Citrus Sinensis ID: 025222

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
MATVTLSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKRWSYLF
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHcccccccEEEEEcccccEEEEEEcccccEEEEEHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHcc
ccEEEEEcccccccccccEEccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEcccccccEEEEEcHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccEEEcc
MATVTLSsslfstqkprtlsfsygvssdklnhtsfsgnfkfgsmkqsrrmrLVPVCRAAASVVFrdldaddfrhpldkQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGtsvlvsknqlpELHQLMTEAAEILNleapdlyvrqspvpnaytlaisgkkpFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANiltlgaytipgigGMIAQSLEEQLFRWLRAAELTCDRAALLvsqdpkrwsylf
matvtlssslfstqkprTLSFSygvssdklnhTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAallvsqdpkrwsylf
MATVTLSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKRWSYLF
************************************************RMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQD********
********SLF***************************************RLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKRWSYLF
**********FSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKRWSYLF
*ATVTL*SSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKRWSYLF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATVTLSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKRWSYLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query256 2.2.26 [Sep-21-2011]
Q8TP15294 Protease HtpX homolog 2 O yes no 0.414 0.360 0.364 7e-11
Q8PSE5294 Protease HtpX homolog 2 O yes no 0.414 0.360 0.364 2e-10
Q2RKK7299 Protease HtpX homolog OS= yes no 0.386 0.331 0.37 6e-09
Q3SW84 307 Protease HtpX homolog OS= yes no 0.296 0.247 0.381 3e-08
B5YKM8282 Protease HtpX homolog OS= yes no 0.296 0.269 0.368 7e-08
Q8THH5286 Protease HtpX homolog 1 O no no 0.355 0.318 0.336 1e-07
A1AZW2292 Protease HtpX homolog OS= yes no 0.300 0.263 0.363 1e-07
B3QED3 324 Protease HtpX homolog OS= yes no 0.382 0.302 0.342 2e-07
O58997289 Protease HtpX homolog OS= yes no 0.375 0.332 0.329 3e-07
A3CLJ7298 Protease HtpX homolog OS= yes no 0.296 0.255 0.276 3e-07
>sp|Q8TP15|HTPX2_METAC Protease HtpX homolog 2 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=htpX2 PE=3 SV=1 Back     alignment and function desciption
 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 1/107 (0%)

Query: 106 MLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFV 165
           M+L   G  + VS+++ P+LH ++T    I ++  P + + Q+ VPNA+    S  K  V
Sbjct: 61  MVLWTTGAHI-VSESEAPQLHDMVTRLCVIADIPKPQIAIVQTRVPNAFATGRSPNKAVV 119

Query: 166 VVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTI 212
            V T +++ LT  EL+AVLAHEL H+K      LT A+ ++  A+ I
Sbjct: 120 AVTTGIMDKLTPAELEAVLAHELSHVKNRDMAVLTIASFISTIAFYI 166

