Citrus Sinensis ID: 025257
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 255 | 2.2.26 [Sep-21-2011] | |||||||
| P93629 | 381 | Alcohol dehydrogenase cla | N/A | no | 0.996 | 0.666 | 0.909 | 1e-135 | |
| Q96533 | 379 | Alcohol dehydrogenase cla | yes | no | 0.984 | 0.662 | 0.900 | 1e-134 | |
| Q0DWH1 | 381 | Alcohol dehydrogenase cla | yes | no | 0.984 | 0.658 | 0.908 | 1e-134 | |
| A2XAZ3 | 381 | Alcohol dehydrogenase cla | N/A | no | 0.984 | 0.658 | 0.908 | 1e-134 | |
| P80572 | 378 | Alcohol dehydrogenase cla | N/A | no | 1.0 | 0.674 | 0.874 | 1e-133 | |
| P79896 | 376 | Alcohol dehydrogenase cla | N/A | no | 0.984 | 0.667 | 0.693 | 1e-103 | |
| P86884 | 376 | Alcohol dehydrogenase cla | N/A | no | 0.992 | 0.672 | 0.691 | 1e-102 | |
| P81600 | 375 | Alcohol dehydrogenase cla | N/A | no | 0.984 | 0.669 | 0.673 | 1e-101 | |
| Q3ZC42 | 374 | Alcohol dehydrogenase cla | yes | no | 0.992 | 0.676 | 0.691 | 1e-101 | |
| P80467 | 373 | Alcohol dehydrogenase cla | N/A | no | 0.992 | 0.678 | 0.691 | 1e-100 |
| >sp|P93629|ADHX_MAIZE Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/254 (90%), Positives = 241/254 (94%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTGLG
Sbjct: 127 MMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGLG 186
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GS+VAVFGLGTVGLAVAEGAKAAGASRVIGIDID KKFD AKNFGVTEFV
Sbjct: 187 AVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNFGVTEFV 246
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPK+HDKPIQQVLVDLTDGGVDYSFECIGNVS+MRAALEC KGWGTSVIVGVAASGQEI
Sbjct: 247 NPKEHDKPIQQVLVDLTDGGVDYSFECIGNVSIMRAALECSDKGWGTSVIVGVAASGQEI 306
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSR+QVPWLVDKYMKKEIKVDEY+THNM L +IN+AF
Sbjct: 307 STRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAFHL 366
Query: 241 MHGGDCLRCVLKMQ 254
+H G CLRCVL MQ
Sbjct: 367 LHEGGCLRCVLAMQ 380
|
Zea mays (taxid: 4577) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 8EC: 4 |
| >sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/251 (90%), Positives = 239/251 (95%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMNDRKSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVPTGLG
Sbjct: 125 MMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLG 184
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVEPGS VA+FGLGTVGLAVAEGAK AGASR+IGIDID KK++ AK FGV EFV
Sbjct: 185 AVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFV 244
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDHDKPIQ+V+VDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI
Sbjct: 245 NPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 304
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSR+QVPWLV+KYM KEIKVDEY+THN+TLGEIN+AF
Sbjct: 305 STRPFQLVTGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDL 364
Query: 241 MHGGDCLRCVL 251
+H G CLRCVL
Sbjct: 365 LHEGTCLRCVL 375
|
Plays a central role in formaldehyde detoxification. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|Q0DWH1|ADHX_ORYSJ Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/251 (90%), Positives = 240/251 (95%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV TGLG
Sbjct: 127 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLG 186
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD AKNFGVTEFV
Sbjct: 187 AVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVTEFV 246
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAASGQEI
Sbjct: 247 NPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEI 306
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSRSQVPWLV+KY+ KEIKVDEYVTH+M L +IN+AF
Sbjct: 307 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDL 366
Query: 241 MHGGDCLRCVL 251
+H G CLRCVL
Sbjct: 367 LHEGGCLRCVL 377
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|A2XAZ3|ADHX_ORYSI Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/251 (90%), Positives = 240/251 (95%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV TGLG
Sbjct: 127 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLG 186
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD AKNFGVTEFV
Sbjct: 187 AVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVTEFV 246
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAASGQEI
Sbjct: 247 NPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEI 306
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSRSQVPWLV+KY+ KEIKVDEYVTH+M L +IN+AF
Sbjct: 307 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDL 366
Query: 241 MHGGDCLRCVL 251
+H G CLRCVL
Sbjct: 367 LHEGGCLRCVL 377
|
Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|P80572|ADHX_PEA Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 475 bits (1222), Expect = e-133, Method: Compositional matrix adjust.
