Citrus Sinensis ID: 025216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNVHATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccEEEEEEcccccccccccccHEHcccEEcccccccccEEEEccccccccHHEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MLSILCKNYNNLRQQYMDLMNKNTENEVGISkkrkaesedhchtigfnvhatesststdeesckrpkdnntkakVSRFYvrasdsnstliVKDGyqwrkygqkvtrdnpsprayfkcsfapscpvkkkvqrsaedpsILVATyegehnhpqptdskaelslspshvatignpIHVSAAssmlsasptatldmiqpgflfddakkssvqqiEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Flexible Loop (DISEMBL)
MLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIgfnvhatesststdeesckrpkdnntkakvsrfyvrasdsnstlivkdgyqwrkyGQKVTRDNPSPRAYFkcsfapscpvkkkvqRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Low Complexity Region (SEG)
MLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNVHAtesststdeesCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Disordered region (IsUnstruct)
***ILCKNYNNLRQQY***************************TIGF******************************FYVRASDSNSTLIVKDGYQWRKYGQKVT******RAYFKCSFAPSC******************************************************************LDMIQPGFLFDDA****VQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAIS**************
Disordered Region (DISOPRED)
MLSILCKNYN*************************************************************************DSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHN********************************************************************************KDPNFTAALAAAIS**************
Disordered Region (DISEMBL)
MLSILCKNYNNLRQQYMDLMNKNTENEVG***********HCHTIGFNVHA*******************TKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSC***********DPSILVATYEGE*************SLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Disordered Region (DISPRO)
*************************************************************************KVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEH********************************************************************HQ****QMASNLTKDPNFTAALAAAISGRFADQ********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MxxxxxxxxxxxxxxxxxxxxxNTENEVGISKKRKAESEDHCHTIGFNVHATESSTSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRFADQARTQRWSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q9SAH7	302	Probable WRKY transcripti	yes	no	0.945	0.801	0.496	1e-62
Q9C5T4	310	WRKY transcription factor	no	no	0.878	0.725	0.439	5e-53
Q9SK33	271	Probable WRKY transcripti	no	no	0.796	0.752	0.447	2e-48
Q9C519	553	WRKY transcription factor	no	no	0.648	0.300	0.348	6e-23
Q9C9F0	374	Probable WRKY transcripti	no	no	0.328	0.224	0.561	6e-23
Q9XEC3	528	Probable WRKY transcripti	no	no	0.460	0.223	0.445	2e-22
Q93WT0	538	Probable WRKY transcripti	no	no	0.296	0.141	0.580	5e-22
Q9ZSI7	489	Probable WRKY transcripti	no	no	0.355	0.186	0.540	7e-22
Q8VWV6	480	Probable WRKY transcripti	no	no	0.304	0.162	0.562	1e-21
Q9LXG8	548	Probable WRKY transcripti	no	no	0.300	0.140	0.556	1e-20

>sp|Q9SAH7|WRK40_ARATH Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1

 Score =  239 bits (611), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/264 (49%), Positives = 175/264 (66%), Gaps = 22/264 (8%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNT---ENEVGISKKRKAESEDH---CHTIGFNVHATES 54
           ML+++C NYN LR+Q M+ +NK+     +++   KKRK+ + +    C  IG    +  S
Sbjct: 50  MLTLMCDNYNVLRKQLMEYVNKSNITERDQISPPKKRKSPAREDAFSCAVIGGVSES--S 107

Query: 55  STSTDEESCKRPKDNNT-KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRA 113
           ST  DE  CK+ ++    K KVSR Y +   S++TL+VKDGYQWRKYGQKVTRDNPSPRA
Sbjct: 108 STDQDEYLCKKQREETVVKEKVSRVYYKTEASDTTLVVKDGYQWRKYGQKVTRDNPSPRA 167

Query: 114 YFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT--DSKAELSLSPSHVATIGN 171
           YFKC+ APSC VKKKVQRS ED S+LVATYEGEHNHP P+  DS   L+   SH  +   
Sbjct: 168 YFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNHPMPSQIDSNNGLNRHISHGGSAST 227

Query: 172 PIHVSAASSMLSASPTATLDMIQPGFLFDDAKK--SSVQQIEAPAIHQILVQQMASNLTK 229
           P+  +  SS+    P  T+DMI+       +KK  S   +I+ P + ++LV+QMAS+LTK
Sbjct: 228 PVAANRRSSL--TVPVTTVDMIE-------SKKVTSPTSRIDFPQVQKLLVEQMASSLTK 278

Query: 230 DPNFTAALAAAISGRFADQARTQR 253
           DPNFTAALAAA++G+   Q  T++
Sbjct: 279 DPNFTAALAAAVTGKLYQQNHTEK 302

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T4|WRK18_ARATH WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2

 Score =  207 bits (527), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 119/271 (43%), Positives = 163/271 (60%), Gaps = 46/271 (16%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNT----ENEVGISKKRKAESEDHCHTIGFNVHATESST 56
           ML+ +C++YN L      L ++ +    + ++ I K+++   E     IG +   TE+S+
Sbjct: 66  MLARVCESYNELHNHLEKLQSRQSPEIEQTDIPIKKRKQDPDEFLGFPIGLSSGKTENSS 125

Query: 57  STDEE--------------SCKRP-KDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYG 101
           S ++               SCKRP  D+  KAKVS  YV    S+++L VKDG+QWRKYG
Sbjct: 126 SNEDHHHHHQQHEQKNQLLSCKRPVTDSFNKAKVSTVYVPTETSDTSLTVKDGFQWRKYG 185

Query: 102 QKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSL 161
           QKVTRDNPSPRAYF+CSFAPSCPVKKKVQRSAEDPS+LVATYEG HNH  P  S+ +   
Sbjct: 186 QKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHLGPNASEGD--- 242

Query: 162 SPSHVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAP-AIHQILV 220
                            ++    S T TLD++      +   + ++++ E    + ++L+
Sbjct: 243 -----------------ATSQGGSSTVTLDLV------NGCHRLALEKNERDNTMQEVLI 279

Query: 221 QQMASNLTKDPNFTAALAAAISGRFADQART 251
           QQMAS+LTKD  FTAALAAAISGR  +Q+RT
Sbjct: 280 QQMASSLTKDSKFTAALAAAISGRLMEQSRT 310