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|Q8PSE5|HTPX2_METMA Protease HtpX homolog 2 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=htpX2 PE=3 SV=1 Back     alignment and function description
>sp|Q2RKK7|HTPX_MOOTA Protease HtpX homolog OS=Moorella thermoacetica (strain ATCC 39073) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|Q3SW84|HTPX_NITWN Protease HtpX homolog OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|B5YKM8|HTPX_THEYD Protease HtpX homolog OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|Q8THH5|HTPX1_METAC Protease HtpX homolog 1 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=htpX1 PE=3 SV=1 Back     alignment and function description
>sp|A1AZW2|HTPX_PARDP Protease HtpX homolog OS=Paracoccus denitrificans (strain Pd 1222) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|B3QED3|HTPX_RHOPT Protease HtpX homolog OS=Rhodopseudomonas palustris (strain TIE-1) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|O58997|HTPX_PYRHO Protease HtpX homolog OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=htpX PE=3 SV=2 Back     alignment and function description
>sp|A3CLJ7|HTPX_STRSV Protease HtpX homolog OS=Streptococcus sanguinis (strain SK36) GN=htpX PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
225451439 363 PREDICTED: uncharacterized protein LOC10 0.917 0.647 0.772 1e-105
356558714329 PREDICTED: uncharacterized protein LOC10 0.820 0.638 0.847 1e-105
255536903338 metalloendopeptidase, putative [Ricinus 0.937 0.710 0.760 1e-104
224060249347 predicted protein [Populus trichocarpa] 0.906 0.668 0.787 1e-102
21553677344 unknown [Arabidopsis thaliana] 0.886 0.659 0.753 3e-98
18405231344 Peptidase family M48 family protein [Ara 0.886 0.659 0.753 3e-98
297814950344 peptidase M48 family protein [Arabidopsi 0.886 0.659 0.753 3e-98
449455858334 PREDICTED: protease HtpX homolog 1-like 0.953 0.730 0.733 9e-98
212276146248 putative peptidase M48 family protein [Z 0.812 0.838 0.778 2e-91
57899210324 peptidase M48-like [Oryza sativa Japonic 0.789 0.623 0.798 4e-91
>gi|225451439|ref|XP_002273907.1| PREDICTED: uncharacterized protein LOC100263426 [Vitis vinifera] gi|296082349|emb|CBI21354.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/251 (77%), Positives = 222/251 (88%), Gaps = 16/251 (6%)

Query: 1   MATVTLSSSLFSTQKPRTLSFSYG-VSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAA 59
           MA+V LSS++F           +G +++ K   +SF    +F  +K+++R+R V VCRAA
Sbjct: 39  MASVPLSSTVF-----------FGSITAKKSRFSSFP--LEFRPLKKTQRVR-VSVCRAA 84

Query: 60  ASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK 119
            SVVFRDLDADDFRHPLDKQNTL+LRAIPGLN++G+ALLGTVTEQ+MLLENIGTSVLVSK
Sbjct: 85  -SVVFRDLDADDFRHPLDKQNTLILRAIPGLNEIGKALLGTVTEQVMLLENIGTSVLVSK 143

Query: 120 NQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE 179
           NQL +LHQLM EAAEILNL+APDLY+RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE
Sbjct: 144 NQLSDLHQLMLEAAEILNLDAPDLYIRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE 203

Query: 180 LQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCD 239
           LQAVLAHELGHLKCDHGVWLTFANILTLGAY++PG+GG+IA+ LEEQLFRWLRAAELTCD
Sbjct: 204 LQAVLAHELGHLKCDHGVWLTFANILTLGAYSLPGLGGLIARQLEEQLFRWLRAAELTCD 263