Identities = 223/255 (87%), Positives = 241/255 (94%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MM DRKSRFS+ GKPIYHFMGTSTFSQYTVVHDVSVAKI P APLDKVCLLGCGVPTGLG
Sbjct: 124 MMADRKSRFSVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPTGLG 183
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVEPGSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID K+D AKNFGVTEF+
Sbjct: 184 AVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKYDTAKNFGVTEFI 243
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDH+KPIQQV++DLTDGGVDYSFEC+GNVSVMR+ALECCHKGWGTSVIVGVAASGQEI
Sbjct: 244 NPKDHEKPIQQVIIDLTDGGVDYSFECLGNVSVMRSALECCHKGWGTSVIVGVAASGQEI 303
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSRSQVPWLV+KY+KKEIKVDEY+THN+TL EIN+AF
Sbjct: 304 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLLEINKAFDL 363
Query: 241 MHGGDCLRCVLKMQD 255
+H G CLRCVL + D
Sbjct: 364 LHEGQCLRCVLAVHD 378
|
Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|P79896|ADHX_SPAAU Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/251 (69%), Positives = 207/251 (82%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
++ D+ SRF+ GK ++HFMGTSTFS+YTVV D+S+AK++ +AP+DKVCLLGCG+ TG G
Sbjct: 124 LLPDKTSRFTCKGKQVFHFMGTSTFSEYTVVADISLAKVNEKAPMDKVCLLGCGISTGYG 183
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG VGLAV G K AGA+R+IGID++P KF+ AK FG TEFV
Sbjct: 184 AALNTAKVEPGSTCAVFGLGAVGLAVIMGCKVAGATRIIGIDLNPAKFETAKEFGATEFV 243
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDH KPIQ+VLV++TDGGVDYSFECIGNV +MRAALE CHKGWG SVI+GVA +GQEI
Sbjct: 244 NPKDHSKPIQEVLVEMTDGGVDYSFECIGNVQIMRAALEACHKGWGESVIIGVAGAGQEI 303
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGG+KS VP LV+ YM K++KVDE+VTH + +INE F
Sbjct: 304 STRPFQLVTGRVWKGTAFGGWKSVESVPKLVEDYMSKKLKVDEFVTHTLPFEKINEGFEL 363
Query: 241 MHGGDCLRCVL 251
MH G +R VL
Sbjct: 364 MHAGKSIRTVL 374
|
Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Sparus aurata (taxid: 8175) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|P86884|ADHX_SCYCA Alcohol dehydrogenase class-3 OS=Scyliorhinus canicula PE=1 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/253 (69%), Positives = 205/253 (81%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D+ SRF+ G+ +YH+MGTSTFS+YTVV D+SVAKID APLDKVCLLGCG+ TG G
Sbjct: 124 LMPDKTSRFTCKGQLLYHYMGTSTFSEYTVVADISVAKIDEAAPLDKVCLLGCGISTGYG 183
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG VGLA G KAAGA+R+IG+D++ KF +AK FG TE++
Sbjct: 184 AAVNTAKVEPGSTCAVFGLGGVGLAGIMGCKAAGATRIIGVDLNKDKFTKAKEFGATEYI 243
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKD+DKPIQ+VLV LTDGGVDYSFECIGNV MRAALE CHKGWGTSVIVGVA +G EI
Sbjct: 244 NPKDYDKPIQEVLVGLTDGGVDYSFECIGNVKTMRAALEACHKGWGTSVIVGVAPAGHEI 303
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K++KVDE+VTH + +INE+F
Sbjct: 304 ATRPFQLVTGRTWKGTAFGGWKSVESVPKLVKEYMAKKLKVDEFVTHTLPFNQINESFEL 363
Query: 241 MHGGDCLRCVLKM 253
MH G +RCVL
Sbjct: 364 MHAGKSIRCVLSF 376
|
Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Scyliorhinus canicula (taxid: 7830) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|P81600|ADHH_GADMO Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/251 (67%), Positives = 203/251 (80%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK ++HFMGTSTFS+YTVV D+S+A +DP+APLDKVCLLGCG+ TG G
Sbjct: 123 LMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVADISLANVDPKAPLDKVCLLGCGISTGYG 182
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG VGLA G K AGA+R+IG+DI+P+KF +A FG TE +
Sbjct: 183 AALNTAKVEPGSTCAVFGLGAVGLAAIMGCKVAGATRIIGVDINPEKFGKAAEFGATECL 242
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDH +P+Q+VLV++TDGGVDYSFECIGNV +MR+ALE CHKGWG SVI+GVA +GQEI
Sbjct: 243 NPKDHARPVQEVLVEMTDGGVDYSFECIGNVEIMRSALEACHKGWGESVIIGVAGAGQEI 302
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGRVWK TAFGG+KS VP LV+ YM K++KVDE+VTH + INE F
Sbjct: 303 ATRPFQLVTGRVWKATAFGGWKSVESVPKLVEDYMNKKLKVDEFVTHTLPFDSINEGFDL 362
Query: 241 MHGGDCLRCVL 251
MH G +RCVL
Sbjct: 363 MHAGKSIRCVL 373
|
Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Gadus morhua (taxid: 8049) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|Q3ZC42|ADHX_BOVIN Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/253 (69%), Positives = 205/253 (81%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A N AKVEPGS AVFGLG VGLAV G K AGA+R+IG+DI+ KF RAK FG +E +
Sbjct: 182 AALNAAKVEPGSTCAVFGLGGVGLAVIMGCKMAGAARIIGVDINKDKFARAKEFGASECI 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI
Sbjct: 242 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGISVVVGVAASGEEI 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VTH++ +INEAF
Sbjct: 302 ATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHSLPFDQINEAFDL 361
Query: 241 MHGGDCLRCVLKM 253
MH G +R V+K+
Sbjct: 362 MHAGKSIRTVVKL 374
|
Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|P80467|ADHX_UROHA Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/253 (69%), Positives = 202/253 (79%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK + HFMGTSTFS+YTVV D+S+ KI+ APLDKVCLLGCGV TG G
Sbjct: 121 VMPDGTSRFTCKGKQVLHFMGTSTFSEYTVVADISLTKINASAPLDKVCLLGCGVSTGYG 180
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG VGLAV G K AGASR+IGID++ KF +AK FG TE +
Sbjct: 181 AALNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDLNKDKFAKAKEFGATECI 240
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
+P D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SVIVGVAA+GQEI
Sbjct: 241 SPADFKKPIQEVLIEMTDGGVDYSFECIGNVGVMRAALEACHKGWGVSVIVGVAAAGQEI 300
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGR WKGTAFGG+KS VP LVD+YM K++KVDE+VTH + +INEAF
Sbjct: 301 ATRPFQLVTGRTWKGTAFGGWKSVESVPKLVDEYMSKKMKVDEFVTHTLPFEQINEAFEL 360
Query: 241 MHGGDCLRCVLKM 253
MH G +R VLK
Sbjct: 361 MHAGKSIRSVLKF 373
|
Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Uromastyx hardwickii (taxid: 40250) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 255 | ||||||
| 255585914 | 379 | alcohol dehydrogenase, putative [Ricinus | 1.0 | 0.672 | 0.925 | 1e-137 | |
| 224065517 | 379 | glutathione-dependent formaldehyde dehyd | 0.996 | 0.670 | 0.917 | 1e-135 | |
| 413939460 | 255 | putative alcohol dehydrogenase superfami | 0.996 | 0.996 | 0.917 | 1e-135 | |
| 359480071 | 378 | PREDICTED: alcohol dehydrogenase class-3 | 0.996 | 0.671 | 0.921 | 1e-135 | |
| 195621922 | 381 | alcohol dehydrogenase class 3 [Zea mays] | 0.996 | 0.666 | 0.917 | 1e-135 | |