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK33|WRK60_ARATH Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/257 (44%), Positives = 144/257 (56%), Gaps = 53/257 (20%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNTENEVG-----ISKKRKAESEDHCHT-IGFNVHATES 54
           ML+ +C+ Y  L     +L ++ +   V      ++ KRK E ++   + IG ++   E+
Sbjct: 62  MLARVCEKYYALNNLMEELQSRKSPESVNFQNKQLTGKRKQELDEFVSSPIGLSLGPIEN 121

Query: 55  STSTDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAY 114
            T             N KA VS  Y  A  S+++L VKDGYQWRKYGQK+TRDNPSPRAY
Sbjct: 122 IT-------------NDKATVSTAYFAAEKSDTSLTVKDGYQWRKYGQKITRDNPSPRAY 168

Query: 115 FKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIH 174
           F+CSF+PSC VKKKVQRSAEDPS LVATYEG HNH  P            H         
Sbjct: 169 FRCSFSPSCLVKKKVQRSAEDPSFLVATYEGTHNHTGP------------HA-------- 208

Query: 175 VSAASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFT 234
                   S S T  LD++Q G    + KK      E   I ++LVQQMAS+LTKDP FT
Sbjct: 209 --------SVSRTVKLDLVQGGLEPVEEKK------ERGTIQEVLVQQMASSLTKDPKFT 254

Query: 235 AALAAAISGRFADQART 251
           AALA AISGR  + +RT
Sbjct: 255 AALATAISGRLIEHSRT 271

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/244 (34%), Positives = 113/244 (46%), Gaps = 78/244 (31%)

Query: 72  KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR 131
           KA+VS   VRA   +   ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR
Sbjct: 297 KARVS---VRAR--SEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQR 351

Query: 132 SAEDPSILVATYEGEHNHPQPTDSKAE-----------LSLSPSHVATIGNPIHV----- 175
            AED SIL+ TYEG HNHP P  + A            LS S S    + NP ++     
Sbjct: 352 CAEDRSILITTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAV 411

Query: 176 ---SAASSMLSAS---PTATLDM------------------------------------- 192
              S + + +SAS   PT TLD+                                     
Sbjct: 412 LPCSTSMATISASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMT 471

Query: 193 -IQPGF--------LFDDAKKSSVQ-QIEAPAIHQI----LVQQMASNLTKDPNFTAALA 238
            + PG         L++ +K S +Q    +P+         V    + LT DPNFTAALA
Sbjct: 472 NLPPGMLPHVIGQALYNQSKFSGLQFSGGSPSTAAFSQSHAVADTITALTADPNFTAALA 531

Query: 239 AAIS 242
           A IS
Sbjct: 532 AVIS 535

Transcription factor involved in the control of processes related to senescence and pathogen defense. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F0|WRKY9_ARATH Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%), Gaps = 5/89 (5%)

Query: 69  NNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKK 128
            N KA+VS   VRA    +T+   DG QWRKYGQK  + NP PRAY++C+ AP CPV+K+
Sbjct: 217 GNRKARVS---VRARCETATM--NDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQ 271

Query: 129 VQRSAEDPSILVATYEGEHNHPQPTDSKA 157
           VQR  ED SIL+ TYEG HNHP P  + A
Sbjct: 272 VQRCLEDMSILITTYEGTHNHPLPVGATA 300

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XEC3|WRK42_ARATH Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 89/146 (60%), Gaps = 28/146 (19%)

Query: 72  KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR 131
           KA+VS   VRA   +   ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR
Sbjct: 277 KARVS---VRAR--SEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQR 331

Query: 132 SAEDPSILVATYEGEHNHPQP---------TDSKAELSLSPSHVAT---IGNPIHVSA-- 177
            AED +IL+ TYEG HNHP P         T + A + LS S ++    + NP ++ A  
Sbjct: 332 CAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLART 391

Query: 178 ----ASSM--LSAS---PTATLDMIQ 194
               +SSM  +SAS   PT TLD+ +
Sbjct: 392 ILPCSSSMATISASAPFPTITLDLTE 417

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WT0|WRK31_ARATH Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 59/81 (72%), Gaps = 5/81 (6%)

Query: 72  KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR 131
           KA+VS   VRA   +   ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR
Sbjct: 282 KARVS---VRAR--SEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQR 336

Query: 132 SAEDPSILVATYEGEHNHPQP 152
            AED SIL+ TYEG HNHP P
Sbjct: 337 CAEDRSILITTYEGNHNHPLP 357

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSI7|WRK47_ARATH Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2

 Score =  104 bits (259), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 65/98 (66%), Gaps = 7/98 (7%)

Query: 57  STDEESCKRPKDN--NTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAY 114
           ST+ E  + P D     KA+VS   VRA    +T  V DG QWRKYGQK+ + NP PRAY
Sbjct: 207 STNHEEQQNPHDQLPYRKARVS---VRARSDATT--VNDGCQWRKYGQKMAKGNPCPRAY 261

Query: 115 FKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 152
           ++C+ A  CPV+K+VQR AED +IL  TYEG HNHP P
Sbjct: 262 YRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLP 299

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 58/80 (72%), Gaps = 2/80 (2%)

Query: 73  AKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRS 132
            K +R  VR+     T+   DG QWRKYGQK+ + NP PRAY++C+ A SCPV+K+VQR 
Sbjct: 174 VKKTRVSVRSRCETPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRC 231

Query: 133 AEDPSILVATYEGEHNHPQP 152
           +ED SIL++TYEG HNHP P
Sbjct: 232 SEDMSILISTYEGTHNHPLP 251

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 56/79 (70%), Gaps = 2/79 (2%)

Query: 74  KVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSA 133
           K +R  VRA     T+   DG QWRKYGQK+ + NP PRAY++C+ AP CPV+K+VQR A
Sbjct: 211 KRARVCVRARCDTPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCA 268

Query: 134 EDPSILVATYEGEHNHPQP 152
           +D SIL+ TYEG H+H  P
Sbjct: 269 DDMSILITTYEGTHSHSLP 287

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
346456324	311	WRKY transcription factor 2-7 [Dimocarpu	0.925	0.762	0.657	6e-75
224141957	318	predicted protein [Populus trichocarpa]	0.960	0.773	0.603	2e-73
315272006	317	WRKY transcription factor 3 [Vitis vinif	0.968	0.782	0.574	2e-72
345104746	319	WRKY3 transcription factor [Vitis pseudo	0.968	0.777	0.574	4e-72
225430340	317	PREDICTED: probable WRKY transcription f	0.968	0.782	0.570	6e-72
147774185	317	hypothetical protein VITISV_022504 [Viti	0.968	0.782	0.570	2e-71
112819971	313	WRKY transcription factor 2 [Gossypium h	0.945	0.773	0.597	2e-70
224115864	318	predicted protein [Populus trichocarpa]	0.953	0.767	0.562	2e-67
259121383	320	WRKY transcription factor 9 [(Populus to	0.960	0.768	0.560	2e-67
255637165	313	unknown [Glycine max]	0.929	0.760	0.558	1e-66