Query: 240 RAALLVSQDPK 250
           RAALLV+QDPK
Sbjct: 264 RAALLVAQDPK 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356558714|ref|XP_003547648.1| PREDICTED: uncharacterized protein LOC100776801 [Glycine max] Back     alignment and taxonomy information
>gi|255536903|ref|XP_002509518.1| metalloendopeptidase, putative [Ricinus communis] gi|223549417|gb|EEF50905.1| metalloendopeptidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224060249|ref|XP_002300105.1| predicted protein [Populus trichocarpa] gi|222847363|gb|EEE84910.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|21553677|gb|AAM62770.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18405231|ref|NP_566808.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|30688648|ref|NP_850640.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|9279635|dbj|BAB01093.1| unnamed protein product [Arabidopsis thaliana] gi|15010606|gb|AAK73962.1| AT3g27110/MOJ10_21 [Arabidopsis thaliana] gi|27363402|gb|AAO11620.1| At3g27110/MOJ10_21 [Arabidopsis thaliana] gi|222423154|dbj|BAH19556.1| AT3G27110 [Arabidopsis thaliana] gi|332643747|gb|AEE77268.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|332643748|gb|AEE77269.1| Peptidase family M48 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297814950|ref|XP_002875358.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] gi|297321196|gb|EFH51617.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449455858|ref|XP_004145667.1| PREDICTED: protease HtpX homolog 1-like [Cucumis sativus] gi|449521182|ref|XP_004167609.1| PREDICTED: protease HtpX homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|212276146|ref|NP_001130200.1| putative peptidase M48 family protein [Zea mays] gi|194688526|gb|ACF78347.1| unknown [Zea mays] gi|414876779|tpg|DAA53910.1| TPA: putative peptidase M48 family protein [Zea mays] Back     alignment and taxonomy information
>gi|57899210|dbj|BAD87359.1| peptidase M48-like [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
TAIR|locus:2092010344 AT3G27110 [Arabidopsis thalian 0.917 0.683 0.743 8.3e-90
UNIPROTKB|O53978 348 Rv1977 "Uncharacterized protei 0.738 0.543 0.309 2.9e-23
TIGR_CMR|CHY_0108281 CHY_0108 "peptidase, M48 famil 0.296 0.270 0.342 1.3e-06
UNIPROTKB|P65815286 htpX "Protease HtpX homolog" [ 0.292 0.262 0.32 4.9e-05
TIGR_CMR|GSU_1189 316 GSU_1189 "peptidase, M48 famil 0.343 0.278 0.326 0.00013
UNIPROTKB|Q9KSY9287 htpX "Protease HtpX" [Vibrio c 0.5 0.445 0.263 0.00055
TIGR_CMR|VC_1117287 VC_1117 "heat shock protein Ht 0.5 0.445 0.263 0.00055
UNIPROTKB|Q8EDL5287 htpX "Protease HtpX" [Shewanel 0.554 0.494 0.269 0.00071
TIGR_CMR|SO_2728287 SO_2728 "peptidase HtpX" [Shew 0.554 0.494 0.269 0.00071
TAIR|locus:2092010 AT3G27110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 183/246 (74%), Positives = 207/246 (84%)

Query:     6 LSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSR-RMRLVPVCRAAASVVF 64
             LS SL   + P+ + FS G  S      S+ G   FG+ K  R R+R VP+CRA   ++F
Sbjct:    20 LSRSL-GYRLPKKVGFSSGRRS-----VSYIG---FGAEKVGRFRVR-VPICRAVPPLLF 69

Query:    65 RDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPE 124
             +DLDADDFRHP DKQNTLLLRAIPGLN+ G+ALLG++TEQIMLLENIGTSVLVSKNQL +
Sbjct:    70 KDLDADDFRHPFDKQNTLLLRAIPGLNEFGKALLGSMTEQIMLLENIGTSVLVSKNQLSD 129

Query:   125 LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVL 184
             LH L+ EAAEILN+EAPDLYVRQSPVPNAYTLAISGKKPF+VVHTSL+ELLT  ELQAVL
Sbjct:   130 LHGLLVEAAEILNIEAPDLYVRQSPVPNAYTLAISGKKPFIVVHTSLIELLTSAELQAVL 189

Query:   185 AHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALL 244
             AHELGHLKCDHGVWLTFANILTLGAYT+P  G MIA++LEEQL RWLR+AELTCDRAALL
Sbjct:   190 AHELGHLKCDHGVWLTFANILTLGAYTVPAFGQMIARTLEEQLLRWLRSAELTCDRAALL 249

Query:   245 VSQDPK 250
             V+QDPK
Sbjct:   250 VAQDPK 255
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
UNIPROTKB|O53978 Rv1977 "Uncharacterized protein" [Mycobacterium tuberculosis H37Rv (taxid:83332)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0108 CHY_0108 "peptidase, M48 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P65815 htpX "Protease HtpX homolog" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1189 GSU_1189 "peptidase, M48 family" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSY9 htpX "Protease HtpX" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1117 VC_1117 "heat shock protein HtpX" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EDL5 htpX "Protease HtpX" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2728 SO_2728 "peptidase HtpX" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
COG0501302 COG0501, HtpX, Zn-dependent protease with chaperon 4e-19
pfam01435223 pfam01435, Peptidase_M48, Peptidase family M48 1e-15
PRK02391296 PRK02391, PRK02391, heat shock protein HtpX; Provi 2e-14
PRK03982288 PRK03982, PRK03982, heat shock protein HtpX; Provi 1e-12
PRK01265 324 PRK01265, PRK01265, heat shock protein HtpX; Provi 8e-10
PRK04897298 PRK04897, PRK04897, heat shock protein HtpX; Provi 1e-09
PRK01345 317 PRK01345, PRK01345, heat shock protein HtpX; Provi 2e-09
PRK02870336 PRK02870, PRK02870, heat shock protein HtpX; Provi 1e-08
PRK03001283 PRK03001, PRK03001, M48 family peptidase; Provisio 1e-08
PRK03072288 PRK03072, PRK03072, heat shock protein HtpX; Provi 1e-05
PRK05457284 PRK05457, PRK05457, heat shock protein HtpX; Provi 8e-05
>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score = 84.2 bits (208), Expect = 4e-19
 Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 25/190 (13%)

