVQRSTEEENLHIIKFWRDFD 216 (256)
Q Consensus 193 ~~--------------------------~~~~~~~~~~~~~l~~~~~~~~ 216 (256)
.. .+++.....+.+++....|...
T Consensus 253 l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~A~l~k~~~ 302 (464)
T 3m6w_A 253 LEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKEGG 302 (464)
T ss_dssp EECCCCSTTSEECCGGGTTTCGGGGGSEEECTTTSSSSCEEEEEEEECSC
T ss_pred EEecccccccccCcccccccccccCCeEEECCCCCCceeEEEEEEEECCC
Confidence 22 2333444556777777777644
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=124.49 Aligned_cols=131 Identities=12% Similarity=0.119 Sum_probs=96.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch-hhhcCCCccE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL-EKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~fD~ 118 (256)
..++.+|||+|||+|.++..+++.+ .++.+|+|+|+++.+++.+.++...+ ....++.+|+.+.. .+...++||+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~---g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIV---GPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDV 150 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHH---CTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEE
Confidence 3578899999999999999888874 24569999999999988888887765 23488999988743 2334578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------CHHHHHHHHHH
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----------DPSQICLQMME 188 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~~~~~~~~~ 188 (256)
|++++|. ++ ....++..+.+.|||||++++...... ...+ .+.+.+
T Consensus 151 V~~~~~~---~~--------------------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~ 206 (233)
T 2ipx_A 151 IFADVAQ---PD--------------------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQ 206 (233)
T ss_dssp EEECCCC---TT--------------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGG
T ss_pred EEEcCCC---cc--------------------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHH
Confidence 9998871 11 134568889999999999999654310 1122 466777
Q ss_pred cCCcEEEEEe
Q 025207 189 KGYAARIVVQ 198 (256)
Q Consensus 189 ~g~~~~~~~~ 198 (256)
.||.......
T Consensus 207 ~Gf~~~~~~~ 216 (233)
T 2ipx_A 207 ENMKPQEQLT 216 (233)
T ss_dssp GTEEEEEEEE
T ss_pred CCCceEEEEe
Confidence 8998766443
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-16 Score=130.13 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=94.6
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
.+.+.+.+.+.. ..++.+|||+|||+|.++..++.. .| +++|+|+|+++.+++.|++++...+.+.+++.+|+
T Consensus 8 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~ 81 (284)
T 3gu3_A 8 DYVSFLVNTVWK--ITKPVHIVDYGCGYGYLGLVLMPL----LPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA 81 (284)
T ss_dssp HHHHHHHHTTSC--CCSCCEEEEETCTTTHHHHHHTTT----SCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCT
T ss_pred HHHHHHHHHHhc--cCCCCeEEEecCCCCHHHHHHHHh----CCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcch
Confidence 445555555533 247899999999999987776655 55 47999999999999999999887776669999999
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.+... +++||+|+++..+.+.++ ...+++++.++|||||++++..+.
T Consensus 82 ~~~~~---~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 82 TEIEL---NDKYDIAICHAFLLHMTT---------------------PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp TTCCC---SSCEEEEEEESCGGGCSS---------------------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCc---CCCeeEEEECChhhcCCC---------------------HHHHHHHHHHHcCCCCEEEEEecc
Confidence 87532 468999999766544332 468899999999999999987765
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-15 Score=122.22 Aligned_cols=144 Identities=14% Similarity=0.067 Sum_probs=100.3
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.++..+..+...++.+|||+|||+|.++..++.. .+..+|+|+|+++.+++.+++++..+ .+..++.+|+.
T Consensus 58 ~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~----~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~ 132 (230)
T 1fbn_A 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADI----ADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDAN 132 (230)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHH----TTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTT
T ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHH----cCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCC
Confidence 33455533333333357889999999999999988887 34569999999999999999987655 23478889987
Q ss_pred hchh--hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--C----
Q 025207 106 SGLE--KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--N---- 177 (256)
Q Consensus 106 ~~~~--~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~---- 177 (256)
+... +. .++||+|+.+++.. .....++..+.+.|+|||+++++.... .
T Consensus 133 ~~~~~~~~-~~~~D~v~~~~~~~-----------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 188 (230)
T 1fbn_A 133 KPQEYANI-VEKVDVIYEDVAQP-----------------------NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD 188 (230)
T ss_dssp CGGGGTTT-SCCEEEEEECCCST-----------------------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC
T ss_pred Cccccccc-CccEEEEEEecCCh-----------------------hHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCC
Confidence 6321 22 26899999764310 014677999999999999999963211 1
Q ss_pred ----CHHHHHHHHHHcCCcEEEEEec
Q 025207 178 ----DPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 178 ----~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
...++. .+.+.||........
T Consensus 189 ~~~~~~~~l~-~l~~~Gf~~~~~~~~ 213 (230)
T 1fbn_A 189 PKEIFKEQKE-ILEAGGFKIVDEVDI 213 (230)
T ss_dssp HHHHHHHHHH-HHHHHTEEEEEEEEC
T ss_pred HHHhhHHHHH-HHHHCCCEEEEEEcc
Confidence 114455 778889987665543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.4e-16 Score=135.15 Aligned_cols=120 Identities=14% Similarity=0.142 Sum_probs=93.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhc--CCCc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRL--AGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~--~~~f 116 (256)
++.+|||+|||+|.+++.++.. + ..+|+|+|+++.+++.|++|+..+++. .+++++|+.+.+.... ..+|
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~----g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMG----G-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT----T-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEeeccCHHHHHHHHC----C-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCc
Confidence 5789999999999999988874 1 238999999999999999999999985 3899999988654321 3589
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
|+|++|||++..+... .......+..++..+.++|+|||+++++++....
T Consensus 287 D~Ii~DPP~~~~~~~~------------~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~ 336 (385)
T 2b78_A 287 DIIIIDPPSFARNKKE------------VFSVSKDYHKLIRQGLEILSENGLIIASTNAANM 336 (385)
T ss_dssp EEEEECCCCC-----C------------CCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred cEEEECCCCCCCChhh------------HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence 9999999996432110 1122345677889999999999999998775553
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-16 Score=129.51 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=106.5
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
..++.+++.+. ..++.+|||+|||+|.++..++... +++|+|+|+++.+++.|+++.... ...+++.+|+.
T Consensus 42 ~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~ 112 (266)
T 3ujc_A 42 EATKKILSDIE---LNENSKVLDIGSGLGGGCMYINEKY-----GAHTHGIDICSNIVNMANERVSGN-NKIIFEANDIL 112 (266)
T ss_dssp HHHHHHTTTCC---CCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTT
T ss_pred HHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccc
Confidence 33444444432 3578899999999999998888863 469999999999999999876543 23488999988
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--------- 176 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------- 176 (256)
+. ++.+++||+|+++..+.+.+. .....+++.+.++|||||++++..+..
T Consensus 113 ~~--~~~~~~fD~v~~~~~l~~~~~-------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 171 (266)
T 3ujc_A 113 TK--EFPENNFDLIYSRDAILALSL-------------------ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDE 171 (266)
T ss_dssp TC--CCCTTCEEEEEEESCGGGSCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHH
T ss_pred cC--CCCCCcEEEEeHHHHHHhcCh-------------------HHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHH
Confidence 75 334689999999766554321 236788999999999999999976422
Q ss_pred ------------CCHHHHHHHHHHcCCcEEEEE
Q 025207 177 ------------NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 ------------~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++.+.+++.||....+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 172 FKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204 (266)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 135678888888888776554
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-16 Score=130.63 Aligned_cols=125 Identities=13% Similarity=0.129 Sum_probs=101.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCcc-eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++.+ .++.+++++|+++.+++.|++++..+ +... +++.+|+.+.. .+++||+
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~~~~fD~ 182 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYAL---NGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---SDQMYDA 182 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---TTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---CSCCEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHc---CCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---cCCCccE
Confidence 577899999999999998888764 35679999999999999999999888 7544 89999987743 2468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|++++|- ...+++.+.++|+|||+++++.+.......+.+.+.+.||....+.
T Consensus 183 Vi~~~~~--------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 183 VIADIPD--------------------------PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETV 235 (275)
T ss_dssp EEECCSC--------------------------GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEE
T ss_pred EEEcCcC--------------------------HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEE
Confidence 9998762 2366889999999999999988766555677778888888765544
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-16 Score=126.38 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=103.3
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..++.+|||+|||+|.++..++... ..+++|+|+++.+++.|++++... ....++.+|+.+. ++.+++||+|
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~--~~~~~~fD~v 162 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL-----YATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETA--TLPPNTYDLI 162 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH-----CSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGC--CCCSSCEEEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh-----cCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHC--CCCCCCeEEE
Confidence 3578999999999999988887763 347999999999999999987544 2348889998775 2345789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHH
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICL 184 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~ 184 (256)
++...+.+.+. .....++..+.++|||||++++..+.. ....++.+
T Consensus 163 ~~~~~l~~~~~-------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (254)
T 1xtp_A 163 VIQWTAIYLTD-------------------ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR 223 (254)
T ss_dssp EEESCGGGSCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHH
T ss_pred EEcchhhhCCH-------------------HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHH
Confidence 99766543322 126788999999999999999977421 13478899
Q ss_pred HHHHcCCcEEEEEecC
Q 025207 185 QMMEKGYAARIVVQRS 200 (256)
Q Consensus 185 ~~~~~g~~~~~~~~~~ 200 (256)
++++.||+...+....
T Consensus 224 ~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 224 LFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHTCCEEEEEECT
T ss_pred HHHHCCCEEEEeeecC
Confidence 9999999987765543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.5e-16 Score=124.81 Aligned_cols=122 Identities=11% Similarity=0.064 Sum_probs=94.3
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---
Q 025207 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--- 96 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--- 96 (256)
+.+.+..+...+..... .+++.+|||+|||+|..++.++..+ .++++|+++|+++++++.|++++...++.
T Consensus 37 i~~~~~~~l~~l~~~~~---~~~~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~ 110 (221)
T 3dr5_A 37 PDEMTGQLLTTLAATTN---GNGSTGAIAITPAAGLVGLYILNGL---ADNTTLTCIDPESEHQRQAKALFREAGYSPSR 110 (221)
T ss_dssp CCHHHHHHHHHHHHHSC---CTTCCEEEEESTTHHHHHHHHHHHS---CTTSEEEEECSCHHHHHHHHHHHHHTTCCGGG
T ss_pred CCHHHHHHHHHHHHhhC---CCCCCCEEEEcCCchHHHHHHHHhC---CCCCEEEEEECCHHHHHHHHHHHHHcCCCcCc
Confidence 33334445555544321 1234599999999999999998874 24679999999999999999999998876
Q ss_pred ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 97 ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.+++.+|+.+.++...+++||+|+++.+.. .+..+++.+.++|+|||++++
T Consensus 111 i~~~~gda~~~l~~~~~~~fD~V~~d~~~~------------------------~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 111 VRFLLSRPLDVMSRLANDSYQLVFGQVSPM------------------------DLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp EEEECSCHHHHGGGSCTTCEEEEEECCCTT------------------------THHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCHHHHHHHhcCCCcCeEEEcCcHH------------------------HHHHHHHHHHHHcCCCcEEEE
Confidence 389999998876554468999999975421 156789999999999999998
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-16 Score=127.66 Aligned_cols=129 Identities=12% Similarity=0.030 Sum_probs=94.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH------------------cCCcceEEEc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA------------------HNVHADLINT 102 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~------------------~~~~~~~~~~ 102 (256)
.++.+|||+|||+|..+..++.. +++|+|+|+|+.+++.|+++... .+.+.+++++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 140 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCC 140 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEEC
Confidence 36789999999999998888775 56999999999999999776431 1233489999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------
Q 025207 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------ 176 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------ 176 (256)
|+.+.... ..++||+|+++..+.+.+... ...++..+.++|||||++++++...
T Consensus 141 D~~~l~~~-~~~~FD~V~~~~~l~~l~~~~-------------------~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~ 200 (252)
T 2gb4_A 141 SIFDLPRA-NIGKFDRIWDRGALVAINPGD-------------------HDRYADIILSLLRKEFQYLVAVLSYDPTKHA 200 (252)
T ss_dssp CTTTGGGG-CCCCEEEEEESSSTTTSCGGG-------------------HHHHHHHHHHTEEEEEEEEEEEEECCTTSCC
T ss_pred ccccCCcc-cCCCEEEEEEhhhhhhCCHHH-------------------HHHHHHHHHHHcCCCeEEEEEEEecCCccCC
Confidence 99886432 127899999987776554322 5678999999999999997654221
Q ss_pred -----CCHHHHHHHHHHcCCcEEEE
Q 025207 177 -----NDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 177 -----~~~~~~~~~~~~~g~~~~~~ 196 (256)
-..+++.+++.. +|+....
T Consensus 201 g~~~~~~~~el~~~l~~-~f~v~~~ 224 (252)
T 2gb4_A 201 GPPFYVPSAELKRLFGT-KCSMQCL 224 (252)
T ss_dssp CSSCCCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCCCCCHHHHHHHhhC-CeEEEEE
Confidence 134677777765 4655443
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=8e-16 Score=125.17 Aligned_cols=131 Identities=18% Similarity=0.284 Sum_probs=103.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC------cceEEEcchhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV------HADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~~ 114 (256)
+++.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++++...++ ...+..+|+... ++.++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~ 100 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL--SFHDS 100 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC--CSCTT
T ss_pred CCCCeEEEECCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc--CCCCC
Confidence 47899999999999998887775 45999999999999999999887766 237888898765 23467
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------------------
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------ 176 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------ 176 (256)
+||+|+++..+.+.++. .....+++.+.++|+|||+++++....
T Consensus 101 ~~D~v~~~~~l~~~~~~------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (235)
T 3sm3_A 101 SFDFAVMQAFLTSVPDP------------------KERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPIT 162 (235)
T ss_dssp CEEEEEEESCGGGCCCH------------------HHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHH
T ss_pred ceeEEEEcchhhcCCCH------------------HHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccch
Confidence 89999998776655432 124588999999999999999975422
Q ss_pred ----------------------CCHHHHHHHHHHcCCcEEEEE
Q 025207 177 ----------------------NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 ----------------------~~~~~~~~~~~~~g~~~~~~~ 197 (256)
...+++.+++++.||+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 163 KEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp CSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEE
T ss_pred hhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEE
Confidence 246788899999999876554
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=127.61 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhccc-ccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEE
Q 025207 25 FALVDALLADRINL-VEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLIN 101 (256)
Q Consensus 25 ~~l~~~l~~~~~~~-~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~ 101 (256)
...++.+++.+... ...++.+|||+|||+|.++..+++.. +++++|+|+++.+++.|++++...++. .+++.
T Consensus 64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~ 138 (297)
T 2o57_A 64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-----GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 138 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE
Confidence 33445555554100 12578899999999999998888763 358999999999999999999888764 38999
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----
Q 025207 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---- 177 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---- 177 (256)
+|+.+. ++.+++||+|++...+.+.++ ...++.++.++|||||++++..+...
T Consensus 139 ~d~~~~--~~~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 195 (297)
T 2o57_A 139 GSFLEI--PCEDNSYDFIWSQDAFLHSPD---------------------KLKVFQECARVLKPRGVMAITDPMKEDGID 195 (297)
T ss_dssp CCTTSC--SSCTTCEEEEEEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEEEECTTCC
T ss_pred cCcccC--CCCCCCEeEEEecchhhhcCC---------------------HHHHHHHHHHHcCCCeEEEEEEeccCCCCc
Confidence 998775 334678999999765544332 46889999999999999999764221
Q ss_pred -----------------CHHHHHHHHHHcCCcEEEEEe
Q 025207 178 -----------------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 -----------------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...++.+.+.+.||....+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 233 (297)
T 2o57_A 196 KSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS 233 (297)
T ss_dssp GGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 344566778888887665543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=141.06 Aligned_cols=159 Identities=17% Similarity=0.213 Sum_probs=109.3
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccC---------CCceEEEEeCCHHHHHHH
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEV---------PGVQYIATDINPYAVEVT 86 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~---------~~~~v~giD~~~~~i~~a 86 (256)
.+|+|+. +++.+.+.+. ..++.+|||+|||+|.+++.+++.+.+.. ++..++|+|+++.+++.|
T Consensus 152 ~fyTP~~----v~~~mv~~l~---~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA 224 (445)
T 2okc_A 152 QYFTPRP----LIQAMVDCIN---PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA 224 (445)
T ss_dssp GGCCCHH----HHHHHHHHHC---CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred cccCcHH----HHHHHHHHhC---CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence 4678854 4444444432 24678999999999999999988764321 235799999999999999
Q ss_pred HHHHHHcCCc---ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 87 RKTLEAHNVH---ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 87 ~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+.|+..+++. ..+.++|...... ..+||+|++||||................+ .... ....+++.+.++|
T Consensus 225 ~~nl~l~g~~~~~~~i~~gD~l~~~~---~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~-~~~~---~~~~fl~~~~~~L 297 (445)
T 2okc_A 225 SMNLYLHGIGTDRSPIVCEDSLEKEP---STLVDVILANPPFGTRPAGSVDINRPDFYV-ETKN---NQLNFLQHMMLML 297 (445)
T ss_dssp HHHHHHTTCCSSCCSEEECCTTTSCC---SSCEEEEEECCCSSCCCTTCCCCCCTTSSS-CCSC---HHHHHHHHHHHHE
T ss_pred HHHHHHhCCCcCCCCEeeCCCCCCcc---cCCcCEEEECCCCCCcccccchhhHhhcCC-CCcc---hHHHHHHHHHHHh
Confidence 9999998883 4899999876532 248999999999987655322100001111 1111 1347889999999
Q ss_pred ccCeEEEEEEeCC-----CCHHHHHHHHHH
Q 025207 164 SKRGWLYLVTLTA-----NDPSQICLQMME 188 (256)
Q Consensus 164 kpgG~l~~~~~~~-----~~~~~~~~~~~~ 188 (256)
||||+++++.+.. .....+++.+.+
T Consensus 298 k~gG~~a~V~p~~~L~~~~~~~~iR~~L~~ 327 (445)
T 2okc_A 298 KTGGRAAVVLPDNVLFEAGAGETIRKRLLQ 327 (445)
T ss_dssp EEEEEEEEEEEHHHHHCSTHHHHHHHHHHH
T ss_pred ccCCEEEEEECCcccccCcHHHHHHHHHHh
Confidence 9999999988642 123456665543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=129.29 Aligned_cols=129 Identities=11% Similarity=0.127 Sum_probs=101.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++.. +++|+|+|+++.+++.|++++..+++. .+++.+|+.+. ++.+++||+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~ 188 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF-----GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT--PFDKGAVTA 188 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CCCTTCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC--CCCCCCEeE
Confidence 578899999999999998888763 468999999999999999999998876 48999999875 234589999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------- 177 (256)
|+++..+.+.. ...+++.+.++|||||+++++++...
T Consensus 189 V~~~~~l~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 3vc1_A 189 SWNNESTMYVD----------------------LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNI 246 (312)
T ss_dssp EEEESCGGGSC----------------------HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCC
T ss_pred EEECCchhhCC----------------------HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCC
Confidence 99975543221 57889999999999999999774322
Q ss_pred -CHHHHHHHHHHcCCcEEEEEe
Q 025207 178 -DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 -~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...++.+.+++.||+...+..
T Consensus 247 ~s~~~~~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 247 HSRREYLRAMADNRLVPHTIVD 268 (312)
T ss_dssp CBHHHHHHHHHTTTEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEEEe
Confidence 234567777777877655443
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=129.24 Aligned_cols=112 Identities=13% Similarity=-0.008 Sum_probs=88.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||||||+|..+..+++. .+ .+++++|+++.+++.|+++....+....++.+|+.+....+.+++||.|+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~----~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~ 133 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEA----PI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTS----CE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHh----CC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEE
Confidence 57899999999999986655543 34 48999999999999999998877777789999998877777778999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.++....... ........+++++.++|||||++++..
T Consensus 134 ~D~~~~~~~~----------------~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 134 YDTYPLSEET----------------WHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp ECCCCCBGGG----------------TTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred Eeeeecccch----------------hhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 8764321111 012346788999999999999998843
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-16 Score=125.68 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=105.3
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025207 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
...|++++..+++.++.... .++.+|||+|||+|.++..++.. +++|+|+|+++.+++.++++ ...
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~----~~~ 92 (226)
T 3m33_A 27 RVLSGPDPELTFDLWLSRLL----TPQTRVLEAGCGHGPDAARFGPQ------AARWAAYDFSPELLKLARAN----APH 92 (226)
T ss_dssp CEESSSCTTHHHHHHHHHHC----CTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHH----CTT
T ss_pred cccCCCCHHHHHHHHHHhcC----CCCCeEEEeCCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHh----CCC
Confidence 44567777777777766542 47899999999999987776654 46999999999999999987 223
Q ss_pred ceEEEcchhhchhhhc-CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 97 ADLINTDIASGLEKRL-AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~-~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.+++++|+.+..+ +. +++||+|++++. ...++..+.++|||||+++. ...
T Consensus 93 ~~~~~~d~~~~~~-~~~~~~fD~v~~~~~---------------------------~~~~l~~~~~~LkpgG~l~~-~~~ 143 (226)
T 3m33_A 93 ADVYEWNGKGELP-AGLGAPFGLIVSRRG---------------------------PTSVILRLPELAAPDAHFLY-VGP 143 (226)
T ss_dssp SEEEECCSCSSCC-TTCCCCEEEEEEESC---------------------------CSGGGGGHHHHEEEEEEEEE-EES
T ss_pred ceEEEcchhhccC-CcCCCCEEEEEeCCC---------------------------HHHHHHHHHHHcCCCcEEEE-eCC
Confidence 4899999865433 33 679999999731 24668889999999999994 334
Q ss_pred CCCHHHHHHHHHHcCCcEEEEE
Q 025207 176 ANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 176 ~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.....++...+.+.||....+.
T Consensus 144 ~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 144 RLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp SSCCTHHHHHHHHTTCEEEEEE
T ss_pred cCCHHHHHHHHHHCCCeEEEEE
Confidence 4456788999999999865544
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=122.08 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=97.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++ .+.. .+++.+|+.+. ..+++||+|
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~---~~~~~~D~v 111 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGL------ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW---TPDRQWDAV 111 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC---CCSSCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC---CCCCceeEE
Confidence 46689999999999998888776 4599999999999999987 4433 48999999876 235899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
+++..+.+.+++ ....+++.+.++|+|||+++++....
T Consensus 112 ~~~~~l~~~~~~-------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (218)
T 3ou2_A 112 FFAHWLAHVPDD-------------------RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQD 172 (218)
T ss_dssp EEESCGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTT
T ss_pred EEechhhcCCHH-------------------HHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCC
Confidence 997655443321 25788999999999999999976522
Q ss_pred ----------CCHHHHHHHHHHcCCcEEEEE
Q 025207 177 ----------NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 ----------~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++.+++++.||++....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 203 (218)
T 3ou2_A 173 GRSFRIVKVFRSPAELTERLTALGWSCSVDE 203 (218)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cchhhHhhcCCCHHHHHHHHHHCCCEEEeee
Confidence 144678888888898854433
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-16 Score=126.70 Aligned_cols=129 Identities=18% Similarity=0.172 Sum_probs=101.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++.+|||+|||+|.++..++. ++.+|+|+|+++.+++.|++++...+. ..+++.+|+.+... +++||+|
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v 136 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMAS------PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP---TELFDLI 136 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCB------TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC---SSCEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHh------CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC---CCCeeEE
Confidence 456999999999998765543 367899999999999999999876432 23899999988542 4689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------CCHHHHHHHHHHc
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------NDPSQICLQMMEK 189 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~~~~~~~~~ 189 (256)
+++..+.+.+... ...+++.+.++|+|||+++++.... ....++...+.+.
T Consensus 137 ~~~~~l~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 197 (235)
T 3lcc_A 137 FDYVFFCAIEPEM-------------------RPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPI 197 (235)
T ss_dssp EEESSTTTSCGGG-------------------HHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGG
T ss_pred EEChhhhcCCHHH-------------------HHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHc
Confidence 9987776554322 5788999999999999999866432 1357899999999
Q ss_pred CCcEEEEEe
Q 025207 190 GYAARIVVQ 198 (256)
Q Consensus 190 g~~~~~~~~ 198 (256)
||+...+..
T Consensus 198 Gf~~~~~~~ 206 (235)
T 3lcc_A 198 GFKAVSVEE 206 (235)
T ss_dssp TEEEEEEEE
T ss_pred CCeEEEEEe
Confidence 998876654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-15 Score=133.21 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=105.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..+..++..+. ..+.|+|+|+++.+++.+++|+..+++.. .++++|+.+....+.+++||+|
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~V 334 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMK---NKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKV 334 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTT---TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcC---CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEE
Confidence 5788999999999999999988742 12699999999999999999999998854 8899998776432333689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHH----HHHHHHHHHhhccccCeEEEEEEeCCCC---HHHHHHHHHHc-CC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRA----VIDKILPSADKLLSKRGWLYLVTLTAND---PSQICLQMMEK-GY 191 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~-g~ 191 (256)
++|||+..... ..+.++..|........ ....++..+.++|||||++++++++... ...+...+.++ +|
T Consensus 335 l~D~Pcsg~g~---~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~ 411 (450)
T 2yxl_A 335 LLDAPCTSSGT---IGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEF 411 (450)
T ss_dssp EEECCCCCGGG---TTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSC
T ss_pred EEcCCCCCCee---eccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCC
Confidence 99999854321 11222222322212111 2357899999999999999998876652 23456666665 56
Q ss_pred cE
Q 025207 192 AA 193 (256)
Q Consensus 192 ~~ 193 (256)
..
T Consensus 412 ~~ 413 (450)
T 2yxl_A 412 KL 413 (450)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-15 Score=123.15 Aligned_cols=136 Identities=16% Similarity=0.223 Sum_probs=103.9
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+.+.+...+ .++.+|||+|||+|.++..++.. +++++|+|+++.+++.++++. ......++.+|+.
T Consensus 42 ~~~~~l~~~~-----~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~d~~ 108 (242)
T 3l8d_A 42 TIIPFFEQYV-----KKEAEVLDVGCGDGYGTYKLSRT------GYKAVGVDISEVMIQKGKERG--EGPDLSFIKGDLS 108 (242)
T ss_dssp THHHHHHHHS-----CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHTTT--CBTTEEEEECBTT
T ss_pred HHHHHHHHHc-----CCCCeEEEEcCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhc--ccCCceEEEcchh
Confidence 3445555543 36789999999999998877775 458999999999999998864 2223489999988
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-------- 177 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------- 177 (256)
+.. +.+++||+|+++..+.+.++ ...++..+.++|+|||++++......
T Consensus 109 ~~~--~~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 165 (242)
T 3l8d_A 109 SLP--FENEQFEAIMAINSLEWTEE---------------------PLRALNEIKRVLKSDGYACIAILGPTAKPRENSY 165 (242)
T ss_dssp BCS--SCTTCEEEEEEESCTTSSSC---------------------HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGG
T ss_pred cCC--CCCCCccEEEEcChHhhccC---------------------HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhh
Confidence 752 34689999999877665433 46889999999999999999774321
Q ss_pred -------------CHHHHHHHHHHcCCcEEEEE
Q 025207 178 -------------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 -------------~~~~~~~~~~~~g~~~~~~~ 197 (256)
...++...+++.||+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 166 PRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp GGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 34578899999999876544
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=123.03 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=85.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. + .+++|+|+++.+++.+++++..++... .++.+|+.+. ++.+++||+|
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v 91 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPY----V--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL--PFPDDSFDII 91 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG----S--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC--CSCTTCEEEE
T ss_pred CCCCEEEEEccCcCHHHHHHHHh----C--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC--CCCCCcEEEE
Confidence 57899999999999988776654 3 389999999999999999998887654 8899998764 3345789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++..+.+.++ ...++.++.++|||||+++++..
T Consensus 92 ~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 92 TCRYAAHHFSD---------------------VRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp EEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCchhhccC---------------------HHHHHHHHHHHcCCCcEEEEEEc
Confidence 99765443322 46889999999999999999764
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-16 Score=136.87 Aligned_cols=179 Identities=18% Similarity=0.219 Sum_probs=116.7
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...+|+| ..+++.+.+.+.. .++.+|||+|||+|.+++.+++... ++.+++|+|+++.+++.|
T Consensus 18 ~g~~~TP----~~l~~~~~~~~~~---~~~~~vLD~gcGtG~~~~~~~~~~~---~~~~i~gvDi~~~~~~~a------- 80 (421)
T 2ih2_A 18 LGRVETP----PEVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHG---TAYRFVGVEIDPKALDLP------- 80 (421)
T ss_dssp ---CCCC----HHHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHC---SCSEEEEEESCTTTCCCC-------
T ss_pred CceEeCC----HHHHHHHHHhhcc---CCCCEEEECCCCChHHHHHHHHHhC---CCCeEEEEECCHHHHHhC-------
Confidence 3457777 5566666665531 3567999999999999998887642 456999999999999877
Q ss_pred CCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCccc----ccccchh------hhcCCCCcHHHHHHHHHHHhhcc
Q 025207 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV----GREGIAS------AWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 94 ~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~----~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
...+++++|+.+... .++||+|++||||........ ...+... ....+. .+....+++.+.++|
T Consensus 81 -~~~~~~~~D~~~~~~---~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fl~~~~~~L 154 (421)
T 2ih2_A 81 -PWAEGILADFLLWEP---GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGK--YNLYGAFLEKAVRLL 154 (421)
T ss_dssp -TTEEEEESCGGGCCC---SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTT--CCHHHHHHHHHHHHE
T ss_pred -CCCcEEeCChhhcCc---cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCC--ccHHHHHHHHHHHHh
Confidence 134899999887532 368999999999987554210 0000000 111111 234668899999999
Q ss_pred ccCeEEEEEEeCC----CCHHHHHHHHHHcCCcEEEEEecC--CCCccEEEEEEEecC
Q 025207 164 SKRGWLYLVTLTA----NDPSQICLQMMEKGYAARIVVQRS--TEEENLHIIKFWRDF 215 (256)
Q Consensus 164 kpgG~l~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~l~~~~~~~ 215 (256)
+|||+++++.+.. .....+++.+.+.++......... .......++.+.++.
T Consensus 155 k~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i~~l~~~F~~~~~~~~il~~~k~~ 212 (421)
T 2ih2_A 155 KPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRFQKSG 212 (421)
T ss_dssp EEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEEESCSTTCCCCEEEEEEESSS
T ss_pred CCCCEEEEEEChHHhcCccHHHHHHHHHhcCCeEEEECCCCCCCCCccEEEEEEEeCC
Confidence 9999999988753 235678888888776322222221 223445566666543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=119.03 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=97.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++++..++.+ .+++.+|+.+.. . +++||+|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~-~~~~D~v 101 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAAN------GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT--F-DRQYDFI 101 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC--C-CCCEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC--C-CCCceEE
Confidence 36789999999999998877765 459999999999999999999888774 489999987753 2 5789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------------CCHHHHHHHH
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-------------NDPSQICLQM 186 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------~~~~~~~~~~ 186 (256)
+++.++.+.+... ...++..+.++|+|||+++++.... -..+++.+.+
T Consensus 102 ~~~~~l~~~~~~~-------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (199)
T 2xvm_A 102 LSTVVLMFLEAKT-------------------IPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYY 162 (199)
T ss_dssp EEESCGGGSCGGG-------------------HHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHT
T ss_pred EEcchhhhCCHHH-------------------HHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHh
Confidence 9987765543221 5788999999999999988765321 1345777777
Q ss_pred HHcCCcEEEE
Q 025207 187 MEKGYAARIV 196 (256)
Q Consensus 187 ~~~g~~~~~~ 196 (256)
.. |+....
T Consensus 163 ~~--f~~~~~ 170 (199)
T 2xvm_A 163 EG--WERVKY 170 (199)
T ss_dssp TT--SEEEEE
T ss_pred cC--CeEEEe
Confidence 65 665444
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=122.28 Aligned_cols=124 Identities=18% Similarity=0.250 Sum_probs=94.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcC----CC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLA----GL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~----~~ 115 (256)
++.+|||+|||+|..++.+++.+. ++++|+++|+++.+++.|++++..+++. .+++.+|+.+.++.... ++
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 134 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQ---PGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 134 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSC---TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCC---CCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence 678999999999999988887532 3679999999999999999999999886 38999998776554322 68
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
||+|+++.+... ......++..+ ++|+|||++++.........+..+.+.+..
T Consensus 135 fD~V~~d~~~~~---------------------~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~ 187 (221)
T 3u81_A 135 LDMVFLDHWKDR---------------------YLPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSS 187 (221)
T ss_dssp CSEEEECSCGGG---------------------HHHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCT
T ss_pred eEEEEEcCCccc---------------------chHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCC
Confidence 999999754211 11133566667 999999999985554444566677776654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=130.93 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=99.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+| |+|.+++.++.. +++.+|+|+|+++.+++.|++|+..+++. .+++.+|+.+.++...+++||+|
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~----~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~V 245 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLS----GLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTF 245 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHH----TCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEE
Confidence 3678999999 999999888776 56569999999999999999999998874 58999999884432224689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE-EEEEeC-CCCH---HHHHHHHH-HcCCcE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL-YLVTLT-ANDP---SQICLQMM-EKGYAA 193 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l-~~~~~~-~~~~---~~~~~~~~-~~g~~~ 193 (256)
++||||... ....++..+.++|+|||++ ++.... .... .++.+.+. +.|+..
T Consensus 246 i~~~p~~~~----------------------~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 303 (373)
T 2qm3_A 246 ITDPPETLE----------------------AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI 303 (373)
T ss_dssp EECCCSSHH----------------------HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred EECCCCchH----------------------HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence 999998521 1368899999999999954 554443 1334 56667776 778766
Q ss_pred EEEE
Q 025207 194 RIVV 197 (256)
Q Consensus 194 ~~~~ 197 (256)
..+.
T Consensus 304 ~~~~ 307 (373)
T 2qm3_A 304 TDII 307 (373)
T ss_dssp EEEE
T ss_pred hhhh
Confidence 5444
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=127.74 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----cceEE
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----HADLI 100 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----~~~~~ 100 (256)
...+..+++.+. .++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|++++...+. ..+++
T Consensus 69 ~~~~~~~~~~~~----~~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~ 138 (299)
T 3g2m_A 69 TSEAREFATRTG----PVSGPVLELAAGMGRLTFPFLDL------GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLV 138 (299)
T ss_dssp HHHHHHHHHHHC----CCCSCEEEETCTTTTTHHHHHTT------TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEE
T ss_pred cHHHHHHHHhhC----CCCCcEEEEeccCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHhhcccccccceEEE
Confidence 334445555543 34569999999999988777664 46899999999999999999887663 35899
Q ss_pred EcchhhchhhhcCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 101 NTDIASGLEKRLAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
++|+.+... +++||+|++.. .+...+ ......+++.+.++|+|||++++..+.
T Consensus 139 ~~d~~~~~~---~~~fD~v~~~~~~~~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 139 QGDMSAFAL---DKRFGTVVISSGSINELD-------------------EADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp ECBTTBCCC---SCCEEEEEECHHHHTTSC-------------------HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eCchhcCCc---CCCcCEEEECCcccccCC-------------------HHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 999987532 58899998742 111111 123578899999999999999997643
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=127.27 Aligned_cols=166 Identities=11% Similarity=0.061 Sum_probs=108.0
Q ss_pred HHHHHHHhhccc---ccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--------
Q 025207 27 LVDALLADRINL---VEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-------- 95 (256)
Q Consensus 27 l~~~l~~~~~~~---~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-------- 95 (256)
+.++++..+..+ ...++.+|||+|||+|.+++.++.. +. .+|+|+|+|+.|++.|++++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~----~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~ 111 (263)
T 2a14_A 37 MLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACD----SF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAV 111 (263)
T ss_dssp HHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGG----TE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHh----hh-cceeeccccHHHHHHHHHHHhcCCCcccchHHH
Confidence 456665555433 2357789999999999865433322 11 2699999999999999987754320
Q ss_pred ----------------------cc-eEEEcchhhchh--hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHH
Q 025207 96 ----------------------HA-DLINTDIASGLE--KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRA 150 (256)
Q Consensus 96 ----------------------~~-~~~~~d~~~~~~--~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (256)
.. +++.+|+.+..+ +...++||+|+++..+.+... ...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~-----------------~~~ 174 (263)
T 2a14_A 112 KFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC-----------------SLD 174 (263)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS-----------------SHH
T ss_pred HHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcC-----------------CHH
Confidence 01 278888877422 112468999999754321100 012
Q ss_pred HHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHHHHHcCCcEEEEEecC-------CCCccEEE
Q 025207 151 VIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQMMEKGYAARIVVQRS-------TEEENLHI 208 (256)
Q Consensus 151 ~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~l 208 (256)
.+..++.++.++|||||+++++.... -..+++.+.+.+.||....+.... .....+++
T Consensus 175 ~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~ 254 (263)
T 2a14_A 175 AYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCC 254 (263)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEE
Confidence 35688999999999999999976321 146688999999999876554321 11234556
Q ss_pred EEEEec
Q 025207 209 IKFWRD 214 (256)
Q Consensus 209 ~~~~~~ 214 (256)
+.+.|.
T Consensus 255 ~~a~K~ 260 (263)
T 2a14_A 255 IVARKK 260 (263)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 666553
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=131.25 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=94.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++. ++ ...+|+|+|+++.+++.|++|+..+++. .+++++|+.+.. ++||+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~------~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----~~fD~ 261 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK------NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----VKGNR 261 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT------TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----CCEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----CCCcE
Confidence 3689999999999999877 54 2468999999999999999999999984 489999998864 68999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc-CCcE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK-GYAA 193 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-g~~~ 193 (256)
|++|||++ ...++..+.++|+|||++++.+.... .....+.+.+. +++.
T Consensus 262 Vi~dpP~~-------------------------~~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~~~~~~i 311 (336)
T 2yx1_A 262 VIMNLPKF-------------------------AHKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFEKKCDCEV 311 (336)
T ss_dssp EEECCTTT-------------------------GGGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHHHHSEEEE
T ss_pred EEECCcHh-------------------------HHHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHHHhcCCcE
Confidence 99999975 13568888899999999999776665 55666677766 5553
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=134.11 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=95.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhh--cCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKR--LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~--~~~~f 116 (256)
+++.+|||+|||+|.+++.++.. +..+|+|+|+++.+++.|++|+..+++. .+++.+|+.+..... ..++|
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-----g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~f 290 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-----GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 290 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCC
Confidence 36799999999999999988874 2348999999999999999999999985 389999998875432 24689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
|+|++|||++..+..... .....+..++..+.++|+|||++++++++...
T Consensus 291 D~Vi~dpP~~~~~~~~~~------------~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 340 (396)
T 2as0_A 291 DIVVLDPPAFVQHEKDLK------------AGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV 340 (396)
T ss_dssp EEEEECCCCSCSSGGGHH------------HHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred CEEEECCCCCCCCHHHHH------------HHHHHHHHHHHHHHHhcCCCcEEEEEECCCCC
Confidence 999999998765432110 01234678899999999999999998876543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=127.06 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=89.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|++++..+++..+++.+|+.+... +++||+|+
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~------g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~i~ 189 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL------GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI---QENYDFIV 189 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC---CSCEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc---cCCccEEE
Confidence 37899999999999998887775 4599999999999999999999988866999999987533 57899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++.++.+.+... ...++..+.++|+|||+++++..
T Consensus 190 ~~~~~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 190 STVVFMFLNRER-------------------VPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp ECSSGGGSCGGG-------------------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EccchhhCCHHH-------------------HHHHHHHHHHhcCCCcEEEEEEe
Confidence 998876554332 57889999999999999887654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=125.77 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=101.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCc-ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVH-ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~-~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++..+ +|+.+++++|+++.+++.|++++..+ +.. .+++.+|+.+. ++.+++||+
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~~D~ 169 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAV---GEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAAYDG 169 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTCEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCCcCE
Confidence 578899999999999998888865 35679999999999999999999887 744 38999998776 223468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|++++|- ...++..+.++|+|||+++++.+......++...+.+.||......
T Consensus 170 v~~~~~~--------------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 222 (258)
T 2pwy_A 170 VALDLME--------------------------PWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVL 222 (258)
T ss_dssp EEEESSC--------------------------GGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEE
T ss_pred EEECCcC--------------------------HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEE
Confidence 9998762 2366889999999999999988765556677778888888765444
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-15 Score=123.80 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=85.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++.. +++|+|+|+++.+++.+++++...++. .+++.+|+.+. +++||+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~ 132 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKY-----DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-----DEPVDR 132 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-----CCCCSE
T ss_pred CCcCEEEEECCcccHHHHHHHHHc-----CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-----CCCeeE
Confidence 578899999999999998888652 349999999999999999999877764 38889998654 278999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
|++...+.+.+... ...+++.+.++|||||++++..+.
T Consensus 133 v~~~~~l~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 133 IVSIGAFEHFGHER-------------------YDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp EEEESCGGGTCTTT-------------------HHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred EEEeCchhhcChHH-------------------HHHHHHHHHHhcCCCCEEEEEEec
Confidence 99976654443211 578899999999999999997653
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-16 Score=134.46 Aligned_cols=149 Identities=12% Similarity=0.132 Sum_probs=103.9
Q ss_pred eeccC-CccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 11 VSSHP-EVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~-~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.| .++++.+. ++.+++++++.+. ..+.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.|++
T Consensus 184 ~~~~~~~F~Q~n~~~~~~l~~~~~~~~~----~~~~~vLDl~cG~G~~~l~la~~------~~~V~gvd~~~~ai~~a~~ 253 (369)
T 3bt7_A 184 YRQVENSFTQPNAAMNIQMLEWALDVTK----GSKGDLLELYCGNGNFSLALARN------FDRVLATEIAKPSVAAAQY 253 (369)
T ss_dssp EEEETTSCCCSBHHHHHHHHHHHHHHTT----TCCSEEEEESCTTSHHHHHHGGG------SSEEEEECCCHHHHHHHHH
T ss_pred EEECCCCeecCCHHHHHHHHHHHHHHhh----cCCCEEEEccCCCCHHHHHHHhc------CCEEEEEECCHHHHHHHHH
Confidence 33444 55666655 5778888887763 23678999999999999877764 2489999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcC--------------CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHH
Q 025207 89 TLEAHNVHA-DLINTDIASGLEKRLA--------------GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVID 153 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~--------------~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
|+..+++++ +++.+|+.+....... .+||+|++|||+..
T Consensus 254 n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g-------------------------- 307 (369)
T 3bt7_A 254 NIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG-------------------------- 307 (369)
T ss_dssp HHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC--------------------------
T ss_pred HHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc--------------------------
Confidence 999999865 8999999887543322 37999999999741
Q ss_pred HHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 154 KILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 154 ~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
+...+.+.|+++|++++++++......-...+.. +|....+.
T Consensus 308 -~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~~-~y~~~~~~ 349 (369)
T 3bt7_A 308 -LDSETEKMVQAYPRILYISCNPETLCKNLETLSQ-THKVERLA 349 (369)
T ss_dssp -CCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH-HEEEEEEE
T ss_pred -cHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhh-CcEEEEEE
Confidence 1223445566888888877644332222223332 45554443
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.1e-15 Score=127.83 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=97.8
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-------------------------------
Q 025207 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP------------------------------- 69 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~------------------------------- 69 (256)
.+..+.++..++..... .++..+||++||+|.++++++.+.....|
T Consensus 176 Apl~e~LAaall~l~~~---~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~ 252 (384)
T 3ldg_A 176 APIKENMAAAIILLSNW---FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQAD 252 (384)
T ss_dssp CCCCHHHHHHHHHHTTC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCC
T ss_pred CCCcHHHHHHHHHHhCC---CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhh
Confidence 33467788877765432 46789999999999999999987654222
Q ss_pred ---CceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcC
Q 025207 70 ---GVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAG 144 (256)
Q Consensus 70 ---~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~ 144 (256)
...|+|+|+++.+++.|++|+..+++.. +++++|+.+... ..+||+|++||||...-..+
T Consensus 253 ~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~---~~~fD~Iv~NPPYG~rl~~~------------ 317 (384)
T 3ldg_A 253 YDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT---NKINGVLISNPPYGERLLDD------------ 317 (384)
T ss_dssp TTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC---CCCSCEEEECCCCTTTTSCH------------
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc---cCCcCEEEECCchhhccCCH------------
Confidence 2469999999999999999999999864 899999988643 25899999999997543211
Q ss_pred CCCcHHHHHHHHHHHhhcccc--CeEEEEEEeC
Q 025207 145 GENGRAVIDKILPSADKLLSK--RGWLYLVTLT 175 (256)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~Lkp--gG~l~~~~~~ 175 (256)
..+..+...+.+.||+ ||.++++++.
T Consensus 318 -----~~l~~ly~~lg~~lk~~~g~~~~iit~~ 345 (384)
T 3ldg_A 318 -----KAVDILYNEMGETFAPLKTWSQFILTND 345 (384)
T ss_dssp -----HHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred -----HHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 1233444444455554 9999998763
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-14 Score=117.06 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=91.4
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+++.++..+..+...++.+|||+|||+|.+++.++..++ ++.+|+|+|+++.+++.+++++..+ ....++.+|
T Consensus 55 ~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~---~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d 130 (227)
T 1g8a_A 55 RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVG---WEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGD 130 (227)
T ss_dssp TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHC---TTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECC
T ss_pred chhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhC---CCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEcc
Confidence 345556665544433345788999999999999999887752 4569999999999999999988655 234889999
Q ss_pred hhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 104 IASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 104 ~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.+... ....++||+|++++|.. . ....++..+.++|||||++++...
T Consensus 131 ~~~~~~~~~~~~~~D~v~~~~~~~---~--------------------~~~~~l~~~~~~LkpgG~l~~~~~ 179 (227)
T 1g8a_A 131 ATKPEEYRALVPKVDVIFEDVAQP---T--------------------QAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp TTCGGGGTTTCCCEEEEEECCCST---T--------------------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcchhhcccCCceEEEECCCCH---h--------------------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 877421 11246899999987721 0 134558999999999999998743
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=136.95 Aligned_cols=173 Identities=18% Similarity=0.180 Sum_probs=120.7
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...+|+|+..+.++++.+..... +.++.+|+|+|||+|.+++.+++.+.. .....++|+|+++.+++.|+.|+..+
T Consensus 196 ~G~fyTP~~Vv~lmv~ll~~~~~---~~~~~~VlDPaCGSG~fLi~a~~~l~~-~~~~~i~G~Eid~~~~~lA~~Nl~l~ 271 (542)
T 3lkd_A 196 AGEFYTPQPVAKLMTQIAFLGRE---DKQGFTLYDATMGSGSLLLNAKRYSRQ-PQTVVYFGQELNTSTYNLARMNMILH 271 (542)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTCT---TCTTCEEEETTCTTSTTGGGHHHHCSC-TTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred CCeecccHHHHHHHHHHHhcccC---CCCCCEEeecccchhHHHHHHHHHHHh-ccCceEEEEECcHHHHHHHHHHHHHc
Confidence 35689998777777776654321 146789999999999999988887653 23568999999999999999999999
Q ss_pred CCc--c-eEEEcchhhch-hhhcCCCccEEEECCCCCCCCCcccc-cccchhhhcC----CCCcHHHHHHHHHHHhhccc
Q 025207 94 NVH--A-DLINTDIASGL-EKRLAGLVDVMVVNPPYVPTPEDEVG-REGIASAWAG----GENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 94 ~~~--~-~~~~~d~~~~~-~~~~~~~fD~Ii~npP~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~l~~~~~~Lk 164 (256)
++. . .+.++|..... +.....+||+|++||||......... .........+ .... -..++..+.+.|+
T Consensus 272 gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~---~~~Fl~~~l~~Lk 348 (542)
T 3lkd_A 272 GVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKA---DFAFLLHGYYHLK 348 (542)
T ss_dssp TCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCC---HHHHHHHHHHTBC
T ss_pred CCCcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchh---hHHHHHHHHHHhC
Confidence 984 2 78999987642 22235789999999999854322211 1111111111 1111 1257889999999
Q ss_pred -cCeEEEEEEeCCC----C-HHHHHHHHHHcCCcE
Q 025207 165 -KRGWLYLVTLTAN----D-PSQICLQMMEKGYAA 193 (256)
Q Consensus 165 -pgG~l~~~~~~~~----~-~~~~~~~~~~~g~~~ 193 (256)
+||++.++.+..- . ...+++.+.+.+.-.
T Consensus 349 ~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~l~ 383 (542)
T 3lkd_A 349 QDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGAID 383 (542)
T ss_dssp TTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTCEE
T ss_pred CCceeEEEEecchHhhCCchhHHHHHHHHhCCcee
Confidence 9999999887531 2 356788887776533
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=128.48 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CCcceEE
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NVHADLI 100 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~~~~~~ 100 (256)
...+++.+..... .++.+|||+|||+|.++..+++.+. ++.+|+|+|+++.+++.|++++... ....+++
T Consensus 22 ~~~~~~~l~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~ 94 (299)
T 3g5t_A 22 PSDFYKMIDEYHD----GERKLLVDVGCGPGTATLQMAQELK---PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFK 94 (299)
T ss_dssp CHHHHHHHHHHCC----SCCSEEEEETCTTTHHHHHHHHHSS---CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEE
T ss_pred CHHHHHHHHHHhc----CCCCEEEEECCCCCHHHHHHHHhCC---CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEE
Confidence 3456666666542 4789999999999999988887631 5779999999999999999999876 3344899
Q ss_pred EcchhhchhhhcC------CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 101 NTDIASGLEKRLA------GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 101 ~~d~~~~~~~~~~------~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++|+.+.. +.+ ++||+|+++..+++. + ...++.++.++|+|||++++..
T Consensus 95 ~~d~~~~~--~~~~~~~~~~~fD~V~~~~~l~~~-~---------------------~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 95 ISSSDDFK--FLGADSVDKQKIDMITAVECAHWF-D---------------------FEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp ECCTTCCG--GGCTTTTTSSCEEEEEEESCGGGS-C---------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCHHhCC--ccccccccCCCeeEEeHhhHHHHh-C---------------------HHHHHHHHHHhcCCCcEEEEEe
Confidence 99998753 223 789999997665433 1 5788999999999999998833
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=140.57 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=104.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhcCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++++|||+|||+|.+++.++.. + ..+|+++|+|+.+++.|++|+..|++. .+++++|+.+.+.. ..++||+
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~----g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~-~~~~fD~ 612 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG----G-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE-ANEQFDL 612 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH-CCCCEEE
T ss_pred CCCcEEEeeechhHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh-cCCCccE
Confidence 6899999999999999888764 2 236999999999999999999999986 38999999987544 3578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|++|||++........ .......+..++..+.++|+|||+++++++..... .-...+.+.|++...+.
T Consensus 613 Ii~DPP~f~~~~~~~~----------~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~-~~~~~l~~~g~~~~~i~ 680 (703)
T 3v97_A 613 IFIDPPTFSNSKRMED----------AFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFR-MDLDGLAKLGLKAQEIT 680 (703)
T ss_dssp EEECCCSBC-----------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCC-CCHHHHHHTTEEEEECT
T ss_pred EEECCccccCCccchh----------HHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-cCHHHHHHcCCceeeee
Confidence 9999999754432110 01223457889999999999999999877653322 22566777787644443
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-15 Score=123.89 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=100.9
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-CHHHHHHHHHHH-----HHcCC
Q 025207 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-NPYAVEVTRKTL-----EAHNV 95 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~-~~~~i~~a~~~~-----~~~~~ 95 (256)
+.++.+++++..... ..++.+|||+|||+|.+++.+++. + ..+|+|+|+ ++.+++.|++|+ ..+++
T Consensus 62 ~~~~~l~~~l~~~~~---~~~~~~vLDlG~G~G~~~~~~a~~----~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~ 133 (281)
T 3bzb_A 62 SGARALADTLCWQPE---LIAGKTVCELGAGAGLVSIVAFLA----G-ADQVVATDYPDPEILNSLESNIREHTANSCSS 133 (281)
T ss_dssp CHHHHHHHHHHHCGG---GTTTCEEEETTCTTSHHHHHHHHT----T-CSEEEEEECSCHHHHHHHHHHHHTTCC-----
T ss_pred cHHHHHHHHHHhcch---hcCCCeEEEecccccHHHHHHHHc----C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhccc
Confidence 347788888877643 246789999999999999887765 2 238999999 899999999999 44554
Q ss_pred c------ceEEEcchhhchhhh----cCCCccEEEE-CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 96 H------ADLINTDIASGLEKR----LAGLVDVMVV-NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 96 ~------~~~~~~d~~~~~~~~----~~~~fD~Ii~-npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
. ..+...++.+..... ..++||+|++ +..|+ .+ ....++..+.++|+
T Consensus 134 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~-~~---------------------~~~~ll~~l~~~Lk 191 (281)
T 3bzb_A 134 ETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF-HQ---------------------AHDALLRSVKMLLA 191 (281)
T ss_dssp -----CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC-GG---------------------GHHHHHHHHHHHBC
T ss_pred ccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccC-hH---------------------HHHHHHHHHHHHhc
Confidence 3 356655544432221 2578999998 55543 11 15788999999999
Q ss_pred ---c--CeEEEEEEeCCC-----CHHHHHHHHHHcC-CcEEEEE
Q 025207 165 ---K--RGWLYLVTLTAN-----DPSQICLQMMEKG-YAARIVV 197 (256)
Q Consensus 165 ---p--gG~l~~~~~~~~-----~~~~~~~~~~~~g-~~~~~~~ 197 (256)
| ||+++++....+ ....+...+.+.| |....+.
T Consensus 192 ~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 192 LPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp CTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEE
T ss_pred ccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEec
Confidence 9 999887654432 1346677888899 8877664
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-15 Score=125.35 Aligned_cols=133 Identities=11% Similarity=0.129 Sum_probs=95.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceE--EEEeCCHHHHHHHHHHHHHc-CCcc---eEEEcchhhchh----h
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQY--IATDINPYAVEVTRKTLEAH-NVHA---DLINTDIASGLE----K 110 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v--~giD~~~~~i~~a~~~~~~~-~~~~---~~~~~d~~~~~~----~ 110 (256)
.++.+|||+|||+|.++..++..+..+++++.+ +|+|+|++|++.|++++... ++.. .+..+++.+... +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 466899999999998877666555444566655 99999999999999988653 3332 445666654321 1
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-------------
Q 025207 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------------- 177 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------- 177 (256)
+.+++||+|++.-.+++.++ ...++.+++++|||||+++++.....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 189 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKD---------------------IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSR 189 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSC---------------------HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGG
T ss_pred cCCCceeEEEEeeeeeecCC---------------------HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHh
Confidence 34678999999766554443 56889999999999999998754321
Q ss_pred ----------CHHHHHHHHHHcCCcEE
Q 025207 178 ----------DPSQICLQMMEKGYAAR 194 (256)
Q Consensus 178 ----------~~~~~~~~~~~~g~~~~ 194 (256)
...++.+++.+.||...
T Consensus 190 ~~~~~~~~~~~~~~~~~~l~~aGf~~~ 216 (292)
T 2aot_A 190 FPQDDLCQYITSDDLTQMLDNLGLKYE 216 (292)
T ss_dssp SCCCTTCCCCCHHHHHHHHHHHTCCEE
T ss_pred ccCCCcccCCCHHHHHHHHHHCCCceE
Confidence 23466777777777654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-16 Score=141.95 Aligned_cols=168 Identities=14% Similarity=0.114 Sum_probs=112.8
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----------CceEEEEeCCHHHH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-----------GVQYIATDINPYAV 83 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~-----------~~~v~giD~~~~~i 83 (256)
..+|+|++...++++.+.. ...+|||+|||+|.+++.+++.+.+..+ ...++|+|+++.++
T Consensus 225 G~fyTP~~Vv~lmv~ll~p--------~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~ 296 (544)
T 3khk_A 225 GQYYTPKSIVTLIVEMLEP--------YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTW 296 (544)
T ss_dssp TTTCCCHHHHHHHHHHHCC--------CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHH
T ss_pred CeEeCCHHHHHHHHHHHhc--------CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHH
Confidence 4678997666666654421 2349999999999999988776532111 35899999999999
Q ss_pred HHHHHHHHHcCCcceE--EEcchhhchhhhcCCCccEEEECCCCCCCCCc-ccccccchhhhcC--------C-CCcHHH
Q 025207 84 EVTRKTLEAHNVHADL--INTDIASGLEKRLAGLVDVMVVNPPYVPTPED-EVGREGIASAWAG--------G-ENGRAV 151 (256)
Q Consensus 84 ~~a~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-~~~~~~~~~~~~~--------~-~~~~~~ 151 (256)
+.|+.|+..+++...+ .++|..... .....+||+|++||||...... +......... .+ . ..+. .
T Consensus 297 ~lA~~Nl~l~gi~~~i~i~~gDtL~~~-~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~-~g~~~~~~~~~~~~~~-~ 373 (544)
T 3khk_A 297 KLAAMNMVIRGIDFNFGKKNADSFLDD-QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWT-INTNGEKRILTPPTGN-A 373 (544)
T ss_dssp HHHHHHHHHTTCCCBCCSSSCCTTTSC-SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGE-ECCC--CEECCCCTTC-T
T ss_pred HHHHHHHHHhCCCcccceeccchhcCc-ccccccccEEEECCCcCCccccchhhhhhhhhh-cCcccccccccCCCcc-h
Confidence 9999999999886544 778866542 2234789999999999864221 1111111111 11 1 1111 1
Q ss_pred HHHHHHHHhhccccCeEEEEEEeCC----C--CHHHHHHHHHHcCCcE
Q 025207 152 IDKILPSADKLLSKRGWLYLVTLTA----N--DPSQICLQMMEKGYAA 193 (256)
Q Consensus 152 ~~~~l~~~~~~LkpgG~l~~~~~~~----~--~~~~~~~~~~~~g~~~ 193 (256)
...+++.+.+.|+|||++.++.+.. . ....+++.+.+.+.-.
T Consensus 374 ~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l~ 421 (544)
T 3khk_A 374 NFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDLVE 421 (544)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCcHh
Confidence 2257888999999999999988742 1 3457888888776533
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=124.85 Aligned_cols=131 Identities=15% Similarity=0.242 Sum_probs=93.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH------cCCcc-eEEEcchhhchhh-hc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA------HNVHA-DLINTDIASGLEK-RL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~------~~~~~-~~~~~d~~~~~~~-~~ 112 (256)
.++.+|||||||+|.+++.++.. .|++.++|+|+++.+++.|++++.. .+..+ .++.+|+.+.++. +.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~ 120 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPL----FPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY 120 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGG----STTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC
T ss_pred CCCCeEEEEccCCcHHHHHHHHH----CCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC
Confidence 46789999999999998777765 7788999999999999999988764 34444 8999999875443 34
Q ss_pred CCCccEEEECCC--CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 113 AGLVDVMVVNPP--YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 113 ~~~fD~Ii~npP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
+++||.|+++.| +..... ...+ .....++..+.++|||||++++.+............+...+
T Consensus 121 ~~~~D~v~~~~~dp~~k~~h-------~krr--------~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~ 185 (235)
T 3ckk_A 121 KGQLTKMFFLFPDPHFKRTK-------HKWR--------IISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP 185 (235)
T ss_dssp TTCEEEEEEESCC--------------------------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTST
T ss_pred CcCeeEEEEeCCCchhhhhh-------hhhh--------hhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 688999998653 211000 0000 01257899999999999999997765444456666666665
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-15 Score=124.20 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=79.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.|+++.. ...++.+|+.+... +++||+|+
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~---~~~fD~v~ 115 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS------FGTVEGLELSADMLAIARRRNP----DAVLHHGDMRDFSL---GRRFSAVT 115 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT------SSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTCCC---SCCEEEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCC----CCEEEECChHHCCc---cCCcCEEE
Confidence 35689999999999987666554 3589999999999999998753 34899999887532 57999999
Q ss_pred ECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 121 VNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 121 ~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
++. .+.+.++ ......+++.+.++|||||++++.
T Consensus 116 ~~~~~l~~~~~------------------~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 116 CMFSSIGHLAG------------------QAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp ECTTGGGGSCH------------------HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred EcCchhhhcCC------------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 976 5543322 123568899999999999999984
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.3e-15 Score=118.30 Aligned_cols=106 Identities=21% Similarity=0.225 Sum_probs=85.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.|++++...+ ..+++.+|+.+.. .+++||+|+
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~---~~~~fD~v~ 119 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPH------CKRLTVIDVMPRAIGRACQRTKRWS-HISWAATDILQFS---TAELFDLIV 119 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGG------EEEEEEEESCHHHHHHHHHHTTTCS-SEEEEECCTTTCC---CSCCEEEEE
T ss_pred CCCCcEEEEcCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcccCC-CeEEEEcchhhCC---CCCCccEEE
Confidence 56789999999999988777654 3589999999999999999876543 4489999998864 358899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..+.+.++. .....++..+.++|||||++++.++
T Consensus 120 ~~~~l~~~~~~------------------~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 120 VAEVLYYLEDM------------------TQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp EESCGGGSSSH------------------HHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EccHHHhCCCH------------------HHHHHHHHHHHHHcCCCCEEEEEec
Confidence 98776654432 1246789999999999999999764
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.2e-15 Score=115.54 Aligned_cols=129 Identities=13% Similarity=0.154 Sum_probs=100.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++.. ...++.+|+.+.. ..+++||+|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~~~~~~~~a~~~~~----~~~~~~~d~~~~~--~~~~~~D~i~ 112 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ------GHDVLGTDLDPILIDYAKQDFP----EARWVVGDLSVDQ--ISETDFDLIV 112 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTSC--CCCCCEEEEE
T ss_pred cCCCeEEEECCCCCHHHHHHHHC------CCcEEEEcCCHHHHHHHHHhCC----CCcEEEcccccCC--CCCCceeEEE
Confidence 47889999999999998877765 4589999999999999988753 2478889987752 2357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCcEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++..+... ......++..+.++|+|||++++..+... ...++.+.+.+.||.......
T Consensus 113 ~~~~~~~~~~------------------~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 174 (195)
T 3cgg_A 113 SAGNVMGFLA------------------EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFE 174 (195)
T ss_dssp ECCCCGGGSC------------------HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEES
T ss_pred ECCcHHhhcC------------------hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeec
Confidence 9865432211 12257889999999999999999776543 567889999999998877654
Q ss_pred c
Q 025207 199 R 199 (256)
Q Consensus 199 ~ 199 (256)
.
T Consensus 175 ~ 175 (195)
T 3cgg_A 175 S 175 (195)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=126.21 Aligned_cols=114 Identities=16% Similarity=0.075 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+++++.+.. ..+.+|||+|||+|.++..++.. +.+|+|+|+|+.|++.|+++ .+..++++|
T Consensus 26 p~~l~~~l~~~~-----~~~~~vLDvGcGtG~~~~~l~~~------~~~v~gvD~s~~ml~~a~~~-----~~v~~~~~~ 89 (257)
T 4hg2_A 26 PRALFRWLGEVA-----PARGDALDCGCGSGQASLGLAEF------FERVHAVDPGEAQIRQALRH-----PRVTYAVAP 89 (257)
T ss_dssp CHHHHHHHHHHS-----SCSSEEEEESCTTTTTHHHHHTT------CSEEEEEESCHHHHHTCCCC-----TTEEEEECC
T ss_pred HHHHHHHHHHhc-----CCCCCEEEEcCCCCHHHHHHHHh------CCEEEEEeCcHHhhhhhhhc-----CCceeehhh
Confidence 356778777764 35689999999999987776654 35899999999999877542 234889999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+.+. ++.+++||+|++.-.++..+ ...++.++.++|||||+++++.....
T Consensus 90 ~e~~--~~~~~sfD~v~~~~~~h~~~----------------------~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 90 AEDT--GLPPASVDVAIAAQAMHWFD----------------------LDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp TTCC--CCCSSCEEEEEECSCCTTCC----------------------HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred hhhh--cccCCcccEEEEeeehhHhh----------------------HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 8775 44578999999976654321 46789999999999999998775443
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=117.76 Aligned_cols=125 Identities=19% Similarity=0.277 Sum_probs=96.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh--hcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK--RLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +++++|+|+++.+++.++++ ....+...|+.+.... ...++||+
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR------GIEAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC------CCEEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCccE
Confidence 46799999999999988766654 56899999999999999886 2337888887775221 22456999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
|+++..+. ..+ ...+++.+.++|||||++++..+..
T Consensus 120 v~~~~~l~-~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (227)
T 3e8s_A 120 ICANFALL-HQD---------------------IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAG 177 (227)
T ss_dssp EEEESCCC-SSC---------------------CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSS
T ss_pred EEECchhh-hhh---------------------HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhcccc
Confidence 99987766 221 3578999999999999999976421
Q ss_pred ---------CCHHHHHHHHHHcCCcEEEEEe
Q 025207 177 ---------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 ---------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...+++.+.+++.||....+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 178 DWQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp CCCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred CcccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 1457899999999999877664
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=122.05 Aligned_cols=102 Identities=14% Similarity=0.239 Sum_probs=85.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++.+|||+|||+|..++.++.. .++.+|+++|+++.+++.|++++...++. .+++.+|+.+..+...+++||+|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V 146 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASI----SDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMI 146 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTT----CTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEE
Confidence 6789999999999998888774 56789999999999999999999998875 39999999887651235789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+++.+.. .+..+++.+.++|+|||++++
T Consensus 147 ~~~~~~~------------------------~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 147 FIDAAKA------------------------QSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp EEETTSS------------------------SHHHHHHHHGGGEEEEEEEEE
T ss_pred EEcCcHH------------------------HHHHHHHHHHHhcCCCeEEEE
Confidence 9975421 156789999999999999987
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.7e-15 Score=128.16 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=96.9
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC------------------------------
Q 025207 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP------------------------------ 69 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~------------------------------ 69 (256)
+.+..+.++..++..... .++..|||+|||+|.++++++.+.....|
T Consensus 182 ~Apl~e~lAa~ll~l~~~---~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~ 258 (393)
T 3k0b_A 182 SAPIKETMAAALVLLTSW---HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLA 258 (393)
T ss_dssp SCSCCHHHHHHHHHHSCC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHhCC---CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhh
Confidence 334467788877765432 46789999999999999999987654222
Q ss_pred ----CceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhc
Q 025207 70 ----GVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWA 143 (256)
Q Consensus 70 ----~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~ 143 (256)
...|+|+|+++.+++.|++|+..+++. .+++++|+.+... +.+||+|++||||......+
T Consensus 259 ~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~---~~~fD~Iv~NPPYg~rl~~~----------- 324 (393)
T 3k0b_A 259 NYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT---EDEYGVVVANPPYGERLEDE----------- 324 (393)
T ss_dssp CTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC---CCCSCEEEECCCCCCSHHHH-----------
T ss_pred cccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC---CCCCCEEEECCCCccccCCc-----------
Confidence 256999999999999999999999986 3899999988643 35899999999997432110
Q ss_pred CCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeC
Q 025207 144 GGENGRAVIDKILPSADKLLS--KRGWLYLVTLT 175 (256)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~ 175 (256)
..+..+...+.+.|| +||.+++++..
T Consensus 325 ------~~l~~ly~~lg~~lk~~~g~~~~iit~~ 352 (393)
T 3k0b_A 325 ------EAVRQLYREMGIVYKRMPTWSVYVLTSY 352 (393)
T ss_dssp ------HHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred ------hhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 113334444444444 49999987753
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-15 Score=124.88 Aligned_cols=108 Identities=12% Similarity=0.179 Sum_probs=88.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++.. +++|+|+|+++.+++.|++++...++. .+++.+|+.+. +++||+
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~fD~ 158 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERF-----DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-----AEPVDR 158 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-----CCCCSE
T ss_pred CCcCEEEEEcccchHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-----CCCcCE
Confidence 578899999999999998888763 459999999999999999999887764 38889998664 268999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
|+++..+.+.+.. ....+++.+.++|||||++++..+...
T Consensus 159 v~~~~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 159 IVSIEAFEHFGHE-------------------NYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp EEEESCGGGTCGG-------------------GHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred EEEeChHHhcCHH-------------------HHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 9997665544321 157889999999999999999776443
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-15 Score=120.69 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=69.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|++++..+++ ..+++++|+.+... +++||+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v 148 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT------GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS---FLKADVV 148 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG---GCCCSEE
T ss_pred CCCEEEECccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc---cCCCCEE
Confidence 6899999999999999888875 36999999999999999999999997 34999999988752 4789999
Q ss_pred EECCCCCCCCC
Q 025207 120 VVNPPYVPTPE 130 (256)
Q Consensus 120 i~npP~~~~~~ 130 (256)
+++|||.....
T Consensus 149 ~~~~~~~~~~~ 159 (241)
T 3gdh_A 149 FLSPPWGGPDY 159 (241)
T ss_dssp EECCCCSSGGG
T ss_pred EECCCcCCcch
Confidence 99999986544
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-15 Score=129.79 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=96.4
Q ss_pred chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC---------------------------------
Q 025207 23 DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP--------------------------------- 69 (256)
Q Consensus 23 ~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~--------------------------------- 69 (256)
..+.++..++..... .++.+|||+|||+|.++++++.+.....|
T Consensus 179 l~e~lAa~ll~~~~~---~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 255 (385)
T 3ldu_A 179 IRETLAAGLIYLTPW---KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNE 255 (385)
T ss_dssp CCHHHHHHHHHTSCC---CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred CcHHHHHHHHHhhCC---CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhcc
Confidence 356777877776432 46789999999999999999987543222
Q ss_pred -CceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCC
Q 025207 70 -GVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGE 146 (256)
Q Consensus 70 -~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~ 146 (256)
...|+|+|+++.+++.|++|+..+++. .++.++|+.+... +.+||+|++||||......
T Consensus 256 ~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~---~~~~D~Iv~NPPyg~rl~~--------------- 317 (385)
T 3ldu_A 256 SKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS---EDEFGFIITNPPYGERLED--------------- 317 (385)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC---SCBSCEEEECCCCCCSHHH---------------
T ss_pred CCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc---CCCCcEEEECCCCcCccCC---------------
Confidence 257999999999999999999999985 3899999988643 3689999999999743211
Q ss_pred CcHHHHHHHHHHHhhcccc--CeEEEEEEeC
Q 025207 147 NGRAVIDKILPSADKLLSK--RGWLYLVTLT 175 (256)
Q Consensus 147 ~~~~~~~~~l~~~~~~Lkp--gG~l~~~~~~ 175 (256)
......+...+.+.|++ ||.+++++..
T Consensus 318 --~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 346 (385)
T 3ldu_A 318 --KDSVKQLYKELGYAFRKLKNWSYYLITSY 346 (385)
T ss_dssp --HHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred --HHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 11234444555555555 8998887753
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=117.19 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+.+.+...+ .++.+|||+|||+|.++..+++. .+++|+|+++.+++.|+++...++...+++.+|+
T Consensus 21 ~~~~~~~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~-------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~ 88 (243)
T 3d2l_A 21 PEWVAWVLEQV-----EPGKRIADIGCGTGTATLLLADH-------YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDM 88 (243)
T ss_dssp HHHHHHHHHHS-----CTTCEEEEESCTTCHHHHHHTTT-------SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCG
T ss_pred HHHHHHHHHHc-----CCCCeEEEecCCCCHHHHHHhhC-------CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcCh
Confidence 44556666654 35689999999999987655442 5899999999999999999987776668999998
Q ss_pred hhchhhhcCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 105 ASGLEKRLAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+... +++||+|+++. ++.+..+ ......+++.+.++|+|||++++..
T Consensus 89 ~~~~~---~~~fD~v~~~~~~~~~~~~------------------~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 89 RELEL---PEPVDAITILCDSLNYLQT------------------EADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GGCCC---SSCEEEEEECTTGGGGCCS------------------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCC---CCCcCEEEEeCCchhhcCC------------------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 77532 37899999975 3332211 1236788999999999999999843
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-15 Score=120.73 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=86.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcC----CC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLA----GL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~----~~ 115 (256)
++.+|||+|||+|..++.++..+. ++++|+++|+++.+++.|++++...++. .+++.+|+.+..+.... ++
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALP---KDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQ 140 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCC---TTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred CCCEEEEeCCcchHHHHHHHHhCC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence 678999999999999888877631 2679999999999999999999998876 38999999876554322 78
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
||+|+++++. .....+++.+.++|+|||++++..
T Consensus 141 fD~v~~~~~~------------------------~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 141 YDLIYIDADK------------------------ANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEEEECSCG------------------------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccEEEECCCH------------------------HHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999998652 115678999999999999999854
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=122.83 Aligned_cols=137 Identities=13% Similarity=0.103 Sum_probs=97.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----CCcceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----NVHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~ 115 (256)
.++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++... ....+++.+|+.+......+++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 169 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRH----GTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNT 169 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTC----TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTC
T ss_pred CCCCeEEEEcCCCCHHHHHHHhC----CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCc
Confidence 46789999999999988777654 45679999999999999999987431 1234899999987653223578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----CHHHHHHHHHHcCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----DPSQICLQMMEKGY 191 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~~~~~g~ 191 (256)
||+|+++++....+... .....+++.+.++|+|||++++...... ....+.+.+++.||
T Consensus 170 fDvIi~d~~~~~~~~~~-----------------l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF 232 (304)
T 3bwc_A 170 YDVVIIDTTDPAGPASK-----------------LFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGF 232 (304)
T ss_dssp EEEEEEECC--------------------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTC
T ss_pred eeEEEECCCCccccchh-----------------hhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCC
Confidence 99999988753221100 0015789999999999999999654321 23467778888899
Q ss_pred cEEEEEe
Q 025207 192 AARIVVQ 198 (256)
Q Consensus 192 ~~~~~~~ 198 (256)
.....+.
T Consensus 233 ~~v~~~~ 239 (304)
T 3bwc_A 233 ASVQYAL 239 (304)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 8765553
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-15 Score=117.91 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=95.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++ +|||+|||+|.++..++.. +.+++|+|+++.+++.|+++....+....++.+|+.+.. +.+++||+|++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~ 100 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL------GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD--IVADAWEGIVS 100 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT------TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS--CCTTTCSEEEE
T ss_pred CC-CEEEECCCCCHhHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC--CCcCCccEEEE
Confidence 45 9999999999988766654 459999999999999999999887776689999987762 33578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------------CHHHHHHH
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----------------DPSQICLQ 185 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------~~~~~~~~ 185 (256)
+..+. + ......++..+.++|+|||++++...... ...++.+.
T Consensus 101 ~~~~~--~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (202)
T 2kw5_A 101 IFCHL--P-------------------SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSE 159 (202)
T ss_dssp ECCCC--C-------------------HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHH
T ss_pred EhhcC--C-------------------HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHH
Confidence 64322 1 12367889999999999999999875322 34566677
Q ss_pred HHHcCCcEEEEE
Q 025207 186 MMEKGYAARIVV 197 (256)
Q Consensus 186 ~~~~g~~~~~~~ 197 (256)
+. ||+...+.
T Consensus 160 l~--Gf~v~~~~ 169 (202)
T 2kw5_A 160 LP--SLNWLIAN 169 (202)
T ss_dssp CS--SSCEEEEE
T ss_pred hc--CceEEEEE
Confidence 66 88765543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-14 Score=126.95 Aligned_cols=168 Identities=15% Similarity=0.103 Sum_probs=114.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|..++.++..+. +++.|+|+|+++.+++.+++|+.++++.+ .++++|+.+... ..+++||.|+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~---~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-~~~~~fD~Il 192 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMN---NEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-AVPEMFDAIL 192 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTT---TCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH-HSTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh-hccccCCEEE
Confidence 789999999999999999998753 34699999999999999999999998865 888999877532 1357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCC----CcHHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHcCCc-
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGE----NGRAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEKGYA- 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~g~~- 192 (256)
+|||+.....- .+.+...+.-.. .-......++..+.++|||||++++++++.. ....+...+++++-.
T Consensus 193 ~D~PcSg~G~~---~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~~~~ 269 (479)
T 2frx_A 193 LDAPCSGEGVV---RKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAV 269 (479)
T ss_dssp EECCCCCGGGG---GTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHSTTTE
T ss_pred ECCCcCCcccc---cCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCCCce
Confidence 99998643211 111111110000 0012345789999999999999999887653 233455556665421
Q ss_pred E--------------------EEEEecCCCCccEEEEEEEecCc
Q 025207 193 A--------------------RIVVQRSTEEENLHIIKFWRDFD 216 (256)
Q Consensus 193 ~--------------------~~~~~~~~~~~~~~l~~~~~~~~ 216 (256)
. ..+++.....+.+++....|...
T Consensus 270 ~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~dGfF~A~l~k~~~ 313 (479)
T 2frx_A 270 EFLPLGDLFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQA 313 (479)
T ss_dssp EECCCTTSSTTGGGGBCTTSCEEECTTTTTSCCEEEEEEEECSC
T ss_pred ecccccccccccccccccCCeEEECCCCCCcCccEEEEEEEcCC
Confidence 1 12333344456677777776543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.4e-15 Score=121.38 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=88.9
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
+..+++.+. ..++.+|||+|||+|.++..++.. .|+.+++|+|+++.+++.++++. ....++.+|+.+.
T Consensus 22 ~~~l~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~~ 90 (259)
T 2p35_A 22 ARDLLAQVP---LERVLNGYDLGCGPGNSTELLTDR----YGVNVITGIDSDDDMLEKAADRL----PNTNFGKADLATW 90 (259)
T ss_dssp HHHHHTTCC---CSCCSSEEEETCTTTHHHHHHHHH----HCTTSEEEEESCHHHHHHHHHHS----TTSEEEECCTTTC
T ss_pred HHHHHHhcC---CCCCCEEEEecCcCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhC----CCcEEEECChhhc
Confidence 344554442 357789999999999999888877 45679999999999999998872 2348999998775
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
. .+++||+|+++..+.+.++ ...++.++.++|+|||++++..+.
T Consensus 91 ~---~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 91 K---PAQKADLLYANAVFQWVPD---------------------HLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp C---CSSCEEEEEEESCGGGSTT---------------------HHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred C---ccCCcCEEEEeCchhhCCC---------------------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 3 3578999999876654332 568899999999999999998753
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-15 Score=122.51 Aligned_cols=131 Identities=15% Similarity=0.211 Sum_probs=95.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--------CCcc-eEEEcchhhchhh-h
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--------NVHA-DLINTDIASGLEK-R 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--------~~~~-~~~~~d~~~~~~~-~ 111 (256)
++.+|||+|||+|.+++.++.. ++++.++|+|+++.+++.|++++..+ ++.+ .++.+|+.+.++. +
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~ 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPA----FPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHH----STTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS
T ss_pred CCCEEEEEcCCCCHHHHHHHHh----CCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc
Confidence 6789999999999999998887 67789999999999999999998876 6644 8999999875543 3
Q ss_pred cCCCccEEEECCC--CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025207 112 LAGLVDVMVVNPP--YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 112 ~~~~fD~Ii~npP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
.++++|.|+.+.| +...... .... ....++..+.++|+|||++++.+......+.+...+...
T Consensus 125 ~~~~~d~v~~~~p~p~~k~~~~-------~~r~--------~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 189 (246)
T 2vdv_E 125 EKGQLSKMFFCFPDPHFKQRKH-------KARI--------ITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH 189 (246)
T ss_dssp CTTCEEEEEEESCCCC-------------CSSC--------CCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHS
T ss_pred cccccCEEEEECCCcccccchh-------HHhh--------ccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhC
Confidence 4578999987543 2111000 0000 125789999999999999999665433334555566666
Q ss_pred CC
Q 025207 190 GY 191 (256)
Q Consensus 190 g~ 191 (256)
++
T Consensus 190 ~~ 191 (246)
T 2vdv_E 190 PL 191 (246)
T ss_dssp TT
T ss_pred cC
Confidence 54
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=124.05 Aligned_cols=130 Identities=16% Similarity=0.092 Sum_probs=94.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. ...+|+|+|+++.+++.|+++....+....++.+|+.+...++.+++||+|+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~ 133 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEA-----PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTS-----CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhc-----CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEE
Confidence 47889999999999988777543 2348999999999999999988777755689999998875555568999999
Q ss_pred EC-CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------C-----HHHHHHH
Q 025207 121 VN-PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------D-----PSQICLQ 185 (256)
Q Consensus 121 ~n-pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------~-----~~~~~~~ 185 (256)
++ .+. ..+.. .......++.++.++|||||+++++..... . .+.....
T Consensus 134 ~d~~~~-~~~~~----------------~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (236)
T 1zx0_A 134 YDTYPL-SEETW----------------HTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPA 196 (236)
T ss_dssp ECCCCC-BGGGT----------------TTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHH
T ss_pred ECCccc-chhhh----------------hhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHH
Confidence 94 221 00000 012356789999999999999998543210 0 1234566
Q ss_pred HHHcCCc
Q 025207 186 MMEKGYA 192 (256)
Q Consensus 186 ~~~~g~~ 192 (256)
+.+.||.
T Consensus 197 l~~aGF~ 203 (236)
T 1zx0_A 197 LLEAGFR 203 (236)
T ss_dssp HHHTTCC
T ss_pred HHHCCCC
Confidence 7788886
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-15 Score=123.37 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=98.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-C--Cc-ceEEEcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-N--VH-ADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~--~~-~~~~~~d~~~~~~~~~~~~f 116 (256)
.++.+|||+|||+|.++..++..+ .++.+++++|+++.+++.|++++..+ + .. .+++.+|+.+.. +.+++|
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~--~~~~~~ 172 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAV---GPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE--LPDGSV 172 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC--CCTTCE
T ss_pred CCCCEEEEEcccccHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC--CCCCce
Confidence 578899999999999999888854 35679999999999999999999887 5 33 388999987762 235789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH-cCCcEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME-KGYAARI 195 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~g~~~~~ 195 (256)
|+|++++|- ...++..+.++|+|||++++..+......++...+.+ .+|....
T Consensus 173 D~v~~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~ 226 (280)
T 1i9g_A 173 DRAVLDMLA--------------------------PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPR 226 (280)
T ss_dssp EEEEEESSC--------------------------GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCE
T ss_pred eEEEECCcC--------------------------HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcE
Confidence 999998662 2356889999999999999988765555566677766 6665443
Q ss_pred E
Q 025207 196 V 196 (256)
Q Consensus 196 ~ 196 (256)
+
T Consensus 227 ~ 227 (280)
T 1i9g_A 227 A 227 (280)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=138.57 Aligned_cols=161 Identities=9% Similarity=0.114 Sum_probs=112.3
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC--------------CceEEEEeCCH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP--------------GVQYIATDINP 80 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~--------------~~~v~giD~~~ 80 (256)
..+|+|++...++++.+ . +.++.+|||+|||+|.+++.++..+..... ...++|+|+++
T Consensus 149 G~fyTP~~iv~~mv~~l----~---p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~ 221 (541)
T 2ar0_A 149 GQYFTPRPLIKTIIHLL----K---PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 221 (541)
T ss_dssp -CCCCCHHHHHHHHHHH----C---CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH
T ss_pred CeeeCCHHHHHHHHHHh----c---cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCH
Confidence 45788865555554433 2 246789999999999999999887654331 24799999999
Q ss_pred HHHHHHHHHHHHcCCc------ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHH
Q 025207 81 YAVEVTRKTLEAHNVH------ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDK 154 (256)
Q Consensus 81 ~~i~~a~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
.+++.|+.|+..+++. ..+.++|...... ....+||+|++||||......... ..+. ...+ .....
T Consensus 222 ~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~-~~~~~fD~Vv~NPPf~~~~~~~~~-----~~~~-~~~~-~~~~~ 293 (541)
T 2ar0_A 222 GTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG-ENLPKAHIVATNPPFGSAAGTNIT-----RTFV-HPTS-NKQLC 293 (541)
T ss_dssp HHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHH-HTSCCEEEEEECCCCTTCSSCCCC-----SCCS-SCCS-CHHHH
T ss_pred HHHHHHHHHHHHhCCCccccccCCeEeCCCccccc-ccccCCeEEEECCCcccccchhhH-----hhcC-CCCC-chHHH
Confidence 9999999999988875 4789999766432 224689999999999876553310 0010 0111 11346
Q ss_pred HHHHHhhccccCeEEEEEEeCC---C--CHHHHHHHHHHcC
Q 025207 155 ILPSADKLLSKRGWLYLVTLTA---N--DPSQICLQMMEKG 190 (256)
Q Consensus 155 ~l~~~~~~LkpgG~l~~~~~~~---~--~~~~~~~~~~~~g 190 (256)
++..+.++|+|||++.++.+.. . ....+++.+.+.+
T Consensus 294 Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~ 334 (541)
T 2ar0_A 294 FMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 334 (541)
T ss_dssp HHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE
T ss_pred HHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhcC
Confidence 7889999999999999988743 1 2345777776654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=116.96 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=86.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc---CC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL---AG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~---~~ 114 (256)
.++.+|||+|||+|..++.++.. .+ +++|+++|+++.+++.|++++...++.. +++.+|+.+..+... .+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 132 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARG----LSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYE 132 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTT----CCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCC
T ss_pred hCCCEEEEecCCccHHHHHHHHh----CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCC
Confidence 36799999999999998888776 34 6799999999999999999999888753 899999987654432 25
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+|+++++.. ....+++.+.++|+|||++++..
T Consensus 133 ~fD~v~~d~~~~------------------------~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 133 PFDFIFIDADKQ------------------------NNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp CCSEEEECSCGG------------------------GHHHHHHHHHHTCCTTCEEEEES
T ss_pred CcCEEEEcCCcH------------------------HHHHHHHHHHHhcCCCcEEEEeC
Confidence 799999986521 15688999999999999888743
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-15 Score=119.64 Aligned_cols=128 Identities=12% Similarity=0.131 Sum_probs=97.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +. .+++|+|+++.+++.++++.... ...++.+|+.+.. +.+++||+|+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~d~~~~~--~~~~~fD~v~ 112 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEH----GA-SYVLGLDLSEKMLARARAAGPDT--GITYERADLDKLH--LPQDSFDLAY 112 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT----TC-SEEEEEESCHHHHHHHHHTSCSS--SEEEEECCGGGCC--CCTTCEEEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHC----CC-CeEEEEcCCHHHHHHHHHhcccC--CceEEEcChhhcc--CCCCCceEEE
Confidence 47789999999999998777765 21 28999999999999998875432 2478889987753 3357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------------------------
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------------ 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------ 176 (256)
++.++.+.++ ...+++.+.++|+|||++++..+..
T Consensus 113 ~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
T 3bkw_A 113 SSLALHYVED---------------------VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDR 171 (243)
T ss_dssp EESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECC
T ss_pred Eeccccccch---------------------HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecc
Confidence 9776544322 5688999999999999999865310
Q ss_pred --------------------CCHHHHHHHHHHcCCcEEEEEe
Q 025207 177 --------------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 --------------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....++.+.+++.||....+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~ 213 (243)
T 3bkw_A 172 YLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEE 213 (243)
T ss_dssp TTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeecc
Confidence 1356788889999998766553
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=123.32 Aligned_cols=143 Identities=14% Similarity=0.089 Sum_probs=106.6
Q ss_pred CCccccCCchHHHHHHHHHhhc-------------ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH
Q 025207 15 PEVYEPCDDSFALVDALLADRI-------------NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~-------------~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~ 81 (256)
+.++.|+++...+.+.+..... .+...++.+|||+|||+|.+++.+++. +.+++++|+++.
T Consensus 51 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~------~~~v~~vD~~~~ 124 (248)
T 2yvl_A 51 NGFEVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV------AGEVWTFEAVEE 124 (248)
T ss_dssp TTEEEECCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHH
T ss_pred EEEEEeCCCHHHHHHhcCcCCCCcccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh------CCEEEEEecCHH
Confidence 5678888887777654433221 011247889999999999999888876 458999999999
Q ss_pred HHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH
Q 025207 82 AVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA 159 (256)
Q Consensus 82 ~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (256)
+++.|+++...+++. .++..+|+.+... .+++||+|++++|- ...+++.+
T Consensus 125 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~v~~~~~~--------------------------~~~~l~~~ 176 (248)
T 2yvl_A 125 FYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--PEGIFHAAFVDVRE--------------------------PWHYLEKV 176 (248)
T ss_dssp HHHHHHHHHHHTTCCTTEEEECSCTTTSCC--CTTCBSEEEECSSC--------------------------GGGGHHHH
T ss_pred HHHHHHHHHHHcCCCCcEEEEEcChhhccc--CCCcccEEEECCcC--------------------------HHHHHHHH
Confidence 999999999888863 3888899877531 23689999998762 23568888
Q ss_pred hhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025207 160 DKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
.++|+|||++++..+......++...+.+. |.
T Consensus 177 ~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 177 HKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp HHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred HHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 999999999999887554455555665554 44
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=112.89 Aligned_cols=135 Identities=11% Similarity=0.195 Sum_probs=98.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. + .+++|+|+++.+++.++++ ....++..+| .++.+++||+|+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~----~~~v~~~~~d-----~~~~~~~~D~v~ 80 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEF----A--TKLYCIDINVIALKEVKEK----FDSVITLSDP-----KEIPDNSVDFIL 80 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTT----E--EEEEEECSCHHHHHHHHHH----CTTSEEESSG-----GGSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhh----c--CeEEEEeCCHHHHHHHHHh----CCCcEEEeCC-----CCCCCCceEEEE
Confidence 57789999999999988777665 2 3899999999999999887 2234788888 233457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------------CHHHHHHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------------DPSQICLQMME 188 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------~~~~~~~~~~~ 188 (256)
++..+.+.++ ...+++++.++|||||++++...... ...++.++++
T Consensus 81 ~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 138 (170)
T 3i9f_A 81 FANSFHDMDD---------------------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS- 138 (170)
T ss_dssp EESCSTTCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-
T ss_pred EccchhcccC---------------------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-
Confidence 9877765532 46889999999999999999765332 2456777776
Q ss_pred cCCcEEEEEecCCCCccEEEEEEEecCc
Q 025207 189 KGYAARIVVQRSTEEENLHIIKFWRDFD 216 (256)
Q Consensus 189 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (256)
||+........ ...+.+.+.+...
T Consensus 139 -Gf~~~~~~~~~---~~~~~l~~~~~~~ 162 (170)
T 3i9f_A 139 -NFVVEKRFNPT---PYHFGLVLKRKTS 162 (170)
T ss_dssp -TEEEEEEECSS---TTEEEEEEEECCC
T ss_pred -CcEEEEccCCC---CceEEEEEecCCC
Confidence 88866554432 2334555555443
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-15 Score=120.51 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=85.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhc-----CC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRL-----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~-----~~ 114 (256)
++++|||+|||+|..++.+++.+. ++++|+++|+++.+++.|++++...++. .+++.+|+.+.++... .+
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIP---EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 155 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSC---TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence 678999999999999999988742 2679999999999999999999998874 3899999987654331 57
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+||+|+++.+.. .+..+++.+.++|+|||++++.
T Consensus 156 ~fD~V~~d~~~~------------------------~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 156 SYDFIFVDADKD------------------------NYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp CBSEEEECSCST------------------------THHHHHHHHHHHBCTTCCEEEE
T ss_pred CEEEEEEcCchH------------------------HHHHHHHHHHHhCCCCeEEEEe
Confidence 899999975410 1568899999999999999874
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-15 Score=119.17 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+.+.+...+ .++.+|||+|||+|.++..+++. ++. +++|+|+++.+++.++++... .....++.+|+
T Consensus 30 ~~~~~~l~~~~-----~~~~~vLdiGcG~G~~~~~l~~~----~~~-~v~~~D~s~~~~~~a~~~~~~-~~~i~~~~~d~ 98 (215)
T 2pxx_A 30 SSFRALLEPEL-----RPEDRILVLGCGNSALSYELFLG----GFP-NVTSVDYSSVVVAAMQACYAH-VPQLRWETMDV 98 (215)
T ss_dssp HHHHHHHGGGC-----CTTCCEEEETCTTCSHHHHHHHT----TCC-CEEEEESCHHHHHHHHHHTTT-CTTCEEEECCT
T ss_pred HHHHHHHHHhc-----CCCCeEEEECCCCcHHHHHHHHc----CCC-cEEEEeCCHHHHHHHHHhccc-CCCcEEEEcch
Confidence 34445454443 46789999999999998887775 333 899999999999999988753 12348889998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHH
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 184 (256)
.+. ++.+++||+|++++++........ ..|............++..+.++|+|||+++++.+.. ......
T Consensus 99 ~~~--~~~~~~fD~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~--~~~~~~ 168 (215)
T 2pxx_A 99 RKL--DFPSASFDVVLEKGTLDALLAGER------DPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA--PHFRTR 168 (215)
T ss_dssp TSC--CSCSSCEEEEEEESHHHHHTTTCS------CTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC--HHHHHH
T ss_pred hcC--CCCCCcccEEEECcchhhhccccc------cccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC--cHHHHH
Confidence 775 334578999999877632211000 0000000112346788999999999999999977533 344555
Q ss_pred HHHHcCCcE
Q 025207 185 QMMEKGYAA 193 (256)
Q Consensus 185 ~~~~~g~~~ 193 (256)
.+...++.+
T Consensus 169 ~~~~~~~~~ 177 (215)
T 2pxx_A 169 HYAQAYYGW 177 (215)
T ss_dssp HHCCGGGCE
T ss_pred HHhccccCc
Confidence 665555533
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=123.83 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=86.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +..+++|+|+++.+++.|++++...+.. ..++.+|+.+.... .+++||+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~ 136 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-----GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDV 136 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-----TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-CCCCcCE
Confidence 57899999999999988777665 2348999999999999999999877663 38899998775221 3578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
|+++..+++.. ........++..+.++|+|||++++..+.