>gi|346456324|gb|AEO31524.1| WRKY transcription factor 2-7 [Dimocarpus longan]

 Score =  286 bits (732), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 167/254 (65%), Positives = 199/254 (78%), Gaps = 17/254 (6%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHT-IGFNVHATESSTSTD 59
           ML+++C+NYNNL+++YMDL +KN ENEV   +KRK +SED+ +  IGFN   TE S+S D
Sbjct: 68  MLAVICENYNNLQKEYMDLKSKNQENEV---RKRKPDSEDYNNNMIGFNGQ-TECSSS-D 122

Query: 60  EESCKRPKDNNT--KAKVSRFYVRASDS-NSTLIVKDGYQWRKYGQKVTRDNPSPRAYFK 116
           EESCK+PK+NN   + KVSR Y+R S S NS L VKDGYQWRKYGQKVTRDNPSPRAYFK
Sbjct: 123 EESCKKPKENNNNIRPKVSRVYLRTSGSSNSGLTVKDGYQWRKYGQKVTRDNPSPRAYFK 182

Query: 117 CSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVS 176
           CSFAPSCPVKKKVQRSAEDPS+LVATYEGEHNHPQP  SK ELS+SP    +    + VS
Sbjct: 183 CSFAPSCPVKKKVQRSAEDPSVLVATYEGEHNHPQP--SKHELSMSPRSSLSS---VPVS 237

Query: 177 AASSMLSASPTA-TLDMIQP-GFLFDDAKKSSVQQI-EAPAIHQILVQQMASNLTKDPNF 233
           + SSM S+ P+A T DM +P GF+     +  +Q+I +APAI QILVQQMA++LT DPNF
Sbjct: 238 STSSMKSSGPSAVTFDMTKPAGFVDHHELRKPIQEIDQAPAIQQILVQQMANSLTSDPNF 297

Query: 234 TAALAAAISGRFAD 247
           T ALAAAISGRF D
Sbjct: 298 TTALAAAISGRFVD 311

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141957|ref|XP_002324327.1| predicted protein [Populus trichocarpa] gi|222865761|gb|EEF02892.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 155/257 (60%), Positives = 192/257 (74%), Gaps = 11/257 (4%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNTENEVGI---SKKRKAESEDHCHTIGFNVHATESSTS 57
           ML ++C NY  L++   DL++KN+  E+     S+KRKAESED+   I         S+S
Sbjct: 70  MLGVVCDNYMALQKHLADLVSKNSVKEISTPISSRKRKAESEDYSIVINGISGGNAESSS 129

Query: 58  TDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKC 117
            DEES KRPK+N  K+K+SR Y R S+S+++L+VKDGYQWRKYGQKVTRDNPSPRAY+KC
Sbjct: 130 IDEESSKRPKEN-LKSKISRTYFRTSESDASLVVKDGYQWRKYGQKVTRDNPSPRAYYKC 188

Query: 118 SFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSA 177
           SFAPSCPVKKKVQRSAEDPSILVATYEGEHNH   + S+ E SL  SH +  G PI    
Sbjct: 189 SFAPSCPVKKKVQRSAEDPSILVATYEGEHNH--ASHSQHEPSLGSSHGSNFG-PI--PT 243

Query: 178 ASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAAL 237
            S + S++PT TLD+IQ G   D A K +VQ++E PA+ +ILVQQMAS+LT+DPNFTAAL
Sbjct: 244 QSPIRSSAPTVTLDLIQSGRHGDTATK-TVQEMEVPALQKILVQQMASSLTRDPNFTAAL 302

Query: 238 AAAISGRFADQARTQRW 254
           AAAISGRF +Q R ++W
Sbjct: 303 AAAISGRF-NQTRMEKW 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315272006|gb|ADU02584.1| WRKY transcription factor 3 [Vitis vinifera]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/254 (57%), Positives = 188/254 (74%), Gaps = 6/254 (2%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNVHATESSTSTDE 60
           MLSI+C+NYN L     +LM KN+++++  S+KRKAESED+ + I  +      S S+DE
Sbjct: 70  MLSIMCENYNALHNHLKELMRKNSDHQLFNSRKRKAESEDNINNIHGSSGNNTESISSDE 129

Query: 61  ESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFA 120
           +S K+P+++ TK KVSR  V+   S+++L++KDGYQWRKYGQKVTRDNPSPRAYFKCSFA
Sbjct: 130 DSSKKPRES-TKGKVSRVVVKTEKSDNSLLLKDGYQWRKYGQKVTRDNPSPRAYFKCSFA 188

Query: 121 PSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASS 180
           P+CPVKKKVQRSAED S+L+ATYEGEHNH QP  S  E+SL  +  AT   P  V + +S
Sbjct: 189 PTCPVKKKVQRSAEDQSLLIATYEGEHNHQQP--SPVEVSLGFNRAAT---PASVLSPAS 243

Query: 181 MLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAA 240
           M+S  PT TLD+IQPG   + AK S     E P + Q LV+QMAS+LT+DP+FTAALAAA
Sbjct: 244 MVSPRPTVTLDLIQPGLANNTAKNSVHDVKEKPVVQQFLVEQMASSLTRDPSFTAALAAA 303

Query: 241 ISGRFADQARTQRW 254
           ISGR  DQ + ++W
Sbjct: 304 ISGRILDQTQIEKW 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345104746|gb|AEN71143.1| WRKY3 transcription factor [Vitis pseudoreticulata]

 Score =  277 bits (708), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 146/254 (57%), Positives = 187/254 (73%), Gaps = 6/254 (2%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNVHATESSTSTDE 60
           MLSI+C+NYN L     +LM KN+++++  S+KRKAESED+ + I  +      S S+DE
Sbjct: 72  MLSIMCENYNALHNHLKELMRKNSDHQLFNSRKRKAESEDNINNIHGSSGNNTESISSDE 131

Query: 61  ESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFA 120
           +S K+P+++ TK KVSR  V+   S+++L++KDGYQWRKYGQKVTRDNPSPRAYFKCSFA
Sbjct: 132 DSSKKPRES-TKGKVSRVVVKTEKSDNSLLLKDGYQWRKYGQKVTRDNPSPRAYFKCSFA 190