Query: 87  IPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK--NQLPELHQLMTEAAEILNLEA---- 140
           I  L      L+  +  + ++L+++G   L             L+ + AE+         
Sbjct: 58  IALLLAFAALLISLLFSKALVLKSLGALTLSEPILLAPRLYAVLLLKVAELARQAGIPHM 117

Query: 141 PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDH----- 195
           P++Y+ ++P PNA+ L    K   VVV T L++LL   EL+AVLAHELGH+K  H     
Sbjct: 118 PEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLLNDDELEAVLAHELGHIKNRHTLVRL 177

Query: 196 ----GVWLTFANILTL-----GAYTIPGIGGMIAQSLEEQLF-----RWLRAAELTCDRA 241
                +   F  + TL               ++   L   L       + R  E   DR 
Sbjct: 178 TLRGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALFLATLLVLAFSRKREYEADRF 237

Query: 242 ALLVSQDPKR 251
           A  ++   K 
Sbjct: 238 AAKLTGPEKL 247

Length = 302
>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48 Back     alignment and domain information
>gnl|CDD|179418 PRK02391, PRK02391, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235186 PRK03982, PRK03982, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|234931 PRK01265, PRK01265, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235318 PRK04897, PRK04897, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|234944 PRK01345, PRK01345, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235081 PRK02870, PRK02870, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|179524 PRK03001, PRK03001, M48 family peptidase; Provisional Back     alignment and domain information
>gnl|CDD|235102 PRK03072, PRK03072, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235478 PRK05457, PRK05457, heat shock protein HtpX; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 256
PRK04897298 heat shock protein HtpX; Provisional 99.97
PRK02870336 heat shock protein HtpX; Provisional 99.96
PRK02391296 heat shock protein HtpX; Provisional 99.96
PRK03001283 M48 family peptidase; Provisional 99.96
PRK03072288 heat shock protein HtpX; Provisional 99.96
PRK01345317 heat shock protein HtpX; Provisional 99.96
PRK03982288 heat shock protein HtpX; Provisional 99.95
PRK01265324 heat shock protein HtpX; Provisional 99.94
PRK05457284 heat shock protein HtpX; Provisional 99.94
COG0501302 HtpX Zn-dependent protease with chaperone function 99.9
PF01435226 Peptidase_M48: Peptidase family M48 This is family 99.87
COG4783 484 Putative Zn-dependent protease, contains TPR repea 99.68
PF05569299 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0 99.68
KOG2719428 consensus Metalloprotease [General function predic 99.6
KOG2661424 consensus Peptidase family M48 [Posttranslational 99.49
COG4219337 MecR1 Antirepressor regulating drug resistance, pr 99.47
COG4784 479 Putative Zn-dependent protease [General function p 99.46
PF06114122 DUF955: Domain of unknown function (DUF955); Inter 97.8
PF04228292 Zn_peptidase: Putative neutral zinc metallopeptida 97.45
PF01863205 DUF45: Protein of unknown function DUF45; InterPro 97.17
PRK04351149 hypothetical protein; Provisional 96.64
COG1451223 Predicted metal-dependent hydrolase [General funct 96.46
smart00731146 SprT SprT homologues. Predicted to have roles in t 96.08
PF13203 292 DUF2201_N: Putative metallopeptidase domain 95.79
PF10263157 SprT-like: SprT-like family; InterPro: IPR006640 T 95.69
PF10463206 Peptidase_U49: Peptidase U49; InterPro: IPR019504 94.98
COG2856213 Predicted Zn peptidase [Amino acid transport and m 94.75
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 94.71
PRK04860160 hypothetical protein; Provisional 94.38
PF1369979 DUF4157: Domain of unknown function (DUF4157) 93.98
PF10026195 DUF2268: Predicted Zn-dependent protease (DUF2268) 93.87
PF04298222 Zn_peptidase_2: Putative neutral zinc metallopepti 92.82
COG3091156 SprT Zn-dependent metalloprotease, SprT family [Ge 92.46
PRK09672305 phage exclusion protein Lit; Provisional 91.78
PF14247220 DUF4344: Domain of unknown function (DUF4344) 90.64
TIGR00181 591 pepF oligoendopeptidase F. This family represents 89.04
COG1164 598 Oligoendopeptidase F [Amino acid transport and met 88.2
COG4900133 Predicted metallopeptidase [General function predi 87.32
PF02031132 Peptidase_M7: Streptomyces extracellular neutral p 86.84
COG3590654 PepO Predicted metalloendopeptidase [Posttranslati 86.1
COG2321295 Predicted metalloprotease [General function predic 85.5
PF12388211 Peptidase_M57: Dual-action HEIGH metallo-peptidase 84.92
PF08325186 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1 84.08
TIGR02289 549 M3_not_pepF oligoendopeptidase, M3 family. This fa 84.0
PF13485128 Peptidase_MA_2: Peptidase MA superfamily 83.55
COG2738226 Predicted Zn-dependent protease [General function 80.72
TIGR02290 587 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M 80.5
PF09768173 Peptidase_M76: Peptidase M76 family; InterPro: IPR 80.24
>PRK04897 heat shock protein HtpX; Provisional Back     alignment and domain information 
Probab=99.97  E-value=8.6e-31  Score=239.45  Aligned_cols=209  Identities=18%  Similarity=0.237  Sum_probs=148.2