T Consensus 137 v~~~~~l~~~~-----------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 137 ISSQFSFHYAF-----------------STSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp EEEESCGGGGG-----------------SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEECchhhhhc-----------------CCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 99975442200 01233678899999999999999997753
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-14 Score=117.60 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=86.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhc-CCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~-~~~f 116 (256)
.++.+|||+|||+|..++.++.. .+ +++|+++|+++.+++.|++++...++. .+++.+|+.+.++... .++|
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~f 137 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARE----LPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAF 137 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTT----SCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred cCCCEEEEecCCchHHHHHHHHh----CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCe
Confidence 36799999999999998888776 34 679999999999999999999998876 3899999988655432 3489
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+++.+. .....+++.+.++|||||++++...
T Consensus 138 D~V~~d~~~------------------------~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 138 DLIFIDADK------------------------PNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp SEEEECSCG------------------------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEEECCch------------------------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 999997541 1156789999999999999988543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-15 Score=120.59 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=89.3
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch
Q 025207 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL 108 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~ 108 (256)
+++...+......++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+++....+....++++|+.+..
T Consensus 28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~ 101 (252)
T 1wzn_A 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA 101 (252)
T ss_dssp HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC
T ss_pred HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc
Confidence 33333333332356789999999999998887764 458999999999999999999888777789999998753
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
. +++||+|++........ .......++..+.++|+|||++++..+.
T Consensus 102 ~---~~~fD~v~~~~~~~~~~------------------~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 102 F---KNEFDAVTMFFSTIMYF------------------DEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp C---CSCEEEEEECSSGGGGS------------------CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred c---CCCccEEEEcCCchhcC------------------CHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 2 36899999853211100 0123678899999999999999986553
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-14 Score=124.27 Aligned_cols=147 Identities=15% Similarity=0.176 Sum_probs=109.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.|++++...++. .+++.+|+.+..+ ..||+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~ 251 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALR----APHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP----VTADV 251 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS----CCEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHH----CCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC----CCCCE
Confidence 46789999999999998888877 67889999999 99999999999888875 4899999876432 34999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe--CC--------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL--TA-------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~-------------------- 176 (256)
|+++..+++.++. ....+++++.+.|+|||++++... ..
T Consensus 252 v~~~~vl~~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (374)
T 1qzz_A 252 VLLSFVLLNWSDE-------------------DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFM 312 (374)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCHH-------------------HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhC
Confidence 9997665443321 135889999999999999998765 21
Q ss_pred ----CCHHHHHHHHHHcCCcEEEEEecCCCC--ccEEEEEEEecC
Q 025207 177 ----NDPSQICLQMMEKGYAARIVVQRSTEE--ENLHIIKFWRDF 215 (256)
Q Consensus 177 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~l~~~~~~~ 215 (256)
....++.+++++.||....+....... ....++++.+..
T Consensus 313 ~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 313 GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEECC
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEECc
Confidence 145677888899999877766543211 112556666643
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.6e-15 Score=126.09 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=88.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC------------CcceEEEcchhhch
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN------------VHADLINTDIASGL 108 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~------------~~~~~~~~d~~~~~ 108 (256)
.++.+|||+|||+|.+++.++..+ ++..+|+++|+++.+++.|++++...+ ...+++.+|+.+..
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~---g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~ 180 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAV---GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 180 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence 578999999999999999888864 345699999999999999999988532 13488999988764
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025207 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
.++.+++||+|++++|-. ..++..+.++|+|||++++..+......+..+.+.+
T Consensus 181 ~~~~~~~fD~V~~~~~~~--------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 234 (336)
T 2b25_A 181 EDIKSLTFDAVALDMLNP--------------------------HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRT 234 (336)
T ss_dssp -------EEEEEECSSST--------------------------TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCCCeeEEEECCCCH--------------------------HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 344456899999986521 235888999999999999877654444455555555
Q ss_pred c
Q 025207 189 K 189 (256)
Q Consensus 189 ~ 189 (256)
.
T Consensus 235 ~ 235 (336)
T 2b25_A 235 C 235 (336)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-15 Score=117.51 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=85.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. ++.+++|+|+++.+++.|++++...+....++.+|+.+. ++.+++||+|+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~ 94 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-----DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL--PFKDESMSFVY 94 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-----TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC--CSCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-----CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC--CCCCCceeEEE
Confidence 46799999999999875444332 356999999999999999999887776668999998775 23357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
++.++.+.+. .....+++.+.++|||||++++....
T Consensus 95 ~~~~l~~~~~-------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 95 SYGTIFHMRK-------------------NDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp ECSCGGGSCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcChHHhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9765543321 23678899999999999999997754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.7e-14 Score=121.68 Aligned_cols=142 Identities=13% Similarity=0.235 Sum_probs=108.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.|++++...++. .+++.+|+.+.. +..||+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----p~~~D~ 271 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDA----FPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI----PDGADV 271 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC----CSSCSE
T ss_pred ccCcEEEEeCCCccHHHHHHHHH----CCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC----CCCceE
Confidence 46799999999999998888877 78889999999 99999999999888764 389999988432 237999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------- 177 (256)
|++.-.++..++. ....+++++.+.|+|||+++++.....
T Consensus 272 v~~~~vlh~~~d~-------------------~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~ 332 (369)
T 3gwz_A 272 YLIKHVLHDWDDD-------------------DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGA 332 (369)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCC
T ss_pred EEhhhhhccCCHH-------------------HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCc
Confidence 9997655433321 245789999999999999999764322
Q ss_pred --CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025207 178 --DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 178 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
..++..+++++.||+...+...... ...+++..
T Consensus 333 ~~t~~e~~~ll~~aGf~~~~~~~~~~~--~~svie~~ 367 (369)
T 3gwz_A 333 ERSESEFAALLEKSGLRVERSLPCGAG--PVRIVEIR 367 (369)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEECSSS--SEEEEEEE
T ss_pred cCCHHHHHHHHHHCCCeEEEEEECCCC--CcEEEEEE
Confidence 2457788888999998877663222 23455543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-15 Score=122.24 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=83.6
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
++.+++.+. ..++.+|||+|||+|.+++.+++. +++|+|+|+|+.|++.|++++..+.....+...+..
T Consensus 34 ~~~il~~l~---l~~g~~VLDlGcGtG~~a~~La~~------g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~-- 102 (261)
T 3iv6_A 34 RENDIFLEN---IVPGSTVAVIGASTRFLIEKALER------GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAE-- 102 (261)
T ss_dssp HHHHHHTTT---CCTTCEEEEECTTCHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSC--
T ss_pred HHHHHHhcC---CCCcCEEEEEeCcchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccc--
Confidence 344555442 357899999999999999888875 458999999999999999987644222222222220
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
.....+++||+|+++..+.+.... ....++..+.++| |||+++++......
T Consensus 103 ~~~~~~~~fD~Vv~~~~l~~~~~~-------------------~~~~~l~~l~~lL-PGG~l~lS~~~g~~ 153 (261)
T 3iv6_A 103 IPKELAGHFDFVLNDRLINRFTTE-------------------EARRACLGMLSLV-GSGTVRASVKLGFY 153 (261)
T ss_dssp CCGGGTTCCSEEEEESCGGGSCHH-------------------HHHHHHHHHHHHH-TTSEEEEEEEBSCC
T ss_pred cccccCCCccEEEEhhhhHhCCHH-------------------HHHHHHHHHHHhC-cCcEEEEEeccCcc
Confidence 011124789999998776543321 2567889999999 99999997765443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=118.82 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=87.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhc-CCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRL-AGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~-~~~fD 117 (256)
.++.+|||+|||+|..++.+++. .|+.+|+++|+++.+++.|++++...++. ..++.+|+.+..+... +++||
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 128 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQA----LPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFD 128 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHH----CTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCcc
Confidence 36789999999999999888887 55679999999999999999999988874 4889999887644321 47899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++.+.. ....+++.+.++|+|||++++..
T Consensus 129 ~I~~~~~~~------------------------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 129 VLFIDAAKG------------------------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEEGGGS------------------------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred EEEECCCHH------------------------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 999976531 15788999999999999999853
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-14 Score=120.17 Aligned_cols=133 Identities=12% Similarity=0.089 Sum_probs=95.3
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCCCccEEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+.+|||||||+|.++.++++. +|+.+++++|+++.+++.|++++..... ..+++.+|+.+.+....+++||+|++
T Consensus 90 ~~rVLdIG~G~G~la~~la~~----~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADV----YPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIR 165 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHH----STTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHH----CCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence 349999999999998888876 6788999999999999999998764422 34899999988765544578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH---HHHHHHHHHcCCcEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP---SQICLQMMEKGYAARIVV 197 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~~~~g~~~~~~~ 197 (256)
+.......... .....+++.+.++|+|||++++........ ..+.+.+.+. |....++
T Consensus 166 D~~~~~~~~~~-----------------L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~~ 226 (317)
T 3gjy_A 166 DVFAGAITPQN-----------------FTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-FEHVAVI 226 (317)
T ss_dssp CCSTTSCCCGG-----------------GSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEEEEE
T ss_pred CCCCccccchh-----------------hhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH-CCceEEE
Confidence 86432111100 012578999999999999999876543322 2345555554 5544444
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=122.36 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----ce
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-----AD 98 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-----~~ 98 (256)
+..+.+++.+.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++....+.. ..
T Consensus 42 ~~~~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 112 (293)
T 3thr_A 42 TAEYKAWLLGLLR---QHGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWV 112 (293)
T ss_dssp CHHHHHHHHHHHH---HTTCCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCE
T ss_pred HHHHHHHHHHHhc---ccCCCEEEEecCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHhhhhcccccccceee
Confidence 4555566655543 246789999999999998887765 459999999999999999987554332 26
Q ss_pred EEEcchhhchhh-hcCCCccEEEEC-CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 99 LINTDIASGLEK-RLAGLVDVMVVN-PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 99 ~~~~d~~~~~~~-~~~~~fD~Ii~n-pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+..+|+.+.... +.+++||+|+++ ..+.+.++.. ........+++++.++|||||++++..+.
T Consensus 113 ~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~--------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 113 IEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSK--------------GDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSS--------------SSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EeecChhhCccccccCCCeEEEEEcChHHhhcCccc--------------cCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 788888775321 245799999997 4554433300 01123678999999999999999997764
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=114.28 Aligned_cols=119 Identities=17% Similarity=0.273 Sum_probs=85.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.+++.++.. +..+++|+|+++.+++.|++++. ..+++++|+.+. +++||+|+
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-----~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~~-----~~~~D~v~ 115 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-----GAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEI-----SGKYDTWI 115 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-----TBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGC-----CCCEEEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-----CCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHHC-----CCCeeEEE
Confidence 46789999999999998887764 22379999999999999999865 448999998874 26899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
+||||++..... ...++..+.+.+ |.++++... .....+.+.+...| ....+.
T Consensus 116 ~~~p~~~~~~~~-------------------~~~~l~~~~~~~---g~~~~~~~~-~~~~~~~~~~~~~g-~~~~~~ 168 (200)
T 1ne2_A 116 MNPPFGSVVKHS-------------------DRAFIDKAFETS---MWIYSIGNA-KARDFLRREFSARG-DVFREE 168 (200)
T ss_dssp ECCCC--------------------------CHHHHHHHHHHE---EEEEEEEEG-GGHHHHHHHHHHHE-EEEEEE
T ss_pred ECCCchhccCch-------------------hHHHHHHHHHhc---CcEEEEEcC-chHHHHHHHHHHCC-CEEEEE
Confidence 999998654311 235677777777 445554443 34567778888887 654443
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=123.32 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=97.4
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.++..+..++.+....-+.+.. +.......+.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++
T Consensus 90 l~ldg~~~~~~~de~~y~e~L~~-l~l~~~~~~~~VLdIG~G~G~~a~~la~~----~~~~~V~~VDis~~~l~~Ar~~~ 164 (334)
T 1xj5_A 90 LVLDGVIQLTERDECAYQEMITH-LPLCSIPNPKKVLVIGGGDGGVLREVARH----ASIEQIDMCEIDKMVVDVSKQFF 164 (334)
T ss_dssp EEETTEEEEETTTHHHHHHHHHH-HHHTTSSCCCEEEEETCSSSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHC
T ss_pred EEECCEeecCcCcchHHHHHHHH-HHHhhCCCCCEEEEECCCccHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHH
Confidence 45677777787763332232222 11111145789999999999987766654 45679999999999999999998
Q ss_pred HHc--CC---cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 91 EAH--NV---HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 91 ~~~--~~---~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
... ++ ..+++.+|+.+.+....+++||+|++|++-..... . + .....+++.+.++|+|
T Consensus 165 ~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~--------~--------~-l~~~~~l~~~~~~Lkp 227 (334)
T 1xj5_A 165 PDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPA--------K--------E-LFEKPFFQSVARALRP 227 (334)
T ss_dssp HHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGG--------G--------G-GGSHHHHHHHHHHEEE
T ss_pred HhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccCcc--------h--------h-hhHHHHHHHHHHhcCC
Confidence 753 33 34899999988654433578999999875211000 0 0 0136889999999999
Q ss_pred CeEEEEEE
Q 025207 166 RGWLYLVT 173 (256)
Q Consensus 166 gG~l~~~~ 173 (256)
||++++..
T Consensus 228 gG~lv~~~ 235 (334)
T 1xj5_A 228 GGVVCTQA 235 (334)
T ss_dssp EEEEEEEC
T ss_pred CcEEEEec
Confidence 99999853
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-15 Score=128.61 Aligned_cols=113 Identities=13% Similarity=0.138 Sum_probs=82.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--------------------------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-------------------------- 95 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-------------------------- 95 (256)
++++|||+|||+|.+++.++.. +++.+|+|+|+++.+++.|++++...+.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~----~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACK----WGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR 121 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHH----TCCSEEEEEESCHHHHHHHHHTC-------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHH----cCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 6899999999999999988887 5667999999999999999998765431
Q ss_pred ---------------------------------cceEEEcchhhch---hhhcCCCccEEEECCCCCCCCCcccccccch
Q 025207 96 ---------------------------------HADLINTDIASGL---EKRLAGLVDVMVVNPPYVPTPEDEVGREGIA 139 (256)
Q Consensus 96 ---------------------------------~~~~~~~d~~~~~---~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~ 139 (256)
...+.++|+.... .++..++||+|+|.....+ .+
T Consensus 122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~----------ih 191 (292)
T 3g07_A 122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKW----------VH 191 (292)
T ss_dssp --------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHH----------HH
T ss_pred ccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHH----------hh
Confidence 2378888887543 1234688999999643210 00
Q ss_pred hhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 140 SAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.. .+......+++.+.++|+|||++++..
T Consensus 192 l~-----~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 192 LN-----WGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HH-----HHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hc-----CCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 00 011246788999999999999999854
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=126.44 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=93.2
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH--
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-- 91 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-- 91 (256)
.+.+|-+.. ..++..+++.+. ..++.+|||||||+|.+++.++.. .+...++|+|+++.+++.|++++.
T Consensus 150 s~~vYGEt~--~~~i~~il~~l~---l~~gd~VLDLGCGtG~l~l~lA~~----~g~~kVvGIDiS~~~lelAr~n~e~f 220 (438)
T 3uwp_A 150 SPEVYGETS--FDLVAQMIDEIK---MTDDDLFVDLGSGVGQVVLQVAAA----TNCKHHYGVEKADIPAKYAETMDREF 220 (438)
T ss_dssp CGGGGGGTH--HHHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHHH----CCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred CCcccCCCC--HHHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 344555543 444555666543 368899999999999999988876 333369999999999999988653
Q ss_pred -----HcCC---cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025207 92 -----AHNV---HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 92 -----~~~~---~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
.+++ ..+++++|+.+......-..||+|++|++|+. + .....|.++.+.|
T Consensus 221 rkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~-p---------------------dl~~aL~Ei~RvL 278 (438)
T 3uwp_A 221 RKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFG-P---------------------EVDHQLKERFANM 278 (438)
T ss_dssp HHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTTCC-H---------------------HHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccccC-c---------------------hHHHHHHHHHHcC
Confidence 3454 34899999987632110147999999988752 1 1456677888999
Q ss_pred ccCeEEEEEE
Q 025207 164 SKRGWLYLVT 173 (256)
Q Consensus 164 kpgG~l~~~~ 173 (256)
||||++++..
T Consensus 279 KPGGrIVssE 288 (438)
T 3uwp_A 279 KEGGRIVSSK 288 (438)
T ss_dssp CTTCEEEESS
T ss_pred CCCcEEEEee
Confidence 9999999854
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-14 Score=122.41 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=108.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.+..+|||+|||+|.++..+++. +|+.+++++|+ +.+++.|++++...++. .+++.+|+.+.. +.+||+
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----p~~~D~ 238 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTA----HEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL----PAGAGG 238 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC----CCSCSE
T ss_pred CCCCEEEEeCCChhHHHHHHHHH----CCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC----CCCCcE
Confidence 34689999999999998888777 78889999999 99999999999887764 389999987432 238999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------------C
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------N 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------~ 177 (256)
|++.-.+++.+++ ....+++++++.|+|||++++..... .
T Consensus 239 v~~~~vlh~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~ 299 (332)
T 3i53_A 239 YVLSAVLHDWDDL-------------------SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKER 299 (332)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCC
T ss_pred EEEehhhccCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCC
Confidence 9996655433322 25788999999999999999976422 2
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025207 178 DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
...++.+++++.||+...+..... ..+++..
T Consensus 300 t~~e~~~ll~~aGf~~~~~~~~~~----~~vie~r 330 (332)
T 3i53_A 300 SLAELGELAAQAGLAVRAAHPISY----VSIVEMT 330 (332)
T ss_dssp CHHHHHHHHHHTTEEEEEEEECSS----SEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEEECCC----cEEEEEe
Confidence 356788899999999887775543 4555554
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-15 Score=119.65 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=94.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC-HHHHHHH---HHHHHHcCCcc-eEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN-PYAVEVT---RKTLEAHNVHA-DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~-~~~i~~a---~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~ 115 (256)
.++.+|||+|||+|.+++.+++. .+++.|+|+|+| +.+++.| ++++...++.+ .++.+|+.+.. ......
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~----~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~-~~~~d~ 97 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIN----DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP-FELKNI 97 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHT----CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC-GGGTTC
T ss_pred CCCCEEEEEeccCcHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh-hhccCe
Confidence 47889999999999998887765 678899999999 6666665 77777777754 89999988763 222367
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHH
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPS 180 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~ 180 (256)
+|.|.+++|+... ..... .....++.++.++|||||+++++..... ...
T Consensus 98 v~~i~~~~~~~~~----------~~~~~------~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 161 (225)
T 3p2e_A 98 ADSISILFPWGTL----------LEYVI------KPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKA 161 (225)
T ss_dssp EEEEEEESCCHHH----------HHHHH------TTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHH
T ss_pred EEEEEEeCCCcHH----------hhhhh------cchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChh
Confidence 8999998886320 00000 0024678999999999999998332111 111
Q ss_pred -----HHHHHHHHcCCcEEEEE
Q 025207 181 -----QICLQMMEKGYAARIVV 197 (256)
Q Consensus 181 -----~~~~~~~~~g~~~~~~~ 197 (256)
++...+.+.||.+..+.
T Consensus 162 ~~~~~el~~~l~~aGf~v~~~~ 183 (225)
T 3p2e_A 162 YFLSEQYKAELSNSGFRIDDVK 183 (225)
T ss_dssp HHHSHHHHHHHHHHTCEEEEEE
T ss_pred hcchHHHHHHHHHcCCCeeeee
Confidence 26677777888765443
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=116.14 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=83.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++.+|||+|||+|..++.++..+. ++.+|+++|+++.+++.|++++...++. .+++.+|+.+..+.. ++ ||+|
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~-fD~v 130 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAIS---ISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-RD-IDIL 130 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSC---TTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-CS-EEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-CC-CCEE
Confidence 578999999999999888877631 2679999999999999999999988874 389999988765432 45 9999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++.+.. ....+++.+.++|+|||++++..
T Consensus 131 ~~~~~~~------------------------~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 131 FMDCDVF------------------------NGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEETTTS------------------------CHHHHHHHHGGGEEEEEEEEEES
T ss_pred EEcCChh------------------------hhHHHHHHHHHhcCCCeEEEEEC
Confidence 9974311 15688999999999999998843
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-14 Score=125.45 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=93.4
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.++ +|+.... ++.+++++.+ + .++.+|||+|||+|.+++.+++. +.+|+|+|+++.+++.|++
T Consensus 263 f~~~~~~F~q~n~~~~e~l~~~~~~-~-----~~~~~VLDlgcG~G~~sl~la~~------~~~V~gvD~s~~ai~~A~~ 330 (425)
T 2jjq_A 263 YLIHPNSFFQTNSYQAVNLVRKVSE-L-----VEGEKILDMYSGVGTFGIYLAKR------GFNVKGFDSNEFAIEMARR 330 (425)
T ss_dssp EEECTTSCCCSBHHHHHHHHHHHHH-H-----CCSSEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHH
T ss_pred EEEccccccccCHHHHHHHHHHhhc-c-----CCCCEEEEeeccchHHHHHHHHc------CCEEEEEECCHHHHHHHHH
Confidence 344554 3443333 5667777766 2 46789999999999999988875 3489999999999999999
Q ss_pred HHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 89 TLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 89 ~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
|+..++++.+++.+|+.+... .+||+|++|||+... ...+++.+. .|+|+|+
T Consensus 331 n~~~ngl~v~~~~~d~~~~~~----~~fD~Vv~dPPr~g~-----------------------~~~~~~~l~-~l~p~gi 382 (425)
T 2jjq_A 331 NVEINNVDAEFEVASDREVSV----KGFDTVIVDPPRAGL-----------------------HPRLVKRLN-REKPGVI 382 (425)
T ss_dssp HHHHHTCCEEEEECCTTTCCC----TTCSEEEECCCTTCS-----------------------CHHHHHHHH-HHCCSEE
T ss_pred HHHHcCCcEEEEECChHHcCc----cCCCEEEEcCCccch-----------------------HHHHHHHHH-hcCCCcE
Confidence 999988777899999988643 289999999996311 123444444 4899999
Q ss_pred EEEEEe
Q 025207 169 LYLVTL 174 (256)
Q Consensus 169 l~~~~~ 174 (256)
+++++.
T Consensus 383 vyvsc~ 388 (425)
T 2jjq_A 383 VYVSCN 388 (425)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 999654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=117.49 Aligned_cols=106 Identities=22% Similarity=0.197 Sum_probs=86.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-----C
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-----A 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-----~ 113 (256)
.++++|||+|||+|..++.+++.+. ++++++++|+++.+++.|++++...++.. +++.+|+.+.++... .
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~ 145 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIP---DDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESE 145 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSC---TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCC
Confidence 3678999999999999999988742 26799999999999999999999988853 899999987655431 4
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++||+|+++.+. ..+..+++.+.++|+|||++++..
T Consensus 146 ~~fD~I~~d~~~------------------------~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 146 GSYDFGFVDADK------------------------PNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp TCEEEEEECSCG------------------------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCcCEEEECCch------------------------HHHHHHHHHHHHhcCCCeEEEEec
Confidence 789999997431 115688999999999999998843
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-14 Score=119.32 Aligned_cols=133 Identities=12% Similarity=0.147 Sum_probs=104.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|++ .+++.|++++...++. .+++.+|+.+. +. +..||+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-~~~~D~ 235 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQH----NPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY-GNDYDL 235 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHH----CTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC-CSCEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHH----CCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC-CCCCcE
Confidence 46789999999999998888877 678899999999 9999999999888775 38999998774 22 245999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------- 177 (256)
|++.-++++.++ .....+++.+.+.|+|||+++++.....
T Consensus 236 v~~~~~l~~~~~-------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (335)
T 2r3s_A 236 VLLPNFLHHFDV-------------------ATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTP 296 (335)
T ss_dssp EEEESCGGGSCH-------------------HHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSS
T ss_pred EEEcchhccCCH-------------------HHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCC
Confidence 999655443322 2256889999999999999998764322
Q ss_pred -----CHHHHHHHHHHcCCcEEEEEecC
Q 025207 178 -----DPSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 178 -----~~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
..+++.+++++.||....+....
T Consensus 297 ~~~~~t~~~~~~ll~~aGf~~~~~~~~~ 324 (335)
T 2r3s_A 297 NGDAYTFAEYESMFSNAGFSHSQLHSLP 324 (335)
T ss_dssp SCCCCCHHHHHHHHHHTTCSEEEEECCT
T ss_pred CCCcCCHHHHHHHHHHCCCCeeeEEECC
Confidence 25577888899999987766543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=117.54 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..++..+++.+. ..++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++..++... +++.+|
T Consensus 63 ~~~~~~~~~~l~---~~~~~~vLdiG~G~G~~~~~la~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 133 (210)
T 3lbf_A 63 PYMVARMTELLE---LTPQSRVLEIGTGSGYQTAILAHL------VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD 133 (210)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred HHHHHHHHHhcC---CCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECC
Confidence 455566666553 257899999999999999888876 4589999999999999999999888764 899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+.+.... .++||+|+++.++.+.+ ..+.++|+|||++++..+.
T Consensus 134 ~~~~~~~--~~~~D~i~~~~~~~~~~---------------------------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 134 GWQGWQA--RAPFDAIIVTAAPPEIP---------------------------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGGCCGG--GCCEEEEEESSBCSSCC---------------------------THHHHTEEEEEEEEEEECS
T ss_pred cccCCcc--CCCccEEEEccchhhhh---------------------------HHHHHhcccCcEEEEEEcC
Confidence 9876443 47899999976543221 2467899999999997754
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=124.49 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=109.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
....+|||+|||+|.++..+++. +|+.+++++|+ +.+++.|++++...++. .+++.+|+.+...++ +++||+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-p~~~D~ 251 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQY----NKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF-PTGFDA 251 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHH----STTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC-CCCCSE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHh----CCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC-CCCcCE
Confidence 46789999999999998888887 78889999999 99999999998877764 389999988752111 268999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------- 177 (256)
|++.-.++..++. ....+++++.+.|+|||+++++.....
T Consensus 252 v~~~~vlh~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (363)
T 3dp7_A 252 VWMSQFLDCFSEE-------------------EVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAM 312 (363)
T ss_dssp EEEESCSTTSCHH-------------------HHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHS
T ss_pred EEEechhhhCCHH-------------------HHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhh
Confidence 9997665543332 256889999999999999998763211
Q ss_pred --------CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025207 178 --------DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 178 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
...++.+++++.||+...+....... ..+++..+..
T Consensus 313 ~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~--~svi~~~~~~ 356 (363)
T 3dp7_A 313 ANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLG--HSILQCRLKE 356 (363)
T ss_dssp SCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTT--BEEEEEEEC-
T ss_pred hCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCC--ceEEEEeecc
Confidence 34567788888888766555443332 3455555544
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-14 Score=121.07 Aligned_cols=141 Identities=13% Similarity=0.190 Sum_probs=108.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.|++++...++. .+++.+|+.+. +. ..+|+
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~--~~~D~ 259 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKH----FPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY--PEADA 259 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHH----CTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CC--CCCSE
T ss_pred CCCCEEEEECCcccHHHHHHHHH----CCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC--CC--CCCCE
Confidence 46789999999999998888887 77889999999 99999999999888764 48999998875 22 23499
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC---------------------C-
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---------------------A- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------~- 176 (256)
|++...+++.++ .....+++++.+.|+|||+++++... .
T Consensus 260 v~~~~vlh~~~d-------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (359)
T 1x19_A 260 VLFCRILYSANE-------------------QLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPF 320 (359)
T ss_dssp EEEESCGGGSCH-------------------HHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSC
T ss_pred EEEechhccCCH-------------------HHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCC
Confidence 999766543332 12578899999999999999887621 1
Q ss_pred -----CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 177 -----NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 177 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
...+++.+++++.||+...+.... ...++++.|
T Consensus 321 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~~----~~~vi~a~k 358 (359)
T 1x19_A 321 SVLGFKEQARYKEILESLGYKDVTMVRKY----DHLLVQAVK 358 (359)
T ss_dssp CCCCCCCGGGHHHHHHHHTCEEEEEEEET----TEEEEEEEC
T ss_pred cccCCCCHHHHHHHHHHCCCceEEEEecC----CceEEEEeC
Confidence 345688899999999887766543 344555543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=118.38 Aligned_cols=105 Identities=18% Similarity=0.158 Sum_probs=86.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhc----CCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRL----AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~----~~~ 115 (256)
++.+|||+|||+|..++.++..+. ++++|+++|+++++++.|++++...++. .+++.+|+.+.+.... .++
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~ 136 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALP---DDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQ 136 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSC---TTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence 678999999999999999888642 3679999999999999999999998875 3899999987655431 478
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
||+|+++.+. .....+++.+.++|+|||++++..
T Consensus 137 fD~V~~d~~~------------------------~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 137 FDFIFIDADK------------------------TNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEEEEEESCG------------------------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EeEEEEcCCh------------------------HHhHHHHHHHHHhcCCCeEEEEEC
Confidence 9999997541 115678999999999999999843
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=121.77 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=91.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----------------CC---------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----------------NV--------- 95 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----------------~~--------- 95 (256)
++.+|||+|||+|...+.++. .++.+|+|+|+|+.|++.|++++... +.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSAC-----SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 145 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGG-----GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhc-----cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHH
Confidence 678999999999994322211 23459999999999999998865321 10
Q ss_pred -----cceEEEcchhhchh----hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025207 96 -----HADLINTDIASGLE----KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 96 -----~~~~~~~d~~~~~~----~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
...++.+|+.+..+ .+.+++||+|+++..+.+... .......++.++.++||||
T Consensus 146 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----------------~~~~~~~~l~~~~r~LkpG 208 (289)
T 2g72_A 146 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP-----------------DLASFQRALDHITTLLRPG 208 (289)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCS-----------------SHHHHHHHHHHHHTTEEEE
T ss_pred HHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcC-----------------CHHHHHHHHHHHHHhcCCC
Confidence 01466668776322 123467999999755432111 1223678899999999999
Q ss_pred eEEEEEEe---------------CCCCHHHHHHHHHHcCCcEEEEE
Q 025207 167 GWLYLVTL---------------TANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 167 G~l~~~~~---------------~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|++++... ..-..+++.+.+.+.||....+.
T Consensus 209 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 209 GHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp EEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence 99998631 11246788999999999876544
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-14 Score=121.84 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=109.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.|++++...++. .+++.+|+.+..+ ..||+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~ 252 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARR----APHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP----RKADA 252 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS----SCEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHh----CCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC----CCccE
Confidence 46789999999999998888877 67889999999 99999999999888774 4899999876432 35999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-C---------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-A--------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~--------------------- 176 (256)
|++...+++.++. ....+++++.+.|+|||+++++... .
T Consensus 253 v~~~~vl~~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (360)
T 1tw3_A 253 IILSFVLLNWPDH-------------------DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLG 313 (360)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHS
T ss_pred EEEcccccCCCHH-------------------HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcC
Confidence 9997665433321 1457899999999999999987644 1
Q ss_pred ---CCHHHHHHHHHHcCCcEEEEEecCCC--CccEEEEEEEec
Q 025207 177 ---NDPSQICLQMMEKGYAARIVVQRSTE--EENLHIIKFWRD 214 (256)
Q Consensus 177 ---~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~l~~~~~~ 214 (256)
...+++.+++++.||+...+...... .....++++.+.
T Consensus 314 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 314 GALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEeC
Confidence 12456778888899987776654322 122456666653
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-14 Score=119.56 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=82.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++. ++.+|+|+|+++.+++.++++. ....++.+|+.+.. + +++||+|+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~------~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~--~-~~~fD~v~ 122 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ------SGAEVLGTDNAATMIEKARQNY----PHLHFDVADARNFR--V-DKPLDAVF 122 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH------TTCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTTCC--C-SSCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHh------CCCeEEEEECCHHHHHHHHhhC----CCCEEEECChhhCC--c-CCCcCEEE
Confidence 4778999999999999887776 3569999999999999998765 23478899987742 2 57899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
++..+.+.++ ...++.++.++|||||++++..+..
T Consensus 123 ~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 123 SNAMLHWVKE---------------------PEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp EESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EcchhhhCcC---------------------HHHHHHHHHHhcCCCcEEEEEecCC
Confidence 9876554332 4688999999999999999977654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-14 Score=118.08 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=85.3
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH------HHHHHHHHHHHcCCc--ceEEEcc-hhhchhh
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY------AVEVTRKTLEAHNVH--ADLINTD-IASGLEK 110 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~------~i~~a~~~~~~~~~~--~~~~~~d-~~~~~~~ 110 (256)
..++.+|||+|||+|.++..++... +++++++|+|+++. +++.|++++...++. .+++.+| +.....+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~---g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 117 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQV---GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP 117 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH---CTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh---CCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC
Confidence 3578999999999999998888764 24579999999997 999999999887763 3888887 4333234
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.+++||+|+++.++.+.++ ...+++.+..+++|||++++...
T Consensus 118 ~~~~~fD~v~~~~~l~~~~~---------------------~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 118 IADQHFDRVVLAHSLWYFAS---------------------ANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp GTTCCCSEEEEESCGGGSSC---------------------HHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CCCCCEEEEEEccchhhCCC---------------------HHHHHHHHHHHhCCCCEEEEEEe
Confidence 44688999999887765443 23467777777788999999654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.7e-14 Score=130.15 Aligned_cols=168 Identities=13% Similarity=0.115 Sum_probs=113.6
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccC-------------------------------
Q 025207 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEV------------------------------- 68 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~------------------------------- 68 (256)
+.+..+.++..++..... .++..|||++||+|.++++++.+.....
T Consensus 171 ~apl~e~LAa~ll~~~~~---~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~ 247 (703)
T 3v97_A 171 IAPIKETLAAAIVMRSGW---QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTR 247 (703)
T ss_dssp CCSSCHHHHHHHHHHTTC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhCC---CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHH
Confidence 344567888887776532 4678999999999999999998753211
Q ss_pred -------CCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccch
Q 025207 69 -------PGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIA 139 (256)
Q Consensus 69 -------~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~ 139 (256)
+...|+|+|+++.+++.|+.|+..+|+.. ++.++|+.+...+...++||+|++||||...-...
T Consensus 248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~------- 320 (703)
T 3v97_A 248 ARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSE------- 320 (703)
T ss_dssp HHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CC-------
T ss_pred hhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccch-------
Confidence 23589999999999999999999999875 89999998864443334899999999996432211
Q ss_pred hhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025207 140 SAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
.....+...+....+.+.|||.++++++. .++ ....|++...-..-..+.-...++.+
T Consensus 321 -------~~l~~ly~~l~~~lk~~~~g~~~~ilt~~----~~l---~~~~glk~~k~~~l~nG~l~~~~~~y 378 (703)
T 3v97_A 321 -------PALIALHSLLGRIMKNQFGGWNLSLFSAS----PDL---LSCLQLRADKQYKAKNGPLDCVQKNY 378 (703)
T ss_dssp -------HHHHHHHHHHHHHHHHHCTTCEEEEEESC----HHH---HHTTCCCEEEEEEEEETTEEEEEEEE
T ss_pred -------hHHHHHHHHHHHHHHhhCCCCeEEEEeCC----HHH---HHHhCCCcccceeeecCCEEEEEEEE
Confidence 01111223344555566789999997642 222 23567776555554444444445444
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=116.84 Aligned_cols=106 Identities=22% Similarity=0.257 Sum_probs=86.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcC----C
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLA----G 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~----~ 114 (256)
.++.+|||+|||+|..++.+++.+. ++.+++++|+++.+++.|++++..+++. .+++.+|+.+....... +
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~ 144 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALP---ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 144 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSC---TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence 3678999999999999888877532 2679999999999999999999988873 38999998776544321 6
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+|+++++.. .+..+++.+.++|+|||++++..
T Consensus 145 ~~D~v~~d~~~~------------------------~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 145 TFDVAVVDADKE------------------------NCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp CEEEEEECSCST------------------------THHHHHHHHHHHEEEEEEEEEEC
T ss_pred CccEEEECCCHH------------------------HHHHHHHHHHHHcCCCeEEEEEC
Confidence 899999987621 15678999999999999999843
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=122.30 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=96.3
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.++..+..|+.+....-+.+.. +.-....++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++
T Consensus 86 l~ldg~~~~~~~de~~y~e~l~~-~~l~~~~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDis~~~l~~ar~~~ 160 (321)
T 2pt6_A 86 LVLDGVIQLTEKDEFAYHEMMTH-VPMTVSKEPKNVLVVGGGDGGIIRELCKY----KSVENIDICEIDETVIEVSKIYF 160 (321)
T ss_dssp EEETTEEEEETTTHHHHHHHHHH-HHHHHSSSCCEEEEEECTTCHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHC
T ss_pred EEECCEeeeCcccchHHHHHHHH-HHHhcCCCCCEEEEEcCCccHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHH
Confidence 44677778888873322232221 11000135689999999999987776653 45679999999999999999997
Q ss_pred HH--cCC---cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 91 EA--HNV---HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 91 ~~--~~~---~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
.. +++ ..+++.+|+.+.... .+++||+|++|++-...+ ...+ ....+++.+.+.|+|
T Consensus 161 ~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fDvIi~d~~~p~~~---------~~~l--------~~~~~l~~~~~~Lkp 222 (321)
T 2pt6_A 161 KNISCGYEDKRVNVFIEDASKFLEN-VTNTYDVIIVDSSDPIGP---------AETL--------FNQNFYEKIYNALKP 222 (321)
T ss_dssp TTTSGGGGSTTEEEEESCHHHHHHH-CCSCEEEEEEECCCSSSG---------GGGG--------SSHHHHHHHHHHEEE
T ss_pred HhhccccCCCcEEEEEccHHHHHhh-cCCCceEEEECCcCCCCc---------chhh--------hHHHHHHHHHHhcCC
Confidence 65 222 248999998876533 357899999987421100 0000 016789999999999
Q ss_pred CeEEEEEEe
Q 025207 166 RGWLYLVTL 174 (256)
Q Consensus 166 gG~l~~~~~ 174 (256)
||++++...
T Consensus 223 gG~lv~~~~ 231 (321)
T 2pt6_A 223 NGYCVAQCE 231 (321)
T ss_dssp EEEEEEEEC
T ss_pred CcEEEEEcC
Confidence 999999654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=135.03 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=96.9
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
++.++.++..++.+.+.+++.+. ..++.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++..+
T Consensus 133 ~~~~L~d~~~t~~~~~~il~~l~---~~~~~~VLDiGcGtG~la~~la~~-----~~~~V~gvD~s~-~l~~A~~~~~~~ 203 (480)
T 3b3j_A 133 QQNMMQDYVRTGTYQRAILQNHT---DFKDKIVLDVGCGSGILSFFAAQA-----GARKIYAVEAST-MAQHAEVLVKSN 203 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGG---GTTTCEEEEESCSTTHHHHHHHHT-----TCSEEEEEECHH-HHHHHHHHHHHT
T ss_pred chhhhcChHhHHHHHHHHHHhhh---hcCCCEEEEecCcccHHHHHHHHc-----CCCEEEEEEcHH-HHHHHHHHHHHc
Confidence 45566666667777777777653 246789999999999998877763 456999999998 999999999999
Q ss_pred CCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 94 NVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 94 ~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
++. .+++.+|+.+... +++||+|+++++.++... ......+..+.++|||||++++
T Consensus 204 gl~~~v~~~~~d~~~~~~---~~~fD~Ivs~~~~~~~~~-------------------e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 204 NLTDRIVVIPGKVEEVSL---PEQVDIIISEPMGYMLFN-------------------ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp TCTTTEEEEESCTTTCCC---SSCEEEEECCCCHHHHTC-------------------HHHHHHHHHGGGGEEEEEEEES
T ss_pred CCCCcEEEEECchhhCcc---CCCeEEEEEeCchHhcCc-------------------HHHHHHHHHHHHhcCCCCEEEE
Confidence 874 3899999987522 368999999987432211 1134556688899999999985
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=120.69 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=100.2
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+.+.+.+.+. ..++.+|||+|||+|.++..++. ++++|+|+|+++.+++.++++. +.+++.+|+
T Consensus 20 ~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~------~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~d~ 85 (261)
T 3ege_A 20 IRIVNAIINLLN---LPKGSVIADIGAGTGGYSVALAN------QGLFVYAVEPSIVMRQQAVVHP-----QVEWFTGYA 85 (261)
T ss_dssp HHHHHHHHHHHC---CCTTCEEEEETCTTSHHHHHHHT------TTCEEEEECSCHHHHHSSCCCT-----TEEEECCCT
T ss_pred HHHHHHHHHHhC---CCCCCEEEEEcCcccHHHHHHHh------CCCEEEEEeCCHHHHHHHHhcc-----CCEEEECch
Confidence 456677777654 25789999999999999877764 3679999999999998876643 448899998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-------
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------- 177 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------- 177 (256)
.+. ++.+++||+|+++..+.+.++ ...+++++.++|| ||++++......
T Consensus 86 ~~~--~~~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~ 141 (261)
T 3ege_A 86 ENL--ALPDKSVDGVISILAIHHFSH---------------------LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWL 141 (261)
T ss_dssp TSC--CSCTTCBSEEEEESCGGGCSS---------------------HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGG
T ss_pred hhC--CCCCCCEeEEEEcchHhhccC---------------------HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHH
Confidence 764 334689999999876544322 5788999999999 998887765421
Q ss_pred ----------------CHHHHHHHHHHcCCcEEEEEe
Q 025207 178 ----------------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 ----------------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....+. .+++.||....+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 142 YDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP 177 (261)
T ss_dssp GGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred HHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence 123455 88888997655543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.7e-14 Score=117.03 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=80.9
Q ss_pred CCCCEEEEecccccHHHH-HHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVIT-SLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~-~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|.++. .+++ .++++|+|+|+++++++.|++++...++.. +++++|+.+.. +++||+
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~-----~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----d~~FDv 191 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSH-----VYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----GLEFDV 191 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHH-----TTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----GCCCSE
T ss_pred CCcCEEEEECCCccHHHHHHHHH-----ccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----CCCcCE
Confidence 688999999999987653 3333 357899999999999999999999888743 89999998752 478999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|++.-. .+ ....+++++.+.|||||++++..
T Consensus 192 V~~~a~---~~---------------------d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 192 LMVAAL---AE---------------------PKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp EEECTT---CS---------------------CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEECCC---cc---------------------CHHHHHHHHHHHcCCCcEEEEEc
Confidence 998421 00 15688999999999999999865
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-14 Score=123.67 Aligned_cols=123 Identities=19% Similarity=0.216 Sum_probs=95.2
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
+.+|.|... .+.+...++..+ ++.+|||+|||+|.+++.+++. .++..|+++|+++.+++.+++|++.+
T Consensus 25 ~~F~np~~~~nr~l~~~~l~~~------~~~~VLDl~aGtG~~~l~~a~~----~~~~~V~avDi~~~av~~a~~N~~~n 94 (378)
T 2dul_A 25 PVFYNPRMALNRDIVVVLLNIL------NPKIVLDALSATGIRGIRFALE----TPAEEVWLNDISEDAYELMKRNVMLN 94 (378)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHH------CCSEEEESSCTTSHHHHHHHHH----SSCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred CceeCCchHHHHHHHHHHHHHc------CCCEEEECCCchhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 456777765 222322233332 5789999999999999999887 34568999999999999999999999
Q ss_pred ---------------CCc-ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH
Q 025207 94 ---------------NVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP 157 (256)
Q Consensus 94 ---------------~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (256)
++. .+++++|+....... .++||+|+.|||+. ...+++
T Consensus 95 ~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~-~~~fD~I~lDP~~~-------------------------~~~~l~ 148 (378)
T 2dul_A 95 FDGELRESKGRAILKGEKTIVINHDDANRLMAER-HRYFHFIDLDPFGS-------------------------PMEFLD 148 (378)
T ss_dssp CCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS-TTCEEEEEECCSSC-------------------------CHHHHH
T ss_pred cccccccccccccccCCCceEEEcCcHHHHHHhc-cCCCCEEEeCCCCC-------------------------HHHHHH
Confidence 876 489999998875432 45799999998742 246788
Q ss_pred HHhhccccCeEEEEEE
Q 025207 158 SADKLLSKRGWLYLVT 173 (256)
Q Consensus 158 ~~~~~LkpgG~l~~~~ 173 (256)
.+.+.|++||+++++.
T Consensus 149 ~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 149 TALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHhcCCCCEEEEEe
Confidence 8889999999888754
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=115.33 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=81.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++.. +++.+|+.+...++.+++||+|+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~~~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~fD~v~ 98 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN------GTRVSGIEAFPEAAEQAKEKLD------HVVLGDIETMDMPYEEEQFDCVI 98 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT------TCEEEEEESSHHHHHHHHTTSS------EEEESCTTTCCCCSCTTCEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhCC------cEEEcchhhcCCCCCCCccCEEE
Confidence 47899999999999987766553 3699999999999999887542 78888987643344457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++..+.+.++ ...++..+.++|+|||++++..+...
T Consensus 99 ~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 99 FGDVLEHLFD---------------------PWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp EESCGGGSSC---------------------HHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred ECChhhhcCC---------------------HHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 9765544332 46889999999999999999876543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.6e-15 Score=128.04 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=83.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|.+++.+++. + ..+|+|+|++ .+++.|++++..+++.. +++.+|+.+...+ ++||+
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~----g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~ 132 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---EKVDV 132 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHT----T-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---SCEEE
T ss_pred CCCCEEEEeccCcCHHHHHHHhc----C-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---CcceE
Confidence 57899999999999998888775 2 2389999999 99999999999998864 8999999876432 78999
Q ss_pred EEECCC-CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 119 MVVNPP-YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 119 Ii~npP-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
|++++. |+..... ....++..+.++|||||++++.
T Consensus 133 Iv~~~~~~~l~~e~-------------------~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 133 IISEWMGYFLLRES-------------------MFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp EEECCCBTTBTTTC-------------------THHHHHHHHHHHEEEEEEEESS
T ss_pred EEEcChhhcccchH-------------------HHHHHHHHHHhhCCCCeEEEEe
Confidence 999873 3322111 1577899999999999999863
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-15 Score=115.94 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
-+.+++.+...+ .++.+|||+|||+|.+++.++.. .|+++++|+|+|+.|++.+++++..+|...++...|
T Consensus 36 ld~fY~~~~~~l-----~~~~~VLDlGCG~GplAl~l~~~----~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d 106 (200)
T 3fzg_A 36 LNDFYTYVFGNI-----KHVSSILDFGCGFNPLALYQWNE----NEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLN 106 (200)
T ss_dssp HHHHHHHHHHHS-----CCCSEEEEETCTTHHHHHHHHCS----SCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEEC
T ss_pred HHHHHHHHHhhc-----CCCCeEEEecCCCCHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEec
Confidence 455666666665 46899999999999987766555 788999999999999999999999999886555577
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
..... .+++||+|++.--++.. +..+..+..+++.|+|||+++-
T Consensus 107 ~~~~~---~~~~~DvVLa~k~LHlL---------------------~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 107 KESDV---YKGTYDVVFLLKMLPVL---------------------KQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp CHHHH---TTSEEEEEEEETCHHHH---------------------HHTTCCHHHHHHTCEEEEEEEE
T ss_pred ccccC---CCCCcChhhHhhHHHhh---------------------hhhHHHHHHHHHHhCCCCEEEE
Confidence 65543 35789999995332211 0012335578899999998886
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-13 Score=118.27 Aligned_cols=141 Identities=17% Similarity=0.213 Sum_probs=107.1
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++++...++. .+++.+|+.+... +.++.||+|+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~D~v~ 253 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRR----HPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN-FEGGAADVVM 253 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHH----CTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG-GTTCCEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHh----CCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc-cCCCCccEEE
Confidence 799999999999998888877 78889999999 88999999999888775 3899999887641 1246799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------------------------
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------------ 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------ 176 (256)
+...+++.++. ....+++++.+.|+|||+++++....
T Consensus 254 ~~~vlh~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (352)
T 3mcz_A 254 LNDCLHYFDAR-------------------EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHG 314 (352)
T ss_dssp EESCGGGSCHH-------------------HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTC
T ss_pred EecccccCCHH-------------------HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCC
Confidence 97655433321 25788999999999999999976311
Q ss_pred --CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 177 --NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 177 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
....++.+++++.||+...... ....++.+.|
T Consensus 315 ~~~t~~e~~~ll~~aGf~~~~~~~-----g~~~l~~a~k 348 (352)
T 3mcz_A 315 ELHPTPWIAGVVRDAGLAVGERSI-----GRYTLLIGQR 348 (352)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEEEE-----TTEEEEEEEC
T ss_pred CcCCHHHHHHHHHHCCCceeeecc-----CceEEEEEec
Confidence 1245778889999998766321 2245555554
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-13 Score=106.70 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=93.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch-----hh-hcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL-----EK-RLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~-----~~-~~~~ 114 (256)
.++.+|||+|||+|.++..+++.+ .++.+++|+|+++ +++. ...+++.+|+.+.. .. ..++
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~---~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQI---GGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHH---CTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHh---CCCCeEEEEECcc-cccc---------CcEEEEEcccccchhhhhhhccCCCC
Confidence 477899999999999998888764 2457999999999 6543 12378888987652 11 3357
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
+||+|++++|+........... ........++..+.++|+|||.+++.........++...+... |...
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~~ 156 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIP----------RAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKV 156 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHH----------HHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEE
T ss_pred ceeEEEECCCccccCCCccchH----------HHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hhhE
Confidence 8999999999865443210000 0011236889999999999999999888777777777777775 5544
Q ss_pred E
Q 025207 195 I 195 (256)
Q Consensus 195 ~ 195 (256)
.
T Consensus 157 ~ 157 (180)
T 1ej0_A 157 K 157 (180)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-14 Score=115.17 Aligned_cols=105 Identities=22% Similarity=0.269 Sum_probs=85.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc--C--CC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL--A--GL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~--~--~~ 115 (256)
++.+|||+|||+|..++.++..+. ++++++++|+++.+++.|++++...++.. +++.+|+.+.+.... + ++
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~ 148 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLP---PDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE 148 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSC---TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence 578999999999999988887632 26799999999999999999999888753 889999877654432 2 68
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
||+|+++.+. ..+..+++.+.++|+|||++++..
T Consensus 149 fD~V~~d~~~------------------------~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 149 FDLIFIDADK------------------------RNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEEEECSCG------------------------GGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred cCEEEECCCH------------------------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 9999997541 115678999999999999999843
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=118.01 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=97.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-------------------------
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV------------------------- 95 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~------------------------- 95 (256)
.++.+|||+|||+|.++..++.. ++ .+|+|+|+++.+++.+++++...+.
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~----~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACE----SF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKE 129 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGG----TE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhc----cc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHH
Confidence 46789999999999976555443 33 4899999999999999988764431
Q ss_pred -----cc-eEEEcchhhchh--hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025207 96 -----HA-DLINTDIASGLE--KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 96 -----~~-~~~~~d~~~~~~--~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
.. .++.+|+.+... +...++||+|+++..+.+.+. .......++..+.++|||||
T Consensus 130 ~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~-----------------~~~~~~~~l~~~~~~LkpgG 192 (265)
T 2i62_A 130 EKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACP-----------------DLPAYRTALRNLGSLLKPGG 192 (265)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS-----------------SHHHHHHHHHHHHTTEEEEE
T ss_pred HHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcC-----------------ChHHHHHHHHHHHhhCCCCc
Confidence 14 678888877532 112278999999644321110 12236788999999999999
Q ss_pred EEEEEEeCC---------------CCHHHHHHHHHHcCCcEEEEEe
Q 025207 168 WLYLVTLTA---------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 168 ~l~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++..... -..+++.+.+.+.||....+..
T Consensus 193 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 193 FLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp EEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 999865321 1355889999999998766553
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=121.56 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=77.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-------ceEEEcchh------hch
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-------ADLINTDIA------SGL 108 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-------~~~~~~d~~------~~~ 108 (256)
++.+|||+|||+|..+..++.. ..++|+|+|+|+.|++.|+++....+.. .++.+.|+. +..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~ 122 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-----EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVR 122 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhc-----CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhh
Confidence 4789999999999754433332 2468999999999999999988765542 246677762 211
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
..+.+++||+|+|...++...+. . . ...+++++.++|||||++++.++.
T Consensus 123 ~~~~~~~FD~V~~~~~lhy~~~~--------------~-~---~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 123 EVFYFGKFNIIDWQFAIHYSFHP--------------R-H---YATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp TTCCSSCEEEEEEESCGGGTCST--------------T-T---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccCCCeeEEEECchHHHhCCH--------------H-H---HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 12335789999996443211110 0 0 468899999999999999997763
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-13 Score=115.12 Aligned_cols=142 Identities=13% Similarity=0.063 Sum_probs=96.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhc-CCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~ 118 (256)
.++.+|||+|||+|..++.++..+. ++..|+++|+++.+++.+++|++++++.+ .++.+|+.+...... ..+||.
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~---~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 177 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLK---NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHY 177 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCE
Confidence 5789999999999999999998763 34699999999999999999999999865 899999877643211 157999
Q ss_pred EEECCCCCCCCCcccccccchhhhc---CCCC---cHHHHHHHHHHHhhccccCeEEEEEEeCCCC---HHHHHHHHHHc
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWA---GGEN---GRAVIDKILPSADKLLSKRGWLYLVTLTAND---PSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~ 189 (256)
|++|||+....... +.++..|. ...+ -......++..+.++|+ ||++++++++... ...+...+.++
T Consensus 178 Vl~D~PcSg~G~~~---r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~ 253 (309)
T 2b9e_A 178 ILLDPSCSGSGMPS---RQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQN 253 (309)
T ss_dssp EEECCCCCC---------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTS
T ss_pred EEEcCCcCCCCCCc---cCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhC
Confidence 99999986433211 11111110 0011 01234567888888887 9999998876542 23445555544
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-14 Score=132.19 Aligned_cols=173 Identities=16% Similarity=0.041 Sum_probs=107.6
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH--HHHHHH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT--RKTLEA 92 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a--~~~~~~ 92 (256)
..+|+|+.....+++.+...+.. ...++.+|||+|||+|.+++.++..+... ....++|+|+++.+++.| +.|+..
T Consensus 295 GqFYTP~eLA~lMVeLA~ill~~-~l~~g~rVLDPaCGSG~FLIaaA~~l~ei-~~~~IyGvEIDp~Al~LAK~RlNL~l 372 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHILGR-PLTEDEVISDPAAGSGNLLATVSAGFNNV-MPRQIWANDIETLFLELLSIRLGLLF 372 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHHCS-CCCTTCEEEETTCTTSHHHHHHHHTSTTC-CGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred ceEcCCHHHHHHHHHHHhhhccc-cCCCCCEEEECCCCccHHHHHHHHHhccc-CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 55788865555555542221211 01357899999999999999888765321 135899999999999999 666544
Q ss_pred c----CCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhc--------CCCCcHHHHHHHHHHH
Q 025207 93 H----NVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWA--------GGENGRAVIDKILPSA 159 (256)
Q Consensus 93 ~----~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~ 159 (256)
+ +... .+...|+.... .....+||+|++||||...............++. ......+....+++.+
T Consensus 373 N~LlhGi~~~~I~~dD~L~~~-~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~A 451 (878)
T 3s1s_A 373 PQLVSSNNAPTITGEDVCSLN-PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELV 451 (878)
T ss_dssp TTTCBTTBCCEEECCCGGGCC-GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHH
T ss_pred hhhhcCCCcceEEecchhccc-ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHH
Confidence 2 3333 55556665531 1224689999999999753332111111111110 0111223567889999
Q ss_pred hhccccCeEEEEEEeCCCC------HHHHHHHHHHcC
Q 025207 160 DKLLSKRGWLYLVTLTAND------PSQICLQMMEKG 190 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~~~------~~~~~~~~~~~g 190 (256)
.++|++||++.++.+..-. ...+++.+.+..
T Consensus 452 l~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~~ 488 (878)
T 3s1s_A 452 TELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGNF 488 (878)
T ss_dssp HHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTTT
T ss_pred HHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhCC
Confidence 9999999999999875322 345666665543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=111.10 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=90.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..++. . +|+|+++.+++.++++ ...++.+|+.+. ++.+++||+|++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~---------~-~~vD~s~~~~~~a~~~------~~~~~~~d~~~~--~~~~~~fD~v~~ 108 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKI---------K-IGVEPSERMAEIARKR------GVFVLKGTAENL--PLKDESFDFALM 108 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTC---------C-EEEESCHHHHHHHHHT------TCEEEECBTTBC--CSCTTCEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHH---------H-hccCCCHHHHHHHHhc------CCEEEEcccccC--CCCCCCeeEEEE
Confidence 378999999999998654321 1 9999999999999876 347888888764 234578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----------------------C
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----------------------D 178 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------~ 178 (256)
+..+.+.++ ...+++.+.++|+|||++++..+... .
T Consensus 109 ~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 1vlm_A 109 VTTICFVDD---------------------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFS 167 (219)
T ss_dssp ESCGGGSSC---------------------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCC
T ss_pred cchHhhccC---------------------HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCC
Confidence 765543322 46889999999999999999765421 3
Q ss_pred HHHHHHHHHHcCCcEEEEEec
Q 025207 179 PSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~ 199 (256)
..++.+++++.||+...+...
T Consensus 168 ~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 168 TEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEecc
Confidence 467888999999987766544
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-14 Score=120.39 Aligned_cols=103 Identities=21% Similarity=0.320 Sum_probs=82.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++..+++. .+++.+|+.+. ++.+++||+
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~-----g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~ 134 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA-----GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV--HLPVEKVDV 134 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-----TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS--CCSCSCEEE
T ss_pred cCCCEEEEeeccCcHHHHHHHHc-----CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh--cCCCCcEEE
Confidence 57889999999999998877765 234899999997 999999999998873 38999998875 233478999
Q ss_pred EEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 119 MVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 119 Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
|++++ +|..... .....++..+.++|||||+++
T Consensus 135 Ivs~~~~~~l~~~-------------------~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 135 IISEWMGYFLLFE-------------------SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEECCCBTTBTTT-------------------CHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEcCchhhccCH-------------------HHHHHHHHHHHhhcCCCcEEE
Confidence 99987 4432211 125678999999999999998
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=115.03 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=92.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH----HHcCCcc-eEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL----EAHNVHA-DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~----~~~~~~~-~~~~~d~~~~~~~~~~~~ 115 (256)
.++.+|||+|||+|.++..++.. +|+++|+|+|+++.|++.+.++. ...+.+. .++++|+.+. ++.++.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l--~~~~~~ 99 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQ----NPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL--PPLSGV 99 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHH----CTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC--CSCCCE
T ss_pred cCCCEEEEecCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC--CCCCCC
Confidence 57899999999999999888887 77889999999999888644333 2345543 8999999875 233455
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------C---
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------D--- 178 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~--- 178 (256)
|.|+...++... ...+... ...+++++.++|||||++++...... .
T Consensus 100 -d~v~~~~~~~~~----------~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (218)
T 3mq2_A 100 -GELHVLMPWGSL----------LRGVLGS------SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDS 162 (218)
T ss_dssp -EEEEEESCCHHH----------HHHHHTS------SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHH
T ss_pred -CEEEEEccchhh----------hhhhhcc------HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHH
Confidence 888766554210 0001000 15789999999999999999542110 1
Q ss_pred -HHHHHHHHHHcCCcEEEEE
Q 025207 179 -PSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 179 -~~~~~~~~~~~g~~~~~~~ 197 (256)
.+.+...+.+.||+...+.
T Consensus 163 ~~~~l~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 163 ADEWLAPRYAEAGWKLADCR 182 (218)
T ss_dssp HHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCceeee
Confidence 1246678888898865543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-14 Score=115.05 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=85.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh--hc-CCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK--RL-AGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~--~~-~~~fD 117 (256)
.++.+|||+|||+|.++..++.. ++ +|+|+|+++.+++.|+++.. ..+..++++|+.+.... +. ...||
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~----~~--~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~d 126 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQF----FP--RVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQAAQIHSEIGDA 126 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHH----SS--CEEEEESCHHHHHHHHHHSC--CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHh----CC--CEEEEECCHHHHHHHHHhCc--ccCceEEECcccccccccccccccCcc
Confidence 47789999999999999888886 33 89999999999999998762 22348999998775322 11 13499
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+|+++..+++.+... ...++..+.++|||||+++++.....
T Consensus 127 ~v~~~~~~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 127 NIYMRTGFHHIPVEK-------------------RELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp EEEEESSSTTSCGGG-------------------HHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred EEEEcchhhcCCHHH-------------------HHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 999987776654322 57889999999999999988776544
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.8e-14 Score=117.84 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=82.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH--cCC---cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA--HNV---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~--~~~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++.. .++ ..+++.+|+.+.+.. .+++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~ 168 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKH----PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDA 168 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSC
T ss_pred CCCCEEEEECCCchHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh-CCCC
Confidence 46689999999999987766654 4567999999999999999999875 232 348999998876543 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
||+|+++++....+.. ......+++.+.++|+|||++++..
T Consensus 169 fD~Ii~d~~~~~~~~~-----------------~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 169 FDVIITDSSDPMGPAE-----------------SLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEEEECC----------------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEECCCCCCCcch-----------------hhhHHHHHHHHHhccCCCeEEEEec
Confidence 9999998874321110 0113578999999999999999865
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-14 Score=113.56 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..++..+++.+. ..++.+|||+|||+|.++..+++..+ ++.+++++|+++.+++.+++++...+... .++.+|
T Consensus 63 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 136 (215)
T 2yxe_A 63 IHMVGMMCELLD---LKPGMKVLEIGTGCGYHAAVTAEIVG---EDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGD 136 (215)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHC---TTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC
T ss_pred HHHHHHHHHhhC---CCCCCEEEEECCCccHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 445555655543 25788999999999999998888742 44699999999999999999998887654 888999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+...... .++||+|+++.++.+. ...+.++|||||+++++.+.
T Consensus 137 ~~~~~~~--~~~fD~v~~~~~~~~~---------------------------~~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 137 GTLGYEP--LAPYDRIYTTAAGPKI---------------------------PEPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GGGCCGG--GCCEEEEEESSBBSSC---------------------------CHHHHHTEEEEEEEEEEESS
T ss_pred cccCCCC--CCCeeEEEECCchHHH---------------------------HHHHHHHcCCCcEEEEEECC
Confidence 8654332 4689999998765321 24678899999999997653
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=117.62 Aligned_cols=138 Identities=15% Similarity=0.194 Sum_probs=104.2
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.|++++...++. .+++.+|+.+.. +++||+|++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~D~v~~ 239 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQA----EPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEV----PSNGDIYLL 239 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHH----CTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCC----CSSCSEEEE
T ss_pred CEEEEeCCCchHHHHHHHHH----CCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCC----CCCCCEEEE
Confidence 89999999999998888877 67889999999 99999999998766543 489999987732 357999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------------------------C
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------------N 177 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------~ 177 (256)
.-.+++.++. ....+++.+.+.|+|||++++..... .
T Consensus 240 ~~vl~~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (334)
T 2ip2_A 240 SRIIGDLDEA-------------------ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHR 300 (334)
T ss_dssp ESCGGGCCHH-------------------HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCC
T ss_pred chhccCCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCC
Confidence 7665433221 24688999999999999999975321 1
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025207 178 DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
...++.+++++.||+...+..... ...++++.
T Consensus 301 t~~e~~~ll~~aGf~~~~~~~~~~---~~~~i~~~ 332 (334)
T 2ip2_A 301 TTEEVVDLLGRGGFAVERIVDLPM---ETRMIVAA 332 (334)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEETT---TEEEEEEE
T ss_pred CHHHHHHHHHHCCCceeEEEECCC---CCEEEEEE
Confidence 245778888889998777665422 23455544
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=116.44 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=83.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----CcceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 115 (256)
.++++|||+|||+|..+..+++. .+..+++++|+++.+++.|++++...+ ...+++.+|+.+.... .+++
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~ 151 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKY----KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN-VTNT 151 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH-CCSC
T ss_pred CCCCeEEEEeCCcCHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh-CCCC
Confidence 46789999999999987666543 456799999999999999999876532 2338999999876543 2578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
||+|+++++....+... + ....+++.+.++|+|||++++...
T Consensus 152 fD~Ii~d~~~~~~~~~~---------l--------~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 152 YDVIIVDSSDPIGPAET---------L--------FNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEEEEEECCCTTTGGGG---------G--------SSHHHHHHHHHHEEEEEEEEEECC
T ss_pred ceEEEEcCCCCCCcchh---------h--------hHHHHHHHHHHhcCCCcEEEEECC
Confidence 99999987532111100 0 015889999999999999998654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.7e-14 Score=113.73 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=85.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc------
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL------ 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~------ 112 (256)
.++.+|||+|||+|..+..+++.+. ++.+|+++|+++.+++.|++++...+... .++.+|+.+..+...
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALP---EDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSC---TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccc
Confidence 3678999999999999998888732 25799999999999999999999888753 889999877544321
Q ss_pred --------C-CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 --------A-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 --------~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+ ++||+|+++... .....+++.+.++|+|||++++..
T Consensus 136 ~~~~~f~~~~~~fD~I~~~~~~------------------------~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLDADK------------------------ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGGTTTCCSTTCEEEEEECSCG------------------------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccccccCCCCCcCEEEEeCCH------------------------HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 689999997421 115678999999999999999854
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=117.77 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=80.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CC---cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NV---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++... ++ ..+++.+|+.+.+.. .+++
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~ 181 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKH----ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNE 181 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTC----TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-cCCC
Confidence 35689999999999987766654 45679999999999999999988653 22 348999999876543 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
||+|+++++....+.. . .....+++.+.++|+|||++++..
T Consensus 182 fD~Ii~d~~~~~~~~~----------------~-l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 182 FDVIITDSSDPVGPAE----------------S-LFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EEEEEECCC------------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred ceEEEEcCCCCCCcch----------------h-hhHHHHHHHHHhhcCCCeEEEEEC
Confidence 9999998753211000 0 012688999999999999999854
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-13 Score=110.94 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=93.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CC---cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NV---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++|||+|||+|.++.++++. .+..+|+++|+++.+++.|++++... ++ ..+++.+|+.+.+.. .+++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~ 148 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKH----PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQ 148 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTC----TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-CCSC
T ss_pred CCCCEEEEECCchHHHHHHHHhC----CCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-CCCC
Confidence 35789999999999987666543 45579999999999999999987642 33 238999998876543 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CH---HHHHHHHHHcCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DP---SQICLQMMEKGY 191 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~---~~~~~~~~~~g~ 191 (256)
||+|+++++....+... + ....+++.+.+.|+|||++++...+.. .. ..+.+.+++. |
T Consensus 149 fD~Ii~d~~~~~~~~~~---------l--------~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F 210 (275)
T 1iy9_A 149 YDVIMVDSTEPVGPAVN---------L--------FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-F 210 (275)
T ss_dssp EEEEEESCSSCCSCCCC---------C--------STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-C
T ss_pred eeEEEECCCCCCCcchh---------h--------hHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-C
Confidence 99999998763221100 0 024778999999999999998653321 12 2444555554 5
Q ss_pred cEEEEE
Q 025207 192 AARIVV 197 (256)
Q Consensus 192 ~~~~~~ 197 (256)
.....+
T Consensus 211 ~~v~~~ 216 (275)
T 1iy9_A 211 PITKLY 216 (275)
T ss_dssp SEEEEE
T ss_pred CCeEEE
Confidence 544433
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-14 Score=120.71 Aligned_cols=114 Identities=14% Similarity=0.164 Sum_probs=89.4
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.+.+.+++.+. ..++.+|||+|||+|.+++.+++... .+.+|+|+|+++++++.|++++..+++.. +++.+|+
T Consensus 62 ~~~~~l~~~l~---~~~~~~VLDiGcG~G~~~~~la~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~ 135 (317)
T 1dl5_A 62 SLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVG---EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG 135 (317)
T ss_dssp HHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG
T ss_pred HHHHHHHHhcC---CCCcCEEEEecCCchHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECCh
Confidence 45566666553 25789999999999999998888732 13579999999999999999999888764 8999998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+.... .++||+|++++++.+. .+.+.+.|||||++++...
T Consensus 136 ~~~~~~--~~~fD~Iv~~~~~~~~---------------------------~~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 136 YYGVPE--FSPYDVIFVTVGVDEV---------------------------PETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GGCCGG--GCCEEEEEECSBBSCC---------------------------CHHHHHHEEEEEEEEEEBC
T ss_pred hhcccc--CCCeEEEEEcCCHHHH---------------------------HHHHHHhcCCCcEEEEEEC
Confidence 875432 4689999998876422 1456789999999999653
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-14 Score=117.62 Aligned_cols=104 Identities=22% Similarity=0.286 Sum_probs=81.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++++........++.+|+.+. ++.+++||+|+
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~ 109 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR------GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI--PLPDESVHGVI 109 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT------TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC--CSCTTCEEEEE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC--CCCCCCeeEEE
Confidence 46789999999999998777654 46899999999999999998722222348999998765 23457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++..+.+.++ ...++.++.++|+|||++++..
T Consensus 110 ~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 110 VVHLWHLVPD---------------------WPKVLAEAIRVLKPGGALLEGW 141 (263)
T ss_dssp EESCGGGCTT---------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCchhhcCC---------------------HHHHHHHHHHHCCCCcEEEEEe
Confidence 9766544332 4688999999999999999863
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-14 Score=114.33 Aligned_cols=112 Identities=24% Similarity=0.202 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++.. . .+++|+|+++.+++.+++++..++ ...++.+|+
T Consensus 56 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~----~--~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~ 125 (231)
T 1vbf_A 56 LNLGIFMLDELD---LHKGQKVLEIGTGIGYYTALIAEI----V--DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDG 125 (231)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHH----S--SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCG
T ss_pred HHHHHHHHHhcC---CCCCCEEEEEcCCCCHHHHHHHHH----c--CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCc
Confidence 455666666553 257789999999999999888876 2 589999999999999999987766 558999998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.+... .+++||+|+++.++.+. ...+.++|+|||++++..+.
T Consensus 126 ~~~~~--~~~~fD~v~~~~~~~~~---------------------------~~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 126 TLGYE--EEKPYDRVVVWATAPTL---------------------------LCKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp GGCCG--GGCCEEEEEESSBBSSC---------------------------CHHHHHTEEEEEEEEEEECS
T ss_pred ccccc--cCCCccEEEECCcHHHH---------------------------HHHHHHHcCCCcEEEEEEcC
Confidence 77433 24789999998765321 23577899999999997653
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-14 Score=123.88 Aligned_cols=105 Identities=15% Similarity=0.234 Sum_probs=83.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++..+++.. +++.+|+.+. ++.+++||+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-----g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~ 136 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-----GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV--ELPVEKVDI 136 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-----TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CCSSSCEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHC-----CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc--cCCCCceEE
Confidence 47899999999999998888775 345999999995 9999999999998864 8999999886 333579999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|+++++.+..... .....++..+.++|||||+++.
T Consensus 137 Iis~~~~~~l~~~------------------~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 137 IISEWMGYCLFYE------------------SMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EEECCCBBTBTBT------------------CCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEccccccccCc------------------hhHHHHHHHHHHhCCCCCEEcc
Confidence 9998753322111 1157889999999999999864
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=118.38 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=87.7
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcc
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d 103 (256)
.+.+.+.+.+. ..++.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++..+++. .+++.+|
T Consensus 37 ~y~~~i~~~l~---~~~~~~VLDiGcGtG~ls~~la~~-----g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d 107 (348)
T 2y1w_A 37 TYQRAILQNHT---DFKDKIVLDVGCGSGILSFFAAQA-----GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGK 107 (348)
T ss_dssp HHHHHHHHTGG---GTTTCEEEEETCTTSHHHHHHHHT-----TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HHHHHHHhccc---cCCcCEEEEcCCCccHHHHHHHhC-----CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcc
Confidence 34444544442 247899999999999998877764 345999999996 889999999998874 3899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+.+... +++||+|++++++.+..... ....+..+.++|||||++++.
T Consensus 108 ~~~~~~---~~~~D~Ivs~~~~~~~~~~~-------------------~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 108 VEEVSL---PEQVDIIISEPMGYMLFNER-------------------MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TTTCCC---SSCEEEEEECCCBTTBTTTS-------------------HHHHHHHGGGGEEEEEEEESC
T ss_pred hhhCCC---CCceeEEEEeCchhcCChHH-------------------HHHHHHHHHhhcCCCeEEEEe
Confidence 887532 36899999998765433221 456677889999999999864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-14 Score=114.40 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=83.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhc-ccCCCceEEEEeCCHHHHHHHHHHHHHcC-----Cc-ceEEEcchhhchhh--h
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLG-QEVPGVQYIATDINPYAVEVTRKTLEAHN-----VH-ADLINTDIASGLEK--R 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~-~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~-~~~~~~d~~~~~~~--~ 111 (256)
.++.+|||+|||+|.++..+++.+. ...+.++|+++|+++.+++.|++++..++ .. ..++.+|+.+.... .
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 4779999999999999998888742 11145699999999999999999998887 33 38999998875310 1
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
..++||+|+++.++. .+++.+.+.|+|||++++..+.
T Consensus 159 ~~~~fD~I~~~~~~~---------------------------~~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 159 ELGLFDAIHVGASAS---------------------------ELPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHCCEEEEEECSBBS---------------------------SCCHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchH---------------------------HHHHHHHHhcCCCcEEEEEEcc
Confidence 246899999987642 2346678899999999997653
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-14 Score=114.78 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..++..+++.+. ..++.+|||+|||+|.++..+++.. + .+|+++|+++.+++.|++++...++.. .+..+|
T Consensus 77 ~~~~~~~~~~l~---~~~~~~vLdiG~G~G~~~~~la~~~----~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 148 (235)
T 1jg1_A 77 PHMVAIMLEIAN---LKPGMNILEVGTGSGWNAALISEIV----K-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGD 148 (235)
T ss_dssp HHHHHHHHHHHT---CCTTCCEEEECCTTSHHHHHHHHHH----C-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred HHHHHHHHHhcC---CCCCCEEEEEeCCcCHHHHHHHHHh----C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 445566666553 2577899999999999999888873 3 589999999999999999999888754 888999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+....+. .+.||+|+++.+... +...+.+.|+|||++++..+..
T Consensus 149 ~~~~~~~--~~~fD~Ii~~~~~~~---------------------------~~~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 149 GSKGFPP--KAPYDVIIVTAGAPK---------------------------IPEPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp GGGCCGG--GCCEEEEEECSBBSS---------------------------CCHHHHHTEEEEEEEEEEECSS
T ss_pred cccCCCC--CCCccEEEECCcHHH---------------------------HHHHHHHhcCCCcEEEEEEecC
Confidence 7443322 246999999865421 1235778999999999977543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=115.10 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=90.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH--cCC---cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA--HNV---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~--~~~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++.. .++ ..+++.+|+.+.... .+++
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~ 163 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKH----DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK-FKNE 163 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTS----TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-CSSC
T ss_pred CCCCEEEEEcCCcCHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-CCCC
Confidence 35689999999999987776654 4567999999999999999999864 222 348999998876543 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-CCH---HHHHHHHHHcCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-NDP---SQICLQMMEKGY 191 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~---~~~~~~~~~~g~ 191 (256)
||+|++++|........ . .....+++.+.++|+|||++++...+. ... ..+.+.+.+. |
T Consensus 164 fD~Ii~d~~~~~~~~~~--------~--------l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F 226 (296)
T 1inl_A 164 FDVIIIDSTDPTAGQGG--------H--------LFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-F 226 (296)
T ss_dssp EEEEEEEC--------------------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-C
T ss_pred ceEEEEcCCCcccCchh--------h--------hhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-C
Confidence 99999987632010000 0 012578899999999999999965432 112 3445555555 4
Q ss_pred cEEE
Q 025207 192 AARI 195 (256)
Q Consensus 192 ~~~~ 195 (256)
....
T Consensus 227 ~~v~ 230 (296)
T 1inl_A 227 PITR 230 (296)
T ss_dssp SEEE
T ss_pred CceE
Confidence 4433
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=109.87 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=80.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|.++..+ +. +++|+|+++.+++.++++. ....++.+|+.+. ++.+++||+|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---------~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~--~~~~~~fD~v~ 100 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---------PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEAL--PFPGESFDVVL 100 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---------CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSC--CSCSSCEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC---------CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccC--CCCCCcEEEEE
Confidence 7899999999999976443 34 8999999999999998875 2337888888765 33457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
++..+.+.++ ...++.++.++|||||++++..+....
T Consensus 101 ~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 101 LFTTLEFVED---------------------VERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp EESCTTTCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred EcChhhhcCC---------------------HHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 9877655432 468899999999999999998876543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-14 Score=113.58 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=82.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC------cceEEEcchhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV------HADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~~ 114 (256)
.++.+|||+|||+|.++..+++.++ +..+|+++|+++.+++.+++++..++. ...++.+|+..... ..+
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~ 150 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVG---CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA--EEA 150 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG--GGC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc--cCC
Confidence 5788999999999999998888752 446999999999999999999988664 34888999875432 246
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+||+|+++.++. .++..+.+.|||||++++..+.
T Consensus 151 ~fD~i~~~~~~~---------------------------~~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 151 PYDAIHVGAAAP---------------------------VVPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CEEEEEECSBBS---------------------------SCCHHHHHTEEEEEEEEEEESC
T ss_pred CcCEEEECCchH---------------------------HHHHHHHHhcCCCcEEEEEEec
Confidence 899999987642 2345778899999999997653
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-13 Score=108.77 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=78.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. ++ +++|+|+++.+++.|+++.. ...++.+|+.+.. . +++||+|+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~----~~--~v~~~D~s~~~~~~a~~~~~----~~~~~~~d~~~~~--~-~~~~D~v~ 105 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKE----FG--DTAGLELSEDMLTHARKRLP----DATLHQGDMRDFR--L-GRKFSAVV 105 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHH----HS--EEEEEESCHHHHHHHHHHCT----TCEEEECCTTTCC--C-SSCEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHh----CC--cEEEEeCCHHHHHHHHHhCC----CCEEEECCHHHcc--c-CCCCcEEE
Confidence 46789999999999999888876 22 89999999999999988641 2488899987753 2 57899999
Q ss_pred ECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 121 VNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|.. .+.+... ......+++.+.++|+|||++++..
T Consensus 106 ~~~~~~~~~~~------------------~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 106 SMFSSVGYLKT------------------TEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp ECTTGGGGCCS------------------HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred EcCchHhhcCC------------------HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 632 3222211 1236788999999999999999853
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=124.46 Aligned_cols=165 Identities=13% Similarity=0.098 Sum_probs=109.1
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC---------CceEEEEeCCHHHHHH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP---------GVQYIATDINPYAVEV 85 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~---------~~~v~giD~~~~~i~~ 85 (256)
..+|+|++...++++.+ . +.++.+|+|++||+|.+++.+...+.+... ...++|+|+++.++..
T Consensus 197 GqfyTP~~Vv~lmv~l~----~---p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~l 269 (530)
T 3ufb_A 197 GEFYTPRPVVRFMVEVM----D---PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLL 269 (530)
T ss_dssp CCCCCCHHHHHHHHHHH----C---CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHH
T ss_pred ceECCcHHHHHHHHHhh----c---cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHH
Confidence 46899976665555543 2 246789999999999999998887754432 2469999999999999
Q ss_pred HHHHHHHcCCcc-eEEEcchhhchh-h-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhc
Q 025207 86 TRKTLEAHNVHA-DLINTDIASGLE-K-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKL 162 (256)
Q Consensus 86 a~~~~~~~~~~~-~~~~~d~~~~~~-~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (256)
|+-|+..++... ++..+|...... . ....+||+|++||||............+. .....+ ....++..+.+.
T Consensus 270 a~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~--~~~~~~---~~~~Fl~~~l~~ 344 (530)
T 3ufb_A 270 VQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPE--DMQTAE---TAMLFLQLIMRK 344 (530)
T ss_dssp HHHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCG--GGCCCB---HHHHHHHHHHHH
T ss_pred HHHHHHhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCch--hcccch---hHHHHHHHHHHH
Confidence 999999999875 788888764321 1 12357999999999975433221110000 011111 123455556666
Q ss_pred cc-------cCeEEEEEEeCC----C-CHHHHHHHHHHcCC
Q 025207 163 LS-------KRGWLYLVTLTA----N-DPSQICLQMMEKGY 191 (256)
Q Consensus 163 Lk-------pgG~l~~~~~~~----~-~~~~~~~~~~~~g~ 191 (256)
|| +||++.++.|.. . ....+++.+.+.+.
T Consensus 345 Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~~~ 385 (530)
T 3ufb_A 345 LKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKNFN 385 (530)
T ss_dssp BCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHHSE
T ss_pred hhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhcCE
Confidence 65 799999988742 1 23457777766543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=115.50 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=81.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CC----------cceEEEcchhhch
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NV----------HADLINTDIASGL 108 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~----------~~~~~~~d~~~~~ 108 (256)
..+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++ .. ++ ..+++.+|+.+.+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-----~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l 147 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-----DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFI 147 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-----CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHh
Confidence 35789999999999987665543 4569999999999999999988 33 22 2389999988765
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.. +++||+|++++|....+... .....+++.+.++|+|||++++...
T Consensus 148 ~~--~~~fD~Ii~d~~~~~~~~~~-----------------l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 148 KN--NRGFDVIIADSTDPVGPAKV-----------------LFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp HH--CCCEEEEEEECCCCC----------------------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc--cCCeeEEEECCCCCCCcchh-----------------hhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 44 57899999998753211000 0125788999999999999998654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=121.39 Aligned_cols=126 Identities=15% Similarity=0.245 Sum_probs=93.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--e-EEEcchhhchhhhcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--D-LINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~-~~~~d~~~~~~~~~~~~fD 117 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.|+++ +... . +...+.... ++.+++||
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~------g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l--~~~~~~fD 173 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA------GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDV--RRTEGPAN 173 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT------TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHH--HHHHCCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHc------CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhc--ccCCCCEE
Confidence 57789999999999988777664 45999999999999998875 3332 1 222233222 23358999
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------------------CC
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-------------------ND 178 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------------~~ 178 (256)
+|+++-.+.+.++ ...+++.+.++|||||++++..+.. ..
T Consensus 174 ~I~~~~vl~h~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s 232 (416)
T 4e2x_A 174 VIYAANTLCHIPY---------------------VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFS 232 (416)
T ss_dssp EEEEESCGGGCTT---------------------HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECC
T ss_pred EEEECChHHhcCC---------------------HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCC
Confidence 9999876654432 5788999999999999999976531 13
Q ss_pred HHHHHHHHHHcCCcEEEEEec
Q 025207 179 PSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~ 199 (256)
..++...+++.||....+...
T Consensus 233 ~~~l~~ll~~aGf~~~~~~~~ 253 (416)
T 4e2x_A 233 ATSVQGMAQRCGFELVDVQRL 253 (416)
T ss_dssp HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEEc
Confidence 468899999999988766553
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.4e-13 Score=112.33 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=92.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH--cC----CcceEEEcchhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA--HN----VHADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~--~~----~~~~~~~~d~~~~~~~~~~~ 114 (256)
..+++|||+|||+|.++..+++. .+..+++++|+++.+++.|++++.. .+ ...+++.+|+.+.+.. .++
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 150 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKH----PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEE 150 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS----TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh-cCC
Confidence 45689999999999987666554 4567999999999999999998764 12 2348999999886543 357
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----CCHHHHHHHHHHc
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-----NDPSQICLQMMEK 189 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----~~~~~~~~~~~~~ 189 (256)
+||+|+++++....... +.. ......+++.+.++|+|||++++..... .....+.+.+++.
T Consensus 151 ~fD~Ii~d~~~~~~~~~------~~~--------~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~ 216 (314)
T 1uir_A 151 RYDVVIIDLTDPVGEDN------PAR--------LLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA 216 (314)
T ss_dssp CEEEEEEECCCCBSTTC------GGG--------GGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT
T ss_pred CccEEEECCCCcccccC------cch--------hccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH
Confidence 89999999765320000 000 0013678999999999999999864321 1123445555544
Q ss_pred CCcEE
Q 025207 190 GYAAR 194 (256)
Q Consensus 190 g~~~~ 194 (256)
|...
T Consensus 217 -F~~v 220 (314)
T 1uir_A 217 -FRYV 220 (314)
T ss_dssp -CSEE
T ss_pred -CCce
Confidence 4443
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=118.04 Aligned_cols=128 Identities=18% Similarity=0.162 Sum_probs=94.5
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHH
Q 025207 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~ 92 (256)
..+|.|... .+.++..++..+.. ...++.+|||++||+|.+++.++..+ ++ ..|+++|+++.+++.+++|++.
T Consensus 25 ~~Ffn~~~~~nR~l~~~~~~~~~~-~~~~g~~VLDlfaGtG~~sl~aa~~~----~ga~~V~avDi~~~av~~~~~N~~~ 99 (392)
T 3axs_A 25 PVFYNPRMRVNRDLAVLGLEYLCK-KLGRPVKVADPLSASGIRAIRFLLET----SCVEKAYANDISSKAIEIMKENFKL 99 (392)
T ss_dssp CSSCCGGGHHHHHHHHHHHHHHHH-HHCSCEEEEESSCTTSHHHHHHHHHC----SCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHHHHhh-ccCCCCEEEECCCcccHHHHHHHHhC----CCCCEEEEEECCHHHHHHHHHHHHH
Confidence 456656544 33333333333210 01367899999999999999998863 23 4899999999999999999999
Q ss_pred cCCc---ceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 93 HNVH---ADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 93 ~~~~---~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
|++. .+++++|+.+.+. .. .++||+|++|| |.. ...++..+.++|++||+
T Consensus 100 Ngl~~~~v~v~~~Da~~~l~~~~-~~~fD~V~lDP-~g~------------------------~~~~l~~a~~~Lk~gGl 153 (392)
T 3axs_A 100 NNIPEDRYEIHGMEANFFLRKEW-GFGFDYVDLDP-FGT------------------------PVPFIESVALSMKRGGI 153 (392)
T ss_dssp TTCCGGGEEEECSCHHHHHHSCC-SSCEEEEEECC-SSC------------------------CHHHHHHHHHHEEEEEE
T ss_pred hCCCCceEEEEeCCHHHHHHHhh-CCCCcEEEECC-CcC------------------------HHHHHHHHHHHhCCCCE
Confidence 9985 5799999988765 43 46799999998 310 13578888889999998
Q ss_pred EEEEE
Q 025207 169 LYLVT 173 (256)
Q Consensus 169 l~~~~ 173 (256)
+++++
T Consensus 154 l~~t~ 158 (392)
T 3axs_A 154 LSLTA 158 (392)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88865
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-13 Score=116.20 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=81.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. +..+|+|+|++ .+++.|++++..+++.. +++.+|+.+.. ...++||+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-----g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 108 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-----GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--LPFPKVDI 108 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-----CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--CSSSCEEE
T ss_pred cCCCEEEEecCccHHHHHHHHHC-----CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--CCCCcccE
Confidence 46789999999999998877764 23489999999 59999999999988753 89999988753 22478999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
|+++++.+..... .....++..+.++|||||+++
T Consensus 109 Ivs~~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 109 IISEWMGYFLLYE------------------SMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEECCCBTTBSTT------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEeCchhhcccH------------------HHHHHHHHHHHhhcCCCeEEE
Confidence 9999774332111 115678899999999999997
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=119.27 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH-------HHHHHHcCC--
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT-------RKTLEAHNV-- 95 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a-------~~~~~~~~~-- 95 (256)
..++..+++.+. ..++.+|||+|||+|.+++.+++.. +..+|+|+|+++.+++.| ++++...++
T Consensus 228 p~~v~~ml~~l~---l~~g~~VLDLGCGsG~la~~LA~~~----g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~ 300 (433)
T 1u2z_A 228 PNFLSDVYQQCQ---LKKGDTFMDLGSGVGNCVVQAALEC----GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRL 300 (433)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEESCTTSHHHHHHHHHH----CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred HHHHHHHHHhcC---CCCCCEEEEeCCCcCHHHHHHHHHC----CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCC
Confidence 344455555543 2578999999999999999988873 345899999999999998 888888883
Q ss_pred cc-eEEEcchh-hchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 96 HA-DLINTDIA-SGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 96 ~~-~~~~~d~~-~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.. +++++|.. .... ....++||+|++|...+. ......+..+.+.|||||++++.
T Consensus 301 ~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~----------------------~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 301 NNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFD----------------------EDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp CCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCC----------------------HHHHHHHHHHHTTCCTTCEEEES
T ss_pred CceEEEEcCccccccccccccCCCCEEEEeCcccc----------------------ccHHHHHHHHHHhCCCCeEEEEe
Confidence 33 77777543 2111 011368999999754321 12456788999999999999985
Q ss_pred E
Q 025207 173 T 173 (256)
Q Consensus 173 ~ 173 (256)
.
T Consensus 359 d 359 (433)
T 1u2z_A 359 K 359 (433)
T ss_dssp S
T ss_pred e
Confidence 3
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=103.38 Aligned_cols=129 Identities=9% Similarity=0.062 Sum_probs=84.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC--CceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch----------
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP--GVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL---------- 108 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~--~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~---------- 108 (256)
.++.+|||+|||+|.++..+++. .+ +++|+|+|+++.+ ......++++|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~----~~~~~~~v~gvD~s~~~----------~~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILER----TKNYKNKIIGIDKKIMD----------PIPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHH----TTTSCEEEEEEESSCCC----------CCTTCEEEECCTTTTSSCCC------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHH----cCCCCceEEEEeCCccC----------CCCCceEEEccccchhhhhhcccccc
Confidence 46789999999999999988887 44 5799999999831 0112378888887643
Q ss_pred -------------hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 109 -------------EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 109 -------------~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
..+.+++||+|++++++....... .... ........++..+.++|||||.+++....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~-----~d~~-----~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKI-----DDHL-----NSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHH-----HHHH-----HHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcc-----cCHH-----HHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 012346899999987654321100 0000 00112345788999999999999986665
Q ss_pred CCCHHHHHHHHHHcCCcEE
Q 025207 176 ANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 176 ~~~~~~~~~~~~~~g~~~~ 194 (256)
.....++...+.. .|...
T Consensus 157 ~~~~~~l~~~l~~-~f~~v 174 (201)
T 2plw_A 157 GSQTNNLKTYLKG-MFQLV 174 (201)
T ss_dssp STTHHHHHHHHHT-TEEEE
T ss_pred CCCHHHHHHHHHH-HHheE
Confidence 5555666666655 34433
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.9e-14 Score=113.68 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=84.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc--hhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG--LEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~fD~I 119 (256)
++.+|||+|||+|..++.+++.+...+++++|+|+|+++.+++.|+. .....+++++|+.+. ++.....+||+|
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 46899999999999999888863222467899999999999988761 122348999998774 222223479999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh-ccccCeEEEEEEe----CCCCHHHHHHHHHHc
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK-LLSKRGWLYLVTL----TANDPSQICLQMMEK 189 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~----~~~~~~~~~~~~~~~ 189 (256)
+++.... ....++..+.+ +|||||++++... .......+.++++..
T Consensus 157 ~~d~~~~------------------------~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~ 207 (236)
T 2bm8_A 157 FIDNAHA------------------------NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAF 207 (236)
T ss_dssp EEESSCS------------------------SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTT
T ss_pred EECCchH------------------------hHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhC
Confidence 9864410 14678888996 9999999998431 011223556666655
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=126.27 Aligned_cols=123 Identities=23% Similarity=0.171 Sum_probs=91.6
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccC-CCceEEEEeCCHHHHHHHHHHHHHc------CCc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEV-PGVQYIATDINPYAVEVTRKTLEAH------NVH 96 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~-~~~~v~giD~~~~~i~~a~~~~~~~------~~~ 96 (256)
....++++++.+.. .++.+|||+|||+|.+++.+++. + +..+|+|+|+++.+++.|++++... +..
T Consensus 706 ~eqRle~LLelL~~---~~g~rVLDVGCGTG~lai~LAr~----g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~ 778 (950)
T 3htx_A 706 SKQRVEYALKHIRE---SSASTLVDFGCGSGSLLDSLLDY----PTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778 (950)
T ss_dssp HHHHHHHHHHHHHH---SCCSEEEEETCSSSHHHHHHTSS----CCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS
T ss_pred HHHHHHHHHHHhcc---cCCCEEEEECCCCCHHHHHHHHh----CCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC
Confidence 45556666666542 47899999999999987666654 4 3469999999999999999977642 333
Q ss_pred -ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 97 -ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 97 -~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.+++++|+.+.. ..+++||+|+++..+.+.++. ....+++.+.++|||| .+++.++.
T Consensus 779 nVefiqGDa~dLp--~~d~sFDlVV~~eVLeHL~dp-------------------~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 779 SATLYDGSILEFD--SRLHDVDIGTCLEVIEHMEED-------------------QACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEEEEESCTTSCC--TTSCSCCEEEEESCGGGSCHH-------------------HHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred ceEEEECchHhCC--cccCCeeEEEEeCchhhCChH-------------------HHHHHHHHHHHHcCCC-EEEEEecC
Confidence 389999998763 335889999997666544432 1457899999999999 77776643
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=114.10 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=78.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..++.. +.+++|+|+++.+++.|+++.. . .++.+|+.+.. +.+++||+|++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~----~-~~~~~d~~~~~--~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGV----K-NVVEAKAEDLP--FPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTC----S-CEEECCTTSCC--SCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHc------CCeEEEEeCCHHHHHHHHhhcC----C-CEEECcHHHCC--CCCCCEEEEEE
Confidence 6789999999999988776654 4589999999999999988753 1 38888887652 34578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
..+..+... ....+++++.++|||||++++..++
T Consensus 121 ~~~~~~~~~--------------------~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 121 LGDVLSYVE--------------------NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp CSSHHHHCS--------------------CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cchhhhccc--------------------cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 643221110 0568899999999999999997764
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-12 Score=108.31 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=84.9
Q ss_pred CCCEEEEecccc---cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh---------
Q 025207 42 HPVLCMEVGCGS---GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--------- 109 (256)
Q Consensus 42 ~~~~VLDlGcG~---G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--------- 109 (256)
...+|||+|||+ |.++..+... .|+++|+++|+|+.|++.|++++... -...++.+|+.+...