Query: 121 PSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASS 180
           P+CPVKKKVQRSAED S+L+ATYEGEHNH QP  S  E+SL  +  AT   P  V + +S
Sbjct: 191 PTCPVKKKVQRSAEDQSLLIATYEGEHNHQQP--SPVEVSLGFNRAAT---PASVLSPAS 245

Query: 181 MLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAA 240
           M S  PT TLD+IQPG   + AK S     E P + Q LV+QMAS+LT+DP+FTAALAAA
Sbjct: 246 MASPRPTVTLDLIQPGLANNTAKNSVHDVKEKPVVQQFLVEQMASSLTRDPSFTAALAAA 305

Query: 241 ISGRFADQARTQRW 254
           ISGR  DQ + ++W
Sbjct: 306 ISGRILDQTQIEKW 319

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430340|ref|XP_002285255.1| PREDICTED: probable WRKY transcription factor 40-like [Vitis vinifera]

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 145/254 (57%), Positives = 188/254 (74%), Gaps = 6/254 (2%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNVHATESSTSTDE 60
           +LSI+C+NYN L     +LM KN+++++  S+KRKAESED+ + I  +      S S+DE
Sbjct: 70  LLSIMCENYNALHNHLKELMRKNSDHQLFNSRKRKAESEDNINNIHGSSGNNTESISSDE 129

Query: 61  ESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFA 120
           +S K+P+++ TK KVSR  V+   S+++L++KDGYQWRKYGQKVTRDNPSPRAYFKCSFA
Sbjct: 130 DSSKKPRES-TKGKVSRVVVKTEKSDNSLLLKDGYQWRKYGQKVTRDNPSPRAYFKCSFA 188

Query: 121 PSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASS 180
           P+CPVKKKVQRSAED S+L+ATYEGEHNH QP  S  E+SL  +  AT   P  V + +S
Sbjct: 189 PTCPVKKKVQRSAEDQSLLIATYEGEHNHQQP--SPVEVSLGFNRAAT---PASVLSPAS 243

Query: 181 MLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAA 240
           M+S  PT TLD+IQPG   + AK S     E P + Q LV+QMAS+LT+DP+FTAALAAA
Sbjct: 244 MVSPRPTVTLDLIQPGLANNTAKNSVHDVKEKPIVQQFLVEQMASSLTRDPSFTAALAAA 303

Query: 241 ISGRFADQARTQRW 254
           ISGR  DQ + ++W
Sbjct: 304 ISGRILDQTQIEKW 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774185|emb|CAN65715.1| hypothetical protein VITISV_022504 [Vitis vinifera]

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 145/254 (57%), Positives = 187/254 (73%), Gaps = 6/254 (2%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNVHATESSTSTDE 60
           MLSI+C+NYN L     +LM KN+++++  S+KRKAESED+ + I  +      S S+DE
Sbjct: 70  MLSIMCENYNALHNHLKELMRKNSDHQLFNSRKRKAESEDNINNIHGSSGNNTESISSDE 129

Query: 61  ESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFA 120
           +S K+P+++ TK KVSR  V+   S+++L++KDGYQWRKYGQKVTRDN SPRAYFKCSFA
Sbjct: 130 DSSKKPRES-TKGKVSRVVVKTEKSDNSLLLKDGYQWRKYGQKVTRDNXSPRAYFKCSFA 188

Query: 121 PSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASS 180
           P+CPVKKKVQRSAED S+L+ATYEGEHNH QP  S  E+SL  +  AT   P  V + +S
Sbjct: 189 PTCPVKKKVQRSAEDQSLLIATYEGEHNHQQP--SPVEVSLGFNRAAT---PASVLSPAS 243

Query: 181 MLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAA 240
           M+S  PT TLD+IQPG   + AK S     E P + Q LV+QMAS+LT+DP+FTAALAAA
Sbjct: 244 MVSPRPTVTLDLIQPGLANNTAKNSVHDVKEKPVVQQFLVEQMASSLTRDPSFTAALAAA 303

Query: 241 ISGRFADQARTQRW 254
           ISGR  DQ + ++W
Sbjct: 304 ISGRILDQTQIEKW 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|112819971|gb|ABI23959.1| WRKY transcription factor 2 [Gossypium hirsutum]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/251 (59%), Positives = 195/251 (77%), Gaps = 9/251 (3%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNTENEV--GISKKRKAESEDHCHTIGFNVHATESSTST 58
           ML++LC+ Y++L+ QYM+L+++N+ ++     SKKRKAE ED+   IGF+  A ESS S 
Sbjct: 65  MLTVLCERYSSLQNQYMELVSRNSGSDATAATSKKRKAECEDYVPMIGFSGKA-ESSFS- 122

Query: 59  DEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCS 118
           DE+SCK+PKD   KAK+SR YVR + S+++LIV+DGYQWRKYGQKVTRDNPSPRAYFKCS
Sbjct: 123 DEDSCKKPKDC-IKAKISRAYVRPNPSDNSLIVRDGYQWRKYGQKVTRDNPSPRAYFKCS 181

Query: 119 FAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVAT--IGNPIHVS 176
           FAPSCPVKKKVQRSAEDPSILVATYEGEHNH Q +   A  SLSP+   +     P+  S
Sbjct: 182 FAPSCPVKKKVQRSAEDPSILVATYEGEHNHEQHS-PPALSSLSPNGGTSNPRSAPVSSS 240

Query: 177 AASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAA 236
           +++   S+ PT TL++++P  L +D +  + QQ++ PAI QILVQQMA++LT+DPNFTAA
Sbjct: 241 SSAPAKSSPPTVTLELMKPTGLGNDTQNPT-QQVDEPAIQQILVQQMAASLTRDPNFTAA 299

Query: 237 LAAAISGRFAD 247
           LA+AISG+  D
Sbjct: 300 LASAISGKVLD 310

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115864|ref|XP_002332076.1| predicted protein [Populus trichocarpa] gi|222831962|gb|EEE70439.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 144/256 (56%), Positives = 176/256 (68%), Gaps = 12/256 (4%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNTENEV-GISKKRKAESEDHCHTIGFNVHATESSTSTD 59
           ML+++C+NYN LR Q MD M KN E E+ G SKKRK+ S ++ +     ++    S+STD
Sbjct: 73  MLTVMCENYNALRNQLMDCMCKNGEKELHGPSKKRKSASNNN-NDNNIAMNGNSESSSTD 131