| 242063486 | 381 | hypothetical protein SORBIDRAFT_04g03705 | 0.996 | 0.666 | 0.917 | 1e-135 | |
| 325910821 | 379 | glutathione-dependent formaldehyde dehyd | 0.996 | 0.670 | 0.917 | 1e-135 | |
| 194688556 | 381 | unknown [Zea mays] gi|194707152|gb|ACF87 | 0.996 | 0.666 | 0.917 | 1e-135 | |
| 429840534 | 378 | alcohol dehydrogenase 2 [Diospyros kaki] | 0.992 | 0.669 | 0.913 | 1e-135 | |
| 195625730 | 381 | alcohol dehydrogenase class 3 [Zea mays] | 0.996 | 0.666 | 0.913 | 1e-134 |
| >gi|255585914|ref|XP_002533630.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223526488|gb|EEF28759.1| alcohol dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/255 (92%), Positives = 247/255 (96%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGVPTGLG
Sbjct: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLG 184
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KK+DRAK+FGVTEFV
Sbjct: 185 AVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKYDRAKDFGVTEFV 244
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAASGQEI
Sbjct: 245 NPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEI 304
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEY+THN+TL EIN+AF
Sbjct: 305 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNLTLVEINKAFDL 364
Query: 241 MHGGDCLRCVLKMQD 255
MH GDCLRCVL + D
Sbjct: 365 MHEGDCLRCVLSVHD 379
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065517|ref|XP_002301836.1| glutathione-dependent formaldehyde dehydrogenase [Populus trichocarpa] gi|222843562|gb|EEE81109.1| glutathione-dependent formaldehyde dehydrogenase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/254 (91%), Positives = 244/254 (96%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGVPTGLG
Sbjct: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLG 184
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GSIVA+FGLGTVGLAVAEGAK AGASR+IGIDID KKFDRAK+FGVTEFV
Sbjct: 185 AVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDRAKDFGVTEFV 244
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDHDKPIQQVL+DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI
Sbjct: 245 NPKDHDKPIQQVLIDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 304
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSRSQVP LVDKYMKKEIKVDEY+THN+TL E+N+AF
Sbjct: 305 STRPFQLVTGRVWKGTAFGGFKSRSQVPMLVDKYMKKEIKVDEYITHNLTLPEMNQAFDL 364
Query: 241 MHGGDCLRCVLKMQ 254
+H G CLRCVL MQ
Sbjct: 365 LHEGSCLRCVLDMQ 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413939460|gb|AFW74011.1| putative alcohol dehydrogenase superfamily protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/254 (91%), Positives = 243/254 (95%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTGLG
Sbjct: 1 MMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGLG 60
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GS+VAVFGLGTVGLAVAEGAKAAGASRVIGIDID KKFD AKNFGVTEFV
Sbjct: 61 AVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNFGVTEFV 120
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPK+HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI
Sbjct: 121 NPKEHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGRVWKGTAFGGFKSR+QVPWLVDKYMKKEIKVDEY+THNM L +IN+AF
Sbjct: 181 ATRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAFHL 240
Query: 241 MHGGDCLRCVLKMQ 254
+H G CLRCVL MQ
Sbjct: 241 LHEGGCLRCVLAMQ 254
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480071|ref|XP_002269325.2| PREDICTED: alcohol dehydrogenase class-3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/254 (92%), Positives = 243/254 (95%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MM+DRKSRFSING PIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVPTGLG
Sbjct: 124 MMSDRKSRFSINGTPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPTGLG 183
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GSIVAVFGLGTVGLAVAEGAK+AGASR+IG+DID KKFD AKNFGVTEFV
Sbjct: 184 AVWNTAKVESGSIVAVFGLGTVGLAVAEGAKSAGASRIIGVDIDSKKFDVAKNFGVTEFV 243
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDH+KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI
Sbjct: 244 NPKDHEKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 303
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSRSQVPWLV+KYMKKEIKVDEY+THN+TLGEINEAF
Sbjct: 304 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYMKKEIKVDEYITHNLTLGEINEAFDL 363
Query: 241 MHGGDCLRCVLKMQ 254
MH G CLRCVL M
Sbjct: 364 MHEGGCLRCVLAMH 377
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195621922|gb|ACG32791.1| alcohol dehydrogenase class 3 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/254 (91%), Positives = 243/254 (95%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTGLG
Sbjct: 127 MMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGLG 186
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GS+VAVFGLGTVGLAVAEGAKAAGASRVIGIDID KKFD AKNFGVTEFV
Sbjct: 187 AVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNFGVTEFV 246
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPK+HDKPIQQVLVDLTDGGVDYSFECIGNVS+MRAALECCHKGWGTSVIVGVAASGQEI
Sbjct: 247 NPKEHDKPIQQVLVDLTDGGVDYSFECIGNVSIMRAALECCHKGWGTSVIVGVAASGQEI 306
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSR+QVPWLVDKYMKKEIKVDEY+THNM L +IN+AF
Sbjct: 307 STRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAFHL 366
Query: 241 MHGGDCLRCVLKMQ 254
+H G CLRCVL MQ
Sbjct: 367 LHEGGCLRCVLAMQ 380
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242063486|ref|XP_002453032.1| hypothetical protein SORBIDRAFT_04g037050 [Sorghum bicolor] gi|241932863|gb|EES06008.1| hypothetical protein SORBIDRAFT_04g037050 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/254 (91%), Positives = 242/254 (95%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTGLG
Sbjct: 127 MMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGLG 186
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KKFD AKNFGVTEFV
Sbjct: 187 AVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDNKKFDVAKNFGVTEFV 246
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI
Sbjct: 247 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 306
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGRVWKGTAFGGFKSR+QVPWLVDKYM KEIKVDEY+THNM L +IN+AF
Sbjct: 307 ATRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMNKEIKVDEYITHNMNLADINDAFHL 366