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~----~p~~~v~~vD~sp~~l~~Ar~~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~ 151 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSV----NPDARVVYVDIDPMVLTHGRALLAKD-PNTAVFTADVRDPEYILNHPDVRR 151 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHH----CTTCEEEEEESSHHHHHHHHHHHTTC-TTEEEEECCTTCHHHHHHSHHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHh----CCCCEEEEEECChHHHHHHHHhcCCC-CCeEEEEeeCCCchhhhccchhhc
Confidence 458999999999 9876544444 67889999999999999999987432 234899999876421
Q ss_pred hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 110 KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.+...+||+|+++..+++.++.+ ...+++++.+.|+|||++++......
T Consensus 152 ~~d~~~~d~v~~~~vlh~~~d~~-------------------~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 152 MIDFSRPAAIMLVGMLHYLSPDV-------------------VDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp HCCTTSCCEEEETTTGGGSCTTT-------------------HHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred cCCCCCCEEEEEechhhhCCcHH-------------------HHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 11125899999987666544422 57889999999999999999876553
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-13 Score=113.68 Aligned_cols=121 Identities=19% Similarity=0.201 Sum_probs=87.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-------C-cceEEEcchhhchh--hh
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-------V-HADLINTDIASGLE--KR 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-------~-~~~~~~~d~~~~~~--~~ 111 (256)
++.+|||+|||+|.++..++.. +..+++|+|+++.+++.|+++....+ . ...++++|+.+... ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 108 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-----RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKF 108 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhc-----CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhc
Confidence 6789999999999988776653 35699999999999999999887642 1 34899999887531 12
Q ss_pred --cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHH
Q 025207 112 --LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMM 187 (256)
Q Consensus 112 --~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 187 (256)
.+++||+|+++..++.... .......++.++.++|||||.+++.++.. .++...+.
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~-----------------~~~~~~~~l~~~~~~LkpgG~li~~~~~~---~~l~~~~~ 166 (313)
T 3bgv_A 109 RDPQMCFDICSCQFVCHYSFE-----------------SYEQADMMLRNACERLSPGGYFIGTTPNS---FELIRRLE 166 (313)
T ss_dssp SSTTCCEEEEEEETCGGGGGG-----------------SHHHHHHHHHHHHTTEEEEEEEEEEEECH---HHHHHHHT
T ss_pred ccCCCCEEEEEEecchhhccC-----------------CHHHHHHHHHHHHHHhCCCcEEEEecCCh---HHHHHHHH
Confidence 2358999999765432200 11235688999999999999999987643 34444443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-13 Score=113.21 Aligned_cols=105 Identities=13% Similarity=0.242 Sum_probs=81.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. .++.+++|+|+++.+++.|+++. ....+..+|+.+. ++.+++||+|+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~--~~~~~~fD~v~ 153 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADA----LPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRL--PFSDTSMDAII 153 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHT----CTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSC--SBCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhC--CCCCCceeEEE
Confidence 47889999999999998877776 45679999999999999998764 2347888888764 23457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
++.. ..++.++.++|||||+++++.+......++.
T Consensus 154 ~~~~----------------------------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~ 188 (269)
T 1p91_A 154 RIYA----------------------------PCKAEELARVVKPGGWVITATPGPRHLMELK 188 (269)
T ss_dssp EESC----------------------------CCCHHHHHHHEEEEEEEEEEEECTTTTHHHH
T ss_pred EeCC----------------------------hhhHHHHHHhcCCCcEEEEEEcCHHHHHHHH
Confidence 8532 1237888999999999999888766544433
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=105.36 Aligned_cols=126 Identities=16% Similarity=0.228 Sum_probs=92.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+ ..+++|+|+++. ...++.+|+.+. ++.+++||+|+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l---------~~~v~~~D~s~~--------------~~~~~~~d~~~~--~~~~~~fD~v~ 120 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI---------RNPVHCFDLASL--------------DPRVTVCDMAQV--PLEDESVDVAV 120 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC---------CSCEEEEESSCS--------------STTEEESCTTSC--SCCTTCEEEEE
T ss_pred CCCCeEEEECCcCCHHHHHh---------hccEEEEeCCCC--------------CceEEEeccccC--CCCCCCEeEEE
Confidence 46789999999999975443 148999999988 236888888774 23457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--CCHHHHHHHHHHcCCcEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++..++. .+ ...++..+.++|+|||+++++.... ....++...+.+.||.......
T Consensus 121 ~~~~l~~-~~---------------------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 121 FCLSLMG-TN---------------------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp EESCCCS-SC---------------------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEEC
T ss_pred Eehhccc-cC---------------------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEec
Confidence 9877642 11 5688999999999999999976543 3567899999999998765432
Q ss_pred cCCCCccEEEEEEEecCc
Q 025207 199 RSTEEENLHIIKFWRDFD 216 (256)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~ 216 (256)
. ...+.++.+.|...
T Consensus 179 ~---~~~~~~~~~~k~~~ 193 (215)
T 2zfu_A 179 T---NSHFFLFDFQKTGP 193 (215)
T ss_dssp C---STTCEEEEEEECSS
T ss_pred C---CCeEEEEEEEecCc
Confidence 2 23345566666543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-12 Score=111.39 Aligned_cols=144 Identities=13% Similarity=0.148 Sum_probs=106.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
....+|+|+|||+|.+++.+++. +|+.+++..|. |.+++.|++++...+.+ .+++.+|+.+... ..+|++
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~----~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~----~~~D~~ 248 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSL----YPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL----PEADLY 248 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHH----CSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC----CCCSEE
T ss_pred ccCCeEEeeCCCCCHHHHHHHHh----CCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC----CCceEE
Confidence 35689999999999998888887 89999999997 88999999887644433 3899999876422 357999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
++.-.++..++. ....+|+++++.|+|||+++++....
T Consensus 249 ~~~~vlh~~~d~-------------------~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g 309 (353)
T 4a6d_A 249 ILARVLHDWADG-------------------KCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEG 309 (353)
T ss_dssp EEESSGGGSCHH-------------------HHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSC
T ss_pred EeeeecccCCHH-------------------HHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 985544433322 25688999999999999999977421
Q ss_pred --CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025207 177 --NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 177 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
+...+..+++++.||+...+.+... ...++.++|+.
T Consensus 310 ~ert~~e~~~ll~~AGf~~v~v~~~~~---~~~~i~ArKgt 347 (353)
T 4a6d_A 310 QERTPTHYHMLLSSAGFRDFQFKKTGA---IYDAILARKGT 347 (353)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEECCSS---SCEEEEEECCC
T ss_pred cCCCHHHHHHHHHHCCCceEEEEEcCC---ceEEEEEEecC
Confidence 1245788899999999888776532 23566676654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.5e-13 Score=104.94 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=83.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchh-----hhcC-
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLE-----KRLA- 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~-----~~~~- 113 (256)
+++.+|||+|||+|.++..+++. ++.|+|+|+++.. .. ...++++|+.+... ....
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~------~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL------ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT------CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeecCCHHHHHHHHc------CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 47899999999999988766654 5699999999742 11 23889999876421 1111
Q ss_pred ---CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 114 ---GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 114 ---~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
++||+|++|++........ .. ..........++..+.++|||||.+++..........+...+.. .
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~-----~d-----~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~-~ 155 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPS-----RD-----HAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRK-N 155 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHH-----HH-----HHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGG-G
T ss_pred ccCCcceEEecCCCcCCCCCcc-----cC-----HHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHH-h
Confidence 4899999998643222110 00 00112235677888999999999999866545444566666654 3
Q ss_pred CcEEEE
Q 025207 191 YAARIV 196 (256)
Q Consensus 191 ~~~~~~ 196 (256)
|....+
T Consensus 156 F~~v~~ 161 (191)
T 3dou_A 156 FSSYKI 161 (191)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 544333
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=115.36 Aligned_cols=127 Identities=18% Similarity=0.236 Sum_probs=93.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.++. ++++...+.. .+++.+|+.+.. + +||+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~----p-~~D~ 250 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLRE----HPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREV----P-HADV 250 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHH----CTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCC----C-CCSE
T ss_pred cCCceEEEECCccCHHHHHHHHH----CCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCC----C-CCcE
Confidence 46789999999999998888877 78889999999 45544 3322222322 388999987432 2 8999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
|++...+++.++. ....+++++.+.|||||++++.....
T Consensus 251 v~~~~vlh~~~d~-------------------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~ 311 (348)
T 3lst_A 251 HVLKRILHNWGDE-------------------DSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTG 311 (348)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSC
T ss_pred EEEehhccCCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCC
Confidence 9997665544332 14688999999999999999976311
Q ss_pred --CCHHHHHHHHHHcCCcEEEEEe
Q 025207 177 --NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 --~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...+++.+++++.||+...+..
T Consensus 312 ~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 312 QERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp CCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCceEEEEE
Confidence 1345788899999999887776
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=116.25 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=80.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++++|||||||+|.+++.+++. +. .+|+|+|.++ +++.|++++..|++.. .++.+|+.+... +++||+|
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a----GA-~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l---pe~~Dvi 153 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA----GA-RRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL---PEQVDAI 153 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----TC-SEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC---SSCEEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHh----CC-CEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC---CccccEE
Confidence 7899999999999998877775 22 3899999986 8899999999999865 899999887643 3789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|+.+--.... + ...+..++....++|||||+++-
T Consensus 154 vsE~~~~~l~---------------~---e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 154 VSEWMGYGLL---------------H---ESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp ECCCCBTTBT---------------T---TCSHHHHHHHHHHHEEEEEEEES
T ss_pred Eeeccccccc---------------c---cchhhhHHHHHHhhCCCCceECC
Confidence 9964211100 0 11267888888999999999873
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-13 Score=110.37 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=86.6
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcc--cCCCceEEEEeCCHHHHHHHHHHHHHcC-----C-cc
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQ--EVPGVQYIATDINPYAVEVTRKTLEAHN-----V-HA 97 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~--~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~-~~ 97 (256)
.+...+++.+.. ...++.+|||+|||+|.++..+++.++. ..+..+|+++|+++.+++.|++++...+ . ..
T Consensus 69 ~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v 147 (227)
T 1r18_A 69 HMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 147 (227)
T ss_dssp HHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence 344455554421 1246789999999999999988886431 0012589999999999999999988765 2 23
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.++.+|+.+..+. .++||+|+++.+.. .+.+.+.+.|||||++++...
T Consensus 148 ~~~~~d~~~~~~~--~~~fD~I~~~~~~~---------------------------~~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 148 LIVEGDGRKGYPP--NAPYNAIHVGAAAP---------------------------DTPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEEESCGGGCCGG--GCSEEEEEECSCBS---------------------------SCCHHHHHTEEEEEEEEEEES
T ss_pred EEEECCcccCCCc--CCCccEEEECCchH---------------------------HHHHHHHHHhcCCCEEEEEEe
Confidence 8899998774332 36899999987643 123667889999999999664
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8e-13 Score=110.40 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=75.1
Q ss_pred CCCEEEEecccccHH----HHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-----------------------cC
Q 025207 42 HPVLCMEVGCGSGYV----ITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-----------------------HN 94 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~----~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-----------------------~~ 94 (256)
++.+|||+|||||.. ++.++..+.....+++|+|+|+|+.|++.|++++.. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 468999999999984 444444432211147999999999999999987410 01
Q ss_pred -C--------cceEEEcchhhchhhhc-CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 95 -V--------HADLINTDIASGLEKRL-AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 95 -~--------~~~~~~~d~~~~~~~~~-~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
. ...+.++|+.+. ++. .++||+|+|.-.+.+.. ......++..+++.|+
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~--~~~~~~~fDlI~crnvliyf~-------------------~~~~~~vl~~~~~~L~ 243 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEK--QYNVPGPFDAIFCRNVMIYFD-------------------KTTQEDILRRFVPLLK 243 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCS--SCCCCCCEEEEEECSSGGGSC-------------------HHHHHHHHHHHGGGEE
T ss_pred ceeechhhcccCeEEecccCCC--CCCcCCCeeEEEECCchHhCC-------------------HHHHHHHHHHHHHHhC
Confidence 0 236788888773 221 46899999943322111 1235789999999999
Q ss_pred cCeEEEE
Q 025207 165 KRGWLYL 171 (256)
Q Consensus 165 pgG~l~~ 171 (256)
|||++++
T Consensus 244 pgG~L~l 250 (274)
T 1af7_A 244 PDGLLFA 250 (274)
T ss_dssp EEEEEEE
T ss_pred CCcEEEE
Confidence 9999998
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.6e-12 Score=99.23 Aligned_cols=128 Identities=11% Similarity=0.111 Sum_probs=82.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhccc-----CCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEE-Ecchhhchh----
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQE-----VPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLI-NTDIASGLE---- 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~-----~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~-~~d~~~~~~---- 109 (256)
.++.+|||+|||+|.+++.+++.+... .++.+|+|+|+++.+ ... ..++ .+|+.....
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHH
Confidence 468999999999999999988874210 012699999999842 112 3677 788655421
Q ss_pred --hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHH
Q 025207 110 --KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMM 187 (256)
Q Consensus 110 --~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 187 (256)
...+++||+|++++++....... ... .........++..+.++|||||++++.........++...+.
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 159 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRD-----LDH-----DRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLT 159 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHH-----HHH-----HHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHH
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcc-----cCH-----HHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHH
Confidence 11235899999987543221100 000 000112357899999999999999997665544456666665
Q ss_pred Hc
Q 025207 188 EK 189 (256)
Q Consensus 188 ~~ 189 (256)
..
T Consensus 160 ~~ 161 (196)
T 2nyu_A 160 EE 161 (196)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-12 Score=111.23 Aligned_cols=136 Identities=15% Similarity=0.239 Sum_probs=99.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+..+|||+|||+|.++..+++. +|+.+++++|+ +.+++.++++ ...+++.+|+.+..+ ++ |+|+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~p---~~--D~v~ 266 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAK----YPSINAINFDL-PHVIQDAPAF-----SGVEHLGGDMFDGVP---KG--DAIF 266 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTTCCC---CC--SEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHh----CCCCEEEEEeh-HHHHHhhhhc-----CCCEEEecCCCCCCC---CC--CEEE
Confidence 35689999999999998888887 78899999999 8888876542 234899999886322 23 9999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------------------------
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------------ 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------ 176 (256)
+.-.+++.++. ....+++++++.|+|||+++++....
T Consensus 267 ~~~vlh~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (368)
T 3reo_A 267 IKWICHDWSDE-------------------HCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYN 327 (368)
T ss_dssp EESCGGGBCHH-------------------HHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred EechhhcCCHH-------------------HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhc
Confidence 96655433321 24688999999999999999876321
Q ss_pred -----CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 177 -----NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 177 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
...++..+++++.||+...+...... ..++++.+
T Consensus 328 ~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~---~~vie~~k 366 (368)
T 3reo_A 328 PGGKERTEKEFQALAMASGFRGFKVASCAFN---TYVMEFLK 366 (368)
T ss_dssp SBCCCCCHHHHHHHHHHTTCCEEEEEEEETT---EEEEEEEC
T ss_pred CCCccCCHHHHHHHHHHCCCeeeEEEEeCCC---cEEEEEEe
Confidence 12356788889999998777665433 34666655
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.38 E-value=5e-13 Score=112.50 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~ 102 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++...+. ..+++++
T Consensus 14 ~~i~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~L~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 84 (285)
T 1zq9_A 14 PLIINSIIDKAA---LRPTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVG 84 (285)
T ss_dssp HHHHHHHHHHTC---CCTTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEES
T ss_pred HHHHHHHHHhcC---CCCCCEEEEEcCcccHHHHHHHhh------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc
Confidence 345566666553 257789999999999999888876 34899999999999999999876665 2389999
Q ss_pred chhhchhhhcCCCccEEEECCCCCC
Q 025207 103 DIASGLEKRLAGLVDVMVVNPPYVP 127 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~ 127 (256)
|+.+... ..||+|++|+||..
T Consensus 85 D~~~~~~----~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 85 DVLKTDL----PFFDTCVANLPYQI 105 (285)
T ss_dssp CTTTSCC----CCCSEEEEECCGGG
T ss_pred ceecccc----hhhcEEEEecCccc
Confidence 9877521 37999999999964
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.5e-13 Score=107.61 Aligned_cols=127 Identities=14% Similarity=0.092 Sum_probs=90.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|-+++.++.. .|.++++++|+++.+++.++.|+..+|+...+...|.....+ .+.+|+++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~----~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p---~~~~DvaL 203 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGL----PAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRL---DEPADVTL 203 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTC----CTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCC---CSCCSEEE
T ss_pred CCCceeeeeccCccHHHHHHHhh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCC---CCCcchHH
Confidence 45789999999999986555443 688999999999999999999999999988899999876643 47899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----------CHHHHHHHHHHc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----------DPSQICLQMMEK 189 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~~~~~~~~~~ 189 (256)
++--+....+ ..+ ...+ .+.+.|+++|+++- .+..+ ......+.+.+.
T Consensus 204 ~lkti~~Le~--------------q~k-----g~g~-~ll~aL~~~~vvVS-fp~ksl~Grs~gm~~~Y~~~~e~~~~~~ 262 (281)
T 3lcv_B 204 LLKTLPCLET--------------QQR-----GSGW-EVIDIVNSPNIVVT-FPTKSLGQRSKGMFQNYSQSFESQARER 262 (281)
T ss_dssp ETTCHHHHHH--------------HST-----THHH-HHHHHSSCSEEEEE-EECC-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh--------------hhh-----HHHH-HHHHHhCCCCEEEe-ccchhhcCCCcchhhHHHHHHHHHHHhc
Confidence 9643211100 000 1223 67788999998886 34311 123556666667
Q ss_pred CCcEEE
Q 025207 190 GYAARI 195 (256)
Q Consensus 190 g~~~~~ 195 (256)
|+.+..
T Consensus 263 g~~~~~ 268 (281)
T 3lcv_B 263 SCRIQR 268 (281)
T ss_dssp TCCEEE
T ss_pred CCceee
Confidence 885433
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-12 Score=106.69 Aligned_cols=124 Identities=10% Similarity=0.156 Sum_probs=83.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhh-hcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEK-RLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~-~~~~~fD~ 118 (256)
.++.+|||+|||||.++..+++. +..+|+|+|+++.|++.+.++- ... .+...++...... +...+||+
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~-----ga~~V~aVDvs~~mL~~a~r~~----~rv~~~~~~ni~~l~~~~l~~~~fD~ 154 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQN-----GAKLVYAVDVGTNQLVWKLRQD----DRVRSMEQYNFRYAEPVDFTEGLPSF 154 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-----TCSEEEEECSSSSCSCHHHHTC----TTEEEECSCCGGGCCGGGCTTCCCSE
T ss_pred ccccEEEecCCCccHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHhC----cccceecccCceecchhhCCCCCCCE
Confidence 36789999999999999877765 2348999999999998754321 111 1112233332211 12245999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-CC--------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-AN-------------------- 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~-------------------- 177 (256)
|+++..|+. +..++..+.++|+|||+++++..+ +.
T Consensus 155 v~~d~sf~s------------------------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~ 210 (291)
T 3hp7_A 155 ASIDVSFIS------------------------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEK 210 (291)
T ss_dssp EEECCSSSC------------------------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHH
T ss_pred EEEEeeHhh------------------------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHH
Confidence 999876642 356789999999999999886211 11
Q ss_pred CHHHHHHHHHHcCCcEEEEE
Q 025207 178 DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~~ 197 (256)
...++..++...||....+.
T Consensus 211 ~~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 211 VLETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp HHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 12357778888999876654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-11 Score=102.46 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=91.5
Q ss_pred CCCCEEEEecccc------cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE-EEcchhhchhhhcC
Q 025207 41 HHPVLCMEVGCGS------GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL-INTDIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~------G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~-~~~d~~~~~~~~~~ 113 (256)
+++.+|||+|||+ |. ..+++.+ .++++|+|+|+++. + . ..++ +++|+.+... .
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~---~~~~~V~gvDis~~-v---------~--~v~~~i~gD~~~~~~---~ 121 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWL---PTGTLLVDSDLNDF-V---------S--DADSTLIGDCATVHT---A 121 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHS---CTTCEEEEEESSCC-B---------C--SSSEEEESCGGGCCC---S
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHc---CCCCEEEEEECCCC-C---------C--CCEEEEECccccCCc---c
Confidence 5788999999944 76 3334442 23579999999998 1 1 2378 9999977532 3
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
++||+|++|++...... . .............+++.+.++|||||++++.........++...+++.||..
T Consensus 122 ~~fD~Vvsn~~~~~~g~-~---------~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~ 191 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKH-V---------TKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWT 191 (290)
T ss_dssp SCEEEEEECCCCCC----C---------CSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEE
T ss_pred CcccEEEEcCCcccccc-c---------cccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcE
Confidence 68999999964221100 0 0011122334678899999999999999996655555568888888888865
Q ss_pred EEEEecCCCCccEEEEEEEe
Q 025207 194 RIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~~~ 213 (256)
..+..........+++....
T Consensus 192 v~~~asr~~s~e~~lv~~~~ 211 (290)
T 2xyq_A 192 AFVTNVNASSSEAFLIGANY 211 (290)
T ss_dssp EEEEGGGTTSSCEEEEEEEE
T ss_pred EEEEEcCCCchheEEecCCc
Confidence 44442222233445554443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=105.65 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=89.0
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc
Q 025207 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~ 97 (256)
|..|- ..-.+.+++.+.. ..++.+|||+|||+|.++..+++. + ..+|+|+|+++.|++.++++.....
T Consensus 17 yvsrg--~~kL~~~L~~~~~--~~~g~~VLDiGcGtG~~t~~la~~----g-~~~V~gvDis~~ml~~a~~~~~~~~--- 84 (232)
T 3opn_A 17 YVSRG--GLKLEKALKEFHL--EINGKTCLDIGSSTGGFTDVMLQN----G-AKLVYALDVGTNQLAWKIRSDERVV--- 84 (232)
T ss_dssp SSSTT--HHHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHT----T-CSEEEEECSSCCCCCHHHHTCTTEE---
T ss_pred ccCCc--HHHHHHHHHHcCC--CCCCCEEEEEccCCCHHHHHHHhc----C-CCEEEEEcCCHHHHHHHHHhCcccc---
Confidence 44443 3333455555532 235789999999999998888775 2 2389999999999998776532211
Q ss_pred eEEEcchhhch-hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 98 DLINTDIASGL-EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 98 ~~~~~d~~~~~-~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.....++.... .......||.+.++..|.. +..++.++.++|||||+++++..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~------------------------l~~~l~~i~rvLkpgG~lv~~~~p~ 140 (232)
T 3opn_A 85 VMEQFNFRNAVLADFEQGRPSFTSIDVSFIS------------------------LDLILPPLYEILEKNGEVAALIKPQ 140 (232)
T ss_dssp EECSCCGGGCCGGGCCSCCCSEEEECCSSSC------------------------GGGTHHHHHHHSCTTCEEEEEECHH
T ss_pred ccccceEEEeCHhHcCcCCCCEEEEEEEhhh------------------------HHHHHHHHHHhccCCCEEEEEECcc
Confidence 00111221111 1111123576766665542 2467999999999999999863100
Q ss_pred ---------------------CCHHHHHHHHHHcCCcEEEEE
Q 025207 177 ---------------------NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 ---------------------~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++...+.+.||....+.
T Consensus 141 ~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 141 FEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp HHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 012367788888999876654
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=107.94 Aligned_cols=135 Identities=15% Similarity=0.169 Sum_probs=98.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+..+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++. ...+++.+|+.+..+ .+ |+|+
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p---~~--D~v~ 264 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAH----YPTIKGVNFDL-PHVISEAPQF-----PGVTHVGGDMFKEVP---SG--DTIL 264 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTTCCC---CC--SEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHH----CCCCeEEEecC-HHHHHhhhhc-----CCeEEEeCCcCCCCC---CC--CEEE
Confidence 45789999999999998888877 78889999999 8888776542 234899999887322 23 9999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------------------------
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------------ 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------ 176 (256)
+.-.+++.++ .....+++++++.|+|||+++++....
T Consensus 265 ~~~vlh~~~d-------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~ 325 (364)
T 3p9c_A 265 MKWILHDWSD-------------------QHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHN 325 (364)
T ss_dssp EESCGGGSCH-------------------HHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred ehHHhccCCH-------------------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcc
Confidence 8655443322 125688999999999999999976321
Q ss_pred -----CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025207 177 -----NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 177 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
...++..+++++.||+...+..... ...++++.
T Consensus 326 ~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~---~~~vie~~ 363 (364)
T 3p9c_A 326 PGGRERYEREFQALARGAGFTGVKSTYIYA---NAWAIEFT 363 (364)
T ss_dssp SSCCCCBHHHHHHHHHHTTCCEEEEEEEET---TEEEEEEE
T ss_pred cCCccCCHHHHHHHHHHCCCceEEEEEcCC---ceEEEEEe
Confidence 1134677888889998877665533 23455554
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7e-12 Score=109.34 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=97.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++. ...+++.+|+.+.. +. ||+|+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~----~~-~D~v~ 272 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISK----YPLIKGINFDL-PQVIENAPPL-----SGIEHVGGDMFASV----PQ-GDAMI 272 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTTCC----CC-EEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHH----CCCCeEEEeCh-HHHHHhhhhc-----CCCEEEeCCcccCC----CC-CCEEE
Confidence 35789999999999998888877 77889999999 9999877642 12488999987632 23 99999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC---CC--------------------
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---AN-------------------- 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~-------------------- 177 (256)
+.-.+++.++. ....+++++.+.|+|||++++.... ..
T Consensus 273 ~~~~lh~~~d~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 333 (372)
T 1fp1_D 273 LKAVCHNWSDE-------------------KCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV 333 (372)
T ss_dssp EESSGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc
Confidence 97665443321 1358899999999999999987421 10
Q ss_pred -----CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025207 178 -----DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 178 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
...++.+++++.||....+....... +.++++.
T Consensus 334 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~--~~vie~~ 371 (372)
T 1fp1_D 334 GGRERTEKQYEKLSKLSGFSKFQVACRAFNS--LGVMEFY 371 (372)
T ss_dssp SCCCEEHHHHHHHHHHTTCSEEEEEEEETTT--EEEEEEE
T ss_pred CCccCCHHHHHHHHHHCCCceEEEEEcCCCC--eEEEEEe
Confidence 13466777888899877666533221 2555543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-12 Score=108.24 Aligned_cols=88 Identities=19% Similarity=0.343 Sum_probs=66.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.+++.+++.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++..++... +++.+|+
T Consensus 29 ~i~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~La~~------~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~ 99 (299)
T 2h1r_A 29 GILDKIIYAAK---IKSSDIVLEIGCGTGNLTVKLLPL------AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDA 99 (299)
T ss_dssp HHHHHHHHHHC---CCTTCEEEEECCTTSTTHHHHTTT------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----C
T ss_pred HHHHHHHHhcC---CCCcCEEEEEcCcCcHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECch
Confidence 44556655543 247789999999999998776653 4589999999999999999998777644 8899998
Q ss_pred hhchhhhcCCCccEEEECCCCC
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
.+.. ..+||+|++|+||.
T Consensus 100 ~~~~----~~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 100 IKTV----FPKFDVCTANIPYK 117 (299)
T ss_dssp CSSC----CCCCSEEEEECCGG
T ss_pred hhCC----cccCCEEEEcCCcc
Confidence 7652 24899999999986
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.6e-12 Score=110.05 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=67.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcc-eEEEcchhhchhhhcCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++.+|||+|||+|..++.++.. +.+|+++|+|+.+++.|++|+..+ ++.. +++++|+.+.+.....++||+
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~------g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDv 166 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK------ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDY 166 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT------CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSE
T ss_pred CCCEEEEeCCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceE
Confidence 4799999999999998877664 459999999999999999999988 7743 999999988654322358999
Q ss_pred EEECCCCCCC
Q 025207 119 MVVNPPYVPT 128 (256)
Q Consensus 119 Ii~npP~~~~ 128 (256)
|++||||...
T Consensus 167 V~lDPPrr~~ 176 (410)
T 3ll7_A 167 IYVDPARRSG 176 (410)
T ss_dssp EEECCEEC--
T ss_pred EEECCCCcCC
Confidence 9999999763
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=106.42 Aligned_cols=124 Identities=15% Similarity=0.225 Sum_probs=92.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.|++. ...+++.+|+.+.. + .||+|+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~----p-~~D~v~ 251 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICET----FPKLKCIVFDR-PQVVENLSGS-----NNLTYVGGDMFTSI----P-NADAVL 251 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCB-----TTEEEEECCTTTCC----C-CCSEEE
T ss_pred ccCceEEEeCCCccHHHHHHHHH----CCCCeEEEeeC-HHHHhhcccC-----CCcEEEeccccCCC----C-CccEEE
Confidence 46689999999999998888876 78889999999 9999877641 12488999987632 1 399999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc---CeEEEEEEeCCC--------------------
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK---RGWLYLVTLTAN-------------------- 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~-------------------- 177 (256)
+.-.+++.++. ....+++++.+.||| ||+++++.....
T Consensus 252 ~~~~lh~~~d~-------------------~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~ 312 (352)
T 1fp2_A 252 LKYILHNWTDK-------------------DCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMA 312 (352)
T ss_dssp EESCGGGSCHH-------------------HHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGG
T ss_pred eehhhccCCHH-------------------HHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHH
Confidence 97665443321 134889999999999 999998753211
Q ss_pred -------CHHHHHHHHHHcCCcEEEEEe
Q 025207 178 -------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 -------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...++.+++++.||....+..
T Consensus 313 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 313 CLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp GGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred hccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 134667788888988766655
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-12 Score=107.33 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-------HHHHHHHHHHHHcCCc--ceEEEcchhhchhhh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-------YAVEVTRKTLEAHNVH--ADLINTDIASGLEKR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~-------~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~ 111 (256)
.++.+|||+|||+|.+++.++.. +++|+|+|+++ .+++.|++|+..+++. .+++++|+.+.+..+
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~------g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~ 155 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASL------GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPAL 155 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHT------TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHh------CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhh
Confidence 45789999999999999988875 45899999999 9999999998887763 489999998875544
Q ss_pred cC--CCccEEEECCCCCCC
Q 025207 112 LA--GLVDVMVVNPPYVPT 128 (256)
Q Consensus 112 ~~--~~fD~Ii~npP~~~~ 128 (256)
.+ ++||+|++||||.+.
T Consensus 156 ~~~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMYPER 174 (258)
T ss_dssp HHHHCCCSEEEECCCC---
T ss_pred hccCCCccEEEECCCCCCc
Confidence 33 689999999999653
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=104.05 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++.. .-+.+++++|+
T Consensus 36 ~~i~~~Iv~~l~---~~~~~~VLEIG~G~G~lT~~La~~------~~~V~aVEid~~li~~a~~~~~~-~~~v~vi~gD~ 105 (295)
T 3gru_A 36 KNFVNKAVESAN---LTKDDVVLEIGLGKGILTEELAKN------AKKVYVIEIDKSLEPYANKLKEL-YNNIEIIWGDA 105 (295)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCGGGHHHHHHHHHH-CSSEEEEESCT
T ss_pred HHHHHHHHHhcC---CCCcCEEEEECCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHhcc-CCCeEEEECch
Confidence 345566666543 257889999999999999988886 35899999999999999999862 22348999999
Q ss_pred hhchhhhcCCCccEEEECCCCC
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
.+... .+..||.|++|+||+
T Consensus 106 l~~~~--~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 106 LKVDL--NKLDFNKVVANLPYQ 125 (295)
T ss_dssp TTSCG--GGSCCSEEEEECCGG
T ss_pred hhCCc--ccCCccEEEEeCccc
Confidence 87632 235799999999996
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-12 Score=118.42 Aligned_cols=109 Identities=18% Similarity=0.242 Sum_probs=81.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+.+.+|||||||+|.++..+++. |+.|+|+|.++.+++.|+......+ ++.++.++++.+......+++||+|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~------ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v 138 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK------GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLA 138 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred CCCCeEEEECCCCcHHHHHHHhC------CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEE
Confidence 46789999999999999888876 6799999999999999999988877 5669999999887655556899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|.-.+.|.+++. + . ..+..+.+.|+++|..++...
T Consensus 139 ~~~e~~ehv~~~~---------------~---~-~~~~~~~~tl~~~~~~~~~~~ 174 (569)
T 4azs_A 139 IGLSVFHHIVHLH---------------G---I-DEVKRLLSRLADVTQAVILEL 174 (569)
T ss_dssp EEESCHHHHHHHH---------------C---H-HHHHHHHHHHHHHSSEEEEEC
T ss_pred EECcchhcCCCHH---------------H---H-HHHHHHHHHhccccceeeEEe
Confidence 9954433221110 0 1 112345667888888776553
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=107.72 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=78.3
Q ss_pred HHHHHHHHhhcccccCCCCEEEEeccc------ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCG------SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL 99 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG------~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~ 99 (256)
.+++.++..+. .++.+||||||| +|..++.+++.. +|+++|+|+|+++.|. ....+.++
T Consensus 204 ~~Ye~lL~~l~----~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~---fP~a~V~GVDiSp~m~--------~~~~rI~f 268 (419)
T 3sso_A 204 PHYDRHFRDYR----NQQVRVLEIGVGGYKHPEWGGGSLRMWKSF---FPRGQIYGLDIMDKSH--------VDELRIRT 268 (419)
T ss_dssp HHHHHHHGGGT----TSCCEEEEECCSCTTCSSCCCHHHHHHHHH---CTTCEEEEEESSCCGG--------GCBTTEEE
T ss_pred HHHHHHHHhhc----CCCCEEEEEecCCCcCCCCCHHHHHHHHHh---CCCCEEEEEECCHHHh--------hcCCCcEE
Confidence 45566655543 467999999999 676666665542 5788999999999973 12223489
Q ss_pred EEcchhhchhh--h--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 100 INTDIASGLEK--R--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 100 ~~~d~~~~~~~--~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++|+.+.... . .+++||+|+++--.+ ......+++++.++|||||++++..
T Consensus 269 v~GDa~dlpf~~~l~~~d~sFDlVisdgsH~----------------------~~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 269 IQGDQNDAEFLDRIARRYGPFDIVIDDGSHI----------------------NAHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp EECCTTCHHHHHHHHHHHCCEEEEEECSCCC----------------------HHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEecccccchhhhhhcccCCccEEEECCccc----------------------chhHHHHHHHHHHhcCCCeEEEEEe
Confidence 99998774211 0 147899999963211 1225688999999999999999964
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=99.55 Aligned_cols=115 Identities=14% Similarity=0.171 Sum_probs=81.9
Q ss_pred CCCEEEEecccc--cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchh----hhcCC
Q 025207 42 HPVLCMEVGCGS--GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLE----KRLAG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~--G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~----~~~~~ 114 (256)
...+|||+|||+ +..+..+++.. .|+++|+++|.|+.|++.|+.++...+. ...++++|+.+... +...+
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~---~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSV---APESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRD 154 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHH---CTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHH---CCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccc
Confidence 447999999997 33444444432 6889999999999999999988764432 23899999987521 11124
Q ss_pred Ccc-----EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 115 LVD-----VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 115 ~fD-----~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.|| .|++|-.+++.++.+ ....++..+.+.|+|||++++.+....
T Consensus 155 ~~D~~~p~av~~~avLH~l~d~~------------------~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 155 TLDLTRPVALTVIAIVHFVLDED------------------DAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TCCTTSCCEEEEESCGGGSCGGG------------------CHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred ccCcCCcchHHhhhhHhcCCchh------------------hHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 455 577877666555432 135789999999999999999876544
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-11 Score=104.70 Aligned_cols=123 Identities=14% Similarity=0.220 Sum_probs=92.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+..+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++. ...+++.+|+.+.. + .||+|++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~----~-~~D~v~~ 257 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEI----FPHLKCTVFDQ-PQVVGNLTGN-----ENLNFVGGDMFKSI----P-SADAVLL 257 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTSEEEEEEC-HHHHSSCCCC-----SSEEEEECCTTTCC----C-CCSEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHH----CCCCeEEEecc-HHHHhhcccC-----CCcEEEeCccCCCC----C-CceEEEE
Confidence 5689999999999998888877 78889999999 7888776541 12488899987621 2 4999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc---CeEEEEEEeCCC---------------------
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK---RGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~--------------------- 177 (256)
.-.+++.++. ....+++++.+.|+| ||+++++.....
T Consensus 258 ~~vlh~~~d~-------------------~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~ 318 (358)
T 1zg3_A 258 KWVLHDWNDE-------------------QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT 318 (358)
T ss_dssp ESCGGGSCHH-------------------HHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH
T ss_pred cccccCCCHH-------------------HHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc
Confidence 7666544332 145889999999999 999998653211
Q ss_pred -------CHHHHHHHHHHcCCcEEEEEe
Q 025207 178 -------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 -------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...++.+++++.||+...+..
T Consensus 319 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 319 MFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp HHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 234667788888998777665
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-11 Score=99.24 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++.. .-+.+++++|+
T Consensus 15 ~~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~La~~------~~~V~avEid~~~~~~~~~~~~~-~~~v~~i~~D~ 84 (255)
T 3tqs_A 15 SFVLQKIVSAIH---PQKTDTLVEIGPGRGALTDYLLTE------CDNLALVEIDRDLVAFLQKKYNQ-QKNITIYQNDA 84 (255)
T ss_dssp HHHHHHHHHHHC---CCTTCEEEEECCTTTTTHHHHTTT------SSEEEEEECCHHHHHHHHHHHTT-CTTEEEEESCT
T ss_pred HHHHHHHHHhcC---CCCcCEEEEEcccccHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHhh-CCCcEEEEcch
Confidence 345556666553 257889999999999998777664 35899999999999999998764 22348999999
Q ss_pred hhchhh-hc-CCCccEEEECCCCC
Q 025207 105 ASGLEK-RL-AGLVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~-~~-~~~fD~Ii~npP~~ 126 (256)
.+...+ .. .+.|| |++|+||+
T Consensus 85 ~~~~~~~~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 85 LQFDFSSVKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp TTCCGGGSCCSSCEE-EEEECCHH
T ss_pred HhCCHHHhccCCCeE-EEecCCcc
Confidence 887432 11 35688 99999985
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-11 Score=100.35 Aligned_cols=98 Identities=7% Similarity=-0.070 Sum_probs=74.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----CCcceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----NVHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++|||+|||+|..+.++++ . + .+|+++|+++.+++.|++++... ....+++.+|..+.. ++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~----~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-----~~ 139 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFK----Y-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-----KK 139 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTT----S-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-----CC
T ss_pred CCCCEEEEEeCCcCHHHHHHHh----C-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-----hh
Confidence 3568999999999997654443 2 4 69999999999999998876431 123478888987764 68
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
||+|+++.+ + ...+++.+.+.|+|||++++....
T Consensus 140 fD~Ii~d~~-----d---------------------p~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 140 YDLIFCLQE-----P---------------------DIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp EEEEEESSC-----C---------------------CHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEECCC-----C---------------------hHHHHHHHHHhcCCCcEEEEEcCC
Confidence 999999742 0 123788999999999999986543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=102.45 Aligned_cols=92 Identities=12% Similarity=0.153 Sum_probs=71.8
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025207 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
+++.+++.+. ..++.+|||+|||+|..++.+++. .++++|+|+|+|+.+++.|++++..++....++++|+.+
T Consensus 14 Ll~e~l~~L~---~~~g~~vLD~g~G~G~~s~~la~~----~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~ 86 (301)
T 1m6y_A 14 MVREVIEFLK---PEDEKIILDCTVGEGGHSRAILEH----CPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE 86 (301)
T ss_dssp THHHHHHHHC---CCTTCEEEETTCTTSHHHHHHHHH----CTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred HHHHHHHhcC---CCCCCEEEEEeCCcCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 4455555543 257889999999999999988887 456799999999999999999998877444899999876
Q ss_pred chhhh---cCCCccEEEECCCC
Q 025207 107 GLEKR---LAGLVDVMVVNPPY 125 (256)
Q Consensus 107 ~~~~~---~~~~fD~Ii~npP~ 125 (256)
..... ...+||.|++|||+
T Consensus 87 l~~~l~~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 87 ADFLLKTLGIEKVDGILMDLGV 108 (301)
T ss_dssp HHHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHHHhcCCCCCCEEEEcCcc
Confidence 53211 11579999999986
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-13 Score=113.42 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=80.6
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
++.+++.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++. .....+++++|+.+.
T Consensus 18 ~~~i~~~~~---~~~~~~VLDiG~G~G~~~~~l~~~------~~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~ 87 (245)
T 1yub_A 18 LNQIIKQLN---LKETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQF 87 (245)
T ss_dssp HHHHHHHCC---CCSSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTT
T ss_pred HHHHHHhcC---CCCCCEEEEEeCCCCHHHHHHHHh------CCeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhc
Confidence 344444442 246789999999999999888876 2589999999999999888765 112338889998775
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHH----HHHhhccccCeEEEEEE
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKIL----PSADKLLSKRGWLYLVT 173 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~LkpgG~l~~~~ 173 (256)
..+ .+++| .|++||||+.....-. ....... . ...++ +.+.++|+|||++.++.
T Consensus 88 ~~~-~~~~f-~vv~n~Py~~~~~~~~-----~~~~~~~-~----~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 88 QFP-NKQRY-KIVGNIPYHLSTQIIK-----KVVFESR-A----SDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp TCC-CSSEE-EEEEECCSSSCHHHHH-----HHHHHCC-C----EEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred Ccc-cCCCc-EEEEeCCccccHHHHH-----HHHhCCC-C----CeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 321 12578 8999999985431100 0000000 0 01123 55788889998877643
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.9e-11 Score=99.99 Aligned_cols=91 Identities=20% Similarity=0.156 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+.+.+. ..++ +|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++.. .+.+++++|+
T Consensus 33 ~~i~~~Iv~~~~---~~~~-~VLEIG~G~G~lt~~L~~~------~~~V~avEid~~~~~~l~~~~~~--~~v~vi~~D~ 100 (271)
T 3fut_A 33 EAHLRRIVEAAR---PFTG-PVFEVGPGLGALTRALLEA------GAEVTAIEKDLRLRPVLEETLSG--LPVRLVFQDA 100 (271)
T ss_dssp HHHHHHHHHHHC---CCCS-CEEEECCTTSHHHHHHHHT------TCCEEEEESCGGGHHHHHHHTTT--SSEEEEESCG
T ss_pred HHHHHHHHHhcC---CCCC-eEEEEeCchHHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcCC--CCEEEEECCh
Confidence 345566666553 2456 9999999999999888876 35899999999999999998752 2348999999
Q ss_pred hhchhhhcCCCccEEEECCCCCCC
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~ 128 (256)
.+...+. ...+|.|++|+||+..
T Consensus 101 l~~~~~~-~~~~~~iv~NlPy~is 123 (271)
T 3fut_A 101 LLYPWEE-VPQGSLLVANLPYHIA 123 (271)
T ss_dssp GGSCGGG-SCTTEEEEEEECSSCC
T ss_pred hhCChhh-ccCccEEEecCccccc
Confidence 8763321 1368999999999753
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-10 Score=93.42 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=61.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.+++... ++..++|+|+++.+++.+++++..++.+..+...|.....+ ++++|+|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-------~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~---~~~~DvvL 173 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-------GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP---AEAGDLAL 173 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-------TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC---CCBCSEEE
T ss_pred CCCCeEEEecCCccHHHHHhc-------cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC---CCCcchHH
Confidence 368899999999999876544 46799999999999999999999999878999999877644 36999999
Q ss_pred EC
Q 025207 121 VN 122 (256)
Q Consensus 121 ~n 122 (256)
++
T Consensus 174 ll 175 (253)
T 3frh_A 174 IF 175 (253)
T ss_dssp EE
T ss_pred HH
Confidence 86
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-10 Score=93.87 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+.+.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++... -..+++++|+
T Consensus 16 ~~~~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~-~~v~~~~~D~ 85 (244)
T 1qam_A 16 KHNIDKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTENKLVDH-DNFQVLNKDI 85 (244)
T ss_dssp HHHHHHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHTTTC-CSEEEECCCG
T ss_pred HHHHHHHHHhCC---CCCCCEEEEEeCCchHHHHHHHHc------CCeEEEEECCHHHHHHHHHhhccC-CCeEEEEChH
Confidence 455566666553 247789999999999999988876 258999999999999999987532 2348999999
Q ss_pred hhchhhhcCCCccEEEECCCCC
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
.+...+ ....| .|++|+||+
T Consensus 86 ~~~~~~-~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 86 LQFKFP-KNQSY-KIFGNIPYN 105 (244)
T ss_dssp GGCCCC-SSCCC-EEEEECCGG
T ss_pred HhCCcc-cCCCe-EEEEeCCcc
Confidence 876322 11345 689999995
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.18 E-value=7.1e-11 Score=91.85 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=83.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh-hhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE-KRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~fD~I 119 (256)
+++.+|||+|||. +++|+++.|++.|+++... ..+++.+|+.+... .+.+++||+|
T Consensus 11 ~~g~~vL~~~~g~--------------------v~vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 11 SAGQFVAVVWDKS--------------------SPVEALKGLVDKLQALTGN---EGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp CTTSEEEEEECTT--------------------SCHHHHHHHHHHHHHHTTT---TSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred CCCCEEEEecCCc--------------------eeeeCCHHHHHHHHHhccc---CcEEEEechhcCccccCCCCCEeEE
Confidence 5789999999986 1279999999999987532 25888999887532 1146789999
Q ss_pred EECCCCCCC-CCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------CHHHHHHHHHHc
Q 025207 120 VVNPPYVPT-PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------DPSQICLQMMEK 189 (256)
Q Consensus 120 i~npP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------~~~~~~~~~~~~ 189 (256)
+++..+++. ++ ...++++++++|||||++++..+... ...++.+.+++.
T Consensus 68 ~~~~~l~~~~~~---------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 126 (176)
T 2ld4_A 68 LSGLVPGSTTLH---------------------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLS 126 (176)
T ss_dssp EECCSTTCCCCC---------------------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHT
T ss_pred EECChhhhcccC---------------------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHC
Confidence 997766554 22 36789999999999999999665221 256889999999
Q ss_pred CCcEE
Q 025207 190 GYAAR 194 (256)
Q Consensus 190 g~~~~ 194 (256)
|| ..
T Consensus 127 Gf-i~ 130 (176)
T 2ld4_A 127 GL-VE 130 (176)
T ss_dssp TC-EE
T ss_pred CC-cE
Confidence 99 54
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-10 Score=98.78 Aligned_cols=142 Identities=12% Similarity=0.007 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-------
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH------- 96 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~------- 96 (256)
+..++..+++ .+++.+|||+|+|.|.-+..++.. ..+..|++.|+++..++.+++|+.+.+..
T Consensus 136 aS~l~~~~L~------~~pg~~VLD~CAaPGGKT~~la~~----~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~ 205 (359)
T 4fzv_A 136 ASLLPVLALG------LQPGDIVLDLCAAPGGKTLALLQT----GCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQ 205 (359)
T ss_dssp GGHHHHHHHC------CCTTEEEEESSCTTCHHHHHHHHT----TCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSS
T ss_pred HHHHHHHHhC------CCCCCEEEEecCCccHHHHHHHHh----cCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCc
Confidence 4555555544 268999999999999999888876 34458999999999999999999987652
Q ss_pred ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCC----CCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 97 ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGG----ENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
..+...|..... ....+.||.|++++|...... ...++.+...+... ..-......+|..+.++|||||+++.+
T Consensus 206 v~v~~~D~~~~~-~~~~~~fD~VLlDaPCSg~g~-g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYs 283 (359)
T 4fzv_A 206 VRVTSWDGRKWG-ELEGDTYDRVLVDVPCTTDRH-SLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS 283 (359)
T ss_dssp EEEECCCGGGHH-HHSTTCEEEEEEECCCCCHHH-HTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEeCchhhcc-hhccccCCEEEECCccCCCCC-cccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 267777876643 234578999999999743100 01111111111000 000124567889999999999999999
Q ss_pred EeCCC
Q 025207 173 TLTAN 177 (256)
Q Consensus 173 ~~~~~ 177 (256)
+++..
T Consensus 284 TCSl~ 288 (359)
T 4fzv_A 284 TCSLS 288 (359)
T ss_dssp ESCCC
T ss_pred eCCCc
Confidence 98765
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.3e-10 Score=93.07 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++....++ +++|+|+|+++.+++.++++. ..+.+++++|+
T Consensus 28 ~~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~La~~~~~~--~~~V~avDid~~~l~~a~~~~---~~~v~~i~~D~ 99 (279)
T 3uzu_A 28 HGVIDAIVAAIR---PERGERMVEIGPGLGALTGPVIARLATP--GSPLHAVELDRDLIGRLEQRF---GELLELHAGDA 99 (279)
T ss_dssp HHHHHHHHHHHC---CCTTCEEEEECCTTSTTHHHHHHHHCBT--TBCEEEEECCHHHHHHHHHHH---GGGEEEEESCG
T ss_pred HHHHHHHHHhcC---CCCcCEEEEEccccHHHHHHHHHhCCCc--CCeEEEEECCHHHHHHHHHhc---CCCcEEEECCh
Confidence 345566666553 2578899999999999999998874310 245999999999999999983 22348999999
Q ss_pred hhchhh-hcC-C--CccEEEECCCCC
Q 025207 105 ASGLEK-RLA-G--LVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~-~~~-~--~fD~Ii~npP~~ 126 (256)
.+...+ ..+ . ..+.|++|+||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 100 LTFDFGSIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp GGCCGGGGSCSSSSCCEEEEEECCHH
T ss_pred hcCChhHhcccccCCceEEEEccCcc
Confidence 886432 211 1 346899999985
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-11 Score=102.03 Aligned_cols=108 Identities=10% Similarity=0.052 Sum_probs=69.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH---HcCCcceEE--EcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE---AHNVHADLI--NTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~---~~~~~~~~~--~~d~~~~~~~~~~~~ 115 (256)
+++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++.. ..+.+..++ ++|+.+.. +++
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~-------~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----~~~ 148 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ-------PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME----PFQ 148 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS-------TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC----CCC
T ss_pred CCCCEEEEeccCCCHHHHHHHHc-------CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC----CCC
Confidence 57889999999999998776653 3899999998 5333222100 011133777 88887642 478
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe--EEEEEEeC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG--WLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~ 175 (256)
||+|+|+.. ....... .. ......++..+.++||||| .+++....
T Consensus 149 fD~Vvsd~~-~~~~~~~-----~d---------~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 149 ADTVLCDIG-ESNPTAA-----VE---------ASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CSEEEECCC-CCCSCHH-----HH---------HHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred cCEEEECCC-cCCCchh-----hh---------HHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 999999876 2222110 00 0001136888999999999 88885544
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-10 Score=92.43 Aligned_cols=91 Identities=19% Similarity=0.152 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++.. +..+|+|+|+++.+++.++++ ...+.+++++|+
T Consensus 17 ~~i~~~iv~~~~---~~~~~~VLDiG~G~G~lt~~L~~~-----~~~~v~avEid~~~~~~~~~~---~~~~v~~i~~D~ 85 (249)
T 3ftd_A 17 EGVLKKIAEELN---IEEGNTVVEVGGGTGNLTKVLLQH-----PLKKLYVIELDREMVENLKSI---GDERLEVINEDA 85 (249)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEEESCHHHHHHHHTTS-----CCSEEEEECCCHHHHHHHTTS---CCTTEEEECSCT
T ss_pred HHHHHHHHHhcC---CCCcCEEEEEcCchHHHHHHHHHc-----CCCeEEEEECCHHHHHHHHhc---cCCCeEEEEcch
Confidence 445566666553 246889999999999988776653 236899999999999999887 222348999999
Q ss_pred hhchhhhcCCCccEEEECCCCCC
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVP 127 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~ 127 (256)
.+...+...+. ..|++|+||..
T Consensus 86 ~~~~~~~~~~~-~~vv~NlPy~i 107 (249)
T 3ftd_A 86 SKFPFCSLGKE-LKVVGNLPYNV 107 (249)
T ss_dssp TTCCGGGSCSS-EEEEEECCTTT
T ss_pred hhCChhHccCC-cEEEEECchhc
Confidence 87633211123 48999999963
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-11 Score=101.17 Aligned_cols=108 Identities=16% Similarity=0.068 Sum_probs=69.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH---HHcCCcceEE--EcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL---EAHNVHADLI--NTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~---~~~~~~~~~~--~~d~~~~~~~~~~~~ 115 (256)
+++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++. ...+.+..++ ++|+.+.. +++
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~-------~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----~~~ 140 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR-------PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP----VER 140 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS-------TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC----CCC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc-------CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC----CCC
Confidence 57899999999999998776653 4899999998 532222110 0011133677 88887642 478
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe--EEEEEEeC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG--WLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~ 175 (256)
||+|+|+.. ....... .+ ......++..+.++||||| .+++....
T Consensus 141 fD~V~sd~~-~~~~~~~-----~d---------~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 141 TDVIMCDVG-ESSPKWS-----VE---------SERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CSEEEECCC-CCCSCHH-----HH---------HHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CcEEEEeCc-ccCCccc-----hh---------HHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 999999876 2222110 00 0001137888999999999 88885544
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-09 Score=89.42 Aligned_cols=134 Identities=18% Similarity=0.262 Sum_probs=91.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhccc---CC-----CceEEEEeCCH---HHHH-----------HHHHHHHHc-----
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQE---VP-----GVQYIATDINP---YAVE-----------VTRKTLEAH----- 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~---~~-----~~~v~giD~~~---~~i~-----------~a~~~~~~~----- 93 (256)
+++.+|||+|+|+|..++.+++...+. .| ..+++++|..| +.+. .++.++...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 466899999999999988877754111 34 25899999887 4444 556665531
Q ss_pred ---------C-CcceEEEcchhhchhhhcC---CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025207 94 ---------N-VHADLINTDIASGLEKRLA---GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 94 ---------~-~~~~~~~~d~~~~~~~~~~---~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
+ ...+++.+|+.+.++.... ..||+|+.++ |.+...++ .| ...++..+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~p~--------lw---------~~~~l~~l~ 200 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKNPD--------MW---------TQNLFNAMA 200 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTCGG--------GC---------CHHHHHHHH
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccChh--------hc---------CHHHHHHHH
Confidence 1 1237899999887665422 3799999985 22111111 01 367899999
Q ss_pred hccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025207 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
++|+|||+++. +.....+++.+...||.+...
T Consensus 201 ~~L~pGG~l~t----ysaa~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 201 RLARPGGTLAT----FTSAGFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp HHEEEEEEEEE----SCCBHHHHHHHHHHTEEEEEE
T ss_pred HHcCCCcEEEE----EeCCHHHHHHHHHCCCEEEeC
Confidence 99999999885 333457888899999986544
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.7e-10 Score=93.29 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=62.1
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------C-C--cceEEEcchhhchhhhcC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------N-V--HADLINTDIASGLEKRLA 113 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~-~--~~~~~~~d~~~~~~~~~~ 113 (256)
.+|||+|||+|..++.++.. +++|+++|+++.+++.++++++.. + + ..+++++|..+.+... .
T Consensus 90 ~~VLDl~~G~G~dal~lA~~------g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~-~ 162 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-T 162 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-S
T ss_pred CEEEEcCCcCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC-c
Confidence 89999999999999999886 458999999999887777776532 2 2 2389999998876543 3
Q ss_pred CCccEEEECCCCCC
Q 025207 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
.+||+|++||||..
T Consensus 163 ~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 163 PRPQVVYLDPMFPH 176 (258)
T ss_dssp SCCSEEEECCCCCC
T ss_pred ccCCEEEEcCCCCC
Confidence 47999999999954
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.3e-09 Score=82.99 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--c--ceEEEcchhhc----------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--H--ADLINTDIASG---------- 107 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~--~~~~~~d~~~~---------- 107 (256)
+.++|||+||| .-++.+++. ++++|+++|.+++..+.|+++++..++ . .+++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~-----~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~ 102 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAEL-----PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDA 102 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTS-----TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred CCCEEEEECch--HHHHHHHHc-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccch
Confidence 56899999985 566666653 256999999999999999999999986 3 38888996543
Q ss_pred ----hhh-------h-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 108 ----LEK-------R-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 108 ----~~~-------~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
++. . ..++||+|+.+-.+ ....+..+.++|+|||++++
T Consensus 103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k--------------------------~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRF--------------------------RVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp TGGGTTHHHHGGGGCTTCCCCSEEEECSSS--------------------------HHHHHHHHHHHCSSCEEEEE
T ss_pred hhhhHHHHhhhhhccccCCCCCEEEEeCCC--------------------------chhHHHHHHHhcCCCeEEEE
Confidence 111 1 13689999996321 23556667789999999976
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-10 Score=93.87 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=65.4
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.+++.+. ..++.+|||+|||+|.++. +.. ....+|+|+|+++.+++.+++++... -+.+++++|+.
T Consensus 8 ~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~-l~~-----~~~~~v~avEid~~~~~~a~~~~~~~-~~v~~i~~D~~ 77 (252)
T 1qyr_A 8 FVIDSIVSAIN---PQKGQAMVEIGPGLAALTE-PVG-----ERLDQLTVIELDRDLAARLQTHPFLG-PKLTIYQQDAM 77 (252)
T ss_dssp HHHHHHHHHHC---CCTTCCEEEECCTTTTTHH-HHH-----TTCSCEEEECCCHHHHHHHHTCTTTG-GGEEEECSCGG
T ss_pred HHHHHHHHhcC---CCCcCEEEEECCCCcHHHH-hhh-----CCCCeEEEEECCHHHHHHHHHHhccC-CceEEEECchh
Confidence 45566666553 2467899999999999988 532 22234999999999999999876432 13489999998
Q ss_pred hchh-hhc--CCCccEEEECCCCCC
Q 025207 106 SGLE-KRL--AGLVDVMVVNPPYVP 127 (256)
Q Consensus 106 ~~~~-~~~--~~~fD~Ii~npP~~~ 127 (256)
+... ... .+..|.|++|+||+.
T Consensus 78 ~~~~~~~~~~~~~~~~vvsNlPY~i 102 (252)
T 1qyr_A 78 TFNFGELAEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp GCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred hCCHHHhhcccCCceEEEECCCCCc
Confidence 7532 211 134689999999974
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.6e-10 Score=95.20 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=68.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC----CHHHHHHHHHHHHHcCCcc-eEEEc-chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI----NPYAVEVTRKTLEAHNVHA-DLINT-DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~----~~~~i~~a~~~~~~~~~~~-~~~~~-d~~~~~~~~~~~ 114 (256)
+++.+|||+|||+|.++..+++. ..|+|+|+ ++.+++.+. ....+.+. .++.+ |+... ..+
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~-------~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l----~~~ 147 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL-------KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFI----PPE 147 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS-------TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTS----CCC
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc-------CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccC----CcC
Confidence 56789999999999998776653 37999999 554432111 11111222 77777 77654 236
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+||+|+|+.++. ..... .. ......++..+.++|||||.+++.....
T Consensus 148 ~fD~V~sd~~~~-~g~~~-----~d---------~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 148 RCDTLLCDIGES-SPNPT-----VE---------AGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCSEEEECCCCC-CSSHH-----HH---------HHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CCCEEEECCccc-cCcch-----hh---------HHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 899999987653 11100 00 0001146788889999999988855433
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.3e-09 Score=86.05 Aligned_cols=111 Identities=15% Similarity=0.181 Sum_probs=82.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--C----CcceEEEcchhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--N----VHADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~----~~~~~~~~d~~~~~~~~~~~ 114 (256)
..+++||=||-|.|..+.++++. .+..+|+.+||++..++.+++.+... + ...+++.+|....+.. .++
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~----~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~-~~~ 156 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRH----KNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ-TSQ 156 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTC----TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC-SSC
T ss_pred CCCCeEEEECCCchHHHHHHHHc----CCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh-ccc
Confidence 57899999999999986665554 44568999999999999999987542 1 1238999999988754 457
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+||.+.+-...+. . .+ ....+++.+.+.|+|||+++.-.
T Consensus 157 ~yDvIi~D~~dp~~~~-~--------~L--------~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 157 TFDVIISDCTDPIGPG-E--------SL--------FTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp CEEEEEESCCCCCCTT-C--------CS--------SCCHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCEEEEeCCCcCCCc-h--------hh--------cCHHHHHHHHHHhCCCCEEEEec
Confidence 8999999864211111 0 01 12477899999999999999854
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.4e-09 Score=96.69 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=75.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..+.|||+|||+|-+....++...+.....+|+|+|.++. ...+++.+..|++.. +++++|+.+...+ +++|+|
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~LP---EKVDII 432 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVAP---EKADII 432 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCCS---SCEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccCC---cccCEE
Confidence 4468999999999885555554332223457999999985 567888889999876 8999999987544 789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
|+-. .. .+...+ .+..++....+.|||||+++
T Consensus 433 VSEw--------------MG-~fLl~E----~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VSEL--------------LG-SFADNE----LSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ECCC--------------CB-TTBGGG----CHHHHHHHHGGGEEEEEEEE
T ss_pred EEEc--------------Cc-cccccc----CCHHHHHHHHHhcCCCcEEc
Confidence 9932 11 111111 13467777889999999976
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-08 Score=94.38 Aligned_cols=108 Identities=17% Similarity=0.104 Sum_probs=73.1
Q ss_pred CCEEEEecccccHHHHHHHHHhcccC---------CCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhh-
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEV---------PGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEK- 110 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~---------~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~- 110 (256)
++.|||+|||+|.+...++....... ...+|+|+|.++.++..++.... |++.. +++.+|+.+...+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 57899999999998643333221001 23589999999988866665554 77755 9999999988542
Q ss_pred --hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 111 --RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 111 --~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
...+++|+||+-.- |-.........++..+.+.|||||+++
T Consensus 489 ~~~~~ekVDIIVSElm-------------------Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELL-------------------GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCC-------------------BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEecc-------------------ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 11478999999432 000001124567777889999999876
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.3e-08 Score=81.22 Aligned_cols=130 Identities=11% Similarity=-0.005 Sum_probs=92.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccC-CCceEEEEeCCH--------------------------HHHHHHHHHHHHc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEV-PGVQYIATDINP--------------------------YAVEVTRKTLEAH 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~-~~~~v~giD~~~--------------------------~~i~~a~~~~~~~ 93 (256)
..++.|||+||..|..++.++..+.... ++.+|+++|..+ ..++.+++|++..
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 4678999999999999998888764322 366899999642 1467789999998
Q ss_pred CCc---ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 94 NVH---ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 94 ~~~---~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++. .+++.+++.+.++....++||+|..+-- . -......++.+.+.|+|||+++
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD----------------------~-y~~~~~~Le~~~p~L~pGGiIv 241 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD----------------------L-YESTWDTLTNLYPKVSVGGYVI 241 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC----------------------S-HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC----------------------c-cccHHHHHHHHHhhcCCCEEEE
Confidence 873 3999999998887655678999998621 0 1224577899999999999999
Q ss_pred EEEeCCC--CHHHHHHHHHHcCCcE
Q 025207 171 LVTLTAN--DPSQICLQMMEKGYAA 193 (256)
Q Consensus 171 ~~~~~~~--~~~~~~~~~~~~g~~~ 193 (256)
+-..... ....+.++....++..
T Consensus 242 ~DD~~~~~G~~~Av~Ef~~~~~i~~ 266 (282)
T 2wk1_A 242 VDDYMMCPPCKDAVDEYRAKFDIAD 266 (282)
T ss_dssp ESSCTTCHHHHHHHHHHHHHTTCCS
T ss_pred EcCCCCCHHHHHHHHHHHHhcCCce
Confidence 8222110 1123444455566543
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-08 Score=73.58 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=59.3
Q ss_pred cCCccccCCc--hHHHHHHHHHhhcccccCCCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025207 14 HPEVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 14 ~~~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G-~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
|.+-+.|+-. .+-+++.+.+.. .++.+|||+|||+| .++..++.. .+..|+++|+++.+++
T Consensus 10 ~~~~~~~~~~~m~e~LaeYI~~~~-----~~~~rVlEVG~G~g~~vA~~La~~-----~g~~V~atDInp~Av~------ 73 (153)
T 2k4m_A 10 HSSGLVPRGSHMWNDLAVYIIRCS-----GPGTRVVEVGAGRFLYVSDYIRKH-----SKVDLVLTDIKPSHGG------ 73 (153)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHS-----CSSSEEEEETCTTCCHHHHHHHHH-----SCCEEEEECSSCSSTT------
T ss_pred ccCCcccchhhHHHHHHHHHHhcC-----CCCCcEEEEccCCChHHHHHHHHh-----CCCeEEEEECCccccc------
Confidence 4455566543 233444443332 35689999999999 587777763 2678999999999877
Q ss_pred HHcCCcceEEEcchhhchhhhcCCCccEE-EECCC
Q 025207 91 EAHNVHADLINTDIASGLEKRLAGLVDVM-VVNPP 124 (256)
Q Consensus 91 ~~~~~~~~~~~~d~~~~~~~~~~~~fD~I-i~npP 124 (256)
+++.|+++..... -+.||+| -.|||
T Consensus 74 --------~v~dDiF~P~~~~-Y~~~DLIYsirPP 99 (153)
T 2k4m_A 74 --------IVRDDITSPRMEI-YRGAALIYSIRPP 99 (153)
T ss_dssp --------EECCCSSSCCHHH-HTTEEEEEEESCC
T ss_pred --------eEEccCCCCcccc-cCCcCEEEEcCCC
Confidence 7788888764431 1489999 56888
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=75.34 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=80.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CC---c---ceEEEcchhhchhhh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NV---H---ADLINTDIASGLEKR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~---~---~~~~~~d~~~~~~~~ 111 (256)
.++++||=+|-|.|..+.++.+. +..+|+.+||++..++.|++.+... .. . .+++.+|....+...
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-----~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~ 278 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-----KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRY 278 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-----CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-----CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhh
Confidence 45789999999999986655543 3358999999999999999875321 11 1 278899998887532
Q ss_pred --cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 112 --LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 --~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
...+||+||.+.+=....... . +.........+++.+.+.|+|||+++.-.
T Consensus 279 ~~~~~~yDvIIvDl~D~~~s~~p---~--------g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 279 AKEGREFDYVINDLTAVPISTSP---E--------EDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC---------------CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhccCceeEEEECCCCCcccCcc---c--------CcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 246899999975321111000 0 00112245788999999999999998743
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.52 E-value=9.6e-08 Score=79.10 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=85.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhc--CCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRL--AGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~fD~I 119 (256)
.+..+||+.+|||.+++++.. ++.+++.+|.++..++..++|+.. .-+.+++..|....+.... ..+||+|
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS------~~d~~vfvE~~~~a~~~L~~Nl~~-~~~~~V~~~D~~~~L~~l~~~~~~fdLV 163 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLR------SQDRLYLCELHPTEYNFLLKLPHF-NKKVYVNHTDGVSKLNALLPPPEKRGLI 163 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSC------TTSEEEEECCSHHHHHHHTTSCCT-TSCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred cCCCceeEeCCcHHHHHHHcC------CCCeEEEEeCCHHHHHHHHHHhCc-CCcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence 457799999999999876544 245899999999999999999864 2234899999877664321 3479999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh--ccccCeEEEEEEeCCCC--HHHHHHHHHHcCC
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK--LLSKRGWLYLVTLTAND--PSQICLQMMEKGY 191 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~~~--~~~~~~~~~~~g~ 191 (256)
+++|||-... .+..+++.+.+ .+.++|++++..|-... ...+.+.+++.+.
T Consensus 164 fiDPPYe~k~---------------------~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~ 218 (283)
T 2oo3_A 164 FIDPSYERKE---------------------EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS 218 (283)
T ss_dssp EECCCCCSTT---------------------HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred EECCCCCCCc---------------------HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence 9999995211 14455554443 46799999998875542 2344445554454
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.41 E-value=9.1e-07 Score=73.19 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=64.5
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025207 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
+.+.+++.+. .+++..++|.+||.|..+..+++. +++|+|+|.++.+++.|++ +.. -...++++++.+
T Consensus 10 Ll~e~le~L~---~~~gg~~VD~T~G~GGHS~~il~~------~g~VigiD~Dp~Ai~~A~~-L~~--~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLLA---VRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKG-LHL--PGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHHT---CCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHH-TCC--TTEEEEESCGGG
T ss_pred HHHHHHHhhC---CCCCCEEEEeCCCCcHHHHHHHHC------CCEEEEEeCCHHHHHHHHh-hcc--CCEEEEECCcch
Confidence 3344444443 257899999999999998877764 4699999999999999988 543 234899999877
Q ss_pred chh---hhcCCCccEEEECCCC
Q 025207 107 GLE---KRLAGLVDVMVVNPPY 125 (256)
Q Consensus 107 ~~~---~~~~~~fD~Ii~npP~ 125 (256)
... ....+++|.|++|+.+
T Consensus 78 l~~~L~~~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 78 LKRHLAALGVERVDGILADLGV 99 (285)
T ss_dssp HHHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHHHHcCCCCcCEEEeCCcc
Confidence 632 2223579999997764
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.6e-07 Score=74.52 Aligned_cols=127 Identities=9% Similarity=0.016 Sum_probs=70.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||+|||+|.++..+++. .+-..++|+|+..++....... ...+.+...+..++.. ..+..+.||+|+
T Consensus 73 ~~~~~VLDLGaAPGGWSQvAa~~----~~~~~v~g~dVGvDl~~~pi~~-~~~g~~ii~~~~~~dv--~~l~~~~~DlVl 145 (277)
T 3evf_A 73 KLEGRVIDLGCGRGGWCYYAAAQ----KEVSGVKGFTLGRDGHEKPMNV-QSLGWNIITFKDKTDI--HRLEPVKCDTLL 145 (277)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTS----TTEEEEEEECCCCTTCCCCCCC-CBTTGGGEEEECSCCT--TTSCCCCCSEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHh----cCCCcceeEEEeccCccccccc-CcCCCCeEEEecccee--hhcCCCCccEEE
Confidence 57789999999999998766654 2233678888774421000000 0001122333444311 123457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEeC--CCCHHHHHHHHHHc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTLT--ANDPSQICLQMMEK 189 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~--~~~~~~~~~~~~~~ 189 (256)
++.-.. +... +.+ ......+++.+.+.|+|| |.+++-... .....++...++..
T Consensus 146 sD~apn-sG~~-----~~D---------~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~ 202 (277)
T 3evf_A 146 CDIGES-SSSS-----VTE---------GERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRR 202 (277)
T ss_dssp ECCCCC-CSCH-----HHH---------HHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred ecCccC-cCch-----HHH---------HHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHh
Confidence 985322 1110 101 001223478889999999 999985543 33334556666655
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=9.3e-06 Score=68.14 Aligned_cols=136 Identities=13% Similarity=0.213 Sum_probs=89.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc--eEEEEeCCH--------HHHH-HHHHHHHHc----C--CcceEEEcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV--QYIATDINP--------YAVE-VTRKTLEAH----N--VHADLINTD 103 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~--~v~giD~~~--------~~i~-~a~~~~~~~----~--~~~~~~~~d 103 (256)
++.-+|||+|-|+|...+.....+.+..|+. +++++|..+ +..+ ..+...... + +...+..+|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 4567899999999998765554433334543 467777532 1111 122222221 1 122788999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
+.+.++.....+||+|+.++ |.+...++ .| ...++..+.++++|||++.- +.....++
T Consensus 175 a~~~l~~l~~~~~Da~flDg-FsP~kNPe--------LW---------s~e~f~~l~~~~~pgg~laT----Ytaag~VR 232 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDA-FSPYKNPE--------LW---------TLDFLSLIKERIDEKGYWVS----YSSSLSVR 232 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECC-SCTTTSGG--------GG---------SHHHHHHHHTTEEEEEEEEE----SCCCHHHH
T ss_pred HHHHHhhhcccceeEEEeCC-CCcccCcc--------cC---------CHHHHHHHHHHhCCCcEEEE----EeCcHHHH
Confidence 98888776556899999975 44333332 12 46889999999999999874 44567899
Q ss_pred HHHHHcCCcEEEEEe
Q 025207 184 LQMMEKGYAARIVVQ 198 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~ 198 (256)
+.|.+.||.+..+..
T Consensus 233 R~L~~aGF~V~k~~G 247 (308)
T 3vyw_A 233 KSLLTLGFKVGSSRE 247 (308)
T ss_dssp HHHHHTTCEEEEEEC
T ss_pred HHHHHCCCEEEecCC
Confidence 999999999766543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-05 Score=67.76 Aligned_cols=133 Identities=16% Similarity=0.078 Sum_probs=80.2
Q ss_pred CCEEEEecccccHHHHHHHHHh----cc---------cCCCceEEEEeCC-----------HHHHHHHHHHHHHcCC--c
Q 025207 43 PVLCMEVGCGSGYVITSLALML----GQ---------EVPGVQYIATDIN-----------PYAVEVTRKTLEAHNV--H 96 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l----~~---------~~~~~~v~giD~~-----------~~~i~~a~~~~~~~~~--~ 96 (256)
..+|+|+||++|..++.+...+ .+ ..|..+|+.-|+- +...+.+++ ..+. .
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 6899999999999998877762 22 2467889999987 444333222 2222 2
Q ss_pred ceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCccccccc------ch-hhhcCCCCc-----------HHHHHHHHH
Q 025207 97 ADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREG------IA-SAWAGGENG-----------RAVIDKILP 157 (256)
Q Consensus 97 ~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~------~~-~~~~~~~~~-----------~~~~~~~l~ 157 (256)
.-++.+....+-. -++++++|+|+++..++..+.......+ .+ ..+...... ...+..+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2555655444432 2346899999999888776654321110 00 001111100 123456688
Q ss_pred HHhhccccCeEEEEEEeCCCC
Q 025207 158 SADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 158 ~~~~~LkpgG~l~~~~~~~~~ 178 (256)
...+.|+|||++++...+...
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCT
T ss_pred HHHHHhccCCeEEEEEecCCC
Confidence 889999999999998875543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.6e-06 Score=70.85 Aligned_cols=60 Identities=12% Similarity=0.212 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...+++.++.... .++..|||++||+|..++++++. +.+++|+|+++.+++.|++++...
T Consensus 221 p~~l~~~~i~~~~----~~~~~vlD~f~GsGt~~~~a~~~------g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 221 PLELAERLVRMFS----FVGDVVLDPFAGTGTTLIAAARW------GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CHHHHHHHHHHHC----CTTCEEEETTCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3456666665542 57899999999999999887775 458999999999999999998764
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=72.50 Aligned_cols=145 Identities=11% Similarity=0.011 Sum_probs=79.9
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
..|..| +.+-..++.+.. . -+++.+|||+|||.|.++..+++. .+-..++|+|+...+...+... ...+.
T Consensus 69 g~YrSR--AAfKL~ei~eK~-~--Lk~~~~VLDLGaAPGGWsQvAa~~----~gv~sV~GvdvG~d~~~~pi~~-~~~g~ 138 (282)
T 3gcz_A 69 GIAVSR--GSAKLRWMEERG-Y--VKPTGIVVDLGCGRGGWSYYAASL----KNVKKVMAFTLGVQGHEKPIMR-TTLGW 138 (282)
T ss_dssp SBCSST--HHHHHHHHHHTT-S--CCCCEEEEEETCTTCHHHHHHHTS----TTEEEEEEECCCCTTSCCCCCC-CBTTG
T ss_pred CCEecH--HHHHHHHHHHhc-C--CCCCCEEEEeCCCCCHHHHHHHHh----cCCCeeeeEEeccCcccccccc-ccCCC
Confidence 445554 333334444443 2 257789999999999998776654 2334789999976532211100 00122
Q ss_pred cceEEEc--chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC--eEEEE
Q 025207 96 HADLINT--DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR--GWLYL 171 (256)
Q Consensus 96 ~~~~~~~--d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~ 171 (256)
+...+.. |+. .+...++|+|+|+..-. +.... .+ ......+++.+.+.|+|| |.+++
T Consensus 139 ~ii~~~~~~dv~----~l~~~~~DvVLSDmApn-sG~~~-----~D---------~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 139 NLIRFKDKTDVF----NMEVIPGDTLLCDIGES-SPSIA-----VE---------EQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp GGEEEECSCCGG----GSCCCCCSEEEECCCCC-CSCHH-----HH---------HHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred ceEEeeCCcchh----hcCCCCcCEEEecCccC-CCChH-----HH---------HHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 2222221 322 22357899999985432 21111 01 011224578888999999 99998
Q ss_pred EEeC--CCCHHHHHHHHHHc
Q 025207 172 VTLT--ANDPSQICLQMMEK 189 (256)
Q Consensus 172 ~~~~--~~~~~~~~~~~~~~ 189 (256)
-... .....++...++..
T Consensus 200 KvF~pyg~~~~~l~~~lk~~ 219 (282)
T 3gcz_A 200 KVLCPYTPLIMEELSRLQLK 219 (282)
T ss_dssp EESCCCSHHHHHHHHHHHHH
T ss_pred EEecCCCccHHHHHHHHHHh
Confidence 5543 33334556666555
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-06 Score=72.66 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=59.5
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.++++|+.+.+....+++||+|++||||............. ............+..++.++.++|||||.+++......
T Consensus 23 ~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~-~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~ 101 (297)
T 2zig_A 23 RLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQL-GHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVA 101 (297)
T ss_dssp EEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CC-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEE
T ss_pred EEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhh-cccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 79999999876655568999999999997643211100000 00000011122356678899999999999998654211
Q ss_pred -------------CHHHHHHHHHHcCCcE
Q 025207 178 -------------DPSQICLQMMEKGYAA 193 (256)
Q Consensus 178 -------------~~~~~~~~~~~~g~~~ 193 (256)
....+...+.+.||..
T Consensus 102 ~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~ 130 (297)
T 2zig_A 102 VARRRFGRHLVFPLHADIQVRCRKLGFDN 130 (297)
T ss_dssp EECC----EEEECHHHHHHHHHHHTTCEE
T ss_pred cccccCCcccccccHHHHHHHHHHcCCee
Confidence 1246777888889865
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-05 Score=68.70 Aligned_cols=136 Identities=14% Similarity=0.133 Sum_probs=81.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhc-----------ccCCCceEEEEeCCHHHHHHHHHHHHHcC-----------C--cc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLG-----------QEVPGVQYIATDINPYAVEVTRKTLEAHN-----------V--HA 97 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~-----------~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----------~--~~ 97 (256)
.+.+|+|+|||+|..++.+...+- ...|..+|+.-|+-.+.....=+.+.... . ..
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 368999999999999888744321 12378899999988887765544443211 0 11
Q ss_pred eEEEcchhhch-hhhcCCCccEEEECCCCCCCCCccccccc-chhhh------cCCCCc----------HHHHHHHHHHH
Q 025207 98 DLINTDIASGL-EKRLAGLVDVMVVNPPYVPTPEDEVGREG-IASAW------AGGENG----------RAVIDKILPSA 159 (256)
Q Consensus 98 ~~~~~d~~~~~-~~~~~~~fD~Ii~npP~~~~~~~~~~~~~-~~~~~------~~~~~~----------~~~~~~~l~~~ 159 (256)
-+..+....+- ..+++++||+|+++..++..+.......+ ...+| ...... ...+..+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333322221 12346899999999888776643211110 00000 000000 11355678888
Q ss_pred hhccccCeEEEEEEeCCC
Q 025207 160 DKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~~ 177 (256)
.+.|+|||+++++..+..
T Consensus 212 a~eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HHHEEEEEEEEEEEEECC
T ss_pred HHHhCCCCEEEEEEecCC
Confidence 999999999999877554
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=98.10 E-value=5.1e-05 Score=65.11 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=88.5
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh-cCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR-LAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~fD~Ii 120 (256)
..+|+|+.||.|.+++.+... +-+ -.++++|+++.+++..+.|.. ...++.+|+.+..... ....+|+|+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~----G~~~~~v~~~E~d~~a~~~~~~N~~----~~~~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRES----CIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH----TCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CCeEEEeCcCccHHHHHHHHC----CCCceEEEEEeCCHHHHHHHHHhcc----ccccccCCHHHccHhHcCcCCcCEEE
Confidence 468999999999999888776 211 259999999999999888863 1257788888764321 112699999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeC---CCCHHHHHHHHHHcCCcEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLT---ANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~---~~~~~~~~~~~~~~g~~~~~ 195 (256)
.+||....+...... . ..+.++ .....+++ +.+.++ |.-+++=.... ......+.+.|.+.||.+..
T Consensus 74 ~gpPCq~fS~ag~~~-g-----~~d~r~-~l~~~~~~-~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~ 145 (343)
T 1g55_A 74 MSPPCQPFTRIGRQG-D-----MTDSRT-NSFLHILD-ILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQE 145 (343)
T ss_dssp ECCC-------------------------CHHHHHHH-HGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred EcCCCcchhhcCCcC-C-----ccCccc-hHHHHHHH-HHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCeeEE
Confidence 999976554421110 0 001111 01233333 344566 76444311121 11234677788888987654
Q ss_pred EEe------cCCCCccEEEEEEEec
Q 025207 196 VVQ------RSTEEENLHIIKFWRD 214 (256)
Q Consensus 196 ~~~------~~~~~~~~~l~~~~~~ 214 (256)
... ..+...+++++-..++
T Consensus 146 ~vl~a~~~GvPQ~R~R~~iv~~~~~ 170 (343)
T 1g55_A 146 FLLSPTSLGIPNSRLRYFLIAKLQS 170 (343)
T ss_dssp EEECGGGGTCSCCCCEEEEEEEESS
T ss_pred EEEEHHHCCCCCcccEEEEEEEeCC
Confidence 321 2344677777766554
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=66.68 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
..|++.++... ..++..|||++||+|..++++.++ +.+++|+|+++.+++.+++++..+++
T Consensus 199 ~~l~~~~i~~~----~~~~~~vlD~f~GsGtt~~~a~~~------gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 199 RDLIERIIRAS----SNPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp HHHHHHHHHHH----CCTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 45666665554 368899999999999999887775 45899999999999999999876553
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00031 Score=59.75 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=91.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+.+|+|++||+|.+++.+... +. -.+.++|+++.+++..+.|... ...+|+.+...... ..+|+|+.
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~a----G~-~~v~~~e~d~~a~~t~~~N~~~------~~~~Di~~~~~~~~-~~~D~l~~ 77 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESC----GA-ECVYSNEWDKYAQEVYEMNFGE------KPEGDITQVNEKTI-PDHDILCA 77 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT----TC-EEEEEECCCHHHHHHHHHHHSC------CCBSCGGGSCGGGS-CCCSEEEE
T ss_pred CCCcEEEECCCcCHHHHHHHHC----CC-eEEEEEeCCHHHHHHHHHHcCC------CCcCCHHHcCHhhC-CCCCEEEE
Confidence 3579999999999998887765 22 2588999999999999888642 11678777644322 35999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCcEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~~~~ 195 (256)
.||+...+...... .+. ++++. .+..+++- .+.++|.-+++=..+... ....+.+.+++.||.+..
T Consensus 78 gpPCQ~fS~ag~~~-----g~~-d~r~~-L~~~~~r~-i~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~ 149 (327)
T 2c7p_A 78 GFPCQAFSISGKQK-----GFE-DSRGT-LFFDIARI-VREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA 149 (327)
T ss_dssp ECCCTTTCTTSCCC-----GGG-STTSC-HHHHHHHH-HHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred CCCCCCcchhcccC-----CCc-chhhH-HHHHHHHH-HHhccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEE
Confidence 99998776543211 011 11111 13344443 344688643332222221 124577778888887543
Q ss_pred EE--e----cCCCCccEEEEEEEe
Q 025207 196 VV--Q----RSTEEENLHIIKFWR 213 (256)
Q Consensus 196 ~~--~----~~~~~~~~~l~~~~~ 213 (256)
.. . ..+...+++++-..+
T Consensus 150 ~vl~a~~~GvPQ~R~R~~iv~~~~ 173 (327)
T 2c7p_A 150 KVLNALDYGIPQKRERIYMICFRN 173 (327)
T ss_dssp EEEEGGGGTCSBCCEEEEEEEEBG
T ss_pred EEEEHHHcCCCccceEEEEEEEeC
Confidence 22 2 123456666665544
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00032 Score=60.89 Aligned_cols=151 Identities=12% Similarity=0.051 Sum_probs=88.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh------cCCCcc
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR------LAGLVD 117 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~fD 117 (256)
.+|+|+.||.|.+++.+.+. +.. .+.++|+++.+++..+.|.. ...++++|+.+..... ....+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a----G~~-~v~avE~d~~a~~t~~~N~~----~~~~~~~DI~~~~~~~~~~~~~~~~~~D 73 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA----GFD-VKMAVEIDQHAINTHAINFP----RSLHVQEDVSLLNAEIIKGFFKNDMPID 73 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH----TCE-EEEEECSCHHHHHHHHHHCT----TSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred CeEEEEccCcCHHHHHHHHC----CCc-EEEEEeCCHHHHHHHHHhCC----CCceEecChhhcCHHHHHhhcccCCCee
Confidence 47999999999999888776 221 47799999999988887742 2367788887764321 236799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcH-HHHHHHHHHHhhccccCeEEEEEEeCCCC------HHHHHHHHHHcC
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGR-AVIDKILPSADKLLSKRGWLYLVTLTAND------PSQICLQMMEKG 190 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~~~~~~~g 190 (256)
+|+..||....+..... +..+.. ..+..+++ +.+.++|.-+++=..+.... ...+. .+.+.|
T Consensus 74 ~i~ggpPCQ~fS~ag~~---------~~~d~r~~L~~~~~~-~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~G 142 (376)
T 3g7u_A 74 GIIGGPPCQGFSSIGKG---------NPDDSRNQLYMHFYR-LVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGD 142 (376)
T ss_dssp EEEECCCCCTTC----------------CHHHHHHHHHHHH-HHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTT
T ss_pred EEEecCCCCCcccccCC---------CCCCchHHHHHHHHH-HHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCC
Confidence 99999997655543211 001111 12233333 34456886444422222211 23455 778888
Q ss_pred CcE---EEEEe----cCCCCccEEEEEEEec
Q 025207 191 YAA---RIVVQ----RSTEEENLHIIKFWRD 214 (256)
Q Consensus 191 ~~~---~~~~~----~~~~~~~~~l~~~~~~ 214 (256)
|.+ ..+.. ..+...+++++-..++
T Consensus 143 Y~v~~~~vl~a~dyGvPQ~R~R~~iig~r~~ 173 (376)
T 3g7u_A 143 YDILDPIKVKASDYGAPTIRTRYFFIGVKKS 173 (376)
T ss_dssp EEECCCEEEEGGGGTCSBCCEEEEEEEEEGG
T ss_pred CccCcEEEEEHhhCCCCCCCcEEEEEEEeCC
Confidence 876 23322 2234567666665544
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00031 Score=60.36 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=50.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||+||++|.++..+++. ++.|+|||+.+-. . .+... -...++.+|.....++ .+.||+|+
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~r------g~~V~aVD~~~l~-~----~l~~~-~~V~~~~~d~~~~~~~--~~~~D~vv 275 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKR------NMWVYSVDNGPMA-Q----SLMDT-GQVTWLREDGFKFRPT--RSNISWMV 275 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT------TCEEEEECSSCCC-H----HHHTT-TCEEEECSCTTTCCCC--SSCEEEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHC------CCEEEEEEhhhcC-h----hhccC-CCeEEEeCccccccCC--CCCcCEEE
Confidence 68999999999999999877665 5699999976421 1 11111 1237888898776543 46899999
Q ss_pred ECCC
Q 025207 121 VNPP 124 (256)
Q Consensus 121 ~npP 124 (256)
|+..
T Consensus 276 sDm~ 279 (375)
T 4auk_A 276 CDMV 279 (375)
T ss_dssp ECCS
T ss_pred EcCC
Confidence 9754
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00032 Score=58.02 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhccc--ccCCCCEEEEecc------cccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 25 FALVDALLADRINL--VEHHPVLCMEVGC------GSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 25 ~~l~~~l~~~~~~~--~~~~~~~VLDlGc------G~G~~~~~la~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
..-+..+-+++... .-..+.+|||+|+ ..|.. .+.++ .|+ +.|+++|+.+-...
T Consensus 90 v~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~----~p~g~~VVavDL~~~~sd----------- 152 (344)
T 3r24_A 90 VAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQW----LPTGTLLVDSDLNDFVSD----------- 152 (344)
T ss_dssp HHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHH----SCTTCEEEEEESSCCBCS-----------
T ss_pred HHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHh----CCCCcEEEEeeCcccccC-----------
Confidence 34445566776432 2247899999996 66763 23333 454 69999999875421
Q ss_pred cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 96 HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 96 ~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
...++++|+..... .++||+|+++..=..+... . ..........+.+++-+.+.|+|||.+++-...
T Consensus 153 a~~~IqGD~~~~~~---~~k~DLVISDMAPNtTG~~-----D-----~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQ 219 (344)
T 3r24_A 153 ADSTLIGDCATVHT---ANKWDLIISDMYDPRTKHV-----T-----KENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 219 (344)
T ss_dssp SSEEEESCGGGEEE---SSCEEEEEECCCCTTSCSS-----C-----SCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CCeEEEcccccccc---CCCCCEEEecCCCCcCCcc-----c-----cchhHHHHHHHHHHHHHHHhCcCCCEEEEEEec
Confidence 11569999766432 3789999997531111110 0 000012234678888899999999999996654
Q ss_pred CCCHHHHHHHHHHcCCcEEEEE
Q 025207 176 ANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 176 ~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....+++.+ +.+ .|....+.
T Consensus 220 Gsg~~~L~~-lrk-~F~~VK~f 239 (344)
T 3r24_A 220 HSWNADLYK-LMG-HFSWWTAF 239 (344)
T ss_dssp SSCCHHHHH-HHT-TEEEEEEE
T ss_pred CCCHHHHHH-HHh-hCCeEEEE
Confidence 444344444 333 45544433
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.9e-05 Score=65.47 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=78.6
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.|..|. ...| ..+.+. ..+ .++.+|||+||++|.++..+++.. +-..|+|+|+...+...... +...+.
T Consensus 60 g~yrSRa-a~KL-~ei~ek-~l~--~~g~~vlDLGaaPGgWsqva~~~~----gv~sV~Gvdlg~~~~~~P~~-~~~~~~ 129 (300)
T 3eld_A 60 GISVSRG-AAKI-RWLHER-GYL--RITGRVLDLGCGRGGWSYYAAAQK----EVMSVKGYTLGIEGHEKPIH-MQTLGW 129 (300)
T ss_dssp CCCSSTT-HHHH-HHHHHH-TSC--CCCEEEEEETCTTCHHHHHHHTST----TEEEEEEECCCCTTSCCCCC-CCBTTG
T ss_pred CCccchH-HHHH-HHHHHh-CCC--CCCCEEEEcCCCCCHHHHHHHHhc----CCceeeeEEecccccccccc-ccccCC
Confidence 4566653 2333 344444 322 588999999999999987777642 23368899987542110000 000011
Q ss_pred cc-eEEEc-chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEE
Q 025207 96 HA-DLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLV 172 (256)
Q Consensus 96 ~~-~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 172 (256)
+. .+... |+. .+..+.+|+|+++..-. +... ..+ ......++..+.+.|+|| |.+++-
T Consensus 130 ~iv~~~~~~di~----~l~~~~~DlVlsD~APn-sG~~-----~~D---------~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 130 NIVKFKDKSNVF----TMPTEPSDTLLCDIGES-SSNP-----LVE---------RDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp GGEEEECSCCTT----TSCCCCCSEEEECCCCC-CSSH-----HHH---------HHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred ceEEeecCceee----ecCCCCcCEEeecCcCC-CCCH-----HHH---------HHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 11 12211 222 22346899999975322 1111 000 111234478888999999 999985
Q ss_pred EeC--CCCHHHHHHHHHHc
Q 025207 173 TLT--ANDPSQICLQMMEK 189 (256)
Q Consensus 173 ~~~--~~~~~~~~~~~~~~ 189 (256)
... .....++...++..
T Consensus 191 vF~~yG~~~~~ll~~lk~~ 209 (300)
T 3eld_A 191 VLAPYHPDVIEKLERLQLR 209 (300)
T ss_dssp ESSTTSHHHHHHHHHHHHH
T ss_pred eccccCccHHHHHHHHHHh
Confidence 543 33334556666555
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.87 E-value=8.3e-05 Score=63.84 Aligned_cols=76 Identities=8% Similarity=0.027 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhcccccC----CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEE
Q 025207 25 FALVDALLADRINLVEH----HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI 100 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~----~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~ 100 (256)
.-+++.|.+.+. +... ++..|||||.|.|.+|..++.... ..+|+++|+++..+...++.. . .-+.+++
T Consensus 38 ~~i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~----~~~vvavE~D~~l~~~L~~~~-~-~~~l~ii 110 (353)
T 1i4w_A 38 PTVYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC----PRQYSLLEKRSSLYKFLNAKF-E-GSPLQIL 110 (353)
T ss_dssp HHHHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC----CSEEEEECCCHHHHHHHHHHT-T-TSSCEEE
T ss_pred HHHHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCC----CCEEEEEecCHHHHHHHHHhc-c-CCCEEEE
Confidence 555666666654 2111 468999999999999998887532 237999999999999888766 2 2234899
Q ss_pred Ecchhhc
Q 025207 101 NTDIASG 107 (256)
Q Consensus 101 ~~d~~~~ 107 (256)
.+|+.+.