Q ss_pred             cccccccc-eeceeeeEeeeeeeeeecCCcccccCccchHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHcCCccccCC
Q 025222           41 FGSMKQSR-RMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK  119 (256)
Q Consensus        41 ~~~~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~hp~d~~~~~~l~~ipgl~~l~~~~~~~~~~r~~~~~~~g~~v~v~~  119 (256)
                      |.|+++|+ ||.+++ ..+...+.+.|...+.+..+ +.....++..+   ..++..++.+++...+..+..+ .+++++
T Consensus         3 ~~~~~~n~~~t~~ll-~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-a~~v~~   76 (298)
T PRK04897          3 YEQIASNKRKTVFLL-VVFFLLLALVGAAVGYLFLN-SGLGGLIIALI---IGVIYALIMIFQSTNVVMSMNH-AREVTE   76 (298)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccc-cchhHHHHHHH---HHHHHHHHHHHhhHHHHHHhCC-CEECCh
Confidence            67899999 887655 44444444545332211111 11111111111   1234566777778777777664 568899


Q ss_pred             CCcHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcchHHH
Q 025222          120 NQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWL  199 (256)
Q Consensus       120 ~~~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~~~  199 (256)
                      +|.|++++.++++|++.|+|.|++|+++++.+|||++|.++.++.|++++|+++.+++||+++|+|||+||++++|..++
T Consensus        77 ~~~p~L~~~v~~la~~~gip~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgHi~~~d~~~~  156 (298)
T PRK04897         77 EEAPELWHIVEDMAMVAQIPMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIMNREELEGVIGHEISHIRNYDIRLS  156 (298)
T ss_pred             hhhHHHHHHHHHHHHHcCCCCCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhCCHHHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999999999999999999877788999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH----------hc------------hh---hH-HH------HHHHHH--HHHHHHhHHHHHHHHHHHHHh
Q 025222          200 TFANILTLGAY----------TI------------PG---IG-GM------IAQSLE--EQLFRWLRAAELTCDRAALLV  245 (256)
Q Consensus       200 ~l~~~L~~~~~----------~~------------p~---lg-~~------~~~~l~--~~l~~~sR~~E~~ADr~Al~~  245 (256)
                      ++...+.....          +.            +.   +. .+      +...+.  .....+||.+|++||++|++.
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~~AD~~A~~l  236 (298)
T PRK04897        157 TIAVALASAITLLSDIAGRMMWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREYLADASSVEL  236 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            76543321110          00            00   00 00      011111  112478999999999999999