Query: 241 MHGGDCLRCVLKMQ 254
+H G CLRCVL MQ
Sbjct: 367 LHEGGCLRCVLAMQ 380
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|325910821|dbj|BAJ83825.1| glutathione-dependent formaldehyde dehydrogenase [Epipremnum aureum] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/254 (91%), Positives = 243/254 (95%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGV TGLG
Sbjct: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVATGLG 184
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GSIVA+FGLGTVGLAVAEGAK AGASR+IGIDID KKFD AKNFGVTEFV
Sbjct: 185 AVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDVAKNFGVTEFV 244
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKD++KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI
Sbjct: 245 NPKDYEKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 304
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEY+THN+TLGEIN+ F +
Sbjct: 305 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNLTLGEINKGFDF 364
Query: 241 MHGGDCLRCVLKMQ 254
MH G CLRCVL Q
Sbjct: 365 MHEGSCLRCVLDTQ 378
|
Source: Epipremnum aureum Species: Epipremnum aureum Genus: Scindapsus Family: Araceae Order: Alismatales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|194688556|gb|ACF78362.1| unknown [Zea mays] gi|194707152|gb|ACF87660.1| unknown [Zea mays] gi|194707766|gb|ACF87967.1| unknown [Zea mays] gi|413939458|gb|AFW74009.1| putative alcohol dehydrogenase superfamily protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/254 (91%), Positives = 243/254 (95%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTGLG
Sbjct: 127 MMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGLG 186
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GS+VAVFGLGTVGLAVAEGAKAAGASRVIGIDID KKFD AKNFGVTEFV
Sbjct: 187 AVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNFGVTEFV 246
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPK+HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI
Sbjct: 247 NPKEHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 306
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGRVWKGTAFGGFKSR+QVPWLVDKYMKKEIKVDEY+THNM L +IN+AF
Sbjct: 307 ATRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAFHL 366
Query: 241 MHGGDCLRCVLKMQ 254
+H G CLRCVL MQ
Sbjct: 367 LHEGGCLRCVLAMQ 380
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|429840534|gb|AGA15794.1| alcohol dehydrogenase 2 [Diospyros kaki] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/253 (91%), Positives = 241/253 (95%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMNDRKSRFSING PIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVPTGLG
Sbjct: 125 MMNDRKSRFSINGTPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLEKVCLLGCGVPTGLG 184
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVEPGSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD AKNFGVTEFV
Sbjct: 185 AVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDTAKNFGVTEFV 244
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAASGQEI
Sbjct: 245 NPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEI 304
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSRS VPWLVDKY+KKEIKVDEY+THN+ L +INEAF
Sbjct: 305 STRPFQLVTGRVWKGTAFGGFKSRSHVPWLVDKYLKKEIKVDEYITHNLALAQINEAFHL 364
Query: 241 MHGGDCLRCVLKM 253
MH G C RCVLKM
Sbjct: 365 MHEGGCFRCVLKM 377
|
Source: Diospyros kaki Species: Diospyros kaki Genus: Diospyros Family: Ebenaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195625730|gb|ACG34695.1| alcohol dehydrogenase class 3 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/254 (91%), Positives = 242/254 (95%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTGLG
Sbjct: 127 MMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGLG 186
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVE GS+VAVFGLGTVGLAVAEGAKAAGASRVI IDID KKFD AKNFGVTEFV
Sbjct: 187 AVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVISIDIDNKKFDVAKNFGVTEFV 246
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPK+HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI
Sbjct: 247 NPKEHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 306
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGRVWKGTAFGGFKSR+QVPWLVDKYMKKEIKVDEY+THNM L +IN+AF
Sbjct: 307 ATRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAFHL 366
Query: 241 MHGGDCLRCVLKMQ 254
+H G CLRCVL MQ
Sbjct: 367 LHEGGCLRCVLAMQ 380
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 255 | ||||||
| UNIPROTKB|P11766 | 374 | ADH5 "Alcohol dehydrogenase cl | 0.992 | 0.676 | 0.667 | 1.9e-90 | |
| ZFIN|ZDB-GENE-011003-1 | 376 | adh5 "alcohol dehydrogenase 5" | 0.988 | 0.670 | 0.662 | 3.1e-90 | |
| UNIPROTKB|F1S0C1 | 374 | ADH5 "Uncharacterized protein" | 0.992 | 0.676 | 0.667 | 5.1e-90 | |
| UNIPROTKB|F1PLM5 | 376 | F1PLM5 "Uncharacterized protei | 0.992 | 0.672 | 0.664 | 1.1e-89 | |
| UNIPROTKB|J9PA83 | 374 | ADH5 "Uncharacterized protein" | 0.992 | 0.676 | 0.664 | 1.1e-89 | |
| RGD|2292706 | 374 | Adh5 "alcohol dehydrogenase 5 | 0.992 | 0.676 | 0.667 | 1.2e-88 | |
| UNIPROTKB|P12711 | 374 | Adh5 "Alcohol dehydrogenase cl | 0.992 | 0.676 | 0.667 | 1.2e-88 | |
| UNIPROTKB|Q3ZC42 | 374 | ADH5 "Alcohol dehydrogenase cl | 0.992 | 0.676 | 0.656 | 2.5e-88 | |
| MGI|MGI:87929 | 374 | Adh5 "alcohol dehydrogenase 5 | 0.992 | 0.676 | 0.664 | 2.5e-88 | |
| UNIPROTKB|F1NI89 | 370 | ADH5 "Uncharacterized protein" | 0.988 | 0.681 | 0.666 | 8.6e-88 |
| UNIPROTKB|P11766 ADH5 "Alcohol dehydrogenase class-3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 169/253 (66%), Positives = 199/253 (78%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAK+EPGS+ AVFGLG V SR+IG+DI+ KF RAK FG TE +
Sbjct: 182 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI
Sbjct: 242 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEI 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VTHN++ EIN+AF
Sbjct: 302 ATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFEL 361
Query: 241 MHGGDCLRCVLKM 253
MH G +R V+K+
Sbjct: 362 MHSGKSIRTVVKI 374
|
|
| ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 167/252 (66%), Positives = 196/252 (77%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK ++HFMGTSTFS+YTVV ++S+AK+D APLDKVCLLGCG+ TG G
Sbjct: 124 LMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGISTGYG 183
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVE GS AVFGLG V +R+IGID++P KF+ AK FG TEFV