T Consensus 111 ~~D~l~~ 117 (353)
T 1i4w_A 111 KRDPYDW 117 (353)
T ss_dssp CSCTTCH
T ss_pred ECCccch
Confidence 9998665
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.77 E-value=9.8e-05 Score=62.79 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=58.2
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA- 176 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~- 176 (256)
.++++|..+.+....+++||+|+++|||.......-... .... -...+...+..+.++|+|||.+++.....
T Consensus 16 ~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~-~~~~------~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~ 88 (323)
T 1boo_A 16 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNL-EQHE------YVDWFLSFAKVVNKKLKPDGSFVVDFGGAY 88 (323)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSC-HHHH------HHHHHHHHHHHHHHHEEEEEEEEEEECCCE
T ss_pred eEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCc-CHHH------HHHHHHHHHHHHHHHCcCCcEEEEEECCEe
Confidence 789999988766555689999999999975432110000 0000 02246677889999999999999965432
Q ss_pred -C--------CHHHHHHHHHHcCCcE
Q 025207 177 -N--------DPSQICLQMMEKGYAA 193 (256)
Q Consensus 177 -~--------~~~~~~~~~~~~g~~~ 193 (256)
. ....+...++..||..
T Consensus 89 ~~g~~~~~~~~~~~i~~~~~~~Gf~~ 114 (323)
T 1boo_A 89 MKGVPARSIYNFRVLIRMIDEVGFFL 114 (323)
T ss_dssp ETTEEEECCHHHHHHHHHHHTTCCEE
T ss_pred cCCCcccccchHHHHHHHHHhCCCEE
Confidence 1 1234555667788865
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.6e-05 Score=64.52 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=58.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhc----CCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRL----AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~f 116 (256)
+++..++|..||.|.-+..+++.+ +++++|+|+|.++.+++.++ ++ ..-...++++++.+...-.. .+++
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~l---g~~GrVig~D~Dp~Al~~A~-rL--~~~Rv~lv~~nF~~l~~~L~~~g~~~~v 129 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQL---GEEGRLLAIDRDPQAIAVAK-TI--DDPRFSIIHGPFSALGEYVAERDLIGKI 129 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTC---CTTCEEEEEESCHHHHHHHT-TC--CCTTEEEEESCGGGHHHHHHHTTCTTCE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhC---CCCCEEEEEECCHHHHHHHH-hh--cCCcEEEEeCCHHHHHHHHHhcCCCCcc
Confidence 688999999999999987777654 46779999999999999884 33 22223788888877643211 1369
Q ss_pred cEEEECCCC
Q 025207 117 DVMVVNPPY 125 (256)
Q Consensus 117 D~Ii~npP~ 125 (256)
|.|+.|..+
T Consensus 130 DgILfDLGV 138 (347)
T 3tka_A 130 DGILLDLGV 138 (347)
T ss_dssp EEEEEECSC
T ss_pred cEEEECCcc
Confidence 999996644
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.74 E-value=4.9e-05 Score=65.36 Aligned_cols=135 Identities=14% Similarity=0.093 Sum_probs=83.4
Q ss_pred CCCEEEEecccccHHHHHHHHH----h-------cc-cCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhc
Q 025207 42 HPVLCMEVGCGSGYVITSLALM----L-------GQ-EVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASG 107 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~----l-------~~-~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~ 107 (256)
...+|+|+||++|..++.+... + .+ ..|..+|+..|+..+....+-+.+..... ..-+..+....+
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4578999999999876654433 1 11 35778999999999998887766543111 124555544433
Q ss_pred hh-hhcCCCccEEEECCCCCCCCCccccccc-chhhhcCCC--------C---cHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 108 LE-KRLAGLVDVMVVNPPYVPTPEDEVGREG-IASAWAGGE--------N---GRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 108 ~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~-~~~~~~~~~--------~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-. -++++++|+|+++...+..+.......+ ....+.... . ....+..+|+...+.|+|||++++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 22 2346899999998887766553211110 000000000 0 123566778999999999999999776
Q ss_pred CC
Q 025207 175 TA 176 (256)
Q Consensus 175 ~~ 176 (256)
+.
T Consensus 211 gr 212 (359)
T 1m6e_X 211 GR 212 (359)
T ss_dssp EC
T ss_pred cC
Confidence 44
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.74 E-value=5.6e-05 Score=62.24 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=59.5
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.++++|..+.+....+++||+|+++|||......-. ....... -...+...+..+.++|+|+|.+++.... .
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d-~~~~~~~------y~~~~~~~l~~~~~~Lk~~g~i~v~~~d-~ 77 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWD-SFDSHNE------FLAFTYRWIDKVLDKLDKDGSLYIFNTP-F 77 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGG-CCSSHHH------HHHHHHHHHHHHHHHEEEEEEEEEEECH-H
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCccccc-ccCCHHH------HHHHHHHHHHHHHHHhcCCeEEEEEcCc-H
Confidence 688999988776666689999999999975311100 0000000 0124567788889999999999986432 2
Q ss_pred CHHHHHHHHHHcCCcE--EEEEec
Q 025207 178 DPSQICLQMMEKGYAA--RIVVQR 199 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~--~~~~~~ 199 (256)
....+...+.+.||.. ..++.+
T Consensus 78 ~~~~~~~~~~~~gf~~~~~iiW~K 101 (260)
T 1g60_A 78 NCAFICQYLVSKGMIFQNWITWDK 101 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECC
T ss_pred HHHHHHHHHHhhccceeEEEEEEe
Confidence 2344556677778754 334533
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=6.7e-05 Score=60.92 Aligned_cols=128 Identities=15% Similarity=0.117 Sum_probs=68.9
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeC--CHHHHHHHHHHHHH
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDI--NPYAVEVTRKTLEA 92 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~-~~~v~giD~--~~~~i~~a~~~~~~ 92 (256)
+-|.-| +.+-..+|.+.. + -+++.+|+|+||+.|.++..+++...- .. .+.++|+|+ .|-... -
T Consensus 52 g~yRSR--AayKL~EIdeK~--l-ikpg~~VVDLGaAPGGWSQvAa~~~~v-g~V~G~vig~D~~~~P~~~~-------~ 118 (269)
T 2px2_A 52 GHPVSR--GTAKLRWLVERR--F-VQPIGKVVDLGCGRGGWSYYAATMKNV-QEVRGYTKGGPGHEEPMLMQ-------S 118 (269)
T ss_dssp SCCSST--HHHHHHHHHHTT--S-CCCCEEEEEETCTTSHHHHHHTTSTTE-EEEEEECCCSTTSCCCCCCC-------S
T ss_pred CCcccH--HHHHHHHHHHcC--C-CCCCCEEEEcCCCCCHHHHHHhhhcCC-CCceeEEEccccccCCCccc-------C
Confidence 344444 344344555543 2 368999999999999998877765110 00 124555552 111000 0
Q ss_pred cCCcc-eEEEc-chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EE
Q 025207 93 HNVHA-DLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WL 169 (256)
Q Consensus 93 ~~~~~-~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l 169 (256)
.|+.. .+..+ |+.+. ....+|+|+|+..=. +... ..+. ...+ .+++.+.+.|+||| .+
T Consensus 119 ~Gv~~i~~~~G~Df~~~----~~~~~DvVLSDMAPn-SG~~-----~vD~--------~Rs~-~aL~~A~~~Lk~gG~~F 179 (269)
T 2px2_A 119 YGWNIVTMKSGVDVFYK----PSEISDTLLCDIGES-SPSA-----EIEE--------QRTL-RILEMVSDWLSRGPKEF 179 (269)
T ss_dssp TTGGGEEEECSCCGGGS----CCCCCSEEEECCCCC-CSCH-----HHHH--------HHHH-HHHHHHHHHHTTCCSEE
T ss_pred CCceEEEeeccCCccCC----CCCCCCEEEeCCCCC-CCcc-----HHHH--------HHHH-HHHHHHHHHhhcCCcEE
Confidence 12222 44446 88763 235799999975211 1111 0010 0012 26777888999999 77
Q ss_pred EEEEeC
Q 025207 170 YLVTLT 175 (256)
Q Consensus 170 ~~~~~~ 175 (256)
++-...
T Consensus 180 vvKVFq 185 (269)
T 2px2_A 180 CIKILC 185 (269)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 774433
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0005 Score=58.45 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=90.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eE-EEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh-cCCCccE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QY-IATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR-LAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v-~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~fD~ 118 (256)
...+++|+.||.|.+.+.+.+. +-++ .+ .++|+++.+++..+.|... .++.+|+.+..... ....+|+
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~a----G~~~~~v~~a~e~d~~a~~ty~~N~~~-----~~~~~DI~~~~~~~i~~~~~Di 79 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERS----SININATFIPFDINEIANKIYSKNFKE-----EVQVKNLDSISIKQIESLNCNT 79 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHS----SCCCCEEEEEECCCHHHHHHHHHHHCC-----CCBCCCTTTCCHHHHHHTCCCE
T ss_pred CCCEEEEECCChhHHHHHHHHc----CCCceEEEEEEECCHHHHHHHHHHCCC-----CcccCChhhcCHHHhccCCCCE
Confidence 4579999999999988777654 2212 45 7999999999998888632 25567776654321 2236999
Q ss_pred EEECCCCCCC--CCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc--ccCeEEEEEEeCCC-----CHHHHHHHHHHc
Q 025207 119 MVVNPPYVPT--PEDEVGREGIASAWAGGENGRAVIDKILPSADKLL--SKRGWLYLVTLTAN-----DPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L--kpgG~l~~~~~~~~-----~~~~~~~~~~~~ 189 (256)
++..||-... +.... .. . ..+.++ ..+..+++.+.+.+ +|. +++++.... ....+.+.+++.
T Consensus 80 l~ggpPCQ~fs~S~ag~--~~---~-~~d~r~-~L~~~~~r~~i~~~~~~P~--~~~lENV~gl~~~~~~~~i~~~l~~~ 150 (327)
T 3qv2_A 80 WFMSPPCQPYNNSIMSK--HK---D-INDPRA-KSVLHLYRDILPYLINKPK--HIFIENVPLFKESLVFKEIYNILIKN 150 (327)
T ss_dssp EEECCCCTTCSHHHHTT--TC---T-TTCGGG-HHHHHHHHTTGGGCSSCCS--EEEEEECGGGGGSHHHHHHHHHHHHT
T ss_pred EEecCCccCcccccCCC--CC---C-Cccccc-hhHHHHHHHHHHHhccCCC--EEEEEchhhhcChHHHHHHHHHHHhC
Confidence 9999997665 22110 00 0 001111 12334444244445 564 333343222 235677888888
Q ss_pred CCcEEEEEe------cCCCCccEEEEEEEec
Q 025207 190 GYAARIVVQ------RSTEEENLHIIKFWRD 214 (256)
Q Consensus 190 g~~~~~~~~------~~~~~~~~~l~~~~~~ 214 (256)
||.+..... ..+..++++++-..++
T Consensus 151 GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~ 181 (327)
T 3qv2_A 151 QYYIKDIICSPIDIGIPNSRTRYYVMARLTP 181 (327)
T ss_dssp TCEEEEEEECGGGGTCSBCCCEEEEEEESSC
T ss_pred CCEEEEEEEeHHHcCCCccceEEEEEEEeCC
Confidence 987654332 1234567666655443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=8.1e-05 Score=59.62 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=73.9
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025207 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
.|..| ..+-.+++.+.. .+ +++.+|+|+||++|.++..++.. .....|+|+|+-..-.+. ...++..|++
T Consensus 58 ~yrSR--a~~KL~ei~ek~-~l--~~g~~VvDLGaapGGWSq~~a~~----~g~~~V~avdvG~~ghe~-P~~~~s~gwn 127 (267)
T 3p8z_A 58 HAVSR--GSAKLQWFVERN-MV--IPEGRVIDLGCGRGGWSYYCAGL----KKVTEVRGYTKGGPGHEE-PVPMSTYGWN 127 (267)
T ss_dssp CCSST--HHHHHHHHHHTT-SS--CCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCC-CCCCCCTTTT
T ss_pred Cccch--HHHHHHHHHHhc-CC--CCCCEEEEcCCCCCcHHHHHHHh----cCCCEEEEEecCCCCccC-cchhhhcCcC
Confidence 44444 344445555554 22 57889999999999998766665 222379999987653321 0011234566
Q ss_pred c-eEEEc-chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 97 A-DLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 97 ~-~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
. .+..+ |+.... ..++|.|+|+.-= .++.. +.+ ..-...+|+.+.+.|++ |.+++
T Consensus 128 ~v~fk~gvDv~~~~----~~~~DtllcDIge-Ss~~~-----~vE---------~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 128 IVKLMSGKDVFYLP----PEKCDTLLCDIGE-SSPSP-----TVE---------ESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp SEEEECSCCGGGCC----CCCCSEEEECCCC-CCSCH-----HHH---------HHHHHHHHHHHGGGCSS-CEEEE
T ss_pred ceEEEeccceeecC----CccccEEEEecCC-CCCCh-----hhh---------hhHHHHHHHHHHHhccc-CCEEE
Confidence 5 88888 875542 2579999997521 11111 111 01123467777888998 55555
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00058 Score=57.88 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=59.7
Q ss_pred eEE-EcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 98 DLI-NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 98 ~~~-~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.++ ++|..+.+....+++||+|+++|||....+. |.....-...+...+..+.++|+|||.+++.....
T Consensus 40 ~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~----------~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 40 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLAD----------WDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGG----------GGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred eEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCC----------ccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 788 9999888766556799999999999754110 11111112346677888999999999999865433
Q ss_pred CC-------HHHHHHHHHHcC-CcE--EEEEec
Q 025207 177 ND-------PSQICLQMMEKG-YAA--RIVVQR 199 (256)
Q Consensus 177 ~~-------~~~~~~~~~~~g-~~~--~~~~~~ 199 (256)
.. ...+...+...| |.. ..++.+
T Consensus 110 ~~~~~~~~~l~~l~~~i~~~G~~~~~~~IIW~K 142 (319)
T 1eg2_A 110 YQGEAGSGDLISIISHMRQNSKMLLANLIIWNY 142 (319)
T ss_dssp CCCCTTBCCHHHHHHHHHHHCCCEEEEEEEEEC
T ss_pred cccccccccHHHHHHHHhCcccceeEEEEEEEC
Confidence 22 145555555555 543 345543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0013 Score=61.49 Aligned_cols=135 Identities=15% Similarity=0.271 Sum_probs=88.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcc---cCC-----CceEEEEeCCH---HHHHHHH-----------HHHHHc-----
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQ---EVP-----GVQYIATDINP---YAVEVTR-----------KTLEAH----- 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~---~~~-----~~~v~giD~~~---~~i~~a~-----------~~~~~~----- 93 (256)
++.-+|+|+|.|+|...+.+.+...+ ..| ..+++++|..| +.+..+- +.+...
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 45679999999999998887775421 112 26799999944 4443321 111111
Q ss_pred C----------CcceEEEcchhhchhhhc---CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025207 94 N----------VHADLINTDIASGLEKRL---AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 94 ~----------~~~~~~~~d~~~~~~~~~---~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
+ +..++..+|+.+.++... ...+|+++.++ |.+.-+++ .| ...++..+.
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~-f~p~~np~--------~w---------~~~~~~~l~ 198 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDG-FAPAKNPD--------MW---------NEQLFNAMA 198 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECS-SCC--CCT--------TC---------SHHHHHHHH
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECC-CCCCCChh--------hh---------hHHHHHHHH
Confidence 1 122688889988876542 47899999976 32222211 11 357888899
Q ss_pred hccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
+++++||.+.. +.....+++.+.+.||......
T Consensus 199 ~~~~~g~~~~t----~~~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 199 RMTRPGGTFST----FTAAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp HHEEEEEEEEE----SCCCHHHHHHHHHTTCEEEEEE
T ss_pred HHhCCCCEEEe----ccCcHHHHHHHHhCCeEEEecc
Confidence 99999998775 3345788999999999876544
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0013 Score=54.47 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=72.0
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.|..| ..+-.+++.+... + +++.+|||+||++|.++..++.. ..-..|+|+|+-..-.+.- ..++..++
T Consensus 73 g~y~SR--~~~KL~ei~~~~~-l--~~~~~VlDLGaapGGwsq~~~~~----~gv~~V~avdvG~~~he~P-~~~~ql~w 142 (321)
T 3lkz_A 73 GHPVSR--GTAKLRWLVERRF-L--EPVGKVIDLGCGRGGWCYYMATQ----KRVQEVRGYTKGGPGHEEP-QLVQSYGW 142 (321)
T ss_dssp CCCSST--HHHHHHHHHHTTS-C--CCCEEEEEETCTTCHHHHHHTTC----TTEEEEEEECCCSTTSCCC-CCCCBTTG
T ss_pred CCccch--HHHHHHHHHHhcC-C--CCCCEEEEeCCCCCcHHHHHHhh----cCCCEEEEEEcCCCCccCc-chhhhcCC
Confidence 445444 3343455555532 2 57789999999999998765554 2223699999876522100 00012233
Q ss_pred cc-eEEEc-chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEE
Q 025207 96 HA-DLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYL 171 (256)
Q Consensus 96 ~~-~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~ 171 (256)
+. .++.+ |+....+ ..+|+|+|+.- -..+... .+ ..-...+|+.+.+.|++| |-+++
T Consensus 143 ~lV~~~~~~Dv~~l~~----~~~D~ivcDig-eSs~~~~-----ve---------~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 143 NIVTMKSGVDVFYRPS----ECCDTLLCDIG-ESSSSAE-----VE---------EHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp GGEEEECSCCTTSSCC----CCCSEEEECCC-CCCSCHH-----HH---------HHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEeccCHhhCCC----CCCCEEEEECc-cCCCChh-----hh---------hhHHHHHHHHHHHHhccCCCcEEE
Confidence 33 66666 7655422 57999999865 1111111 01 011233677778889988 77666
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.40 E-value=7.8e-05 Score=63.39 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.++... ..++..|||+.||+|..++++.++ +.+.+|+|+++..++.+++++...+.....+..|+
T Consensus 239 ~~l~~~~i~~~----~~~~~~VlDpF~GsGtt~~aa~~~------gr~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~ 308 (323)
T 1boo_A 239 AKLPEFFIRML----TEPDDLVVDIFGGSNTTGLVAERE------SRKWISFEMKPEYVAASAFRFLDNNISEEKITDIY 308 (323)
T ss_dssp THHHHHHHHHH----CCTTCEEEETTCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHH
T ss_pred HHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhcccchHHHHHHH
Confidence 34555555443 368899999999999998877665 45899999999999999998876555445555555
Q ss_pred hhc
Q 025207 105 ASG 107 (256)
Q Consensus 105 ~~~ 107 (256)
.+.
T Consensus 309 ~~i 311 (323)
T 1boo_A 309 NRI 311 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0036 Score=52.99 Aligned_cols=149 Identities=14% Similarity=0.104 Sum_probs=90.8
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+|||+.||.|.+.+.+.+. +-+ .+.++|+++.+++.-+.|. +..++.+|+.+..... -..+|+++..||
T Consensus 2 kvidLFsG~GG~~~G~~~a----G~~-~v~a~e~d~~a~~ty~~N~-----~~~~~~~DI~~i~~~~-~~~~D~l~ggpP 70 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA----GFR-IICANEYDKSIWKTYESNH-----SAKLIKGDISKISSDE-FPKCDGIIGGPP 70 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT----TCE-EEEEEECCTTTHHHHHHHC-----CSEEEESCGGGCCGGG-SCCCSEEECCCC
T ss_pred eEEEeCcCccHHHHHHHHC----CCE-EEEEEeCCHHHHHHHHHHC-----CCCcccCChhhCCHhh-CCcccEEEecCC
Confidence 6999999999988776554 222 4789999999998877764 3478889998765432 246899999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------CHHHHHHHHHHcCCcEEEE
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------~~~~~~~~~~~~g~~~~~~ 196 (256)
....+...... -..+.++ ..+..+++ +.+.++|.-.++ +.... ....+...+.+.||.+...
T Consensus 71 CQ~fS~ag~~~------g~~d~R~-~L~~~~~r-~i~~~~Pk~~~~--ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ 140 (331)
T 3ubt_Y 71 SQSWSEGGSLR------GIDDPRG-KLFYEYIR-ILKQKKPIFFLA--ENVKGMMAQRHNKAVQEFIQEFDNAGYDVHII 140 (331)
T ss_dssp GGGTEETTEEC------CTTCGGG-HHHHHHHH-HHHHHCCSEEEE--EECCGGGGCTTSHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCcCCCCCcc------CCCCchh-HHHHHHHH-HHhccCCeEEEe--eeecccccccccchhhhhhhhhccCCcEEEEE
Confidence 76554322100 0011111 12334443 445578863333 43221 2346677788888876443
Q ss_pred Ee------cCCCCccEEEEEEEec
Q 025207 197 VQ------RSTEEENLHIIKFWRD 214 (256)
Q Consensus 197 ~~------~~~~~~~~~l~~~~~~ 214 (256)
.. ..+...+++++-..++
T Consensus 141 vlna~~yGvPQ~R~Rvfivg~r~~ 164 (331)
T 3ubt_Y 141 LLNANDYGVAQDRKRVFYIGFRKE 164 (331)
T ss_dssp EEEGGGTTCSBCCEEEEEEEEEGG
T ss_pred ecccccCCCCcccceEEEEEEcCC
Confidence 31 1244567777766554
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.005 Score=52.42 Aligned_cols=153 Identities=13% Similarity=0.056 Sum_probs=91.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh-cCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR-LAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~fD~Ii~ 121 (256)
.+++|+.||.|.+.+.+... +.+ -.+.++|+++.+++..+.|.. ...++.+|+.+..... ....+|+++.
T Consensus 4 ~~~idLFaG~GG~~~G~~~a----G~~~~~v~a~e~d~~a~~ty~~N~~----~~~~~~~DI~~~~~~~~~~~~~D~l~g 75 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES----GLDGEIVAAVDINTVANSVYKHNFP----ETNLLNRNIQQLTPQVIKKWNVDTILM 75 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH----TCSEEEEEEECCCHHHHHHHHHHCT----TSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred CEEEEECcCccHHHHHHHHc----CCCceEEEEEeCCHHHHHHHHHhCC----CCceeccccccCCHHHhccCCCCEEEe
Confidence 57999999999998877665 222 258899999999988877753 2256778887764322 2246999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc-cCeEEEEEEeCCC-----CHHHHHHHHHHcCCcEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS-KRGWLYLVTLTAN-----DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~-----~~~~~~~~~~~~g~~~~~ 195 (256)
.||-...+...... . ..+.++. .+..+++ +.+.++ |. +++++.... ....+.+.+++.||.+..
T Consensus 76 gpPCQ~fS~ag~~~-~-----~~d~r~~-L~~~~~r-~i~~~~~P~--~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~ 145 (333)
T 4h0n_A 76 SPPCQPFTRNGKYL-D-----DNDPRTN-SFLYLIG-ILDQLDNVD--YILMENVKGFENSTVRNLFIDKLKECNFIYQE 145 (333)
T ss_dssp CCCCCCSEETTEEC-C-----TTCTTSC-CHHHHHH-HGGGCTTCC--EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred cCCCcchhhhhhcc-C-----CcCcccc-cHHHHHH-HHHHhcCCC--EEEEecchhhhhhhHHHHHHHHHHhCCCeEEE
Confidence 99987655422110 0 0111110 1233343 333454 64 333344332 235778888888987654
Q ss_pred EEec------CCCCccEEEEEEEec
Q 025207 196 VVQR------STEEENLHIIKFWRD 214 (256)
Q Consensus 196 ~~~~------~~~~~~~~l~~~~~~ 214 (256)
.... .+..++++++-..++
T Consensus 146 ~vl~a~~~GvPQ~R~R~fiva~r~~ 170 (333)
T 4h0n_A 146 FLLCPSTVGVPNSRLRYYCTARRNN 170 (333)
T ss_dssp EEECTTTTTCSCCCCEEEEEEEETT
T ss_pred EEecHHHcCCCccceEEEEEEEeCC
Confidence 3321 234577777666554
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0015 Score=61.05 Aligned_cols=135 Identities=16% Similarity=0.244 Sum_probs=88.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcc--------cCCCceEEEEeC---CHHHHHHHHH-----------HHHHcC----
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQ--------EVPGVQYIATDI---NPYAVEVTRK-----------TLEAHN---- 94 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~--------~~~~~~v~giD~---~~~~i~~a~~-----------~~~~~~---- 94 (256)
++.-+|+|+|-|+|...+...+...+ .....+++++|. +.+.+..+-. ......
T Consensus 65 ~~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (676)
T 3ps9_A 65 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 144 (676)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCS
T ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCC
Confidence 35579999999999988777665421 112356999998 6666653322 122211
Q ss_pred -----------CcceEEEcchhhchhhhc---CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025207 95 -----------VHADLINTDIASGLEKRL---AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 95 -----------~~~~~~~~d~~~~~~~~~---~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
+..++..+|+.+.++... ...||+++.++ |.+..+++ .| ...++..+.
T Consensus 145 ~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f~p~~np~--------~w---------~~~~~~~l~ 206 (676)
T 3ps9_A 145 GCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-FAPAKNPD--------MW---------TQNLFNAMA 206 (676)
T ss_dssp EEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-SCGGGCGG--------GS---------CHHHHHHHH
T ss_pred CceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-CCCcCChh--------hh---------hHHHHHHHH
Confidence 112577788887776542 46799999975 32221111 11 357889999
Q ss_pred hccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++|||.+.. +.....+++.+.+.||......
T Consensus 207 ~~~~~g~~~~t----~~~~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 207 RLARPGGTLAT----FTSAGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp HHEEEEEEEEE----SCCCHHHHHHHHHHTCEEEEEE
T ss_pred HHhCCCCEEEe----ccCcHHHHHHHHhCCeEEEecc
Confidence 99999999875 3345688999999999866543
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00076 Score=56.49 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=60.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhc--CCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRL--AGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~fD 117 (256)
....+++|+.||.|.+.+.+.+. +.... +.++|+++.+++..+.|.. ...++.+|+.+...... .+.+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a----G~~~~~v~a~E~d~~a~~ty~~N~~----~~~~~~~DI~~i~~~~i~~~~~~D 85 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL----GIQVDRYIASEVCEDSITVGMVRHQ----GKIMYVGDVRSVTQKHIQEWGPFD 85 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT----TBCEEEEEEECCCHHHHHHHHHHTT----TCEEEECCGGGCCHHHHHHTCCCS
T ss_pred CCCCEEEEeCcCccHHHHHHHHC----CCccceEEEEECCHHHHHHHHHhCC----CCceeCCChHHccHHHhcccCCcC
Confidence 46679999999999988777664 33333 6999999999887776642 22577888887643321 24799
Q ss_pred EEEECCCCCCCCC
Q 025207 118 VMVVNPPYVPTPE 130 (256)
Q Consensus 118 ~Ii~npP~~~~~~ 130 (256)
+++..||....+.
T Consensus 86 ll~ggpPCQ~fS~ 98 (295)
T 2qrv_A 86 LVIGGSPCNDLSI 98 (295)
T ss_dssp EEEECCCCGGGBT
T ss_pred EEEecCCCccccc
Confidence 9999999876554
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.001 Score=56.31 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=48.5
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH---HHHHHHHHHHHHcC
Q 025207 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP---YAVEVTRKTLEAHN 94 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~---~~i~~a~~~~~~~~ 94 (256)
|.+=...|++.++... ..++..|||+.||+|..++++.++ +.+.+|+|+++ ..++.+++++...+
T Consensus 224 ~~~kp~~l~~~~i~~~----~~~~~~vlDpF~GsGtt~~aa~~~------~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 224 PTQKPAAVIERLVRAL----SHPGSTVLDFFAGSGVTARVAIQE------GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp TTCCCHHHHHHHHHHH----SCTTCEEEETTCTTCHHHHHHHHH------TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHh----CCCCCEEEecCCCCCHHHHHHHHc------CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 3333456666666654 368899999999999999887776 44899999999 99999999876543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.003 Score=54.44 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=63.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~ 115 (256)
+++.+||-+|+|. |..++.+++.+ ++ .|+++|.+++..+.+++. |.+ .++.. ++.+.......+.
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~-----Ga~~Vi~~~~~~~~~~~a~~l----Ga~-~vi~~~~~~~~~~~~~~~~gg 258 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVC-----GASIIIAVDIVESRLELAKQL----GAT-HVINSKTQDPVAAIKEITDGG 258 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHH-----TCSEEEEEESCHHHHHHHHHH----TCS-EEEETTTSCHHHHHHHHTTSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEECCCHHHHHHHHHc----CCC-EEecCCccCHHHHHHHhcCCC
Confidence 5789999999875 66666666653 34 699999999988887643 433 22222 2222222322347
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-.-. ....+..+.+.|+++|+++++.
T Consensus 259 ~D~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 259 VNFALESTG---------------------------SPEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EEEEEECSC---------------------------CHHHHHHHHHTEEEEEEEEECC
T ss_pred CcEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEeC
Confidence 999987422 1345778889999999998854
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0042 Score=52.77 Aligned_cols=95 Identities=22% Similarity=0.251 Sum_probs=63.3
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
+++.+||-.|+|. |..++.+++.+ +++|+++|.+++..+.+++ .|.+ .++.. |+.+.... ..+.+
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~Vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~~~~~-~~g~~ 233 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAM-----GLRVAAVDIDDAKLNLARR----LGAE-VAVNARDTDPAAWLQK-EIGGA 233 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHH----TTCS-EEEETTTSCHHHHHHH-HHSSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-----CCeEEEEeCCHHHHHHHHH----cCCC-EEEeCCCcCHHHHHHH-hCCCC
Confidence 6889999999864 66666666652 5699999999998887754 3433 22221 22222222 12478
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+.+.. ....+..+.+.|+++|+++++.
T Consensus 234 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 234 HGVLVTAV---------------------------SPKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp EEEEESSC---------------------------CHHHHHHHHHHEEEEEEEEECS
T ss_pred CEEEEeCC---------------------------CHHHHHHHHHHhccCCEEEEeC
Confidence 99987422 1356778888999999998853
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.014 Score=49.98 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=61.6
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc------hhhchhhhc
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTD------IASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d------~~~~~~~~~ 112 (256)
+++.+||-+|+|. |..++.+++.+ ++ +|+++|.+++..+.+++ .|.+ .++..+ ..+......
T Consensus 170 ~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~-~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 170 TLGHKVLVCGAGPIGMVTLLVAKAM-----GAAQVVVTDLSATRLSKAKE----IGAD-LVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEEESCHHHHHHHHH----TTCS-EEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHH----hCCC-EEEcCcccccchHHHHHHHHh
Confidence 5789999999764 55555555542 45 89999999998887754 3443 233221 222222211
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
...+|+|+-... ....+..+.++|+++|+++++.
T Consensus 240 ~~g~D~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 240 GCKPEVTIECTG---------------------------AEASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp TSCCSEEEECSC---------------------------CHHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCC---------------------------ChHHHHHHHHHhcCCCEEEEEe
Confidence 256999987422 1345677888999999998854
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.027 Score=48.63 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=79.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+.+||.++.+.|.++..++.. .++.+.-|--....++.|+..|++.. .+...+..+. ..+.+|+|+
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~--------~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~~----~~~~~~~v~ 105 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH--------KPYSIGDSYISELATRENLRLNGIDESSVKFLDSTAD----YPQQPGVVL 105 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG--------CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTSC----CCSSCSEEE
T ss_pred CCCCEEEECCCCCHHHHhhccC--------CceEEEhHHHHHHHHHHHHHHcCCCccceEecccccc----cccCCCEEE
Confidence 4578999999999987665432 34555446666678889999999875 3444443332 246899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
...| +....+...+..+...|++|+.+++............+.+.+.
T Consensus 106 ~~lp----------------------k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~ 152 (375)
T 4dcm_A 106 IKVP----------------------KTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKV 152 (375)
T ss_dssp EECC----------------------SCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHH
T ss_pred EEcC----------------------CCHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhh
Confidence 8655 1234467778899999999999988766555555666777665
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0069 Score=52.18 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=62.3
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEE---Ecchhhchhh---hc
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEK---RL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~---~~ 112 (256)
+++.+||=.|+|. |..++.+++.+ ++ .|+++|.+++..+.+++ .|.+. ++ ..|+.+.... ..
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~~-vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARLA-----GATTVILSTRQATKRRLAEE----VGATA-TVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCHHHHHHHHH----HTCSE-EECTTSSCHHHHHHSTTSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHH----cCCCE-EECCCCcCHHHHHHhhhhcc
Confidence 5789999998753 55555555542 44 89999999998887765 34432 22 2233332222 22
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.+|+|+-.-. ....+..+.++|++||+++++.
T Consensus 251 ~gg~Dvvid~~G---------------------------~~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 251 PGGVDVVIECAG---------------------------VAETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp TTCEEEEEECSC---------------------------CHHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCCEEEECCC---------------------------CHHHHHHHHHHhccCCEEEEEe
Confidence 347999987421 1355778888999999999854
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.12 Score=44.97 Aligned_cols=166 Identities=10% Similarity=-0.015 Sum_probs=90.4
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCc---eEEEEeCCHHHHHHHHHHHHHcCCc-----------------------
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGV---QYIATDINPYAVEVTRKTLEAHNVH----------------------- 96 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~---~v~giD~~~~~i~~a~~~~~~~~~~----------------------- 96 (256)
..+|+|+.||.|.+...+.+.... .++ .|.++|+++.+++.-+.|.......
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~--~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~ 87 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARS--KNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEY 87 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHH--HTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHH
T ss_pred cceEEEEecCcCHHHHHHHHhCCc--cccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhcccccccccccc
Confidence 469999999999988877765210 011 2888999999999888776432100
Q ss_pred ---------c-eE---------EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH
Q 025207 97 ---------A-DL---------INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP 157 (256)
Q Consensus 97 ---------~-~~---------~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (256)
. .+ ..+|+.+......++.+|+++..||-...+.........+. .+.++ ..+..+++
T Consensus 88 ~i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip~~vDll~ggpPCQ~fS~ag~~~g~~d~---~~~r~-~L~~~~~r 163 (403)
T 4dkj_A 88 GIKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKE---LNTRS-GLLWEIER 163 (403)
T ss_dssp HHHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSCSSCSEEEECCCCTTTCTTSCCCCCCGG---GCCSG-GGHHHHHH
T ss_pred ccccccHHHHHHHHhhcccCCCcccchhhcCHhhCCCCCcEEEEeCCCCCHHHhCCCCCCCcc---ccccc-hhHHHHHH
Confidence 0 00 23666665433334568999999998665543211000000 00111 11233333
Q ss_pred HHhh-------ccccCeEEEEEEeCCCC------HHHHHHHHHHcCCcEEEEEe------cCCCCccEEEEEEEec
Q 025207 158 SADK-------LLSKRGWLYLVTLTAND------PSQICLQMMEKGYAARIVVQ------RSTEEENLHIIKFWRD 214 (256)
Q Consensus 158 ~~~~-------~LkpgG~l~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~l~~~~~~ 214 (256)
-+.. .++|.-+++=..+.... ...+...|++.||.+..... ..+...+++++...++
T Consensus 164 ii~~~~~k~~~~~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~ 239 (403)
T 4dkj_A 164 ILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDD 239 (403)
T ss_dssp HHHHHHHHSCGGGSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHH
T ss_pred HHHHhhhhhccccCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCC
Confidence 3332 26775443322222221 23677778888987644321 1234577777766654
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.01 Score=51.94 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=41.9
Q ss_pred CCCCEEEEecccccHHHHHHH-HHhcccCC-CceEEEEeCCHHHHHHHHHHHHH
Q 025207 41 HHPVLCMEVGCGSGYVITSLA-LMLGQEVP-GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la-~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
+++..|+|+|++.|..++.++ +. .+ .++|+++|.+|..++.+++|+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~----~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVT----KGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHH----TSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHh----cCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 578999999999999998877 44 33 36999999999999999999988
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.048 Score=48.66 Aligned_cols=163 Identities=16% Similarity=0.155 Sum_probs=87.6
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh-----------
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK----------- 110 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~----------- 110 (256)
.-+++|+.||.|.+.+.+.+. +. .+.++|+++.+++.-+.|.... ....++.+|+.+....
T Consensus 88 ~~~viDLFaG~GGlslG~~~a------G~~~v~avE~d~~A~~ty~~N~~~~-p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI------GGQCVFTSEWNKHAVRTYKANHYCD-PATHHFNEDIRDITLSHQEGVSDEAAA 160 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT------TEEEEEEECCCHHHHHHHHHHSCCC-TTTCEEESCTHHHHCTTCTTSCHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC------CCEEEEEEeCCHHHHHHHHHhcccC-CCcceeccchhhhhhccccccchhhHH
Confidence 479999999999987666543 33 4899999999988777764211 1225777888766421
Q ss_pred ----hcCCCccEEEECCCCCCCCCcccccccc---hhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------
Q 025207 111 ----RLAGLVDVMVVNPPYVPTPEDEVGREGI---ASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------ 177 (256)
Q Consensus 111 ----~~~~~fD~Ii~npP~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------ 177 (256)
.....+|+++..||....+......... ...+.++..+ ..+..+++- .+.++|.-+++=..+...
T Consensus 161 ~~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~-~Lf~e~~ri-I~~~rPk~fvlENV~gl~s~~~g~ 238 (482)
T 3me5_A 161 EHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQG-TLFFDVVRI-IDARRPAMFVLENVKNLKSHDKGK 238 (482)
T ss_dssp HHHHHHSCCCSEEEEECCCCCC------------------CTTTT-SHHHHHHHH-HHHHCCSEEEEEEETTTTTGGGGH
T ss_pred hhhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccc-cHHHHHHHH-HHHcCCcEEEEeCcHHHhcccCCc
Confidence 0124689999999977655432111000 0011111111 123333433 335678533332222221
Q ss_pred CHHHHHHHHHHcCCcEE-----------EEEe---cCCCCccEEEEEEEec
Q 025207 178 DPSQICLQMMEKGYAAR-----------IVVQ---RSTEEENLHIIKFWRD 214 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~-----------~~~~---~~~~~~~~~l~~~~~~ 214 (256)
....+...|.+.||.+. .+.. ..+...+++++-..++
T Consensus 239 ~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~ 289 (482)
T 3me5_A 239 TFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRD 289 (482)
T ss_dssp HHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGG
T ss_pred HHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecC
Confidence 12356777888887653 1111 2344667777766654
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.017 Score=49.02 Aligned_cols=97 Identities=10% Similarity=0.044 Sum_probs=60.5
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch-hhchhhhc-CCCccE
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI-ASGLEKRL-AGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~-~~~fD~ 118 (256)
++.+||-+|+|. |..++.+++. .+|+++|+++|.+++..+.+++ .|.+ .++..+- .+...... ...+|+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~---~~~Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~g~g~D~ 241 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKA---LMKNITIVGISRSKKHRDFALE----LGAD-YVSEMKDAESLINKLTDGLGASI 241 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHH---HCTTCEEEEECSCHHHHHHHHH----HTCS-EEECHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---hcCCCEEEEEeCCHHHHHHHHH----hCCC-EEeccccchHHHHHhhcCCCccE
Confidence 689999999853 4444444444 2346789999999998887765 3432 2222111 11111221 237999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+..-. ....+..+.+.|+++|+++++.
T Consensus 242 vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 242 AIDLVG---------------------------TEETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp EEESSC---------------------------CHHHHHHHHHHEEEEEEEEECC
T ss_pred EEECCC---------------------------ChHHHHHHHHHhhcCCEEEEeC
Confidence 987422 1235777888999999998754
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.19 Score=48.80 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=88.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc--eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh---------
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV--QYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--------- 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~--~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--------- 109 (256)
....+++|+.||.|.+++.+.+. |. .+.++|+++.+++.-+.|.. ...++.+|+.+...
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~A------G~~~vv~avEid~~A~~ty~~N~p----~~~~~~~DI~~l~~~~~~~di~~ 607 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQA------GISDTLWAIEMWDPAAQAFRLNNP----GSTVFTEDCNILLKLVMAGETTN 607 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHH------TSEEEEEEECSSHHHHHHHHHHCT----TSEEECSCHHHHHHHHHHTCSBC
T ss_pred CCCCeEEEeccCccHHHHHHHHC------CCCceEEEEECCHHHHHHHHHhCC----CCccccccHHHHhhhccchhhhh
Confidence 45579999999999998877665 33 58899999999887776642 22566677644310
Q ss_pred ----hh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------C
Q 025207 110 ----KR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------D 178 (256)
Q Consensus 110 ----~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~ 178 (256)
.. ..+.+|+|+..||-...+....... ....+ .++ ..+..+++ +.+.++|.-+++=..+... .
T Consensus 608 ~~~~~lp~~~~vDll~GGpPCQ~FS~ag~~~~---~~~~d-~R~-~L~~~~~r-iv~~~rPk~~llENV~glls~~~~~~ 681 (1002)
T 3swr_A 608 SRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNS---RTYSK-FKN-SLVVSFLS-YCDYYRPRFFLLENVRNFVSFKRSMV 681 (1002)
T ss_dssp TTCCBCCCTTTCSEEEECCCCTTCCSSSCCCH---HHHHH-HTT-SHHHHHHH-HHHHHCCSEEEEEEEGGGGTTGGGHH
T ss_pred hhhhhcccCCCeeEEEEcCCCcchhhhCCCCC---Ccccc-hhh-HHHHHHHH-HHHHhCCCEEEEeccHHHhccCcchH
Confidence 01 1246999999999876654321100 00000 000 01233333 3345677644442222221 1
Q ss_pred HHHHHHHHHHcCCcEEEEEe------cCCCCccEEEEEEEe
Q 025207 179 PSQICLQMMEKGYAARIVVQ------RSTEEENLHIIKFWR 213 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~l~~~~~ 213 (256)
...+...|.+.||.+..... ..+...+++++-..+
T Consensus 682 ~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fiva~r~ 722 (1002)
T 3swr_A 682 LKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP 722 (1002)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEGGGGTCSBCCEEEEEEEECT
T ss_pred HHHHHHHHHhcCCeEEEEEEEHHHCCCCccceEEEEEEEeC
Confidence 24567778888987654321 123456666665443
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0058 Score=53.18 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=62.6
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---ch-hhchhhhcCC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT---DI-ASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~-~~~~~~~~~~ 114 (256)
+++.+||-+|+|. |..++.+++.+ ++ +|+++|.+++..+.+++ .|. .++.. |. .+.......+
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa--~~i~~~~~~~~~~~~~~~~~g 252 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLL-----GAACVIVGDQNPERLKLLSD----AGF--ETIDLRNSAPLRDQIDQILGK 252 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-----TCSEEEEEESCHHHHHHHHT----TTC--EEEETTSSSCHHHHHHHHHSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHHH----cCC--cEEcCCCcchHHHHHHHHhCC
Confidence 5789999999865 66666666653 45 89999999998887653 344 23322 21 2222222223
Q ss_pred -CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 -LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 -~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-.-.-...... ....+ .. ....+..+.+.|+++|+++++.
T Consensus 253 ~g~Dvvid~~g~~~~~~~------~~~~~---~~----~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 253 PEVDCGVDAVGFEAHGLG------DEANT---ET----PNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp SCEEEEEECSCTTCBCSG------GGTTS---BC----TTHHHHHHHHHEEEEEEEECCS
T ss_pred CCCCEEEECCCCcccccc------ccccc---cc----cHHHHHHHHHHHhcCCEEEEec
Confidence 69999874321000000 00000 00 0134777888999999998754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.011 Score=45.84 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=57.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhh-cCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKR-LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~-~~~~f 116 (256)
+++++||..|++ |.++..+++.+... +++|+++|.+++..+.+++ .+.. .+.. .+..+..... ....+
T Consensus 37 ~~g~~vlV~Ga~-ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~-~~~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 37 SPGERVLIHSAT-GGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVE-YVGDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp CTTCEEEETTTT-SHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCS-EEEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCEEEEeeCC-ChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC-EEeeCCcHHHHHHHHHHhCCCCC
Confidence 578999999953 22333344443322 5689999999887766543 3432 1221 1221211121 12469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.+.. ...+..+.+.|+++|+++++.
T Consensus 109 D~vi~~~g----------------------------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 109 DVVLNSLA----------------------------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEEEECCC----------------------------THHHHHHHHTEEEEEEEEECS
T ss_pred eEEEECCc----------------------------hHHHHHHHHHhccCCEEEEEc
Confidence 99987521 134677788999999998853
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.018 Score=49.06 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=60.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhc---
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRL--- 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~--- 112 (256)
+++.+||-.|+|. |..++.+++. -+++|+++|.+++..+.+++ .|.+ .++. .+..+......
T Consensus 167 ~~g~~VlV~GaG~vG~~a~qla~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~~~~~~~~~~~~~~i~~~~~~~ 236 (352)
T 1e3j_A 167 QLGTTVLVIGAGPIGLVSVLAAKA-----YGAFVVCTARSPRRLEVAKN----CGAD-VTLVVDPAKEEESSIIERIRSA 236 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCHHHHHHHHH----TTCS-EEEECCTTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCEEEEEcCCHHHHHHHHH----hCCC-EEEcCcccccHHHHHHHHhccc
Confidence 5789999999753 4454444443 25679999999998887753 3443 2222 12222222211
Q ss_pred -CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 -AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 -~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
...+|+|+.... ....+..+.+.|+++|+++++.
T Consensus 237 ~g~g~D~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 237 IGDLPNVTIDCSG---------------------------NEKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SSSCCSEEEECSC---------------------------CHHHHHHHHHHSCTTCEEEECS
T ss_pred cCCCCCEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 246999987532 1245677788999999998854
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.017 Score=48.77 Aligned_cols=97 Identities=9% Similarity=0.060 Sum_probs=58.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~f 116 (256)
+++++||-.|++. .++..+++.+.. .+++|+++|.+++..+.+++ .+.. .++. .++.+.......+.+
T Consensus 144 ~~g~~vlV~Ga~g-giG~~~~~~~~~--~G~~V~~~~~~~~~~~~~~~----~g~~-~~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 144 KGGETVLVSAAAG-AVGSVVGQIAKL--KGCKVVGAAGSDEKIAYLKQ----IGFD-AAFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp CSSCEEEEESTTB-HHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TTCS-EEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCCEEEEecCCC-cHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHh----cCCc-EEEecCCHHHHHHHHHHHhCCCC
Confidence 5789999999732 233334444332 25699999999988777632 2432 1221 122222222223579
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 216 d~vi~~~g----------------------------~~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 216 DCYFDNVG----------------------------GEFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEEESSC----------------------------HHHHHHHHTTEEEEEEEEECC
T ss_pred eEEEECCC----------------------------hHHHHHHHHHHhcCCEEEEEe
Confidence 99988622 123677788999999998754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.017 Score=49.02 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=63.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc--chhhchhhhc-CCCc
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT--DIASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~--d~~~~~~~~~-~~~f 116 (256)
+++.+||=.|+|. |..++.+++.+ .+.+|+++|.+++..+.+++ .|.+. ++.. +..+...... ...+
T Consensus 170 ~~g~~vlv~GaG~vG~~a~qla~~~----g~~~Vi~~~~~~~~~~~~~~----lGa~~-~i~~~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 170 GPGSTAVVIGVGGLGHVGIQILRAV----SAARVIAVDLDDDRLALARE----VGADA-AVKSGAGAADAIRELTGGQGA 240 (345)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH----CCCEEEEEESCHHHHHHHHH----TTCSE-EEECSTTHHHHHHHHHGGGCE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCHHHHHHHHH----cCCCE-EEcCCCcHHHHHHHHhCCCCC
Confidence 5789999999864 55666666553 25699999999998887764 34432 2221 2222222221 2379
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+-.-. -...+..+.+.|+++|+++++.
T Consensus 241 d~v~d~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 241 TAVFDFVG---------------------------AQSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEEESSC---------------------------CHHHHHHHHHHEEEEEEEEECS
T ss_pred eEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEC
Confidence 99987422 1346788889999999999854
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0088 Score=51.05 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=60.2
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcC-C
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLA-G 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~-~ 114 (256)
+++.+||=+|+|. |..++.+++. .++ +|+++|.+++..+.+++. |.+ .++. .|+.+....... .
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~-----~Ga~~Vi~~~~~~~~~~~~~~l----Ga~-~vi~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANH-----LGAGRIFAVGSRKHCCDIALEY----GAT-DIINYKNGDIVEQILKATDGK 234 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHT-----TTCSSEEEECCCHHHHHHHHHH----TCC-EEECGGGSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEECCCHHHHHHHHHh----CCc-eEEcCCCcCHHHHHHHHcCCC
Confidence 5788999998753 4444444443 245 799999999988877653 433 2222 233333323222 3
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-.-. -...+..+.+.|+++|+++++.
T Consensus 235 g~D~v~d~~g---------------------------~~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 235 GVDKVVIAGG---------------------------DVHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp CEEEEEECSS---------------------------CTTHHHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEec
Confidence 6999987321 1134777888999999999754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.028 Score=48.30 Aligned_cols=96 Identities=25% Similarity=0.251 Sum_probs=60.8
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~ 113 (256)
+++.+||-.|+|. |..++.+++.+ ++ +|+++|.+++..+.+++ .|.+ .++.. ++.+.......
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSA-----GAKRIIAVDLNPDKFEKAKV----FGAT-DFVNPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCGGGHHHHHH----TTCC-EEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHHH----hCCc-eEEeccccchhHHHHHHHHhC
Confidence 5789999999753 44554555442 45 79999999998887753 3443 22211 22222222223
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.++|+++ |+++++.
T Consensus 261 ~g~D~vid~~g---------------------------~~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 261 GGVDFSLECVG---------------------------NVGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp SCBSEEEECSC---------------------------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCEEEECCC---------------------------CHHHHHHHHHHhhcCCcEEEEEc
Confidence 47999987422 134577888899999 9998754
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.032 Score=47.95 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=61.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~ 113 (256)
+++.+||-+|+|. |..++.+++.+ ++ +|+++|.+++..+.+++ .|.+ .++.. ++.+.......
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~-~vi~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAA-----GASRIIGVGTHKDKFPKAIE----LGAT-ECLNPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-----TCSEEEEECSCGGGHHHHHH----TTCS-EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEECCCHHHHHHHHH----cCCc-EEEecccccchHHHHHHHHhC
Confidence 5789999999753 45555555543 44 79999999988887754 3443 22221 23222223223
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.+.|+++ |+++++.
T Consensus 260 gg~Dvvid~~g---------------------------~~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 260 GGVDYAVECAG---------------------------RIETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp SCBSEEEECSC---------------------------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred CCCCEEEECCC---------------------------CHHHHHHHHHHHhcCCCEEEEEc
Confidence 47999987421 134577888899999 9998754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.19 Score=36.53 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=69.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii 120 (256)
..+|+=+|| |.++..+++.|.+. +..|+++|.+++.++.+++ .+. .++.+|..+.. ....-..+|+++
T Consensus 7 ~~~viIiG~--G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~----~g~--~~i~gd~~~~~~l~~a~i~~ad~vi 76 (140)
T 3fwz_A 7 CNHALLVGY--GRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRE----RGV--RAVLGNAANEEIMQLAHLECAKWLI 76 (140)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH----TTC--EEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred CCCEEEECc--CHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH----cCC--CEEECCCCCHHHHHhcCcccCCEEE
Confidence 456777776 66777778877643 5689999999998887654 232 67888876542 121124689998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
+..|- +.....+-...+.+.|+..++.... ..+..+.+++.|...
T Consensus 77 ~~~~~------------------------~~~n~~~~~~a~~~~~~~~iiar~~----~~~~~~~l~~~G~d~ 121 (140)
T 3fwz_A 77 LTIPN------------------------GYEAGEIVASARAKNPDIEIIARAH----YDDEVAYITERGANQ 121 (140)
T ss_dssp ECCSC------------------------HHHHHHHHHHHHHHCSSSEEEEEES----SHHHHHHHHHTTCSE
T ss_pred EECCC------------------------hHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCCCE
Confidence 75331 0112223334556778887665332 234456777777654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.086 Score=42.97 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=70.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhc---ccCCCceEEEEe-----CCHH-------------------HHHHHHHHH---
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLG---QEVPGVQYIATD-----INPY-------------------AVEVTRKTL--- 90 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~---~~~~~~~v~giD-----~~~~-------------------~i~~a~~~~--- 90 (256)
.-++.|+|.||-.|.-++.++.+.. ...++.+|+++| ..+. ..+..++.+
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 4568999999999998777665422 123456899999 2210 011122211
Q ss_pred ---HHcCC---cceEEEcchhhchhhh----cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025207 91 ---EAHNV---HADLINTDIASGLEKR----LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 91 ---~~~~~---~~~~~~~d~~~~~~~~----~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
...+. +.+++.+++.+.++.+ ...+||++..+.-. -......++.+.
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-----------------------Y~~t~~~le~~~ 204 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-----------------------YEPTKAVLEAIR 204 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-----------------------HHHHHHHHHHHG
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-----------------------cchHHHHHHHHH
Confidence 12232 2389999999887653 23579999886311 122456788899
Q ss_pred hccccCeEEEE
Q 025207 161 KLLSKRGWLYL 171 (256)
Q Consensus 161 ~~LkpgG~l~~ 171 (256)
..|+|||++++
T Consensus 205 p~l~~GGvIv~ 215 (257)
T 3tos_A 205 PYLTKGSIVAF 215 (257)
T ss_dssp GGEEEEEEEEE
T ss_pred HHhCCCcEEEE
Confidence 99999999998
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.028 Score=47.78 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=60.0
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~ 114 (256)
+++++||-.|+ |.|.....+++. .+++|+++|.+++..+.+++ .+.. .++. .++.+.......+
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~-----~Ga~V~~~~~~~~~~~~~~~----~g~~-~~~d~~~~~~~~~~~~~~~~~ 237 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKA-----MGYRVLGIDGGEGKEELFRS----IGGE-VFIDFTKEKDIVGAVLKATDG 237 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEECSTTHHHHHHH----TTCC-EEEETTTCSCHHHHHHHHHTS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCCcEEEEcCCHHHHHHHHH----cCCc-eEEecCccHhHHHHHHHHhCC
Confidence 57899999997 344444444433 25699999998887766654 3432 2221 1222222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+|+++.+-. ....++.+.+.|+++|+++.+..
T Consensus 238 ~~D~vi~~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 238 GAHGVINVSV---------------------------SEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp CEEEEEECSS---------------------------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred CCCEEEECCC---------------------------cHHHHHHHHHHHhcCCEEEEEeC
Confidence 7999988632 13457888899999999987543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.021 Score=48.32 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=60.8
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 115 (256)
+++++||-.|+ |.|...+.+++. .+++|+++|.+++..+.+.+ ..+.. .++. .++.+.......+.
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~---~~g~~-~~~~~~~~~~~~~~~~~~~~~ 218 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARL-----KGCRVVGIAGGAEKCRFLVE---ELGFD-GAIDYKNEDLAAGLKRECPKG 218 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH---TTCCS-EEEETTTSCHHHHHHHHCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH---HcCCC-EEEECCCHHHHHHHHHhcCCC
Confidence 57899999998 345555444443 25699999999988777632 23432 2222 22222222222357
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 219 ~d~vi~~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 219 IDVFFDNVG----------------------------GEILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp EEEEEESSC----------------------------HHHHHHHHTTEEEEEEEEECC
T ss_pred ceEEEECCC----------------------------cchHHHHHHHHhhCCEEEEEe
Confidence 999987521 135777888999999999854
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.89 E-value=0.041 Score=47.28 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=60.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~ 113 (256)
+++.+||-.|+|. |..++.+++. .++ +|+++|.+++..+.+++ .|.+ .++.. ++.+.......
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~-----~Ga~~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKA-----AGAARIIGVDINKDKFAKAKE----VGAT-ECVNPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSCGGGHHHHHH----TTCS-EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCCeEEEEcCCHHHHHHHHH----hCCc-eEecccccchhHHHHHHHHhC
Confidence 5789999999753 4444444444 245 79999999988887753 3443 22221 22222222223
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.+.|+++ |+++++.
T Consensus 260 ~g~D~vid~~g---------------------------~~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 260 GGVDFSFEVIG---------------------------RLDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp SCBSEEEECSC---------------------------CHHHHHHHHHHBCTTTCEEEECS
T ss_pred CCCcEEEECCC---------------------------CHHHHHHHHHHhhcCCcEEEEec
Confidence 47999987422 134577788899999 9998754
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.026 Score=47.84 Aligned_cols=95 Identities=23% Similarity=0.254 Sum_probs=59.9
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~f 116 (256)
+++.+||-.|+| .|..++.+++. .+++|+++|.+++..+.+++ .|.+ .++. .|+.+...... +.+
T Consensus 163 ~~g~~VlV~GaG~vG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~~~d~~~~~~~~~~~~~~-~~~ 231 (339)
T 1rjw_A 163 KPGEWVAIYGIGGLGHVAVQYAKA-----MGLNVVAVDIGDEKLELAKE----LGAD-LVVNPLKEDAAKFMKEKV-GGV 231 (339)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHH-----TTCEEEEECSCHHHHHHHHH----TTCS-EEECTTTSCHHHHHHHHH-SSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHH----CCCC-EEecCCCccHHHHHHHHh-CCC
Confidence 578999999985 24444444443 25699999999998887753 3432 2221 12222222212 479
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+.+-. ....+..+.+.|+++|+++++.
T Consensus 232 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 232 HAAVVTAV---------------------------SKPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp EEEEESSC---------------------------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEec
Confidence 99987532 1245677888999999998754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.019 Score=48.90 Aligned_cols=99 Identities=23% Similarity=0.266 Sum_probs=60.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcC-CCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLA-GLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~-~~f 116 (256)
+++++||-.|+|+| ++..+++.+... .+++|+++|.+++..+.+++ .+.+ .++.. +..+....... +.+
T Consensus 169 ~~g~~vlV~Gagg~-iG~~~~~~a~~~-~Ga~Vi~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 1jvb_A 169 DPTKTLLVVGAGGG-LGTMAVQIAKAV-SGATIIGVDVREEAVEAAKR----AGAD-YVINASMQDPLAEIRRITESKGV 241 (347)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCCcc-HHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----hCCC-EEecCCCccHHHHHHHHhcCCCc
Confidence 57899999998633 233333333322 15689999999988887754 2432 22221 11111222222 579
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.+-. ....+..+.+.|+++|+++++.
T Consensus 242 d~vi~~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 242 DAVIDLNN---------------------------SEKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp EEEEESCC---------------------------CHHHHTTGGGGEEEEEEEEECC
T ss_pred eEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEC
Confidence 99988532 1345777889999999998854
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.017 Score=49.71 Aligned_cols=96 Identities=22% Similarity=0.213 Sum_probs=61.1
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~ 113 (256)
+++.+||-.|+|. |..++.+++.+ ++ +|+++|.+++..+.+++ .|.+ .++.. ++.+.......
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~-----Ga~~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~v~~~~~ 258 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVA-----GASRIIGVDINKDKFARAKE----FGAT-ECINPQDFSKPIQEVLIEMTD 258 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-----TCSEEEEECSCGGGHHHHHH----HTCS-EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHHH----cCCc-eEeccccccccHHHHHHHHhC
Confidence 5789999999753 44555555442 45 79999999998887764 3433 22221 22222222223
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.+.|+++ |+++++.
T Consensus 259 ~g~D~vid~~g---------------------------~~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 259 GGVDYSFECIG---------------------------NVKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp SCBSEEEECSC---------------------------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCEEEECCC---------------------------cHHHHHHHHHhhccCCcEEEEEe
Confidence 47999987422 134577888899999 9998754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.022 Score=48.69 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=61.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEE-----Ecchhhchhhhc-
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLI-----NTDIASGLEKRL- 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~-----~~d~~~~~~~~~- 112 (256)
+++.+||=.|+|. |..++.+++.+ ++. |+++|.+++..+.+++. .. .. .... ..|+.+......
T Consensus 178 ~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~l-~~-~~-~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 178 RLGDPVLICGAGPIGLITMLCAKAA-----GACPLVITDIDEGRLKFAKEI-CP-EV-VTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHT-----TCCSEEEEESCHHHHHHHHHH-CT-TC-EEEECCSCCHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHHh-ch-hc-ccccccccchHHHHHHHHHHhC
Confidence 5788999998753 55555555542 455 99999999999988764 11 10 0111 123333222222
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
...+|+|+-.-. -...+..+.++|+++|+++++.
T Consensus 250 g~g~Dvvid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 250 GIEPAVALECTG---------------------------VESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp SCCCSEEEECSC---------------------------CHHHHHHHHHHSCTTCEEEECC
T ss_pred CCCCCEEEECCC---------------------------ChHHHHHHHHHhcCCCEEEEEc
Confidence 347999987421 1345777888999999999864
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.023 Score=48.89 Aligned_cols=96 Identities=21% Similarity=0.196 Sum_probs=62.3
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE-----cchhhchhhhcC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN-----TDIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~-----~d~~~~~~~~~~ 113 (256)
+++.+||=+|+|. |..++.+++.+ ++ +|+++|.+++.++.+++ .|.+ .++. .++.+.......
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~-~vi~~~~~~~~~~~~i~~~~~ 261 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTA-----GASRIIGIDIDSKKYETAKK----FGVN-EFVNPKDHDKPIQEVIVDLTD 261 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHH-----TCSCEEEECSCTTHHHHHHT----TTCC-EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHHH----cCCc-EEEccccCchhHHHHHHHhcC
Confidence 5788999998853 55555555543 44 79999999998887653 3433 2222 223333333334
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.+.|++| |+++++.
T Consensus 262 gg~D~vid~~g---------------------------~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 262 GGVDYSFECIG---------------------------NVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp SCBSEEEECSC---------------------------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCEEEECCC---------------------------CHHHHHHHHHHhhccCCEEEEEc
Confidence 58999987422 135578888899997 9998854
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.047 Score=46.89 Aligned_cols=96 Identities=21% Similarity=0.178 Sum_probs=60.6
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~ 113 (256)
+++.+||-+|+|. |..++.+++.+ ++ +|+++|.+++..+.+++ .|.+ .++.. ++.+.......
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~-~vi~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIA-----GASRIIAIDINGEKFPKAKA----LGAT-DCLNPRELDKPVQDVITELTA 263 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCGGGHHHHHH----TTCS-EEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHHH----hCCc-EEEccccccchHHHHHHHHhC
Confidence 5789999999752 44544444442 45 79999999988887653 3443 22221 22222222223
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.+.|+++ |+++++.
T Consensus 264 ~g~Dvvid~~G---------------------------~~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 264 GGVDYSLDCAG---------------------------TAQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp SCBSEEEESSC---------------------------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred CCccEEEECCC---------------------------CHHHHHHHHHHhhcCCCEEEEEC
Confidence 47999987421 134577888899999 9998754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.024 Score=48.78 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=58.8
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++.+||-+|+|. |..++.+++. .+++|+++|.+++..+.+++ .|.+ .++..+-.+..... ...+|+|
T Consensus 193 ~~g~~VlV~GaG~vG~~aiqlak~-----~Ga~Vi~~~~~~~~~~~a~~----lGa~-~vi~~~~~~~~~~~-~~g~Dvv 261 (369)
T 1uuf_A 193 GPGKKVGVVGIGGLGHMGIKLAHA-----MGAHVVAFTTSEAKREAAKA----LGAD-EVVNSRNADEMAAH-LKSFDFI 261 (369)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSGGGHHHHHH----HTCS-EEEETTCHHHHHTT-TTCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH----cCCc-EEeccccHHHHHHh-hcCCCEE
Confidence 5789999999863 4555555544 25689999999988887764 3433 23222111111111 2579999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+..-.- ...+..+.+.|+++|+++.+.
T Consensus 262 id~~g~---------------------------~~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 262 LNTVAA---------------------------PHNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp EECCSS---------------------------CCCHHHHHTTEEEEEEEEECC
T ss_pred EECCCC---------------------------HHHHHHHHHHhccCCEEEEec
Confidence 874220 112566778999999988754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.02 Score=48.60 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=59.8
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CC
Q 025207 41 HHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG--~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~ 114 (256)
+++.+||-.|+| .|..++.+++.. +++|+++|.+++..+.+++ .+.+ .++. .++.+...... ..
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~----lga~-~~~~~~~~~~~~~~~~~~~~~ 212 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQIL-----NFRLIAVTRNNKHTEELLR----LGAA-YVIDTSTAPLYETVMELTNGI 212 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-----TCEEEEEESSSTTHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHh----CCCc-EEEeCCcccHHHHHHHHhCCC
Confidence 678999999987 455655555542 5699999999988887765 2433 2222 22222222222 24
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+|+|+.+-. ... .....+.|+++|+++++..
T Consensus 213 g~Dvvid~~g---------------------------~~~-~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 213 GADAAIDSIG---------------------------GPD-GNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp CEEEEEESSC---------------------------HHH-HHHHHHTEEEEEEEEECCC
T ss_pred CCcEEEECCC---------------------------Chh-HHHHHHHhcCCCEEEEEee
Confidence 7999987521 112 2334478999999998643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.036 Score=47.47 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=62.1
Q ss_pred CCCEEEEec-cc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc--chhhchhhhcCCCcc
Q 025207 42 HPVLCMEVG-CG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT--DIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlG-cG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~fD 117 (256)
++.+||=.| +| .|..++.+++.+ .+++|+++|.+++..+.+++ .|.+ .++.. ++.+.......+.+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~----~g~~Vi~~~~~~~~~~~~~~----lGad-~vi~~~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQR----TDLTVIATASRPETQEWVKS----LGAH-HVIDHSKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHH----CCSEEEEECSSHHHHHHHHH----TTCS-EEECTTSCHHHHHHTTCSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCCHHHHHHHhcCCCce
Confidence 678899887 43 466666666653 35699999999998887754 3433 22211 222222222235799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+|+-.-. -...+..+.++|+++|+++++
T Consensus 242 vvid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 242 FVFSTTH---------------------------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEECSC---------------------------HHHHHHHHHHHSCTTCEEEEC
T ss_pred EEEECCC---------------------------chhhHHHHHHHhcCCCEEEEE
Confidence 9987421 235678888999999999985
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.04 Score=47.17 Aligned_cols=96 Identities=14% Similarity=0.060 Sum_probs=59.9
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhc-CCC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~-~~~ 115 (256)
+++.+||=.|+|. |..++.+++. .+++|+++|.+++..+.+++ .|.+ .++.. |+.+...... ...
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~v~~~~~g~g 257 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKA-----TGAEVIVTSSSREKLDRAFA----LGAD-HGINRLEEDWVERVYALTGDRG 257 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHH-----TTCEEEEEESCHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHHTTCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCEEEEEecCchhHHHHHH----cCCC-EEEcCCcccHHHHHHHHhCCCC
Confidence 5789999999653 4444444443 25699999999998887654 3443 23322 2222222222 237
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+|+-... ...+..+.+.|+++|+++++..
T Consensus 258 ~D~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 258 ADHILEIAG----------------------------GAGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp EEEEEEETT----------------------------SSCHHHHHHHEEEEEEEEEECC
T ss_pred ceEEEECCC----------------------------hHHHHHHHHHhhcCCEEEEEec
Confidence 999987421 0125667789999999998653
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.54 Score=44.50 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=36.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHH
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~ 90 (256)
++..+|||+.||.|.++.-+.+.......+. .+.++|+++.+++.-+.|.
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 3457899999999998877766532111111 5789999999998877764
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.056 Score=45.76 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=59.8
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~ 114 (256)
+++++||-.|+ |.|...+.+++. .+++|+++|.+++..+.+++. .|.. .++.. ++.+.......+
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~-----~G~~V~~~~~~~~~~~~~~~~---~g~~-~~~d~~~~~~~~~~~~~~~~~ 224 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKM-----MGCYVVGSAGSKEKVDLLKTK---FGFD-DAFNYKEESDLTAALKRCFPN 224 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHHT---SCCS-EEEETTSCSCSHHHHHHHCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHHH---cCCc-eEEecCCHHHHHHHHHHHhCC
Confidence 57899999997 344554444443 256999999999887776532 2432 22211 222222222235
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++.+-. . ..+..+.+.|+++|+++++.
T Consensus 225 ~~d~vi~~~g---------------------------~-~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 225 GIDIYFENVG---------------------------G-KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp CEEEEEESSC---------------------------H-HHHHHHHTTEEEEEEEEECC
T ss_pred CCcEEEECCC---------------------------H-HHHHHHHHHHhcCCEEEEEc
Confidence 6999988522 1 35777888999999998753
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.061 Score=45.66 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=58.9
Q ss_pred CCCEEEEec-cc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE--cchhhchhhhcCCCcc
Q 025207 42 HPVLCMEVG-CG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN--TDIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlG-cG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~fD 117 (256)
++.+||=.| +| .|..++.+++. .+++|++++.+++..+.+++ .|.+ .++. .++.+.........+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~g~D 219 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKA-----YGLRVITTASRNETIEWTKK----MGAD-IVLNHKESLLNQFKTQGIELVD 219 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHH-----TTCEEEEECCSHHHHHHHHH----HTCS-EEECTTSCHHHHHHHHTCCCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHh----cCCc-EEEECCccHHHHHHHhCCCCcc
Confidence 688999884 32 34444444443 35699999999998888765 3432 1221 1222222233335799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+|+.+.. -...+..+.++|+++|+++.+
T Consensus 220 vv~d~~g---------------------------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 220 YVFCTFN---------------------------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEEESSC---------------------------HHHHHHHHHHHEEEEEEEEES
T ss_pred EEEECCC---------------------------chHHHHHHHHHhccCCEEEEE
Confidence 9987421 245577888899999999764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.022 Score=48.48 Aligned_cols=91 Identities=21% Similarity=0.141 Sum_probs=59.4
Q ss_pred cCCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025207 40 EHHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.+++.+||-.|+|. |..++.+++. .+++|+++|.+++..+.+++ .|.+ .++ .+... ....+|+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~v~-~~~~~-----~~~~~D~ 237 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVA-----MGAEVSVFARNEHKKQDALS----MGVK-HFY-TDPKQ-----CKEELDF 237 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHH-----TTCEEEEECSSSTTHHHHHH----TTCS-EEE-SSGGG-----CCSCEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH-----CCCeEEEEeCCHHHHHHHHh----cCCC-eec-CCHHH-----HhcCCCE
Confidence 36889999998753 5555555544 25699999999988887754 4443 233 33211 1237999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+-... + ...+..+.+.|+++|+++++.
T Consensus 238 vid~~g--------------------~-------~~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 238 IISTIP--------------------T-------HYDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp EEECCC--------------------S-------CCCHHHHHTTEEEEEEEEECC
T ss_pred EEECCC--------------------c-------HHHHHHHHHHHhcCCEEEEEC
Confidence 987422 0 113667788999999999864
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.046 Score=46.80 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=61.2
Q ss_pred CCCCEEEEec--ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCC
Q 025207 41 HHPVLCMEVG--CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlG--cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~ 115 (256)
+++.+||-.| .|.|..++.+++. .+++|++++.+++..+.+++ .|.+ .++.. ++.+.........
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~-----~Ga~Vi~~~~~~~~~~~~~~----~Ga~-~~~~~~~~~~~~~~~~~~~~g 231 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKK-----AKCHVIGTCSSDEKSAFLKS----LGCD-RPINYKTEPVGTVLKQEYPEG 231 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----TTCS-EEEETTTSCHHHHHHHHCTTC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHh-----CCCEEEEEECCHHHHHHHHH----cCCc-EEEecCChhHHHHHHHhcCCC
Confidence 5789999998 3456666666554 25689999999888877664 3433 22221 2222222222346
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+.+-. ...+..+.+.|+++|+++++.
T Consensus 232 ~D~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 232 VDVVYESVG----------------------------GAMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp EEEEEECSC----------------------------THHHHHHHHHEEEEEEEEECC
T ss_pred CCEEEECCC----------------------------HHHHHHHHHHHhcCCEEEEEe
Confidence 999987522 134667788999999998854
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.34 Score=41.03 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=67.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC----------------------Ccce
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN----------------------VHAD 98 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~----------------------~~~~ 98 (256)
.+...|+.+|||.......+... +++..++-+|. |+.++.-++.+...+ -...
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~----~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 170 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQM----FPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYK 170 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHH----CTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCc----CCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceE
Confidence 35689999999999965444433 45778888887 888887777766541 1227
Q ss_pred EEEcchhhch------hhh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 99 LINTDIASGL------EKR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 99 ~~~~d~~~~~------~~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
++..|+.+.. ... ......++++-......+. .....+++.+.... |+|.+++
T Consensus 171 ~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~-------------------~~~~~ll~~ia~~~-~~~~~v~ 230 (334)
T 1rjd_A 171 LAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHN-------------------NESQLLINTIMSKF-SHGLWIS 230 (334)
T ss_dssp EEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH-------------------HHHHHHHHHHHHHC-SSEEEEE
T ss_pred EEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCH-------------------HHHHHHHHHHHhhC-CCcEEEE
Confidence 7888887631 111 1244667777433222221 23567788777766 7777654
Q ss_pred EE
Q 025207 172 VT 173 (256)
Q Consensus 172 ~~ 173 (256)
..
T Consensus 231 ~e 232 (334)
T 1rjd_A 231 YD 232 (334)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.058 Score=46.73 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---c-hhhchhhhcC-
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT---D-IASGLEKRLA- 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d-~~~~~~~~~~- 113 (256)
+++.+||-.|+|. |.+++.+++.+ ++ .|+++|.+++.++.+++ .|.+ ++.. + +.+.......
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~--~i~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLL-----GAAVVIVGDLNPARLAHAKA----QGFE--IADLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEEESCHHHHHHHHH----TTCE--EEETTSSSCHHHHHHHHHSS
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-----CCCeEEEEcCCHHHHHHHHH----cCCc--EEccCCcchHHHHHHHHhCC
Confidence 5789999999754 56666666552 44 79999999998888754 3442 2221 1 2222222212
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+|+|+-.-.-.......... +... ....+..+.++|+++|+++++.
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~------~~~~------~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 253 PEVDCAVDAVGFEARGHGHEGA------KHEA------PATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp SCEEEEEECCCTTCBCSSTTGG------GSBC------TTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCEEEECCCCcccccccccc------cccc------hHHHHHHHHHHHhcCCEEEEec
Confidence 3699998743210000000000 0000 1235777888999999998754
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0036 Score=66.35 Aligned_cols=107 Identities=26% Similarity=0.305 Sum_probs=52.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCC--CceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVP--GVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~--~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+..+|||+|.|+|..+..+...+.. .+ ...++-+|+++...+.+++.+....+ ..-..|..+. ..+...+||+|
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~-~~~~~~~yt~td~s~~~~~~a~~~f~~~di--~~~~~d~~~~-~~~~~~~ydlv 1315 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNT-QPVMDLDYTATDRNPQALEAAQAKLEQLHV--TQGQWDPANP-APGSLGKADLL 1315 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTT-SSSCEEEEEEECSSSSSTTTTTTTHHHHTE--EEECCCSSCC-CC-----CCEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcc-cCcccceEEEecCChHHHHHHHHHhhhccc--cccccccccc-ccCCCCceeEE
Confidence 5679999999999876666665542 12 24688899999888777777653211 1111122111 01123579999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+.-..+... .....+.+++++|||||.+++..
T Consensus 1316 ia~~vl~~t~---------------------~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1316 VCNCALATLG---------------------DPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EEECC-----------------------------------------CCEEEEEE
T ss_pred EEcccccccc---------------------cHHHHHHHHHHhcCCCcEEEEEe
Confidence 9853332111 14566888999999999998865
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.041 Score=46.76 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=59.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCCc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~f 116 (256)
++.+||-+|+| .++..+++.+.. .++ +|+++|.+++..+.+++ .|.+ .++. .++.+...... ...+
T Consensus 167 ~g~~VlV~GaG--~vG~~~~q~a~~--~Ga~~Vi~~~~~~~~~~~~~~----~Ga~-~~~~~~~~~~~~~v~~~~~g~g~ 237 (348)
T 2d8a_A 167 SGKSVLITGAG--PLGLLGIAVAKA--SGAYPVIVSEPSDFRRELAKK----VGAD-YVINPFEEDVVKEVMDITDGNGV 237 (348)
T ss_dssp TTCCEEEECCS--HHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHH----HTCS-EEECTTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCC--HHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hCCC-EEECCCCcCHHHHHHHHcCCCCC
Confidence 77899999984 444444443332 255 89999999988887764 2432 2222 12222222221 2369
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+..-. ....+..+.+.|+++|+++.+.
T Consensus 238 D~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 238 DVFLEFSG---------------------------APKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp EEEEECSC---------------------------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 99987532 1345677888999999998854
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.08 Score=45.81 Aligned_cols=77 Identities=16% Similarity=0.089 Sum_probs=47.1
Q ss_pred CCccccCCchHHHHHHHHHhh----cccccCCCCEEEEecccccHHHHHHHHHhccc---CCCceEEEEeCCHHHHHHHH
Q 025207 15 PEVYEPCDDSFALVDALLADR----INLVEHHPVLCMEVGCGSGYVITSLALMLGQE---VPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~----~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~---~~~~~v~giD~~~~~i~~a~ 87 (256)
.+++++-..+.++.+.+..++ .......+-.|+|+|.|+|.+...+...+... +...+++.||+|+...+.-+
T Consensus 49 GDF~Tapeis~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~ 128 (387)
T 1zkd_A 49 GDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ 128 (387)
T ss_dssp --CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred CCeeCCCchHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHH
Confidence 345555333445555443333 22222344689999999999988777765421 12458999999999887655
Q ss_pred HHHH
Q 025207 88 KTLE 91 (256)
Q Consensus 88 ~~~~ 91 (256)
+.+.
T Consensus 129 ~~L~ 132 (387)
T 1zkd_A 129 TLLA 132 (387)
T ss_dssp HHST
T ss_pred HHhc
Confidence 5443
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.76 Score=45.93 Aligned_cols=155 Identities=13% Similarity=0.073 Sum_probs=86.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc--eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh----------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV--QYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE---------- 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~--~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~---------- 109 (256)
...+++|+.||.|.+.+.+.+. |. .+.++|+++.+++.-+.|.. ...++.+|+.+...
T Consensus 850 ~~l~viDLFsG~GGlslGfe~A------G~~~vv~avEid~~A~~ty~~N~p----~~~~~~~DI~~l~~~~~~gdi~~~ 919 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQA------GISETLWAIEMWDPAAQAFRLNNP----GTTVFTEDCNVLLKLVMAGEVTNS 919 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHT------TSEEEEEEECCSHHHHHHHHHHCT----TSEEECSCHHHHHHHHTTTCSBCS
T ss_pred CCceEEecccCccHHHHHHHHC------CCCceEEEEECCHHHHHHHHHhCC----CCcEeeccHHHHhHhhhccchhhh
Confidence 4578999999999988776654 32 58899999999988777642 22466666553321
Q ss_pred ---hh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------CH
Q 025207 110 ---KR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------DP 179 (256)
Q Consensus 110 ---~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~ 179 (256)
.. ..+.+|+|+..||-...+......... .. +.+ ...+..+++ +.+.++|.-+++=..++.. ..
T Consensus 920 ~~~~lp~~~~vDvl~GGpPCQ~FS~agr~~~~~---~~-d~R-~~L~~~~lr-iv~~~rPk~fv~ENV~glls~~~g~~~ 993 (1330)
T 3av4_A 920 LGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRT---YS-KFK-NSLVVSFLS-YCDYYRPRFFLLENVRNFVSYRRSMVL 993 (1330)
T ss_dssp SCCBCCCTTTCSEEEECCCCTTTCSSSCCCHHH---HH-HHH-HSHHHHHHH-HHHHHCCSEEEEEEEGGGGTTTTTHHH
T ss_pred hhhhccccCccceEEecCCCccccccccccccc---cc-chh-hHHHHHHHH-HHHHhcCcEEEEeccHHHhccCccHHH
Confidence 01 124689999999987766432110000 00 000 001223333 3345688633332222211 13
Q ss_pred HHHHHHHHHcCCcEEEEEe------cCCCCccEEEEEEE
Q 025207 180 SQICLQMMEKGYAARIVVQ------RSTEEENLHIIKFW 212 (256)
Q Consensus 180 ~~~~~~~~~~g~~~~~~~~------~~~~~~~~~l~~~~ 212 (256)
..+...|.+.||.+..... ..+...+++++-..
T Consensus 994 ~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r 1032 (1330)
T 3av4_A 994 KLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAA 1032 (1330)
T ss_dssp HHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEEEEC
T ss_pred HHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEEEec
Confidence 4567777888987654321 22345666666543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.073 Score=45.83 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=59.7
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc------chhhchhhhc
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLINT------DIASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~------d~~~~~~~~~ 112 (256)
+++.+||-.|+| .|..++.+++. -+ ++|+++|.+++..+.+++ .|.+ .++.. |+.+......
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~-----~Ga~~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~v~~~~ 263 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARS-----LGAENVIVIAGSPNRLKLAEE----IGAD-LTLNRRETSVEERRKAIMDIT 263 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHH-----TTBSEEEEEESCHHHHHHHHH----TTCS-EEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----cCCceEEEEcCCHHHHHHHHH----cCCc-EEEeccccCcchHHHHHHHHh
Confidence 578999999954 24444444443 24 489999999998887763 3443 33332 2222222222
Q ss_pred C-CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 A-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
. ..+|+|+-+-.. ...+..+.+.|+++|+++++.
T Consensus 264 ~g~g~Dvvid~~g~---------------------------~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 264 HGRGADFILEATGD---------------------------SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp TTSCEEEEEECSSC---------------------------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCcEEEECCCC---------------------------HHHHHHHHHHHhcCCEEEEEe
Confidence 2 369999874220 134667788999999998854
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.032 Score=47.32 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=59.9
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE--cchhhchhhhcC-CC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN--TDIASGLEKRLA-GL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~~-~~ 115 (256)
+++.+||=.|+ |.|..++.+++. .+++|++++.+++..+.+++ .+.. .++. .++.+....... ..
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----~ga~-~v~~~~~~~~~~v~~~~~~~g 227 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKG-----MGAKVIAVVNRTAATEFVKS----VGAD-IVLPLEEGWAKAVREATGGAG 227 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESSGGGHHHHHH----HTCS-EEEESSTTHHHHHHHHTTTSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHh----cCCc-EEecCchhHHHHHHHHhCCCC
Confidence 57899999987 345565555554 25699999999988877765 2433 2222 223222222222 36
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+.+-. ...+..+.+.|+++|+++++.
T Consensus 228 ~Dvvid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 228 VDMVVDPIG----------------------------GPAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEEEEESCC------------------------------CHHHHHHTEEEEEEEEEC-
T ss_pred ceEEEECCc----------------------------hhHHHHHHHhhcCCCEEEEEE
Confidence 999987522 013566778999999999854
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.19 Score=40.56 Aligned_cols=127 Identities=13% Similarity=0.032 Sum_probs=73.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.| |+|.++..+++.|.++ .+++|++++.++...+.+.+.+...+....++..|+.+... ... -
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~-~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRL-FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHH-SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHh-cCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 457788666 6677888888887651 25689999999887777666666555445788888765421 111 1
Q ss_pred CCccEEEECCCCCCCCCcccc-cccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVG-REGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.+|+||.|.-.......... .......+... ......+++.+.+.++++|+++++.
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N---~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTN---FFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHH---THHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhhee---eeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 479999987644322111000 00001001000 0012345666777777788888765
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.19 Score=42.38 Aligned_cols=99 Identities=18% Similarity=0.096 Sum_probs=61.3
Q ss_pred cCCCCEEEEecccccH-HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-CCC
Q 025207 40 EHHPVLCMEVGCGSGY-VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-AGL 115 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~-~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-~~~ 115 (256)
.+++.+||=+|+|.+. .++.+++. ..+++|+++|.+++..+.+++ .+... +....|..+...... ...
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~----~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~g~g 232 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKN----VFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITGGLG 232 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHH----TSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTTSSC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHH----hCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcCCCC
Confidence 3688999999987643 33333333 336799999999988776654 34332 222334433333322 235
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|.++.+.. -...+....+.|+++|+++++.
T Consensus 233 ~d~~~~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 233 VQSAIVCAV---------------------------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEEEECCS---------------------------CHHHHHHHHHTEEEEEEEEECC
T ss_pred ceEEEEecc---------------------------CcchhheeheeecCCceEEEEe
Confidence 777766422 2455777888999999998854
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.067 Score=45.32 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=59.7
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhc-CC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~-~~ 114 (256)
+++.+||-.|+ |.|...+.+++. .+++|+++|.+++..+.+++ .+.. .++.. ++.+...... ..
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~-----~G~~Vi~~~~~~~~~~~~~~----~ga~-~~~d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKL-----FGARVIATAGSEDKLRRAKA----LGAD-ETVNYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----HTCS-EEEETTSTTHHHHHHHHTTTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHh----cCCC-EEEcCCcccHHHHHHHHhCCC
Confidence 57899999998 456665555554 25699999999998887754 2432 22221 2222222221 24
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+.+-. ...+..+.+.|+++|+++++.
T Consensus 235 ~~d~vi~~~g----------------------------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 235 GADKVVDHTG----------------------------ALYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp CEEEEEESSC----------------------------SSSHHHHHHHEEEEEEEEESS
T ss_pred CceEEEECCC----------------------------HHHHHHHHHhhccCCEEEEEe
Confidence 7999988532 012566778899999998754
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.058 Score=45.95 Aligned_cols=95 Identities=20% Similarity=0.151 Sum_probs=58.8
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 115 (256)
+++++||-.|. |.|...+.+++. .+++|+++|.+++..+.+++ .|.. .++. .++.+.........
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~~~~~~~~~~~~~~~~~~~~g 235 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARA-----FGAEVYATAGSTGKCEACER----LGAK-RGINYRSEDFAAVIKAETGQG 235 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHHSSC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHh----cCCC-EEEeCCchHHHHHHHHHhCCC
Confidence 57889998853 345555444443 25689999999998887765 2432 2222 12222222222357
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 236 ~Dvvid~~g----------------------------~~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 236 VDIILDMIG----------------------------AAYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEEEEESCC----------------------------GGGHHHHHHTEEEEEEEEECC
T ss_pred ceEEEECCC----------------------------HHHHHHHHHHhccCCEEEEEE
Confidence 999987532 023566778999999998854
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.17 Score=43.86 Aligned_cols=72 Identities=8% Similarity=0.132 Sum_probs=43.6
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcC-C
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLA-G 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~-~ 114 (256)
+++.+||=.|+|. |..++.+++. .++ +|+++|.+++..+.+++. |.+ .++. .|+.+....... .
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~-----~Ga~~Vi~~~~~~~~~~~~~~l----Ga~-~vi~~~~~~~~~~i~~~t~g~ 281 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKH-----AGASKVILSEPSEVRRNLAKEL----GAD-HVIDPTKENFVEAVLDYTNGL 281 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSCHHHHHHHHHH----TCS-EEECTTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEECCCHHHHHHHHHc----CCC-EEEcCCCCCHHHHHHHHhCCC
Confidence 5788999998742 4444444443 245 899999999988887653 432 2222 233333323222 3
Q ss_pred CccEEEEC
Q 025207 115 LVDVMVVN 122 (256)
Q Consensus 115 ~fD~Ii~n 122 (256)
.+|+|+-.
T Consensus 282 g~D~vid~ 289 (404)
T 3ip1_A 282 GAKLFLEA 289 (404)
T ss_dssp CCSEEEEC
T ss_pred CCCEEEEC
Confidence 69999874
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.11 Score=43.39 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=57.8
Q ss_pred EEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEEC
Q 025207 45 LCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122 (256)
Q Consensus 45 ~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~n 122 (256)
+||=.|+ |.|..++.+++.+ +++|++++.+++..+.+++ .|.+ .++..+-.+.......+.+|+++-.
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-----Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~d~v~d~ 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-----GYQVAAVSGRESTHGYLKS----LGAN-RILSRDEFAESRPLEKQLWAGAIDT 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCGGGHHHHHH----HTCS-EEEEGGGSSCCCSSCCCCEEEEEES
T ss_pred eEEEECCCcHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHh----cCCC-EEEecCCHHHHHhhcCCCccEEEEC
Confidence 3888886 4566666666652 5689999999998887765 3433 2222111111222223579988763
Q ss_pred CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 123 PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 123 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-. ...+..+.+.|+++|+++.+.
T Consensus 219 ~g----------------------------~~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 219 VG----------------------------DKVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp SC----------------------------HHHHHHHHHTEEEEEEEEECC
T ss_pred CC----------------------------cHHHHHHHHHHhcCCEEEEEe
Confidence 11 126778888999999999854
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.087 Score=44.86 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=57.5
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhh-cCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~-~~~ 114 (256)
+++++||-.|+ |.|...+.+++. .+++|++++.+++..+.+++ .+.. .++.. +..+..... ...
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----~ga~-~~~d~~~~~~~~~~~~~~~~~ 238 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARA-----YGLKILGTAGTEEGQKIVLQ----NGAH-EVFNHREVNYIDKIKKYVGEK 238 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----TTCS-EEEETTSTTHHHHHHHHHCTT
T ss_pred CCcCEEEEECCCChHHHHHHHHHHH-----CCCEEEEEeCChhHHHHHHH----cCCC-EEEeCCCchHHHHHHHHcCCC
Confidence 57899999996 334444333333 25699999999988776543 3432 22221 222222121 123
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++.+.. ...+..+.+.|+++|+++++.
T Consensus 239 ~~D~vi~~~G----------------------------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 239 GIDIIIEMLA----------------------------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp CEEEEEESCH----------------------------HHHHHHHHHHEEEEEEEEECC
T ss_pred CcEEEEECCC----------------------------hHHHHHHHHhccCCCEEEEEe
Confidence 6999988521 124567788999999998854
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.097 Score=44.61 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=58.0
Q ss_pred CEEEEecccccHHHHHH-HHHh-cccCCCce-EEEEeCCHH---HHHHHHHHHHHcCCcceE--EEcchhhchhhhcCCC
Q 025207 44 VLCMEVGCGSGYVITSL-ALML-GQEVPGVQ-YIATDINPY---AVEVTRKTLEAHNVHADL--INTDIASGLEKRLAGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l-a~~l-~~~~~~~~-v~giD~~~~---~i~~a~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~ 115 (256)
.+||=.|+ |.++..+ .+.+ .. .+++ |+++|.+++ ..+.+++ .|.+ .+ ...|+.+ .... .+.
T Consensus 174 ~~VlV~Ga--G~vG~~a~iqla~k~--~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~~-i~~~-~gg 242 (357)
T 2b5w_A 174 SSAFVLGN--GSLGLLTLAMLKVDD--KGYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVED-VPDV-YEQ 242 (357)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHCT--TCCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGGG-HHHH-SCC
T ss_pred CEEEEECC--CHHHHHHHHHHHHHH--cCCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHHH-HHHh-CCC
Confidence 89999997 5555555 5544 32 2556 999999887 7777653 3432 12 0112222 2233 347
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+|+-.-. ....+..+.+.|+++|+++++..
T Consensus 243 ~Dvvid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 243 MDFIYEATG---------------------------FPKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EEEEEECSC---------------------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred CCEEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEEeC
Confidence 999987421 12457778889999999988643
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.061 Score=45.20 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=60.3
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~ 114 (256)
+++++||-.|+ |.|..++.+++.. +++|++++.+++..+.+++ .|.. .++. .++.+...... ..
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~----~Ga~-~~~~~~~~~~~~~~~~~~~~~ 208 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKAL-----GAKLIGTVSSPEKAAHAKA----LGAW-ETIDYSHEDVAKRVLELTDGK 208 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCccHHHHHHHHhCCC
Confidence 57899998883 3455555555542 5689999999998887764 2432 2222 22222222222 24
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+|+|+.+-. ...+..+.+.|+++|+++++..
T Consensus 209 g~Dvvid~~g----------------------------~~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 209 KCPVVYDGVG----------------------------QDTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp CEEEEEESSC----------------------------GGGHHHHHTTEEEEEEEEECCC
T ss_pred CceEEEECCC----------------------------hHHHHHHHHHhcCCCEEEEEec
Confidence 6999987522 1236677889999999998643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.076 Score=44.77 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=59.2
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~ 114 (256)
+++++||-.|+ |.|..++.+++. .+++|++++.+++..+.+++ .|.. .++. .++.+...... ..
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----~ga~-~~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKM-----KGAHTIAVASTDEKLKIAKE----YGAE-YLINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----TTCS-EEEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH----cCCc-EEEeCCCchHHHHHHHHhCCC
Confidence 57899999984 344444444443 25699999999988877654 3432 2222 22222222221 34
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+.+-. ...+..+.+.|+++|+++++.