Q ss_pred             cCCchHHhcc
Q 025222          246 SQDPKRWSYL  255 (256)
Q Consensus       246 ~~dp~a~~~~  255 (256)
                      ++||++.+++
T Consensus       237 t~~p~~La~A  246 (298)
T PRK04897        237 TRNPQGLISA  246 (298)
T ss_pred             hCCHHHHHHH
Confidence            9999988775

>PRK02870 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK02391 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03001 M48 family peptidase; Provisional Back     alignment and domain information
>PRK03072 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01345 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03982 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01265 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK05457 heat shock protein HtpX; Provisional Back     alignment and domain information
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2719 consensus Metalloprotease [General function prediction only] Back     alignment and domain information
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG4784 Putative Zn-dependent protease [General function prediction only] Back     alignment and domain information
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function Back     alignment and domain information
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases Back     alignment and domain information
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori Back     alignment and domain information
>PRK04351 hypothetical protein; Provisional Back     alignment and domain information
>COG1451 Predicted metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>smart00731 SprT SprT homologues Back     alignment and domain information
>PF13203 DUF2201_N: Putative metallopeptidase domain Back     alignment and domain information
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT) Back     alignment and domain information
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism] Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>PRK04860 hypothetical protein; Provisional Back     alignment and domain information
>PF13699 DUF4157: Domain of unknown function (DUF4157) Back     alignment and domain information
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function Back     alignment and domain information
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases Back     alignment and domain information
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only] Back     alignment and domain information
>PRK09672 phage exclusion protein Lit; Provisional Back     alignment and domain information
>PF14247 DUF4344: Domain of unknown function (DUF4344) Back     alignment and domain information
>TIGR00181 pepF oligoendopeptidase F Back     alignment and domain information
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism] Back     alignment and domain information
>COG4900 Predicted metallopeptidase [General function prediction only] Back     alignment and domain information
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2321 Predicted metalloprotease [General function prediction only] Back     alignment and domain information
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57 Back     alignment and domain information
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase Back     alignment and domain information
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family Back     alignment and domain information
>PF13485 Peptidase_MA_2: Peptidase MA superfamily Back     alignment and domain information
>COG2738 Predicted Zn-dependent protease [General function prediction only] Back     alignment and domain information
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family Back     alignment and domain information
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
3cqb_A107 Probable protease HTPX homolog; heat shock protein 1e-12
3c37_A253 Peptidase, M48 family; Q74D82, GSR143A, structural 8e-05
4aw6_A482 CAAX prenyl protease 1 homolog; hydrolase, M48 pep 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Length = 107 Back     alignment and structure
 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 117 VSKNQLPELHQLMT---EAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173
           +   +    H L+      A+   +  P + +  S   NA+          V V T L+ 
Sbjct: 17  IESPRNETEHWLLETVGRQAQQAGIGMPTVAIYDSADINAFATGAKRDDSLVAVSTGLLH 76