Sbjct: 184 AAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKKFGATEFV 243
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDH KPIQ+VLV+LTDGGVDYSFECIGNV +MRAALE CHKGWGTSVI+GVA +GQEI
Sbjct: 244 NPKDHSKPIQEVLVELTDGGVDYSFECIGNVGIMRAALEACHKGWGTSVIIGVAGAGQEI 303
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGR WKGTAFGG+KS VP LV+ YM K++ VDE+VTH + +INEAF
Sbjct: 304 STRPFQLVTGRTWKGTAFGGWKSVESVPKLVNDYMNKKLMVDEFVTHTLPFAQINEAFDL 363
Query: 241 MHGGDCLRCVLK 252
MH G +R VL+
Sbjct: 364 MHAGKSIRAVLQ 375
|
|
| UNIPROTKB|F1S0C1 ADH5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 169/253 (66%), Positives = 197/253 (77%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCGV TG G
Sbjct: 122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGVSTGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG V SR+IG+DI+ KF RAK FG +E +
Sbjct: 182 AAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGASECI 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI
Sbjct: 242 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEI 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGR WKGTAFGG+KS +P LV +YM K+IKVDE+VTHN+ +INEAF
Sbjct: 302 ATRPFQLVTGRTWKGTAFGGWKSVESIPKLVSEYMSKKIKVDEFVTHNLPFDQINEAFEL 361
Query: 241 MHGGDCLRCVLKM 253
MH G +R V+K+
Sbjct: 362 MHAGKSIRTVIKL 374
|
|
| UNIPROTKB|F1PLM5 F1PLM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 168/253 (66%), Positives = 199/253 (78%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 124 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 183
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG V SR+IG+DI+ KF RAK FG +E +
Sbjct: 184 AALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASECI 243
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SVIVGVAASG+EI
Sbjct: 244 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGEEI 303
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGRVWKGTAFGG+KS VP LV +YM ++IKVDE+VTH+++ +INEAF
Sbjct: 304 ATRPFQLVTGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEAFDL 363
Query: 241 MHGGDCLRCVLKM 253
+H G +R V+K+
Sbjct: 364 LHAGKSIRTVVKL 376
|
|
| UNIPROTKB|J9PA83 ADH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 168/253 (66%), Positives = 199/253 (78%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG V SR+IG+DI+ KF RAK FG +E +
Sbjct: 182 AALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASECI 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SVIVGVAASG+EI
Sbjct: 242 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGEEI 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGRVWKGTAFGG+KS VP LV +YM ++IKVDE+VTH+++ +INEAF
Sbjct: 302 ATRPFQLVTGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEAFDL 361
Query: 241 MHGGDCLRCVLKM 253
+H G +R V+K+
Sbjct: 362 LHAGKSIRTVVKL 374
|
|
| RGD|2292706 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 169/253 (66%), Positives = 197/253 (77%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 LMPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG V SR+IGIDI+ KF +AK FG TE +
Sbjct: 182 AAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATECI 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D K IQ+VL+++TDGGVD+SFECIGNV VMR+ALE HKGWG SV+VGVAASG+EI
Sbjct: 242 NPQDFSKSIQEVLIEMTDGGVDFSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEI 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VT N++ +IN+AF
Sbjct: 302 STRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINKAFDL 361
Query: 241 MHGGDCLRCVLKM 253
MH G+ +R VLKM
Sbjct: 362 MHSGNSIRTVLKM 374
|
|
| UNIPROTKB|P12711 Adh5 "Alcohol dehydrogenase class-3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 169/253 (66%), Positives = 197/253 (77%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 LMPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG V SR+IGIDI+ KF +AK FG TE +
Sbjct: 182 AAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATECI 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D K IQ+VL+++TDGGVD+SFECIGNV VMR+ALE HKGWG SV+VGVAASG+EI
Sbjct: 242 NPQDFSKSIQEVLIEMTDGGVDFSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEI 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VT N++ +IN+AF
Sbjct: 302 STRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINKAFDL 361
Query: 241 MHGGDCLRCVLKM 253
MH G+ +R VLKM
Sbjct: 362 MHSGNSIRTVLKM 374
|
|
| UNIPROTKB|Q3ZC42 ADH5 "Alcohol dehydrogenase class-3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 166/253 (65%), Positives = 196/253 (77%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A N AKVEPGS AVFGLG V +R+IG+DI+ KF RAK FG +E +
Sbjct: 182 AALNAAKVEPGSTCAVFGLGGVGLAVIMGCKMAGAARIIGVDINKDKFARAKEFGASECI 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI
Sbjct: 242 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGISVVVGVAASGEEI 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VTH++ +INEAF
Sbjct: 302 ATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHSLPFDQINEAFDL 361
Query: 241 MHGGDCLRCVLKM 253
MH G +R V+K+
Sbjct: 362 MHAGKSIRTVVKL 374
|
|
| MGI|MGI:87929 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 168/253 (66%), Positives = 197/253 (77%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK ++HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 LMPDGTSRFTCKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG V SR+IGIDI+ KF +AK FG +E +
Sbjct: 182 AAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGASECI 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
+P+D K IQ+VLV++TDGGVDYSFECIGNV VMR+ALE HKGWG SV+VGVAASG+EI
Sbjct: 242 SPQDFSKSIQEVLVEMTDGGVDYSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEI 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VT N++ +IN+AF
Sbjct: 302 STRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINQAFDL 361
Query: 241 MHGGDCLRCVLKM 253
MH GD +R VLKM
Sbjct: 362 MHSGDSIRTVLKM 374
|
|
| UNIPROTKB|F1NI89 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 168/252 (66%), Positives = 193/252 (76%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D RF+ GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG G
Sbjct: 118 LMPDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYG 177
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG V SR+IGIDI+ + +AK FG E +
Sbjct: 178 AAVNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTYAKAKEFGAAECI 237
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