T Consensus 217 g~D~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 217 GVDASFDSVG----------------------------KDTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp CEEEEEECCG----------------------------GGGHHHHHHHEEEEEEEEECC
T ss_pred CceEEEECCC----------------------------hHHHHHHHHHhccCCEEEEEc
Confidence 6999987521 123666778999999999854
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.11 Score=44.20 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=58.8
Q ss_pred CCC--CEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCC
Q 025207 41 HHP--VLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~--~~VLDlGcG~G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~ 114 (256)
+++ ++||-.|++ |.++..+++.+.. .++ +|+++|.+++..+.+++. .+.. .++.. ++.+.......+
T Consensus 157 ~~g~~~~vlI~Gas-ggiG~~~~~~a~~--~Ga~~Vi~~~~~~~~~~~~~~~---~g~~-~~~d~~~~~~~~~~~~~~~~ 229 (357)
T 2zb4_A 157 TAGSNKTMVVSGAA-GACGSVAGQIGHF--LGCSRVVGICGTHEKCILLTSE---LGFD-AAINYKKDNVAEQLRESCPA 229 (357)
T ss_dssp CTTSCCEEEESSTT-BHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHHT---SCCS-EEEETTTSCHHHHHHHHCTT
T ss_pred CCCCccEEEEECCC-cHHHHHHHHHHHH--CCCCeEEEEeCCHHHHHHHHHH---cCCc-eEEecCchHHHHHHHHhcCC
Confidence 467 899999873 3333334444332 256 899999998877766542 2432 22211 222222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 230 ~~d~vi~~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 230 GVDVYFDNVG----------------------------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp CEEEEEESCC----------------------------HHHHHHHHHTEEEEEEEEECC
T ss_pred CCCEEEECCC----------------------------HHHHHHHHHHhccCcEEEEEC
Confidence 7999988521 145677888999999998754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.054 Score=46.27 Aligned_cols=97 Identities=19% Similarity=0.094 Sum_probs=57.9
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh-hchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA-SGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~fD~ 118 (256)
+++.+||-+|+|. |..++.+++.+ +++|+++|.+++..+.+++ .|.+ .++..+-. +..... .+.+|+
T Consensus 178 ~~g~~VlV~GaG~vG~~~~qlak~~-----Ga~Vi~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~~~~~~-~~~~D~ 246 (360)
T 1piw_A 178 GPGKKVGIVGLGGIGSMGTLISKAM-----GAETYVISRSSRKREDAMK----MGAD-HYIATLEEGDWGEKY-FDTFDL 246 (360)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEESSSTTHHHHHH----HTCS-EEEEGGGTSCHHHHS-CSCEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEcCCHHHHHHHHH----cCCC-EEEcCcCchHHHHHh-hcCCCE
Confidence 5789999999842 44544444442 4689999999888887765 3433 23322111 111111 257999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+..-.... ...+..+.+.|+++|+++.+.
T Consensus 247 vid~~g~~~-------------------------~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 247 IVVCASSLT-------------------------DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp EEECCSCST-------------------------TCCTTTGGGGEEEEEEEEECC
T ss_pred EEECCCCCc-------------------------HHHHHHHHHHhcCCCEEEEec
Confidence 987532100 012445677899999988743
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.24 Score=36.93 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
+...+|+..... .-..-|||+|-|+|.-= ..|.+..|+..|+++|-.-.+-.. .......++.+|+
T Consensus 27 R~~L~~a~~~v~----~~~GpVlElGLGNGRTy----dHLRe~~P~R~I~vfDR~~~~hp~------~~P~~e~~ilGdi 92 (174)
T 3iht_A 27 RACLEHAIAQTA----GLSGPVYELGLGNGRTY----HHLRQHVQGREIYVFERAVASHPD------STPPEAQLILGDI 92 (174)
T ss_dssp HHHHHHHHHHTT----TCCSCEEEECCTTCHHH----HHHHHHCCSSCEEEEESSCCCCGG------GCCCGGGEEESCH
T ss_pred HHHHHHHHHHhc----CCCCceEEecCCCChhH----HHHHHhCCCCcEEEEEeeeccCCC------CCCchHheecccH
Confidence 334455555553 45688999999999953 344444888899999943221110 1112238999999
Q ss_pred hhchhh---hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 105 ASGLEK---RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 105 ~~~~~~---~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.+.++. .+....-++-++.-... ++. .......+-..+..+|.|||+++-
T Consensus 93 ~~tL~~~~~r~g~~a~LaHaD~G~g~--------~~~---------d~a~a~~lsplI~~~la~GGi~vS 145 (174)
T 3iht_A 93 RETLPATLERFGATASLVHADLGGHN--------REK---------NDRFARLISPLIEPHLAQGGLMVS 145 (174)
T ss_dssp HHHHHHHHHHHCSCEEEEEECCCCSC--------HHH---------HHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEeecCCCC--------cch---------hHHHHHhhhHHHHHHhcCCcEEEe
Confidence 888765 23344444444322110 000 111233344557789999999885
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.085 Score=44.28 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=57.4
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhh-cCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~-~~~ 114 (256)
+++++||-.|+ |.|...+.+++. . +++|+++|.+++..+.+++ .+.. .++. .+..+..... ...
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~---~--G~~V~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~ 208 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKA---L--GAKLIGTVGTAQKAQSALK----AGAW-QVINYREEDLVERLKEITGGK 208 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHH---H--TCEEEEEESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHH----cCCC-EEEECCCccHHHHHHHHhCCC
Confidence 57899999984 344444333333 2 5689999999988877765 2332 1221 1222222111 124
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 209 ~~D~vi~~~g----------------------------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 209 KVRVVYDSVG----------------------------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp CEEEEEECSC----------------------------GGGHHHHHHTEEEEEEEEECC
T ss_pred CceEEEECCc----------------------------hHHHHHHHHHhcCCCEEEEEe
Confidence 6999988522 123667788999999998854
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.99 Score=36.80 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-CHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-NPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~-~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.++. +++..+...+.+...+....++..|+.+... ...
T Consensus 28 ~~k~~lVTGas-~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 28 ARPVAIVTGGR-RGIGLGIARALAAS--GFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAE 104 (280)
T ss_dssp CCCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHC--CCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 56788878855 55677777777654 678999995 7777776666666666556788888876531 111
Q ss_pred CCCccEEEECCCC
Q 025207 113 AGLVDVMVVNPPY 125 (256)
Q Consensus 113 ~~~fD~Ii~npP~ 125 (256)
-+++|++|.|.-.
T Consensus 105 ~g~iD~lvnnAg~ 117 (280)
T 4da9_A 105 FGRIDCLVNNAGI 117 (280)
T ss_dssp HSCCCEEEEECC-
T ss_pred cCCCCEEEECCCc
Confidence 1479999998754
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.031 Score=47.43 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=57.9
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCCc
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~f 116 (256)
++.+||-.|+|. |..++.+++. .++ +|+++|.+++..+.+++. . . .++. .++.+.........+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~-----~Ga~~Vi~~~~~~~~~~~~~~l-a----~-~v~~~~~~~~~~~~~~~~~~g~ 232 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRA-----SGAGPILVSDPNPYRLAFARPY-A----D-RLVNPLEEDLLEVVRRVTGSGV 232 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHH-----TTCCSEEEECSCHHHHGGGTTT-C----S-EEECTTTSCHHHHHHHHHSSCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEECCCHHHHHHHHHh-H----H-hccCcCccCHHHHHHHhcCCCC
Confidence 788999999842 4444444443 255 899999999887776542 1 1 2222 122222222113469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+..-. ....++.+.+.|+++|+++++.
T Consensus 233 D~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 233 EVLLEFSG---------------------------NEAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp EEEEECSC---------------------------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 99987422 1245677888999999988754
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.78 Score=37.29 Aligned_cols=125 Identities=19% Similarity=0.167 Sum_probs=73.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC------------HHHHHHHHHHHHHcCCcceEEEcchhhchh
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN------------PYAVEVTRKTLEAHNVHADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~------------~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~ 109 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+|.+ ...++.+...+...+....++..|+.+...
T Consensus 9 ~gk~vlVTGas-~gIG~~ia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 9 QDKVVLVTGGA-RGQGRSHAVKLAEE--GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAA 85 (287)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHC--CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHH
Confidence 56788888865 45677777777654 6789999987 666666666666555555788888765421
Q ss_pred --hhc------CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 110 --KRL------AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 110 --~~~------~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
... -+++|++|.|.-+..... +.........+... ..-...+++.+.+.++.+|.++.+.
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~-~~~~~~~~~~~~~N---~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGA-HLPVQAFADAFDVD---FVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCT-TCCTHHHHHHHHHH---THHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccC-cCCHHHHHHHhhhh---hhhhHHHHHHHHHHhhcCcEEEEec
Confidence 111 147999999876543221 11000001111000 0012344566777788889888754
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.46 Score=34.25 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii 120 (256)
.++|+=+|+ |.++..+++.|.+. +..|+++|.+++.++.+++. + ..++.+|..+.. ....-..+|+|+
T Consensus 6 ~~~v~I~G~--G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~~----~--~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 6 RYEYIVIGS--EAAGVGLVRELTAA--GKKVLAVDKSKEKIELLEDE----G--FDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHT----T--CEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC----C--CcEEECCCCCHHHHHhCCcccCCEEE
Confidence 457888887 56888888887654 56899999999987766542 2 267788876542 121235789998
Q ss_pred ECCC
Q 025207 121 VNPP 124 (256)
Q Consensus 121 ~npP 124 (256)
...|
T Consensus 76 ~~~~ 79 (141)
T 3llv_A 76 ITGS 79 (141)
T ss_dssp ECCS
T ss_pred EecC
Confidence 8654
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.17 Score=43.00 Aligned_cols=97 Identities=12% Similarity=-0.022 Sum_probs=56.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhc-CCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~-~~~f 116 (256)
+++++||-.|++ |.++..+++.+.. .+++|+++|.+++..+.+++ .+.. .++.. +..+...... ...+
T Consensus 161 ~~g~~vlV~Ga~-ggiG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 161 QAGDYVLIHAGL-SGVGTAAIQLTRM--AGAIPLVTAGSQKKLQMAEK----LGAA-AGFNYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp CTTCEEEESSTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCc-cHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cCCc-EEEecCChHHHHHHHHHhcCCCc
Confidence 578899998842 2333334443332 25699999999988887743 2332 12221 2222222211 2469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 233 d~vi~~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 233 NLILDCIG----------------------------GSYWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp EEEEESSC----------------------------GGGHHHHHHHEEEEEEEEECC
T ss_pred eEEEECCC----------------------------chHHHHHHHhccCCCEEEEEe
Confidence 99988532 012556678899999998854
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.16 Score=42.70 Aligned_cols=95 Identities=22% Similarity=0.138 Sum_probs=58.5
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhh-cCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~-~~~ 114 (256)
+++++||-.|+ |.|.....+++. .+++|+++|.+++..+.+++ .+.. .++.. +..+..... ...
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~-----~G~~Vi~~~~~~~~~~~~~~----~g~~-~~~d~~~~~~~~~i~~~~~~~ 213 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARH-----LGATVIGTVSTEEKAETARK----LGCH-HTINYSTQDFAEVVREITGGK 213 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHHTTC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH----cCCC-EEEECCCHHHHHHHHHHhCCC
Confidence 57899999985 455555444443 25699999999988777754 2332 12211 222222111 124
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++.+-.- ..+..+.+.|+++|+++.+.
T Consensus 214 ~~d~vi~~~g~----------------------------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 214 GVDVVYDSIGK----------------------------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp CEEEEEECSCT----------------------------TTHHHHHHTEEEEEEEEECC
T ss_pred CCeEEEECCcH----------------------------HHHHHHHHhhccCCEEEEEe
Confidence 69999875320 23667778999999998754
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.69 Score=37.54 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=56.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC------------HHHHHHHHHHHHHcCCcceEEEcchhhchh
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN------------PYAVEVTRKTLEAHNVHADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~------------~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~ 109 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+++|.+ ++.++...+.+...+....++..|+.+...
T Consensus 12 ~gk~vlVTGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 12 TGKVAFITGA-ARGQGRAHAVRLAAD--GADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES 88 (278)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHT--TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHC--CCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 5678888885 456677777777654 6789999987 666666666666556556788888765421
Q ss_pred --hhc------CCCccEEEECCCCC
Q 025207 110 --KRL------AGLVDVMVVNPPYV 126 (256)
Q Consensus 110 --~~~------~~~fD~Ii~npP~~ 126 (256)
... -+++|++|.|.-..
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 111 15799999987554
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.40 E-value=0.2 Score=41.49 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=57.2
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch-hhchhhhcCCCcc
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI-ASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~fD 117 (256)
+++.+||-.|+ |.|...+.+++. .+++|+++|.+++..+.+++ .|.. .++..+- .+..... ..+|
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----~ga~-~~~~~~~~~~~~~~~--~~~d 191 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARA-----MGLRVLAAASRPEKLALPLA----LGAE-EAATYAEVPERAKAW--GGLD 191 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHH-----TTCEEEEEESSGGGSHHHHH----TTCS-EEEEGGGHHHHHHHT--TSEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHh----cCCC-EEEECCcchhHHHHh--cCce
Confidence 57899999997 345555555554 25699999999888777643 3433 2222211 1111111 5799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+. -.- ..+..+.+.|+++|+++.+.
T Consensus 192 ~vid-~g~----------------------------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 192 LVLE-VRG----------------------------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp EEEE-CSC----------------------------TTHHHHHTTEEEEEEEEEC-
T ss_pred EEEE-CCH----------------------------HHHHHHHHhhccCCEEEEEe
Confidence 9876 321 12566788999999988754
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.7 Score=37.12 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=57.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.+|.+++..+...+.+...+....++..|+.+... ... -
T Consensus 11 ~~k~vlVTGas-~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 11 NDAVAIVTGAA-AGIGRAIAGTFAKA--GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TTCEEEECSCS-SHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56788877765 45566777776654 6789999999988887777776666555778888766421 111 1
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|.-..
T Consensus 88 g~id~lv~nAg~~ 100 (256)
T 3gaf_A 88 GKITVLVNNAGGG 100 (256)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 5799999987544
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.84 Score=36.66 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=72.9
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------ 111 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------ 111 (256)
.++++||=.|++ +|.++..+++.+.++ +++|+.++.++...+.+++.....+ ...++..|+.+... ..
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKRE--GAELAFTYVGDRFKDRITEFAAEFG-SELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHc--CCCEEEEecchhhHHHHHHHHHHcC-CcEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999974 467778888887754 5789999988655555554444433 24677888765421 11
Q ss_pred cCCCccEEEECCCCCCCC----C-cc-cccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 112 LAGLVDVMVVNPPYVPTP----E-DE-VGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~----~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.-+++|++|.|.-+.... . .+ .........+...-. -...+.+.+.+.++++|+++++..
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~---~~~~l~~~~~~~~~~~g~iv~isS 154 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAY---SFPALAKAALPMLSDDASLLTLSY 154 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTT---HHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHH---HHHHHHHHHHHHhccCceEEEEec
Confidence 125799999987554321 0 00 000000000000000 123445667777888888887653
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.87 Score=36.15 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=56.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.| |+|.++..+++.+.++ +++|++++.++...+...+.+...+....++.+|+.+... ... -
T Consensus 10 ~~~~vlVtG-asggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 86 (255)
T 1fmc_A 10 DGKCAIITG-AGAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 467788777 5677788888887754 5789999999887766666665544445677788765421 111 1
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-..
T Consensus 87 ~~~d~vi~~Ag~~ 99 (255)
T 1fmc_A 87 GKVDILVNNAGGG 99 (255)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4799999876543
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.31 Score=41.69 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=59.6
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG--~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 115 (256)
+++.+||=.|++ .|..++.+++.. +++|+++. +++..+.+++ .|.+ .++. .|+.+.......+.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-----Ga~Vi~~~-~~~~~~~~~~----lGa~-~vi~~~~~~~~~~v~~~t~g~ 231 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-----GYIPIATC-SPHNFDLAKS----RGAE-EVFDYRAPNLAQTIRTYTKNN 231 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-----TCEEEEEE-CGGGHHHHHH----TTCS-EEEETTSTTHHHHHHHHTTTC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-----CCEEEEEe-CHHHHHHHHH----cCCc-EEEECCCchHHHHHHHHccCC
Confidence 578899999873 677776666652 56888885 7776666543 4543 2332 23333333333456
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc-ccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL-SKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~ 173 (256)
+|+++-.-. -...+..+.+.| +++|+++.+.
T Consensus 232 ~d~v~d~~g---------------------------~~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 232 LRYALDCIT---------------------------NVESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp CCEEEESSC---------------------------SHHHHHHHHHHSCTTCEEEEESS
T ss_pred ccEEEECCC---------------------------chHHHHHHHHHhhcCCCEEEEEe
Confidence 999987421 134567777788 6999998743
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.68 Score=37.28 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=72.2
Q ss_pred CCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchh--hhc-----
Q 025207 42 HPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLE--KRL----- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G-~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~--~~~----- 112 (256)
.+++||=.|++.+ .++.++++.+.++ +++|+.++.++...+.+.+.....+- ...++..|+.+... ...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 5678888887632 3566677776654 67899999887666666555554443 34788888765431 111
Q ss_pred -CCCccEEEECCCCCCCC----C-cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 113 -AGLVDVMVVNPPYVPTP----E-DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 -~~~fD~Ii~npP~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-+.+|+++.|.-+.... . .+.........+.. ...-...+++.+...++++|+++++..
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~---n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNI---SSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHH---HTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHH---hHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 15789999987654311 0 00000000000000 000122355667778888899888663
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.13 Score=44.01 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=57.4
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH---HHHHHHHHHHHHcCCcceEEEc-chhhchhhhcCCCccE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP---YAVEVTRKTLEAHNVHADLINT-DIASGLEKRLAGLVDV 118 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~---~~i~~a~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~fD~ 118 (256)
+++||-.|+ |.++..+++.+... +++|+++|.++ +..+.+++ .|.+ .+.. ++.+.... ..+.+|+
T Consensus 181 g~~VlV~Ga--G~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~--~v~~~~~~~~~~~-~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGT--GPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN--YYNSSNGYDKLKD-SVGKFDV 249 (366)
T ss_dssp TCEEEEESC--HHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE--EEECTTCSHHHHH-HHCCEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc--eechHHHHHHHHH-hCCCCCE
Confidence 899999997 55555555544432 46999999987 76666653 2332 2211 11111111 1257999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHH-HHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKIL-PSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~ 174 (256)
|+.+-.- ...+ +.+.+.|+++|+++++..
T Consensus 250 vid~~g~---------------------------~~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 250 IIDATGA---------------------------DVNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp EEECCCC---------------------------CTHHHHHHGGGEEEEEEEEECSC
T ss_pred EEECCCC---------------------------hHHHHHHHHHHHhcCCEEEEEec
Confidence 9885321 1235 778889999999988543
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.62 Score=37.55 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=58.0
Q ss_pred CCCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhchh--hh-----
Q 025207 41 HHPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASGLE--KR----- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G-~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~~~--~~----- 111 (256)
-+++++|=-|++++ .++.++++.+.++ +++|+.+|.+++..+.+.+.+...+ ....++..|+.+... ..
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~--Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQL--GAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG 81 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 36788998887542 4666677776654 6799999999888888777776544 344777888765421 00
Q ss_pred -cCCCccEEEECCCCC
Q 025207 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-++.|+++.|-.+.
T Consensus 82 ~~~G~iD~lvnnAg~~ 97 (256)
T 4fs3_A 82 KDVGNIDGVYHSIAFA 97 (256)
T ss_dssp HHHCCCSEEEECCCCC
T ss_pred HHhCCCCEEEeccccc
Confidence 127899999987654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=2.1 Score=35.71 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=69.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--c--ceEEEcchhhchhh-hc----
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--H--ADLINTDIASGLEK-RL---- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~--~~~~~~d~~~~~~~-~~---- 112 (256)
....|+++|||-=.- +..+.. ..+..++=+| .|..++..++.+...+. . ..++..|+.+.... ..
T Consensus 102 g~~QvV~LGaGlDTr----a~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~ 175 (310)
T 2uyo_A 102 GIRQFVILASGLDSR----AYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGF 175 (310)
T ss_dssp TCCEEEEETCTTCCH----HHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTC
T ss_pred CCCeEEEeCCCCCch----hhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccC
Confidence 346899999998884 444441 1247899999 69999998888876542 1 26788887762211 11
Q ss_pred -CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 113 -AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 113 -~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
....=++++.-.....+. +....+++.+...+.||+.+++.....
T Consensus 176 d~~~Pt~~i~Egvl~Yl~~-------------------~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 176 DPSARTAWLAEGLLMYLPA-------------------TAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp CTTSCEEEEECSCGGGSCH-------------------HHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCCCCEEEEEechHhhCCH-------------------HHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 122334444332222211 235788899988889999999865443
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.13 E-value=0.13 Score=43.17 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=55.4
Q ss_pred CCCC-EEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-ch-hhchhhhcCCC
Q 025207 41 HHPV-LCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DI-ASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~-~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-d~-~~~~~~~~~~~ 115 (256)
+++. +||-.|+ |.|..++.+++.. +++|++++.+++..+.+++ .|.+. ++.. +. .+.......+.
T Consensus 147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~-----Ga~vi~~~~~~~~~~~~~~----lGa~~-~i~~~~~~~~~~~~~~~~~ 216 (328)
T 1xa0_A 147 TPERGPVLVTGATGGVGSLAVSMLAKR-----GYTVEASTGKAAEHDYLRV----LGAKE-VLAREDVMAERIRPLDKQR 216 (328)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCTTCHHHHHH----TTCSE-EEECC---------CCSCC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHC-----CCEEEEEECCHHHHHHHHH----cCCcE-EEecCCcHHHHHHHhcCCc
Confidence 3454 7999987 4556655555542 5689999999887777654 34332 2211 11 11111112346
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-+-. + ..+..+.+.|+++|+++++.
T Consensus 217 ~d~vid~~g--------------------~--------~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 217 WAAAVDPVG--------------------G--------RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp EEEEEECST--------------------T--------TTHHHHHHTEEEEEEEEECS
T ss_pred ccEEEECCc--------------------H--------HHHHHHHHhhccCCEEEEEe
Confidence 999987421 0 12566778999999998753
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.91 Score=37.46 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=59.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++.++..++.+.+.+...+....++..|+.+... ... -
T Consensus 30 ~gk~vlVTGas-~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 30 DGRAAVVTGGA-SGIGLATATEFARR--GARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 56788888866 55677777777654 5789999999998888877777666666788888776431 111 1
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-+.
T Consensus 107 g~id~lvnnAg~~ 119 (301)
T 3tjr_A 107 GGVDVVFSNAGIV 119 (301)
T ss_dssp SSCSEEEECCCCC
T ss_pred CCCCEEEECCCcC
Confidence 4799999987654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.08 E-value=1.7 Score=34.38 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=59.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.| |+|.++.++++.+.++ +++|++++.++...+...+.+...+....++..|+.+... .. ..
T Consensus 4 ~~k~vlITG-as~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTG-ASRGIGFEVAHALASK--GATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESS-CSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 457788777 4566677788877754 6799999999998888777777666666788888765421 11 12
Q ss_pred CCccEEEECCCCCC
Q 025207 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
+++|++|.|.-+..
T Consensus 81 ~~id~li~~Ag~~~ 94 (247)
T 3lyl_A 81 LAIDILVNNAGITR 94 (247)
T ss_dssp CCCSEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 57899999876543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.55 Score=39.51 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=59.9
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEE--Ecchhhchhhh-cCCCc
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI--NTDIASGLEKR-LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~--~~d~~~~~~~~-~~~~f 116 (256)
.++.+||=.|+|. |.+++.+++.++ ...++++|.+++..+.+++ .|....+. ..|..+..... ....+
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G----~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~~~g~ 230 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALG----AKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRELRFN 230 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTT----CSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGGGCSS
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcC----CcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcccCCc
Confidence 5789999998864 344444454422 2367899999998887764 34432111 12222222221 12457
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+..-. ....++.+.++|++||+++++..
T Consensus 231 d~v~d~~G---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 231 QLILETAG---------------------------VPQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp EEEEECSC---------------------------SHHHHHHHHHHCCTTCEEEECCC
T ss_pred cccccccc---------------------------ccchhhhhhheecCCeEEEEEec
Confidence 88876311 24567788889999999998543
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=1.5 Score=35.99 Aligned_cols=127 Identities=12% Similarity=0.061 Sum_probs=71.1
Q ss_pred CCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025207 42 HPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G-~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
.+++||=.|.++| .++.++++.+.++ +++|+.++.++...+.+++.....+ ...++..|+.+... .. .
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREA--GAELAFTYQGDALKKRVEPLAEELG-AFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHT--TCEEEEEECSHHHHHHHHHHHHHHT-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcC-CceEEECCCCCHHHHHHHHHHHHHh
Confidence 5788898887653 4666677776654 5789999998766555555444433 24677788765421 11 1
Q ss_pred CCCccEEEECCCCCCC----CC-cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 113 AGLVDVMVVNPPYVPT----PE-DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-+++|++|.|.-+... .. .+.........+... ..-...+.+.+.+.++.+|+++.+..
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N---~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLIS---VYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHH---THHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHH---HHHHHHHHHHHHHhccCCCEEEEEee
Confidence 2579999998755421 00 010000000000000 00122345566677778899888663
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.23 Score=40.80 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=39.8
Q ss_pred HHHHHhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCcE-EEEEec--CCCCccEEEEEEEecCc
Q 025207 155 ILPSADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYAA-RIVVQR--STEEENLHIIKFWRDFD 216 (256)
Q Consensus 155 ~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~--~~~~~~~~l~~~~~~~~ 216 (256)
+++.+.++|+|||.+++...... ..+.+...+++. |.. ..+.+. ....|.+++....++..
T Consensus 236 al~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~-F~~Vr~vKP~ASR~StEvf~La~gf~g~~ 301 (320)
T 2hwk_A 236 LTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQ-FKFSRVCKPKSSLEETEVLFVFIGYDRKA 301 (320)
T ss_dssp THHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTT-EEEEEEECCTTCCSTTCEEEEEEEECCCC
T ss_pred HHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHh-cceeeeeCCCCccccceEEEEEEeecCCc
Confidence 57778899999999999776555 455667777654 444 444432 22556666666666533
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.71 E-value=1.3 Score=36.36 Aligned_cols=123 Identities=19% Similarity=0.103 Sum_probs=71.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
+++.+|=-|.+.| ++.++++.+.++ +++|+.+|.+++.++.+.+.+ +-+...+..|+.+... .. .-
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~~--Ga~V~i~~r~~~~l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVAE--GARVFITGRRKDVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 6788888887665 567777777654 679999999998877654433 4444667777655421 00 12
Q ss_pred CCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++.|++|.|--.....+-.. ...+-...+... ..-.-.+.+.+.+.|+.+|.++.+.
T Consensus 102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vN---l~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRN---VKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHH---THHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhccHHHHHHHHHHH---hHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 68999999875433222111 000000000000 0012233566778888999887765
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.60 E-value=2.5 Score=31.78 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=46.3
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc--hhhh-cCCCccEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG--LEKR-LAGLVDVM 119 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~--~~~~-~~~~fD~I 119 (256)
+.+|+=+|+ |.++..+++.|.+.. +..|+++|.+++.++.+++ .+. .++.+|..+. +... .-..+|+|
T Consensus 39 ~~~v~IiG~--G~~G~~~a~~L~~~~-g~~V~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 39 HAQVLILGM--GRIGTGAYDELRARY-GKISLGIEIREEAAQQHRS----EGR--NVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp TCSEEEECC--SHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHHH----TTC--CEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHhcc-CCeEEEEECCHHHHHHHHH----CCC--CEEEcCCCCHHHHHhccCCCCCCEE
Confidence 457887765 677777787776430 4589999999988776543 232 5666776442 1121 12468999
Q ss_pred EECCC
Q 025207 120 VVNPP 124 (256)
Q Consensus 120 i~npP 124 (256)
+...|
T Consensus 110 i~~~~ 114 (183)
T 3c85_A 110 LLAMP 114 (183)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 88533
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.48 E-value=1 Score=36.16 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=55.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-CHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhcC-----
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-NPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRLA----- 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~-~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~~----- 113 (256)
.+++||=.| |+|.++..+++.+.++ +++|++++. ++...+...+.+...+....++.+|+.+... ...+
T Consensus 20 ~~k~vlItG-asggiG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 96 (274)
T 1ja9_A 20 AGKVALTTG-AGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 96 (274)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC--CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 467888777 4677788888887754 568999998 7777666655555545445677888765421 1111
Q ss_pred -CCccEEEECCCCC
Q 025207 114 -GLVDVMVVNPPYV 126 (256)
Q Consensus 114 -~~fD~Ii~npP~~ 126 (256)
+.+|+++.|....
T Consensus 97 ~~~~d~vi~~Ag~~ 110 (274)
T 1ja9_A 97 FGGLDFVMSNSGME 110 (274)
T ss_dssp HSCEEEEECCCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 4789999876543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.47 E-value=0.93 Score=36.38 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=71.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.+|.+++.++...+.+ +....++..|+.+... .. .-
T Consensus 7 ~gk~~lVTGas-~gIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 7 QGKKAIVIGGT-HGMGLATVRRLVEG--GAEVLLTGRNESNIARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 56788888855 55677777777654 679999999988776655543 3334677788765421 00 11
Q ss_pred CCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++|+++.|.-......... ...+....+... ..-...+.+.+.+.++++|+++.+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N---~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVN---TKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHH---THHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHh---hHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 57999999875543221110 000001001000 0012234566777788889888765
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=92.37 E-value=1.4 Score=35.95 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=53.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++.+++.++...+.+...+. ...++..|+.+... ...
T Consensus 27 ~~k~vlITGa-sggIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 27 QGKKVIVTGA-SKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp TTCEEEESSC-SSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4678887775 566777788877654 57899999998887766665554443 34777888765321 111
Q ss_pred CCCccEEEEC
Q 025207 113 AGLVDVMVVN 122 (256)
Q Consensus 113 ~~~fD~Ii~n 122 (256)
-+.+|++|.|
T Consensus 104 ~g~iD~li~n 113 (286)
T 1xu9_A 104 MGGLDMLILN 113 (286)
T ss_dssp HTSCSEEEEC
T ss_pred cCCCCEEEEC
Confidence 1479999987
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.24 Score=41.27 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=55.7
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++.+||=.|+| .|..++.+++.+ +++|++++ +++..+.+++ .|.+ .++. | .+ .. ...+|+|
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~-----Ga~Vi~~~-~~~~~~~~~~----lGa~-~v~~-d-~~---~v-~~g~Dvv 203 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNA-----GYVVDLVS-ASLSQALAAK----RGVR-HLYR-E-PS---QV-TQKYFAI 203 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEC-SSCCHHHHHH----HTEE-EEES-S-GG---GC-CSCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCEEEEEE-ChhhHHHHHH----cCCC-EEEc-C-HH---Hh-CCCccEE
Confidence 688999999994 255555555543 56999999 8888777755 3432 2332 3 21 11 4679999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+-.-. ...+..+.+.|+++|+++.+.
T Consensus 204 ~d~~g----------------------------~~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 204 FDAVN----------------------------SQNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ECC-----------------------------------TTGGGEEEEEEEEEEC
T ss_pred EECCC----------------------------chhHHHHHHHhcCCCEEEEEe
Confidence 76311 111356778999999999863
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.26 E-value=1 Score=37.05 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=72.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC--HHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-----
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN--PYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL----- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~--~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~----- 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.++.+ ....+.+.+.+...+....++..|+.+... ...
T Consensus 48 ~~k~vlVTGa-s~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 48 KDRKALVTGG-DSGIGRAAAIAYARE--GADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5678888885 456677788877654 5689998876 344555555555555555777778765421 110
Q ss_pred -CCCccEEEECCCCCCCCC-c-ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 113 -AGLVDVMVVNPPYVPTPE-D-EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 -~~~fD~Ii~npP~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-+++|+++.|.-...... . +....+....+... ..-...+.+.+.+.++++|+++++..
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN---~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVN---VFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHH---THHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHH---hHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 157999999875432111 1 10100001111000 00123446667778888899888653
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.19 Score=44.08 Aligned_cols=77 Identities=19% Similarity=0.145 Sum_probs=50.1
Q ss_pred CccccCCchHHHHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHH
Q 025207 16 EVYEPCDDSFALVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~la~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
++++.-..+.++.+.+..++..+- ...+..|+|+|.|+|.+...+...+.+..+ ..+++.||+|+...+.-++++..
T Consensus 110 DFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 110 DFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 444443336655555444432211 112579999999999998888776654221 23799999999988877777754
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.19 Score=42.13 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCCC-EEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc-h-hhchhhhcCCC
Q 025207 41 HHPV-LCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD-I-ASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~-~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d-~-~~~~~~~~~~~ 115 (256)
+++. +||=.|+ |.|..++.+++.. +++|++++.+++..+.+++ .|.+ .++..+ . .+.........
T Consensus 148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~-----Ga~vi~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 148 SPEKGSVLVTGATGGVGGIAVSMLNKR-----GYDVVASTGNREAADYLKQ----LGAS-EVISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHH-----TCCEEEEESSSSTHHHHHH----HTCS-EEEEHHHHCSSCCCSSCCCC
T ss_pred CCCCceEEEECCCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH----cCCc-EEEECCCchHHHHHHhhcCC
Confidence 3454 7999987 4555555555542 4689999998877777654 3433 222211 1 11111112346
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 218 ~d~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 218 WQGAVDPVG----------------------------GKQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp EEEEEESCC----------------------------THHHHHHHTTEEEEEEEEECC
T ss_pred ccEEEECCc----------------------------HHHHHHHHHhhcCCCEEEEEe
Confidence 999987421 124677788999999998854
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=1.3 Score=36.41 Aligned_cols=127 Identities=11% Similarity=0.090 Sum_probs=71.3
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|.++ ..++..+++.+.++ +++|+.++.++...+.+.+.....+. ..++..|+.+... ...
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQ--GAEVALTYLSETFKKRVDPLAESLGV-KLTVPCDVSDAESVDNMFKVLAEE 105 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHHTC-CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467888888764 45677777777654 67899999987655555554444332 3677788765421 111
Q ss_pred CCCccEEEECCCCCCC----CC-cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 113 AGLVDVMVVNPPYVPT----PE-DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-+++|++|.|.-+... .. .+....+....+.. ...-...+.+.+.+.++.+|+++.+..
T Consensus 106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~v---N~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHI---SCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHH---HTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 1579999998755421 00 01000000000000 000123345666777788899888663
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=1.5 Score=35.97 Aligned_cols=126 Identities=11% Similarity=0.101 Sum_probs=71.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH-HHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY-AVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~-~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++.++. ..+.+.+.+...+....++..|+.+... ...
T Consensus 46 ~gk~vlVTGas-~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 46 KGKNVLITGGD-SGIGRAVSIAFAKE--GANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56788888855 55677778877654 678999998765 4444455555555555788888866421 111
Q ss_pred CCCccEEEECCCCCCCCC-c-ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYVPTPE-D-EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+++|++|.|.-...... . +....+....+... ..-...+++.+.+.++.+|+++.+.
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN---~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRIN---IFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHH---THHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHH---hHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 157999999864432111 0 00000001111000 0012344566777788899888765
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=91.98 E-value=1.4 Score=35.69 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=60.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
-+++.+|=-|.+.| ++.++++.+.++ +++|+.+|.+++.++.+.+.+...+.+..++..|+.+... .. .
T Consensus 5 L~gKvalVTGas~G-IG~aiA~~la~~--Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 5 LKNKVVIVTGAGSG-IGRAIAKKFALN--DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GTTCEEEEETTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46888888886665 466677776643 6799999999999998888888777666788888765431 00 1
Q ss_pred CCCccEEEECCCC
Q 025207 113 AGLVDVMVVNPPY 125 (256)
Q Consensus 113 ~~~fD~Ii~npP~ 125 (256)
-++.|+++.|--.
T Consensus 82 ~G~iDiLVNNAGi 94 (254)
T 4fn4_A 82 YSRIDVLCNNAGI 94 (254)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCcc
Confidence 2789999998643
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=91.97 E-value=1.6 Score=35.20 Aligned_cols=127 Identities=19% Similarity=0.165 Sum_probs=73.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-CHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-NPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~-~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.++. +.+..+...+.+...+....++..|+.+... ...
T Consensus 17 ~~k~~lVTGas-~gIG~aia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 17 DGKVALVTGSG-RGIGAAVAVHLGRL--GAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp TTCEEEESCTT-SHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56788888855 55677777777654 678888775 4566666666666666556788888766421 111
Q ss_pred CCCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 113 AGLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-+++|++|.|.-......... ...+....+... ..-...+.+.+.+.++++|+++++..
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N---~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLN---TRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHH---THHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHH---hHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 157899998875543222111 000001000000 00122345667777888898887654
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=91.91 E-value=1.1 Score=39.51 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=59.6
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---ch-----------
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DI----------- 104 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~----------- 104 (256)
+++.+||=.|+ |.|..++.+++. .++++++++.+++..+.+++ .|.. .++.. |.
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~-----~Ga~vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALA-----GGANPICVVSSPQKAEICRA----MGAE-AIIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----HTCC-EEEETTTTTCCSEEETTEECH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----cCCeEEEEECCHHHHHHHHh----hCCc-EEEecCcCcccccccccccch
Confidence 67899999987 345565555554 25689999999988887754 3432 12211 11
Q ss_pred ------hhchhhhc-CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 105 ------ASGLEKRL-AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ------~~~~~~~~-~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+...... ...+|+|+-... ...+..+.++|+++|+++++.
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEHPG----------------------------RETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECSC----------------------------HHHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCC----------------------------chhHHHHHHHhhCCcEEEEEe
Confidence 01111211 247999987421 145677788999999998753
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.86 E-value=1.8 Score=34.80 Aligned_cols=81 Identities=21% Similarity=0.207 Sum_probs=57.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.|++.| ++.++++.+.++ +++|+.++.+++..+.+.+.+...+....++..|+.+... .. .-
T Consensus 10 ~~k~vlVTGas~g-IG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 10 TDKVVVISGVGPA-LGTTLARRCAEQ--GADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTCEEEEESCCTT-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCcH-HHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5678888886654 566677776654 6789999999998888877777666556788888766431 11 12
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|.-.
T Consensus 87 g~id~lv~nAg~ 98 (264)
T 3ucx_A 87 GRVDVVINNAFR 98 (264)
T ss_dssp SCCSEEEECCCS
T ss_pred CCCcEEEECCCC
Confidence 579999998643
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.80 E-value=1.2 Score=39.08 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=58.4
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---ch-----------
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DI----------- 104 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~----------- 104 (256)
+++++||=.|+ |.|..++.+++. .++++++++.+++..+.+++ .|... ++.. |+
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~-----~Ga~vi~~~~~~~~~~~~~~----lGa~~-~i~~~~~~~~~~~~~~~~~~ 288 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKN-----GGGIPVAVVSSAQKEAAVRA----LGCDL-VINRAELGITDDIADDPRRV 288 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----TTCCC-EEEHHHHTCCTTGGGCHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHh----cCCCE-EEeccccccccccccccccc
Confidence 57899999986 234555444443 35789999999988887753 34332 2211 11
Q ss_pred -------hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 105 -------ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 -------~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.........+|+|+-+.. ...+....+.|+++|+++++.
T Consensus 289 ~~~~~~~~~~v~~~~g~g~Dvvid~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 289 VETGRKLAKLVVEKAGREPDIVFEHTG----------------------------RVTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHSSCCSEEEECSC----------------------------HHHHHHHHHHSCTTCEEEESC
T ss_pred chhhhHHHHHHHHHhCCCceEEEECCC----------------------------chHHHHHHHHHhcCCEEEEEe
Confidence 11111112346999987521 134667778999999998854
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.77 E-value=1.3 Score=35.51 Aligned_cols=126 Identities=14% Similarity=0.076 Sum_probs=71.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|++. .++.++++.+.++ +++|+.+ +.+++..+.+.+.+...+....++..|+.+... ...
T Consensus 7 ~~k~vlVTGas~-GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 7 TNRTIVVAGAGR-DIGRACAIRFAQE--GANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHT--TCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567888888654 4677777777654 5688887 667776666666666555555788888766421 111
Q ss_pred CCCccEEEECCCCC-CCCCc-ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYV-PTPED-EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+++|+++.|.-.. ..... +....+-...+... ..-...+.+.+.+.++++|+++.+.
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN---~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVN---LTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHH---THHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 15799999986432 11110 10000000000000 0012344566677777788888765
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.3 Score=41.23 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=57.6
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE--cchhhchhhh-cCCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN--TDIASGLEKR-LAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~--~d~~~~~~~~-~~~~ 115 (256)
+++.+||-.|+ |.|..++.+++. .+++|+++ .+++..+.+++ .|.+. +. .++.+..... ....
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~-----~Ga~Vi~~-~~~~~~~~~~~----lGa~~--i~~~~~~~~~~~~~~~~~g 216 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALA-----RGARVFAT-ARGSDLEYVRD----LGATP--IDASREPEDYAAEHTAGQG 216 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH-----TTCEEEEE-ECHHHHHHHHH----HTSEE--EETTSCHHHHHHHHHTTSC
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHH-----CCCEEEEE-eCHHHHHHHHH----cCCCE--eccCCCHHHHHHHHhcCCC
Confidence 57899999984 345555555554 25689999 88887776654 34332 22 1122222121 1246
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-+-. ...+..+.+.|+++|+++.+.
T Consensus 217 ~D~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 217 FDLVYDTLG----------------------------GPVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp EEEEEESSC----------------------------THHHHHHHHHEEEEEEEEESC
T ss_pred ceEEEECCC----------------------------cHHHHHHHHHHhcCCeEEEEc
Confidence 999987421 134667778999999998753
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=0.86 Score=39.71 Aligned_cols=70 Identities=20% Similarity=0.204 Sum_probs=48.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
.+|+=+|+ |.++..+++.|.+. +..|+++|.+++.++.+++ .+ ..++.+|..+.. ....-...|+|++
T Consensus 5 ~~viIiG~--Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~----~g--~~vi~GDat~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 5 MRVIIAGF--GRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRK----FG--MKVFYGDATRMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CSEEEECC--SHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHH----TT--CCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred CeEEEECC--CHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHh----CC--CeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence 45666665 67777788887654 5689999999999987764 23 368888877652 2222357899988
Q ss_pred CC
Q 025207 122 NP 123 (256)
Q Consensus 122 np 123 (256)
..
T Consensus 75 ~~ 76 (413)
T 3l9w_A 75 AI 76 (413)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.45 E-value=1.9 Score=33.57 Aligned_cols=66 Identities=17% Similarity=0.051 Sum_probs=45.2
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEECC
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVNP 123 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~np 123 (256)
||.|.++..+++.|.+. +..|+++|.+++.++...+. . ...++.+|..+.. ....-...|+|++..
T Consensus 6 iG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~l~~~---~--~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 73 (218)
T 3l4b_C 6 IGGETTAYYLARSMLSR--KYGVVIINKDRELCEEFAKK---L--KATIIHGDGSHKEILRDAEVSKNDVVVILT 73 (218)
T ss_dssp ECCHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHH---S--SSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred ECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHH---c--CCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence 34588888888887654 56899999999987764432 1 2368888876542 222235789998853
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.44 E-value=1.5 Score=35.80 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=56.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+|.+++..+.+.+.+...+....++..|+.+... ... -
T Consensus 27 ~~k~~lVTGas-~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 27 PSPVALITGAG-SGIGRATALALAAD--GVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF 103 (283)
T ss_dssp CCCEEEEESCS-SHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56788888855 45677777777654 6799999999988877766665444445778888766421 111 1
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|.-+
T Consensus 104 g~iD~lVnnAg~ 115 (283)
T 3v8b_A 104 GHLDIVVANAGI 115 (283)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 579999998754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.39 E-value=2.1 Score=34.62 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=60.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------h--hc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------K--RL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~--~~ 112 (256)
-.++.+|=-|.+.| ++.++++.+.++ +++|+..|.+++.++.+.+.+...+.+...+..|+.+... . ..
T Consensus 7 L~gKvalVTGas~G-IG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 7 LTGKTALVTGSARG-LGFAYAEGLAAA--GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp CTTCEEEETTCSSH-HHHHHHHHHHHT--TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 46788888886655 566677776654 6799999999999888888777777666677777655421 1 11
Q ss_pred CCCccEEEECCCCCC
Q 025207 113 AGLVDVMVVNPPYVP 127 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~ 127 (256)
-++.|+++.|--...
T Consensus 84 ~G~iDiLVNNAG~~~ 98 (255)
T 4g81_D 84 GIHVDILINNAGIQY 98 (255)
T ss_dssp TCCCCEEEECCCCCC
T ss_pred CCCCcEEEECCCCCC
Confidence 368999999875543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.94 Score=38.71 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=58.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++++|+=+|+ |.++..+++.+... +++|+++|.+++..+.+.+. .+........+..+. .... ..+|+|+.
T Consensus 165 ~~~~V~ViGa--G~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~---~g~~~~~~~~~~~~l-~~~~-~~~DvVi~ 235 (369)
T 2eez_A 165 APASVVILGG--GTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDV---FGGRVITLTATEANI-KKSV-QHADLLIG 235 (369)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH---TTTSEEEEECCHHHH-HHHH-HHCSEEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHh---cCceEEEecCCHHHH-HHHH-hCCCEEEE
Confidence 5689999997 67777777776543 56999999999877665542 232211111121111 1111 36899998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.+...... ..-+.+...+.+++||+++.+.
T Consensus 236 ~~g~~~~~~---------------------~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 236 AVLVPGAKA---------------------PKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp CCC----------------------------CCSCHHHHTTSCTTCEEEECC
T ss_pred CCCCCcccc---------------------chhHHHHHHHhhcCCCEEEEEe
Confidence 766421000 0011344566789999887644
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.32 Score=41.19 Aligned_cols=94 Identities=12% Similarity=0.148 Sum_probs=54.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhc-CCCccEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRL-AGLVDVM 119 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~-~~~fD~I 119 (256)
.+|| +-.|+|.++..+.+.+... +++|+++|.+++..+.+++ .|.+ .++.. ++.+...... ...+|+|
T Consensus 166 ~~vl-i~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~-~~~~~~~~~~~~~v~~~~~~~g~D~v 237 (349)
T 3pi7_A 166 KAFV-MTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGAA-HVLNEKAPDFEATLREVMKAEQPRIF 237 (349)
T ss_dssp SEEE-ESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTCS-EEEETTSTTHHHHHHHHHHHHCCCEE
T ss_pred CEEE-EeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCC-EEEECCcHHHHHHHHHHhcCCCCcEE
Confidence 4555 4445555555555444332 5699999999988887764 3433 22222 2222222211 1369999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+-+-. ...+..+.+.|+++|+++++.
T Consensus 238 id~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 238 LDAVT----------------------------GPLASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp EESSC----------------------------HHHHHHHHHHSCTTCEEEECC
T ss_pred EECCC----------------------------ChhHHHHHhhhcCCCEEEEEe
Confidence 87421 122466778999999999864
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=90.67 E-value=0.81 Score=38.80 Aligned_cols=99 Identities=9% Similarity=0.116 Sum_probs=54.1
Q ss_pred CCC-CEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE------cchhhchhhh
Q 025207 41 HHP-VLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN------TDIASGLEKR 111 (256)
Q Consensus 41 ~~~-~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~------~d~~~~~~~~ 111 (256)
+++ .+||=.|+ |.|..++.+++.+ +++++++..+++..+..++.+...|.+ .++. .|+.+.....
T Consensus 165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~-----Ga~vi~~~~~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~i~~~ 238 (364)
T 1gu7_A 165 TPGKDWFIQNGGTSAVGKYASQIGKLL-----NFNSISVIRDRPNLDEVVASLKELGAT-QVITEDQNNSREFGPTIKEW 238 (364)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHH-----TCEEEEEECCCTTHHHHHHHHHHHTCS-EEEEHHHHHCGGGHHHHHHH
T ss_pred CCCCcEEEECCCCcHHHHHHHHHHHHC-----CCEEEEEecCccccHHHHHHHHhcCCe-EEEecCccchHHHHHHHHHH
Confidence 477 89998886 3556666666653 457777765443311111222334543 2222 2222222221
Q ss_pred c---CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 112 L---AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~---~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
. ...+|+|+-.-. -.... .+.++|+++|+++.+.
T Consensus 239 t~~~~~g~Dvvid~~G---------------------------~~~~~-~~~~~l~~~G~~v~~g 275 (364)
T 1gu7_A 239 IKQSGGEAKLALNCVG---------------------------GKSST-GIARKLNNNGLMLTYG 275 (364)
T ss_dssp HHHHTCCEEEEEESSC---------------------------HHHHH-HHHHTSCTTCEEEECC
T ss_pred hhccCCCceEEEECCC---------------------------chhHH-HHHHHhccCCEEEEec
Confidence 1 346999987421 12233 5678999999998854
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.58 E-value=1.8 Score=35.39 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=55.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh--hhc----
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE--KRL---- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~--~~~---- 112 (256)
.+++||=.|++ |.++.++++.+.+++. ...|+.++.+++..+.+.+.+... +....++..|+.+... ...
T Consensus 32 ~~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 32 AKKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred CCCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 56888888865 5556667776654322 248999999998888777766654 3344777888765431 111
Q ss_pred --CCCccEEEECCCCC
Q 025207 113 --AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 --~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 111 ~~~g~iD~lVnnAG~~ 126 (287)
T 3rku_A 111 QEFKDIDILVNNAGKA 126 (287)
T ss_dssp GGGCSCCEEEECCCCC
T ss_pred HhcCCCCEEEECCCcC
Confidence 14799999987543
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=90.50 E-value=2.7 Score=33.40 Aligned_cols=81 Identities=10% Similarity=0.072 Sum_probs=54.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcch--hhch--hhh-----
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDI--ASGL--EKR----- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~--~~~~--~~~----- 111 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+|.+++..+.+.+.+...+- ...++..|+ .+.. ...
T Consensus 11 ~~k~vlVTGas-~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 11 NDRIILVTGAS-DGIGREAAMTYARY--GATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH
Confidence 56788888854 56677777777654 67999999999888777666654332 346777777 3221 111
Q ss_pred -cCCCccEEEECCCC
Q 025207 112 -LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 -~~~~fD~Ii~npP~ 125 (256)
.-+++|++|.|.-.
T Consensus 88 ~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHCSCCSEEEECCCC
T ss_pred HhCCCCCEEEECCcc
Confidence 12579999998754
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.31 E-value=3.4 Score=33.35 Aligned_cols=128 Identities=16% Similarity=0.072 Sum_probs=72.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC-HHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-----
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN-PYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL----- 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~-~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~----- 112 (256)
-.++++|=.|++ |.++.++++.+.++ +++|+.++.+ .+..+...+.+...+....++..|+.+... ...
T Consensus 29 l~gk~~lVTGas-~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 29 LAGKTAFVTGGS-RGIGAAIAKRLALE--GAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp CTTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-cHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 367888888865 45677777777654 6788888654 455666566665555555778888765421 111
Q ss_pred -CCCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 113 -AGLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 -~~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-+++|++|.|.-......... ...+....+... ..-...+++.+.+.++++|.++++..
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN---~~g~~~~~~~~~~~m~~~g~iv~isS 166 (271)
T 3v2g_A 106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVN---FRAPFVAIRSASRHLGDGGRIITIGS 166 (271)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH---THHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHH---hHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 147999999875543222110 000000000000 00122345666777888888887643
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=90.24 E-value=2.4 Score=34.04 Aligned_cols=126 Identities=14% Similarity=0.089 Sum_probs=70.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC---HHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc----
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN---PYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL---- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~---~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~---- 112 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++.+ .+..+.+.+.+...+....++..|+.+... ...
T Consensus 10 ~~k~vlVTGas-~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 10 KNKVIVIAGGI-KNLGALTAKTFALE--SVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHTTS--SCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 56788888865 45677788887754 6789988654 444555555555445445778888765421 111
Q ss_pred --CCCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 --AGLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 --~~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+++|++|.|.-......... ...+....+.. ...-...+.+.+.+.|+++|.++++.
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~---N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTI---NNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHH---HHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH---HhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 157999999875443222110 00000000000 00012234556667777889888765
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=2.3 Score=34.51 Aligned_cols=83 Identities=25% Similarity=0.284 Sum_probs=55.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC----------------HHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN----------------PYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~----------------~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.++++|=.|++.| ++.++++.+.++ +++|+.+|.+ ++.++...+.+...+....++..|+.
T Consensus 10 ~~k~~lVTGas~g-IG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 10 EGKVAFVTGAARG-QGRSHAVRLAQE--GADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHT--TCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHC--CCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 5678888887654 566777777654 6789999987 66666666655555545577788876
Q ss_pred hchh--hhc------CCCccEEEECCCCCC
Q 025207 106 SGLE--KRL------AGLVDVMVVNPPYVP 127 (256)
Q Consensus 106 ~~~~--~~~------~~~fD~Ii~npP~~~ 127 (256)
+... ... -+++|++|.|.-+..
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 116 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGN 116 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccC
Confidence 5421 111 157999999876543
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.37 Score=40.77 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=51.0
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE--cchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN--TDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG--~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~f 116 (256)
+++.+||=.|++ .|..++.+++. ..+..|++++ +++..+.++ .|.. .++. .|+.+.......+.+
T Consensus 141 ~~g~~VlV~Ga~G~vG~~a~qla~~----~g~~~V~~~~-~~~~~~~~~-----~ga~-~~~~~~~~~~~~~~~~~~~g~ 209 (349)
T 4a27_A 141 REGMSVLVHSAGGGVGQAVAQLCST----VPNVTVFGTA-STFKHEAIK-----DSVT-HLFDRNADYVQEVKRISAEGV 209 (349)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHTT----STTCEEEEEE-CGGGHHHHG-----GGSS-EEEETTSCHHHHHHHHCTTCE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHH----cCCcEEEEeC-CHHHHHHHH-----cCCc-EEEcCCccHHHHHHHhcCCCc
Confidence 578999999884 34444333333 2356899988 554444433 3332 2322 222222223334579
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+-.-. ...+..+.++|+++|+++++.
T Consensus 210 Dvv~d~~g----------------------------~~~~~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 210 DIVLDCLC----------------------------GDNTGKGLSLLKPLGTYILYG 238 (349)
T ss_dssp EEEEEECC-----------------------------------CTTEEEEEEEEEEC
T ss_pred eEEEECCC----------------------------chhHHHHHHHhhcCCEEEEEC
Confidence 99986311 011366788999999999864
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=89.75 E-value=0.51 Score=40.08 Aligned_cols=96 Identities=16% Similarity=0.054 Sum_probs=55.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+||=+|+| .++..+.+.+... +++|+++|.+++..+.+++ ..|.+ .++..+-.+..... .+.+|+|+-
T Consensus 180 ~g~~VlV~GaG--~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~-~vi~~~~~~~~~~~-~~g~D~vid 250 (357)
T 2cf5_A 180 PGLRGGILGLG--GVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGAD-DYVIGSDQAKMSEL-ADSLDYVID 250 (357)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCCS-CEEETTCHHHHHHS-TTTEEEEEE
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCCc-eeeccccHHHHHHh-cCCCCEEEE
Confidence 78999999864 4444444433322 4689999999887766552 23433 23222111111121 246999987
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-.- ...+..+.+.|+++|+++++.
T Consensus 251 ~~g~---------------------------~~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 251 TVPV---------------------------HHALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp CCCS---------------------------CCCSHHHHTTEEEEEEEEECS
T ss_pred CCCC---------------------------hHHHHHHHHHhccCCEEEEeC
Confidence 4221 012455667899999998754
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=89.69 E-value=4.9 Score=32.90 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=55.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC------------HHHHHHHHHHHHHcCCcceEEEcchhhchh
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN------------PYAVEVTRKTLEAHNVHADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~------------~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~ 109 (256)
.++++|=.|++.| ++.++++.+.++ +++|+++|.+ ++.++.+.+.+...+....++..|+.+...
T Consensus 27 ~gk~~lVTGas~G-IG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 103 (299)
T 3t7c_A 27 EGKVAFITGAARG-QGRSHAITLARE--GADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDA 103 (299)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHT--TCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHC--CCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 5678888886654 567777777654 6799999987 666666666666666555788888765421
Q ss_pred --hhc------CCCccEEEECCCCC
Q 025207 110 --KRL------AGLVDVMVVNPPYV 126 (256)
Q Consensus 110 --~~~------~~~fD~Ii~npP~~ 126 (256)
... -+++|++|.|.-..
T Consensus 104 v~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 104 MQAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 111 15799999987543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=0.42 Score=40.76 Aligned_cols=96 Identities=18% Similarity=0.086 Sum_probs=56.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+||=+|+ |.++..+++.+.. .+++|++++.+++..+.+++ ..|.+ .++..+-.+..... .+.+|+|+.
T Consensus 187 ~g~~VlV~Ga--G~vG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~---~lGa~-~v~~~~~~~~~~~~-~~~~D~vid 257 (366)
T 1yqd_A 187 PGKHIGIVGL--GGLGHVAVKFAKA--FGSKVTVISTSPSKKEEALK---NFGAD-SFLVSRDQEQMQAA-AGTLDGIID 257 (366)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHH---TSCCS-EEEETTCHHHHHHT-TTCEEEEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH---hcCCc-eEEeccCHHHHHHh-hCCCCEEEE
Confidence 7889999986 4555555554432 25689999999887766543 23432 22222111112221 247999987
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+-.- ...++.+.+.|+++|+++.+.
T Consensus 258 ~~g~---------------------------~~~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 258 TVSA---------------------------VHPLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp CCSS---------------------------CCCSHHHHHHEEEEEEEEECC
T ss_pred CCCc---------------------------HHHHHHHHHHHhcCCEEEEEc
Confidence 5321 011345567889999988754
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.55 E-value=3.1 Score=33.54 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=69.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEe-CCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATD-INPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD-~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.++ .++...+...+.+...+....++..|+.+... ...
T Consensus 26 ~~k~~lVTGas-~GIG~aia~~la~~--G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 102 (267)
T 3u5t_A 26 TNKVAIVTGAS-RGIGAAIAARLASD--GFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEA 102 (267)
T ss_dssp -CCEEEEESCS-SHHHHHHHHHHHHH--TCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788877855 45566677776654 56888774 45666666666666555555777888765421 111
Q ss_pred CCCccEEEECCCCCCCCCccccc-ccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGR-EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+++|++|.|.-........... .+-...+.. ...-...+++.+.+.++++|+++.+.
T Consensus 103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~v---N~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAV---NLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHH---HHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 15799999987654322211100 000000000 00012234556677778889888765
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.53 E-value=2.9 Score=33.75 Aligned_cols=83 Identities=23% Similarity=0.213 Sum_probs=55.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-------------CHHHHHHHHHHHHHcCCcceEEEcchhhch
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-------------NPYAVEVTRKTLEAHNVHADLINTDIASGL 108 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~-------------~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~ 108 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.+|. +++.++...+.+...+....++..|+.+..
T Consensus 10 ~~k~~lVTGas-~GIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 10 EGRVAFITGAA-RGQGRAHAVRMAAE--GADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCc-cHHHHHHHHHHHHc--CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 56788888855 45566777777654 679999998 677776666666655555577788876542
Q ss_pred h--hhc------CCCccEEEECCCCCC
Q 025207 109 E--KRL------AGLVDVMVVNPPYVP 127 (256)
Q Consensus 109 ~--~~~------~~~fD~Ii~npP~~~ 127 (256)
. ... -+++|++|.|.-...
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~ 113 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAA 113 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 1 111 157999999875543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=89.31 E-value=2.2 Score=34.12 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=56.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------- 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++.+++..+...+.+...+....++..|+.+... ...
T Consensus 8 ~~k~vlVTGa-s~giG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 8 EGCTALVTGG-SRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678887775 566777788877654 5789999999887776666555444444677888765421 111
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
.+.+|++|.|.-..
T Consensus 85 ~g~id~lv~~Ag~~ 98 (260)
T 2ae2_A 85 HGKLNILVNNAGIV 98 (260)
T ss_dssp TTCCCEEEECCCCC
T ss_pred CCCCCEEEECCCCC
Confidence 16799999987543
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.11 E-value=2.4 Score=34.24 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=56.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh-------c
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR-------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~-------~ 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++.+++..+.+.+.+...+....++..|+.+... .. .
T Consensus 20 ~~k~vlVTGa-s~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 20 KGTTALVTGG-SKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678888885 566677788877654 5789999999887776666655545455777888765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
.+.+|++|.|.-..
T Consensus 97 ~g~id~lv~nAg~~ 110 (273)
T 1ae1_A 97 DGKLNILVNNAGVV 110 (273)
T ss_dssp TSCCCEEEECCCCC
T ss_pred CCCCcEEEECCCCC
Confidence 26899999987543
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=89.01 E-value=4.6 Score=32.25 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=54.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.+ +.++...+...+.+...+....++..|+.+... ...
T Consensus 3 ~~k~vlVTGa-s~gIG~aia~~l~~~--G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (258)
T 3oid_A 3 QNKCALVTGS-SRGVGKAAAIRLAEN--GYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDET 79 (258)
T ss_dssp CCCEEEESSC-SSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecC-CchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567777775 456677788877654 5688886 788887777776666555555788888765421 110
Q ss_pred CCCccEEEECCCC
Q 025207 113 AGLVDVMVVNPPY 125 (256)
Q Consensus 113 ~~~fD~Ii~npP~ 125 (256)
-+++|++|.|.-.
T Consensus 80 ~g~id~lv~nAg~ 92 (258)
T 3oid_A 80 FGRLDVFVNNAAS 92 (258)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1578999998754
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.79 E-value=4.1 Score=32.91 Aligned_cols=83 Identities=24% Similarity=0.260 Sum_probs=56.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-------------CHHHHHHHHHHHHHcCCcceEEEcchhhch
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-------------NPYAVEVTRKTLEAHNVHADLINTDIASGL 108 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~-------------~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~ 108 (256)
.+++||=.|++. .++.++++.+.++ +++|+++|. +++.++.+.+.+...+....++..|+.+..
T Consensus 14 ~gk~~lVTGas~-gIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 90 (280)
T 3pgx_A 14 QGRVAFITGAAR-GQGRSHAVRLAAE--GADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDA 90 (280)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHC--CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 567888888654 5567777777654 679999997 677777776666655555577788876542
Q ss_pred h--hhc------CCCccEEEECCCCCC
Q 025207 109 E--KRL------AGLVDVMVVNPPYVP 127 (256)
Q Consensus 109 ~--~~~------~~~fD~Ii~npP~~~ 127 (256)
. ... -+++|++|.|.-...
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~~~ 117 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGVLS 117 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 1 111 157999999875543
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=88.72 E-value=3.4 Score=33.30 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=50.7
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025207 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
.+++||=.|++ +|.++.++++.+.++ +++|+.++.++..-+.+++.....+ ...++..|+.+... .. .
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQ--GATLAFTYLNESLEKRVRPIAQELN-SPYVYELDVSKEEHFKSLYNSVKKD 81 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTT--TCEEEEEESSTTTHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788888876 377888888887754 6789999988752222222212222 23677778765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 82 ~g~id~lv~nAg~~ 95 (275)
T 2pd4_A 82 LGSLDFIVHSVAFA 95 (275)
T ss_dssp TSCEEEEEECCCCC
T ss_pred cCCCCEEEECCccC
Confidence 25789999987543
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=88.67 E-value=1.3 Score=36.06 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=38.1
Q ss_pred CCccEEEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC--HHHHHHHHHHc
Q 025207 114 GLVDVMVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND--PSQICLQMMEK 189 (256)
Q Consensus 114 ~~fD~Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~ 189 (256)
++||+|++|. ||....=-+ .++....+.-+-....+.|+|||.+++..-++-. .+.+...+.+
T Consensus 210 grYDlVfvNv~TpyR~HHYQQ------------CeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alAR- 276 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQ------------CVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGR- 276 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHH------------HHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHT-
T ss_pred CceeEEEEecCCccccchHHH------------HHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHh-
Confidence 7999999986 443211000 0011111223345678899999999997654432 2344444443
Q ss_pred CCcEEEEE
Q 025207 190 GYAARIVV 197 (256)
Q Consensus 190 g~~~~~~~ 197 (256)
.|....+.
T Consensus 277 kF~~~rv~ 284 (324)
T 3trk_A 277 KFRSSRAL 284 (324)
T ss_dssp TEEEEEEE
T ss_pred hheeeeee
Confidence 45544433
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.66 E-value=2.8 Score=33.46 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=54.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh---c
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR---L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~---~ 112 (256)
.++++|=.| |+|.++.++++.+.++ +++|+.++.+++..+.+.+.+...+....++..|+.+... .. .
T Consensus 4 ~~k~vlVTG-as~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T 2qq5_A 4 NGQVCVVTG-ASRGIGRGIALQLCKA--GATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQ 80 (260)
T ss_dssp TTCEEEESS-TTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 457777777 4566777888877754 5789999999887776666555445444677788765421 11 0
Q ss_pred CCCccEEEECC
Q 025207 113 AGLVDVMVVNP 123 (256)
Q Consensus 113 ~~~fD~Ii~np 123 (256)
-+++|++|.|.
T Consensus 81 ~g~id~lvnnA 91 (260)
T 2qq5_A 81 QGRLDVLVNNA 91 (260)
T ss_dssp TTCCCEEEECC
T ss_pred CCCceEEEECC
Confidence 36789999986
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=88.61 E-value=1.2 Score=36.02 Aligned_cols=80 Identities=14% Similarity=0.175 Sum_probs=51.4
Q ss_pred CCCEEEEecc-cccHHHHHHHHHhcccCCCceEEEEeCCHHH-HHHHHHHHHHcCCcceEEEcchhhchh--hhc-----
Q 025207 42 HPVLCMEVGC-GSGYVITSLALMLGQEVPGVQYIATDINPYA-VEVTRKTLEAHNVHADLINTDIASGLE--KRL----- 112 (256)
Q Consensus 42 ~~~~VLDlGc-G~G~~~~~la~~l~~~~~~~~v~giD~~~~~-i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~----- 112 (256)
.+++||=.|+ |+|.++.++++.+.++ +++|+.++.++.. .+...+ ..+....++..|+.+... ...
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQ--GAQLVLTGFDRLRLIQRITD---RLPAKAPLLELDVQNEEHLASLAGRVTE 80 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHT--TCEEEEEECSCHHHHHHHHT---TSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHC--CCEEEEEecChHHHHHHHHH---hcCCCceEEEccCCCHHHHHHHHHHHHH
Confidence 4678888898 4788888888887754 5789999987653 232222 222233677788765421 111
Q ss_pred -CC---CccEEEECCCCC
Q 025207 113 -AG---LVDVMVVNPPYV 126 (256)
Q Consensus 113 -~~---~fD~Ii~npP~~ 126 (256)
-+ ++|++|.|.-..
T Consensus 81 ~~g~~~~iD~lv~nAg~~ 98 (269)
T 2h7i_A 81 AIGAGNKLDGVVHSIGFM 98 (269)
T ss_dssp HHCTTCCEEEEEECCCCC
T ss_pred HhCCCCCceEEEECCccC
Confidence 13 799999986543
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=4.5 Score=32.70 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=68.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH-HHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY-AVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~-~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++.++. ..+.+.+.+...+....++..|+.+... ...
T Consensus 28 ~~k~vlVTGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 104 (283)
T 1g0o_A 28 EGKVALVTGA-GRGIGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 104 (283)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4677887775 456777788877654 678999988754 3444444455445445677778754321 100
Q ss_pred CCCccEEEECCCCCCCCCcc-cccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYVPTPEDE-VGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+.+|++|.|.-........ ....+....+... ..-...+++.+.+.|+.+|+++++.
T Consensus 105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N---~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTIN---TRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH---THHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHh---hHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 15789999987544321111 0000000000000 0012234455666667778888765
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.54 E-value=4.7 Score=32.02 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=55.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--C-CcceEEEcchhhchh--hhc----
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--N-VHADLINTDIASGLE--KRL---- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~-~~~~~~~~d~~~~~~--~~~---- 112 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.++.+++..+.+.+.+... + ....++..|+.+... ...
T Consensus 6 ~~k~~lVTGas-~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 6 QKGLAIITGAS-QGIGAVIAAGLATD--GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp CCCEEEEESTT-SHHHHHHHHHHHHH--TCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence 56778877765 55566777776654 569999999998888777766554 2 233678888766421 111
Q ss_pred --CCCccEEEECCCCC
Q 025207 113 --AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 --~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 83 ~~~g~iD~lvnnAg~~ 98 (250)
T 3nyw_A 83 QKYGAVDILVNAAAMF 98 (250)
T ss_dssp HHHCCEEEEEECCCCC
T ss_pred HhcCCCCEEEECCCcC
Confidence 15799999987554
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.32 E-value=7.8 Score=30.34 Aligned_cols=82 Identities=10% Similarity=0.124 Sum_probs=55.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcch--hhch------hhh-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDI--ASGL------EKR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~--~~~~------~~~- 111 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++.++...+.+.+.+...+. ...++..|+ .+.. ...
T Consensus 13 ~~k~vlITGas-~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~ 89 (247)
T 3i1j_A 13 KGRVILVTGAA-RGIGAAAARAYAAH--GASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE 89 (247)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHC--CCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH
Confidence 56788877764 66677778877654 56899999999988887777766553 335666665 2211 110
Q ss_pred -cCCCccEEEECCCCC
Q 025207 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+++|++|.|.-+.
T Consensus 90 ~~~g~id~lv~nAg~~ 105 (247)
T 3i1j_A 90 HEFGRLDGLLHNASII 105 (247)
T ss_dssp HHHSCCSEEEECCCCC
T ss_pred HhCCCCCEEEECCccC
Confidence 014799999987653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=88.15 E-value=1.3 Score=39.10 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=49.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
.+|+= ||.|.++..+++.|..+ +..|+.+|.+++.++.+.+.+ +..++.+|..+.. ....-+..|++++
T Consensus 4 M~iiI--~G~G~vG~~la~~L~~~--~~~v~vId~d~~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~Agi~~ad~~ia 74 (461)
T 4g65_A 4 MKIII--LGAGQVGGTLAENLVGE--NNDITIVDKDGDRLRELQDKY-----DLRVVNGHASHPDVLHEAGAQDADMLVA 74 (461)
T ss_dssp EEEEE--ECCSHHHHHHHHHTCST--TEEEEEEESCHHHHHHHHHHS-----SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred CEEEE--ECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHhc-----CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence 34444 45567888889988643 568999999999998776543 3478889987652 2333467899988
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=3 Score=33.37 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=50.7
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|++ +|.++.++++.+.++ +++|+.++.+++..+.+++.....+ ...++..|+.+... ...
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEA--GAEVALSYQAERLRPEAEKLAEALG-GALLFRADVTQDEELDALFAGVKEA 83 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHHHHHHTT-CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcC-CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788888886 377788888877655 5689999988752222222222222 13677788765421 111
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 84 ~g~iD~lv~~Ag~~ 97 (261)
T 2wyu_A 84 FGGLDYLVHAIAFA 97 (261)
T ss_dssp HSSEEEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14789999987543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=88.12 E-value=7.3 Score=34.28 Aligned_cols=96 Identities=14% Similarity=0.191 Sum_probs=57.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------C-C-----cc--eEEEcchhhch
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------N-V-----HA--DLINTDIASGL 108 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~-~-----~~--~~~~~d~~~~~ 108 (256)
.+|.=||+|. ++..++..+.+ .+..|+++|.+++.++.+.+.+..+ + + .. .-+..|.. .
T Consensus 38 ~kV~VIGaG~--MG~~iA~~la~--~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~- 111 (463)
T 1zcj_A 38 SSVGVLGLGT--MGRGIAISFAR--VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-E- 111 (463)
T ss_dssp CEEEEECCSH--HHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-G-
T ss_pred CEEEEECcCH--HHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-H-
Confidence 5688887764 44445555543 3568999999999988776644311 1 0 00 11233331 1
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
-...|+||..-|- .......++..+...++++.+++.
T Consensus 112 ----~~~aDlVIeaVpe----------------------~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 112 ----LSTVDLVVEAVFE----------------------DMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp ----GTTCSEEEECCCS----------------------CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred ----HCCCCEEEEcCCC----------------------CHHHHHHHHHHHHhhCCCCeEEEe
Confidence 1467999986541 123346777888888888877664
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=88.03 E-value=6.5 Score=31.26 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=53.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.+|.+++..+...+.+ +....++..|+.+... .. .-
T Consensus 7 ~~k~vlVTGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 7 EGKSALITGS-ARGIGRAFAEAYVRE--GATVAIADIDIERARQAAAEI---GPAAYAVQMDVTRQDSIDAAIAATVEHA 80 (259)
T ss_dssp TTCEEEEETC-SSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh---CCCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 5678888884 566677788877654 678999999988766554433 3334677788765421 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-..
T Consensus 81 g~id~lv~~Ag~~ 93 (259)
T 4e6p_A 81 GGLDILVNNAALF 93 (259)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCCcC
Confidence 4799999987654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=2.3 Score=36.45 Aligned_cols=44 Identities=18% Similarity=0.137 Sum_probs=33.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
-++++|+=+|+ |.++..+++.+.. -+++|+++|.+++..+.+++
T Consensus 166 l~g~~V~ViG~--G~iG~~~a~~a~~--~Ga~V~~~d~~~~~l~~~~~ 209 (377)
T 2vhw_A 166 VEPADVVVIGA--GTAGYNAARIANG--MGATVTVLDINIDKLRQLDA 209 (377)
T ss_dssp BCCCEEEEECC--SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHH
Confidence 36789999997 6777777776653 35699999999988776654
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.95 E-value=4.7 Score=32.34 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=55.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.+ +.+++..+...+.+...+....++..|+.+... ...
T Consensus 25 ~~k~vlITGa-s~gIG~a~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 25 DTPVVLVTGG-SRGIGAAVCRLAARQ--GWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ 101 (272)
T ss_dssp CSCEEEETTT-TSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4567777775 556677788877654 5678666 677777777777666655555788888765421 110
Q ss_pred CCCccEEEECCCCCC
Q 025207 113 AGLVDVMVVNPPYVP 127 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~ 127 (256)
-+.+|++|.|.-+..
T Consensus 102 ~g~id~li~nAg~~~ 116 (272)
T 4e3z_A 102 FGRLDGLVNNAGIVD 116 (272)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred CCCCCEEEECCCCCC
Confidence 147899999875543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=87.94 E-value=7.7 Score=31.02 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=55.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--CcceEEEcchhhchh--hh--cCCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHADLINTDIASGLE--KR--LAGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~~~~~~d~~~~~~--~~--~~~~ 115 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+|.+++..+.+.+.+...+ ....++..|+.+... .. .-++
T Consensus 9 ~~k~~lVTGas-~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~ 85 (267)
T 3t4x_A 9 KGKTALVTGST-AGIGKAIATSLVAE--GANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPK 85 (267)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCC
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCC
Confidence 56788877854 55677778777654 6799999999988877766665543 223667777765321 11 1257
Q ss_pred ccEEEECCCCC
Q 025207 116 VDVMVVNPPYV 126 (256)
Q Consensus 116 fD~Ii~npP~~ 126 (256)
+|+++.|.-..
T Consensus 86 id~lv~nAg~~ 96 (267)
T 3t4x_A 86 VDILINNLGIF 96 (267)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 99999987544
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=87.82 E-value=6.9 Score=32.32 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=55.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC------------HHHHHHHHHHHHHcCCcceEEEcchhhchh
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN------------PYAVEVTRKTLEAHNVHADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~------------~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~ 109 (256)
.+++||=.|++ |.++.++++.+.++ +++|+++|.+ ++.++...+.+...+....++..|+.+...
T Consensus 45 ~gk~~lVTGas-~GIG~aia~~la~~--G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 45 QGKVAFITGAA-RGQGRTHAVRLAQD--GADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLAS 121 (317)
T ss_dssp TTCEEEESSCS-SHHHHHHHHHHHHT--TCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHC--CCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 56788877865 45567777777654 6789999876 666666666666556555788888765421
Q ss_pred --hhc------CCCccEEEECCCCC
Q 025207 110 --KRL------AGLVDVMVVNPPYV 126 (256)
Q Consensus 110 --~~~------~~~fD~Ii~npP~~ 126 (256)
... -+++|++|.|.-..
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~~ 146 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGIS 146 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 111 15799999987543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=87.82 E-value=5.2 Score=31.19 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=55.5
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-HcCCcceEEEcchhhchh--hhcC------
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-AHNVHADLINTDIASGLE--KRLA------ 113 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-~~~~~~~~~~~d~~~~~~--~~~~------ 113 (256)
+++||=.|+ +|.++.++++.+.++ +++|+.++.+++..+.+.+.+. ..+....++..|+.+... ...+
T Consensus 2 ~k~vlITGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 2 MKVAVITGA-SRGIGEAIARALARD--GYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERF 78 (235)
T ss_dssp CCEEEEESC-SSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 456777775 566777788877654 5689999999888777666554 445555788888866431 1111
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|.-..
T Consensus 79 g~id~li~~Ag~~ 91 (235)
T 3l77_A 79 GDVDVVVANAGLG 91 (235)
T ss_dssp SSCSEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 4799999987554
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.80 E-value=4.9 Score=29.14 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=45.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC-HHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN-PYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMV 120 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~-~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii 120 (256)
.+|+=+| .|.++..+++.|.+. +..|+.+|.+ ++..+...... .....++.+|..+.. ....-...|+|+
T Consensus 4 ~~vlI~G--~G~vG~~la~~L~~~--g~~V~vid~~~~~~~~~~~~~~---~~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 4 DHFIVCG--HSILAINTILQLNQR--GQNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp SCEEEEC--CSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CcEEEEC--CCHHHHHHHHHHHHC--CCCEEEEECCChHHHHHHHHhh---cCCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence 4566555 488888888887653 5689999997 45444433321 112378888876542 222235789998
Q ss_pred ECC
Q 025207 121 VNP 123 (256)
Q Consensus 121 ~np 123 (256)
+..
T Consensus 77 ~~~ 79 (153)
T 1id1_A 77 ALS 79 (153)
T ss_dssp ECS
T ss_pred Eec
Confidence 853
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.78 E-value=1.2 Score=37.83 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=43.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc--hhhchhhhcCC-Ccc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD--IASGLEKRLAG-LVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d--~~~~~~~~~~~-~fD 117 (256)
+++.+||=.|+| .++..+.+.+.. .++++|+++|.+++..+.+++ .|.+ .++..+ +.+.......+ .+|
T Consensus 185 ~~g~~VlV~GaG--~vG~~avqlak~-~~Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~v~~~~~g~g~D 256 (359)
T 1h2b_A 185 YPGAYVAIVGVG--GLGHIAVQLLKV-MTPATVIALDVKEEKLKLAER----LGAD-HVVDARRDPVKQVMELTRGRGVN 256 (359)
T ss_dssp CTTCEEEEECCS--HHHHHHHHHHHH-HCCCEEEEEESSHHHHHHHHH----TTCS-EEEETTSCHHHHHHHHTTTCCEE
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----hCCC-EEEeccchHHHHHHHHhCCCCCc
Confidence 578999999974 344444443332 225689999999988887753 3433 222211 11222222223 699
Q ss_pred EEEEC
Q 025207 118 VMVVN 122 (256)
Q Consensus 118 ~Ii~n 122 (256)
+|+-.
T Consensus 257 vvid~ 261 (359)
T 1h2b_A 257 VAMDF 261 (359)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99874
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.68 E-value=1.9 Score=35.15 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=55.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+|.+++..+.+.+.+...+....++..|+.+... ... -
T Consensus 7 ~gk~vlVTGas-~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (280)
T 3tox_A 7 EGKIAIVTGAS-SGIGRAAALLFARE--GAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF 83 (280)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHT--TCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56778877765 55677777777654 6789999999988877766665444444677777765421 111 1
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|.-..
T Consensus 84 g~iD~lvnnAg~~ 96 (280)
T 3tox_A 84 GGLDTAFNNAGAL 96 (280)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 5799999987543
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=87.62 E-value=6.4 Score=34.83 Aligned_cols=131 Identities=12% Similarity=0.137 Sum_probs=65.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH---HcCC--------cceE-EEcchhhchhhh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE---AHNV--------HADL-INTDIASGLEKR 111 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~---~~~~--------~~~~-~~~d~~~~~~~~ 111 (256)
.+|.=+|+| .++..++..+.+.+++..|+++|.+++.++..++... ..++ ...+ ...|..+..
T Consensus 10 mkI~VIG~G--~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~--- 84 (481)
T 2o3j_A 10 SKVVCVGAG--YVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAI--- 84 (481)
T ss_dssp CEEEEECCS--TTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHH---
T ss_pred CEEEEECCC--HHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHh---
Confidence 467777765 4444455555544556789999999998876543100 0000 0011 112222211
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE-EeCCCCHHHHHHHHHH-c
Q 025207 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV-TLTANDPSQICLQMME-K 189 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~-~ 189 (256)
...|+|+..-|-....+...... .........+++.+.+.|++|.+++.. +......+.+.+.+.+ .
T Consensus 85 --~~aDvvii~Vptp~~~~g~~~~~---------~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~ 153 (481)
T 2o3j_A 85 --AEADLIFISVNTPTKMYGRGKGM---------APDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQ 153 (481)
T ss_dssp --HHCSEEEECCCCCBCCSSTTTTT---------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHT
T ss_pred --hcCCEEEEecCCccccccccccC---------CCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhh
Confidence 24699988644211100000000 011223566778888889887766642 2222334556677766 4
Q ss_pred C
Q 025207 190 G 190 (256)
Q Consensus 190 g 190 (256)
+
T Consensus 154 ~ 154 (481)
T 2o3j_A 154 K 154 (481)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=87.60 E-value=0.78 Score=40.96 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=57.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+++|+=+|+ |.++..+++.+... +++|+++|.++...+.+++ .|.. + .++.+.. ...|+|+
T Consensus 272 l~GktV~IiG~--G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~----~Ga~--~--~~l~e~l-----~~aDvVi 334 (494)
T 3ce6_A 272 IGGKKVLICGY--GDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMM----EGFD--V--VTVEEAI-----GDADIVV 334 (494)
T ss_dssp CTTCEEEEECC--SHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCE--E--CCHHHHG-----GGCSEEE
T ss_pred CCcCEEEEEcc--CHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCE--E--ecHHHHH-----hCCCEEE
Confidence 47899999987 66777777766533 5699999999987766543 3432 2 2333321 3689999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHH-HHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKIL-PSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~ 174 (256)
...+-. .++ ....+.+|+||+++.+..
T Consensus 335 ~atgt~---------------------------~~i~~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 335 TATGNK---------------------------DIIMLEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp ECSSSS---------------------------CSBCHHHHHHSCTTCEEEECSS
T ss_pred ECCCCH---------------------------HHHHHHHHHhcCCCcEEEEeCC
Confidence 853210 011 234567899999987543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.57 E-value=5.8 Score=32.11 Aligned_cols=79 Identities=22% Similarity=0.284 Sum_probs=52.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+|.+++..+.+.+.+ +....++..|+.+... ... -
T Consensus 28 ~gk~vlVTGas-~gIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (277)
T 3gvc_A 28 AGKVAIVTGAG-AGIGLAVARRLADE--GCHVLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAMVDACVAAF 101 (277)
T ss_dssp TTCEEEETTTT-STHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHc---CCcceEEEecCCCHHHHHHHHHHHHHHc
Confidence 56788877865 45566677776654 679999999988776655443 4444777888766421 110 1
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|.-..
T Consensus 102 g~iD~lvnnAg~~ 114 (277)
T 3gvc_A 102 GGVDKLVANAGVV 114 (277)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 5799999987554
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=87.48 E-value=4.5 Score=27.42 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=48.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~I 119 (256)
..++|+=+|+ |.++..++..+.+.+ ..+|+++|.++...+.+. . ....+...|+.+.. ... -..+|+|
T Consensus 4 ~~~~v~I~G~--G~iG~~~~~~l~~~g-~~~v~~~~r~~~~~~~~~----~--~~~~~~~~d~~~~~~~~~~-~~~~d~v 73 (118)
T 3ic5_A 4 MRWNICVVGA--GKIGQMIAALLKTSS-NYSVTVADHDLAALAVLN----R--MGVATKQVDAKDEAGLAKA-LGGFDAV 73 (118)
T ss_dssp TCEEEEEECC--SHHHHHHHHHHHHCS-SEEEEEEESCHHHHHHHH----T--TTCEEEECCTTCHHHHHHH-TTTCSEE
T ss_pred CcCeEEEECC--CHHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHH----h--CCCcEEEecCCCHHHHHHH-HcCCCEE
Confidence 3568888888 777777787776542 268999999988776544 1 12256666665431 121 2468999
Q ss_pred EECCCC
Q 025207 120 VVNPPY 125 (256)
Q Consensus 120 i~npP~ 125 (256)
+...|+
T Consensus 74 i~~~~~ 79 (118)
T 3ic5_A 74 ISAAPF 79 (118)
T ss_dssp EECSCG
T ss_pred EECCCc
Confidence 987664
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.34 E-value=5.8 Score=27.77 Aligned_cols=72 Identities=21% Similarity=0.166 Sum_probs=45.1
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
.+|+=+|+ |.++..++..+.+. +..|+++|.+++.++.+.+. .+ ..++.+|..+.. ....-..+|+|+.
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~---~~--~~~~~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAE---ID--ALVINGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH---CS--SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CEEEEECC--CHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHh---cC--cEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence 56777765 77777788877643 46899999998876654432 12 245666654321 1111246899998
Q ss_pred CCC
Q 025207 122 NPP 124 (256)
Q Consensus 122 npP 124 (256)
..|
T Consensus 76 ~~~ 78 (140)
T 1lss_A 76 VTG 78 (140)
T ss_dssp CCS
T ss_pred eeC
Confidence 654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.33 E-value=1.4 Score=37.48 Aligned_cols=94 Identities=14% Similarity=0.069 Sum_probs=54.9
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~ 115 (256)
+++.+||=.|+ |.|..++.+++. .+++|++++ +++..+.++ ..|.+ .++.. ++.+.... ...
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~-----~Ga~Vi~~~-~~~~~~~~~----~lGa~-~v~~~~~~~~~~~~~~--~~g 248 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKA-----WDAHVTAVC-SQDASELVR----KLGAD-DVIDYKSGSVEEQLKS--LKP 248 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEE-CGGGHHHHH----HTTCS-EEEETTSSCHHHHHHT--SCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHh-----CCCEEEEEe-ChHHHHHHH----HcCCC-EEEECCchHHHHHHhh--cCC
Confidence 57889999983 345555555554 256899998 666555553 34543 22221 22222111 246
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-+-. + ....+....+.|+++|+++.+.
T Consensus 249 ~D~vid~~g--------------------~------~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 249 FDFILDNVG--------------------G------STETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp BSEEEESSC--------------------T------THHHHGGGGBCSSSCCEEEESC
T ss_pred CCEEEECCC--------------------C------hhhhhHHHHHhhcCCcEEEEeC
Confidence 999987422 0 0123566778899999998753
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=87.08 E-value=5.7 Score=32.19 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=53.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-HHHHHHHHHHH-HcCCcceEEEcchhh----ch--hhhc-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-YAVEVTRKTLE-AHNVHADLINTDIAS----GL--EKRL- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~-~~i~~a~~~~~-~~~~~~~~~~~d~~~----~~--~~~~- 112 (256)
.++++|=.|++ |.++.++++.|.++ +++|+.++.++ +..+.+.+.+. ..+....++..|+.+ .. ....
T Consensus 22 ~~k~~lVTGas-~gIG~aia~~L~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~ 98 (288)
T 2x9g_A 22 EAPAAVVTGAA-KRIGRAIAVKLHQT--GYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIIN 98 (288)
T ss_dssp CCCEEEETTCS-SHHHHHHHHHHHHH--TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHH
Confidence 45778877754 56677777777654 56899999887 66665555554 334444677788776 21 1111
Q ss_pred -----CCCccEEEECCCCC
Q 025207 113 -----AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 -----~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 99 ~~~~~~g~iD~lvnnAG~~ 117 (288)
T 2x9g_A 99 SCFRAFGRCDVLVNNASAF 117 (288)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHhcCCCCEEEECCCCC
Confidence 15799999987543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=87.08 E-value=3.3 Score=35.52 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=69.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
-+.+||.++-+.|.++..+ .++.+++.+.-+--.... +..+|+.... .+-.+ ..+..||+|+.
T Consensus 45 ~~~~~l~~n~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~----l~~~~~~~~~--~~~~~----~~~~~~d~v~~ 107 (381)
T 3dmg_A 45 FGERALDLNPGVGWGSLPL-------EGRMAVERLETSRAAFRC----LTASGLQARL--ALPWE----AAAGAYDLVVL 107 (381)
T ss_dssp CSSEEEESSCTTSTTTGGG-------BTTBEEEEEECBHHHHHH----HHHTTCCCEE--CCGGG----SCTTCEEEEEE
T ss_pred hCCcEEEecCCCCcccccc-------CCCCceEEEeCcHHHHHH----HHHcCCCccc--cCCcc----CCcCCCCEEEE
Confidence 4478999999999753222 124577777655444333 5667776422 11111 12468999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
-.|=. ++.......+.++...|++||.+++........+.+...+..
T Consensus 108 ~~Pk~--------------------k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g~~~~~~~~~~ 154 (381)
T 3dmg_A 108 ALPAG--------------------RGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEARA 154 (381)
T ss_dssp ECCGG--------------------GCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGTHHHHHHHHHH
T ss_pred ECCcc--------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEccHHHHHHHHHHHHh
Confidence 66510 122335677888999999999999977666556666666653
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=87.07 E-value=3.9 Score=32.75 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=51.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++.++...+...+.+...+ ...++..|+.+... ... -
T Consensus 15 ~~k~vlITGa-sggiG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 15 QDKVAIITGG-AGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGSPD-VISFVHCDVTKDEDVRNLVDTTIAKH 90 (278)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCTT-TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEcCChhHHHHHHHHhCCCC-ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678887775 677788888877654 5789999998876554433331111 33777888765421 111 1
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|++|.|.-.
T Consensus 91 ~~id~li~~Ag~ 102 (278)
T 2bgk_A 91 GKLDIMFGNVGV 102 (278)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 478999987654
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=87.07 E-value=4.4 Score=33.70 Aligned_cols=93 Identities=19% Similarity=0.125 Sum_probs=57.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh-chhhhcCCCccEEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS-GLEKRLAGLVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~fD~Ii~ 121 (256)
..+|.=||+ |.++..++..+.+.+....|+++|.+++.++.+.+ .|... -...|..+ .. ...|+|+.
T Consensus 33 ~~kI~IIG~--G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~-~~~~~~~~~~~-----~~aDvVil 100 (314)
T 3ggo_A 33 MQNVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID-EGTTSIAKVED-----FSPDFVML 100 (314)
T ss_dssp CSEEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS-EEESCTTGGGG-----GCCSEEEE
T ss_pred CCEEEEEee--CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc-hhcCCHHHHhh-----ccCCEEEE
Confidence 367877875 55666666666544332389999999988776653 33321 12233333 21 35799987
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.-|- .....+++++...|+++.+++-
T Consensus 101 avp~------------------------~~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 101 SSPV------------------------RTFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp CSCG------------------------GGHHHHHHHHHHHSCTTCEEEE
T ss_pred eCCH------------------------HHHHHHHHHHhhccCCCcEEEE
Confidence 5441 1145677888888999876654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.04 E-value=3.8 Score=32.55 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=53.7
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------CCC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------AGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~~~ 115 (256)
++||=.|+ +|.++.++++.+.++ +++|++++.+++..+...+.+...+....++..|+.+... ... -++
T Consensus 3 k~vlVTGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 3 KVALVTGA-GQGIGKAIALRLVKD--GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECC-CChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 56776674 566777788877654 5789999999887776666655444444677788765421 111 147
Q ss_pred ccEEEECCCCC
Q 025207 116 VDVMVVNPPYV 126 (256)
Q Consensus 116 fD~Ii~npP~~ 126 (256)
+|++|.|.-..
T Consensus 80 id~lv~nAg~~ 90 (256)
T 1geg_A 80 FDVIVNNAGVA 90 (256)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 99999987543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.97 E-value=12 Score=30.86 Aligned_cols=92 Identities=17% Similarity=0.093 Sum_probs=54.3
Q ss_pred CCCCEEEEec-cc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVG-CG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlG-cG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+||=.| +| .|..++.+++. .+++|++++ +++..+.+++ .|.+ .++..+-.+.... .-..+|+
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~-----~Ga~vi~~~-~~~~~~~~~~----lGa~-~~i~~~~~~~~~~-~~~g~D~ 218 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQ-----KGTTVITTA-SKRNHAFLKA----LGAE-QCINYHEEDFLLA-ISTPVDA 218 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEE-CHHHHHHHHH----HTCS-EEEETTTSCHHHH-CCSCEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHH-----cCCEEEEEe-ccchHHHHHH----cCCC-EEEeCCCcchhhh-hccCCCE
Confidence 6789999886 33 45666555554 256899987 4544555543 4543 2332221110111 1146999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
|+-.-. -.. +..+.++|+++|+++.+
T Consensus 219 v~d~~g---------------------------~~~-~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 219 VIDLVG---------------------------GDV-GIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEESSC---------------------------HHH-HHHHGGGEEEEEEEEEC
T ss_pred EEECCC---------------------------cHH-HHHHHHhccCCCEEEEe
Confidence 987421 122 37788999999999975
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=86.78 E-value=6.8 Score=31.83 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=64.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---------CCcc--------e-EEEcchh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---------NVHA--------D-LINTDIA 105 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---------~~~~--------~-~~~~d~~ 105 (256)
++|.=+|+ |.++..++..+.+. +.+|+..|.+++.++.+.+.+... ++.. . ....|..
T Consensus 5 ~kV~VIGa--G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
T 4e12_A 5 TNVTVLGT--GVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLA 80 (283)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHH
T ss_pred CEEEEECC--CHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHH
Confidence 45666665 55666677766543 568999999999988887764321 1110 0 1122332
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHH
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQ 185 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 185 (256)
+. -...|+|+..-|- ..+....++.++...++++.+++-.+... ...++...
T Consensus 81 ~~-----~~~aDlVi~av~~----------------------~~~~~~~v~~~l~~~~~~~~il~s~tS~~-~~~~la~~ 132 (283)
T 4e12_A 81 QA-----VKDADLVIEAVPE----------------------SLDLKRDIYTKLGELAPAKTIFATNSSTL-LPSDLVGY 132 (283)
T ss_dssp HH-----TTTCSEEEECCCS----------------------CHHHHHHHHHHHHHHSCTTCEEEECCSSS-CHHHHHHH
T ss_pred HH-----hccCCEEEEeccC----------------------cHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHHHHHhh
Confidence 22 1467999986541 12345677888888899888765433322 34444444
Q ss_pred H
Q 025207 186 M 186 (256)
Q Consensus 186 ~ 186 (256)
+
T Consensus 133 ~ 133 (283)
T 4e12_A 133 T 133 (283)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.73 E-value=5.6 Score=32.15 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=50.7
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
.+++||=.|+++ |.++.++++.+.++ +++|++++.++..-+.+.+.....+ ...++..|+.+... .. .