Query: 174 LLTRKELQAVLAHELGHLK 192
            +TR E +AVLAHE+ H+ 
Sbjct: 77  NMTRDEAEAVLAHEVSHIA 95
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253 Back     alignment and structure
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} Length = 482 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
4aw6_A482 CAAX prenyl protease 1 homolog; hydrolase, M48 pep 99.86
3c37_A253 Peptidase, M48 family; Q74D82, GSR143A, structural 99.85
3cqb_A107 Probable protease HTPX homolog; heat shock protein 99.79
3dte_A 301 IRRE protein; radiotolerance, gene regulation, met 96.82
3ahn_A 564 Oligopeptidase, PZ peptidase A; hydrolase, hydrola 82.99
3sks_A 567 Putative oligoendopeptidase F; structural genomics 82.54
3ce2_A 618 Putative peptidase; structural genomics, unknown f 80.72
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A Back     alignment and structure
Probab=99.86  E-value=7.8e-21  Score=182.46  Aligned_cols=138  Identities=25%  Similarity=0.245  Sum_probs=105.9

Q ss_pred             ccCCCCcHHHHHHHHHHHHHhCcCCCcEEEEe----CCCCCEEEEeecCCCCEEEECHHHHhc-----------------
Q 025222          116 LVSKNQLPELHQLMTEAAEILNLEAPDLYVRQ----SPVPNAYTLAISGKKPFVVVHTSLVEL-----------------  174 (256)
Q Consensus       116 ~v~~~~~p~L~~~l~~~~~~l~i~~p~vyv~~----~~~~NA~a~G~~~~~~~Ivl~~gLl~~-----------------  174 (256)
                      +.+|.++++|++.++++|++.|+|.|++||++    ++.+|||++|++ +++.||+.+.+++.                 
T Consensus       225 k~~Pl~dg~L~~~Ie~la~~~~fp~~~v~vv~gSkRs~~~NAy~~G~~-~~krIVl~dtLl~~~~~~~~~~~~~~~~~~~  303 (482)
T 4aw6_A          225 KFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFF-KNKRIVLFDTLLEEYSVLNKDIQEDSGMEPR  303 (482)
T ss_dssp             CEEECCSSHHHHHHHHHHHHTTCCEEEEEEECGGGTBSCCCEEEEESS-SCEEEEEEHHHHC------------------
T ss_pred             CCccCCcHHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCceEEEcCC-CCcEEEEEchHHHhccccccccccccccccc
Confidence            45778889999999999999999999999999    778999999985 45678888888887                 


Q ss_pred             --------------------CCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH------Hhc---------------h
Q 025222          175 --------------------LTRKELQAVLAHELGHLKCDHGVWLTFANILTLGA------YTI---------------P  213 (256)
Q Consensus       175 --------------------L~~~EL~aVlaHElgHi~~~H~~~~~l~~~L~~~~------~~~---------------p  213 (256)
                                          |++||++||+|||+||++++|..+++++..+....      ..+               |
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~l~~~El~aVlaHElgH~~~~~~~~~~~~~~i~~~~~~~l~~~l~~~~~l~~~~G~~~~~p  383 (482)
T 4aw6_A          304 NEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYDSQP  383 (482)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHTTCCSCCC
T ss_pred             ccccccchhhcccchhhccCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcchhhHhhcCCCCccc
Confidence                                89999999999999999999999988654432111      000               1


Q ss_pred             hh-HHHH-H----HH----HHHHHHHHhHHHHHHHHHHHHHhcCCchHHhcc
Q 025222          214 GI-GGMI-A----QS----LEEQLFRWLRAAELTCDRAALLVSQDPKRWSYL  255 (256)
Q Consensus       214 ~l-g~~~-~----~~----l~~~l~~~sR~~E~~ADr~Al~~~~dp~a~~~~  255 (256)
                      .+ +.++ .    .+    .......+||.+|++||++|++. ++|++++++
T Consensus       384 ~~~~~llv~~~i~~P~~~l~~~i~~~~SR~~E~eAD~~a~~l-g~p~~L~~A  434 (482)
T 4aw6_A          384 TLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKL-GKAKDLYSA  434 (482)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            11 1111 1    11    11234688999999999999998 678887765
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Back     alignment and structure
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A Back     alignment and structure
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A Back     alignment and structure
>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis} Back     alignment and structure
>3ce2_A Putative peptidase; structural genomics, unknown function, P protein structure initiative; 2.60A {Chlamydophila abortus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00