Query: 60  EESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSF 119
           EE  K+P++   KAK SR YV+    + +LIVKDGYQWRKYGQKVTRDNPSPRAYFKCSF
Sbjct: 132 EELSKKPREEVIKAKTSRAYVKTEAGDKSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSF 191

Query: 120 APSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGN-PIHVSAA 178
           APSCPVKKKVQRS +D S+LVATYEGEHNHP P+    E +   SH  T+G+ P   S A
Sbjct: 192 APSCPVKKKVQRSIDDQSVLVATYEGEHNHPHPS---MEATSGSSHGLTLGSVPCSASLA 248

Query: 179 SSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALA 238
           S   S     TLD+ +     D   KSS  + +AP + Q LV+QMAS+LTKDPNFTAALA
Sbjct: 249 S---SGKTNITLDLTKSKSSND--AKSSKPKTDAPEVRQFLVEQMASSLTKDPNFTAALA 303

Query: 239 AAISGRFADQARTQRW 254
           AAISGR   Q  T +W
Sbjct: 304 AAISGRMLQQNHT-KW 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121383|gb|ACV92011.1| WRKY transcription factor 9 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 144/257 (56%), Positives = 191/257 (74%), Gaps = 11/257 (4%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNTENEV----GISKKRKAESEDHCHTIGFNVHATESST 56
           +L ++C+ Y  L++   DL +KN+E E+     IS KRKAESED+ + I         S+
Sbjct: 70  VLGVVCEKYLTLQKHLADLTSKNSEKELITTPVISMKRKAESEDYSNVINTINGGNTESS 129

Query: 57  STDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFK 116
           S+DE+S KRP++N  K K+SR Y R + S+++L+V+DGYQWRKYGQKVTRDNPSPRAYFK
Sbjct: 130 SSDEDSSKRPQEN-LKTKISRAYFRTNASDTSLVVRDGYQWRKYGQKVTRDNPSPRAYFK 188

Query: 117 CSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVS 176
           CSFAPSCPVKKKVQ+SAE+PSILVATYEGEHNH   + S+ +LSL  S  ++ G    V 
Sbjct: 189 CSFAPSCPVKKKVQKSAENPSILVATYEGEHNH--ASQSQPDLSLGSSQSSSFG---PVP 243

Query: 177 AASSMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAA 236
           + SS+ ++ PT TLD+IQ G   D AKK+  + ++AP + ++LVQQMAS+LT+DPNFTAA
Sbjct: 244 SPSSIRTSVPTVTLDLIQSGMHVDSAKKTVQENLQAPEVQKVLVQQMASSLTRDPNFTAA 303

Query: 237 LAAAISGRFADQARTQR 253
           LAAAISGRF +Q R ++
Sbjct: 304 LAAAISGRF-NQTRIEK 319

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637165|gb|ACU18913.1| unknown [Glycine max]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 139/249 (55%), Positives = 181/249 (72%), Gaps = 11/249 (4%)

Query: 1   MLSILCKNYNNLRQQYMDLMNKNTENEVG-ISKKRKAESEDHCHT--IGFNVHATESSTS 57
           MLS++C+NYN LR   M+ M KN E EV   SKKRK+ES ++ ++  +G N    ESS S
Sbjct: 68  MLSVVCENYNTLRSHLMEYMRKNGEKEVSPTSKKRKSESSNNNNSNLMGTNNGNPESS-S 126

Query: 58  TDEESCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKC 117
           TDEESCK+P++   KAK+SR YVR   S+++LIVKDGYQWRKYGQKVTRDNP PRAYFKC
Sbjct: 127 TDEESCKKPREETVKAKISRVYVRTESSDTSLIVKDGYQWRKYGQKVTRDNPYPRAYFKC 186

Query: 118 SFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSA 177
           SFAPSCPVKKKVQRS +D S+L+ATYEGEHNHPQ + S+ E +       T+G+   V  
Sbjct: 187 SFAPSCPVKKKVQRSVDDHSVLLATYEGEHNHPQAS-SQMEATSGSGRSVTLGS---VPC 242

Query: 178 ASSMLSASPT-ATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAA 236
           ++S+ +++PT  TLD+ +     D   KS+  + ++P + Q+LV+QMA++LT DPNF AA
Sbjct: 243 SASLSTSTPTLVTLDLTKSKGSNDS--KSTKPKGDSPKVPQVLVEQMATSLTTDPNFRAA 300

Query: 237 LAAAISGRF 245
           L AAISGR 
Sbjct: 301 LVAAISGRL 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2025687	302	WRKY40 "WRKY DNA-binding prote	0.945	0.801	0.496	1.7e-57
TAIR|locus:2124874	310	WRKY18 "WRKY DNA-binding prote	0.488	0.403	0.577	1.6e-47
TAIR|locus:2047395	271	WRKY60 "WRKY DNA-binding prote	0.535	0.505	0.493	5.3e-45
UNIPROTKB|Q6IEL0	348	WRKY71 "Transcription factor W	0.703	0.517	0.492	7.6e-44
TAIR|locus:2034964	480	WRKY61 "WRKY DNA-binding prote	0.410	0.218	0.473	1.2e-28
TAIR|locus:2120623	538	WRKY31 "WRKY DNA-binding prote	0.464	0.221	0.444	3.6e-28
TAIR|locus:2199317	374	WRKY9 "WRKY DNA-binding protei	0.335	0.229	0.560	9.1e-25
TAIR|locus:2137179	528	WRKY42 [Arabidopsis thaliana (	0.464	0.225	0.433	7.1e-23
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.441	0.283	0.404	2.2e-22
TAIR|locus:2150876	548	WRKY72 "WRKY DNA-binding prote	0.601	0.281	0.384	3.4e-22

TAIR|locus:2025687 WRKY40 "WRKY DNA-binding protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 131/264 (49%), Positives = 174/264 (65%)

Query:     1 MLSILCKNYNNLRQQYMDLMNKN--TE-NEVGISKKRKAES-ED--HCHTIGFNVHAXXX 54
             ML+++C NYN LR+Q M+ +NK+  TE +++   KKRK+ + ED   C  IG  V +   
Sbjct:    50 MLTLMCDNYNVLRKQLMEYVNKSNITERDQISPPKKRKSPAREDAFSCAVIG-GV-SESS 107

Query:    55 XXXXXXXXCKRPKDNNT-KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRA 113
                     CK+ ++    K KVSR Y +   S++TL+VKDGYQWRKYGQKVTRDNPSPRA
Sbjct:   108 STDQDEYLCKKQREETVVKEKVSRVYYKTEASDTTLVVKDGYQWRKYGQKVTRDNPSPRA 167