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHRE--GAQLAFTYATPKLEKRVREIAKGFG-SDLVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467888888763 67788888887654 6789999988752222222212222 13677778765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 97 ~g~iD~lv~~Ag~~ 110 (285)
T 2p91_A 97 WGSLDIIVHSIAYA 110 (285)
T ss_dssp TSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 25789999987543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=86.65 E-value=2.5 Score=34.21 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
-.++++|=.|+ +|.++.++++.+.++ +++|+.++.+++..+.+.+.+...+....++..|+.+... .. .
T Consensus 24 l~gk~~lVTGa-s~gIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (271)
T 4ibo_A 24 LGGRTALVTGS-SRGLGRAMAEGLAVA--GARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQ 100 (271)
T ss_dssp CTTCEEEETTC-SSHHHHHHHHHHHHT--TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35788888884 556677788877654 6799999999988887777776666555777778765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 101 ~g~iD~lv~nAg~~ 114 (271)
T 4ibo_A 101 GIDVDILVNNAGIQ 114 (271)
T ss_dssp TCCCCEEEECCCCC
T ss_pred CCCCCEEEECCCCC
Confidence 25799999987544
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.54 E-value=3.3 Score=33.66 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=56.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhc-hh--hhc-----
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASG-LE--KRL----- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~-~~--~~~----- 112 (256)
.+++||=.|++ |.++.++++.|.++ +++|++++.++...+.+.+.+...+- ...++..|+.+. .. .+.
T Consensus 11 ~~k~vlITGas-~GIG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 11 KRRCAVVTGGN-KGIGFEICKQLSSN--GIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp -CCEEEESSCS-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCC-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 46778877755 56777788877654 67999999999887777666654432 347888888775 21 111
Q ss_pred -CCCccEEEECCCCC
Q 025207 113 -AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 -~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 88 ~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 88 HFGKLDILVNNAGVA 102 (311)
T ss_dssp HHSSCCEEEECCCCC
T ss_pred hCCCCCEEEECCccc
Confidence 15799999987654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=86.44 E-value=4.2 Score=32.51 Aligned_cols=82 Identities=13% Similarity=0.046 Sum_probs=49.5
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025207 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
.+++||=.|+++ |.++.++++.+.++ +++|+.++.++...+.+++.....+. ..++..|+.+... .. .
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~l~~~~~~-~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLGS-DIVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTTTHHHHHHHHHHTTC-CCEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEEcCcHHHHHHHHHHHHhcCC-cEEEEccCCCHHHHHHHHHHHHHH
Confidence 457888888753 77788888887754 57899999877221222221122221 2577778765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 85 ~g~iD~lv~~Ag~~ 98 (265)
T 1qsg_A 85 WPKFDGFVHSIGFA 98 (265)
T ss_dssp CSSEEEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 24789999987543
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.34 E-value=3.2 Score=33.82 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=55.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-----cCCcceEEEcchhhchh--hhcC-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-----HNVHADLINTDIASGLE--KRLA- 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-----~~~~~~~~~~d~~~~~~--~~~~- 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++.++...+.+.+.+.. .+....++.+|+.+... ...+
T Consensus 17 ~~k~vlVTGa-sggIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 93 (303)
T 1yxm_A 17 QGQVAIVTGG-ATGIGKAIVKELLEL--GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 93 (303)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence 4578888884 677788888887654 56899999998877766666654 23334778888765421 1111
Q ss_pred -----CCccEEEECCCC
Q 025207 114 -----GLVDVMVVNPPY 125 (256)
Q Consensus 114 -----~~fD~Ii~npP~ 125 (256)
+++|++|.|.-.
T Consensus 94 ~~~~~g~id~li~~Ag~ 110 (303)
T 1yxm_A 94 TLDTFGKINFLVNNGGG 110 (303)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCCCEEEECCCC
Confidence 469999998653
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=86.29 E-value=6.5 Score=34.59 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=65.1
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH------------HHHcCCcceE-EEcchhhchhh
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT------------LEAHNVHADL-INTDIASGLEK 110 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~------------~~~~~~~~~~-~~~d~~~~~~~ 110 (256)
.+|.=+|+ |.++..++..+.+.+++.+|+++|.+++.++..++. +... ....+ ...|..+..
T Consensus 6 mkI~VIG~--G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~-~~~~~~~t~~~~e~~-- 80 (467)
T 2q3e_A 6 KKICCIGA--GYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESC-RGKNLFFSTNIDDAI-- 80 (467)
T ss_dssp CEEEEECC--STTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH-BTTTEEEESCHHHHH--
T ss_pred cEEEEECC--CHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHh-hcCCEEEECCHHHHH--
Confidence 45666765 445555666655444467899999999887764321 1110 00011 122322221
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE-eCCCCHHHHHHHHHHc
Q 025207 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT-LTANDPSQICLQMMEK 189 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~~ 189 (256)
...|+|+..-|-...... ...+............+.+.+.|++|.+++..+ ......+.+.+.+.+.
T Consensus 81 ---~~aDvViiaVptp~~~~~---------v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~ 148 (467)
T 2q3e_A 81 ---KEADLVFISVNTPTKTYG---------MGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDAN 148 (467)
T ss_dssp ---HHCSEEEECCCCCBCCSS---------TTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHT
T ss_pred ---hcCCEEEEEcCCchhhcc---------ccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHh
Confidence 246999886542111000 000001122335667777888888876655421 1222344566667665
Q ss_pred C
Q 025207 190 G 190 (256)
Q Consensus 190 g 190 (256)
+
T Consensus 149 ~ 149 (467)
T 2q3e_A 149 T 149 (467)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28 | Back alignment and structure |
|---|
Probab=86.03 E-value=6 Score=32.43 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCcceEE--EcchhhchhhhcCCCccEEEECCCCCCCCCccc--ccccchhhhcCCCCcHHHHHHH
Q 025207 80 PYAVEVTRKTLEAHNVHADLI--NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV--GREGIASAWAGGENGRAVIDKI 155 (256)
Q Consensus 80 ~~~i~~a~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
++.+..+.+.++ ...+. +.|+.+.+... ..=|+|+++|||...+.... .+. ....+.+....+
T Consensus 156 ~~~l~~~~~~l~----~v~i~~~~~Df~~~i~~~--~~~~fvY~DPPY~~~~~~~~f~~Y~-------~~~f~~~dh~~L 222 (284)
T 2dpm_A 156 EELISAISVYIN----NNQLEIKVGDFEKAIVDV--RTGDFVYFDPPYIPLSETSAFTSYT-------HEGFSFADQVRL 222 (284)
T ss_dssp HHHHHHHHHHHH----HSEEEEEESCGGGGGTTC--CTTCEEEECCCCCCC-----CCCCC-------CSSCCHHHHHHH
T ss_pred HHHHHHHHHHhC----CCEEEEeCCCHHHHHHhc--CCCCEEEeCCCcccccCCCCccccc-------cCCCCHHHHHHH
Confidence 444555555443 23666 99999887654 33489999999987443211 110 011233445566
Q ss_pred HHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025207 156 LPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 156 l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
.+.+.++=+.||.++++... ...+.+++. +|...
T Consensus 223 ~~~l~~l~~~g~~~~lS~~d---~~~i~~ly~--~~~i~ 256 (284)
T 2dpm_A 223 RDAFKRLSDTGAYVMLSNSS---SALVEELYK--DFNIH 256 (284)
T ss_dssp HHHHHHHHTTTCEEEEEEES---CHHHHHHTT--TSEEE
T ss_pred HHHHHHHHhcCCEEEEEcCC---CHHHHHHHc--CCeEE
Confidence 66665544567877775432 245555553 45443
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=85.88 E-value=2.8 Score=33.98 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=57.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh-----cCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR-----LAG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~-----~~~ 114 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.+|.+++..+.+.+.+...+....++..|+.+... .. ..+
T Consensus 32 ~gk~~lVTGas-~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g 108 (275)
T 4imr_A 32 RGRTALVTGSS-RGIGAAIAEGLAGA--GAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIA 108 (275)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHT--TCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 56888877754 56677778877654 6799999999887777777766656555778888765421 00 015
Q ss_pred CccEEEECCCCC
Q 025207 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
++|++|.|.-..
T Consensus 109 ~iD~lvnnAg~~ 120 (275)
T 4imr_A 109 PVDILVINASAQ 120 (275)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 799999987543
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=85.87 E-value=3.7 Score=32.75 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=55.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------- 112 (256)
.+++||=.|+ +|.++.++++.|.++ +++|++++.++...+...+.+...+....++..|+.+... ...
T Consensus 13 ~~k~vlITGa-sggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (266)
T 1xq1_A 13 KAKTVLVTGG-TKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF 89 (266)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4577887775 666788888877654 5689999999887776666665545445677788765421 111
Q ss_pred CCCccEEEECCCC
Q 025207 113 AGLVDVMVVNPPY 125 (256)
Q Consensus 113 ~~~fD~Ii~npP~ 125 (256)
.+.+|++|.|.-.
T Consensus 90 ~~~id~li~~Ag~ 102 (266)
T 1xq1_A 90 GGKLDILINNLGA 102 (266)
T ss_dssp TTCCSEEEEECCC
T ss_pred CCCCcEEEECCCC
Confidence 1578999987644
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=85.66 E-value=12 Score=29.77 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=56.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCC-cceEEEcchhhchh--hh------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNV-HADLINTDIASGLE--KR------ 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~-~~~~~~~d~~~~~~--~~------ 111 (256)
.++++|=.|++. .++.++++.+.++ +++|+.++.+++..+.+.+.+.. .+- ...++..|+.+... ..
T Consensus 7 ~~k~~lVTGas~-GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (265)
T 3lf2_A 7 SEAVAVVTGGSS-GIGLATVELLLEA--GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACER 83 (265)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567888888654 4677777777654 67899999999888777776655 332 24677788765421 10
Q ss_pred cCCCccEEEECCCCC
Q 025207 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
.-+++|++|.|.-+.
T Consensus 84 ~~g~id~lvnnAg~~ 98 (265)
T 3lf2_A 84 TLGCASILVNNAGQG 98 (265)
T ss_dssp HHCSCSEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 015789999987654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=85.58 E-value=11 Score=30.04 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=56.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCCcceEEEcchhhchh--hhc------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++.+++..+.+.+.+.. .+....++..|+.+... ...
T Consensus 19 ~~k~vlVTGas-~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 95 (266)
T 4egf_A 19 DGKRALITGAT-KGIGADIARAFAAA--GARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEA 95 (266)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 56788877765 55677777777654 67899999999888777666654 45555788888876531 111
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 96 ~g~id~lv~nAg~~ 109 (266)
T 4egf_A 96 FGGLDVLVNNAGIS 109 (266)
T ss_dssp HTSCSEEEEECCCC
T ss_pred cCCCCEEEECCCcC
Confidence 15799999987554
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.55 E-value=3.9 Score=32.34 Aligned_cols=81 Identities=23% Similarity=0.249 Sum_probs=58.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.+|.+++..+.+.+.+...+....++..|+.+... ... -
T Consensus 8 ~~k~vlITGa-s~giG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 8 ENKVGIVTGS-GGGIGQAYAEALARE--GAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5678888885 456677788877654 5789999999998888777776665555788888876421 111 1
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|++|.|.-.
T Consensus 85 g~id~li~~Ag~ 96 (253)
T 3qiv_A 85 GGIDYLVNNAAI 96 (253)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 479999998754
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=85.54 E-value=4.5 Score=34.31 Aligned_cols=74 Identities=20% Similarity=0.129 Sum_probs=44.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++++|+=+|+ |..+..+++.+... +++|+++|.+++..+.+++.... .......+..+..... ..+|+||.
T Consensus 166 ~~~~VlViGa--GgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~DvVI~ 236 (361)
T 1pjc_A 166 KPGKVVILGG--GVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS---RVELLYSNSAEIETAV--AEADLLIG 236 (361)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG---GSEEEECCHHHHHHHH--HTCSEEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhCc---eeEeeeCCHHHHHHHH--cCCCEEEE
Confidence 4589999998 55555566655433 45999999999888777654321 1112222211111111 26899987
Q ss_pred CCC
Q 025207 122 NPP 124 (256)
Q Consensus 122 npP 124 (256)
..+
T Consensus 237 ~~~ 239 (361)
T 1pjc_A 237 AVL 239 (361)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=85.38 E-value=0.48 Score=40.66 Aligned_cols=75 Identities=7% Similarity=0.054 Sum_probs=45.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhc-CCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~-~~~f 116 (256)
+++.+||=+|.|+|.++..+.+.+... +++|++++.+++..+.+++ .|.+ .++.. |+.+...... ...+
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~-~~~~~~~~~~~~~v~~~t~~~g~ 241 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAV-HVCNAASPTFMQDLTEALVSTGA 241 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCS-CEEETTSTTHHHHHHHHHHHHCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCc-EEEeCCChHHHHHHHHHhcCCCc
Confidence 477889988767666665555544432 5689999999998887764 4443 23322 2222222211 1369
Q ss_pred cEEEEC
Q 025207 117 DVMVVN 122 (256)
Q Consensus 117 D~Ii~n 122 (256)
|+|+-.
T Consensus 242 d~v~d~ 247 (379)
T 3iup_A 242 TIAFDA 247 (379)
T ss_dssp CEEEES
T ss_pred eEEEEC
Confidence 999874
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.30 E-value=6.2 Score=31.70 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=52.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.+|.+++..+.+.+.+ +....++..|+.+... ... -
T Consensus 10 ~~k~vlVTGas-~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (271)
T 3tzq_B 10 ENKVAIITGAC-GGIGLETSRVLARA--GARVVLADLPETDLAGAAASV---GRGAVHHVVDLTNEVSVRALIDFTIDTF 83 (271)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEECTTSCHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHh---CCCeEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56788877855 55677777777654 578999999887665554433 4444677788765421 111 1
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|.-..
T Consensus 84 g~id~lv~nAg~~ 96 (271)
T 3tzq_B 84 GRLDIVDNNAAHS 96 (271)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4799999987654
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=85.29 E-value=5.7 Score=32.34 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=44.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEe-CCHHHHHHHHHHHH-HcCCcceEEEcchhhc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATD-INPYAVEVTRKTLE-AHNVHADLINTDIASG 107 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD-~~~~~i~~a~~~~~-~~~~~~~~~~~d~~~~ 107 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.++ .+++..+.+.+.+. ..+....++..|+.+.
T Consensus 8 ~~k~~lVTGas-~GIG~aia~~la~~--G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~ 72 (291)
T 1e7w_A 8 TVPVALVTGAA-KRLGRSIAEGLHAE--GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNV 72 (291)
T ss_dssp CCCEEEETTCS-SHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSS
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCc
Confidence 45778777755 55777788877654 57899999 99887776666654 3444446777777654
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=85.23 E-value=7.2 Score=30.49 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=46.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~I 119 (256)
...+|+=+|+ |.++..+++.|.+. +. |+++|.+++.++.++ .+ ..++.+|..+.. ....-...|.|
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~--g~-v~vid~~~~~~~~~~-----~~--~~~i~gd~~~~~~l~~a~i~~ad~v 75 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGS--EV-FVLAEDENVRKKVLR-----SG--ANFVHGDPTRVSDLEKANVRGARAV 75 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTS--EE-EEEESCGGGHHHHHH-----TT--CEEEESCTTCHHHHHHTTCTTCSEE
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhC--Ce-EEEEECCHHHHHHHh-----cC--CeEEEcCCCCHHHHHhcCcchhcEE
Confidence 3467877776 68888888887643 56 999999998776543 22 378888876542 12223578999
Q ss_pred EECC
Q 025207 120 VVNP 123 (256)
Q Consensus 120 i~np 123 (256)
++..
T Consensus 76 i~~~ 79 (234)
T 2aef_A 76 IVDL 79 (234)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8853
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=85.12 E-value=6.5 Score=31.91 Aligned_cols=82 Identities=12% Similarity=0.151 Sum_probs=55.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCcceEEEcchhhchh--hh------c
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~~~~~~~d~~~~~~--~~------~ 112 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++.++...+...+.+... +....++.+|+.+... .. .
T Consensus 25 ~~k~vlITGa-sggiG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 101 (302)
T 1w6u_A 25 QGKVAFITGG-GTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV 101 (302)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4577887774 567777788877654 578999999988776665555433 4445778888765421 10 1
Q ss_pred CCCccEEEECCCCC
Q 025207 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 102 ~g~id~li~~Ag~~ 115 (302)
T 1w6u_A 102 AGHPNIVINNAAGN 115 (302)
T ss_dssp TCSCSEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 25789999987543
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=84.94 E-value=6 Score=31.17 Aligned_cols=127 Identities=13% Similarity=0.024 Sum_probs=69.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh-------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------- 111 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+ ..+++..+...+.+...+....++..|+.+... ..
T Consensus 6 ~~k~vlITGas-~gIG~~~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (255)
T 3icc_A 6 KGKVALVTGAS-RGIGRAIAKRLAND--GALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNE 82 (255)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHT--TCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHH
Confidence 46788877766 44677778877654 5678775 555666666555565555444677777655421 00
Q ss_pred -----cCCCccEEEECCCCCCCCCccccccc-chhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 112 -----LAGLVDVMVVNPPYVPTPEDEVGREG-IASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 112 -----~~~~fD~Ii~npP~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
..+++|++|.|.-+......+....+ ....+.. ...-...+.+.+.+.++++|+++++..
T Consensus 83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~---N~~g~~~l~~~~~~~~~~~~~iv~isS 148 (255)
T 3icc_A 83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSV---NAKAPFFIIQQALSRLRDNSRIINISS 148 (255)
T ss_dssp HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHH---HTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhh---hchHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 01359999998765432221110000 0000000 000122345666777788888887653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=84.91 E-value=3.8 Score=32.74 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=58.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.++.+++..+...+.+...+....++..|+.+... ... -
T Consensus 28 ~~k~vlITGa-s~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 28 SGQVAVVTGA-SRGIGAAIARKLGSL--GARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp TTCEEEESST-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 5678888885 466777788877654 6789999999998888777776666555788888765421 111 1
Q ss_pred CCccEEEECCCC
Q 025207 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|.-.
T Consensus 105 g~id~lv~~Ag~ 116 (262)
T 3rkr_A 105 GRCDVLVNNAGV 116 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 579999998765
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=84.90 E-value=4.5 Score=29.45 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=45.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc--hhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG--LEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~fD~ 118 (256)
.++.+|+=+|+ |.++..+++.+.+. +..|+++|.+++.++.++. ..+ ..++.+|..+. +....-..+|+
T Consensus 17 ~~~~~v~IiG~--G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~~---~~g--~~~~~~d~~~~~~l~~~~~~~ad~ 87 (155)
T 2g1u_A 17 QKSKYIVIFGC--GRLGSLIANLASSS--GHSVVVVDKNEYAFHRLNS---EFS--GFTVVGDAAEFETLKECGMEKADM 87 (155)
T ss_dssp CCCCEEEEECC--SHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSCT---TCC--SEEEESCTTSHHHHHTTTGGGCSE
T ss_pred cCCCcEEEECC--CHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHh---cCC--CcEEEecCCCHHHHHHcCcccCCE
Confidence 46788998876 67777777777643 4689999999876654321 112 24565665332 11111146899
Q ss_pred EEECCC
Q 025207 119 MVVNPP 124 (256)
Q Consensus 119 Ii~npP 124 (256)
|+...+
T Consensus 88 Vi~~~~ 93 (155)
T 2g1u_A 88 VFAFTN 93 (155)
T ss_dssp EEECSS
T ss_pred EEEEeC
Confidence 988543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=84.75 E-value=10 Score=30.46 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=53.2
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCC-CccEEEECC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAG-LVDVMVVNP 123 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~fD~Ii~np 123 (256)
+|.=+| .|.++..++..+.+.+...+|+++|.+++.++.+++ .|.... ...|..+.. . ..|+|+..-
T Consensus 3 ~I~iIG--~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~~-~~~~~~~~~-----~~~aDvVilav 70 (281)
T 2g5c_A 3 NVLIVG--VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIIDE-GTTSIAKVE-----DFSPDFVMLSS 70 (281)
T ss_dssp EEEEES--CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCSE-EESCGGGGG-----GTCCSEEEECS
T ss_pred EEEEEe--cCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCCccc-ccCCHHHHh-----cCCCCEEEEcC
Confidence 455566 556666666666543322379999999988776542 343211 122332221 3 579998754
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|- .....++..+...++++.+++.
T Consensus 71 p~------------------------~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 71 PV------------------------RTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp CH------------------------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred CH------------------------HHHHHHHHHHHhhCCCCcEEEE
Confidence 41 1245667777778888876554
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=84.70 E-value=5.8 Score=33.34 Aligned_cols=94 Identities=11% Similarity=0.097 Sum_probs=50.8
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEE-EEeCCHH---HHHHHHHHHHHcCCcceEEEcch--hhchhhhc
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYI-ATDINPY---AVEVTRKTLEAHNVHADLINTDI--ASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~-giD~~~~---~i~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~ 112 (256)
+++.+||=.|+ |.|..++.+++.+ ++.++ .++.++. ..+.+ ...|.+ .++..+- .+......
T Consensus 166 ~~g~~VlV~Ga~G~vG~~aiqlak~~-----Ga~vi~~~~~~~~~~~~~~~~----~~lGa~-~vi~~~~~~~~~~~~~~ 235 (357)
T 1zsy_A 166 QPGDSVIQNASNSGVGQAVIQIAAAL-----GLRTINVVRDRPDIQKLSDRL----KSLGAE-HVITEEELRRPEMKNFF 235 (357)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-----TCEEEEEECCCSCHHHHHHHH----HHTTCS-EEEEHHHHHSGGGGGTT
T ss_pred CCCCEEEEeCCcCHHHHHHHHHHHHc-----CCEEEEEecCccchHHHHHHH----HhcCCc-EEEecCcchHHHHHHHH
Confidence 57899999996 4566777777653 34554 4444432 23333 334543 2332210 01111111
Q ss_pred C--CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 113 A--GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 113 ~--~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
. ..+|+|+-.-. -.. .....++|+++|+++++
T Consensus 236 ~~~~~~Dvvid~~g---------------------------~~~-~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 236 KDMPQPRLALNCVG---------------------------GKS-STELLRQLARGGTMVTY 269 (357)
T ss_dssp SSSCCCSEEEESSC---------------------------HHH-HHHHHTTSCTTCEEEEC
T ss_pred hCCCCceEEEECCC---------------------------cHH-HHHHHHhhCCCCEEEEE
Confidence 1 14899987411 112 23567899999999885
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.62 E-value=4.7 Score=32.39 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=57.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++.++...+...+.+...+....++..|+.+... .. .-
T Consensus 30 ~~k~vlITGa-sggIG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 30 TGEIVLITGA-GHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 5678887774 566788888887754 5789999999887777666665555455778888765421 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-..
T Consensus 107 g~iD~li~~Ag~~ 119 (272)
T 1yb1_A 107 GDVSILVNNAGVV 119 (272)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCcEEEECCCcC
Confidence 4799999987544
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=84.47 E-value=8.1 Score=31.26 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=53.2
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.+|.=+|+| .++..++..+.+.+++..|+++|.+++.++.+.+ .+... ....|..+.. ...|+|+..-
T Consensus 7 ~~I~iIG~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~-~~~~~~~~~~-----~~aDvVilav 74 (290)
T 3b1f_A 7 KTIYIAGLG--LIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD-EATADFKVFA-----ALADVIILAV 74 (290)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS-EEESCTTTTG-----GGCSEEEECS
T ss_pred ceEEEEeeC--HHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc-cccCCHHHhh-----cCCCEEEEcC
Confidence 456667654 5555556655443445689999999987776543 23211 1222332221 3579998854
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhc-cccCeEEE
Q 025207 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKL-LSKRGWLY 170 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-LkpgG~l~ 170 (256)
|- .....++..+... |+++.+++
T Consensus 75 p~------------------------~~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 75 PI------------------------KKTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp CH------------------------HHHHHHHHHHHTSCCCTTCEEE
T ss_pred CH------------------------HHHHHHHHHHHhcCCCCCCEEE
Confidence 41 1245677777777 88876555
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.18 E-value=6.5 Score=31.78 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=55.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++.++...+.+.+.+...+....++..|+.+... ... -
T Consensus 43 ~~k~vlITGa-sggIG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 119 (285)
T 2c07_A 43 ENKVALVTGA-GRGIGREIAKMLAKS--VSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 119 (285)
T ss_dssp SSCEEEEEST-TSHHHHHHHHHHTTT--SSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence 4577887775 577788888888754 5789999988877766666555444445677788765421 111 2
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-..
T Consensus 120 ~~id~li~~Ag~~ 132 (285)
T 2c07_A 120 KNVDILVNNAGIT 132 (285)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 5789999987543
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=84.14 E-value=6.1 Score=31.40 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=53.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh--hhcC----
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE--KRLA---- 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~--~~~~---- 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++.+++..+.+.+.+... +....++..|+.+... ...+
T Consensus 6 ~~k~vlVTGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 6 QGKLAVVTAG-SSGLGFASALELARN--GARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4577887775 466777788877654 578999999988776665555432 2234677788765421 1111
Q ss_pred --CCccEEEECCCCC
Q 025207 114 --GLVDVMVVNPPYV 126 (256)
Q Consensus 114 --~~fD~Ii~npP~~ 126 (256)
+ +|++|.|.-..
T Consensus 83 ~~g-id~lv~~Ag~~ 96 (260)
T 2z1n_A 83 LGG-ADILVYSTGGP 96 (260)
T ss_dssp TTC-CSEEEECCCCC
T ss_pred hcC-CCEEEECCCCC
Confidence 4 99999987643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 256 | ||||
| d2h00a1 | 250 | c.66.1.54 (A:5-254) Methyltransferase 10 domain co | 4e-09 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 8e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-04 | |
| d2b3ta1 | 274 | c.66.1.30 (A:2-275) N5-glutamine methyltransferase | 0.002 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 0.003 |
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 4e-09
Identities = 23/179 (12%), Positives = 56/179 (31%), Gaps = 27/179 (15%)
Query: 14 HPEVYEPCDDSFALVDALLAD---RINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG 70
E P + D + + +++G G+ + +LG + G
Sbjct: 30 PLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGAS----CIYPLLGATLNG 85
Query: 71 VQYIATDINPYAVEVTRKTLEAHNVHADLI------NTDIASGLEKRLAGLVDVMVVNPP 124
++AT+++ +K +E +N+ + T + L++ + D + NPP
Sbjct: 86 WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPP 145
Query: 125 YVPTPEDEVGREGIASAWA--------------GGENGRAVIDKILPSADKLLSKRGWL 169
+ + G + +I+ + +L + W
Sbjct: 146 FFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWY 204
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 8e-05
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-------- 97
+E G GSG + L+ +G + I+ ++ ++ +K +
Sbjct: 102 VLEAGSGSGGMSLFLSKAVG---SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 158
Query: 98 ----DLINTDIASGLEKRLAGLVDVMVVNPP 124
D I+ DI+ E + D + ++
Sbjct: 159 PDNVDFIHKDISGATEDIKSLTFDAVALDML 189
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
+EVG GSG + + + L + + ++ L
Sbjct: 89 ILEVGVGSGNMSSYILYALN---GKGTLTVVERDEDNLKKAMDNLSEFYDI 136
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Score = 36.8 bits (84), Expect = 0.002
Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 28/185 (15%)
Query: 36 INLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95
+ + P +++G G+G + +LA P + IA D P AV + ++ + +
Sbjct: 102 LARLPEQPCRILDLGTGTGAIALALASER----PDCEIIAVDRMPDAVSLAQRNAQHLAI 157
Query: 96 H-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGREGIASAWAGGENGRA 150
++ +D S L ++V NPPY+ + R +A ++G A
Sbjct: 158 KNIHILQSDWFSALAG---QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMA 214
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIK 210
I I+ + L G+L L E G+ V+++ H ++
Sbjct: 215 DIVHIIEQSRNALVSGGFLLL----------------EHGWQQGEAVRQAFILAGYHDVE 258
Query: 211 FWRDF 215
RD+
Sbjct: 259 TCRDY 263
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.1 bits (83), Expect = 0.003
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93
+E G GSG + SL +G P Q I+ + E R+ +
Sbjct: 100 VLEAGAGSGALTLSLLRAVG---PAGQVISYEQRADHAEHARRNVSGC 144
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.97 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.95 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.91 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.86 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.86 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.82 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.79 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.79 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.77 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.76 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.76 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.75 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.75 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.75 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.75 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.74 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.74 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.74 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.73 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.72 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.72 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.72 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.71 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.71 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.71 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.7 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.7 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.7 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.69 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.69 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.68 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.68 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.67 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.67 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.67 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.66 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.66 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.66 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.66 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.66 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.65 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.64 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.64 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.64 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.64 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.63 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.63 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.63 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.63 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.62 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.62 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.62 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.6 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.59 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.59 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.59 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.57 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.57 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 99.56 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.53 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.48 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.48 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.48 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.47 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 99.46 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.45 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.44 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.43 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.43 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.42 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.41 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.38 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.37 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.36 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.36 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.34 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.3 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.3 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 99.22 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.16 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.11 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 99.08 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.05 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.04 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 99.01 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.99 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.98 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.98 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.94 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.93 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.93 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.92 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.9 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.87 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.78 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.78 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.73 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.53 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.33 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.25 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.96 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.64 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.59 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.56 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.5 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.5 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.49 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 97.48 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.44 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 97.43 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.41 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.4 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.38 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.28 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.23 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.14 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.01 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.01 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.99 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.95 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.78 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.61 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.56 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.36 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.2 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.84 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.79 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.7 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.65 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.53 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.52 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.37 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.33 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.26 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 95.24 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.2 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.08 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.93 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 94.91 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.86 | |
| d2dpma_ | 275 | DNA methylase DpnM {Streptococcus pneumoniae [TaxI | 94.69 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.38 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.36 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.3 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.29 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.25 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.22 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 94.12 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 93.96 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.9 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.76 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.71 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 93.3 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.28 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.13 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.29 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 92.04 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 91.99 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.8 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 91.63 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 91.4 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 91.11 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 90.98 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 90.97 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.84 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 90.75 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.54 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 90.36 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.61 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 89.54 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.48 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.25 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 88.27 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 87.91 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 87.46 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.1 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 87.06 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 86.94 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.9 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 86.43 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 86.38 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 86.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 85.89 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 85.59 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 85.55 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 85.46 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 85.41 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 85.31 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 84.91 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 83.88 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 83.14 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 82.04 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 81.89 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 81.22 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 81.11 |
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=6.1e-31 Score=217.50 Aligned_cols=187 Identities=22% Similarity=0.323 Sum_probs=164.0
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.|+||+||++|+.++++++.... ..+.+|||+|||+|++++.++.. .|++.|+++|+|+.+++.|++|
T Consensus 80 ~~~v~~~VlIPRpeTE~lv~~~l~~~~----~~~~~vlDlGtGSG~I~i~la~~----~p~~~v~avDis~~Al~~A~~N 151 (274)
T d2b3ta1 80 PLFVSPATLIPRPDTECLVEQALARLP----EQPCRILDLGTGTGAIALALASE----RPDCEIIAVDRMPDAVSLAQRN 151 (274)
T ss_dssp EEECCTTSCCCCTTHHHHHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHH----CTTSEEEEECSSHHHHHHHHHH
T ss_pred EEEEeccccccccchhhhhhhHhhhhc----ccccceeeeehhhhHHHHHHHhh----CCcceeeeccchhHHHhHHHHH
Confidence 388999999999999999999888753 46789999999999999998887 7889999999999999999999
Q ss_pred HHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCC----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 90 LEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..++++. +++.+|+.+... ..+||+|++||||.+... .++...++..++.+|.+|...+..++..+.++|+
T Consensus 152 a~~~~~~~v~~~~~d~~~~~~---~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~ 228 (274)
T d2b3ta1 152 AQHLAIKNIHILQSDWFSALA---GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV 228 (274)
T ss_dssp HHHHTCCSEEEECCSTTGGGT---TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE
T ss_pred HHHhCcccceeeecccccccC---CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC
Confidence 99999864 999999887643 368999999999998765 2456788899999999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEE
Q 025207 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 208 (256)
|||.+++ ..+..+...+.+.+.+.||....+.....+..++.+
T Consensus 229 ~~G~l~l-Eig~~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~ 271 (274)
T d2b3ta1 229 SGGFLLL-EHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTL 271 (274)
T ss_dssp EEEEEEE-ECCSSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEE
T ss_pred CCCEEEE-EECchHHHHHHHHHHHCCCCeEEEEECCCCCceEEE
Confidence 9999999 456777889999999999987778888887777643
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=4.7e-27 Score=193.59 Aligned_cols=182 Identities=18% Similarity=0.249 Sum_probs=148.6
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.|.+.+++++||++|+.+++++++.+.. .+..+|+|+|||+|++++.+++. |+++|+++|+|+++++.|++|
T Consensus 81 ~f~v~~~vlIPRpeTE~lv~~~~~~~~~---~~~~~vld~g~GsG~i~~~la~~-----~~~~v~a~Dis~~Al~~A~~N 152 (271)
T d1nv8a_ 81 SFLVEEGVFVPRPETEELVELALELIRK---YGIKTVADIGTGSGAIGVSVAKF-----SDAIVFATDVSSKAVEIARKN 152 (271)
T ss_dssp EEECCTTSCCCCTTHHHHHHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHHH-----SSCEEEEEESCHHHHHHHHHH
T ss_pred EEEEecCccCchhhhhhhhhhhhhhhcc---ccccEEEEeeeeeehhhhhhhhc-----ccceeeechhhhhHHHHHHHH
Confidence 4789999999999999999999887643 35679999999999999887753 688999999999999999999
Q ss_pred HHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCc--ccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 90 LEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED--EVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 90 ~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
++.+++.. .++.+|+.+.... ..++||+|++||||...... .....+|..++.+|.+|+..+..++. ++|+|
T Consensus 153 a~~~~~~~~~~i~~~~~~~~~~~-~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~---~~L~~ 228 (271)
T d1nv8a_ 153 AERHGVSDRFFVRKGEFLEPFKE-KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFG---RYDTS 228 (271)
T ss_dssp HHHTTCTTSEEEEESSTTGGGGG-GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHH---HCCCT
T ss_pred HHHcCCCceeEEeeccccccccc-ccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHH---HhcCC
Confidence 99999866 6778888876543 24789999999999975432 33458899999999999998888764 68999
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEE
Q 025207 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHII 209 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~ 209 (256)
||++++ ..+..+.+.+.+++.+.|| +....+.+++.++
T Consensus 229 ~G~l~~-Eig~~Q~~~v~~l~~~~g~-----~kDl~g~~R~~~~ 266 (271)
T d1nv8a_ 229 GKIVLM-EIGEDQVEELKKIVSDTVF-----LKDSAGKYRFLLL 266 (271)
T ss_dssp TCEEEE-ECCTTCHHHHTTTSTTCEE-----EECTTSSEEEEEE
T ss_pred CCEEEE-EECHHHHHHHHHHHHhCCE-----EeccCCCcEEEEE
Confidence 999888 4567778888888877665 4566666665544
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.5e-23 Score=168.06 Aligned_cols=188 Identities=13% Similarity=0.167 Sum_probs=129.3
Q ss_pred cccceeeeccCCccccCCchHHHHHHHHHhh-ccc--ccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH
Q 025207 5 TAQIRLVSSHPEVYEPCDDSFALVDALLADR-INL--VEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~~~~l~~~l~~~~-~~~--~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~ 81 (256)
.+++ .+++.+++++||++++..+...++.+ ... ...+..+|||+|||+|++++.++.. .|+++++|+|++++
T Consensus 22 f~gl-~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~----~~~~~~~~~Di~~~ 96 (250)
T d2h00a1 22 DFGL-SIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGAT----LNGWYFLATEVDDM 96 (250)
T ss_dssp HHCC-CCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHH----HHCCEEEEEESCHH
T ss_pred HcCc-eEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHh----CCCccccceecCHH
Confidence 3455 48999999999999777665544443 221 1245679999999999999988887 56899999999999
Q ss_pred HHHHHHHHHHHcCCcc--eEEEcchhhch----hhhcCCCccEEEECCCCCCCCCccc-------ccccchhhhcCCCCc
Q 025207 82 AVEVTRKTLEAHNVHA--DLINTDIASGL----EKRLAGLVDVMVVNPPYVPTPEDEV-------GREGIASAWAGGENG 148 (256)
Q Consensus 82 ~i~~a~~~~~~~~~~~--~~~~~d~~~~~----~~~~~~~fD~Ii~npP~~~~~~~~~-------~~~~~~~~~~~~~~~ 148 (256)
+++.|++|++.|++.. .+...+..... ....+++||+|+|||||+....... ....+..+..++...
T Consensus 97 al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~e 176 (250)
T d2h00a1 97 CFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITE 176 (250)
T ss_dssp HHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTT
T ss_pred HHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccc
Confidence 9999999999999876 45554433322 2223568999999999997654221 222334444443322
Q ss_pred -------HHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 149 -------RAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 149 -------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
..++..++++...+++..|++.+.........++...+++.|+....+.
T Consensus 177 l~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~~g~~~i~~i 232 (250)
T d2h00a1 177 IMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYT 232 (250)
T ss_dssp THHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHcCCCeEEEE
Confidence 2467888999999999999987655556667889999999998654443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=1.1e-20 Score=154.36 Aligned_cols=137 Identities=16% Similarity=0.242 Sum_probs=113.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
|.++++++.... +++++|||+|||+|.+++.+++. +++|+|+|+|+.+++.|++|++.++++.+++++|
T Consensus 107 T~l~l~~l~~~~-----~~g~~VLDiGcGsG~l~i~aa~~------g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d 175 (254)
T d2nxca1 107 TRLALKALARHL-----RPGDKVLDLGTGSGVLAIAAEKL------GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS 175 (254)
T ss_dssp HHHHHHHHHHHC-----CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESC
T ss_pred hhHHHHHHHhhc-----CccCEEEEcccchhHHHHHHHhc------CCEEEEEECChHHHHHHHHHHHHcCCceeEEecc
Confidence 778888877664 58899999999999999887764 4589999999999999999999999988999999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
+.+..+ .++||+|++|.. ...+..++..+.++|||||+++++..-.....++.
T Consensus 176 ~~~~~~---~~~fD~V~ani~------------------------~~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~ 228 (254)
T d2nxca1 176 LEAALP---FGPFDLLVANLY------------------------AELHAALAPRYREALVPGGRALLTGILKDRAPLVR 228 (254)
T ss_dssp HHHHGG---GCCEEEEEEECC------------------------HHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHH
T ss_pred cccccc---ccccchhhhccc------------------------cccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHH
Confidence 876543 378999999843 23467888999999999999999765555678889
Q ss_pred HHHHHcCCcEEEEEe
Q 025207 184 LQMMEKGYAARIVVQ 198 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~ 198 (256)
+.+.+.||.......
T Consensus 229 ~~~~~~Gf~~~~~~~ 243 (254)
T d2nxca1 229 EAMAGAGFRPLEEAA 243 (254)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHCCCEEEEEEE
Confidence 999999998655443
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.86 E-value=8.6e-21 Score=149.46 Aligned_cols=144 Identities=19% Similarity=0.345 Sum_probs=108.3
Q ss_pred eeccCCccccCCc---hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 11 VSSHPEVYEPCDD---SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~~---~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+...+++|.+... ++++++ .+. ..++++|||+|||+|.+++.+++. . .+|+++|+|+.+++.|+
T Consensus 25 ~~t~~gvF~~~~~d~~t~lLi~----~l~---~~~~~~VLDiGcG~G~~~~~la~~----~--~~v~~iD~s~~~i~~a~ 91 (194)
T d1dusa_ 25 FKTDSGVFSYGKVDKGTKILVE----NVV---VDKDDDILDLGCGYGVIGIALADE----V--KSTTMADINRRAIKLAK 91 (194)
T ss_dssp EEEETTSTTTTSCCHHHHHHHH----HCC---CCTTCEEEEETCTTSHHHHHHGGG----S--SEEEEEESCHHHHHHHH
T ss_pred EEcCCCccCCCCcCHHHHHHHH----hCC---cCCCCeEEEEeecCChhHHHHHhh----c--cccceeeeccccchhHH
Confidence 5567888766432 444443 332 357899999999999998877764 3 38999999999999999
Q ss_pred HHHHHcCCcc---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 88 KTLEAHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 88 ~~~~~~~~~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+|+..+++.. ++..+|+.+... +++||+|++||||+.. .+....+++.+.++||
T Consensus 92 ~n~~~~~l~~~~i~~~~~d~~~~~~---~~~fD~Ii~~~p~~~~--------------------~~~~~~~l~~~~~~Lk 148 (194)
T d1dusa_ 92 ENIKLNNLDNYDIRVVHSDLYENVK---DRKYNKIITNPPIRAG--------------------KEVLHRIIEEGKELLK 148 (194)
T ss_dssp HHHHHTTCTTSCEEEEECSTTTTCT---TSCEEEEEECCCSTTC--------------------HHHHHHHHHHHHHHEE
T ss_pred HHHHHhCCccceEEEEEcchhhhhc---cCCceEEEEcccEEec--------------------chhhhhHHHHHHHhcC
Confidence 9999988754 788899876432 4789999999998632 2335788999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 165 KRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
|||+++++.........+...+.+..
T Consensus 149 pgG~l~i~~~~~~~~~~~~~~l~~~f 174 (194)
T d1dusa_ 149 DNGEIWVVIQTKQGAKSLAKYMKDVF 174 (194)
T ss_dssp EEEEEEEEEESTHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEeCcCCHHHHHHHHHHhC
Confidence 99999987665544445555555543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.82 E-value=3.2e-19 Score=139.40 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=112.2
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
.++.+ .+..+.+-..++..+. ..++.+|||+|||+|.+++.++.. ..+|+|+|+++++++.|++|++.+
T Consensus 10 ~~~~~--~~t~~eir~~il~~l~---~~~g~~VLDiGcGsG~~s~~lA~~------~~~V~avD~~~~~l~~a~~n~~~~ 78 (186)
T d1l3ia_ 10 NPSVP--GPTAMEVRCLIMCLAE---PGKNDVAVDVGCGTGGVTLELAGR------VRRVYAIDRNPEAISTTEMNLQRH 78 (186)
T ss_dssp CTTSC--CCCCHHHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHT
T ss_pred CCCCC--CCChHHHHHHHHHhcC---CCCCCEEEEEECCeEccccccccc------ceEEEEecCCHHHHHHHHHHHHHc
Confidence 34444 4445666666666653 368999999999999999887654 348999999999999999999999
Q ss_pred CCc-c-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 94 NVH-A-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 94 ~~~-~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
++. . +++++|+.+...+ ...||+|+++.+..+ ...+++.+.+.|||||++++
T Consensus 79 gl~~~v~~~~gda~~~~~~--~~~~D~v~~~~~~~~------------------------~~~~~~~~~~~LkpgG~lvi 132 (186)
T d1l3ia_ 79 GLGDNVTLMEGDAPEALCK--IPDIDIAVVGGSGGE------------------------LQEILRIIKDKLKPGGRIIV 132 (186)
T ss_dssp TCCTTEEEEESCHHHHHTT--SCCEEEEEESCCTTC------------------------HHHHHHHHHHTEEEEEEEEE
T ss_pred CCCcceEEEECchhhcccc--cCCcCEEEEeCcccc------------------------chHHHHHHHHHhCcCCEEEE
Confidence 985 3 8999998877543 478999999865421 46789999999999999998
Q ss_pred EEeCCCCHHHHHHHHHHcCCcEEE
Q 025207 172 VTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
..........+.+.+.+.++....
T Consensus 133 ~~~~~e~~~~~~~~l~~~~~~~~~ 156 (186)
T d1l3ia_ 133 TAILLETKFEAMECLRDLGFDVNI 156 (186)
T ss_dssp EECBHHHHHHHHHHHHHTTCCCEE
T ss_pred EeeccccHHHHHHHHHHcCCCeEE
Confidence 765555566777888888876543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.79 E-value=9.4e-19 Score=140.82 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=87.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+.+. +++++|+.+. ++.+++||+|
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l--~~~~~~fD~v 85 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPF------VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM--PFTDERFHIV 85 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC--CSCTTCEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHh------CCEEEEEECCHHHHhhhhhcccccccccccccccccccc--cccccccccc
Confidence 67899999999999998776654 3589999999999999999999888765 8999998875 3446899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++.-.+.+.++ ...++.++.++|||||++++...
T Consensus 86 ~~~~~l~~~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 86 TCRIAAHHFPN---------------------PASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp EEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccCC---------------------HHHHHHHHHHhcCCCcEEEEEeC
Confidence 99765544433 56889999999999999998654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=1.1e-18 Score=141.04 Aligned_cols=115 Identities=14% Similarity=0.157 Sum_probs=92.5
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhc
Q 025207 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASG 107 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~ 107 (256)
+.+++... -+++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|++++..++.+. .++++|+.+.
T Consensus 6 ~~l~~~~~---~~~~~rILDiGcGtG~~~~~la~~------~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~ 76 (234)
T d1xxla_ 6 GLMIKTAE---CRAEHRVLDIGAGAGHTALAFSPY------VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL 76 (234)
T ss_dssp HHHHHHHT---CCTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC
T ss_pred HHHHHHhC---CCCCCEEEEeCCcCcHHHHHHHHh------CCeEEEEeCChhhhhhhhhhhcccccccccccccccccc
Confidence 44444433 368999999999999998777665 2489999999999999999999888765 8999999875
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
++.+++||+|+|.-.+.+.++ ...+++++.++|||||+++++...
T Consensus 77 --~~~~~~fD~v~~~~~l~~~~d---------------------~~~~l~~~~r~LkpgG~~~~~~~~ 121 (234)
T d1xxla_ 77 --PFPDDSFDIITCRYAAHHFSD---------------------VRKAVREVARVLKQDGRFLLVDHY 121 (234)
T ss_dssp --CSCTTCEEEEEEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --cccccccceeeeeceeecccC---------------------HHHHHHHHHHeeCCCcEEEEEEcC
Confidence 445789999999765544332 578899999999999999986543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=3.6e-18 Score=131.46 Aligned_cols=128 Identities=21% Similarity=0.227 Sum_probs=96.5
Q ss_pred CCccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025207 15 PEVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 15 ~~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
|...+|+++ .+.+++++..++ .++.+|||+|||+|.++++++.. +++++++|+++.+++.+++|++.
T Consensus 17 ~~~~Rpt~~~v~e~lf~~l~~~~-----~~g~~vLDl~~G~G~~~i~a~~~------ga~vv~vD~~~~a~~~~~~N~~~ 85 (171)
T d1ws6a1 17 PASARPSPVRLRKALFDYLRLRY-----PRRGRFLDPFAGSGAVGLEAASE------GWEAVLVEKDPEAVRLLKENVRR 85 (171)
T ss_dssp CTTCCCCCHHHHHHHHHHHHHHC-----TTCCEEEEETCSSCHHHHHHHHT------TCEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHhhccc-----cCCCeEEEeccccchhhhhhhhc------cchhhhcccCHHHHhhhhHHHHh
Confidence 556788877 567777777664 36889999999999999887765 56899999999999999999999
Q ss_pred cCCcceEEEcchhhchh--hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 93 HNVHADLINTDIASGLE--KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 93 ~~~~~~~~~~d~~~~~~--~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
+++..+++..+...... .....+||+|++||||...- ......++. ..+|+|||+++
T Consensus 86 ~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~~~-------------------~~~l~~l~~--~~ll~~~g~iv 144 (171)
T d1ws6a1 86 TGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDL-------------------AALFGELLA--SGLVEAGGLYV 144 (171)
T ss_dssp HTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCT-------------------THHHHHHHH--HTCEEEEEEEE
T ss_pred hccccceeeeehhcccccccccCCccceeEEccccccCH-------------------HHHHHHHHH--cCCcCCCeEEE
Confidence 99887777777654432 23457899999999995311 012333333 35899999998
Q ss_pred EEEe
Q 025207 171 LVTL 174 (256)
Q Consensus 171 ~~~~ 174 (256)
+.++
T Consensus 145 ie~~ 148 (171)
T d1ws6a1 145 LQHP 148 (171)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8554
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.76 E-value=1.5e-17 Score=133.44 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=87.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|..+..+++.+. .|+++|+|+|+|+.|++.|++++...+... .+..+|..+. ....+|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~--~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~----~~~~~d~ 111 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNIN--QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----EIKNASM 111 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCC--CSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC----CCCSEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhc--CCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc----cccccee
Confidence 5789999999999999988887644 468899999999999999999998766544 6677776554 2368899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++--+++.+..+ ...+++++++.|||||.+++...
T Consensus 112 i~~~~~l~~~~~~d-------------------~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 112 VILNFTLQFLPPED-------------------RIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp EEEESCGGGSCGGG-------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEeeeccccChhh-------------------HHHHHHHHHHhCCCCceeecccc
Confidence 99975554433222 56899999999999999999754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.76 E-value=3.8e-18 Score=136.41 Aligned_cols=107 Identities=13% Similarity=0.189 Sum_probs=87.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|+++....+....++.+|+.+. ++.+++||+|+
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~------~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l--~~~~~~fD~I~ 107 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY------GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL--SFEDKTFDYVI 107 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC--CSCTTCEEEEE
T ss_pred CCCCEEEEECCCcchhhhhHhhh------hcccccccccccchhhhhhhhccccccccccccccccc--cccCcCceEEE
Confidence 46789999999999999888764 56899999999999999999887776668888898875 34468999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.-.+.+.+. .....+++.+.++|||||++++...
T Consensus 108 ~~~~l~~~~~-------------------~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 108 FIDSIVHFEP-------------------LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp EESCGGGCCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EecchhhCCh-------------------hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 9655443321 1256889999999999999988654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=8.8e-18 Score=136.60 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=95.0
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
+...++.+.+.+. -.++.+|||+|||+|.++..+++. . +++|+|+|+|+.+++.|+++....++.. +++.
T Consensus 18 ~~~~~~~l~~~~~---l~pg~~VLDiGCG~G~~~~~la~~----~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~ 89 (245)
T d1nkva_ 18 TEEKYATLGRVLR---MKPGTRILDLGSGSGEMLCTWARD----H-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 89 (245)
T ss_dssp CHHHHHHHHHHTC---CCTTCEEEEETCTTCHHHHHHHHH----T-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CHHHHHHHHHHcC---CCCCCEEEEEcCCCCHHHHHHHHh----c-CCEEEEEecccchhhHHHHHHHHhhccccchhhh
Confidence 4555566666653 258899999999999988877765 3 4799999999999999999999998764 8999
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+.+.. .+++||+|++.-.+.+.++ ...++.+++++|||||++++..+
T Consensus 90 ~d~~~~~---~~~~fD~v~~~~~~~~~~d---------------------~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 90 NDAAGYV---ANEKCDVAACVGATWIAGG---------------------FAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp SCCTTCC---CSSCEEEEEEESCGGGTSS---------------------SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hHHhhcc---ccCceeEEEEEehhhccCC---------------------HHHHHHHHHHHcCcCcEEEEEec
Confidence 9998763 3588999999654443332 46889999999999999999664
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.75 E-value=1.9e-17 Score=137.37 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=88.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++.. +++|+|+|+++.+++.|+++....++.. +++++|+.+. ++.+++||+
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l--~~~~~sfD~ 138 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKF-----GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI--PCEDNSYDF 138 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC--SSCTTCEEE
T ss_pred CCCCEEEEeCCCCcHHHhhhhccC-----CcEEEEEeccchhhhhhhcccccccccccccccccccccc--cccccccch
Confidence 578999999999999988887752 5689999999999999999999888753 8999999876 445689999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|++.-.+.+.++ ...++.++.++|||||++++..+
T Consensus 139 V~~~~~l~h~~d---------------------~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 139 IWSQDAFLHSPD---------------------KLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp EEEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccchhhhccC---------------------HHHHHHHHHHhcCCCcEEEEEEe
Confidence 999766554433 46789999999999999998654
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.75 E-value=4.4e-18 Score=138.11 Aligned_cols=123 Identities=12% Similarity=0.125 Sum_probs=101.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-Ccc-eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|.++..+++.++ ++++|+++|.++++++.|++|+...+ ..+ ++..+|+.+... ++.||.
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~---~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~---~~~fD~ 157 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALN---GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS---DQMYDA 157 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHT---TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---SCCEEE
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc---cceeee
Confidence 6899999999999999999998763 56799999999999999999998764 333 899999877643 478999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
|+++.|- ...++..+.+.|||||++++..+...+...+...+++.||....
T Consensus 158 V~ld~p~--------------------------p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~ 208 (250)
T d1yb2a1 158 VIADIPD--------------------------PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLE 208 (250)
T ss_dssp EEECCSC--------------------------GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEE
T ss_pred eeecCCc--------------------------hHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeE
Confidence 9998662 23568899999999999999888766677788888888886543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=5e-18 Score=136.10 Aligned_cols=134 Identities=12% Similarity=0.093 Sum_probs=103.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. .+ .+|+|+|+|++|++.|++++...+... +++++|+.+.. +.+++||+|
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~----~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~--~~~~~fD~I 131 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLP----LF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT--PEPDSYDVI 131 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTT----TC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC--CCSSCEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHh----cC-CEEEEeecCHHHhhccccccccccccccccccccccccc--ccccccccc
Confidence 46789999999999986554332 33 489999999999999999988776655 89999998863 346899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------CHHHHHHH
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------DPSQICLQ 185 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~ 185 (256)
++.-.+.+.++++ ...++..+.++|||||.+++...... ..+++.+.
T Consensus 132 ~~~~~l~h~~~~~-------------------~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 192 (222)
T d2ex4a1 132 WIQWVIGHLTDQH-------------------LAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRI 192 (222)
T ss_dssp EEESCGGGSCHHH-------------------HHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHH
T ss_pred ccccccccchhhh-------------------hhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHH
Confidence 9976665544322 46789999999999999999754322 35678899
Q ss_pred HHHcCCcEEEEEecC
Q 025207 186 MMEKGYAARIVVQRS 200 (256)
Q Consensus 186 ~~~~g~~~~~~~~~~ 200 (256)
+.+.||+.+......
T Consensus 193 ~~~aGf~ii~~~~q~ 207 (222)
T d2ex4a1 193 ICSAGLSLLAEERQE 207 (222)
T ss_dssp HHHTTCCEEEEEECC
T ss_pred HHHcCCEEEEEEEeC
Confidence 999999887665443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=1.9e-17 Score=139.51 Aligned_cols=142 Identities=16% Similarity=0.156 Sum_probs=107.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhh--cCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKR--LAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~--~~~~fD 117 (256)
.++++|||+|||+|.++++++.. +.+|+++|+|+.+++.|++|+..|++.. +++++|+.+..... ..++||
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g------~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc------CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCC
Confidence 36899999999999999887754 3589999999999999999999999865 89999998875432 357899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC-HH----HHHHHHHHcCCc
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND-PS----QICLQMMEKGYA 192 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~----~~~~~~~~~g~~ 192 (256)
+|++|||.+........ .....+..++..+.++|+|||++++++++... .. .+.+.+...+..
T Consensus 218 ~Vi~DpP~~~~~~~~~~------------~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~ 285 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVE------------RAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRL 285 (318)
T ss_dssp EEEECCCCSCCSTTSHH------------HHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCccccchHHHH------------HHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCC
Confidence 99999998765442210 11234678899999999999999998876432 22 334455566666
Q ss_pred EEEEEecC
Q 025207 193 ARIVVQRS 200 (256)
Q Consensus 193 ~~~~~~~~ 200 (256)
...+....
T Consensus 286 ~~~~~~~~ 293 (318)
T d1wxxa2 286 LRVVEKRG 293 (318)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 65555433
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.74 E-value=2.7e-17 Score=129.84 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=104.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++..|||||||+|..++.+|+. +|+..++|+|+++.++..|.+++...++++ .++.+|+......+.++++|.|
T Consensus 28 ~~~PlvLeIGcG~G~~~~~lA~~----~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v 103 (204)
T d2fcaa1 28 NDNPIHIEVGTGKGQFISGMAKQ----NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRV 103 (204)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHH----CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred CCCceEEEEEecCcHHHHHHHHh----CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcc
Confidence 34568999999999999999888 899999999999999999999999999876 9999999876655567899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
+++.|-..... +....++ +...++..++++|||||++++.+......+.....+.+.++...
T Consensus 104 ~i~fp~P~~k~-----~h~k~Rl--------~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~~ 165 (204)
T d2fcaa1 104 YLNFSDPWPKK-----RHEKRRL--------TYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 165 (204)
T ss_dssp EEESCCCCCSG-----GGGGGST--------TSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred ccccccccchh-----hhcchhh--------hHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCccc
Confidence 88654221111 1111111 23688999999999999999977544555667777777776543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=1e-17 Score=136.32 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=90.4
Q ss_pred HHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh
Q 025207 30 ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE 109 (256)
Q Consensus 30 ~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~ 109 (256)
.+...+......++++|||+|||+|..++.+++. +++|+|+|+|++|++.|++++...+.+..++++|+.+...
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~------~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~ 102 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF 102 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc------ceEEEEEeeccccccccccccccccccchheehhhhhccc
Confidence 3333333333467789999999999998887775 4589999999999999999999888888999999988632
Q ss_pred hhcCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 110 KRLAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 110 ~~~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+++||+|+|.. .+.+.+ ......+++++.++|||||++++..+.
T Consensus 103 ---~~~fD~I~~~~~~~~~~~-------------------~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 103 ---KNEFDAVTMFFSTIMYFD-------------------EEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp ---CSCEEEEEECSSGGGGSC-------------------HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---ccccchHhhhhhhhhcCC-------------------hHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 36899999842 221111 123568899999999999999986553
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.73 E-value=4.7e-17 Score=128.41 Aligned_cols=163 Identities=15% Similarity=0.094 Sum_probs=116.5
Q ss_pred eccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 12 SSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 12 ~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
..+|.++.|.+... ..+| .+.+ ......|||||||+|.+++.+|+. +|+..++|+|+++.++..|.+++.
T Consensus 7 ~~~p~~~~~~p~~~-~~~w-~~~f----~~~~plvLdIGcG~G~~~~~lA~~----~p~~~~iGid~~~~~v~~a~~~~~ 76 (204)
T d1yzha1 7 EANPQYVVLNPLEA-KAKW-RDLF----GNDNPIHVEVGSGKGAFVSGMAKQ----NPDINYIGIDIQKSVLSYALDKVL 76 (204)
T ss_dssp HTCTTTEECCGGGT-TTTH-HHHH----TSCCCEEEEESCTTSHHHHHHHHH----CTTSEEEEEESCHHHHHHHHHHHH
T ss_pred HhCcceEecChHHh-hccH-HHHc----CCCCCeEEEEeccCCHHHHHHHHH----CCCCceEEEeccHHHHHHHHHhhh
Confidence 45677777776522 1122 1222 235578999999999999999988 899999999999999999999999
Q ss_pred HcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 92 AHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 92 ~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
..++++ .++.+|+......+.+.++|.|+++.|--... .+....++ +...+++.+.++|||||.++
T Consensus 77 ~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdPw~K-----~~h~krRl--------~~~~~l~~~~~~LkpgG~l~ 143 (204)
T d1yzha1 77 EVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPK-----KRHEKRRL--------TYKTFLDTFKRILPENGEIH 143 (204)
T ss_dssp HHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCS-----GGGGGGST--------TSHHHHHHHHHHSCTTCEEE
T ss_pred hhccccceeeecCHHHHhhhccCCceehhcccccccccc-----hhhhhhhh--------hHHHHHHHHHHhCCCCcEEE
Confidence 999876 99999988765555678999998876521111 11111111 24688999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 171 LVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
+.+.......+....+...++.....+
T Consensus 144 i~TD~~~Y~~~~le~~~~~~~~~~~~~ 170 (204)
T d1yzha1 144 FKTDNRGLFEYSLVSFSQYGMKLNGVW 170 (204)
T ss_dssp EEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEECCccHHHHHHHHHHHCCccccccc
Confidence 977544445566666666676554444
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=4.5e-17 Score=137.95 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=119.2
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhccc-CCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQE-VPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~-~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+|+|++.+.++++.+...+. .+++.+|||+|||+|.+++++...+... .....++|+|+++.+++.|+.++..++
T Consensus 94 ~~~TP~~i~~~m~~l~~~~~~---~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~ 170 (328)
T d2f8la1 94 HQMTPDSIGFIVAYLLEKVIQ---KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR 170 (328)
T ss_dssp GCCCCHHHHHHHHHHHHHHHT---TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred eEECcHHHHHHHHHHHHHHhC---CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh
Confidence 357898877777776655443 3567899999999999999888776443 345689999999999999999999888
Q ss_pred CcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 95 VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 95 ~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.......+|..... ...+||+|++||||......+...........+ .......++..+.++|+|||+++++.+
T Consensus 171 ~~~~~~~~d~~~~~---~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~---~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 171 QKMTLLHQDGLANL---LVDPVDVVISDLPVGYYPDDENAKTFELCREEG---HSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp CCCEEEESCTTSCC---CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSS---CEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhhhcccccccc---ccccccccccCCCCCCCccchhhhhcchhcccC---cchHHHHHHHHHHHhcCCCCceEEEec
Confidence 87788888865542 246899999999997654432211111111111 112345688999999999999999887
Q ss_pred CC----CCHHHHHHHHHHcC
Q 025207 175 TA----NDPSQICLQMMEKG 190 (256)
Q Consensus 175 ~~----~~~~~~~~~~~~~g 190 (256)
.. .....+++.+.+.+
T Consensus 245 ~~~l~~~~~~~lR~~L~~~~ 264 (328)
T d2f8la1 245 DAMFGTSDFAKVDKFIKKNG 264 (328)
T ss_dssp GGGGGSTTHHHHHHHHHHHE
T ss_pred CccccCchhHHHHHHHHhCC
Confidence 43 34456777777764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.72 E-value=2.4e-17 Score=129.71 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=89.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+++|||+|||+|..++.+++. +++|+|+|+|+.+++.++++....+++. .+...|+..... +++||+|+
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~------g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~I~ 100 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN------GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF---DGEYDFIL 100 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC---CCCEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHH------hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc---cccccEEE
Confidence 4569999999999999888875 5689999999999999999999888875 888888877643 47899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..+.+.+..+ ...++..+.++|+|||+++++..
T Consensus 101 ~~~~~~~~~~~~-------------------~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 101 STVVMMFLEAQT-------------------IPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp EESCGGGSCTTH-------------------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EeeeeecCCHHH-------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 988877665433 67899999999999999998764
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.72 E-value=4.5e-17 Score=122.84 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=84.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+++|||+|||+|.++++++.. +. .+|+++|.++.+++.+++|+..+++.. +++++|+...+.. ..++||+|
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r----ga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~-~~~~fDiI 87 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR----GM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC-LTGRFDLV 87 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT----TC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH-BCSCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHh----Cc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc-ccccccee
Confidence 6899999999999999987765 33 389999999999999999999998765 8999999886533 46789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH--hhccccCeEEEEEEe
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA--DKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~ 174 (256)
++||||. .......+..+ .++|+|+|++++.+.
T Consensus 88 f~DPPy~----------------------~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 88 FLDPPYA----------------------KETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp EECCSSH----------------------HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred Eechhhc----------------------cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 9999984 12234555544 357999999998544
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.71 E-value=2.5e-17 Score=133.84 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=89.6
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025207 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
.++.+.+.+... ..++++|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.+.+++++|+.+
T Consensus 23 ~~~~~~~~~~~~-~~~~~~vLDiGCG~G~~~~~l~~~------g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~ 95 (246)
T d1y8ca_ 23 WSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN 95 (246)
T ss_dssp HHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG
T ss_pred HHHHHHHHHHHh-CCCCCeEEEEeCcCCHHHHHHHHh------CCccEeeccchhhhhhccccccccCccceeeccchhh
Confidence 344444444321 245689999999999998877765 3489999999999999999998888888999999987
Q ss_pred chhhhcCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 107 GLEKRLAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
... +++||+|+|.. .+.+... ......+++.+.++|||||.+++..
T Consensus 96 ~~~---~~~fD~i~~~~~~~~~~~~------------------~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 96 LNI---NRKFDLITCCLDSTNYIID------------------SDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CCC---SCCEEEEEECTTGGGGCCS------------------HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hcc---cccccccceeeeeeeccCC------------------HHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 632 46899999832 2211111 2346789999999999999999744
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.71 E-value=5.9e-17 Score=132.42 Aligned_cols=136 Identities=12% Similarity=0.148 Sum_probs=103.1
Q ss_pred cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCcc
Q 025207 38 LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 38 ~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD 117 (256)
++..++.+|||+|||+|.++..++.. +. ..|+++|+++.+++.|+++..... ..+++++|+.+.. +.+++||
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~----~~-~~v~~vD~s~~~l~~a~~~~~~~~-~~~~~~~d~~~~~--~~~~~fD 160 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTK----LY-ATTDLLEPVKHMLEEAKRELAGMP-VGKFILASMETAT--LPPNTYD 160 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHH----HC-SEEEEEESCHHHHHHHHHHTTTSS-EEEEEESCGGGCC--CCSSCEE
T ss_pred CCCCCCCeEEEecccCChhhHHHHhh----cC-ceEEEEcCCHHHHHhhhccccccc-cceeEEccccccc--cCCCccc
Confidence 34467889999999999998877654 22 279999999999999998764221 1378899988763 3368899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHH
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQI 182 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~ 182 (256)
+|++...+.+.++.+ ...+++.+.+.|+|||.+++..+... ...++
T Consensus 161 ~I~~~~vl~hl~d~d-------------------~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~ 221 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDAD-------------------FVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHY 221 (254)
T ss_dssp EEEEESCGGGSCHHH-------------------HHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHH
T ss_pred eEEeeccccccchhh-------------------hHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHH
Confidence 999987776654422 56889999999999999998664221 34578
Q ss_pred HHHHHHcCCcEEEEEecC
Q 025207 183 CLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 183 ~~~~~~~g~~~~~~~~~~ 200 (256)
.+++++.||+++......
T Consensus 222 ~~l~~~aGf~ii~~~~q~ 239 (254)
T d1xtpa_ 222 KRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHHHTCCEEEEEECT
T ss_pred HHHHHHcCCEEEEEEeeC
Confidence 999999999887655443
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.71 E-value=5.1e-16 Score=124.69 Aligned_cols=172 Identities=12% Similarity=0.056 Sum_probs=116.0
Q ss_pred ccCCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 13 SHPEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 13 ~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.....|+-+.. ...++..+..-+..++.+++.+|||+|||+|..+..++.. .|+..|+|+|+|+.|++.++++..
T Consensus 44 ~~~~e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~----~~~g~V~aVDiS~~~i~~a~~~a~ 119 (230)
T d1g8sa_ 44 IGDEEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADI----ADKGIVYAIEYAPRIMRELLDACA 119 (230)
T ss_dssp ETTEEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHH----TTTSEEEEEESCHHHHHHHHHHTT
T ss_pred cCCceeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHh----CCCCEEEEEeCcHHHHHHHHHHHh
Confidence 33444555444 5677777777777777789999999999999999888887 577899999999999999988765
Q ss_pred HcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 92 AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 92 ~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
..+ ...++.+|....... .+..+|++++..-+... .....++.++.+.|||||++++
T Consensus 120 ~~~-ni~~i~~d~~~~~~~-~~~~~~v~~i~~~~~~~---------------------~~~~~~l~~~~r~LKpgG~~~i 176 (230)
T d1g8sa_ 120 ERE-NIIPILGDANKPQEY-ANIVEKVDVIYEDVAQP---------------------NQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp TCT-TEEEEECCTTCGGGG-TTTCCCEEEEEECCCST---------------------THHHHHHHHHHHHEEEEEEEEE
T ss_pred hhc-ccceEEEeeccCccc-ccccceeEEeeccccch---------------------HHHHHHHHHHHHhcccCceEEE
Confidence 433 226677777665432 34455554442111111 1256779999999999999998
Q ss_pred EEeCCC---------CHHHHHHHHHHcCCcEEEEEec-CCCCccEEEEEE
Q 025207 172 VTLTAN---------DPSQICLQMMEKGYAARIVVQR-STEEENLHIIKF 211 (256)
Q Consensus 172 ~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~~~ 211 (256)
+..... ..++..+.+++.||+....... .....+..++-.
T Consensus 177 ~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~py~~~H~~vvg~ 226 (230)
T d1g8sa_ 177 AIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred EeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCCCcCCeEEEEEE
Confidence 653221 1245667888899987665432 223345444433
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=7.9e-17 Score=132.11 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=104.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|.++..+++.+ .|+++|+++|+++++++.|++|+...++.. .+...|+... +....||.
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~---~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~---~~~~~~D~ 175 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAV---GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---FDEKDVDA 175 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHT---TTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---CSCCSEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc---ccccceee
Confidence 699999999999999999999875 367799999999999999999999988754 6777776543 33478999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|+.+.|= ...+++.+.++|||||++++..+...+...+...+++.||....+..
T Consensus 176 V~~d~p~--------------------------p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 176 LFLDVPD--------------------------PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp EEECCSC--------------------------GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred eEecCCC--------------------------HHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEEEE
Confidence 9987651 24668999999999999999888777777888899999987655553
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=1.7e-16 Score=133.96 Aligned_cols=139 Identities=16% Similarity=0.165 Sum_probs=103.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh--cCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR--LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~--~~~~f 116 (256)
+++++|||+|||+|.+++.++.. + ..+|+++|+++.+++.+++|+..||+.. +++++|+.+..... ...+|
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~----g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIA----G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCCeeecccCcccchhhhhhhc----C-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCC
Confidence 47899999999999999988765 2 2389999999999999999999999854 89999998875432 35789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC-HHHH----HHHHHHcCC
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND-PSQI----CLQMMEKGY 191 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~----~~~~~~~g~ 191 (256)
|+|++|||++....... . .+...+.+++..+.++|+|||++++++++... .+++ .+...+.|-
T Consensus 219 D~Vi~DpP~~~~~~~~~-----~-------~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr 286 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDL-----K-------AGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGK 286 (324)
T ss_dssp EEEEECCCCSCSSGGGH-----H-------HHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTE
T ss_pred CchhcCCccccCCHHHH-----H-------HHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCC
Confidence 99999999876543211 0 11234678899999999999999998876542 2233 344444554
Q ss_pred cEEEE
Q 025207 192 AARIV 196 (256)
Q Consensus 192 ~~~~~ 196 (256)
....+
T Consensus 287 ~~~~~ 291 (324)
T d2as0a2 287 FLKML 291 (324)
T ss_dssp EEEES
T ss_pred eEEEe
Confidence 44443
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=7.2e-17 Score=131.74 Aligned_cols=126 Identities=21% Similarity=0.229 Sum_probs=101.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC---Ccc-eEEEcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN---VHA-DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~---~~~-~~~~~d~~~~~~~~~~~~f 116 (256)
+|+.+|||+|||+|.+++.++..+ +|+++|+++|+++++++.|++|+.... ..+ .+.++|+.+. ++.+++|
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~v---gp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~--~~~~~~f 169 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAV---GPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELPDGSV 169 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCCTTCE
T ss_pred CCCCEEEecCcCCcHHHHHHHHhh---CCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc--cccCCCc
Confidence 699999999999999999999987 467799999999999999999998642 223 8889998765 3346899
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHH-HcCCcEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMM-EKGYAARI 195 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~g~~~~~ 195 (256)
|.|+++.|- ...++..+.++|||||++++..|...+...+...++ +.+|....
T Consensus 170 DaV~ldlp~--------------------------P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~ 223 (264)
T d1i9ga_ 170 DRAVLDMLA--------------------------PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPR 223 (264)
T ss_dssp EEEEEESSC--------------------------GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCE
T ss_pred ceEEEecCC--------------------------HHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecce
Confidence 999997652 235688999999999999998887777777777775 44676544
Q ss_pred EE
Q 025207 196 VV 197 (256)
Q Consensus 196 ~~ 197 (256)
+.
T Consensus 224 ~~ 225 (264)
T d1i9ga_ 224 AW 225 (264)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=4.6e-16 Score=120.81 Aligned_cols=130 Identities=14% Similarity=0.180 Sum_probs=94.4
Q ss_pred eeccCC-ccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 11 VSSHPE-VYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~-~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+.+.++ ..+|+++ .+.+.+++...+ .+.+|||++||+|.++++++.. +. ..|+.+|.++.+++.++
T Consensus 15 l~~~~~~~~RPt~~~vre~lfn~l~~~~------~~~~vLDlfaGsG~~giealsr----Ga-~~v~~VE~~~~a~~~~k 83 (183)
T d2fpoa1 15 LPVPDSPGLRPTTDRVRETLFNWLAPVI------VDAQCLDCFAGSGALGLEALSR----YA-AGATLIEMDRAVSQQLI 83 (183)
T ss_dssp EECCCC------CHHHHHHHHHHHHHHH------TTCEEEETTCTTCHHHHHHHHT----TC-SEEEEECSCHHHHHHHH
T ss_pred ecCCCCCCcCcCcHHHHHHHHhhhhccc------chhhhhhhhccccceeeeEEec----Cc-ceeEEEEEeechhhHHH
Confidence 334433 4667665 555666555543 6789999999999999988876 33 38999999999999999
Q ss_pred HHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hccc
Q 025207 88 KTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLS 164 (256)
Q Consensus 88 ~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~Lk 164 (256)
+|+..++... .++..|+.+.+.. ...+||+|++||||.... ...++..+. .+|+
T Consensus 84 ~N~~~~~~~~~~ii~~d~~~~l~~-~~~~fDlIf~DPPY~~~~----------------------~~~~l~~l~~~~~L~ 140 (183)
T d2fpoa1 84 KNLATLKAGNARVVNSNAMSFLAQ-KGTPHNIVFVDPPFRRGL----------------------LEETINLLEDNGWLA 140 (183)
T ss_dssp HHHHHTTCCSEEEECSCHHHHHSS-CCCCEEEEEECCSSSTTT----------------------HHHHHHHHHHTTCEE
T ss_pred HHHhhccccceeeeeecccccccc-cccccCEEEEcCccccch----------------------HHHHHHHHHHCCCCC
Confidence 9999887755 8999999887644 357899999999995311 344455543 4699
Q ss_pred cCeEEEEEEe
Q 025207 165 KRGWLYLVTL 174 (256)
Q Consensus 165 pgG~l~~~~~ 174 (256)
++|++++-+.
T Consensus 141 ~~~iIiiE~~ 150 (183)
T d2fpoa1 141 DEALIYVESE 150 (183)
T ss_dssp EEEEEEEEEE
T ss_pred CCeEEEEEec
Confidence 9999998543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.69 E-value=2.8e-16 Score=121.81 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=94.8
Q ss_pred cCCccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 14 HPEVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 14 ~~~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.....+|+++ .+.+.+++... .++.+|||++||+|.++++++.. +. ..|+++|.++.+++.+++|+.
T Consensus 17 ~~~~~RPt~~~vrealFn~l~~~------~~~~~vLDlfaGsG~~g~ea~sr----Ga-~~v~~ve~~~~a~~~~~~N~~ 85 (182)
T d2fhpa1 17 DGDNTRPTTDKVKESIFNMIGPY------FDGGMALDLYSGSGGLAIEAVSR----GM-DKSICIEKNFAALKVIKENIA 85 (182)
T ss_dssp CCCSSCCCCHHHHHHHHHHHCSC------CSSCEEEETTCTTCHHHHHHHHT----TC-SEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCcCcCcHHHHHHHHHHHHHh------cCCCEEEEcccccccccceeeec----ch-hHHHHHHHHHHHHHHHHHHhh
Confidence 3345667665 44444443322 36899999999999999988886 32 379999999999999999999
Q ss_pred HcCCcc--eEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hcccc
Q 025207 92 AHNVHA--DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLSK 165 (256)
Q Consensus 92 ~~~~~~--~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~Lkp 165 (256)
.++... +++++|+...+... ...+||+|+++|||.... ....+..+. .+|++
T Consensus 86 ~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~----------------------~~~~l~~i~~~~~L~~ 143 (182)
T d2fhpa1 86 ITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQE----------------------IVSQLEKMLERQLLTN 143 (182)
T ss_dssp HHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCC----------------------HHHHHHHHHHTTCEEE
T ss_pred hhhcccccccccccchhhhhhhcccCCCcceEEechhhhhhH----------------------HHHHHHHHHHCCCCCC
Confidence 888754 89999998876542 345799999999984211 345555553 47999
Q ss_pred CeEEEEEEe
Q 025207 166 RGWLYLVTL 174 (256)
Q Consensus 166 gG~l~~~~~ 174 (256)
+|++++-+.
T Consensus 144 ~giIi~E~~ 152 (182)
T d2fhpa1 144 EAVIVCETD 152 (182)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEcC
Confidence 999987443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.68 E-value=9.2e-16 Score=125.32 Aligned_cols=145 Identities=12% Similarity=0.137 Sum_probs=106.3
Q ss_pred eccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 12 SSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 12 ~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
++....+.++..++. ..+...+ +++.+|||+|||+|.+++.+++. +.++|+++|+++.+++.+++|++
T Consensus 84 d~~~~~f~~~~~~er--~ri~~~~-----~~g~~VlD~~aG~G~~~l~~a~~-----~~~~V~avd~n~~a~~~~~~N~~ 151 (260)
T d2frna1 84 DVAKIMFSPANVKER--VRMAKVA-----KPDELVVDMFAGIGHLSLPIAVY-----GKAKVIAIEKDPYTFKFLVENIH 151 (260)
T ss_dssp ETTTSCCCGGGHHHH--HHHHHHC-----CTTCEEEETTCTTTTTHHHHHHH-----TCCEEEEECCCHHHHHHHHHHHH
T ss_pred ccccccEecCCHHHH--HHHHhhc-----CCccEEEECcceEcHHHHHHHHh-----CCcEEEEecCCHHHHHHHHHHHH
Confidence 344455666544332 2344443 57999999999999999998876 24589999999999999999999
Q ss_pred HcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025207 92 AHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 92 ~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
.|++.. +++++|+.+... ++.||.|++|||.. ...++..+.++|++||++
T Consensus 152 ~n~l~~~v~~~~~D~~~~~~---~~~~D~Ii~~~p~~-------------------------~~~~l~~a~~~l~~gG~l 203 (260)
T d2frna1 152 LNKVEDRMSAYNMDNRDFPG---ENIADRILMGYVVR-------------------------THEFIPKALSIAKDGAII 203 (260)
T ss_dssp HTTCTTTEEEECSCTTTCCC---CSCEEEEEECCCSS-------------------------GGGGHHHHHHHEEEEEEE
T ss_pred HhCCCceEEEEEcchHHhcc---CCCCCEEEECCCCc-------------------------hHHHHHHHHhhcCCCCEE
Confidence 999876 889999988653 36899999998853 234567778899999998
Q ss_pred EEEEeC------CCCHHHHHHHHHHcCCcEEEE
Q 025207 170 YLVTLT------ANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 170 ~~~~~~------~~~~~~~~~~~~~~g~~~~~~ 196 (256)
.+.... ....+.+.+.....|+....+
T Consensus 204 h~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 204 HYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp EEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred EEEeccccccchhhHHHHHHHHHHHcCCceEEE
Confidence 653321 112345666777788876543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.68 E-value=1.6e-16 Score=131.62 Aligned_cols=119 Identities=17% Similarity=0.246 Sum_probs=92.7
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025207 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
+.+.+.+.+..+ .++.+|||+|||+|.++..++..+. .+++|+|+|+++.+++.|++++...+.+.+++.+|+.+
T Consensus 14 ~l~~l~~~~~~~--~~~~~ILDiGcG~G~~~~~la~~~~---~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~ 88 (281)
T d2gh1a1 14 YVSFLVNTVWKI--TKPVHIVDYGCGYGYLGLVLMPLLP---EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE 88 (281)
T ss_dssp HHHHHHHTTSCC--CSCCEEEEETCTTTHHHHHHTTTSC---TTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTT
T ss_pred HHHHHHHHHhcc--CCcCEEEEecCcCCHHHHHHHHhCC---CCCEEEEEecchhHhhhhhccccccccccccccccccc
Confidence 345555544222 4678999999999998877666521 25789999999999999999998887777899999877
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.. + +++||+|+++..+.+.++ ...+++++.+.|||||.+++..+
T Consensus 89 ~~--~-~~~fD~v~~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 89 IE--L-NDKYDIAICHAFLLHMTT---------------------PETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CC--C-SSCEEEEEEESCGGGCSS---------------------HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cc--c-cCCceEEEEehhhhcCCC---------------------HHHHHHHHHHHcCcCcEEEEEEC
Confidence 52 2 468999999876655443 46789999999999999998774
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3e-16 Score=131.84 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=99.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-----------c-ceEEEcchhhch
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-----------H-ADLINTDIASGL 108 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-----------~-~~~~~~d~~~~~ 108 (256)
.++.+|||+|||+|.+++.++..++ |+++|+++|+++++++.|++|++..+. . ..+.++|+.+..
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg---~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~ 173 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVG---SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 173 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC---TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred CCCCEEEEecccccHHHHHHHHHhC---CCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc
Confidence 6899999999999999999999874 677999999999999999999986421 1 278889987765
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025207 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
....+..||.|+++.|- ...++..+.++|||||++++..|+..+...+...++.
T Consensus 174 ~~~~~~~fD~V~LD~p~--------------------------P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~ 227 (324)
T d2b25a1 174 EDIKSLTFDAVALDMLN--------------------------PHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRT 227 (324)
T ss_dssp -------EEEEEECSSS--------------------------TTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCCCcceEeecCcC--------------------------HHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 44456789999998652 1245888999999999999988877777777777875
Q ss_pred c--CCcEEEEEecC
Q 025207 189 K--GYAARIVVQRS 200 (256)
Q Consensus 189 ~--g~~~~~~~~~~ 200 (256)
. +|..+.+....
T Consensus 228 ~~~~f~~i~~~E~~ 241 (324)
T d2b25a1 228 CELALSCEKISEVI 241 (324)
T ss_dssp HTCCEEEEEEECCC
T ss_pred cCCCceeeEEEEEE
Confidence 4 46555554443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.67 E-value=9.4e-17 Score=125.47 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=84.8
Q ss_pred cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-------------cceEEEcch
Q 025207 38 LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-------------HADLINTDI 104 (256)
Q Consensus 38 ~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-------------~~~~~~~d~ 104 (256)
+...++.+|||+|||+|..+..+++. +++|+|+|+|+.|++.|+++....+. ...+..+|+
T Consensus 16 l~~~~~~rvLd~GCG~G~~a~~la~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 89 (201)
T d1pjza_ 16 LNVVPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF 89 (201)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHc------CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence 33468899999999999999988886 67999999999999999998754322 226777777
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.+.... ....||+|++.-.+.+.+. .....+++.+.++|||||.+++....
T Consensus 90 ~~l~~~-~~~~~D~i~~~~~l~~l~~-------------------~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 90 FALTAR-DIGHCAAFYDRAAMIALPA-------------------DMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp SSSTHH-HHHSEEEEEEESCGGGSCH-------------------HHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred cccccc-cccceeEEEEEeeeEecch-------------------hhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 665322 2468999998654433222 22568899999999999998886643
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.67 E-value=9.4e-16 Score=125.08 Aligned_cols=131 Identities=17% Similarity=0.208 Sum_probs=102.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
...++|||+|||+|.+++.+++. +|+.+++++|+ +.+++.+++++...++.. +++.+|+.+.. ..+||+
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~----~~~~D~ 149 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARR----APHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL----PRKADA 149 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC----SSCEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHh----cceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc----ccchhh
Confidence 45689999999999998888877 88999999998 678999999999887654 89999987643 257999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
|++.-.+++.++. ....+++++++.|||||++++.....
T Consensus 150 v~~~~vlh~~~d~-------------------~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~ 210 (253)
T d1tw3a2 150 IILSFVLLNWPDH-------------------DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLG 210 (253)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHS
T ss_pred eeeccccccCCch-------------------hhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCC
Confidence 9997555443322 24678999999999999999865321
Q ss_pred ---CCHHHHHHHHHHcCCcEEEEEec
Q 025207 177 ---NDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 177 ---~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
...++..+++++.||....+...
T Consensus 211 g~~rt~~e~~~ll~~AGf~~~~v~~~ 236 (253)
T d1tw3a2 211 GALRTREKWDGLAASAGLVVEEVRQL 236 (253)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 12457778899999987766543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.66 E-value=3.2e-16 Score=127.77 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=91.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|..+..+++. . ..+|+|+|+|+.|++.|+++....+.. ..+.++|+...... ..++||+
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~----~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-~~~~fD~ 96 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERA----G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDV 96 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH----T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHc----C-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-ccccceE
Confidence 57899999999999987777665 2 248999999999999999988776654 37889998654322 3568999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
|+|....++.... .+.+..+++.+.++|||||++++..+. ...+...+....
T Consensus 97 V~~~~~l~~~~~~-----------------~~~~~~~l~~i~~~Lk~gG~~i~~~~~---~~~i~~~~~~~~ 148 (252)
T d1ri5a_ 97 ISSQFSFHYAFST-----------------SESLDIAQRNIARHLRPGGYFIMTVPS---RDVILERYKQGR 148 (252)
T ss_dssp EEEESCGGGGGSS-----------------HHHHHHHHHHHHHTEEEEEEEEEEEEC---HHHHHHHHHHTC
T ss_pred EEEcceeeecCCC-----------------HHHHHHHHHHHhceeCCCCEEEEEecC---HHHHHHHHHhcc
Confidence 9997544332221 234678999999999999999987763 345555555443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=3.8e-15 Score=119.09 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=110.4
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...|+-+.. ...++..|+.-+..++.+++.+|||+|||+|..+..++..++ +++.|+|+|+++.+++.++++++..
T Consensus 45 ~~e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG---~~G~V~aVD~s~~~l~~a~~~a~~~ 121 (227)
T d1g8aa_ 45 GEEYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVG---WEGKIFGIEFSPRVLRELVPIVEER 121 (227)
T ss_dssp TEEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHC---TTSEEEEEESCHHHHHHHHHHHSSC
T ss_pred CeeEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHHhc
Confidence 344544444 567777787777777778999999999999999999999874 5679999999999999999887544
Q ss_pred CCcceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 94 NVHADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 94 ~~~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+ ....+..|...... ......+|+|+++.++.. ....++.++.+.|||||+++++
T Consensus 122 ~-~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~-----------------------~~~~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 122 R-NIVPILGDATKPEEYRALVPKVDVIFEDVAQPT-----------------------QAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp T-TEEEEECCTTCGGGGTTTCCCEEEEEECCCSTT-----------------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred C-CceEEEEECCCcccccccccceEEEEEEccccc-----------------------hHHHHHHHHHHhcccCCeEEEE
Confidence 3 22566677655432 223467999999876531 2467899999999999999986
Q ss_pred EeCCC-----CHHHH---HHHHHHcCCcEEEEE
Q 025207 173 TLTAN-----DPSQI---CLQMMEKGYAARIVV 197 (256)
Q Consensus 173 ~~~~~-----~~~~~---~~~~~~~g~~~~~~~ 197 (256)
..... ..+.+ ...+.+.+|+.....
T Consensus 178 ~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~i 210 (227)
T d1g8aa_ 178 VKSRSIDVTKEPEQVFREVERELSEYFEVIERL 210 (227)
T ss_dssp EEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EECCccCCCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 53221 12222 223345688875543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1.5e-15 Score=119.49 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=67.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+++|||+|||+|.++++++.. + ...|+|+|+++.+++.+++|+..++...+++.+|.... .++||+|+
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~----g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~-----~~~fD~Vi 114 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLL----G-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-----NSRVDIVI 114 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-----CCCCSEEE
T ss_pred CCCCEEEECcCcchHHHHHHHHc----C-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh-----CCcCcEEE
Confidence 47899999999999999887654 2 24899999999999999999998888889999998664 46899999
Q ss_pred ECCCCCCC
Q 025207 121 VNPPYVPT 128 (256)
Q Consensus 121 ~npP~~~~ 128 (256)
+||||...
T Consensus 115 ~nPP~~~~ 122 (201)
T d1wy7a1 115 MNPPFGSQ 122 (201)
T ss_dssp ECCCCSSS
T ss_pred EcCccccc
Confidence 99999643
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.66 E-value=2e-15 Score=126.71 Aligned_cols=120 Identities=14% Similarity=0.154 Sum_probs=93.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhh--cCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKR--LAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~--~~~~ 115 (256)
.++++|||++||+|.+++.++.. ....|+++|+++.+++.+++|+..|++.. +++.+|+.+.+... ...+
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~-----ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~ 217 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMG-----GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 217 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-----TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred hCCCceeecCCCCcHHHHHHHhC-----CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCC
Confidence 36899999999999999887764 12379999999999999999999999853 89999998887543 3468
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
||+||+|||.+...... -......+..++..+.++|+|||++++++++..
T Consensus 218 fD~Ii~DPP~f~~~~~~------------~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~ 267 (317)
T d2b78a2 218 YDIIIIDPPSFARNKKE------------VFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 267 (317)
T ss_dssp EEEEEECCCCC-----C------------CCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCEEEEcChhhccchhH------------HHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 99999999976433221 112234467899999999999999999887544
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=3.1e-16 Score=129.04 Aligned_cols=109 Identities=13% Similarity=0.223 Sum_probs=86.2
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..++.+|||+|||+|.++..+++. .++++++|+|+|+.+++.|+++. .+..+.++|+.+. ++.+++||+|
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~~~giD~s~~~~~~a~~~~----~~~~~~~~d~~~l--~~~~~sfD~v 151 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADA----LPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRL--PFSDTSMDAI 151 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHT----CTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSC--SBCTTCEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHH----CCCCEEEEecchHhhhhhhhccc----ccccceeeehhhc--cCCCCCEEEE
Confidence 467899999999999998877776 67889999999999999988753 2348899998876 4557899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
++.... ..++++.++|||||++++++++.+...++...+
T Consensus 152 ~~~~~~----------------------------~~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~~ 190 (268)
T d1p91a_ 152 IRIYAP----------------------------CKAEELARVVKPGGWVITATPGPRHLMELKGLI 190 (268)
T ss_dssp EEESCC----------------------------CCHHHHHHHEEEEEEEEEEEECTTTTHHHHTTT
T ss_pred eecCCH----------------------------HHHHHHHHHhCCCcEEEEEeeCCcchHHHHHHh
Confidence 985321 115678999999999999998777666654433
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.6e-15 Score=120.57 Aligned_cols=141 Identities=13% Similarity=0.020 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc----------
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---------- 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---------- 93 (256)
...+++++...+. ..++.+|||+|||+|..+..+++. +++|+|+|+|+.+++.|+++....
T Consensus 30 ~~~l~~~~~~~l~---~~~~~rvLd~GCG~G~~a~~LA~~------G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~ 100 (229)
T d2bzga1 30 HQLLKKHLDTFLK---GKSGLRVFFPLCGKAVEMKWFADR------GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIP 100 (229)
T ss_dssp CHHHHHHHHHHHT---TCCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTST
T ss_pred CHHHHHHHHHhcC---CCCCCEEEEeCCCCcHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHhhccccccchhccc
Confidence 3556666655543 257889999999999999888876 679999999999999998875432
Q ss_pred --------CCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 94 --------NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 94 --------~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
+...++.++|+.+... ...+.||+|+..--+.+.+... ...++..+.++|||
T Consensus 101 ~~~~~~~~~~~v~~~~~d~~~l~~-~~~~~fd~i~~~~~l~~~~~~~-------------------r~~~~~~~~~~Lkp 160 (229)
T d2bzga1 101 GTKVFKSSSGNISLYCCSIFDLPR-TNIGKFDMIWDRGALVAINPGD-------------------RKCYADTMFSLLGK 160 (229)
T ss_dssp TCEEEEETTSSEEEEESCGGGGGG-SCCCCEEEEEESSSTTTSCGGG-------------------HHHHHHHHHHTEEE
T ss_pred ccceeeecCCcEEEEEcchhhccc-cccCceeEEEEEEEEEeccchh-------------------hHHHHHHHHhhcCC
Confidence 1123788899877643 2467899999876665554432 57889999999999
Q ss_pred CeEEEEEEeCCC-----------CHHHHHHHHHHcCCcEE
Q 025207 166 RGWLYLVTLTAN-----------DPSQICLQMMEKGYAAR 194 (256)
Q Consensus 166 gG~l~~~~~~~~-----------~~~~~~~~~~~~g~~~~ 194 (256)
||++++...... ..+++..++.. +|.+.