+P+D +KPIQ+VLV++TDGGVDYSFECIGNV VMRAALE CHKGWG SVIVGVAA+GQEI
Sbjct: 238 SPQDFEKPIQEVLVEMTDGGVDYSFECIGNVGVMRAALEACHKGWGVSVIVGVAAAGQEI 297
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGR WKGTAFGG+KS VP LV+ YM K+IKVDE+VTH + +INEAF
Sbjct: 298 STRPFQLVTGRTWKGTAFGGWKSVDSVPKLVNDYMAKKIKVDEFVTHTLPFDKINEAFDL 357
Query: 241 MHGGDCLRCVLK 252
+H G +R VLK
Sbjct: 358 LHKGKSIRTVLK 369
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q96533 | ADHX_ARATH | 1, ., 1, ., 1, ., 2, 8, 4 | 0.9003 | 0.9843 | 0.6622 | yes | no |
| P44557 | FRMA_HAEIN | 1, ., 1, ., 1, ., - | 0.6055 | 0.9843 | 0.6640 | yes | no |
| A7ZIA4 | FRMA_ECO24 | 1, ., 1, ., 1, ., - | 0.6309 | 0.9882 | 0.6829 | yes | no |
| P19854 | ADHX_HORSE | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6916 | 0.9921 | 0.6764 | yes | no |
| Q1RFI7 | FRMA_ECOUT | 1, ., 1, ., 1, ., - | 0.6269 | 0.9882 | 0.6829 | yes | no |
| A2XAZ3 | ADHX_ORYSI | 1, ., 1, ., 1, ., 2, 8, 4 | 0.9083 | 0.9843 | 0.6587 | N/A | no |
| B1J085 | FRMA_ECOLC | 1, ., 1, ., 1, ., - | 0.6309 | 0.9882 | 0.6829 | yes | no |
| P12711 | ADHX_RAT | 1, ., 1, ., 1, ., 2, 8, 4 | 0.7035 | 0.9921 | 0.6764 | yes | no |
| Q0TKS7 | FRMA_ECOL5 | 1, ., 1, ., 1, ., - | 0.6269 | 0.9882 | 0.6829 | yes | no |
| P93629 | ADHX_MAIZE | 1, ., 1, ., 1, ., 2, 8, 4 | 0.9094 | 0.9960 | 0.6666 | N/A | no |
| A7ZX04 | FRMA_ECOHS | 1, ., 1, ., 1, ., - | 0.6309 | 0.9882 | 0.6829 | yes | no |
| Q0DWH1 | ADHX_ORYSJ | 1, ., 1, ., 1, ., 2, 8, 4 | 0.9083 | 0.9843 | 0.6587 | yes | no |
| Q8FKG1 | FRMA_ECOL6 | 1, ., 1, ., 1, ., - | 0.6269 | 0.9882 | 0.6829 | yes | no |
| P80572 | ADHX_PEA | 1, ., 1, ., 1, ., 2, 8, 4 | 0.8745 | 1.0 | 0.6746 | N/A | no |
| O19053 | ADHX_RABIT | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6916 | 0.9921 | 0.6764 | yes | no |
| Q17335 | ADHX_CAEEL | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6007 | 0.9960 | 0.6614 | yes | no |
| Q3ZC42 | ADHX_BOVIN | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6916 | 0.9921 | 0.6764 | yes | no |
| P46415 | ADHX_DROME | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6299 | 0.9882 | 0.6649 | yes | no |
| P11766 | ADHX_HUMAN | 1, ., 1, ., 1, ., 2, 8, 4 | 0.7035 | 0.9921 | 0.6764 | yes | no |
| P32771 | FADH_YEAST | 1, ., 1, ., 1, ., - | 0.5868 | 1.0 | 0.6606 | yes | no |
| O74540 | FADH2_SCHPO | 1, ., 1, ., 1, ., - | 0.5928 | 0.9921 | 0.6657 | yes | no |
| B1LIP1 | FRMA_ECOSM | 1, ., 1, ., 1, ., - | 0.6269 | 0.9882 | 0.6829 | yes | no |
| P28474 | ADHX_MOUSE | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6996 | 0.9921 | 0.6764 | yes | no |
| Q54TC2 | ADHX_DICDI | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6666 | 0.9882 | 0.6649 | yes | no |
| Q3Z550 | FRMA_SHISS | 1, ., 1, ., 1, ., - | 0.6309 | 0.9882 | 0.6829 | yes | no |
| A1A835 | FRMA_ECOK1 | 1, ., 1, ., 1, ., - | 0.6269 | 0.9882 | 0.6829 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.976 |
| 4th Layer | 1.1.1.284 | 0.991 |
| 4th Layer | 1.1.1.1 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 255 | |||
| cd08300 | 368 | cd08300, alcohol_DH_class_III, class III alcohol d | 0.0 | |
| cd08301 | 369 | cd08301, alcohol_DH_plants, Plant alcohol dehydrog | 1e-159 | |
| TIGR02818 | 368 | TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat | 1e-147 | |
| cd08277 | 365 | cd08277, liver_alcohol_DH_like, Liver alcohol dehy | 1e-139 | |
| cd08299 | 373 | cd08299, alcohol_DH_class_I_II_IV, class I, II, IV | 1e-133 | |
| COG1062 | 366 | COG1062, AdhC, Zn-dependent alcohol dehydrogenases | 1e-131 | |
| cd05279 | 365 | cd05279, Zn_ADH1, Liver alcohol dehydrogenase and | 1e-118 | |
| PLN02740 | 381 | PLN02740, PLN02740, Alcohol dehydrogenase-like | 1e-113 | |
| PLN02827 | 378 | PLN02827, PLN02827, Alcohol dehydrogenase-like | 1e-111 | |
| cd08279 | 363 | cd08279, Zn_ADH_class_III, Class III alcohol dehyd | 7e-88 | |
| cd08281 | 371 | cd08281, liver_ADH_like1, Zinc-dependent alcohol d | 5e-64 | |
| cd08278 | 365 | cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro | 6e-58 | |
| TIGR03989 | 369 | TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa | 1e-55 | |
| TIGR03451 | 358 | TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi | 4e-41 | |
| cd08263 | 367 | cd08263, Zn_ADH10, Alcohol dehydrogenases of the M | 1e-37 | |
| cd05188 | 271 | cd05188, MDR, Medium chain reductase/dehydrogenase | 1e-36 | |
| COG1063 | 350 | COG1063, Tdh, Threonine dehydrogenase and related | 4e-32 | |
| cd05278 | 347 | cd05278, FDH_like, Formaldehyde dehydrogenases | 2e-31 | |
| cd08260 | 345 | cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD | 5e-29 | |
| cd08231 | 361 | cd08231, MDR_TM0436_like, Hypothetical enzyme TM04 | 5e-29 | |
| pfam00107 | 131 | pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase | 3e-26 | |
| cd08236 | 343 | cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog | 4e-26 | |
| cd08233 | 351 | cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio | 6e-25 | |
| cd05285 | 343 | cd05285, sorbitol_DH, Sorbitol dehydrogenase | 2e-24 | |
| COG1064 | 339 | COG1064, AdhP, Zn-dependent alcohol dehydrogenases | 3e-24 | |
| cd08283 | 386 | cd08283, FDH_like_1, Glutathione-dependent formald | 5e-24 | |
| cd08235 | 343 | cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas | 2e-23 | |
| cd08254 | 338 | cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e | 3e-23 | |
| cd08239 | 339 | cd08239, THR_DH_like, L-threonine dehydrogenase (T | 4e-23 | |
| cd08234 | 334 | cd08234, threonine_DH_like, L-threonine dehydrogen | 2e-22 | |
| cd08285 | 351 | cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd | 2e-22 | |
| cd08284 | 344 | cd08284, FDH_like_2, Glutathione-dependent formald | 2e-21 | |
| cd08261 | 337 | cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD | 8e-21 | |
| cd08255 | 277 | cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro | 1e-20 | |
| cd08269 | 312 | cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD | 1e-19 | |
| cd05281 | 341 | cd05281, TDH, Threonine dehydrogenase | 7e-17 | |
| cd08287 | 345 | cd08287, FDH_like_ADH3, formaldehyde dehydrogenase | 1e-16 | |
| cd08286 | 345 | cd08286, FDH_like_ADH2, formaldehyde dehydrogenase | 1e-15 | |
| cd08282 | 375 | cd08282, PFDH_like, Pseudomonas putida aldehyde-di | 5e-15 | |
| cd08232 | 339 | cd08232, idonate-5-DH, L-idonate 5-dehydrogenase | 3e-14 | |