Query:   114 YFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT--DSKAELSLSPSHVATIGN 171
             YFKC+ APSC VKKKVQRS ED S+LVATYEGEHNHP P+  DS   L+   SH  +   
Sbjct:   168 YFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNHPMPSQIDSNNGLNRHISHGGSAST 227

Query:   172 PIHVSAASSMLSASPTATLDMIQPGFLFDDAKK--SSVQQIEAPAIHQILVQQMASNLTK 229
             P+  +  SS+    P  T+DMI+       +KK  S   +I+ P + ++LV+QMAS+LTK
Sbjct:   228 PVAANRRSSL--TVPVTTVDMIE-------SKKVTSPTSRIDFPQVQKLLVEQMASSLTK 278

Query:   230 DPNFTAALAAAISGRFADQARTQR 253
             DPNFTAALAAA++G+   Q  T++
Sbjct:   279 DPNFTAALAAAVTGKLYQQNHTEK 302

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0050832 "defense response to fungus" evidence=IEP;RCA

GO:0050691 "regulation of defense response to virus by host" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

TAIR|locus:2124874 WRKY18 "WRKY DNA-binding protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
 Identities = 78/135 (57%), Positives = 92/135 (68%)

Query:    28 VGISK---KRKAESEDHCHTIGFNVHAXXXXXXXXXXXCKRP-KDNNTKAKVSRFYVRAS 83
             +G+S    +  + +EDH H      H            CKRP  D+  KAKVS  YV   
Sbjct:   114 IGLSSGKTENSSSNEDHHH------HHQQHEQKNQLLSCKRPVTDSFNKAKVSTVYVPTE 167

Query:    84 DSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATY 143
              S+++L VKDG+QWRKYGQKVTRDNPSPRAYF+CSFAPSCPVKKKVQRSAEDPS+LVATY
Sbjct:   168 TSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATY 227

Query:   144 EGEHNHPQPTDSKAE 158
             EG HNH  P  S+ +
Sbjct:   228 EGTHNHLGPNASEGD 242

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IEP

GO:0050691 "regulation of defense response to virus by host" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

TAIR|locus:2047395 WRKY60 "WRKY DNA-binding protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
 Identities = 79/160 (49%), Positives = 100/160 (62%)

Query:     1 MLSILCKNY---NNLRQQYMDLMNKNTEN--EVGISKKRKAESEDHCHT-IGFNVHAXXX 54
             ML+ +C+ Y   NNL ++     +  + N     ++ KRK E ++   + IG ++     
Sbjct:    62 MLARVCEKYYALNNLMEELQSRKSPESVNFQNKQLTGKRKQELDEFVSSPIGLSLG---- 117

Query:    55 XXXXXXXXCKRPKDN--NTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPR 112
                        P +N  N KA VS  Y  A  S+++L VKDGYQWRKYGQK+TRDNPSPR
Sbjct:   118 -----------PIENITNDKATVSTAYFAAEKSDTSLTVKDGYQWRKYGQKITRDNPSPR 166

Query:   113 AYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 152
             AYF+CSF+PSC VKKKVQRSAEDPS LVATYEG HNH  P
Sbjct:   167 AYFRCSFSPSCLVKKKVQRSAEDPSFLVATYEGTHNHTGP 206

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IEP;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

UNIPROTKB|Q6IEL0 WRKY71 "Transcription factor WRKY71" [Oryza sativa Indica Group (taxid:39946)]

 Score = 439 (159.6 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 95/193 (49%), Positives = 125/193 (64%)

Query:    63 CKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPS 122
             CKR ++   K K+S+ YV A  S+ +L+VKDGYQWRKYGQKVT+DNP PRAYF+CSFAP+
Sbjct:   165 CKRIREE-CKPKISKLYVHADPSDLSLVVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPA 223

Query:   123 CPVKKKVQRSAEDPSILVATYEGEHNH---PQPTDSKAELSLSPSHVATIGNPIHVSAAS 179
             CPVKKKVQRSAED +ILVATYEGEHNH   P P  S A+ S      A  G P H  AA+
Sbjct:   224 CPVKKKVQRSAEDNTILVATYEGEHNHGQPPPPLQSAAQNSDGSGKSA--GKPPHAPAAA 281

Query:   180 SMLSASPTATLDMIQPGFLFDDAKKSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAA 239
                  +P       +P  +  + + ++  ++    I + L +QMA  LT+DP+F AAL  
Sbjct:   282 P---PAPVVPHRQHEPVVVNGEQQAAAASEM----IRRNLAEQMAMTLTRDPSFKAALVT 334

Query:   240 AISGRFADQARTQ 252
             A+SGR  + + T+
Sbjct:   335 ALSGRILELSPTK 347

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006952 "defense response" evidence=IMP

GO:0009685 "gibberellin metabolic process" evidence=IEP

TAIR|locus:2034964 WRKY61 "WRKY DNA-binding protein 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
 Identities = 53/112 (47%), Positives = 73/112 (65%)

Query:    74 KVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSA 133
             K +R  VR+     T+   DG QWRKYGQK+ + NP PRAY++C+ A SCPV+K+VQR +
Sbjct:   175 KKTRVSVRSRCETPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCS 232

Query:   134 EDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSMLSAS 185
             ED SIL++TYEG HNHP P  + A  S + +  + +     +S ASS  SA+
Sbjct:   233 EDMSILISTYEGTHNHPLPMSATAMASATSAAASML-----LSGASSSSSAA 279

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2120623 WRKY31 "WRKY DNA-binding protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 3.6e-28, Sum P(3) = 3.6e-28
 Identities = 60/135 (44%), Positives = 81/135 (60%)

Query:    72 KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR 131
             KA+VS   VRA   +   ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR
Sbjct:   282 KARVS---VRAR--SEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQR 336

Query:   132 SAEDPSILVATYEGEHNHPQP---------TDSKAELSLSPSHVATIG--NPIHVSAASS 180
              AED SIL+ TYEG HNHP P         T + A + LS S  +  G  NP ++ A + 
Sbjct:   337 CAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARAI 396

Query:   181 MLSASPTATLDMIQP 195
             +  +S  AT+    P
Sbjct:   397 LPCSSSMATISASAP 411

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2199317 WRKY9 "WRKY DNA-binding protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
 Identities = 51/91 (56%), Positives = 62/91 (68%)