T Consensus 161 gG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~ 199 (229)
T d2bzga1 161 KFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIR 199 (229)
T ss_dssp EEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred cceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEE
Confidence 999888764332 34567777743 45443
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=3.9e-15 Score=122.94 Aligned_cols=105 Identities=12% Similarity=0.156 Sum_probs=83.2
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
.+++.+|||||||+|.++..+++. .+++|+|+|+|+++++.|++++...++.. .+...|..+. +++||
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~-----~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~-----~~~fD 119 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVER-----FDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-----AEPVD 119 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHH-----HCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-----CCCCS
T ss_pred CCCCCEEEEecCCchHHHHHHHHh-----CceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh-----ccchh
Confidence 478999999999999998887776 25699999999999999999999888765 5555565443 57899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.|++.--+.+.+. ..+..+++.+.++|||||++++-+
T Consensus 120 ~i~si~~~eh~~~-------------------~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 120 RIVSIEAFEHFGH-------------------ENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp EEEEESCGGGTCG-------------------GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhHhhHHHHhhh-------------------hhHHHHHHHHHhccCCCceEEEEE
Confidence 9999543332221 126789999999999999999854
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=4.3e-16 Score=125.82 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=78.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. +++|+|+|+|+.|++.|+++. . ..++.+|+.+. ++.+++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~l~~a~~~~----~-~~~~~~~~~~l--~~~~~~fD~ii 107 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKG----V-KNVVEAKAEDL--PFPSGAFEAVL 107 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHT----C-SCEEECCTTSC--CSCTTCEEEEE
T ss_pred CCCCEEEEECCCCchhccccccc------ceEEEEeeccccccccccccc----c-ccccccccccc--cccccccccee
Confidence 46789999999999998877654 569999999999999998763 1 25777888775 34568999999
Q ss_pred ECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 121 VNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 121 ~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+.- .+.+.++ ...+++++.++|||||++++..++
T Consensus 108 ~~~~~~~~~~d---------------------~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 108 ALGDVLSYVEN---------------------KDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp ECSSHHHHCSC---------------------HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eecchhhhhhh---------------------HHHHHHHHHhhcCcCcEEEEEECC
Confidence 842 2222221 467899999999999999997653
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.64 E-value=2.7e-15 Score=124.59 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=95.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhh--cCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKR--LAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~--~~~~ 115 (256)
.++.+|||++||+|.++++++.. +++|+++|.|+.+++.|++|+..|++.. +++++|+.+.+... ...+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~------GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~ 204 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGST 204 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred cCCCeEEEecCCCcHHHHHHHhC------CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCC
Confidence 46789999999999999988764 5689999999999999999999998753 89999999887543 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-C-CHHHHHHHHHH
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-N-DPSQICLQMME 188 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~-~~~~~~~~~~~ 188 (256)
||+||+|||.+........ +. -...+..++..+..+|+|||.+++++... . ....+...+.+
T Consensus 205 fD~IilDPP~f~~~~~~~~--~~---------~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~ 268 (309)
T d2igta1 205 YDIILTDPPKFGRGTHGEV--WQ---------LFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRE 268 (309)
T ss_dssp BSEEEECCCSEEECTTCCE--EE---------HHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCcccccccchh--HH---------HHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999997643322110 00 11235567788999999999766654422 2 23344444443
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=5.2e-16 Score=123.37 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=88.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.++..+++.+. .+++.+|||+|||+|..+..+++.++ +++.|+++|+++++++.|+++++..+..+ .++++|.
T Consensus 62 ~~~a~~l~~l~---l~~g~~VLdiG~GtG~~s~~la~~~~---~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~ 135 (213)
T d1dl5a1 62 SLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVG---EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG 135 (213)
T ss_dssp HHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG
T ss_pred hhhHHHHHhhh---ccccceEEEecCccchhHHHHHHHhC---CCCcEEEeecchhhHHHhhhhHhhhcccccccccCch
Confidence 45566666654 36899999999999999999988763 56799999999999999999999988876 7888898
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.+.... .++||+|+++....+. .+.+.+.|||||++++.
T Consensus 136 ~~~~~~--~~~fD~I~~~~~~~~~---------------------------p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 136 YYGVPE--FSPYDVIFVTVGVDEV---------------------------PETWFTQLKEGGRVIVP 174 (213)
T ss_dssp GGCCGG--GCCEEEEEECSBBSCC---------------------------CHHHHHHEEEEEEEEEE
T ss_pred HHcccc--ccchhhhhhhccHHHh---------------------------HHHHHHhcCCCcEEEEE
Confidence 776443 4789999997543211 23356679999999873
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=1.1e-14 Score=120.78 Aligned_cols=122 Identities=14% Similarity=0.183 Sum_probs=90.5
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchh
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIA 105 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~ 105 (256)
.+.+.+.+. .+++.+|||||||.|.+++.+++. + +++|+|+++|++.++.+++.+...++.. .+...|..
T Consensus 50 ~~~~~~~l~---l~~G~~VLDiGCG~G~~~~~~a~~----~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~ 121 (291)
T d1kpia_ 50 RKLALDKLN---LEPGMTLLDIGCGWGSTMRHAVAE----Y-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE 121 (291)
T ss_dssp HHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHH----H-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred HHHHHHhcC---CCCCCEEEEecCcchHHHHHHHHh----c-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc
Confidence 444555543 478999999999999998888776 3 5799999999999999999999888765 55566653
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
. .+++||.|++.--+-+.++.. +..+...+..+++.+.++|||||++++-+.
T Consensus 122 ~-----~~~~fD~i~sie~~eH~~~~~------------~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 122 E-----FDEPVDRIVSLGAFEHFADGA------------GDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp G-----CCCCCSEEEEESCGGGTTCCS------------SCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred c-----cccccceEeechhHHhcchhh------------hhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 2 358999999953332222110 112334578999999999999999998543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.63 E-value=2.6e-14 Score=112.95 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=90.0
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...++..++.- ..++-+|+.+|||+|||+|..+..++.. .++.+|+|+|+++.+++.|+++.+..+ ...++.+|
T Consensus 39 rsklaa~i~~g-~~l~lkpg~~VLDlGcG~G~~~~~la~~----v~~g~V~gvDis~~~i~~a~~~a~~~~-ni~~i~~d 112 (209)
T d1nt2a_ 39 RSKLAAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADI----VDEGIIYAVEYSAKPFEKLLELVRERN-NIIPLLFD 112 (209)
T ss_dssp GCHHHHHHHTS-CCCCCCSSCEEEEETCTTSHHHHHHHHH----TTTSEEEEECCCHHHHHHHHHHHHHCS-SEEEECSC
T ss_pred chHHHHHHhcc-ccCCCCCCCEEEEeCCcCCHHHHHHHHh----ccCCeEEEEeCCHHHHHHHHHHhhccC-CceEEEee
Confidence 34555555543 2344579999999999999999888887 456699999999999999999887654 33788888
Q ss_pred hhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 104 IASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....... .....+|+|+.+.++. .....++.++.+.|||||+++++.
T Consensus 113 ~~~~~~~~~~~~~vd~v~~~~~~~-----------------------~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 113 ASKPWKYSGIVEKVDLIYQDIAQK-----------------------NQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp TTCGGGTTTTCCCEEEEEECCCST-----------------------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCccccccccceEEEEEecccCh-----------------------hhHHHHHHHHHHHhccCCeEEEEE
Confidence 7765322 2234577777765432 124678999999999999999865
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=3.1e-15 Score=118.10 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=91.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..+ . .++|+|+|+.+++.|+++ ...++++|+.+. ++.+++||+|++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~----~------~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l--~~~~~~fD~I~~ 97 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL----K------IKIGVEPSERMAEIARKR------GVFVLKGTAENL--PLKDESFDFALM 97 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH----T------CCEEEESCHHHHHHHHHT------TCEEEECBTTBC--CSCTTCEEEEEE
T ss_pred CCCeEEEECCCCccccccc----c------eEEEEeCChhhccccccc------cccccccccccc--cccccccccccc
Confidence 5678999999999975332 2 468999999999998874 237999998876 334689999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----------------------C
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----------------------D 178 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------~ 178 (256)
.-.+.+.++ ...+++++.++|+|||.+++..+... .
T Consensus 98 ~~~l~h~~d---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 156 (208)
T d1vlma_ 98 VTTICFVDD---------------------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFS 156 (208)
T ss_dssp ESCGGGSSC---------------------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCC
T ss_pred ccccccccc---------------------cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCC
Confidence 765544432 56889999999999999999775432 2
Q ss_pred HHHHHHHHHHcCCcEEEEEe
Q 025207 179 PSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~ 198 (256)
..++.+++++.||+...+..
T Consensus 157 ~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 157 TEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEEE
Confidence 45788999999998665543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.63 E-value=9.1e-15 Score=119.32 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=108.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
...+|||||||+|.++..+++. +|+.+++++|+ +++++.+++++...+... .++.+|+.+.. +.++|+|
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~----~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~----p~~~D~v 151 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALR----APHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL----PVTADVV 151 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC----SCCEEEE
T ss_pred cCCEEEEECCCCCHHHHHHHHh----hcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc----cccchhh
Confidence 5589999999999998888887 89999999997 889999999999888754 78888887643 2469999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
++.-.+++.++. ....+++++++.|||||+++++....
T Consensus 152 ~~~~vLh~~~d~-------------------~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~ 212 (256)
T d1qzza2 152 LLSFVLLNWSDE-------------------DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMG 212 (256)
T ss_dssp EEESCGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHS
T ss_pred hccccccccCcH-------------------HHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCC
Confidence 996555443322 25688999999999999999876311
Q ss_pred ---CCHHHHHHHHHHcCCcEEEEEecCC--CCccEEEEEEE
Q 025207 177 ---NDPSQICLQMMEKGYAARIVVQRST--EEENLHIIKFW 212 (256)
Q Consensus 177 ---~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~l~~~~ 212 (256)
...+++.+++++.||+...+..... ....+.++++.
T Consensus 213 g~~rt~~e~~~ll~~AGf~~~~~~~~~~~~~~~~~~v~E~~ 253 (256)
T d1qzza2 213 GRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 253 (256)
T ss_dssp CCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEE
T ss_pred CccCCHHHHHHHHHHCCCceeEEEEeCCcCccCceEEEEEE
Confidence 1245778888999998877665432 34455666654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=9.3e-16 Score=123.29 Aligned_cols=111 Identities=13% Similarity=-0.016 Sum_probs=86.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||||||+|..+..+++. . ..+++|+|+|+.+++.|+++....+....++..++......+.+++||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~----~-~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 126 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEA----P-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 126 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTS----C-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHc----C-CCeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccccccccccee
Confidence 47899999999999987776654 2 348999999999999999998776666678888887776666678999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.+........ ........+++.+.++|||||++++.
T Consensus 127 fD~~~~~~~~----------------~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 127 YDTYPLSEET----------------WHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp ECCCCCBGGG----------------TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eccccccccc----------------ccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 8764321110 01223678899999999999999873
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.62 E-value=4.3e-15 Score=118.91 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=90.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++++|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++.. ....++.+|+.+... +++||+|++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~------g~~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~~~~---~~~fD~I~~ 87 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH------FNDITCVEASEEAISHAQGRLK---DGITYIHSRFEDAQL---PRRYDNIVL 87 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT------CSCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGGCCC---SSCEEEEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHc------CCeEEEEeCcHHHhhhhhcccc---ccccccccccccccc---ccccccccc
Confidence 5779999999999987655543 4589999999999999987642 234788888877532 578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh-hccccCeEEEEEEeCCC-----------------------
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD-KLLSKRGWLYLVTLTAN----------------------- 177 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~----------------------- 177 (256)
.-.+.+.++ ...++.++. ++|+|||++++..+...
T Consensus 88 ~~vleh~~d---------------------~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (225)
T d2p7ia1 88 THVLEHIDD---------------------PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAE 146 (225)
T ss_dssp ESCGGGCSS---------------------HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHH
T ss_pred cceeEecCC---------------------HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccc
Confidence 765544433 457788887 78999999999875422
Q ss_pred ---------CHHHHHHHHHHcCCcEEE
Q 025207 178 ---------DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 178 ---------~~~~~~~~~~~~g~~~~~ 195 (256)
....+.+.+.+.||+...
T Consensus 147 ~~~~h~~~~~~~~l~~~l~~~Gf~i~~ 173 (225)
T d2p7ia1 147 FAHGHRCTYALDTLERDASRAGLQVTY 173 (225)
T ss_dssp HHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred cceeeeeccCHHHHHHHHHHCCCEEEE
Confidence 234677888888887544
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=1e-14 Score=120.46 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=84.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
.+++.+|||||||.|.+++.+++. . +++|+|+++|++.++.|++++...++.. ++..+|..+. +++||
T Consensus 60 l~~G~~VLDiGCG~G~~a~~~a~~----~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~-----~~~fD 129 (285)
T d1kpga_ 60 LQPGMTLLDVGCGWGATMMRAVEK----Y-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-----DEPVD 129 (285)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHH----H-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-----CCCCS
T ss_pred CCCCCEEEEecCcchHHHHHHHhc----C-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc-----ccccc
Confidence 479999999999999999888886 3 6899999999999999999998887654 7888887554 47899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.|++---+-+ .+.. .+..+++.+.++|||||++++-+.
T Consensus 130 ~i~si~~~eh---------------~~~~----~~~~~~~~~~r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 130 RIVSIGAFEH---------------FGHE----RYDAFFSLAHRLLPADGVMLLHTI 167 (285)
T ss_dssp EEEEESCGGG---------------TCTT----THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ceeeehhhhh---------------cCch----hHHHHHHHHHhhcCCCCcEEEEEE
Confidence 9998422211 1111 257899999999999999997443
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.1e-14 Score=120.97 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=86.7
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-----eEEE
Q 025207 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-----DLIN 101 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-----~~~~ 101 (256)
..+++.+.+. ..++++|||+|||+|.+++.+++. +++|+|+|+|+.|++.|+++....+... .+..
T Consensus 44 ~~~~l~~~l~---~~~~~~vLD~GcG~G~~~~~la~~------g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~ 114 (292)
T d1xvaa_ 44 YKAWLLGLLR---QHGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE 114 (292)
T ss_dssp HHHHHHHHHH---HTTCCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEE
T ss_pred HHHHHHHHhh---hcCCCEEEEecCCCcHHHHHHHHc------CCeeeeccCchHHHHHHHHHHHhcccccccceeeeee
Confidence 3445555443 246789999999999999888875 5689999999999999999987766543 4555
Q ss_pred cchhhchhhh-cCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 102 TDIASGLEKR-LAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 102 ~d~~~~~~~~-~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.++....... ...+||+|+|-. .+.+.+.. .........+++++.++|||||++++...
T Consensus 115 ~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 115 ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDS--------------KGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp CCGGGHHHHSCCTTCEEEEEECSSCGGGSCCT--------------TSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccCCCCCceEEEEecCchhhcCCc--------------ccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 5554432222 246899999832 22222211 11123467899999999999999998554
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.59 E-value=1.4e-14 Score=112.27 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=91.3
Q ss_pred ccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025207 17 VYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 17 ~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
..+|+++ .+.+.+++...+ .+.+|||++||||.++++++.. +. ..++.+|.+..+++.+++|++..+
T Consensus 22 ~~RPt~~~vrealFn~l~~~~------~~~~vLDlFaGsG~~glEalSR----GA-~~v~fVE~~~~a~~~ik~Ni~~l~ 90 (183)
T d2ifta1 22 GLRPTGDRVKETLFNWLMPYI------HQSECLDGFAGSGSLGFEALSR----QA-KKVTFLELDKTVANQLKKNLQTLK 90 (183)
T ss_dssp ------CHHHHHHHHHHHHHH------TTCEEEETTCTTCHHHHHHHHT----TC-SEEEEECSCHHHHHHHHHHHHHTT
T ss_pred CcCcCcHHHHHHHHHHhhhhc------ccceEeecccCccceeeeeeee----cc-eeeEEeecccchhhhHhhHHhhhc
Confidence 5788877 677777776654 5789999999999999998876 32 389999999999999999999887
Q ss_pred Ccc---eEEEcchhhchhhh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hccccCeE
Q 025207 95 VHA---DLINTDIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLSKRGW 168 (256)
Q Consensus 95 ~~~---~~~~~d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~ 168 (256)
... .++..|..+..... ...+||+|+++|||... ....++..+. .+|+++|.
T Consensus 91 ~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~~----------------------~~~~~l~~l~~~~~L~~~~l 148 (183)
T d2ifta1 91 CSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFN----------------------LAEQAISLLCENNWLKPNAL 148 (183)
T ss_dssp CCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSSC----------------------HHHHHHHHHHHTTCEEEEEE
T ss_pred ccccccccccccccccccccccCCcccEEEechhHhhh----------------------hHHHHHHHHHHhCCcCCCcE
Confidence 643 66777776665432 24579999999999531 1445566554 57999999
Q ss_pred EEEEEe
Q 025207 169 LYLVTL 174 (256)
Q Consensus 169 l~~~~~ 174 (256)
+++-+.
T Consensus 149 iiiE~~ 154 (183)
T d2ifta1 149 IYVETE 154 (183)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 998554
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.4e-15 Score=120.84 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=98.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcce----------------------
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHAD---------------------- 98 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~---------------------- 98 (256)
.++.+|||+|||+|..++.++.. + ...|+|+|+|+.+++.|++++........
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~----~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACD----S-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE 124 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG----T-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcc----c-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHH
Confidence 46789999999999875433332 2 23799999999999999999876543210
Q ss_pred ---------EEEcchh--hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025207 99 ---------LINTDIA--SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 99 ---------~~~~d~~--~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
....+.. ....+...++||+|++...+.+.+. ....+..+++++.++|||||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~-----------------~~~~~~~~l~~i~~~LkpGG 187 (257)
T d2a14a1 125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC-----------------SLDAYRAALCNLASLLKPGG 187 (257)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS-----------------SHHHHHHHHHHHHTTEEEEE
T ss_pred HHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcc-----------------cHHHHHHHHHHHHhccCCCc
Confidence 1111111 1112334678999998543322111 12346788999999999999
Q ss_pred EEEEEEeCCC---------------CHHHHHHHHHHcCCcEEEEEec-------CCCCccEEEEEEEec
Q 025207 168 WLYLVTLTAN---------------DPSQICLQMMEKGYAARIVVQR-------STEEENLHIIKFWRD 214 (256)
Q Consensus 168 ~l~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~l~~~~~~ 214 (256)
.+++...... ..+++.+.+++.||++..+... ......++++.++|+
T Consensus 188 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKk 256 (257)
T d2a14a1 188 HLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 256 (257)
T ss_dssp EEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred EEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeC
Confidence 9999764322 4678999999999987555321 122344566666665
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3.6e-15 Score=119.22 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=86.5
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc------ceE
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH------ADL 99 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~------~~~ 99 (256)
.++..+++.+.. ..+++.+|||+|||+|..+..++++++ +..+|+++|+++++++.|++++...++. ..+
T Consensus 61 ~~~a~~le~L~~-~l~~g~~VLdiG~GsGy~ta~la~l~~---~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~ 136 (224)
T d1i1na_ 61 HMHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVG---CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 136 (224)
T ss_dssp HHHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred HHHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhC---CCceEEEEcCCHHHHHHHHHhccccCcccccccceEE
Confidence 345556665421 125889999999999999988888764 5679999999999999999999876653 278
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.+|......+ .+.||.|+++.... .+...+.+.|||||++++..
T Consensus 137 ~~gD~~~~~~~--~~~fD~I~~~~~~~---------------------------~ip~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 137 VVGDGRMGYAE--EAPYDAIHVGAAAP---------------------------VVPQALIDQLKPGGRLILPV 181 (224)
T ss_dssp EESCGGGCCGG--GCCEEEEEECSBBS---------------------------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEeecccccch--hhhhhhhhhhcchh---------------------------hcCHHHHhhcCCCcEEEEEE
Confidence 88998776543 47899999964322 12234567899999999843
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.57 E-value=1.1e-14 Score=113.55 Aligned_cols=73 Identities=22% Similarity=0.386 Sum_probs=59.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|||+|||+|.+++.++.. ++ ..|+|+|+++.+++.|++|+. ..+++++|+.+. +++||+|+
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~----ga-~~V~~vDid~~a~~~ar~N~~----~~~~~~~D~~~l-----~~~fD~Vi 112 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLL----GA-ESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEI-----SGKYDTWI 112 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT----TB-SEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGC-----CCCEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc----CC-CcccccccCHHHHHHHHHccc----cccEEEEehhhc-----CCcceEEE
Confidence 36899999999999998877765 22 379999999999999998863 348999998664 47899999
Q ss_pred ECCCCCC
Q 025207 121 VNPPYVP 127 (256)
Q Consensus 121 ~npP~~~ 127 (256)
+||||..
T Consensus 113 ~NPPfg~ 119 (197)
T d1ne2a_ 113 MNPPFGS 119 (197)
T ss_dssp ECCCC--
T ss_pred eCcccch
Confidence 9999953
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.1e-14 Score=117.49 Aligned_cols=132 Identities=9% Similarity=0.118 Sum_probs=92.3
Q ss_pred hHHHHHHHHHhhcccc-----cCCCCEEEEecccccHHHHHHHHHhcccCCC--ceEEEEeCCHHHHHHHHHHHHHcC-C
Q 025207 24 SFALVDALLADRINLV-----EHHPVLCMEVGCGSGYVITSLALMLGQEVPG--VQYIATDINPYAVEVTRKTLEAHN-V 95 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~-----~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~--~~v~giD~~~~~i~~a~~~~~~~~-~ 95 (256)
...+-+++.+.+..+. .++..+|||+|||+|.++..++..+...+++ ..++|+|+|+.|++.+++++.... .
T Consensus 17 ~~~~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~ 96 (280)
T d1jqea_ 17 HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL 96 (280)
T ss_dssp HHHHHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc
Confidence 4444455544443321 2344589999999999999888877655554 468999999999999999886532 2
Q ss_pred cc---eEEEcchhhch----hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 96 HA---DLINTDIASGL----EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 96 ~~---~~~~~d~~~~~----~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
.. .+...++.+.. ....+++||+|++.-.+++.++ ...+++.+.++|+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d---------------------~~~~l~~l~~~LkpgG~ 155 (280)
T d1jqea_ 97 ENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD---------------------IPATLKFFHSLLGTNAK 155 (280)
T ss_dssp TTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSC---------------------HHHHHHHHHHTEEEEEE
T ss_pred ccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCC---------------------HHHHHHHHHhhCCCCCE
Confidence 22 45565554332 1234688999999766544433 56889999999999999
Q ss_pred EEEEEeCC
Q 025207 169 LYLVTLTA 176 (256)
Q Consensus 169 l~~~~~~~ 176 (256)
++++....
T Consensus 156 l~i~~~~~ 163 (280)
T d1jqea_ 156 MLIIVVSG 163 (280)
T ss_dssp EEEEEECT
T ss_pred EEEEEecC
Confidence 99877544
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=99.56 E-value=2.1e-14 Score=125.44 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=111.6
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCC---------ceEEEEeCCHHHHHH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG---------VQYIATDINPYAVEV 85 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~---------~~v~giD~~~~~i~~ 85 (256)
..+|+|++...++ .+.+. +.++.+|+|++||+|.+++++.+.+.+.... ..++|+|+++.++..
T Consensus 142 G~f~TP~~Iv~~m----v~ll~---~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~l 214 (425)
T d2okca1 142 GQYFTPRPLIQAM----VDCIN---PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTL 214 (425)
T ss_dssp GGGCCCHHHHHHH----HHHHC---CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHH
T ss_pred hhhccchhhhHhh----heecc---CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHH
Confidence 4589996544444 44432 2467899999999999999998887644322 359999999999999
Q ss_pred HHHHHHHcCCcc---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhc
Q 025207 86 TRKTLEAHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKL 162 (256)
Q Consensus 86 a~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (256)
|+-|+..++... .+...|..... ...+||+|++||||............ ..+..+.. .....++..+.++
T Consensus 215 a~~n~~l~g~~~~~~~i~~~d~l~~~---~~~~fD~Ii~NPPfg~~~~~~~~~~~--~~~~~~~~--~~~~~Fi~~~~~~ 287 (425)
T d2okca1 215 ASMNLYLHGIGTDRSPIVCEDSLEKE---PSTLVDVILANPPFGTRPAGSVDINR--PDFYVETK--NNQLNFLQHMMLM 287 (425)
T ss_dssp HHHHHHHTTCCSSCCSEEECCTTTSC---CSSCEEEEEECCCSSCCCTTCCCCCC--TTSSSCCS--CHHHHHHHHHHHH
T ss_pred HHhhhhhcCCccccceeecCchhhhh---cccccceEEecCCCCCCccccchhhh--hhcccccc--cHHHHHHHHHHHh
Confidence 999999888653 67777776542 24689999999999765543322111 11111111 1245688999999
Q ss_pred cccCeEEEEEEeCC---CC--HHHHHHHHHHcC
Q 025207 163 LSKRGWLYLVTLTA---ND--PSQICLQMMEKG 190 (256)
Q Consensus 163 LkpgG~l~~~~~~~---~~--~~~~~~~~~~~g 190 (256)
|++||++.++.+.. .. ...+++++.+.+
T Consensus 288 Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~ 320 (425)
T d2okca1 288 LKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDF 320 (425)
T ss_dssp EEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHE
T ss_pred cCCCCeEEEEechHHhhhhhhHHHHHHHHHHhc
Confidence 99999999988732 21 246677776654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.53 E-value=8.2e-14 Score=110.77 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=99.8
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025207 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
+|+|. .+++.+++.+. ..++.+|||+|||+|.++.++.+... ....++|+|+++.+++.++ .
T Consensus 1 v~TP~----~i~~~m~~l~~---~~~~~~IlDp~~G~G~fl~~~~~~~~---~~~~i~g~ei~~~~~~~~~--------~ 62 (223)
T d2ih2a1 1 VETPP----EVVDFMVSLAE---APRGGRVLEPACAHGPFLRAFREAHG---TAYRFVGVEIDPKALDLPP--------W 62 (223)
T ss_dssp CCCCH----HHHHHHHHHCC---CCTTCEEEEETCTTCHHHHHHHHHHC---SCSEEEEEESCTTTCCCCT--------T
T ss_pred CCCCH----HHHHHHHHhcC---CCCcCEEEECCCchHHHHHHHHHhcc---ccceEEeeecCHHHHhhcc--------c
Confidence 57884 44555555443 25788999999999999887766532 3468999999987654332 2
Q ss_pred ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccc-------hh-hhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025207 97 ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGI-------AS-AWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..++++|...... ...||+|++||||............. .. .........+....++..+.+.|++||+
T Consensus 63 ~~~~~~~~~~~~~---~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~ 139 (223)
T d2ih2a1 63 AEGILADFLLWEP---GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGV 139 (223)
T ss_dssp EEEEESCGGGCCC---SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEE
T ss_pred ceeeeeehhcccc---ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCc
Confidence 3677888766532 36899999999997654422211111 00 1111122223456778999999999999
Q ss_pred EEEEEeCCC----CHHHHHHHHHHcC
Q 025207 169 LYLVTLTAN----DPSQICLQMMEKG 190 (256)
Q Consensus 169 l~~~~~~~~----~~~~~~~~~~~~g 190 (256)
+.++.+..- ....+++++.+.+
T Consensus 140 ~~~I~p~~~l~~~~~~~lR~~l~~~~ 165 (223)
T d2ih2a1 140 LVFVVPATWLVLEDFALLREFLAREG 165 (223)
T ss_dssp EEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred eEEEEeeeeccCcchHHHHHHHHhcC
Confidence 999887432 3456677777654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2.7e-13 Score=115.61 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=109.7
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
.+++++.+. .+.+++.+++.+. ..++.+|||+.||+|.+++.+++. ..+|+|+|+++.+++.|++|+..|
T Consensus 187 ~sFfQ~N~~~~e~l~~~v~~~~~---~~~~~~vlDLycG~G~fsl~La~~------~~~V~gvE~~~~ai~~A~~na~~n 257 (358)
T d1uwva2 187 RDFIQVNAGVNQKMVARALEWLD---VQPEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQNARLN 257 (358)
T ss_dssp SSCCCSBHHHHHHHHHHHHHHHT---CCTTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHT
T ss_pred chhhccchhhhhHHHHHHHHhhc---cCCCceEEEecccccccchhcccc------ccEEEeccCcHHHHHHHHHhHHhc
Confidence 356777766 7888888887764 256789999999999999988875 348999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 94 NVHA-DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++.+ .++.++..+.+... ....+|+||.|||=. | ....+..+.+ ++|.-++|
T Consensus 258 ~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~---------------------G---~~~~~~~l~~-~~~~~ivY 312 (358)
T d1uwva2 258 GLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA---------------------G---AAGVMQQIIK-LEPIRIVY 312 (358)
T ss_dssp TCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTT---------------------C---CHHHHHHHHH-HCCSEEEE
T ss_pred ccccceeeecchhhhhhhhhhhhccCceEEeCCCCc---------------------c---HHHHHHHHHH-cCCCEEEE
Confidence 9987 89999988765432 346799999999921 2 1234555554 47777777
Q ss_pred EEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025207 171 LVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
+++.+.+...++. .+.+.||....+.
T Consensus 313 VSCnp~TlaRDl~-~l~~~gy~l~~i~ 338 (358)
T d1uwva2 313 VSCNPATLARDSE-ALLKAGYTIARLA 338 (358)
T ss_dssp EESCHHHHHHHHH-HHHHTTCEEEEEE
T ss_pred EeCCHHHHHHHHH-HHHHCCCeEeEEE
Confidence 7654444444444 4456788876655
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.48 E-value=1.1e-13 Score=109.43 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
-.++..+++.+. .+++.+|||||||+|+.+..++++++ .+|+++|.++..++.|++++...+..+ .++++|
T Consensus 64 P~~~a~ml~~L~---l~~g~~VLeIGsGsGY~taila~l~g-----~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd 135 (215)
T d1jg1a_ 64 PHMVAIMLEIAN---LKPGMNILEVGTGSGWNAALISEIVK-----TDVYTIERIPELVEFAKRNLERAGVKNVHVILGD 135 (215)
T ss_dssp HHHHHHHHHHHT---CCTTCCEEEECCTTSHHHHHHHHHHC-----SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred hhhHHHHHHhhc---cCccceEEEecCCCChhHHHHHHhhC-----ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECc
Confidence 445566666654 36899999999999999998888753 479999999999999999999999876 999999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+..+. .+.||.|++...... +...+.+.|+|||++++..
T Consensus 136 ~~~g~~~--~~pfD~Iiv~~a~~~---------------------------ip~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 136 GSKGFPP--KAPYDVIIVTAGAPK---------------------------IPEPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp GGGCCGG--GCCEEEEEECSBBSS---------------------------CCHHHHHTEEEEEEEEEEE
T ss_pred cccCCcc--cCcceeEEeeccccc---------------------------CCHHHHHhcCCCCEEEEEE
Confidence 9887554 488999999643221 1223456799999999843
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=3.6e-13 Score=104.65 Aligned_cols=141 Identities=11% Similarity=0.175 Sum_probs=102.0
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch
Q 025207 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL 108 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~ 108 (256)
+.+++.+. ..++..+||++||+|..+..+++. .|++.|+|+|.++.|++.|++++...+....++++++.+..
T Consensus 13 ~evi~~l~---~~~~~~~lD~t~G~Gghs~~il~~----~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~ 85 (192)
T d1m6ya2 13 REVIEFLK---PEDEKIILDCTVGEGGHSRAILEH----CPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 85 (192)
T ss_dssp HHHHHHHC---CCTTCEEEETTCTTSHHHHHHHHH----CTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred HHHHHhhC---CCCCCEEEEecCCCcHHHHHHHhc----CCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHH
Confidence 34444443 368899999999999998887776 67889999999999999999998776656688888876542
Q ss_pred ---hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHH
Q 025207 109 ---EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQ 185 (256)
Q Consensus 109 ---~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 185 (256)
..+..++||.|+.+..+. . ..+....++.......+..+.++|+|||++++++........+.+.
T Consensus 86 ~~~~~~~~~~vdgIl~DlGvS---s---------~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~ 153 (192)
T d1m6ya2 86 FLLKTLGIEKVDGILMDLGVS---T---------YQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKET 153 (192)
T ss_dssp HHHHHTTCSCEEEEEEECSCC---H---------HHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHcCCCCcceeeeccchh---H---------hhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHH
Confidence 233357899999986652 1 1112233456678899999999999999999876433222233444
Q ss_pred HHH
Q 025207 186 MME 188 (256)
Q Consensus 186 ~~~ 188 (256)
+.+
T Consensus 154 f~~ 156 (192)
T d1m6ya2 154 FRN 156 (192)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.47 E-value=7.1e-14 Score=111.26 Aligned_cols=109 Identities=23% Similarity=0.216 Sum_probs=81.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+...+++.+. .+++.+|||+|||+|.++..++++. .+|+++|+++++++.|++++... .+..++.+|..
T Consensus 57 ~~~a~ml~~L~---l~~g~~VLdIG~GsGy~ta~La~l~------~~V~aiE~~~~~~~~A~~~~~~~-~nv~~~~~d~~ 126 (224)
T d1vbfa_ 57 NLGIFMLDELD---LHKGQKVLEIGTGIGYYTALIAEIV------DKVVSVEINEKMYNYASKLLSYY-NNIKLILGDGT 126 (224)
T ss_dssp HHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHS------SEEEEEESCHHHHHHHHHHHTTC-SSEEEEESCGG
T ss_pred hhHHHHHHHhh---hcccceEEEecCCCCHHHHHHHHHh------cccccccccHHHHHHHHHHHhcc-cccccccCchh
Confidence 34445555553 3689999999999999998888862 48999999999999999887543 23389999987
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
...++ .++||.|+++.... .+...+.+.|||||++++..
T Consensus 127 ~g~~~--~~pfD~Iiv~~a~~---------------------------~ip~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 127 LGYEE--EKPYDRVVVWATAP---------------------------TLLCKPYEQLKEGGIMILPI 165 (224)
T ss_dssp GCCGG--GCCEEEEEESSBBS---------------------------SCCHHHHHTEEEEEEEEEEE
T ss_pred hcchh--hhhHHHHHhhcchh---------------------------hhhHHHHHhcCCCCEEEEEE
Confidence 76544 47899999864321 12234557899999999843
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.1e-12 Score=117.33 Aligned_cols=161 Identities=9% Similarity=0.102 Sum_probs=106.5
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCC--------------ceEEEEeCCH
Q 025207 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG--------------VQYIATDINP 80 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~--------------~~v~giD~~~ 80 (256)
..+|+|++...++++ .+. +.++.+|+|++||+|.+++.+.+.+...... ..++|+|+++
T Consensus 144 GqfyTP~~Iv~~mv~----ll~---~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~ 216 (524)
T d2ar0a1 144 GQYFTPRPLIKTIIH----LLK---PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 216 (524)
T ss_dssp -CCCCCHHHHHHHHH----HHC---CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH
T ss_pred chhccccchhHhhhh----ccc---CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCH
Confidence 458999655555544 332 2467899999999999999888876543321 2699999999
Q ss_pred HHHHHHHHHHHHcCCcc------eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHH
Q 025207 81 YAVEVTRKTLEAHNVHA------DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDK 154 (256)
Q Consensus 81 ~~i~~a~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
.++..|+-|+..++... .+...+..... .....+||+|++||||........... ...... .....
T Consensus 217 ~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d-~~~~~kfD~Ii~NPPfg~~~~~~~~~~-----~~~~~~--~~~~~ 288 (524)
T d2ar0a1 217 GTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRT-----FVHPTS--NKQLC 288 (524)
T ss_dssp HHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHH-HHTSCCEEEEEECCCCTTCSSCCCCSC-----CSSCCS--CHHHH
T ss_pred HHHHHHHHHHHhhcccccccccchhhhhhhhhhc-ccccccceeEEecCCccccccccchhh-----hccccc--cccHH
Confidence 99999999998877643 34444443321 112467999999999976544322110 011111 11335
Q ss_pred HHHHHhhccccCeEEEEEEeCC----CC-HHHHHHHHHHcC
Q 025207 155 ILPSADKLLSKRGWLYLVTLTA----ND-PSQICLQMMEKG 190 (256)
Q Consensus 155 ~l~~~~~~LkpgG~l~~~~~~~----~~-~~~~~~~~~~~g 190 (256)
++..+.+.|++||++.++.|.. .. ...+++.+.+.+
T Consensus 289 Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~ 329 (524)
T d2ar0a1 289 FMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 329 (524)
T ss_dssp HHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE
T ss_pred HHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcC
Confidence 7888999999999999988732 12 235677776654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.6e-13 Score=111.10 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~ 102 (256)
..+.+.|..... ..++++|||+|||+|.+++.+++. ++ .+|+|+|.++.+.. +++++..++... .++++
T Consensus 21 ~~y~~ai~~~~~---~~~~~~VLDiGcG~G~lsl~aa~~----Ga-~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~ 91 (311)
T d2fyta1 21 ESYRDFIYQNPH---IFKDKVVLDVGCGTGILSMFAAKA----GA-KKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKG 91 (311)
T ss_dssp HHHHHHHHHCGG---GTTTCEEEEETCTTSHHHHHHHHT----TC-SEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEES
T ss_pred HHHHHHHHhccc---cCCcCEEEEECCCCCHHHHHHHHc----CC-CEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEe
Confidence 444455544332 247899999999999998888876 33 38999999998764 566666666543 88999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|+.+... ...+||+|++.+........ .....++....++|||||+++.
T Consensus 92 ~~~~l~~--~~~~~D~Ivse~~~~~~~~e------------------~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 92 KIEEVHL--PVEKVDVIISEWMGYFLLFE------------------SMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CTTTSCC--SCSCEEEEEECCCBTTBTTT------------------CHHHHHHHHHHHHEEEEEEEES
T ss_pred eHHHhcC--ccccceEEEEeeeeeecccc------------------cccHHHHHHHHhcCCCCcEEec
Confidence 9888633 35799999998665432221 1366778888899999999873
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=4.1e-13 Score=113.24 Aligned_cols=104 Identities=17% Similarity=0.285 Sum_probs=80.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|.+++.+++. +. .+|+|+|.++ +++.|++++..++... .++.+|+.+.. ..+.+||+
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~----Ga-~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~--~~~~~~D~ 108 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKH----GA-KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH--LPFPKVDI 108 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT----CC-SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--CSSSCEEE
T ss_pred CCcCEEEEeCCCCCHHHHHHHHh----CC-CEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc--CcccceeE
Confidence 37899999999999998887775 22 3899999986 6788999999888754 78899988763 33578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
|++.+........ .....++....++|||||+++
T Consensus 109 i~se~~~~~~~~e------------------~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 109 IISEWMGYFLLYE------------------SMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEECCCBTTBSTT------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecceeeccc------------------hhHHHHHHHHHhccCCCeEEE
Confidence 9997654322211 125678888899999999986
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=4.1e-13 Score=109.75 Aligned_cols=135 Identities=14% Similarity=0.083 Sum_probs=88.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-----------------------
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA----------------------- 97 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~----------------------- 97 (256)
..+.+|||+|||+|.+++..+. +.. .+|+|+|+++.|++.+++.+.......
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~----~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 127 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSAC----SHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKE 127 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGG----GGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhc----ccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhH
Confidence 4678999999999976432221 122 389999999999999998764322110
Q ss_pred --------eEEEcchhhchh----hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025207 98 --------DLINTDIASGLE----KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 98 --------~~~~~d~~~~~~----~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
.+...|+..... ...+++||+|++.....+.+ .....+..+++++.++|||
T Consensus 128 ~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~-----------------~~~~~~~~~l~~~~~~LkP 190 (263)
T d2g72a1 128 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS-----------------PDLASFQRALDHITTLLRP 190 (263)
T ss_dssp HHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC-----------------SSHHHHHHHHHHHHTTEEE
T ss_pred HHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHc-----------------cCHHHHHHHHHHHHHHcCC
Confidence 233344433211 12346799999853321111 1123478899999999999
Q ss_pred CeEEEEEEeCC---------------CCHHHHHHHHHHcCCcEEEEE
Q 025207 166 RGWLYLVTLTA---------------NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 166 gG~l~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~ 197 (256)
||.+++..... -..+++.+++.+.||+.+.+.
T Consensus 191 GG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 191 GGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp EEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999865311 256799999999999875543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=2.9e-13 Score=113.53 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=80.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++++|||+|||+|.+++.+++. ++ .+|+|+|.++. ...+++++..+++.. .++++|+.+.. ...++||+|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~----Ga-~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~--~~~~~~D~i 104 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKA----GA-RKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE--LPVEKVDII 104 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----TC-SEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC--CSSSCEEEE
T ss_pred CcCEEEEEecCCcHHHHHHHHh----CC-CEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc--cccceeEEE
Confidence 7899999999999999888875 32 37999999975 577788888888764 88899988763 235789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++.......... ..+..++..+.++|||||+++
T Consensus 105 vs~~~~~~l~~e------------------~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 105 ISEWMGYCLFYE------------------SMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp EECCCBBTBTBT------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeeeeeeccH------------------HHHHHHHHHHHhcCCCCeEEE
Confidence 997654322211 126788999999999999987
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.42 E-value=2.2e-13 Score=108.43 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=85.3
Q ss_pred HHHHHHHhhc-ccccCCCCEEEEecccccHHHHHHHHHhcccC--CCceEEEEeCCHHHHHHHHHHHHHcC-----Cc-c
Q 025207 27 LVDALLADRI-NLVEHHPVLCMEVGCGSGYVITSLALMLGQEV--PGVQYIATDINPYAVEVTRKTLEAHN-----VH-A 97 (256)
Q Consensus 27 l~~~l~~~~~-~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~--~~~~v~giD~~~~~i~~a~~~~~~~~-----~~-~ 97 (256)
+...+++.+. .+ +++.+|||+|||+|+.+..++++++..+ ++.+|+++|+++++++.|++|+...+ .. .
T Consensus 66 ~~a~~l~~L~~~l--~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv 143 (223)
T d1r18a_ 66 MHAFALEYLRDHL--KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 143 (223)
T ss_dssp HHHHHHHHTTTTC--CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred hHHHHHHHHhhcc--CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEE
Confidence 4455565542 22 5889999999999999999999876432 34589999999999999999876543 22 3
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+..+|..+..++ .+.||.|+++.... .+...+.+.|||||++++..
T Consensus 144 ~~~~~d~~~~~~~--~~~fD~Iiv~~a~~---------------------------~~p~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 144 LIVEGDGRKGYPP--NAPYNAIHVGAAAP---------------------------DTPTELINQLASGGRLIVPV 190 (223)
T ss_dssp EEEESCGGGCCGG--GCSEEEEEECSCBS---------------------------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEEeccccccccc--ccceeeEEEEeech---------------------------hchHHHHHhcCCCcEEEEEE
Confidence 7889998876554 47899999965421 11233567899999998843
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1.5e-11 Score=101.33 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=109.4
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.+.....+..++-.++. ..++.+|||+|+|.|.-+..++.. ..+..|+++|+++..++.+++++++.|.
T Consensus 82 G~~~vQD~sS~l~~~~L~------~~~g~~vLD~CAaPGgKt~~la~l----~~~~~i~a~d~~~~R~~~l~~~~~r~g~ 151 (284)
T d1sqga2 82 GWVTVQDASAQGCMTWLA------PQNGEHILDLCAAPGGKTTHILEV----APEAQVVAVDIDEQRLSRVYDNLKRLGM 151 (284)
T ss_dssp TSEEECCHHHHTHHHHHC------CCTTCEEEEESCTTCHHHHHHHHH----CTTCEEEEEESSTTTHHHHHHHHHHTTC
T ss_pred cEEEeccccccccccccC------ccccceeEeccCccccchhhhhhh----hhhhhhhhhhcchhhhhhHhhhhhcccc
Confidence 344444445555544443 268899999999999999988876 3456899999999999999999999998
Q ss_pred cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEE
Q 025207 96 HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 96 ~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.+.....+..........+.||.|++++|-.... ..++.++..+.-.... ......++..+.++|||||+++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G---~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvY 228 (284)
T d1sqga2 152 KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATG---VIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVY 228 (284)
T ss_dssp CCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGG---GTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cceeeeccccccchhcccccccEEEEeccccccC---ccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 8744443333222223357899999999975432 2233444433222221 12466788999999999999999
Q ss_pred EEeCCCCH---HHHHHHHHHc
Q 025207 172 VTLTANDP---SQICLQMMEK 189 (256)
Q Consensus 172 ~~~~~~~~---~~~~~~~~~~ 189 (256)
++++.... ..+...++++
T Consensus 229 sTCS~~~~ENE~vv~~~l~~~ 249 (284)
T d1sqga2 229 ATCSVLPEENSLQIKAFLQRT 249 (284)
T ss_dssp EESCCCGGGTHHHHHHHHHHC
T ss_pred eeecCchhhCHHHHHHHHHhC
Confidence 99876533 2445555553
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.3e-12 Score=107.46 Aligned_cols=120 Identities=16% Similarity=0.126 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------CC-
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------NV- 95 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~~- 95 (256)
...+++.+++.+. .+++.+|||+|||+|.+++.+++. .+...++|+|+++.+++.|+++.... |.
T Consensus 136 ~~~~~~~~~~~~~---l~~~~~vlD~GcG~G~~~~~~a~~----~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~ 208 (328)
T d1nw3a_ 136 SFDLVAQMIDEIK---MTDDDLFVDLGSGVGQVVLQVAAA----TNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 208 (328)
T ss_dssp CHHHHHHHHHHSC---CCTTCEEEEETCTTSHHHHHHHHH----CCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcC---CCCCCEEEEcCCCCCHHHHHHHHH----hCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3455566666543 368899999999999999988877 55558999999999999998876542 22
Q ss_pred --cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 96 --HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 96 --~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+..++++|+.+......-...|+|++|--.+ . ..+...+.++.+.|||||+++..
T Consensus 209 ~~~i~~~~gd~~~~~~~~~~~~advi~~~~~~f-~---------------------~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 209 HAEYTLERGDFLSEEWRERIANTSVIFVNNFAF-G---------------------PEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCSEEEECCTTT-C---------------------HHHHHHHHHHHTTCCTTCEEEES
T ss_pred CCceEEEECcccccccccccCcceEEEEcceec-c---------------------hHHHHHHHHHHHhCCCCcEEEEe
Confidence 2389999997753211001357888863221 1 12567788999999999999874
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=1.1e-11 Score=97.82 Aligned_cols=123 Identities=19% Similarity=0.284 Sum_probs=89.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh----cCCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR----LAGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~----~~~~ 115 (256)
++++|||+|||+|..++.+++.+. ++++++++|+++++++.|++++...|+.. +++.+|..+.++.+ ..+.
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~---~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQ---PGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCC---TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCC---CccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence 678999999999999998887653 46799999999999999999999999865 89999998876543 2367
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
||+|+.+.- +........+..+.++|+|||++++-..-.....+..+.+++.
T Consensus 133 ~D~ifiD~~----------------------~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~~ 184 (214)
T d2cl5a1 133 LDMVFLDHW----------------------KDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGS 184 (214)
T ss_dssp EEEEEECSC----------------------GGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHHC
T ss_pred cceeeeccc----------------------ccccccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhcc
Confidence 999998621 1111123346677889999998776211122233445555544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=5.7e-12 Score=98.68 Aligned_cols=127 Identities=14% Similarity=0.188 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~ 102 (256)
...+..++++.+..++--++.+|+|+|||.|..++.+|.. +|+.+++.+|.+..-+...+.-+...++.+ .+++.
T Consensus 47 ~~~~~rHi~DSl~~~~~~~~~~ilDiGsGaG~PGi~laI~----~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~ 122 (207)
T d1jsxa_ 47 NEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIV----RPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQS 122 (207)
T ss_dssp -CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHH----CTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred HHHHHHHhcchHhhhhhhcCCceeeeeccCCceeeehhhh----cccceEEEEecchHHHHHHHHHHHHcCCcceeeecc
Confidence 4455566666654443346789999999999999999987 789999999999999999999999999875 89999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHH
Q 025207 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQI 182 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 182 (256)
++.+... +.+||+|++-. ...+..+++-+..+++++|.+++.- +....+++
T Consensus 123 R~E~~~~---~~~fD~V~sRA-------------------------~~~~~~ll~~~~~~l~~~g~~~~~K-G~~~~eEl 173 (207)
T d1jsxa_ 123 RVEEFPS---EPPFDGVISRA-------------------------FASLNDMVSWCHHLPGEQGRFYALK-GQMPEDEI 173 (207)
T ss_dssp CTTTSCC---CSCEEEEECSC-------------------------SSSHHHHHHHHTTSEEEEEEEEEEE-SSCCHHHH
T ss_pred chhhhcc---ccccceehhhh-------------------------hcCHHHHHHHHHHhcCCCcEEEEEC-CCCHHHHH
Confidence 9887633 36899998821 1226788999999999999999854 44445554
Q ss_pred H
Q 025207 183 C 183 (256)
Q Consensus 183 ~ 183 (256)
.
T Consensus 174 ~ 174 (207)
T d1jsxa_ 174 A 174 (207)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.9e-12 Score=101.50 Aligned_cols=104 Identities=21% Similarity=0.241 Sum_probs=86.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh----cCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR----LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~----~~~ 114 (256)
..+++|||+|||+|..+++++..+. ++++++++|.+++..+.|++++...++.. +++.+|+.+.++.. ..+
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~---~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~ 134 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALP---ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 134 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSC---TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCeEEEEechhhHHHHHHHHhCC---CCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccC
Confidence 3679999999999999999988763 36799999999999999999999988765 89999988876543 257
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+.+--. ..+...++.+.++|+|||++++
T Consensus 135 ~fD~ifiD~dk------------------------~~y~~~~~~~~~lL~~GGvii~ 167 (219)
T d2avda1 135 TFDVAVVDADK------------------------ENCSAYYERCLQLLRPGGILAV 167 (219)
T ss_dssp CEEEEEECSCS------------------------TTHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEeCCH------------------------HHHHHHHHHHHHHhcCCcEEEE
Confidence 89999996211 1256778888999999999998
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.34 E-value=7.3e-12 Score=99.63 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=87.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh-----cCC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR-----LAG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~-----~~~ 114 (256)
.+++|||+||++|.-++.++..+. ++++++.+|.+++..+.|++++...|+.. +++.+++.+.++.. ..+
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~---~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~ 135 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIP---EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 135 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSC---TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred CCCcEEEecchhhhhHHHHHhhCC---CCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCC
Confidence 679999999999999999998864 35799999999999999999999998865 89999998887654 246
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+.+-- + ..+...++.+.++|+|||++++
T Consensus 136 ~fD~iFiDa~----------------------k--~~y~~~~e~~~~ll~~gGiii~ 168 (227)
T d1susa1 136 SYDFIFVDAD----------------------K--DNYLNYHKRLIDLVKVGGVIGY 168 (227)
T ss_dssp CBSEEEECSC----------------------S--TTHHHHHHHHHHHBCTTCCEEE
T ss_pred ceeEEEeccc----------------------h--hhhHHHHHHHHhhcCCCcEEEE
Confidence 8999999621 1 1167888899999999999998
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=1.7e-12 Score=111.51 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-------Ccc
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-------VHA 97 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-------~~~ 97 (256)
.-++..+++.+. -+++.+|||||||+|.+++.+|.. .+..+++|+|+++.+++.|+++....+ ...
T Consensus 202 ~~~i~~Il~~l~---Lkpgd~fLDLGCG~G~~vl~aA~~----~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~ 274 (406)
T d1u2za_ 202 PNFLSDVYQQCQ---LKKGDTFMDLGSGVGNCVVQAALE----CGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRL 274 (406)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEESCTTSHHHHHHHHH----HCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred HHHHHHHHHHhC---CCCCCEEEeCCCCCcHHHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 334455555543 378999999999999999988887 344589999999999999999887542 111
Q ss_pred ---eE-EEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 98 ---DL-INTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 98 ---~~-~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.+ ..++...... ...-..+|+|++|-- .+. ..+...+.++.+.|||||+++..
T Consensus 275 ~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~-~f~---------------------~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 275 NNVEFSLKKSFVDNNRVAELIPQCDVILVNNF-LFD---------------------EDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp CCEEEEESSCSTTCHHHHHHGGGCSEEEECCT-TCC---------------------HHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccceeeeeechhhccccccccccceEEEEecc-cCc---------------------hHHHHHHHHHHHhcCCCcEEEEe
Confidence 11 2333332211 111245789988621 111 12678889999999999999874
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=1.4e-10 Score=96.55 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=109.8
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.+.....+..++..++. .+++.+|||+|+|.|.-+..++..+. .++.+++.|+++..++.+++++.+.+.
T Consensus 96 G~~~vQD~aS~l~~~~l~------~~~g~~vlD~CAapGgKt~~l~~~~~---~~~~i~a~d~~~~r~~~l~~~~~r~~~ 166 (313)
T d1ixka_ 96 GLIYIQEASSMYPPVALD------PKPGEIVADMAAAPGGKTSYLAQLMR---NDGVIYAFDVDENRLRETRLNLSRLGV 166 (313)
T ss_dssp TSEEECCHHHHHHHHHHC------CCTTCEEEECCSSCSHHHHHHHHHTT---TCSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred ceEEEecccccchhhccc------CCccceeeecccchhhhhHhhhhhcc---cccceeeeccCHHHHHHHHHHHHHHHh
Confidence 344444445555554443 26889999999999999888888764 356899999999999999999999988
Q ss_pred cc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhccccCeEEE
Q 025207 96 HA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.+ .+...|.... +.....||.|++++|-.....- .+.+...|.-... -......++..+.++|||||+++
T Consensus 167 ~~i~~~~~d~~~~--~~~~~~fD~ILvDaPCSg~G~~---~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lV 241 (313)
T d1ixka_ 167 LNVILFHSSSLHI--GELNVEFDKILLDAPCTGSGTI---HKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILV 241 (313)
T ss_dssp CSEEEESSCGGGG--GGGCCCEEEEEEECCTTSTTTC---C--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hcccccccccccc--ccccccccEEEEccccccCCce---eeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEE
Confidence 76 5556665554 2235789999999997644332 2222222211111 11256678899999999999999
Q ss_pred EEEeCCCCH---HHHHHHHHHcCCc
Q 025207 171 LVTLTANDP---SQICLQMMEKGYA 192 (256)
Q Consensus 171 ~~~~~~~~~---~~~~~~~~~~g~~ 192 (256)
.++++.... ..+...+++.+++
T Consensus 242 YsTCSl~~eENE~VV~~~L~~~~~~ 266 (313)
T d1ixka_ 242 YSTCSLEPEENEFVIQWALDNFDVE 266 (313)
T ss_dssp EEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred EeeccCChHhHHHHHHHHHhcCCCE
Confidence 999876533 3455555655543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=99.22 E-value=6.8e-10 Score=88.34 Aligned_cols=145 Identities=11% Similarity=0.116 Sum_probs=108.4
Q ss_pred chHHHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-e
Q 025207 23 DSFALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-D 98 (256)
Q Consensus 23 ~~~~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~ 98 (256)
..+.+..++++.+..+. .....+|+|+|+|.|..++.++.. .|+.+++.+|.+..-+...+..+...++++ .
T Consensus 48 ~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~----~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~ 123 (239)
T d1xdza_ 48 KKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKIC----FPHLHVTIVDSLNKRITFLEKLSEALQLENTT 123 (239)
T ss_dssp HHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHH----CTTCEEEEEESCHHHHHHHHHHHHHHTCSSEE
T ss_pred HHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHh----CCCccceeecchHHHHHHHHHHHHHhCCCCcE
Confidence 35666667777664332 235689999999999999999987 788999999999999999999999999987 8
Q ss_pred EEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 99 LINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 99 ~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++.++.+.... ...++||+|++- +...+..+++.+..++++||.+++.- +..
T Consensus 124 i~~~R~E~~~~~~~~~~~~D~v~sR-------------------------Ava~l~~ll~~~~~~l~~~g~~i~~K-G~~ 177 (239)
T d1xdza_ 124 FCHDRAETFGQRKDVRESYDIVTAR-------------------------AVARLSVLSELCLPLVKKNGLFVALK-AAS 177 (239)
T ss_dssp EEESCHHHHTTCTTTTTCEEEEEEE-------------------------CCSCHHHHHHHHGGGEEEEEEEEEEE-CC-
T ss_pred EEeehhhhccccccccccceEEEEh-------------------------hhhCHHHHHHHHhhhcccCCEEEEEC-CCC
Confidence 888888776432 124689999982 11227889999999999999999854 444
Q ss_pred CHHHH---HHHHHHcCCcEEEEE
Q 025207 178 DPSQI---CLQMMEKGYAARIVV 197 (256)
Q Consensus 178 ~~~~~---~~~~~~~g~~~~~~~ 197 (256)
..+|+ .+.+...+++...+.
T Consensus 178 ~~~El~~a~~~~~~~~~~~~~v~ 200 (239)
T d1xdza_ 178 AEEELNAGKKAITTLGGELENIH 200 (239)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred hHHHHHHHHHHHHHcCCEEEEEE
Confidence 44444 445666677765443
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=3.2e-10 Score=93.57 Aligned_cols=149 Identities=14% Similarity=0.063 Sum_probs=99.1
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.+...+.+..++..++. ..++.+|||+|+|.|.-+..++..+. .+..|+++|+++..++.+++++.+.|+
T Consensus 74 G~~~~QD~sS~l~~~~L~------~~~g~~vLD~cAapGgKt~~la~l~~---~~~~i~a~d~~~~R~~~l~~~l~r~g~ 144 (293)
T d2b9ea1 74 GHLILQDRASCLPAMLLD------PPPGSHVIDACAAPGNKTSHLAALLK---NQGKIFAFDLDAKRLASMATLLARAGV 144 (293)
T ss_dssp TSEEECCTGGGHHHHHHC------CCTTCEEEESSCTTCHHHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cEEEEcCCcccccccccC------CCccceEEecccchhhHHHHHHHHhc---CCceEeeecCCHHHHHHHHHHHHhcCc
Confidence 444555555555555543 25889999999999999998888764 356899999999999999999999998
Q ss_pred cc-eEEEcchhhchhhh-cCCCccEEEECCCCCCCCCcccccccchhhhc--CCCCc----HHHHHHHHHHHhhccccCe
Q 025207 96 HA-DLINTDIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWA--GGENG----RAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~~~LkpgG 167 (256)
.+ .+...|........ ..++||.|++++|-..... .++.+...|. ..... ......++..+. .|++||
T Consensus 145 ~~~~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~---~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG 220 (293)
T d2b9ea1 145 SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGM---PSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQ 220 (293)
T ss_dssp CSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC---------------------CCHHHHHHHHHHHHHHHT-TCTTCC
T ss_pred cceeeeehhhhhhcccccccceeeEEeecCcccchhh---hcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hccccc
Confidence 86 78888877653321 2367999999999654332 1122222221 11111 113345566666 479999
Q ss_pred EEEEEEeCCC
Q 025207 168 WLYLVTLTAN 177 (256)
Q Consensus 168 ~l~~~~~~~~ 177 (256)
+++.++++..
T Consensus 221 ~lvYsTCSl~ 230 (293)
T d2b9ea1 221 RLVYSTCSLC 230 (293)
T ss_dssp EEEEEESCCC
T ss_pred EEEEeeccCC
Confidence 9999998765
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.16 E-value=4.1e-10 Score=90.46 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=96.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
....+|||||||+|.+++.+++. +|+.+++.+|+ |..++. .+. ..+++.+|+.+..+ ..|+
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~vi~~-------~~~~~ri~~~~gd~~~~~p-----~~D~ 142 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISK----YPLIKGINFDL-PQVIEN-------APPLSGIEHVGGDMFASVP-----QGDA 142 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTT-------CCCCTTEEEEECCTTTCCC-----CEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHH----CCCCeEEEecc-hhhhhc-------cCCCCCeEEecCCcccccc-----cceE
Confidence 34589999999999998888887 89999999997 444432 222 23888999876532 3499
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
+++.-..+..++ +....+|+.+++.|+|||++++.....
T Consensus 143 ~~l~~vLh~~~d-------------------e~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~ 203 (244)
T d1fp1d2 143 MILKAVCHNWSD-------------------EKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI 203 (244)
T ss_dssp EEEESSGGGSCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH
T ss_pred EEEehhhhhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHh
Confidence 988655444333 235688999999999999999977311
Q ss_pred ------CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025207 177 ------NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 177 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
+..++..+++++.||+...+..... ..+.++++.|
T Consensus 204 ~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~--~~~~viE~~K 244 (244)
T d1fp1d2 204 TVGGRERTEKQYEKLSKLSGFSKFQVACRAF--NSLGVMEFYK 244 (244)
T ss_dssp HHSCCCEEHHHHHHHHHHTTCSEEEEEEEET--TTEEEEEEEC
T ss_pred hCCCcCCCHHHHHHHHHHcCCCceEEEecCC--CCEEEEEEeC
Confidence 0245778999999999877664322 2446777654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.11 E-value=2.8e-10 Score=94.53 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=82.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--C----CcceEEEcchhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--N----VHADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~----~~~~~~~~d~~~~~~~~~~~ 114 (256)
..+++||.+|.|.|..+.++++. .+..+|+++|++++.++.|++.+... + ...+++.+|+.+.+.. .++
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~----~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~ 150 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKH----PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEE 150 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS----TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCC
T ss_pred CCcceEEEeCCCchHHHHHHHhc----CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh-cCC
Confidence 57799999999999975444433 55679999999999999999987542 1 1238999999998765 357
Q ss_pred CccEEEECCC--CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPP--YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+|+++.+ +...... ..+ ....+++.+.+.|+|||++++-.
T Consensus 151 ~yDvIi~D~~dp~~~~~~~--------~~L--------~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 151 RYDVVIIDLTDPVGEDNPA--------RLL--------YTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp CEEEEEEECCCCBSTTCGG--------GGG--------SSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccEEEEeCCCcccccchh--------hhh--------hhHHHHHHHHHhcCCCceEEEec
Confidence 8999998753 3211110 001 13578999999999999998754
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=99.08 E-value=2.6e-10 Score=91.23 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=94.5
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccC-----------------------
Q 025207 13 SHPEVYEPCDDSFALVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEV----------------------- 68 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~la~~l~~~~----------------------- 68 (256)
+|..-+.|..... ++..++.....+. -..+..++|+.||+|++.++++.+....-
T Consensus 21 L~~~~~~~~~~~~-Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l 99 (249)
T d1o9ga_ 21 LHSAPGYPAFPVR-LATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL 99 (249)
T ss_dssp SCCBTTBCCCCHH-HHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred cccCCCCCCcchH-HHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHH
Confidence 4445566666544 3333333321111 14567899999999999999988643221
Q ss_pred -------------CCceEEEEeCCHHHHHHH---HHHHHHcCCcc--eEEEcchhhchhh--h-cCCCccEEEECCCCCC
Q 025207 69 -------------PGVQYIATDINPYAVEVT---RKTLEAHNVHA--DLINTDIASGLEK--R-LAGLVDVMVVNPPYVP 127 (256)
Q Consensus 69 -------------~~~~v~giD~~~~~i~~a---~~~~~~~~~~~--~~~~~d~~~~~~~--~-~~~~fD~Ii~npP~~~ 127 (256)
....++|.|+++.+++.| ++|+...|+.. .+...|+++..+. . .....++||+||||..
T Consensus 100 ~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGE 179 (249)
T d1o9ga_ 100 SPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGE 179 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGG
T ss_pred HHHHHHHHhccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccc
Confidence 113578999999999988 46888888765 7888888765431 1 2456899999999975
Q ss_pred CCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 128 TPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.-..+ +......+..+...+.+.|.....++++
T Consensus 180 Rl~~~------------~~~~~~~~~~~~~~l~~~~p~~s~~~it 212 (249)
T d1o9ga_ 180 RTHWE------------GQVPGQPVAGLLRSLASALPAHAVIAVT 212 (249)
T ss_dssp SSSSS------------SCCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccccc------------ccchHHHHHHHHHHHHccCCCCcEEEEe
Confidence 44321 1112344677788888888555555553
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.05 E-value=6.6e-10 Score=86.12 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=70.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcc----cCCCceEEEEeCCHHHHHHHHHHHH--------------Hc----CCc--
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQ----EVPGVQYIATDINPYAVEVTRKTLE--------------AH----NVH-- 96 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~----~~~~~~v~giD~~~~~i~~a~~~~~--------------~~----~~~-- 96 (256)
.++.+|+++|||+|.-+..+|..+.+ .....+|+|+|+++.+++.|++... .. +..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 46789999999999866555554332 2235689999999999999975321 10 000
Q ss_pred c------------eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025207 97 A------------DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 97 ~------------~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
. .+...+..... ....+.||+|+|--.+...+ ......+++.+++.|+
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~fDvI~CRNVLiYf~-------------------~~~~~~vl~~l~~~L~ 162 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQ-YNVPGPFDAIFCRNVMIYFD-------------------KTTQEDILRRFVPLLK 162 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSS-CCCCCCEEEEEECSSGGGSC-------------------HHHHHHHHHHHGGGEE
T ss_pred ceeehHHHHHHHHHHhhhhccccc-cCCCCCccEEEeehhHHhcC-------------------HHHHHHHHHHHHHHhC
Confidence 0 12222222221 11247899999943332211 1236789999999999
Q ss_pred cCeEEEE
Q 025207 165 KRGWLYL 171 (256)
Q Consensus 165 pgG~l~~ 171 (256)
|||.|++
T Consensus 163 pGG~L~l 169 (193)
T d1af7a2 163 PDGLLFA 169 (193)
T ss_dssp EEEEEEE
T ss_pred CCcEEEE
Confidence 9999887
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=1.3e-09 Score=89.43 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=81.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||-+|.|.|..+.++++. .+..+|+++|+++++++.|++.+..+. . ..+++.+|+...+.. .+++
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~----~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~ 162 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKH----DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK-FKNE 162 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTS----TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-CSSC
T ss_pred CCCceEEEecCCchHHHHHHHhc----CCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc-CCCC
Confidence 46799999999999975444433 455689999999999999999776532 2 238999999998765 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
||+|+++.+-...... ..+ ....+++.+.+.|+|||++++-..+
T Consensus 163 yDvIi~D~~dp~~~~~--------~~L--------~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 163 FDVIIIDSTDPTAGQG--------GHL--------FTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEEEEEEC------------------C--------CSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCEEEEcCCCCCcCch--------hhh--------ccHHHHHHHHhhcCCCcEEEEecCC
Confidence 9999997642111000 000 1368899999999999999985543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.01 E-value=2.6e-09 Score=87.70 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=91.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----CcceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||=+|-|.|..+.++.+. .+-.+++++|++++.++.|++.+..+. ...+++.+|.........+++
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~----~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~ 154 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARH----ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 154 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCcceEEecCCchHHHHHHHhc----ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccC
Confidence 46789999999999975544432 454589999999999999999765432 223899999998876544578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHH---HHHHHHHHcCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPS---QICLQMMEKGY 191 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~---~~~~~~~~~g~ 191 (256)
||+|+.+.+-.. .. ...+ ....+++.+.+.|+|||++++-..+.. ... .+.+.+.+...
T Consensus 155 yDvIi~D~~dp~-~~--------~~~L--------~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~ 217 (290)
T d1xj5a_ 155 YDAVIVDSSDPI-GP--------AKEL--------FEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFK 217 (290)
T ss_dssp EEEEEECCCCTT-SG--------GGGG--------GSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred ccEEEEcCCCCC-Cc--------chhh--------CCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcc
Confidence 999999864211 00 0011 246889999999999999998654432 222 34444555543
Q ss_pred cE
Q 025207 192 AA 193 (256)
Q Consensus 192 ~~ 193 (256)
..
T Consensus 218 ~~ 219 (290)
T d1xj5a_ 218 GS 219 (290)
T ss_dssp SC
T ss_pred cc
Confidence 33
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.99 E-value=3.1e-09 Score=86.70 Aligned_cols=132 Identities=13% Similarity=0.117 Sum_probs=88.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----------CcceEEEcchhhchh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----------VHADLINTDIASGLE 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----------~~~~~~~~d~~~~~~ 109 (256)
.++++||-+|+|.|..+.++.+ ++..+|+++|+++++++.|++.+..+. ...+++.+|+...+.
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-----~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~ 145 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-----HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 145 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-----SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHH-----hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence 5789999999999997544432 344589999999999999998653321 123899999988875
Q ss_pred hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-CCHHHH---HHH
Q 025207 110 KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-NDPSQI---CLQ 185 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~---~~~ 185 (256)
. .++||+|+++.+-...+.. .-....+++.+.+.|+|||++++-..+. .....+ .+.
T Consensus 146 ~--~~~yDvIi~D~~~~~~~~~-----------------~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~t 206 (276)
T d1mjfa_ 146 N--NRGFDVIIADSTDPVGPAK-----------------VLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKE 206 (276)
T ss_dssp H--CCCEEEEEEECCCCC----------------------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHH
T ss_pred c--cCCCCEEEEeCCCCCCCcc-----------------cccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHH
Confidence 4 5789999998753211110 0013578999999999999998855332 223333 344
Q ss_pred HHHcCCcEEEEE
Q 025207 186 MMEKGYAARIVV 197 (256)
Q Consensus 186 ~~~~g~~~~~~~ 197 (256)
+.+. |.....+
T Consensus 207 l~~~-F~~v~~y 217 (276)
T d1mjfa_ 207 MKKV-FDRVYYY 217 (276)
T ss_dssp HHHH-CSEEEEE
T ss_pred HHhh-CCeeEEE
Confidence 4444 5544443
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.98 E-value=8.4e-10 Score=87.99 Aligned_cols=90 Identities=19% Similarity=0.147 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
-+++.+++... ..++++|||||||+|.+|..++.. +.+++++|+++.+++.++++.... .+..++++|+.
T Consensus 8 ~i~~~iv~~~~---~~~~d~VlEIGpG~G~LT~~Ll~~------~~~v~avE~D~~l~~~l~~~~~~~-~n~~i~~~D~l 77 (235)
T d1qama_ 8 HNIDKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTENKLVDH-DNFQVLNKDIL 77 (235)
T ss_dssp HHHHHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHTTTC-CSEEEECCCGG
T ss_pred HHHHHHHHhcC---CCCCCeEEEECCCchHHHHHHHhC------cCceEEEeeccchHHHHHHHhhcc-cchhhhhhhhh
Confidence 34455665543 358999999999999999998876 348999999999999988865422 23489999998
Q ss_pred hchhhhcCCCccEEEECCCCCC
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVP 127 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~ 127 (256)
+...+ ......|++|.||+.
T Consensus 78 ~~~~~--~~~~~~vv~NLPYnI 97 (235)
T d1qama_ 78 QFKFP--KNQSYKIFGNIPYNI 97 (235)
T ss_dssp GCCCC--SSCCCEEEEECCGGG
T ss_pred hcccc--ccccceeeeeehhhh
Confidence 87322 234567889999964
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2.9e-09 Score=87.10 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=81.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----CcceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||-+|-|.|..+.++.+. .+..+++++|+++++++.|++.+..+. ...+++.+|+...+.. .+++
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~----~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~ 151 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKH----PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDA 151 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSC
T ss_pred cCcCeEEEeCCCchHHHHHHHHc----CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc-CCCC
Confidence 46799999999999975444432 455699999999999999999775431 2238999999988765 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
||+|+++++-...+ . ..-....+++.+.+.|+|||++++-..+.
T Consensus 152 yDvIi~D~~~p~~~-~----------------~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 152 FDVIITDSSDPMGP-A----------------ESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EEEEEEECC----------------------------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCEEEEcCCCCCCc-c----------------cccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 99999986321100 0 01124578999999999999999865543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.94 E-value=7.6e-09 Score=84.15 Aligned_cols=134 Identities=19% Similarity=0.185 Sum_probs=91.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||-+|-|.|..+.++.+. .+..+|+.+|++++.++.|++.+..+. . ..+++.+|+...+.. .+.+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~----~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~-~~~~ 148 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKH----PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQ 148 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTC----TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-CCSC
T ss_pred CCcceEEecCCCCcHHHHHHHhc----CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh-cCCC
Confidence 46799999999999975544432 445699999999999999999875432 2 238999999888765 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHH---HHHHHHHHcCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPS---QICLQMMEKGY 191 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~---~~~~~~~~~g~ 191 (256)
||+|+.+++-...+.. .+ ....+.+.+.+.|+|+|+++.-..+.. ..+ .+.+.+++. |
T Consensus 149 yDvIi~D~~~p~~~~~---------~L--------~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~-F 210 (274)
T d1iy9a_ 149 YDVIMVDSTEPVGPAV---------NL--------FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-F 210 (274)
T ss_dssp EEEEEESCSSCCSCCC---------CC--------STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-C
T ss_pred CCEEEEcCCCCCCcch---------hh--------ccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh-c
Confidence 9999998752211110 01 135789999999999999998543322 233 333444433 5
Q ss_pred cEEEEE
Q 025207 192 AARIVV 197 (256)
Q Consensus 192 ~~~~~~ 197 (256)
.....+
T Consensus 211 ~~v~~y 216 (274)
T d1iy9a_ 211 PITKLY 216 (274)
T ss_dssp SEEEEE
T ss_pred CceEEE
Confidence 554444
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.93 E-value=8.5e-09 Score=82.59 Aligned_cols=133 Identities=16% Similarity=0.152 Sum_probs=90.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...+|+|+|||+|.+++.+++. +|+.+++++|+.+. ++.+.. .....++.+|+.+..+ ..|+++.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dlp~v-i~~~~~-----~~r~~~~~~d~~~~~P-----~ad~~~l 145 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSK----YPTIKGINFDLPHV-IEDAPS-----YPGVEHVGGDMFVSIP-----KADAVFM 145 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHH----CTTSEEEEEECTTT-TTTCCC-----CTTEEEEECCTTTCCC-----CCSCEEC
T ss_pred CCcEEEEecCCCcHHHHHHHHH----CCCCeEEEcccHHh-hhhccc-----CCceEEecccccccCC-----CcceEEE
Confidence 4579999999999999888887 99999999998543 322111 1123788889876543 2355555
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-----C--------------------
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-----A-------------------- 176 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----~-------------------- 176 (256)
.--.+..++ .....+++++.+.|+|||+++++... .
T Consensus 146 ~~vlh~~~d-------------------~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~ 206 (243)
T d1kyza2 146 KWICHDWSD-------------------EHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNP 206 (243)
T ss_dssp SSSSTTSCH-------------------HHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCS
T ss_pred EEEeecCCH-------------------HHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCC
Confidence 333332222 23678899999999999999886521 0
Q ss_pred ----CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025207 177 ----NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 177 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
+..++..+++++.||+...++.... ...++|+
T Consensus 207 ~g~ert~~e~~~ll~~AGf~~vkv~~~~~---~~~viE~ 242 (243)
T d1kyza2 207 GGKERTQKEFEDLAKGAGFQGFKVHCNAF---NTYIMEF 242 (243)
T ss_dssp SCCCEEHHHHHHHHHHHCCSCEEEEEEET---TEEEEEE
T ss_pred CCCcCCHHHHHHHHHHcCCCcEEEEEeCC---CCEEEEe
Confidence 0245788899999999887775533 3355554
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.93 E-value=2.9e-09 Score=87.87 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=79.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||-+|-|.|..+.++.+. .+-.+|+.+|+++++++.|++.+..+. . ..+++.+|+...+.. .+.+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~----~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~ 179 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKH----ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNE 179 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTC----TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTC
T ss_pred CCCCeEEEeCCCchHHHHHHHHc----CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCC
Confidence 46799999999999975554443 444589999999999999999765432 1 228999999988765 4678
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
||+|+++.+-...+. ..-....+++.+.+.|+|||+++.-..+
T Consensus 180 yDvII~D~~dp~~~~-----------------~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 180 FDVIITDSSDPVGPA-----------------ESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp EEEEEECCC------------------------------HHHHHHHHEEEEEEEEEECCC
T ss_pred CCEEEEcCCCCCCcc-----------------hhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 999999865211110 0112468899999999999999985543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.92 E-value=1.5e-08 Score=81.11 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=93.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...+|+|+|||+|.+++.+++. +|+.+++..|. |..++.+.. .-..+++.+|+.+.. ..+|++++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~vi~~~~~-----~~rv~~~~gD~f~~~-----p~aD~~~l 144 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICET----FPKLKCIVFDR-PQVVENLSG-----SNNLTYVGGDMFTSI-----PNADAVLL 144 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCC-----BTTEEEEECCTTTCC-----CCCSEEEE
T ss_pred CceEEEEecCCccHHHHHHHHh----CCCCeEEEecC-HHHHHhCcc-----cCceEEEecCcccCC-----CCCcEEEE
Confidence 4578999999999998888887 99999999998 554443211 112389999987752 25799998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC---eEEEEEEeCC----------------------
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR---GWLYLVTLTA---------------------- 176 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~---------------------- 176 (256)
.-.++..++. ....+|+++++.|+|| |+++++....
T Consensus 145 ~~vLHdw~d~-------------------~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~ 205 (244)
T d1fp2a2 145 KYILHNWTDK-------------------DCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC 205 (244)
T ss_dssp ESCGGGSCHH-------------------HHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG
T ss_pred EeecccCChH-------------------HHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh
Confidence 6554443332 2568899999999998 7777754210
Q ss_pred -----CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025207 177 -----NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 177 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
+..++..+++++.||+...+.+... ...+++.
T Consensus 206 ~~G~ert~~e~~~ll~~AGf~~~~i~~~~~---~~svIE~ 242 (244)
T d1fp2a2 206 LNGKERNEEEWKKLFIEAGFQHYKISPLTG---FLSLIEI 242 (244)
T ss_dssp GTCCCEEHHHHHHHHHHTTCCEEEEEEEET---TEEEEEE
T ss_pred CCCcCCCHHHHHHHHHHcCCceEEEEECCC---CeEEEEE
Confidence 1245788899999999887766543 3455554
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.90 E-value=2.6e-09 Score=81.67 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=90.0
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh---hhcCCCc
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE---KRLAGLV 116 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~f 116 (256)
.+++..++|..+|.|..+..+.+. +++|+|+|.++.+++.+++. ..-...+++.++.+... ....+++
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~------~~~viaiD~D~~ai~~a~~~---~~~~~~~~~~~f~~~~~~l~~~~~~~v 86 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKGL---HLPGLTVVQGNFRHLKRHLAALGVERV 86 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHT---CCTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcc------cCcEEEEhhhhhHHHHHhhc---cccceeEeehHHHHHHHHHHHcCCCcc
Confidence 368999999999999987666543 45999999999999988763 12223777777655432 2334689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCC
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGY 191 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~ 191 (256)
|.|+.+..+... .+....++.......|....++|++||+++++.........+.+.+++.++
T Consensus 87 dgIl~DLGvSs~------------qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~ 149 (182)
T d1wg8a2 87 DGILADLGVSSF------------HLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGL 149 (182)
T ss_dssp EEEEEECSCCHH------------HHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCS
T ss_pred CEEEEEccCCHH------------HhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccc
Confidence 999998654211 011122345567788999999999999999877533323346666666554
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.87 E-value=2e-08 Score=85.14 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=79.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc----------------eEEEcchh
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA----------------DLINTDIA 105 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~----------------~~~~~d~~ 105 (256)
++.+|||..||+|..++..++.. +...|++.|+|+.+++.+++|++.|+... .+.+.|+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~----~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~ 120 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALET----PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN 120 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS----SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhC----CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh
Confidence 57899999999999999777763 33489999999999999999999997642 45556665
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+.. ....||+|..+| |.. ...+++.+.+.++.||.+.+..
T Consensus 121 ~~~~~-~~~~fDvIDiDP-fGs------------------------~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 121 RLMAE-RHRYFHFIDLDP-FGS------------------------PMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HHHHH-STTCEEEEEECC-SSC------------------------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhHh-hcCcCCcccCCC-CCC------------------------cHHHHHHHHHHhccCCEEEEEe
Confidence 54433 246799999996 431 2467888888899999999954
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.78 E-value=1.6e-10 Score=92.73 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=67.7
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025207 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
++.+.+.+. ..++.+|||||||+|.+|..+++. +.+|+++|+++.+++.++++.... .+..++++|+.+.
T Consensus 18 i~kIv~~~~---~~~~d~VLEIGpG~G~LT~~L~~~------~~~v~aIE~D~~l~~~l~~~~~~~-~n~~ii~~D~l~~ 87 (245)
T d1yuba_ 18 LNQIIKQLN---LKETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSEKLKLN-TRVTLIHQDILQF 87 (245)
T ss_dssp HHHHHHHCC---CCSSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSCTTTTC-SEEEECCSCCTTT
T ss_pred HHHHHHhcC---CCCCCeEEEECCCccHHHHHHHhh------cCceeEeeecccchhhhhhhhhhc-cchhhhhhhhhcc
Confidence 445555543 257899999999999999988886 348999999999998877654321 1338999999886
Q ss_pred hhhhcCCCccEEEECCCCCCCC
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
++....++.|++|.||+..+
T Consensus 88 --~~~~~~~~~vv~NLPY~Ist 107 (245)
T d1yuba_ 88 --QFPNKQRYKIVGNIPYHLST 107 (245)
T ss_dssp --TCCCSSEEEEEEECCSSSCH
T ss_pred --ccccceeeeEeeeeehhhhH
Confidence 33346778899999997543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.1e-08 Score=83.07 Aligned_cols=88 Identities=19% Similarity=0.316 Sum_probs=68.7
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcc
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d 103 (256)
-+++.+.+... ..++..|||+|+|.|.+|..+++. +.+++++|+++.+++..++.+...... .+++.+|
T Consensus 8 ~i~~kIv~~~~---~~~~d~VlEIGPG~G~LT~~Ll~~------~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D 78 (278)
T d1zq9a1 8 LIINSIIDKAA---LRPTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGD 78 (278)
T ss_dssp HHHHHHHHHTC---CCTTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESC
T ss_pred HHHHHHHHHhC---CCCCCEEEEECCCchHHHHHHHhc------CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHH
Confidence 34555655543 257899999999999999998886 348999999999999999887655432 2899999
Q ss_pred hhhchhhhcCCCccEEEECCCCC
Q 025207 104 IASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
+..... ..++.||+|.||+
T Consensus 79 ~l~~~~----~~~~~vV~NLPY~ 97 (278)
T d1zq9a1 79 VLKTDL----PFFDTCVANLPYQ 97 (278)
T ss_dssp TTTSCC----CCCSEEEEECCGG
T ss_pred Hhhhhh----hhhhhhhcchHHH
Confidence 987632 3467899999996
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=2.6e-07 Score=70.17 Aligned_cols=135 Identities=13% Similarity=0.161 Sum_probs=88.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchh------hhcC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLE------KRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~------~~~~ 113 (256)
+++.+|||+||+.|.++..+.+.+. ....++++|+.+- ..++. .++++|+.+... ....
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~---~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIG---GKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHC---TTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEeccCCcceEEEEeecc---ccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccC
Confidence 5789999999999999998887654 3468999998762 12333 788888765432 1234
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc-
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA- 192 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~- 192 (256)
.++|+|+++.....+..... .+ ..........+..+.++|++||.+++-........++...+... |.
T Consensus 87 ~~~DlVlSD~ap~~sg~~~~-d~---------~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~-F~~ 155 (180)
T d1ej0a_ 87 SKVQVVMSDMAPNMSGTPAV-DI---------PRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTK 155 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHH-HH---------HHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEE
T ss_pred cceeEEEecccchhcccchh-HH---------HHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhh-cCE
Confidence 67999999865433222110 00 01122345567778899999999999776655566777777655 44
Q ss_pred EEEEEecC
Q 025207 193 ARIVVQRS 200 (256)
Q Consensus 193 ~~~~~~~~ 200 (256)
+..+.+..
T Consensus 156 V~~~KP~a 163 (180)
T d1ej0a_ 156 VKVRKPDS 163 (180)
T ss_dssp EEEECCTT
T ss_pred EEEECCCC
Confidence 33344433
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=4.3e-08 Score=78.60 Aligned_cols=92 Identities=11% Similarity=0.014 Sum_probs=65.1
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025207 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.+.+.+. ..+++.|||||||+|.+|..+++. +.+++++|+++.+++.+++..... .+..++.+|+.
T Consensus 8 ~~~~~Iv~~~~---~~~~d~vlEIGpG~G~LT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~~~-~~~~ii~~D~l 77 (252)
T d1qyra_ 8 FVIDSIVSAIN---PQKGQAMVEIGPGLAALTEPVGER------LDQLTVIELDRDLAARLQTHPFLG-PKLTIYQQDAM 77 (252)
T ss_dssp HHHHHHHHHHC---CCTTCCEEEECCTTTTTHHHHHTT------CSCEEEECCCHHHHHHHHTCTTTG-GGEEEECSCGG
T ss_pred HHHHHHHHhcC---CCCCCEEEEECCCchHHHHHHHcc------CCceEEEEeccchhHHHHHHhhhc-cchhHHhhhhh
Confidence 34555655543 257899999999999999887765 348999999999999887643221 13389999998
Q ss_pred hchhhh-c--CCCccEEEECCCCCC
Q 025207 106 SGLEKR-L--AGLVDVMVVNPPYVP 127 (256)
Q Consensus 106 ~~~~~~-~--~~~fD~Ii~npP~~~ 127 (256)
+..... . .+..-.|++|.||+.
T Consensus 78 ~~~~~~~~~~~~~~~~vvgNlPY~I 102 (252)
T d1qyra_ 78 TFNFGELAEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp GCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred hhcccccccccCCCeEEEecchHHH
Confidence 753221 1 123347889999974
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.33 E-value=5.6e-07 Score=70.98 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=67.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~I 119 (256)
++++|||+|++.|.-++.++..+....++++++++|+++......... .-..+++.+|..+.. .......+|+|
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~----~~~I~~i~gDs~~~~~~~~l~~~~~dlI 155 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD----MENITLHQGDCSDLTTFEHLREMAHPLI 155 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG----CTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc----ccceeeeecccccHHHHHHHHhcCCCEE
Confidence 689999999999998887777765545678999999987654322111 112378888865432 22334568988
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+.+--+. .......+ ....+|++||++++
T Consensus 156 fID~~H~---------------------~~~v~~~~--~~~~lLk~GG~iIv 184 (232)
T d2bm8a1 156 FIDNAHA---------------------NTFNIMKW--AVDHLLEEGDYFII 184 (232)
T ss_dssp EEESSCS---------------------SHHHHHHH--HHHHTCCTTCEEEE
T ss_pred EEcCCcc---------------------hHHHHHHH--HHhcccCcCCEEEE
Confidence 8853211 01112222 24579999999998
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.25 E-value=1.5e-06 Score=68.88 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=65.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----------cceEEEcchhhchhhh
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----------HADLINTDIASGLEKR 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----------~~~~~~~d~~~~~~~~ 111 (256)
...+|||.-||.|..++.++.. +++|+++|-++......++++.+... ..+++++|..+.+...
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~------G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~ 161 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred CCCEEEECCCcccHHHHHHHhC------CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc
Confidence 3458999999999999999887 56899999999998888877765321 1289999998887653
Q ss_pred cCCCccEEEECCCCCCCC
Q 025207 112 LAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~ 129 (256)
..+||+|+.+|+|-...
T Consensus 162 -~~~~DvIYlDPMFp~~~ 178 (250)
T d2oyra1 162 -TPRPQVVYLDPMFPHKQ 178 (250)
T ss_dssp -SSCCSEEEECCCCCCCC
T ss_pred -CCCCCEEEECCCCcccc
Confidence 56799999999996443
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.96 E-value=1.2e-05 Score=63.59 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=61.0
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++++|..+.+....++++|+|+++|||......-.. ...... =...+...+.++.++|+|+|.+++... ..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~-~~~~~~------y~~~~~~~~~e~~rvLk~~g~~~~~~~-~~ 77 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDS-FDSHNE------FLAFTYRWIDKVLDKLDKDGSLYIFNT-PF 77 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGC-CSSHHH------HHHHHHHHHHHHHHHEEEEEEEEEEEC-HH
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcC-CCCHHH------HHHHHHHHHHHhhhccccCcccccccC-ch
Confidence 7999999998888778999999999999754321100 000000 012455678899999999999887443 23
Q ss_pred CHHHHHHHHHHcCCcEE
Q 025207 178 DPSQICLQMMEKGYAAR 194 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~ 194 (256)
....+...+.+.||...
T Consensus 78 ~~~~~~~~~~~~g~~~~ 94 (256)
T d1g60a_ 78 NCAFICQYLVSKGMIFQ 94 (256)
T ss_dssp HHHHHHHHHHHTTCEEE
T ss_pred hhhhhhhhhhcccceee
Confidence 34456777888888754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.64 E-value=0.00015 Score=57.70 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=60.1
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA- 176 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~- 176 (256)
.++.+|..+.+..+.++++|+|+++|||...-.. +.....-.+.+...+.++.++|||+|.+++.....
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~----------~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~ 75 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLAD----------WDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQY 75 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGG----------GGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCC
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCccc----------ccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccc
Confidence 5788999999888888999999999999753221 11111223456778899999999999999855321
Q ss_pred -------CCHHHHHHHHHHcCCcEE
Q 025207 177 -------NDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 177 -------~~~~~~~~~~~~~g~~~~ 194 (256)
.....+...+...++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (279)
T d1eg2a_ 76 QGEAGSGDLISIISHMRQNSKMLLA 100 (279)
T ss_dssp CCCTTBCCHHHHHHHHHHHCCCEEE
T ss_pred cccccccchhhHHHHHHhccCceee
Confidence 112344556667777654
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.59 E-value=0.0001 Score=58.03 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
...|++.++... ..++..|||+.||+|+.++++.++ +-+.+|+|++++.++.|++++.
T Consensus 198 P~~L~~~lI~~~----s~~gd~VlDpF~GSGTT~~aa~~~------~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 198 PRDLIERIIRAS----SNPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CHHHHHHHHHHH----CCTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHh----CCCCCEEEECCCCchHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHc
Confidence 356677776665 368999999999999988776665 3489999999999999999875
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.56 E-value=0.0032 Score=50.69 Aligned_cols=151 Identities=14% Similarity=0.090 Sum_probs=90.0
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+|||+.||.|.+.+.+.+. +-+ .+.++|+++.+++..+.|. +..++.+|+.+..... -..+|+++..||
T Consensus 2 k~~~lF~G~Gg~~~gl~~a----G~~-~~~a~e~d~~a~~~~~~N~-----~~~~~~~Di~~~~~~~-~~~~dll~~g~P 70 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA----GFR-IICANEYDKSIWKTYESNH-----SAKLIKGDISKISSDE-FPKCDGIIGGPP 70 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH----TCE-EEEEEECCHHHHHHHHHHC-----CSEEEESCTTTSCGGG-SCCCSEEEECCC
T ss_pred eEEEeCcCcCHHHHHHHHC----CCE-EEEEEeCCHHHHHHHHHHC-----CCCCccCChhhCCHhH-cccccEEeeccc
Confidence 6999999999988776654 222 4679999999998877764 3467888988764432 246899999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCcEEEEE-
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYAARIVV- 197 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~~~~~~- 197 (256)
-...+........ .++++ .....+++ +.+.++|.-+++=..+... ....+...+...||.+....
T Consensus 71 Cq~fS~ag~~~g~------~d~r~-~l~~~~~~-~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vl 142 (324)
T d1dcta_ 71 CQSWSEGGSLRGI------DDPRG-KLFYEYIR-ILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILL 142 (324)
T ss_dssp CTTTSSSSCCCCS------SSHHH-HHHHHHHH-HHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccccccc------ccccc-chHHHHHH-HHHhhCCceeeccccccccccccchhhHHHHhHHhhCCCccceeee
Confidence 8766553211100 01111 12223333 4556788644443222221 12344555666677654432
Q ss_pred -e----cCCCCccEEEEEEEec
Q 025207 198 -Q----RSTEEENLHIIKFWRD 214 (256)
Q Consensus 198 -~----~~~~~~~~~l~~~~~~ 214 (256)
. ..+..++++++...++
T Consensus 143 na~~~GvPQ~R~R~fiv~~r~~ 164 (324)
T d1dcta_ 143 NANDYGVAQDRKRVFYIGFRKE 164 (324)
T ss_dssp EGGGGTCSBCCEEEEEEEEEGG
T ss_pred ecccccCchhhceeeEeeecCC
Confidence 2 2345677777766654
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.50 E-value=0.0002 Score=58.84 Aligned_cols=77 Identities=9% Similarity=0.038 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhcc---cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Q 025207 25 FALVDALLADRIN---LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN 101 (256)
Q Consensus 25 ~~l~~~l~~~~~~---~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~ 101 (256)
.-+++.+++.+.- ....++..|||+|.|.|.+|..+..... + .+++++|+++..++..++... +-+..+++
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~---~-~~v~~iE~D~~~~~~L~~~~~--~~~~~ii~ 96 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC---P-RQYSLLEKRSSLYKFLNAKFE--GSPLQILK 96 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC---C-SEEEEECCCHHHHHHHHHHTT--TSSCEEEC
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC---C-CEEEEEECCHHHHHHHHHhcc--CCCcEEEe
Confidence 4556666665431 1113578999999999999988887632 2 279999999999998887653 22348888
Q ss_pred cchhhc
Q 025207 102 TDIASG 107 (256)
Q Consensus 102 ~d~~~~ 107 (256)
+|+...
T Consensus 97 ~D~l~~ 102 (322)
T d1i4wa_ 97 RDPYDW 102 (322)
T ss_dssp SCTTCH
T ss_pred Cchhhc
Confidence 887654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.50 E-value=6.6e-05 Score=61.07 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...|++.++... ..++..|||+.||+|+.++++.++ +-..+|+|++++.++.|++++...
T Consensus 236 P~~L~~rlI~~~----s~~gdiVlDpF~GSGTT~~AA~~l------gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 236 PAKLPEFFIRML----TEPDDLVVDIFGGSNTTGLVAERE------SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CTHHHHHHHHHH----CCTTCEEEETTCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred chHHHHHhhhhc----ccCCCEEEecCCCCcHHHHHHHHc------CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 456677776655 368999999999999988876665 448999999999999999887543
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.49 E-value=0.00012 Score=57.37 Aligned_cols=118 Identities=9% Similarity=-0.003 Sum_probs=63.1
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhc
Q 025207 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASG 107 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~ 107 (256)
.++.+.. .+ ++..+|+|+|||.|.++..++.. .+...+.|+++--..-+. ......++.+. .+...+-.