| cd08240 | 350 | cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa | 6e-14 | |
| TIGR03366 | 280 | TIGR03366, HpnZ_proposed, putative phosphonate cat | 7e-13 | |
| cd05284 | 340 | cd05284, arabinose_DH_like, D-arabinose dehydrogen | 1e-12 | |
| cd08297 | 341 | cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA | 1e-12 | |
| cd08262 | 341 | cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD | 1e-12 | |
| cd08266 | 342 | cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t | 1e-11 | |
| COG0604 | 326 | COG0604, Qor, NADPH:quinone reductase and related | 4e-11 | |
| TIGR00692 | 340 | TIGR00692, tdh, L-threonine 3-dehydrogenase | 4e-11 | |
| PLN02702 | 364 | PLN02702, PLN02702, L-idonate 5-dehydrogenase | 1e-10 | |
| cd08265 | 384 | cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD | 1e-10 | |
| PRK10309 | 347 | PRK10309, PRK10309, galactitol-1-phosphate dehydro | 3e-10 | |
| cd08258 | 306 | cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD | 3e-10 | |
| TIGR02819 | 393 | TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas | 4e-10 | |
| cd08276 | 336 | cd08276, MDR7, Medium chain dehydrogenases/reducta | 7e-10 | |
| cd08245 | 330 | cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD | 8e-10 | |
| cd08259 | 332 | cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD | 7e-09 | |
| cd08256 | 350 | cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD | 1e-08 | |
| PRK05396 | 341 | PRK05396, tdh, L-threonine 3-dehydrogenase; Valida | 2e-08 | |
| cd08249 | 339 | cd08249, enoyl_reductase_like, enoyl_reductase_lik | 3e-08 | |
| TIGR03201 | 349 | TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1 | 4e-08 | |
| cd05283 | 337 | cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA | 5e-08 | |
| cd08241 | 323 | cd08241, QOR1, Quinone oxidoreductase (QOR) | 3e-07 | |
| COG2130 | 340 | COG2130, COG2130, Putative NADP-dependent oxidored | 4e-07 | |
| cd08243 | 320 | cd08243, quinone_oxidoreductase_like_1, Quinone ox | 6e-07 | |
| cd08253 | 325 | cd08253, zeta_crystallin, Zeta-crystallin with NAD | 4e-06 | |
| cd05289 | 309 | cd05289, MDR_like_2, alcohol dehydrogenase and qui | 8e-06 | |
| PRK09880 | 343 | PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro | 1e-05 | |
| cd08296 | 333 | cd08296, CAD_like, Cinnamyl alcohol dehydrogenases | 1e-05 | |
| cd08271 | 325 | cd08271, MDR5, Medium chain dehydrogenases/reducta | 9e-05 | |
| PRK09422 | 338 | PRK09422, PRK09422, ethanol-active dehydrogenase/a | 2e-04 | |
| cd01075 | 200 | cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding d | 2e-04 | |
| pfam02254 | 116 | pfam02254, TrkA_N, TrkA-N domain | 3e-04 | |
| cd08247 | 352 | cd08247, AST1_like, AST1 is a cytoplasmic protein | 3e-04 | |
| TIGR03026 | 409 | TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog | 4e-04 | |
| COG0677 | 436 | COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate de | 0.001 | |
| pfam03721 | 188 | pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose | 0.003 | |
| cd08273 | 331 | cd08273, MDR8, Medium chain dehydrogenases/reducta | 0.003 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 0.004 |
| >gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 536 bits (1383), Expect = 0.0
Identities = 198/252 (78%), Positives = 221/252 (87%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRFS GKPIYHFMGTSTFS+YTVV ++SVAKI+P+APLDKVCLLGCGV TG G
Sbjct: 117 LMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYG 176
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AV NTAKVEPGS VAVFGLG VGLAV +GAKAAGASR+IGIDI+P KF+ AK FG T+ V
Sbjct: 177 AVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCV 236
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDHDKPIQQVLV++TDGGVDY+FECIGNV VMRAALE CHKGWGTSVI+GVAA+GQEI
Sbjct: 237 NPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEI 296
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGG+KSRSQVP LV+ YMK +IKVDE++TH M L EINEAF
Sbjct: 297 STRPFQLVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDL 356
Query: 241 MHGGDCLRCVLK 252
MH G +R V+K
Sbjct: 357 MHAGKSIRTVVK 368
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368 |
| >gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 445 bits (1147), Expect = e-159
Identities = 159/251 (63%), Positives = 201/251 (80%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
M+ND KSRFSINGKPIYHF+GTSTFS+YTVVH VAKI+P+APLDKVCLL CGV TGLG
Sbjct: 118 MINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLG 177
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A WN AKV+ GS VA+FGLG VGLAVAEGA+ GASR+IG+D++P KF++AK FGVTEFV
Sbjct: 178 AAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFV 237
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDHDKP+Q+V+ ++T GGVDYSFEC GN+ M +A EC H GWG +V++GV
Sbjct: 238 NPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVF 297
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
ST P L+ GR KGT FGG+K ++ +P LV+KYMKKE+++++++TH + EIN+AF
Sbjct: 298 STHPMNLLNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDL 357
Query: 241 MHGGDCLRCVL 251
+ G+CLRC+L
Sbjct: 358 LLKGECLRCIL 368
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369 |
| >gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 414 bits (1067), Expect = e-147
Identities = 168/253 (66%), Positives = 211/253 (83%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRFS +G+PIYH+MG STFS+YTVV ++S+AKI+P APL++VCLLGCGV TG+G
Sbjct: 116 LMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIG 175
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AV NTAKVE G VAVFGLG +GL+V +GA+ A ASR+I IDI+P KF+ AK G T+ V
Sbjct: 176 AVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCV 235
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP D+DKPIQ+V+V++TDGGVDYSFECIGNV+VMRAALECCHKGWG S+I+GVA +GQEI
Sbjct: 236 NPNDYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEI 295
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVW+G+AFGG K R+++P +V++YMK EI +D++VTH M L +INEAF
Sbjct: 296 STRPFQLVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDL 355
Query: 241 MHGGDCLRCVLKM 253
MH G +R V+
Sbjct: 356 MHEGKSIRTVIHY 368
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368 |
| >gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 395 bits (1017), Expect = e-139