Query:    70 NTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKV 129
             N KA+VS   VRA    +T+   DG QWRKYGQK  + NP PRAY++C+ AP CPV+K+V
Sbjct:   218 NRKARVS---VRARCETATM--NDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQV 272

Query:   130 QRSAEDPSILVATYEGEHNHPQPTDSKAELS 160
             QR  ED SIL+ TYEG HNHP P  + A  S
Sbjct:   273 QRCLEDMSILITTYEGTHNHPLPVGATAMAS 303

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2137179 WRKY42 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 7.1e-23, Sum P(2) = 7.1e-23
 Identities = 59/136 (43%), Positives = 83/136 (61%)

Query:    72 KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQR 131
             KA+VS   VRA  S + ++  DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR
Sbjct:   277 KARVS---VRAR-SEAPML-SDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQR 331

Query:   132 SAEDPSILVATYEGEHNHPQP---------TDSKAELSLSPSHVAT---IGNPIHVSAAS 179
              AED +IL+ TYEG HNHP P         T + A + LS S ++    + NP ++ A +
Sbjct:   332 CAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLART 391

Query:   180 SMLSASPTATLDMIQP 195
              +  +S  AT+    P
Sbjct:   392 ILPCSSSMATISASAP 407

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
 Identities = 49/121 (40%), Positives = 77/121 (63%)

Query:    64 KRPKDNNTKAKVSRF-YVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPS 122
             K  K N  KA+ +RF ++  SD ++   + DGY+WRKYGQK  +++P PR+Y++C+    
Sbjct:   195 KAKKKNQKKAREARFAFLTKSDIDN---LDDGYRWRKYGQKAVKNSPYPRSYYRCTTV-G 250

Query:   123 CPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSML 182
             C VKK+V+RS++DPSI++ TYEG+H HP P   +  + +  S +   G     +A+SS  
Sbjct:   251 CGVKKRVERSSDDPSIVMTTYEGQHTHPFPMTPRGHIGMLTSPILDHGA---TTASSSSF 307

Query:   183 S 183
             S
Sbjct:   308 S 308

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2150876 WRKY72 "WRKY DNA-binding protein 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 68/177 (38%), Positives = 104/177 (58%)

Query:    74 KVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSA 133
             K +R  VRA     T+   DG QWRKYGQK+ + NP PRAY++C+ AP CPV+K+VQR A
Sbjct:   211 KRARVCVRARCDTPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCA 268

Query:   134 EDPSILVATYEGEHNHPQPTDSKAELSLSPSHVATIGNPIHVSAASSML----SASPTAT 189
             +D SIL+ TYEG H+H  P        LS + +A+       SAA+SML    S+SP A 
Sbjct:   269 DDMSILITTYEGTHSHSLP--------LSATTMAST-----TSAAASMLLSGSSSSPAA- 314

Query:   190 LDMIQPGFLFDDAK-KSSVQQIEAPAIHQILVQQMASNLTKDPNFTAALAAAISGRF 245
              +MI    L+D+++  ++ +   +P +H  L   +  +LT   + +++ ++ +S  F
Sbjct:   315 -EMIGNN-LYDNSRFNNNNKSFYSPTLHSPLHPTVTLDLTAPQHSSSSSSSLLSLNF 369

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006952 "defense response" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SAH7	WRK40_ARATH	No assigned EC number	0.4962	0.9453	0.8013	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
smart00774	59	smart00774, WRKY, DNA binding domain	3e-35
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-33

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  119 bits (302), Expect = 3e-35
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query: 91  VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 149
           + DGYQWRKYGQKV + +P PR+Y++C++   CP KK+VQRS +DPS++  TYEGEH H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  115 bits (290), Expect = 2e-33
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 91  VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHP 150
           + DGY WRKYGQK  + +P PR+Y++C+  P CPVKK+V+RS++DP I+  TYEGEHNHP
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTS-PGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Query: 151 Q 151
           +
Sbjct: 60  K 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	93.73
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	92.96

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=2e-32  Score=200.80  Aligned_cols=59  Identities=59%  Similarity=1.258  Sum_probs=57.1

Q ss_pred             ccCCccccccCccccCCCCCCCcccccCCCCCCccccceeecCCCCCEEEEEeeccCCC
Q 025216           91 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH  149 (256)
Q Consensus        91 ~~DGy~WRKYGQK~ikgn~~pRsYYRCs~~~~C~akKqVQrs~~D~~i~~vtY~GeHnH  149 (256)
                      ++|||+|||||||.|+|+++||+||||++.++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999789999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=8.1e-33  Score=202.61  Aligned_cols=59  Identities=61%  Similarity=1.294  Sum_probs=52.2

Q ss_pred             ccCCccccccCccccCCCCCCCcccccCCCCCCccccceeecCCCCCEEEEEeeccCCCC
Q 025216           91 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHP  150 (256)
Q Consensus        91 ~~DGy~WRKYGQK~ikgn~~pRsYYRCs~~~~C~akKqVQrs~~D~~i~~vtY~GeHnH~  150 (256)
                      ++|||+|||||||.|+|+++||+||||++. +|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~-~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP-GCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT-TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc-ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            589999999999999999999999999995 99999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.73  E-value=0.047  Score=37.65  Aligned_cols=52  Identities=31%  Similarity=0.564  Sum_probs=27.8

Q ss_pred             cccccCCccccccCccccCCCCCCCcccccCCC--CCCccccceeecCCCCCEEEEEeeccCCC
Q 025216           88 TLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFA--PSCPVKKKVQRSAEDPSILVATYEGEHNH  149 (256)
Q Consensus        88 s~~~~DGy~WRKYGQK~ikgn~~pRsYYRCs~~--~~C~akKqVQrs~~D~~i~~vtY~GeHnH  149 (256)
                      ..++-|||.-.++...      ....|+||+..  .+|+|+=.+.  .++.  .++...++|||
T Consensus         9 ~~L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~--~~~~~~~~HnH   62 (62)
T PF04500_consen    9 PKLVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG--RVVRTNGEHNH   62 (62)
T ss_dssp             EEEEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT--EEEE-S---SS
T ss_pred             EEEEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC--EEEECCCccCC
Confidence            4567899987776555      34689999974  3799998887  3343  33344499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=92.96  E-value=0.098  Score=39.24  Aligned_cols=30  Identities=33%  Similarity=0.565  Sum_probs=26.3