T Consensus 56 ~~~~~~~-~~--~~~~~vvDlG~~pGgws~~~a~~----~~v~~V~g~~iG~d~~e~-P~~~~~~~~ni~~~~~~~dv-- 125 (257)
T d2p41a1 56 RWFVERN-LV--TPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEE-PIPMSTYGWNLVRLQSGVDV-- 125 (257)
T ss_dssp HHHHHTT-SS--CCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCC-CCCCCSTTGGGEEEECSCCT--
T ss_pred HHHHHhc-Cc--cCCCeEEEecCCCChHHHHHHhh----cCCCceeEEEecCccccC-CccccccccccccchhhhhH--
Confidence 4455543 22 57789999999999998777654 233467777763211000 00001111121 23222221
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
....++..|+|+|+.-=. .+..+ .+ ..-...+++.+.+.|+|||.+++-
T Consensus 126 -~~l~~~~~D~vlcDm~es-s~~~~-----vd---------~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 126 -FFIPPERCDTLLCDIGES-SPNPT-----VE---------AGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp -TTSCCCCCSEEEECCCCC-CSSHH-----HH---------HHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred -HhcCCCcCCEEEeeCCCC-CCCch-----hh---------hhhHHHHHHHHHHHcccCCEEEEE
Confidence 122357899999985211 11111 11 111336678888999999987763
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=97.48 E-value=0.0027 Score=51.48 Aligned_cols=153 Identities=15% Similarity=0.088 Sum_probs=90.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+.+|||+.||.|.+...+.+. +-+ .+.++|+++.+++..+.|.. ...++|+.+..... -..+|+++.
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a----G~~-~v~a~e~d~~a~~~~~~N~~------~~~~~Di~~~~~~~-~~~~Dll~g 77 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC----GAE-CVYSNEWDKYAQEVYEMNFG------EKPEGDITQVNEKT-IPDHDILCA 77 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT----TCE-EEEEECCCHHHHHHHHHHHS------CCCBSCGGGSCGGG-SCCCSEEEE
T ss_pred CCCeEEEECccccHHHHHHHHC----CCe-EEEEEeCCHHHHHHHHHHCC------CCCcCchhcCchhh-cceeeeeec
Confidence 6789999999999988776554 222 47889999999999888863 23357777654332 246999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCcEEE
Q 025207 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~~~~ 195 (256)
.||....+....... . .+.++. .+..+++ +.+.++|.=.++=..+... ....+...+++.||....
T Consensus 78 gpPCq~fS~ag~~~g-----~-~d~r~~-l~~~~~~-~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~ 149 (327)
T d2c7pa1 78 GFPCQAFSISGKQKG-----F-EDSRGT-LFFDIAR-IVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA 149 (327)
T ss_dssp ECCCTTTCTTSCCCG-----G-GSTTSC-HHHHHHH-HHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred ccccchhhhhhhhcC-----C-cccchh-HHHHHHH-HHhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCccee
Confidence 999876655322110 1 111111 2334443 3456788643332222211 124667788888887543
Q ss_pred EE--e----cCCCCccEEEEEEEec
Q 025207 196 VV--Q----RSTEEENLHIIKFWRD 214 (256)
Q Consensus 196 ~~--~----~~~~~~~~~l~~~~~~ 214 (256)
.. . ..+...+++++...++
T Consensus 150 ~vl~a~~~GvPQ~R~R~fivg~r~~ 174 (327)
T d2c7pa1 150 KVLNALDYGIPQKRERIYMICFRND 174 (327)
T ss_dssp EEEEGGGGTCSBCCEEEEEEEEBGG
T ss_pred eEecHHHcCCCchhhhheeeeeccC
Confidence 22 1 1234566666655443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.44 E-value=0.00024 Score=56.50 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025207 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...|++.++... ..++..|||+.||+|..++++.++ +-+.+|+|++++.++.|++++...
T Consensus 193 P~~L~~~~I~~~----s~~gdiVLDpF~GSGTT~~Aa~~l------gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 193 PAAVIERLVRAL----SHPGSTVLDFFAGSGVTARVAIQE------GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CHHHHHHHHHHH----SCTTCEEEETTCTTCHHHHHHHHH------TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred chhHHHHHHHhh----cCCCCEEEecCCCCcHHHHHHHHh------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 466777777665 368999999999999998877766 348999999999999999998753
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.0017 Score=52.87 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=85.4
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh-cCCCccEEE
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR-LAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~fD~Ii 120 (256)
+.+|+|+.||.|.+...+... +-+.+ +.++|+++.+++..+.|.. ...++.+|+.+..... ....+|+++
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a----G~~~~~~~a~E~~~~a~~~~~~n~~----~~~~~~~di~~~~~~~~~~~~~Dll~ 73 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES----CIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH----TCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CCEEEEcCcCccHHHHHHHHc----CCCCeEEEEEECCHHHHHHHHHHCC----CCCcccCchhhCCHhHcCCCCccEEE
Confidence 568999999999987666544 22223 7899999999988777642 2367777877664332 224699999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc--ccCeEEEEEEeCCC-----CHHHHHHHHHHcCCcE
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL--SKRGWLYLVTLTAN-----DPSQICLQMMEKGYAA 193 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L--kpgG~l~~~~~~~~-----~~~~~~~~~~~~g~~~ 193 (256)
..||-...+....... . .++++ .....+++-+. .+ +|.- ++.+.... ..+.+.+.|++.||.+
T Consensus 74 ggpPCq~fS~ag~~~~-----~-~d~r~-~l~~~~~~~i~-~~~~kPk~--~i~ENV~~l~~~~~~~~i~~~l~~~GY~v 143 (343)
T d1g55a_ 74 MSPPCQPFTRIGRQGD-----M-TDSRT-NSFLHILDILP-RLQKLPKY--ILLENVKGFEVSSTRDLLIQTIENCGFQY 143 (343)
T ss_dssp ECCC-------------------------CHHHHHHHHGG-GCSSCCSE--EEEEEETTGGGSHHHHHHHHHHHHTTEEE
T ss_pred eecccccccccccccc-----c-ccccc-cccchhhhhHh-hhcCCCce--eeeeccCCcccchhhHHHHhhhhcccccc
Confidence 9999766554321100 0 01111 11223333332 33 5753 33343222 2356778888899876
Q ss_pred EEEEe------cCCCCccEEEEEEEecC
Q 025207 194 RIVVQ------RSTEEENLHIIKFWRDF 215 (256)
Q Consensus 194 ~~~~~------~~~~~~~~~l~~~~~~~ 215 (256)
..... ..+...+++++...++.
T Consensus 144 ~~~vlna~dyGvPQ~R~Rvfivg~r~~~ 171 (343)
T d1g55a_ 144 QEFLLSPTSLGIPNSRLRYFLIAKLQSE 171 (343)
T ss_dssp EEEEECGGGGTCSCCCCEEEEEEEESSS
T ss_pred ceeeeeccccCCcccceeEEEEEEeCCc
Confidence 54332 12456777777665543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.41 E-value=0.00015 Score=53.68 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=62.7
Q ss_pred cCCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc-------hhhchhhh
Q 025207 40 EHHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD-------IASGLEKR 111 (256)
Q Consensus 40 ~~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d-------~~~~~~~~ 111 (256)
.+++.+||=+||| .|.+++.+++. .+++|+++|.+++.++.|++. +....+...+ ..+.....
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~-----~Ga~vi~v~~~~~r~~~a~~~----ga~~~~~~~~~~~~~~~~~~~~~~~ 94 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKA-----YGAFVVCTARSPRRLEVAKNC----GADVTLVVDPAKEEESSIIERIRSA 94 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCHHHHHHHHHT----TCSEEEECCTTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhh-----hcccccccchHHHHHHHHHHc----CCcEEEeccccccccchhhhhhhcc
Confidence 3688999999877 34444444443 357999999999999988763 3222222111 11111122
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
....+|+|+-... ....+..+.++|+++|+++++..
T Consensus 95 ~g~g~D~vid~~g---------------------------~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 95 IGDLPNVTIDCSG---------------------------NEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SSSCCSEEEECSC---------------------------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred cccCCceeeecCC---------------------------ChHHHHHHHHHHhcCCceEEEec
Confidence 2356899987422 24567888899999999998654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.40 E-value=0.00016 Score=58.73 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=50.4
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.++++|..+.+....++++|+|+.+|||....+....... .. .-.+.+...+.++.++|+++|.+++...
T Consensus 14 ~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~-~~------~y~~~~~~~l~~~~rvLk~~G~i~i~~~ 83 (320)
T d1booa_ 14 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLE-QH------EYVDWFLSFAKVVNKKLKPDGSFVVDFG 83 (320)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCH-HH------HHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCC-HH------HHHHHHHHHHHHHHHhCcccCccccccc
Confidence 8999999998888888999999999999754332110000 00 0123456778999999999999998553
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.38 E-value=0.00016 Score=53.85 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=62.3
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEE---EcchhhchhhhcC-CC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRLA-GL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~~-~~ 115 (256)
+++.+||=+|||. |..++.+++.++ . .+|+++|.+++..+.+++. |.. .++ ..+..+...+..+ ..
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~G---a-~~Vi~~d~~~~r~~~a~~l----Ga~-~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRG---A-GRIIGVGSRPICVEAAKFY----GAT-DILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTT---C-SCEEEECCCHHHHHHHHHH----TCS-EEECGGGSCHHHHHHHHTTTSC
T ss_pred CCCCEEEEEcCCcchhhhhhhhhccc---c-cccccccchhhhHHHHHhh----Ccc-ccccccchhHHHHHHHHhhccC
Confidence 6788899888875 566655555422 1 2799999999998888753 432 222 1222232223222 45
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-.-. ....++.+.++++|+|+++++.
T Consensus 97 ~D~vid~~g---------------------------~~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 97 VDRVIMAGG---------------------------GSETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EEEEEECSS---------------------------CTTHHHHHHHHEEEEEEEEECC
T ss_pred cceEEEccC---------------------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 999987432 1244677788999999999854
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.28 E-value=0.00057 Score=50.70 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=63.3
Q ss_pred CCCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G-~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
+++.+||=+|||.- ..++.+++.+ + ...++++|.+++.++.+++. |.. .++.. |..+...+..++.|
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~---g-~~~v~~~~~~~~k~~~a~~~----Ga~-~~i~~~~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVC---G-ASIIIAVDIVESRLELAKQL----GAT-HVINSKTQDPVAAIKEITDGGV 97 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHH---T-CSEEEEEESCHHHHHHHHHH----TCS-EEEETTTSCHHHHHHHHTTSCE
T ss_pred CCCCEEEEeCCCHHHhhhhhccccc---c-cceeeeeccHHHHHHHHHHc----CCe-EEEeCCCcCHHHHHHHHcCCCC
Confidence 68899999988632 2333344332 2 33788999999998888763 433 23322 33333333445689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+-... ....++.+.++++++|+++++.
T Consensus 98 D~vid~~G---------------------------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 98 NFALESTG---------------------------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp EEEEECSC---------------------------CHHHHHHHHHTEEEEEEEEECC
T ss_pred cEEEEcCC---------------------------cHHHHHHHHhcccCceEEEEEe
Confidence 99987422 2466788899999999999854
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.23 E-value=0.00069 Score=49.87 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=60.5
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-chhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~fD~ 118 (256)
+++.+|+-+|+| .|..++.+++. .+++++++|.+++.++.+++ .|.+ .++.. +-.+. .....+.+|+
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~-----~G~~vi~~~~~~~k~~~a~~----lGa~-~~i~~~~~~~~-~~~~~~~~d~ 94 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKA-----MGAETYVISRSSRKREDAMK----MGAD-HYIATLEEGDW-GEKYFDTFDL 94 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHH-----HTCEEEEEESSSTTHHHHHH----HTCS-EEEEGGGTSCH-HHHSCSCEEE
T ss_pred CCCCEEEEECCCCcchhHHHHhhh-----ccccccccccchhHHHHhhc----cCCc-EEeeccchHHH-HHhhhcccce
Confidence 688999999987 45555555544 25799999999998888765 3433 23322 21122 1223467999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++..-.-. ....+..+.+.|+++|+++++.
T Consensus 95 vi~~~~~~-------------------------~~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 95 IVVCASSL-------------------------TDIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEECCSCS-------------------------TTCCTTTGGGGEEEEEEEEECC
T ss_pred EEEEecCC-------------------------ccchHHHHHHHhhccceEEEec
Confidence 88732100 0011345678999999999854
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.14 E-value=0.0011 Score=50.10 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=66.7
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh-cCCCc
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR-LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~-~~~~f 116 (256)
+++.+||-+|||. |..+..+++.. ....|+++|.+++.++.|++. |... .....|+.+...+. ....+
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~----ga~~Vi~~d~~~~rl~~a~~~----Ga~~~~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLL----GAAVVIVGDLNPARLAHAKAQ----GFEIADLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT----TCSEEEEEESCHHHHHHHHHT----TCEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhh----cccceeeecccchhhHhhhhc----cccEEEeCCCcCHHHHHHHHhCCCCc
Confidence 6899999999987 55655555552 345899999999999888764 3321 11122333332222 23468
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++-.-....... ......+.. ....++.+.+.++|||++.++.
T Consensus 96 D~vid~vG~~~~~~-------~~~~~~~~~-----~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 96 DCAVDAVGFEARGH-------GHEGAKHEA-----PATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEECCCTTCBCS-------STTGGGSBC-----TTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEEECccccccCC-------cccceeecC-----cHHHHHHHHHHHhcCCEEEEee
Confidence 99986322110000 000000000 2356889999999999999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.00025 Score=53.06 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhc---hhhh-
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASG---LEKR- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~---~~~~- 111 (256)
+++.+||-+|+|. |...+.+++.+ ++ +|+++|.+++.++.+++. |.+ .++. .+..+. ..+.
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~-----Ga~~Vi~~~~~~~~~~~a~~l----Ga~-~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSL-----GAENVIVIAGSPNRLKLAEEI----GAD-LTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHT-----TBSEEEEEESCHHHHHHHHHT----TCS-EEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCccchhheeccccc-----ccccccccccccccccccccc----cce-EEEeccccchHHHHHHHHHhh
Confidence 5789999998873 45555555542 33 799999999999888653 432 2221 122221 1121
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....+|+|+-.-. ....++...+.|++||+++++.
T Consensus 97 ~~~g~Dvvid~vG---------------------------~~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 97 HGRGADFILEATG---------------------------DSRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp TTSCEEEEEECSS---------------------------CTTHHHHHHHHEEEEEEEEECC
T ss_pred CCCCceEEeecCC---------------------------chhHHHHHHHHhcCCCEEEEEe
Confidence 1345999986321 1234677788999999998754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.0013 Score=48.60 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=63.1
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhh-cCC
Q 025207 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~-~~~ 114 (256)
+++.+||-.|+ |.|..++.+++.+ ++++++++.+++..+.+++ .|.+ .++. .|+.+..... ...
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~-----G~~vi~~~~~~~~~~~~~~----~Ga~-~vi~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAY-----GLKILGTAGTEEGQKIVLQ----NGAH-EVFNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHH----TTCS-EEEETTSTTHHHHHHHHHCTT
T ss_pred CCCCEEEEEecccccccccccccccc-----Ccccccccccccccccccc----cCcc-cccccccccHHHHhhhhhccC
Confidence 58899999996 4556666666652 5789999989887777654 4543 2322 2333332222 245
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+... -...++...+.|+++|+++.+.
T Consensus 97 g~d~v~d~~----------------------------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 97 GIDIIIEML----------------------------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp CEEEEEESC----------------------------HHHHHHHHHHHEEEEEEEEECC
T ss_pred CceEEeecc----------------------------cHHHHHHHHhccCCCCEEEEEe
Confidence 699998741 1345777888999999999853
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.00077 Score=49.71 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=61.9
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhch---hhhcC
Q 025207 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGL---EKRLA 113 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~---~~~~~ 113 (256)
.+++.+|+=+|+|.. ++.+++.+...+ ..+|+++|.+++.++.|++. |.+. ++.. +..+.. .....
T Consensus 24 ~~~gd~VlI~G~G~i--G~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~----Ga~~-~~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPI--GMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEI----GADL-VLQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp CCTTCEEEEECCSHH--HHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCSE-EEECSSCCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCcc--HHHHHHHHHHcC-CceEEeccCCHHHHHHHHHh----CCcc-cccccccccccccccccccCC
Confidence 367899999988643 333333333222 23899999999999988753 4332 2221 211111 11123
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
..+|+|+..-. ....++...+++++||+++++..
T Consensus 96 ~g~Dvvid~~G---------------------------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 96 CKPEVTIECTG---------------------------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp SCCSEEEECSC---------------------------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCceEEEeccC---------------------------CchhHHHHHHHhcCCCEEEEEec
Confidence 57899987422 24568888999999999998654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.95 E-value=0.00067 Score=50.40 Aligned_cols=98 Identities=21% Similarity=0.189 Sum_probs=65.7
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---c--hhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---D--IASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d--~~~~~~~~~~~ 114 (256)
+++.+|+=+|||. |..++.+++.++ ...|+++|.+++..+.|++. |.. .++.. | ..........+
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~G----a~~Vi~~d~~~~r~~~a~~~----Ga~-~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAG----ASRIIAIDINGEKFPKAKAL----GAT-DCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCGGGHHHHHHT----TCS-EEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhC----CceeeeeccchHHHHHHHHh----CCC-cccCCccchhhhhhhHhhhhcC
Confidence 6889999999986 777777777643 23799999999988877763 333 22221 1 11111122346
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+++-.-. ....+++..+.+++| |+++++..
T Consensus 98 G~d~vie~~G---------------------------~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 98 GVDYSLDCAG---------------------------TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp CBSEEEESSC---------------------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCcEEEEecc---------------------------cchHHHHHHHHhhcCCeEEEecCC
Confidence 7999987421 256788899999996 99998653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.78 E-value=0.0026 Score=46.42 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=57.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCcc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~fD 117 (256)
+++.+|+=+|+| .+++.+.+.++. .+++|+++|.+++.++.+++ .|.+ .++.. |..+.......+.+|
T Consensus 26 ~~g~~VlV~GaG--~vG~~~~~~ak~--~G~~Vi~~~~~~~~~~~a~~----~Ga~-~~i~~~~~~~~~~~~~~~~g~~~ 96 (166)
T d1llua2 26 RPGQWVAISGIG--GLGHVAVQYARA--MGLHVAAIDIDDAKLELARK----LGAS-LTVNARQEDPVEAIQRDIGGAHG 96 (166)
T ss_dssp CTTCEEEEECCS--HHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----TTCS-EEEETTTSCHHHHHHHHHSSEEE
T ss_pred CCCCEEEEeecc--ccHHHHHHHHHH--cCCccceecchhhHHHhhhc----cCcc-ccccccchhHHHHHHHhhcCCcc
Confidence 678899988875 344444444332 25799999999999888765 3433 23322 222222222223344
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.|++. . -...+..+.++|+++|+++++.
T Consensus 97 ~i~~~-~---------------------------~~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 97 VLVTA-V---------------------------SNSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp EEECC-S---------------------------CHHHHHHHHTTEEEEEEEEECC
T ss_pred ccccc-c---------------------------cchHHHHHHHHhcCCcEEEEEE
Confidence 44442 1 1355778889999999999854
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.61 E-value=0.0039 Score=45.79 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=61.7
Q ss_pred CCCCEEEEecccccH-HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc---hhhchhhhcCCCc
Q 025207 41 HHPVLCMEVGCGSGY-VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD---IASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~-~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~f 116 (256)
+++.+||=+|+|... .++.+++.. + ...|+++|.+++.++.+++. +.. .++..+ ............+
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~---g-~~~vv~~~~~~~k~~~~~~~----ga~-~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVM---T-PATVIALDVKEEKLKLAERL----GAD-HVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH---C-CCEEEEEESSHHHHHHHHHT----TCS-EEEETTSCHHHHHHHHTTTCCE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhh---c-CcccccccchhHHHHHHhhc----ccc-eeecCcccHHHHHHHhhCCCCc
Confidence 578999999986443 334444432 2 34899999999988877753 322 233222 1111111123469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-... -...++...++|+++|+++++..
T Consensus 102 d~vid~~g---------------------------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 102 NVAMDFVG---------------------------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EEEEESSC---------------------------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred eEEEEecC---------------------------cchHHHHHHHHHhCCCEEEEEeC
Confidence 99987532 24568888999999999998653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.56 E-value=0.0028 Score=46.41 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=62.9
Q ss_pred cCCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc---hhhchhhh-cC
Q 025207 40 EHHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD---IASGLEKR-LA 113 (256)
Q Consensus 40 ~~~~~~VLDlGcG--~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d---~~~~~~~~-~~ 113 (256)
.+++.+||=+|++ .|..++.+++.. ....|+++|.+++..+.+++. |.+ .++..+ ..+...+. ..
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~----g~~~V~~~~~~~~~~~~~~~~----Ga~-~~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAV----SGATIIGVDVREEAVEAAKRA----GAD-YVINASMQDPLAEIRRITES 95 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHH----TCCEEEEEESSHHHHHHHHHH----TCS-EEEETTTSCHHHHHHHHTTT
T ss_pred CCCCCEEEEEeccccceeeeeeccccc----ccccccccccchhhHHHHHHc----CCc-eeeccCCcCHHHHHHHHhhc
Confidence 3688999999974 344444444442 235899999999988888763 433 223222 22222221 23
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.||+|+.... -...++...+.++|||+++++.
T Consensus 96 ~~~d~vid~~g---------------------------~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 96 KGVDAVIDLNN---------------------------SEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp SCEEEEEESCC---------------------------CHHHHTTGGGGEEEEEEEEECC
T ss_pred ccchhhhcccc---------------------------cchHHHhhhhhcccCCEEEEec
Confidence 56999987422 2456788889999999999864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.36 E-value=0.014 Score=42.36 Aligned_cols=93 Identities=19% Similarity=0.146 Sum_probs=60.5
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+|+=+|| |.++-.+++.+.+.+...+|+|+|.+++.++.+++. +...... .+.... .....|+|+...|
T Consensus 3 ~I~IIG~--G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~~~~-~~~~~~----~~~~~dlIila~p 71 (171)
T d2g5ca2 3 NVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIIDEGT-TSIAKV----EDFSPDFVMLSSP 71 (171)
T ss_dssp EEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCSEEE-SCGGGG----GGTCCSEEEECSC
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcchhhh-hhhhhh----hccccccccccCC
Confidence 4666776 566666777776666677999999999999887764 2211221 122111 1246799987655
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
- .....++..+.+.++++-.++-+
T Consensus 72 ~------------------------~~~~~vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 72 V------------------------RTFREIAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp H------------------------HHHHHHHHHHHHHSCTTCEEEEC
T ss_pred c------------------------hhhhhhhhhhhcccccccccccc
Confidence 1 23567788888889988766643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.20 E-value=0.0091 Score=43.26 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=58.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+||=.|+|+-. +.+.+.+. ..+++|+++|.+++.++.+++ .|.+. .....|.........++.+|+
T Consensus 26 ~~g~~vlv~G~G~iG--~~a~~~a~--~~g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLG--HVAVQYAK--AMGLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp CTTCEEEEECCSTTH--HHHHHHHH--HTTCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCEEEEeecccch--hhhhHHHh--cCCCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhcccccCCCceE
Confidence 588899988886543 22333333 235689999999999887765 34332 111123333333322344444
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
| .+.+ -...+....+.|+++|+++++.
T Consensus 98 v-~~~~---------------------------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 98 V-VTAV---------------------------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp E-ESSC---------------------------CHHHHHHHHHHEEEEEEEEECC
T ss_pred E-eecC---------------------------CHHHHHHHHHHhccCCceEecc
Confidence 4 4432 2456788889999999999854
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.84 E-value=0.082 Score=40.88 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=63.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h------hc
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K------RL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~------~~ 112 (256)
.+++.+|=.|.+.| ++.++++.+.+. +++|+.+|.+++.++.+.+.+...+.+...+..|+.+... . ..
T Consensus 8 lenKvalITGas~G-IG~a~a~~la~~--Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 84 (251)
T d2c07a1 8 GENKVALVTGAGRG-IGREIAKMLAKS--VSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE 84 (251)
T ss_dssp CSSCEEEEESTTSH-HHHHHHHHHTTT--SSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh
Confidence 46788888886655 788888888754 6799999999999998888887766666778888765421 0 11
Q ss_pred CCCccEEEECCCCCCCC
Q 025207 113 AGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~ 129 (256)
-+++|++|.|.......
T Consensus 85 ~g~iDilvnnag~~~~~ 101 (251)
T d2c07a1 85 HKNVDILVNNAGITRDN 101 (251)
T ss_dssp CSCCCEEEECCCCCCCC
T ss_pred cCCceeeeecccccccc
Confidence 37899999988665443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.79 E-value=0.01 Score=43.33 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=60.9
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025207 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
+++.+||=.||| .|.+++.+++.++ ...|+++|.+++..+.+++. |.+. ++.. +..........+
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G----~~~vi~~~~~~~k~~~ak~l----Ga~~-~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAG----ASRIIGVDINKDKFARAKEF----GATE-CINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHT----CSEEEEECSCGGGHHHHHHH----TCSE-EECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHh----cCceEEEcccHHHHHHHHHh----CCcE-EEeCCchhhHHHHHHHHHcCC
Confidence 688999998886 2345555555432 34899999999988887753 4332 2211 122222222346
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-... ....++.+..++++||.++++.
T Consensus 98 g~D~vid~~G---------------------------~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 98 GVDYSFECIG---------------------------NVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp CBSEEEECSC---------------------------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCcEeeecCC---------------------------CHHHHHHHHHhhcCCceeEEEE
Confidence 7999987421 2466788888999997776643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.12 Score=40.13 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=60.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchh------hh--
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~------~~-- 111 (256)
+++.||=.|+++| ++.++++.|.++ +++|+.++.+++.++.+.+.+...+.+. .++..|+.+... ..
T Consensus 9 k~Kv~lITGas~G-IG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 9 RDRLALVTGASGG-IGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 6789999997755 566777777654 6799999999999998888887766543 667888765421 00
Q ss_pred cCCCccEEEECCCCCCC
Q 025207 112 LAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~ 128 (256)
.-+++|++|.|..+...
T Consensus 86 ~~g~iD~lVnnAg~~~~ 102 (257)
T d1xg5a_ 86 QHSGVDICINNAGLARP 102 (257)
T ss_dssp HHCCCSEEEECCCCCCC
T ss_pred hcCCCCEEEecccccCC
Confidence 12689999998866543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.65 E-value=0.02 Score=41.96 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=59.9
Q ss_pred CCCCEEEEec--ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE--EEcchhhchhhh-cCCC
Q 025207 41 HHPVLCMEVG--CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL--INTDIASGLEKR-LAGL 115 (256)
Q Consensus 41 ~~~~~VLDlG--cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~--~~~d~~~~~~~~-~~~~ 115 (256)
+++++||=.| .|.|.+++.+++.+ +++++++.-+++..+.+++ .|.+.-+ ...|+.+...+. ....
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~-----g~~vi~~~~~~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMI-----GARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELTDGYG 94 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred CCCCEEEEECCCCCcccccchhhccc-----cccceeeeccccccccccc----ccccccccCCccCHHHHHHHHhCCCC
Confidence 5788999876 34556666666553 5689998888877776653 4544211 122333333332 2357
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
||+|+.... ...++.+.+.|+++|+++.+
T Consensus 95 ~d~v~d~~g----------------------------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 95 VDVVLNSLA----------------------------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEEEECCC----------------------------THHHHHHHHTEEEEEEEEEC
T ss_pred EEEEEeccc----------------------------chHHHHHHHHhcCCCEEEEE
Confidence 999988421 23467778899999999985
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.53 E-value=0.011 Score=43.17 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=57.5
Q ss_pred CCCCEEEEecc-c-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025207 41 HHPVLCMEVGC-G-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGc-G-~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++++||=.|. | .|...+.+++. -+++|++++.+++..+.+++ .|.+.-+-..+...... ....+|+
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~-----~G~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~--~~~g~D~ 94 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARA-----MGLRVLAAASRPEKLALPLA----LGAEEAATYAEVPERAK--AWGGLDL 94 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHH-----TTCEEEEEESSGGGSHHHHH----TTCSEEEEGGGHHHHHH--HTTSEEE
T ss_pred CCCCEEEEEeccccchhhhhhhhcc-----cccccccccccccccccccc----cccceeeehhhhhhhhh--ccccccc
Confidence 68899998874 3 35666666665 25799999999887776654 45443222222221111 2356999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
|+-.- | ..+....+.|+++|+++++
T Consensus 95 v~d~~---------------------G--------~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 95 VLEVR---------------------G--------KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEECS---------------------C--------TTHHHHHTTEEEEEEEEEC
T ss_pred ccccc---------------------c--------hhHHHHHHHHhcCCcEEEE
Confidence 87520 0 1146677899999999875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.02 Score=41.86 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=62.4
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhh-cCC
Q 025207 41 HHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG--~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~-~~~ 114 (256)
+++++||=.|+| .|...+.+++.. +++|++++.+++..+.+++. |.+ .++. .|+.+...+. ...
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~-----Ga~Vi~~~~s~~k~~~~~~l----Ga~-~vi~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKAL-----GAKLIGTVGTAQKAQSALKA----GAW-QVINYREEDLVERLKEITGGK 96 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHH----TCS-EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEEccccccchHHHHHHHHh-----CCeEeecccchHHHHHHHhc----CCe-EEEECCCCCHHHHHHHHhCCC
Confidence 578898888655 566777777653 57999999999998887653 433 2332 2333333332 235
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+.... ...+......|+++|++++..
T Consensus 97 g~d~v~d~~g----------------------------~~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 97 KVRVVYDSVG----------------------------RDTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp CEEEEEECSC----------------------------GGGHHHHHHTEEEEEEEEECC
T ss_pred CeEEEEeCcc----------------------------HHHHHHHHHHHhcCCeeeecc
Confidence 6898877421 123667788999999987744
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.37 E-value=0.022 Score=41.76 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=33.4
Q ss_pred CCCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025207 41 HHPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 41 ~~~~~VLDlGcG~G-~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
+++..|+=.|||.. ..++.+++. ....+|+++|.+++.++.|++.
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~----~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKS----AGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH----TTCSEEEEECSCGGGHHHHHHH
T ss_pred CCCCEEEEECCCchhHHHHHHHHH----cCCceEEEecCcHHHHHHHHhc
Confidence 68899999998743 344444444 2235899999999999998875
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.016 Score=42.09 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=58.9
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++.+|+=+|+|. |.+++.+++. -+++++++|.+++..+.+++ .|.+ .++...-.+.. ......+|++
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~-----~Ga~~i~~~~~~~~~~~a~~----lGad-~~i~~~~~~~~-~~~~~~~D~v 97 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHA-----MGAHVVAFTTSEAKREAAKA----LGAD-EVVNSRNADEM-AAHLKSFDFI 97 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSGGGHHHHHH----HTCS-EEEETTCHHHH-HTTTTCEEEE
T ss_pred CCCCEEEEeccchHHHHHHHHhhc-----ccccchhhccchhHHHHHhc----cCCc-EEEECchhhHH-HHhcCCCcee
Confidence 6889999998763 4444444443 25688899999888777664 3433 23322211111 1123579999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+..-. + ...+....++|+++|+++++..
T Consensus 98 id~~g--------------------~-------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 98 LNTVA--------------------A-------PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp EECCS--------------------S-------CCCHHHHHTTEEEEEEEEECCC
T ss_pred eeeee--------------------c-------chhHHHHHHHHhcCCEEEEecc
Confidence 87321 0 1225667789999999998643
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.26 E-value=0.014 Score=42.82 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=44.7
Q ss_pred CCCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cc--hhhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TD--IASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G-~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d--~~~~~~~~~~~ 114 (256)
+++.+||=+|||.. ..++.+++.++ ..+|+++|.+++.++.+++ .|.. .++. .| ..........+
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G----~~~Vi~~d~~~~kl~~a~~----lGa~-~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAG----ASRIIGVGTHKDKFPKAIE----LGAT-ECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHT----CSEEEEECSCGGGHHHHHH----TTCS-EEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcC----CceeeccCChHHHHHHHHH----cCCc-EEEcCCCchhHHHHHHHHhcCC
Confidence 68899999998743 34444444432 3489999999999998875 3433 2222 22 11222222345
Q ss_pred CccEEEEC
Q 025207 115 LVDVMVVN 122 (256)
Q Consensus 115 ~fD~Ii~n 122 (256)
.+|+++-.
T Consensus 97 G~d~vid~ 104 (174)
T d1p0fa2 97 GVDYAVEC 104 (174)
T ss_dssp CBSEEEEC
T ss_pred CCcEEEEc
Confidence 69999874
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.12 Score=40.07 Aligned_cols=83 Identities=22% Similarity=0.215 Sum_probs=60.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~--~~ 113 (256)
+++++|=-|.+ +.++.++++.+.++ +++|+.+|.+++.++.+.+.+...+-+..++..|+.+... . . .-
T Consensus 10 ~gK~alITGas-~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAIITGAG-AGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 67888877755 45677777777654 6799999999999998888888777666778888765421 1 0 12
Q ss_pred CCccEEEECCCCCC
Q 025207 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
+++|+++.|.-...
T Consensus 87 g~iDilvnnAG~~~ 100 (255)
T d1fmca_ 87 GKVDILVNNAGGGG 100 (255)
T ss_dssp SSCCEEEECCCCCC
T ss_pred CCCCEeeeCCcCCC
Confidence 68999999876543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.20 E-value=0.18 Score=34.51 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=46.9
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEEC
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVN 122 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~n 122 (256)
||.|.++..+++.|.+. +..|+.+|.+++.++.+++.+ ...++.+|..+.. ....-...|.+++-
T Consensus 6 ~G~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 6 AGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp ECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred ECCCHHHHHHHHHHHHC--CCCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhccc
Confidence 56688998899888654 568999999999988765531 2378889877653 22223578999883
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.08 E-value=0.017 Score=42.17 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=57.8
Q ss_pred CCCCEEEEecccccH-HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch----hhchhhhcCCC
Q 025207 41 HHPVLCMEVGCGSGY-VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI----ASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~-~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~----~~~~~~~~~~~ 115 (256)
+++.+||=+|+|.+. ..+.+++. .....|+++|.+++..+.+++. +....+...+- .........+.
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~----~g~~~Vi~~~~~~~k~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKA----AGAARIIGVDINKDKFAKAKEV----GATECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH----TTCSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHH----cCCceEEeecCcHHHHHHHHHh----CCeeEEecCCchhHHHHHHHHHhcCC
Confidence 688999999996443 33333333 3346999999999998887664 33322211121 11112223467
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEE
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 172 (256)
+|+++-... ....++.+...++.+ |.+++.
T Consensus 99 ~D~vid~~G---------------------------~~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 99 VDFSFEVIG---------------------------RLDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp BSEEEECSC---------------------------CHHHHHHHHHHBCTTTCEEEEC
T ss_pred CCEEEecCC---------------------------chhHHHHHHHHHhcCCcceEEe
Confidence 999987432 235566677778886 555553
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.93 E-value=0.07 Score=43.78 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=44.2
Q ss_pred hHHHHHHHHHh----hcccccCCCCEEEEecccccHHHHHHHHHhccc---CCCceEEEEeCCHHHHHHHHHHHH
Q 025207 24 SFALVDALLAD----RINLVEHHPVLCMEVGCGSGYVITSLALMLGQE---VPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 24 ~~~l~~~l~~~----~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~---~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
+.++.+.+..+ +......+...|+|+|+|+|.++..+...+... .....++.+|.|+...+.-++++.
T Consensus 57 s~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 57 SQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 44555544333 322222345689999999999988777765421 124579999999997776655543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.91 E-value=0.12 Score=37.84 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=60.4
Q ss_pred CCCCEEEEec--ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCc
Q 025207 41 HHPVLCMEVG--CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlG--cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~f 116 (256)
+.+..||=.| .|.|.+++.+++.++ ...|+++..+++....+.+ ..+.+. +....++.+......+..+
T Consensus 29 G~~etVLI~gaaGgVG~~aiQlak~~G----a~~vi~~~~~~e~~~~l~~---~~gad~vi~~~~~~~~~~~~~~~~~Gv 101 (187)
T d1vj1a2 29 GSNQTMVVSGAAGACGSLAGQIGHLLG----CSRVVGICGTQEKCLFLTS---ELGFDAAVNYKTGNVAEQLREACPGGV 101 (187)
T ss_dssp TSCCEEEESSTTSTTGGGHHHHHHHTT----CSEEEEEESSHHHHHHHHH---HSCCSEEEETTSSCHHHHHHHHCTTCE
T ss_pred CCCCEEEEECCCchhhHHHHHHHHHcC----CcceecccchHHHHhhhhh---cccceEEeeccchhHHHHHHHHhccCc
Confidence 3447788766 467889888888743 2367777777665544332 234332 2222234444433334679
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
|+|+-.- + ...+....+.|+++|+++.+
T Consensus 102 Dvv~D~v------------------------G----g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 102 DVYFDNV------------------------G----GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp EEEEESS------------------------C----HHHHHHHHTTEEEEEEEEEC
T ss_pred eEEEecC------------------------C----chhHHHHhhhccccccEEEe
Confidence 9998631 1 24577888999999999874
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.86 E-value=0.17 Score=36.07 Aligned_cols=87 Identities=22% Similarity=0.149 Sum_probs=54.8
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCC
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPY 125 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~ 125 (256)
|.=+| .|.++-.+++.+.+. +.+|++.|.+++.++.+++. +.- .....+. +.. ...|+|+..-|.
T Consensus 3 I~iIG--~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~----~~~-~~~~~~~-~~~-----~~~DiIilavp~ 67 (165)
T d2f1ka2 3 IGVVG--LGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVER----QLV-DEAGQDL-SLL-----QTAKIIFLCTPI 67 (165)
T ss_dssp EEEEC--CSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT----TSC-SEEESCG-GGG-----TTCSEEEECSCH
T ss_pred EEEEe--ecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHh----hcc-ceeeeec-ccc-----cccccccccCcH
Confidence 44454 466666667766543 56899999999988876542 321 1112222 211 467999875441
Q ss_pred CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025207 126 VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.....+++++...|+++-.++-
T Consensus 68 ------------------------~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 68 ------------------------QLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp ------------------------HHHHHHHHHHGGGSCTTCEEEE
T ss_pred ------------------------hhhhhhhhhhhhhcccccceee
Confidence 2367888899988888887754
|
| >d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N6 adenine-specific DNA methylase, DAM domain: DNA methylase DpnM species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.69 E-value=0.29 Score=37.88 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHH
Q 025207 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAV 83 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i 83 (256)
..++.+|.+.++ ....+.+|+.||+|.+.+.+. +. .++.-|+++..+
T Consensus 13 ~~l~~~i~~~~p----~~~~~yvEpF~Gggav~~~~~-------~~-~~viND~n~~li 59 (275)
T d2dpma_ 13 RQLLPVIRELIP----KTYNRYFEPFVGGGALFFDLA-------PK-DAVINDFNAELI 59 (275)
T ss_dssp GGGHHHHHHHSC----SSCSCEEETTCTTCHHHHHHC-------CS-EEEEEESCHHHH
T ss_pred HHHHHHHHHhcC----cccCEEEeeCCCHHHHHhhhc-------cC-cEEEEeCCHHHH
Confidence 445677777764 346789999999999865431 22 678899999874
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.38 E-value=0.13 Score=37.49 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=61.6
Q ss_pred CCCCEEEEecccc--cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc---hhhch-hhhcCC
Q 025207 41 HHPVLCMEVGCGS--GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD---IASGL-EKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~--G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d---~~~~~-~~~~~~ 114 (256)
+++.+||=.|++. |..++.+++. -+++|+++.-+++..+.+++. +.+ .++.-+ ..+.. ......
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~-----~Ga~vi~~~~~~~~~~~~~~~----Ga~-~vi~~~~~~~~~~~~~~~~~~ 97 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKL-----KGCKVVGAAGSDEKIAYLKQI----GFD-AAFNYKTVNSLEEALKKASPD 97 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHHT----TCS-EEEETTSCSCHHHHHHHHCTT
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHc-----cCCEEEEeCCCHHHHHHHHhh----hhh-hhcccccccHHHHHHHHhhcC
Confidence 5789999777654 4566666665 357999999999887776653 433 222222 11211 122345
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-.-. ...++.+.+.|+++|.++++-
T Consensus 98 Gvd~v~D~vG----------------------------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 98 GYDCYFDNVG----------------------------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp CEEEEEESSC----------------------------HHHHHHHGGGEEEEEEEEECC
T ss_pred CCceeEEecC----------------------------chhhhhhhhhccCCCeEEeec
Confidence 6999987311 345788899999999999853
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.36 E-value=0.18 Score=36.41 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=46.8
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025207 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
-++.+|+=+|+|. |..++..++.+ ++.|+++|.+++.++..+.....+ .+....+-....... ...|+|
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~l-----GA~V~~~D~~~~~l~~l~~~~~~~---~~~~~~~~~~l~~~~--~~aDiv 99 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGL-----GAQVQIFDINVERLSYLETLFGSR---VELLYSNSAEIETAV--AEADLL 99 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHHGGG---SEEEECCHHHHHHHH--HTCSEE
T ss_pred CCCcEEEEECCChHHHHHHHHHhhC-----CCEEEEEeCcHHHHHHHHHhhccc---ceeehhhhhhHHHhh--ccCcEE
Confidence 3688999999995 55666666654 579999999999988776654321 233333322221111 368999
Q ss_pred EEC
Q 025207 120 VVN 122 (256)
Q Consensus 120 i~n 122 (256)
|..
T Consensus 100 I~a 102 (168)
T d1pjca1 100 IGA 102 (168)
T ss_dssp EEC
T ss_pred EEe
Confidence 984
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.19 Score=39.13 Aligned_cols=127 Identities=13% Similarity=0.003 Sum_probs=77.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCC
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAG 114 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~ 114 (256)
+++|.=|=-|++.++.++++.+.++ .+++|+..+.+++..+.+.+.+...+.+..++..|+.+... .. .-+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~-~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRL-FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHH-SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 5677555335556677777776543 25699999999999999888888777666888888866432 11 126
Q ss_pred CccEEEECCCCCCCCCcccc-cccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 115 LVDVMVVNPPYVPTPEDEVG-REGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++|++|.|--.......... ..+-...+... ..-...+.+.+...|+++|+++.+.
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN---~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTN---FFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHH---THHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCccccc
Confidence 89999998754332221110 00000000000 0012244667788899999988765
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.29 E-value=0.085 Score=36.28 Aligned_cols=64 Identities=17% Similarity=0.103 Sum_probs=44.3
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEEC
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVN 122 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~n 122 (256)
||.|.++..+++.|.+. +..|+.+|.+++.++.++.. + ..++.+|..+.. ....-...|.+++-
T Consensus 6 iG~G~~G~~la~~L~~~--g~~vvvid~d~~~~~~~~~~----~--~~~~~gd~~~~~~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 6 IGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYASY----A--THAVIANATEENELLSLGIRNFEYVIVA 71 (134)
T ss_dssp ECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHHTTTT----C--SEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred ECCCHHHHHHHHHHHHC--CCeEEEecCcHHHHHHHHHh----C--CcceeeecccchhhhccCCccccEEEEE
Confidence 47788999999988754 56899999999998876431 2 267778876542 11112467887774
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.25 E-value=0.16 Score=36.67 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=65.4
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc----CCcc----eEEEcchhhchhhhcCCC
Q 025207 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH----NVHA----DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~----~~~~----~~~~~d~~~~~~~~~~~~ 115 (256)
++|.=+|+| .++..++..|.+. +..|+.+|.+++.++..++.-... +... .....|..+.. ..
T Consensus 2 k~iaIiGaG--~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~ 72 (184)
T d1bg6a2 2 KTYAVLGLG--NGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-----KD 72 (184)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-----TT
T ss_pred CEEEEECcc--HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh-----cC
Confidence 455556665 4445566666543 569999999998887765532110 0111 12222332222 45
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHHcCC
Q 025207 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMMEKGY 191 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~g~ 191 (256)
.|+|+.--|- .....+++++..+|+++-.+++ ..+.. ........+...+.
T Consensus 73 aD~iii~v~~------------------------~~~~~~~~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~~ 124 (184)
T d1bg6a2 73 ADVILIVVPA------------------------IHHASIAANIASYISEGQLIIL-NPGATGGALEFRKILRENGA 124 (184)
T ss_dssp CSEEEECSCG------------------------GGHHHHHHHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTTC
T ss_pred CCEEEEEEch------------------------hHHHHHHHHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhcC
Confidence 8999874331 1157889999999999987665 33332 23345566665543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.22 E-value=0.4 Score=36.88 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=61.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh---------hh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE---------KR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~---------~~ 111 (256)
-+++++|=-|.+. .++.++++.+.++ +++|+.+|.+++.++.+.+.+...+....++..|+.+... ..
T Consensus 6 L~GK~alITGas~-GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 6 LEGCTALVTGGSR-GIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CTTCEEEEESCSS-HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCC-HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 3688899888664 4566777777654 6799999999999998888887777666777888754321 11
Q ss_pred cCCCccEEEECCCCCCC
Q 025207 112 LAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~ 128 (256)
..++.|+++.|.-....
T Consensus 83 ~~~~idilvnnAG~~~~ 99 (259)
T d2ae2a_ 83 FHGKLNILVNNAGIVIY 99 (259)
T ss_dssp TTTCCCEEEECCCCCCC
T ss_pred hCCCceEEEECCceecc
Confidence 23479999998765443
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=94.12 E-value=0.082 Score=43.87 Aligned_cols=53 Identities=8% Similarity=0.008 Sum_probs=44.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.++..++|+|+-.|..+..++.... ....+|+++|.++..++.+++|+..+..
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~--~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTK--GKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHT--SCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcC--CCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 5778999999999998877776643 2245899999999999999999988754
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.96 E-value=0.32 Score=37.79 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=58.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchh------hh-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLE------KR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~------~~- 111 (256)
+++++|=-|++.| ++.++++.+.+. +++|+.+|.+++.++.+.+.+...+.. ...+..|+.+... ..
T Consensus 3 ~gK~alITGas~G-IG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 3 SGKSVIITGSSNG-IGRSAAVIFAKE--GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 5788888887665 577777777654 679999999999999888888776643 2677888765421 10
Q ss_pred -cCCCccEEEECCC
Q 025207 112 -LAGLVDVMVVNPP 124 (256)
Q Consensus 112 -~~~~fD~Ii~npP 124 (256)
.-+++|+++.|.-
T Consensus 80 ~~~G~iDilVnnAG 93 (274)
T d1xhla_ 80 AKFGKIDILVNNAG 93 (274)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCceEEEeecc
Confidence 1268999999864
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.90 E-value=0.036 Score=40.68 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=59.9
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc-hhhchhhhcCCCcc
Q 025207 41 HHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD-IASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG--~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~fD 117 (256)
+++.+||=-|.+ .|.+++.+++.+ +++|+++--+++..+.+++ .|.+..+-..+ ..+.......+.+|
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~-----Ga~Viat~~s~~k~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~gvD 100 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKR-----GYTVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLDKQRWA 100 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCTTCHHHHHH----TTCSEEEECC---------CCSCCEE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHc-----CCceEEecCchHHHHHHHh----cccceeeecchhHHHHHHHhhccCcC
Confidence 356788888754 456777777663 6789999988888887764 34432111111 11111122346799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+-+.. ...+....+.|++||+++.+..
T Consensus 101 ~vid~vg----------------------------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 101 AAVDPVG----------------------------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp EEEECST----------------------------TTTHHHHHHTEEEEEEEEECSC
T ss_pred EEEEcCC----------------------------chhHHHHHHHhCCCceEEEeec
Confidence 8877421 1337778889999999998654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.76 E-value=0.53 Score=36.35 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=76.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC-HHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN-PYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R-- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~-~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~-- 111 (256)
-+++++|=-|++.| ++.++++.+.++ +++|+..|.+ ++.++.+.+.+...+.+..++..|+.+... . .
T Consensus 16 L~gK~~lITGas~G-IG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 16 LEGKVALVTGAGRG-IGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHc--CCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHH
Confidence 36788888887655 466677776654 6789999876 666777777777777666777788765321 1 0
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-++.|+++.|..............+....... ....-...+.+.+.+.|+.+|.++++.
T Consensus 93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~--~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFT--INTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHH--HHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HhCCCCccccccccchhhhhhhhhhhHHHHHhh--hccceeeeecccccccccccccccccc
Confidence 126799999987655443322111111000000 000112344566777788888877754
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.71 E-value=0.33 Score=37.40 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=59.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh---------hh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE---------KR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~---------~~ 111 (256)
-+++++|=-|+++| ++.++++.+.+. +++|+.+|.+++.++.+.+.+...+.+...+..|+.+... ..
T Consensus 6 LkgK~alVTGas~G-IG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKG-IGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHH
Confidence 36889998897655 566677776654 6799999999999988888887766666777778754321 11
Q ss_pred cCCCccEEEECCCCCC
Q 025207 112 LAGLVDVMVVNPPYVP 127 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~ 127 (256)
+.+.+|+++.|.....
T Consensus 83 ~~g~idilvnnAG~~~ 98 (259)
T d1xq1a_ 83 FGGKLDILINNLGAIR 98 (259)
T ss_dssp HTTCCSEEEEECCC--
T ss_pred hCCCcccccccccccC
Confidence 2367999999876544
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.30 E-value=0.35 Score=37.17 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=77.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h------h
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K------R 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~------~ 111 (256)
-.+++||=-| |++.++.++++.+.+. +++|+.. +.+++..+.+.+.+...+.+...+..|+.+... . .
T Consensus 4 L~GK~alITG-as~GIG~aia~~la~~--G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 4 LAGKVALTTG-AGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTCEEEETT-TTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeC-CCCHHHHHHHHHHHHc--CCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHH
Confidence 3678888777 5677788888877654 5677764 577888888888888887766788888765321 1 0
Q ss_pred cCCCccEEEECCCCCCCCCcccc-cccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 112 LAGLVDVMVVNPPYVPTPEDEVG-REGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-+.+|++|.|....+..+.+.. ..+-...+... ....-.+.+.+.+.++.+|.++++.
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n---~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLN---TRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHH---THHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HcCCCcEEEeccccccccccccchHHHHHHHHhhc---cceeeeehhhhhhhhhcCCcccccc
Confidence 12679999998876544332211 11111111000 0012234566667778887776654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.28 E-value=0.075 Score=38.43 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=44.1
Q ss_pred CCCCEEEEecccccHHH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch-----hhchhhhcCC
Q 025207 41 HHPVLCMEVGCGSGYVI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI-----ASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~-~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~-----~~~~~~~~~~ 114 (256)
+++.+|+=+|+|.+... ..+++. .....|+++|.+++..+.+++ .|.+ .++..+- ..........
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~----~g~~~Vi~~~~~~~rl~~a~~----~GAd-~~in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHS----AGAKRIIAVDLNPDKFEKAKV----FGAT-DFVNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH----TTCSEEEEECSCGGGHHHHHH----TTCC-EEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEEecCCccchHHHHHHH----HhhchheeecchHHHHHHHHH----cCCc-EEEcCCCcchhHHHHHHhhccC
Confidence 68899999999875543 323333 234589999999998888765 3433 2332111 1111111245
Q ss_pred CccEEEEC
Q 025207 115 LVDVMVVN 122 (256)
Q Consensus 115 ~fD~Ii~n 122 (256)
.+|+++-.
T Consensus 98 G~d~vid~ 105 (175)
T d1cdoa2 98 GVDFSLEC 105 (175)
T ss_dssp CBSEEEEC
T ss_pred Ccceeeee
Confidence 79999874
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.13 E-value=0.59 Score=35.90 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=61.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh---------hh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE---------KR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~---------~~ 111 (256)
-++++||=.|+. +.++.++++.+.++ +++|+.++.+++.++.+.+.+...+....++..|+.+... ..
T Consensus 4 L~gK~alITGas-~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 4 LKGTTALVTGGS-KGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CTTCEEEEESCS-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 368899988876 45566677766644 6799999999999988888888777766777888765431 12
Q ss_pred cCCCccEEEECCCCCCC
Q 025207 112 LAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~ 128 (256)
..+..|+++.|......
T Consensus 81 ~~g~idilinnag~~~~ 97 (258)
T d1ae1a_ 81 FDGKLNILVNNAGVVIH 97 (258)
T ss_dssp TTSCCCEEEECCCCCCC
T ss_pred hCCCcEEEecccccccc
Confidence 23678999987755443
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.29 E-value=0.47 Score=36.64 Aligned_cols=81 Identities=14% Similarity=0.209 Sum_probs=55.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
+++.+|=.|+++| ++.++++.+.++ +++|+.+|.+++.++.+.+.+...+ ...++..|+.+... .. .-
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGSPD-VISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCTT-TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhcCCC-ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 6788999997665 577777777654 6799999999998887766654322 12567778765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|.-..
T Consensus 81 g~iD~lVnnAG~~ 93 (268)
T d2bgka1 81 GKLDIMFGNVGVL 93 (268)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCcceeccccccc
Confidence 6899999987543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.67 Score=32.26 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=44.6
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEEC
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVN 122 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~n 122 (256)
||.|.++..+++.|.+. +..++.+|.+++......+..... ...++.+|..+.. ....-.+.|.+++.
T Consensus 9 ~G~g~~g~~l~~~L~~~--~~~v~vId~d~~~~~~~~~~~~~~--~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 9 CGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLEQRLGD--NADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp ECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHCT--TCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred ECCCHHHHHHHHHHHHc--CCCEEEEeccchhHHHHHHHhhcC--CcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 55678888888887654 458999999987654333333222 2378899977652 22233578899884
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=91.99 E-value=0.3 Score=35.68 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=53.9
Q ss_pred CCCCEEEEeccc---ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhch---hh-
Q 025207 41 HHPVLCMEVGCG---SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGL---EK- 110 (256)
Q Consensus 41 ~~~~~VLDlGcG---~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~---~~- 110 (256)
+++.+||=+..| .|..++.+++.+ +++++++--+++..+...+.++..|.+. ++.- +..+.. .+
T Consensus 27 ~~g~~vli~~ga~g~vG~~aiqlAk~~-----Ga~vI~~v~~~~~~~~~~~~~~~lGad~-vi~~~~~~~~~~~~~v~~~ 100 (189)
T d1gu7a2 27 TPGKDWFIQNGGTSAVGKYASQIGKLL-----NFNSISVIRDRPNLDEVVASLKELGATQ-VITEDQNNSREFGPTIKEW 100 (189)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHH-----TCEEEEEECCCTTHHHHHHHHHHHTCSE-EEEHHHHHCGGGHHHHHHH
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHhhc-----CCeEEEEEecccccchHHhhhhhccccE-EEeccccchhHHHHHHHHH
Confidence 466666666333 456666666653 5688877544444444444455556543 2222 111111 11
Q ss_pred --hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025207 111 --RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 111 --~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.....+|+++-.- -...+....+.|+++|+++.+
T Consensus 101 ~~~~g~~vdvv~D~v----------------------------g~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 101 IKQSGGEAKLALNCV----------------------------GGKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHTCCEEEEEESS----------------------------CHHHHHHHHHTSCTTCEEEEC
T ss_pred HhhccCCceEEEECC----------------------------CcchhhhhhhhhcCCcEEEEE
Confidence 1135689887521 023456677899999999875
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.80 E-value=0.61 Score=31.50 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=57.6
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEECCCCCCC
Q 025207 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 51 cG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~npP~~~~ 128 (256)
||.|.++..+++.|. +..++.+|.+++..+.++. .+ ..++.+|..+.. ....-.+.+.+++..+
T Consensus 6 ~G~g~~g~~l~~~L~----~~~i~vi~~d~~~~~~~~~----~~--~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~---- 71 (129)
T d2fy8a1 6 CGWSESTLECLRELR----GSEVFVLAEDENVRKKVLR----SG--ANFVHGDPTRVSDLEKANVRGARAVIVNLE---- 71 (129)
T ss_dssp ESCCHHHHHHHHTSC----GGGEEEEESCTTHHHHHHH----TT--CEEEESCTTSHHHHHHTTCTTCSEEEECCS----
T ss_pred ECCCHHHHHHHHHHc----CCCCEEEEcchHHHHHHHh----cC--ccccccccCCHHHHHHhhhhcCcEEEEecc----
Confidence 678888888998875 3368899999998776543 23 378889976542 2222356888888532
Q ss_pred CCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+ +....++-...+.+.|...++...
T Consensus 72 -~-------------------d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 72 -S-------------------DSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp -S-------------------HHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred -c-------------------hhhhHHHHHHHHHHCCCceEEEEE
Confidence 0 112233444556688888777644
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.63 E-value=1.3 Score=33.67 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=56.2
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCCCcc
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAGLVD 117 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~~fD 117 (256)
+|=-|++ +.++.++++.+.++ +++|+.+|.+++.++.+.+.+...+.+...+..|+.+... .. .-+++|
T Consensus 4 alITGas-~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAG-QGIGKAIALRLVKD--GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCc-cHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 3555654 55677777777654 6799999999999998888887777666777888765421 10 127899
Q ss_pred EEEECCCCCC
Q 025207 118 VMVVNPPYVP 127 (256)
Q Consensus 118 ~Ii~npP~~~ 127 (256)
++|.|--+..
T Consensus 81 ilVnnAG~~~ 90 (255)
T d1gega_ 81 VIVNNAGVAP 90 (255)
T ss_dssp EEEECCCCCC
T ss_pred EEEecccccc
Confidence 9999875543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.40 E-value=1.7 Score=32.98 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=57.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH-HHcCCcceEEEcchhhchh------hh--c
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL-EAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~-~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
+++++|=-|.+.| ++.++++.+.++ +++|+.+|.+++..+.+.+.+ +..+.+...+..|+.+... .. .
T Consensus 4 ~gK~~lITGas~G-IG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGSRG-LGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 6788998887655 567777777654 679999999988877665554 3446555677788765421 10 1
Q ss_pred CCCccEEEECCCCCC
Q 025207 113 AGLVDVMVVNPPYVP 127 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~ 127 (256)
-+++|++|.|--...
T Consensus 81 ~g~iDiLVnnAG~~~ 95 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINR 95 (251)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred cCCCCEEEECCCCCC
Confidence 268999999875543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=91.11 E-value=0.71 Score=37.40 Aligned_cols=131 Identities=12% Similarity=0.086 Sum_probs=70.2
Q ss_pred CCEEEEecccccHHHHHHHH-------H-hc----ccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--c---eEEEcchh
Q 025207 43 PVLCMEVGCGSGYVITSLAL-------M-LG----QEVPGVQYIATDINPYAVEVTRKTLEAHNVH--A---DLINTDIA 105 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~-------~-l~----~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~---~~~~~d~~ 105 (256)
.-+|.|+||.+|..++.+.. . +. ...|..+|+--|+-.+-....=+.+....-. . ..+-+.+.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 36799999999987742222 1 11 1245778899998776666554444322111 1 22333333
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCccccccc-chhhhcCC----C----C---cHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREG-IASAWAGG----E----N---GRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~-~~~~~~~~----~----~---~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-+ +++++.|++.+-...+..+........ ....+..+ . . ....+..+|+.=.+-|+|||+++++.
T Consensus 132 ~rL--fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 132 GRL--FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SCC--SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhc--CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 322 246889999985544443331110000 00011100 0 0 12245667777778899999999976
Q ss_pred eC
Q 025207 174 LT 175 (256)
Q Consensus 174 ~~ 175 (256)
.+
T Consensus 210 ~g 211 (359)
T d1m6ex_ 210 LG 211 (359)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=90.98 E-value=0.9 Score=34.66 Aligned_cols=82 Identities=26% Similarity=0.223 Sum_probs=58.5
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCC
Q 025207 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAG 114 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~ 114 (256)
++.+|=-|++ +.++.++++.+.++ +++|+.+|.+++.++.+.+.+...+.+..++..|+.+... .. .-+
T Consensus 2 gKValITGas-~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGAT-SGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCS-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4556666754 45577777877654 6799999999999998888888777666778888765431 10 127
Q ss_pred CccEEEECCCCCC
Q 025207 115 LVDVMVVNPPYVP 127 (256)
Q Consensus 115 ~fD~Ii~npP~~~ 127 (256)
+.|++|.|--...
T Consensus 79 ~iDilVnnAG~~~ 91 (257)
T d2rhca1 79 PVDVLVNNAGRPG 91 (257)
T ss_dssp SCSEEEECCCCCC
T ss_pred CCCEEEecccccC
Confidence 8999999865443
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=90.97 E-value=0.75 Score=35.60 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=76.3
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEEEECCC
Q 025207 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~Ii~npP 124 (256)
+..-+|+-.++ +..+ .++-+++.+|+.|.-.+..++++.. .....++..|..+.+... +.++=-+|+.+||
T Consensus 87 l~~YPGSP~ia---~~ll---R~~Drl~l~ELHp~e~~~L~~~~~~-~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPp 159 (271)
T d2oo3a1 87 LSYYPGSPYFA---INQL---RSQDRLYLCELHPTEYNFLLKLPHF-NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 159 (271)
T ss_dssp CCEEECHHHHH---HHHS---CTTSEEEEECCSHHHHHHHTTSCCT-TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred cCcCCCCHHHH---HHhC---CCCCceEEeecCHHHHHHHHHHhcc-CCCceEEcCchHHHHHhhCCCCCCceEEEecCC
Confidence 35677777752 2333 3456899999999999988876532 123488889987776433 2355679999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeCCCC--HHHHHHHHHHcCCcE
Q 025207 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLTAND--PSQICLQMMEKGYAA 193 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~--~~~~~~~~~~~g~~~ 193 (256)
|-... .+.++++.+.+.++ +.|++++..|-... ...+.+.+.+.+.+.
T Consensus 160 YE~k~---------------------ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k~ 211 (271)
T d2oo3a1 160 YERKE---------------------EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKS 211 (271)
T ss_dssp CCSTT---------------------HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSE
T ss_pred cCCHH---------------------HHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCccc
Confidence 95322 25556665555555 67888887774442 234555555555543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.84 E-value=0.84 Score=34.69 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=61.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h------hcC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K------RLA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~------~~~ 113 (256)
.|+.+|=-|++.|. +.++++.+.++ +++|+.+|.+++.++...+.+...+.+...+..|+.+... . ..-
T Consensus 6 ~Gkv~lITGas~GI-G~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGI-GRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 56777777877664 55666666543 6799999999999998888888777666777888766532 0 123
Q ss_pred CCccEEEECCCCCCCCC
Q 025207 114 GLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~ 130 (256)
+..|+++.|--......
T Consensus 83 g~idilinnag~~~~~~ 99 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYTSD 99 (244)
T ss_dssp CCCSEEEECCCCCCCCC
T ss_pred CCCceeEeecccccccc
Confidence 67999999876654443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=90.75 E-value=1.4 Score=33.48 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=55.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
+++.+|=-|.+ +.++.++++.+.+. +++|+.+|.+++.++.+.+.+.. +-...++..|+.+... .. .-
T Consensus 5 ~gK~alVTGas-~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 5 DGKVAIITGGT-LGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 67888888855 45667777777654 67999999999988877766532 2233677888765421 10 12
Q ss_pred CCccEEEECCCCCC
Q 025207 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
+++|++|.|..+..
T Consensus 81 G~iDiLVnnAg~~~ 94 (251)
T d1zk4a1 81 GPVSTLVNNAGIAV 94 (251)
T ss_dssp SSCCEEEECCCCCC
T ss_pred CCceEEEecccccc
Confidence 68999999875544
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.54 E-value=0.98 Score=34.45 Aligned_cols=80 Identities=21% Similarity=0.208 Sum_probs=53.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++.+|=-|.+. .++.++++.+.++ +++|+.+|.+++.++.+.+.+ +-...++..|+.+... .. .-
T Consensus 5 ~gK~alITGas~-GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 5 QGKVALVTGGAS-GVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh---CCCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 678888888654 4677778877654 679999999998877665543 3334566667654321 10 12
Q ss_pred CCccEEEECCCCCC
Q 025207 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
++.|+++.|.-...
T Consensus 79 g~iDilVnnAG~~~ 92 (253)
T d1hxha_ 79 GTLNVLVNNAGILL 92 (253)
T ss_dssp CSCCEEEECCCCCC
T ss_pred CCCCeEEecccccC
Confidence 68999999875543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=90.36 E-value=0.41 Score=34.34 Aligned_cols=96 Identities=18% Similarity=0.095 Sum_probs=58.6
Q ss_pred CCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc-hhhhcCCCccE
Q 025207 42 HPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG-LEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~fD~ 118 (256)
++..||=-|. |.|.+++.+++.+ +++|+++.-+++..+.+++ .|.+.-+...|.... ......+.+|+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~-----Ga~Viat~~s~~k~~~~~~----lGad~vi~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKR-----GYDVVASTGNREAADYLKQ----LGASEVISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHH-----TCCEEEEESSSSTHHHHHH----HTCSEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHc-----CCceEEEecCHHHHHHHHh----hcccceEeccchhchhhhcccCCCceE
Confidence 3455776553 4556777777764 5689999998887777654 344322211121111 11112457999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+-+. -...+..+.+.|+++|+++++-.
T Consensus 94 vid~v----------------------------gg~~~~~~~~~l~~~G~iv~~G~ 121 (167)
T d1tt7a2 94 AVDPV----------------------------GGKQLASLLSKIQYGGSVAVSGL 121 (167)
T ss_dssp EEESC----------------------------CTHHHHHHHTTEEEEEEEEECCC
T ss_pred EEecC----------------------------cHHHHHHHHHHhccCceEEEeec
Confidence 87641 12457788999999999998553
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.61 E-value=1 Score=32.64 Aligned_cols=79 Identities=8% Similarity=0.037 Sum_probs=51.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccE
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~ 118 (256)
-++++||=.|.+.| ++..+++.+.++ +++|+.++.+++..+.+.+.+..+. ...+...|..+.. ... -+..|+
T Consensus 21 l~gK~vlItGasgG-IG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~-~~~iDi 95 (191)
T d1luaa1 21 VKGKKAVVLAGTGP-VGMRSAALLAGE--GAEVVLCGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEA-VKGAHF 95 (191)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHH-TTTCSE
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHhh--ccchhhcccchHHHHHHHHHHHhcc-chhhhhhhcccHHHHHHH-hcCcCe
Confidence 37899999986555 456667666654 6799999999998887777765432 1133444443321 121 257899
Q ss_pred EEECCC
Q 025207 119 MVVNPP 124 (256)
Q Consensus 119 Ii~npP 124 (256)
++.|-.
T Consensus 96 lin~Ag 101 (191)
T d1luaa1 96 VFTAGA 101 (191)
T ss_dssp EEECCC
T ss_pred eeecCc
Confidence 998854
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=89.54 E-value=1.1 Score=32.17 Aligned_cols=94 Identities=16% Similarity=0.080 Sum_probs=57.2
Q ss_pred CCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025207 43 PVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGc--G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+..||=.|. |.|.+++.+++.+ +++|+++.-+++..+.+++. |.+ .++.-+-.+......+..+|.++
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~-----Ga~Via~~~~~~k~~~~~~l----Gad-~vi~~~~~~~~~~l~~~~~~~vv 101 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKL-----GYQVVAVSGRESTHEYLKSL----GAS-RVLPRDEFAESRPLEKQVWAGAI 101 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCGGGHHHHHHH----TEE-EEEEGGGSSSCCSSCCCCEEEEE
T ss_pred CCcEEEEEccccchHHHHHHHHHc-----CCCeEEEecchhHHHHHHhh----ccc-cccccccHHHHHHHHhhcCCeeE
Confidence 346765542 3455666666653 67899999999887776643 332 33333222222222345678876
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025207 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-. . -...+....+.|+++|+++.+..
T Consensus 102 D~-V---------------------------gg~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 102 DT-V---------------------------GDKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp ES-S---------------------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred EE-c---------------------------chHHHHHHHHHhccccceEeecc
Confidence 42 1 13457788889999999998643
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.48 E-value=0.7 Score=35.42 Aligned_cols=82 Identities=24% Similarity=0.321 Sum_probs=59.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++.+|=-|.+. .++.++++.+.+. +++|+.+|.+++.++.+.+.+...+.+...+..|+.+... .. .-
T Consensus 4 ~gK~alITGas~-GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGG-NIGLATALRLAEE--GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 678888888654 4566777777654 6799999999999999888887777666777888765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
++.|++|.|..+.
T Consensus 81 g~iDilVnnaG~~ 93 (260)
T d1zema1 81 GKIDFLFNNAGYQ 93 (260)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCeehhhhccc
Confidence 6899999986544
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.25 E-value=1.6 Score=32.96 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=54.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=-|.+.| ++.++++.+.++ +++|+.+|.+++.++.+.+.+. .....+..|+.+... .. .-
T Consensus 3 ~gK~alITGas~G-IG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 3 EGKIALVTGASRG-IGRAIAETLAAR--GAKVIGTATSENGAQAISDYLG---ANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhC---CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 5778888886654 577777777654 6799999999988877666543 233566777654321 10 12
Q ss_pred CCccEEEECCCCCCC
Q 025207 114 GLVDVMVVNPPYVPT 128 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~ 128 (256)
++.|++|.|.-....
T Consensus 77 g~iDilVnnAg~~~~ 91 (243)
T d1q7ba_ 77 GEVDILVNNAGITRD 91 (243)
T ss_dssp CSCSEEEECCCCCCC
T ss_pred CCcceehhhhhhccc
Confidence 689999998755443
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.27 E-value=2.7 Score=31.78 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=54.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
+++++|=-|.+. .++.++++.+.++ +++|+.+|.+++.++.+.+.+ +.+...+..|+.+... .. .-
T Consensus 4 ~gK~alVTGas~-GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 77 (256)
T d1k2wa_ 4 DGKTALITGSAR-GIGRAFAEAYVRE--GARVAIADINLEAARATAAEI---GPAACAIALDVTDQASIDRCVAELLDRW 77 (256)
T ss_dssp TTEEEEEETCSS-HHHHHHHHHHHHT--TEEEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh---CCceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 578888888654 5566777777654 679999999988776655443 4444677778765431 10 12
Q ss_pred CCccEEEECCCCCCC
Q 025207 114 GLVDVMVVNPPYVPT 128 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~ 128 (256)
++.|++|.|.-....
T Consensus 78 g~iDilVnnAg~~~~ 92 (256)
T d1k2wa_ 78 GSIDILVNNAALFDL 92 (256)
T ss_dssp SCCCEEEECCCCCCC
T ss_pred CCccEEEeecccccc
Confidence 689999999866543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.91 E-value=2.1 Score=32.46 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=53.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=-|++.| ++.++++.+.++ +++|+.+|.+++.++.+.+.+. ...++..|+.+... .. .-
T Consensus 5 ~GK~alITGas~G-IG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~~----~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 5 AGKVVVVTGGGRG-IGAGIVRAFVNS--GARVVICDKDESGGRALEQELP----GAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhcC----CCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 6788998897665 677777777654 6799999999988776654331 23677778755321 10 11
Q ss_pred CCccEEEECCCCCC
Q 025207 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
++.|++|.|.-...
T Consensus 78 g~iDilVnnAG~~~ 91 (250)
T d1ydea1 78 GRLDCVVNNAGHHP 91 (250)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCCCEEEecccccc
Confidence 67999999876443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=87.46 E-value=2.6 Score=28.98 Aligned_cols=106 Identities=14% Similarity=0.065 Sum_probs=57.5
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~ 131 (256)
|.|.++..+++.+.+..+ .+++..|.+++..+...+. .+. .. ..+.... ...|+|+..-+
T Consensus 7 G~G~MG~ai~~~l~~~~~-~~i~v~~r~~~~~~~l~~~---~~~--~~-~~~~~~v------~~~Div~lavk------- 66 (152)
T d1yqga2 7 GGGNMAAAVAGGLVKQGG-YRIYIANRGAEKRERLEKE---LGV--ET-SATLPEL------HSDDVLILAVK------- 66 (152)
T ss_dssp CCSHHHHHHHHHHHHHCS-CEEEEECSSHHHHHHHHHH---TCC--EE-ESSCCCC------CTTSEEEECSC-------
T ss_pred cCcHHHHHHHHHHHHCCC-CcEEEEeCChhHHHHhhhh---ccc--cc-ccccccc------cccceEEEecC-------
Confidence 456677667765544333 4899999999887765543 232 11 1222221 34799886321
Q ss_pred ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025207 132 EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
...+..+.+-+++.+.++++.......+.+.+.+.. ........+.
T Consensus 67 ---------------------P~~~~~v~~~l~~~~~~viS~~ag~~~~~l~~~l~~-~~~iir~mpn 112 (152)
T d1yqga2 67 ---------------------PQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGG-TRRIVRVMPN 112 (152)
T ss_dssp ---------------------HHHHHHHHTTCCCTTCEEEECCTTCCHHHHHHHTTS-CCCEEEEECC
T ss_pred ---------------------HHHHHHhHHHHhhcccEEeecccCCCHHHHHHHhCc-CcceEeeccc
Confidence 122334444456667777766555556666655532 2334444443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.10 E-value=3.9 Score=31.36 Aligned_cols=86 Identities=14% Similarity=0.193 Sum_probs=58.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-HcCCcceEEEcchhhchh--------hh
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-AHNVHADLINTDIASGLE--------KR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-~~~~~~~~~~~d~~~~~~--------~~ 111 (256)
-+++++|=-|++.| ++.++++.+.+. +++|+.+|.+++.++.+.+.+. ..+....++..|+.+... ..
T Consensus 23 l~gK~alITGas~G-IG~aiA~~la~~--Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 23 FQGKVAFITGGGTG-LGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTCEEEEETTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence 36788998887655 677777777654 6799999999988876665554 345455677777754421 11
Q ss_pred cCCCccEEEECCCCCCCC
Q 025207 112 LAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~ 129 (256)
..+++|+++.|.-.....
T Consensus 100 ~~g~iDilvnnAg~~~~~ 117 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFIS 117 (294)
T ss_dssp HTCSCSEEEECCCCCCCS
T ss_pred hccccchhhhhhhhcccc
Confidence 247899999987654433
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=87.06 E-value=2.5 Score=31.74 Aligned_cols=80 Identities=24% Similarity=0.261 Sum_probs=53.4
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeC-CHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cCCCc
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-NPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LAGLV 116 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~-~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~~~f 116 (256)
||=-|. ++.++.++++.+.+. +++|+..|. +++..+.+.+.+...+.+..++..|+.+... .. .-+++
T Consensus 4 ~lITGa-s~GIG~a~a~~la~~--Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 4 VVVTGA-SRGIGKAIALSLGKA--GCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp EEETTC-SSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred EEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 333454 455778888887754 678887765 6777888888777777666777888765421 10 12789
Q ss_pred cEEEECCCCCCC
Q 025207 117 DVMVVNPPYVPT 128 (256)
Q Consensus 117 D~Ii~npP~~~~ 128 (256)
|++|.|.-....
T Consensus 81 DiLVnnAg~~~~ 92 (244)
T d1edoa_ 81 DVVVNNAGITRD 92 (244)
T ss_dssp SEEEECCCCCCC
T ss_pred Cccccccccccc
Confidence 999998755443
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=86.94 E-value=1 Score=34.15 Aligned_cols=83 Identities=17% Similarity=0.095 Sum_probs=54.3
Q ss_pred CCCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------
Q 025207 41 HHPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------ 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G-~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------ 111 (256)
-+++++|=-|++++ .++.++++.+.++ +++|+..+.++...+.+.+.....+ ...++..|+.+... ..
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~--Ga~V~i~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~ 82 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEA--GAEVALSYQAERLRPEAEKLAEALG-GALLFRADVTQDEELDALFAGVKE 82 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHTT-CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEeCcHHHHHHHHHhhhccC-cccccccccCCHHHHHHHHHHHHH
Confidence 36889999997653 3666777777654 6789999998877776665554433 33566777654321 00
Q ss_pred cCCCccEEEECCCCC
Q 025207 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
.-++.|++|.|--+.
T Consensus 83 ~~g~iDilVnnag~~ 97 (256)
T d1ulua_ 83 AFGGLDYLVHAIAFA 97 (256)
T ss_dssp HHSSEEEEEECCCCC
T ss_pred hcCCceEEEeccccc
Confidence 126799999876543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.90 E-value=2.2 Score=32.37 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=55.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchh--hh------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLE--KR------ 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~--~~------ 111 (256)
+++.+|=-|++.| ++.++++.+.++ +++|+.+|.+++.++.+.+.+...+.. ...+..|+.+... ..
T Consensus 3 ~gK~alITGas~G-IG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 3 TDRVVLITGGGSG-LGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 5678888887655 456667766644 679999999999988877776655433 3567778755421 10
Q ss_pred cCCCccEEEECCCC
Q 025207 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.-+++|++|.|--.
T Consensus 80 ~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGI 93 (258)
T ss_dssp HHSCCSEEEECCCC
T ss_pred HhCCCCEEEECCcc
Confidence 12689999998643
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=86.43 E-value=2.9 Score=31.32 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=54.7
Q ss_pred EEEecccccHHHHHHHHHhcccCCC-----ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------h--hc
Q 025207 46 CMEVGCGSGYVITSLALMLGQEVPG-----VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------K--RL 112 (256)
Q Consensus 46 VLDlGcG~G~~~~~la~~l~~~~~~-----~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~--~~ 112 (256)
||=-|++.| ++.++++.+.+++.+ ..++..+.+++.++.+.+.+...+....++..|+.+... . ..
T Consensus 4 vlITGas~G-IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 4 LLITGAGKG-IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEETTTSH-HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEccCCCH-HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 344566555 566677766554321 248999999999988888877766666778888765431 1 01
Q ss_pred CCCccEEEECCCCCCC
Q 025207 113 AGLVDVMVVNPPYVPT 128 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~ 128 (256)
-++.|+++.|.-....
T Consensus 83 ~g~iDilvnnAg~~~~ 98 (240)
T d2bd0a1 83 YGHIDCLVNNAGVGRF 98 (240)
T ss_dssp TSCCSEEEECCCCCCC
T ss_pred cCCcceeecccccccC
Confidence 2689999998765443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.38 E-value=1.4 Score=33.82 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=57.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchh------hh-
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLE------KR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~------~~- 111 (256)
+++++|=.|++. .++.++++.+.++ +++|+.+|.+++.++.+.+.+...+.. ...+..|+.+... ..
T Consensus 4 ~gK~alVTGas~-GIG~aia~~la~~--Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 4 SNKTVIITGSSN-GIGRTTAILFAQE--GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCc-HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 678888888654 5566677776654 679999999999999988888766543 2677788765321 10
Q ss_pred -cCCCccEEEECCCC
Q 025207 112 -LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 -~~~~fD~Ii~npP~ 125 (256)
.-+++|+++.|.-.
T Consensus 81 ~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCceEEEeCCcc
Confidence 12689999998643
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=86.00 E-value=5.2 Score=29.67 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=47.1
Q ss_pred cccCCCCEEEEecccc--cHHHHHHHHHhcccCCCceEEE-EeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCC
Q 025207 38 LVEHHPVLCMEVGCGS--GYVITSLALMLGQEVPGVQYIA-TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAG 114 (256)
Q Consensus 38 ~~~~~~~~VLDlGcG~--G~~~~~la~~l~~~~~~~~v~g-iD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 114 (256)
.++.++.+|-=||||. |.........+.+..++.+++| .|.+++..+.+.+ ..+.+......|..+... +.
T Consensus 11 ~~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~---~~ 84 (237)
T d2nvwa1 11 VPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIE---QLQLKHATGFDSLESFAQ---YK 84 (237)
T ss_dssp SGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHH---HTTCTTCEEESCHHHHHH---CT
T ss_pred CCCCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHH---hcccccceeecchhhccc---cc
Confidence 3445778999999997 3443322223333246778886 6888876654433 344443233355555433 35
Q ss_pred CccEEEECCC
Q 025207 115 LVDVMVVNPP 124 (256)
Q Consensus 115 ~fD~Ii~npP 124 (256)
.+|+|+..-|
T Consensus 85 ~iD~V~i~tp 94 (237)
T d2nvwa1 85 DIDMIVVSVK 94 (237)
T ss_dssp TCSEEEECSC
T ss_pred ccceeeccCC
Confidence 7898876543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=85.89 E-value=1.8 Score=32.84 Aligned_cols=84 Identities=7% Similarity=0.017 Sum_probs=57.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH-HHcCCcceEEEcchhhchh------h--h
Q 025207 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL-EAHNVHADLINTDIASGLE------K--R 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~-~~~~~~~~~~~~d~~~~~~------~--~ 111 (256)
-+++++|=-|. ++.++.++++.+.+. +++|+.+|.+++..+.+.+.+ +..+.+...+..|+.+... . .
T Consensus 7 l~gK~alITGa-s~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 7 FVNKTIIVTGG-NRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp CTTEEEEEETT-TSHHHHHHHHHHHHT--TEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 36788888885 456677778877654 679999999877665554444 4456566777888765421 1 0
Q ss_pred cCCCccEEEECCCCCC
Q 025207 112 LAGLVDVMVVNPPYVP 127 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~ 127 (256)
.-++.|++|.|.....
T Consensus 84 ~~g~iDilVnnAg~~~ 99 (260)
T d1h5qa_ 84 DLGPISGLIANAGVSV 99 (260)
T ss_dssp HSCSEEEEEECCCCCC
T ss_pred HhCCCcEecccccccc
Confidence 1378999999876544
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.59 E-value=3.3 Score=30.02 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=25.4
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
|.|.+++.+|..+.+. +.+|+|+|++++.++...
T Consensus 7 GlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln 40 (202)
T d1mv8a2 7 GLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLIN 40 (202)
T ss_dssp CCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred CCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhc
Confidence 6666777777776644 458999999999887654
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=85.55 E-value=4.4 Score=28.45 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=61.7
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-chhhchhhhcCCCccEEEECCCCCCCCC
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~ 130 (256)
|.|.++..+++.|.+. +..|++.|.+++..+...+..........+... +....... ....-+++++-++
T Consensus 8 GlG~MG~~ma~~L~~~--G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------ 78 (178)
T d1pgja2 8 GLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAAS-LKKPRKALILVQA------ 78 (178)
T ss_dssp CCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHH-BCSSCEEEECCCC------
T ss_pred eehHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHh-cccceEEEEeecC------
Confidence 7788888888887754 568999999999877665543221111122222 22222111 1122233333222
Q ss_pred cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH---HHHHHHHHcCCcE
Q 025207 131 DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS---QICLQMMEKGYAA 193 (256)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~g~~~ 193 (256)
.......+......+++|.+++-. +..... ++.+.+.+.++..
T Consensus 79 ------------------~~~~~~~~~~~~~~~~~~~iii~~--st~~~~~~~~~~~~l~~~~~~~ 124 (178)
T d1pgja2 79 ------------------GAATDSTIEQLKKVFEKGDILVDT--GNAHFKDQGRRAQQLEAAGLRF 124 (178)
T ss_dssp ------------------SHHHHHHHHHHHHHCCTTCEEEEC--CCCCHHHHHHHHHHHHTTTCEE
T ss_pred ------------------cchhhhhhhhhhhhccccceeccc--CccchhHHHHHHHHHhhcceeE
Confidence 122456677888889998877652 233233 4555666666543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.46 E-value=4.7 Score=30.14 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=52.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh--cCCCcc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR--LAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~--~~~~fD 117 (256)
.++++|=.|++. .++.++++.+.++ +++|+.+|.+++.++.+.+.+. ....+..|+.+... .. .-+++|
T Consensus 6 ~GK~~lITGas~-GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGK-GIGRGTVQALHAT--GARVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 688999999665 5566677776644 6799999999888776554321 23566777655421 11 126899
Q ss_pred EEEECCCCCC
Q 025207 118 VMVVNPPYVP 127 (256)
Q Consensus 118 ~Ii~npP~~~ 127 (256)
++|.|.....
T Consensus 79 ilVnnAg~~~ 88 (244)
T d1pr9a_ 79 LLVNNAAVAL 88 (244)
T ss_dssp EEEECCCCCC
T ss_pred EEEecccccc
Confidence 9999875543
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=85.41 E-value=2.1 Score=32.16 Aligned_cols=129 Identities=11% Similarity=0.059 Sum_probs=68.6
Q ss_pred CCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--------hhc
Q 025207 42 HPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--------KRL 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G-~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--------~~~ 112 (256)
++++||=.|+++| .++.++++.+.++ +++|+..+.+++..+.+.+.....+.. .....|..+... ...
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLGSD-IVLQCDVAEDASIDTMFAELGKV 80 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTTTHHHHHHHHHHTTCC-CEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHhhcCCc-ceeecccchHHHHHHHHHHhhhc
Confidence 6788998887764 3455556665543 678999999988777777666554432 333444332211 112
Q ss_pred CCCccEEEECCCCCCCCCccccccc--chhhhcCC-CCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025207 113 AGLVDVMVVNPPYVPTPEDEVGREG--IASAWAGG-ENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+..|.++.|..+...........+ ....|... .........+.+.+...+++++.++++.
T Consensus 81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~is 144 (258)
T d1qsga_ 81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 144 (258)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEec
Confidence 4778999988655432221100000 00000000 0000122333455667788888877755
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=85.31 E-value=4.5 Score=30.52 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=54.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC-HHHHHHHHHHHH-HcCCcceEEEcchhhchh--hh------
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN-PYAVEVTRKTLE-AHNVHADLINTDIASGLE--KR------ 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~-~~~i~~a~~~~~-~~~~~~~~~~~d~~~~~~--~~------ 111 (256)
+++.+|=-|++.| ++.++++.|.++ +++|+.++.+ ++.++.+.+.+. ..+.+..++..|+.+... ..
T Consensus 3 ~gK~alITGas~G-IG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 3 KGKVAVVTGSTSG-IGLGIATALAAQ--GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHT--TCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCH-HHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 5678886676654 466777777654 6799999986 566666666554 345555677788765421 11
Q ss_pred cCCCccEEEECCCCCC
Q 025207 112 LAGLVDVMVVNPPYVP 127 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~ 127 (256)
.-++.|++|.|--...
T Consensus 80 ~~G~iDiLVnnAG~~~ 95 (260)
T d1x1ta1 80 QMGRIDILVNNAGIQH 95 (260)
T ss_dssp HHSCCSEEEECCCCCC
T ss_pred HhCCCcEEEeeccccc
Confidence 1168999999875543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=84.91 E-value=2.8 Score=31.62 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=50.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=-|.+ +.++.++++.+.++ +++|+..|.+++..+.+++ . ...++..|+.+... .. .-
T Consensus 4 ~GK~alITGas-~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~----~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 4 AGKGVLVTGGA-RGIGRAIAQAFARE--GALVALCDLRPEGKEVAEA----I--GGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESSTTHHHHHHH----H--TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----c--CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 67888888855 45677777777654 6799999999887655432 1 22566777765421 11 12
Q ss_pred CCccEEEECCCCC
Q 025207 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
++.|++|.|--..
T Consensus 75 G~iDiLVnnAG~~ 87 (248)
T d2d1ya1 75 GRVDVLVNNAAIA 87 (248)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCeEEEeCcCC
Confidence 6899999986543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.88 E-value=5.5 Score=29.71 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=52.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh--cCCCcc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR--LAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~--~~~~fD 117 (256)
.++++|=-|++.| ++.++++.+.++ +++|+.+|.+++.++.+.+.+. ....+..|+.+... .. .-++.|
T Consensus 4 ~GK~alITGas~G-IG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 4 SGLRALVTGAGKG-IGRDTVKALHAS--GAKVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 5788998886655 677777777654 6799999999887665544321 23566777765421 11 126899
Q ss_pred EEEECCCCC
Q 025207 118 VMVVNPPYV 126 (256)
Q Consensus 118 ~Ii~npP~~ 126 (256)
++|.|--..
T Consensus 77 ilVnnAg~~ 85 (242)
T d1cyda_ 77 LLVNNAALV 85 (242)
T ss_dssp EEEECCCCC
T ss_pred EEEECCccc
Confidence 999986543
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=83.14 E-value=1.2 Score=33.51 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=49.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEE
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~I 119 (256)
+++++|=-|.+.| ++.++++.+.+. +++|+.+|.+++.++.. + .+++..|+.+..... .-+++|++
T Consensus 3 kgK~~lVTGas~G-IG~aia~~l~~~--Ga~V~~~~r~~~~l~~~-------~--~~~~~~Dv~~~~~~~~~~~g~iD~l 70 (234)
T d1o5ia_ 3 RDKGVLVLAASRG-IGRAVADVLSQE--GAEVTICARNEELLKRS-------G--HRYVVCDLRKDLDLLFEKVKEVDIL 70 (234)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHT-------C--SEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHhc-------C--CcEEEcchHHHHHHHHHHhCCCcEE
Confidence 5788998886655 677777777654 67999999998765432 1 256667776543221 13789999
Q ss_pred EECCCC
Q 025207 120 VVNPPY 125 (256)
Q Consensus 120 i~npP~ 125 (256)
|.|.-.
T Consensus 71 VnnAG~ 76 (234)
T d1o5ia_ 71 VLNAGG 76 (234)
T ss_dssp EECCCC
T ss_pred Eecccc
Confidence 998643
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.04 E-value=6.5 Score=27.66 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=39.4
Q ss_pred EEEEecccc-cHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEE
Q 025207 45 LCMEVGCGS-GYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 45 ~VLDlGcG~-G~~~~~la~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+|.=+|||. |.. .+..+.. .++.+++|+ |.+++..+... ...+... .-...|+.+.+. +..+|+|+.
T Consensus 3 ki~iIG~G~~g~~---~~~~l~~-~~~~~i~ai~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~ll~---~~~iD~v~I 72 (184)
T d1ydwa1 3 RIGVMGCADIARK---VSRAIHL-APNATISGVASRSLEKAKAFA---TANNYPESTKIHGSYESLLE---DPEIDALYV 72 (184)
T ss_dssp EEEEESCCTTHHH---HHHHHHH-CTTEEEEEEECSSHHHHHHHH---HHTTCCTTCEEESSHHHHHH---CTTCCEEEE
T ss_pred EEEEEcCCHHHHH---HHHHHHh-CCCCEEEEEEeCCccccccch---hccccccceeecCcHHHhhh---ccccceeee
Confidence 567789985 433 2333321 467788876 88876544433 3444433 234456666543 357899876
Q ss_pred CCC
Q 025207 122 NPP 124 (256)
Q Consensus 122 npP 124 (256)
.-|
T Consensus 73 ~tp 75 (184)
T d1ydwa1 73 PLP 75 (184)
T ss_dssp CCC
T ss_pred ccc
Confidence 433
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.89 E-value=2.6 Score=32.09 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=55.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCcceEEEcchhhchhh--------hc
Q 025207 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVHADLINTDIASGLEK--------RL 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~~~~~~~d~~~~~~~--------~~ 112 (256)
+++++|=.|+++| ++.++++.+.++ |++|+.++.+++.++.+.+.+... +........|..+.... ..
T Consensus 13 ~GK~alITGassG-IG~aiA~~la~~--G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 13 QGKKVIVTGASKG-IGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 6789999998877 567777777654 679999999999998877665443 33335555554432210 11
Q ss_pred CCCccEEEECCCCCC
Q 025207 113 AGLVDVMVVNPPYVP 127 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~ 127 (256)
.+..|+++.|-....
T Consensus 90 ~g~~~~li~nag~~~ 104 (269)
T d1xu9a_ 90 MGGLDMLILNHITNT 104 (269)
T ss_dssp HTSCSEEEECCCCCC
T ss_pred hCCcccccccccccc
Confidence 367899988765443
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=81.22 E-value=6.5 Score=27.10 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=37.4
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
|.|..+..+++.|.+. +..|++.|.+++..+.+.+. +. ....+..+.. ...|+|++.-|
T Consensus 7 GlG~MG~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~----~~---~~~~~~~e~~-----~~~d~ii~~v~ 65 (161)
T d1vpda2 7 GLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAA----GA---ETASTAKAIA-----EQCDVIITMLP 65 (161)
T ss_dssp CCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT----TC---EECSSHHHHH-----HHCSEEEECCS
T ss_pred ehhHHHHHHHHHHHHC--CCeEEEEeCCcchhHHHHHh----hh---hhcccHHHHH-----hCCCeEEEEcC
Confidence 5566777777776643 56899999999987766542 21 2223333332 35799988654
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=81.11 E-value=5.2 Score=28.09 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=63.5
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc
Q 025207 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 52 G~G~~~~~la~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~ 131 (256)
|.|.++..++..|.+. +.+|++.|.+++.++...++-... ....-.....+.... -...|.++...|-
T Consensus 9 GlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--~~~~~~ii~~~~~------ 76 (176)
T d2pgda2 9 GLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAKG--TKVLGAHSLEEMVSK--LKKPRRIILLVKA------ 76 (176)
T ss_dssp CCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTTT--SSCEECSSHHHHHHH--BCSSCEEEECSCT------
T ss_pred eEhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHhcccc--ccccchhhhhhhhhh--hcccceEEEecCc------
Confidence 6688888888887754 558999999999887655431110 001111122222111 2456777765431
Q ss_pred ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH---HHHHHHHHHcCCcEE
Q 025207 132 EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP---SQICLQMMEKGYAAR 194 (256)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~~~~g~~~~ 194 (256)
-.....++..+...+++|-+++-. +.... .++.+.+.+.|....
T Consensus 77 -----------------~~~v~~v~~~l~~~~~~g~iiid~--sT~~~~~~~~~~~~~~~~g~~~l 123 (176)
T d2pgda2 77 -----------------GQAVDNFIEKLVPLLDIGDIIIDG--GNSEYRDTMRRCRDLKDKGILFV 123 (176)
T ss_dssp -----------------THHHHHHHHHHHHHCCTTCEEEEC--SCCCHHHHHHHHHHHHHTTCEEE
T ss_pred -----------------hHHHHHHHHHHHhccccCcEEEec--CcchhHHHHHHHHHHHhcCCcee
Confidence 122455677888888988766542 22223 355566666666543
|