Q ss_pred             CCCccccceeecCCCCCEEEEEeeccCCCCC
Q 025216          121 PSCPVKKKVQRSAEDPSILVATYEGEHNHPQ  151 (256)
Q Consensus       121 ~~C~akKqVQrs~~D~~i~~vtY~GeHnH~~  151 (256)
                      .+|+|+=.|-+.. |....++.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence            5999999998876 66788899999999987

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	256
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-17
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		2e-17

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 90  IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 149
           IV DGY+WRKYGQK  + +P PR+Y++CS +P CPVKK V+RS+ D  +L+ TYEG+H+H
Sbjct: 13  IVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTKLLITTYEGKHDH 71
Query: 150 PQP 152
             P
Sbjct: 72  DMP 74

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 90  IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 149
           ++ DGY+WRKYGQKV + NP PR+Y+KC+  P C V+K V+R+A DP  +V TYEG+HNH
Sbjct: 16  LLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGKHNH 74
Query: 150 PQP 152
             P
Sbjct: 75  DLP 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	1e-37
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	8e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  126 bits (317), Expect = 1e-37
 Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 76  SRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAED 135
           SR  V         IV DGY+WRKYGQK  + +P PR+Y++CS +P CPVKK V+RS+ D
Sbjct: 1   SRIVVHTQTLFD--IVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHD 57

Query: 136 PSILVATYEGEHNHPQPT 153
             +L+ TYEG+H+H  P 
Sbjct: 58  TKLLITTYEGKHDHDMPP 75

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  124 bits (312), Expect = 8e-37
 Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 73  AKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRS 132
                  V+ +      ++ DGY+WRKYGQKV + NP PR+Y+KC+  P C V+K V+R+
Sbjct: 1   GSSGSSGVQTTSEVD--LLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERA 57

Query: 133 AEDPSILVATYEGEHNHPQP 152
           A DP  +V TYEG+HNH  P
Sbjct: 58  ATDPKAVVTTYEGKHNHDLP 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 5e-06
 Identities = 39/245 (15%), Positives = 77/245 (31%), Gaps = 63/245 (25%)

Query: 3   SILCKNYNNLRQQYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNVHATESSTSTDEES 62
            + CK    +   +++L N N+   V          +   + I  N  +    +S  +  
Sbjct: 175 KVQCKMDFKI--FWLNLKNCNSPETV------LEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 63  CKRPKDNNTKAKVSRFYVRASDSNSTLI---VKDGYQWRKYGQKVTRDNPSPRAYFKCSF 119
                 ++ +A++ R        N  L+   V++   W                    +F
Sbjct: 227 I-----HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-------------------AF 262

Query: 120 APSCPVKKKV---QRSAEDPSILVATYEGEH--NHPQPTDSKAE--------LSLSPS-- 164
             SC    K+    R  +    L A        +H   T +  E        L   P   
Sbjct: 263 NLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 165 -HVATIGNPIHVSAASSMLSASPTATLDMIQPGFLFDDAK----KSSVQQIEAPAIHQIL 219
                  NP  +S  +  +     AT D  +   +  D      +SS+  +E PA ++ +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGL-ATWDNWK--HVNCDKLTTIIESSLNVLE-PAEYRKM 374

Query: 220 VQQMA 224
             +++
Sbjct: 375 FDRLS 379

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	83.62

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=3.6e-35  Score=223.66  Aligned_cols=75  Identities=52%  Similarity=1.022  Sum_probs=69.6

Q ss_pred             eeEEEeecCCCCcccccCCccccccCccccCCCCCCCcccccCCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 025216           76 SRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT  153 (256)
Q Consensus        76 ~rv~vrt~~~dts~~~~DGy~WRKYGQK~ikgn~~pRsYYRCs~~~~C~akKqVQrs~~D~~i~~vtY~GeHnH~~p~  153 (256)
                      +||.|++.+ + ..+++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+.+||.+|+|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~-~-~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQT-L-FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEEC-S-SSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecC-C-CCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            478898874 3 46789999999999999999999999999998 699999999999999999999999999999886

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=1.8e-34  Score=220.76  Aligned_cols=74  Identities=50%  Similarity=1.002  Sum_probs=65.9

Q ss_pred             eEEEeecCCCCcccccCCccccccCccccCCCCCCCcccccCCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 025216           77 RFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT  153 (256)
Q Consensus        77 rv~vrt~~~dts~~~~DGy~WRKYGQK~ikgn~~pRsYYRCs~~~~C~akKqVQrs~~D~~i~~vtY~GeHnH~~p~  153 (256)
                      +|.+++.+.  ..+++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         5 ~~~~~t~s~--~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            5 SSGVQTTSE--VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ---CCCCCC--CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             eEEEeccCC--CCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            566777643  45799999999999999999999999999998 799999999999999999999999999999874

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=83.62  E-value=0.7  Score=34.21  Aligned_cols=53  Identities=17%  Similarity=0.347  Sum_probs=34.7

Q ss_pred             cccccCCccccccCccccCCCCCCCcccccCCC--CCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 025216           88 TLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFA--PSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT  153 (256)
Q Consensus        88 s~~~~DGy~WRKYGQK~ikgn~~pRsYYRCs~~--~~C~akKqVQrs~~D~~i~~vtY~GeHnH~~p~  153 (256)
                      ..++-|||.-.+--+      ...+.|.+|+..  .+|.|+=....  ++     +...+.|||++..
T Consensus        21 ~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~~   75 (87)
T 2rpr_A           21 RFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPDL   75 (87)
T ss_dssp             EEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCCH
T ss_pred             cEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCch
Confidence            567889998775321      123689999963  48999855442  22     2356889997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	256
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	7e-29

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  102 bits (255), Expect = 7e-29
 Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 90  IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 149
           ++ DGY+WRKYGQKV + NP PR+Y+KC+  P C V+K V+R+A DP  +V TYEG+HNH
Sbjct: 9   LLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGKHNH 67

Query: 150 PQP 152
             P
Sbjct: 68  DLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4e-35  Score=219.25  Aligned_cols=65  Identities=55%  Similarity=1.137  Sum_probs=61.8

Q ss_pred             cccccCCccccccCccccCCCCCCCcccccCCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 025216           88 TLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT  153 (256)
Q Consensus        88 s~~~~DGy~WRKYGQK~ikgn~~pRsYYRCs~~~~C~akKqVQrs~~D~~i~~vtY~GeHnH~~p~  153 (256)
                      ..+++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+++||.+|+|||+|+|||+.|+
T Consensus         7 ~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           7 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            35789999999999999999999999999998 699999999999999999999999999999885