Identities = 156/252 (61%), Positives = 187/252 (74%), Gaps = 1/252 (0%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK IYHF+GTSTFSQYTVV + VAKIDP APL+ VCLLGCG TG G
Sbjct: 115 LMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYG 174
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A WNTAKVEPGS VAVFGLG VGL+ GAK AGASR+IG+DI+ KF++AK FG T+F+
Sbjct: 175 AAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFI 234
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKD DKP+ +V+ ++T GGVDYSFEC GN +M ALE GWG SV+VGV G E+
Sbjct: 235 NPKDSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPP-GAEL 293
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
S RPFQL+ GR WKG+ FGGFKSRS VP LV KYM K+ +DE +TH + EIN+ F
Sbjct: 294 SIRPFQLILGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDL 353
Query: 241 MHGGDCLRCVLK 252
M G+C+R V+
Sbjct: 354 MKSGECIRTVIT 365
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365 |
| >gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 379 bits (976), Expect = e-133
Identities = 143/251 (56%), Positives = 180/251 (71%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GKPI+HF+GTSTFS+YTVV +++VAKID APL+KVCL+GCG TG G
Sbjct: 121 LMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYG 180
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKV PGS AVFGLG VGL+ G KAAGASR+I +DI+ KF +AK G TE +
Sbjct: 181 AAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECI 240
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D+ KPIQ+VL ++TDGGVD+SFE IG + M+AAL CH+G+G SVIVGV S Q +
Sbjct: 241 NPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNL 300
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
S P L+TGR WKG FGG+KS+ VP LV YM K+ +D +TH + +INE F
Sbjct: 301 SINPMLLLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDL 360
Query: 241 MHGGDCLRCVL 251
+ G +R VL
Sbjct: 361 LRSGKSIRTVL 371
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373 |
| >gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 376 bits (967), Expect = e-131
Identities = 157/252 (62%), Positives = 195/252 (77%), Gaps = 2/252 (0%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D +R S NG P+YH++G STF++YTVVH++S+ KIDP APL+K CLLGCGV TG+GA
Sbjct: 117 MPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGA 176
Query: 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 121
V NTAKVEPG VAVFGLG VGLA +GAKAAGA R+I +DI+P+K + AK FG T FVN
Sbjct: 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVN 236
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
PK+ D + + +V+LTDGG DY+FEC+GNV VMR ALE H+ GTSVI+GVA +GQEIS
Sbjct: 237 PKEVD-DVVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQEIS 294
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
TRPFQLVTGRVWKG+AFGG + RS +P LVD YM ++ +D VTH + L +INEAF M
Sbjct: 295 TRPFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLM 354
Query: 242 HGGDCLRCVLKM 253
H G +R V++
Sbjct: 355 HEGKSIRSVIRF 366
|
Length = 366 |
| >gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 342 bits (880), Expect = e-118
Identities = 140/251 (55%), Positives = 181/251 (72%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M+D SRF+ GKPI+HF+GTSTF++YTVV ++S+AKIDP APL+KVCL+GCG TG GA
Sbjct: 115 MSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGA 174
Query: 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 121
NTAKV PGS AVFGLG VGL+V G KAAGASR+I +DI+ KF++AK G TE +N
Sbjct: 175 AVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECIN 234
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D DKPI +VL ++TDGGVDY+FE IG+ ++ AL+ G GTSV+VGV SG E +
Sbjct: 235 PRDQDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEAT 294
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L+TGR KGT FGG+KS+ VP LV Y +K+ +DE +TH + EIN+ F M
Sbjct: 295 LDPNDLLTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLM 354
Query: 242 HGGDCLRCVLK 252
G+ +R +L
Sbjct: 355 RSGESIRTILT 365
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365 |
| >gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Score = 329 bits (846), Expect = e-113
Identities = 131/255 (51%), Positives = 183/255 (71%), Gaps = 2/255 (0%)
Query: 1 MMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 58
M+ND K+RFS +G+PIYHF+ TSTF++YTV+ V KIDP APL K+ LL CGV TG
Sbjct: 127 MVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTG 186
Query: 59 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 118
+GA WNTA V+ GS VA+FGLG VGLAVAEGA+A GAS++IG+DI+P+KF++ K G+T+
Sbjct: 187 VGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITD 246
Query: 119 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 178
F+NPKD DKP+ + + ++T GGVDYSFEC GNV V+R A H GWG +V++G+ + +
Sbjct: 247 FINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPK 306
Query: 179 EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 238
+ P +L GR G+ FG FK +SQ+P L + M+ + +D ++TH + +INEAF
Sbjct: 307 MLPLHPMELFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAF 366
Query: 239 RYMHGGDCLRCVLKM 253
+ + G LRC+L +
Sbjct: 367 QLLEDGKALRCLLHL 381
|
Length = 381 |
| >gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Score = 324 bits (832), Expect = e-111
Identities = 139/253 (54%), Positives = 184/253 (72%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
M +D+K+RFSI GKP+YH+ S+FS+YTVVH K+DP APL K+CLL CGV GLG
Sbjct: 124 MHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLG 183
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A WN A V GS V +FGLGTVGL+VA+GAK GAS++IG+DI+P+K ++AK FGVT+F+
Sbjct: 184 AAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFI 243
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP D +PIQQV+ +T GG DYSFEC+G+ + AL+ C GWG +V +GV + E+
Sbjct: 244 NPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEV 303
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
S ++GR KG+ FGG+K +S +P LVDKYM KEI +DE++THN++ EIN+AF
Sbjct: 304 SAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFEL 363
Query: 241 MHGGDCLRCVLKM 253
M G CLRCV+ M
Sbjct: 364 MREGKCLRCVIHM 376
|
Length = 378 |
| >gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 7e-88
Identities = 111/253 (43%), Positives = 154/253 (60%), Gaps = 5/253 (1%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+ D RF+ +G+P+ G TF++YTVV + SV KID PLD+ LLGCGV TG+G
Sbjct: 113 QLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVG 172
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
AV NTA+V PG VAV G G VGL +GA+ AGASR+I +D P+K + A+ FG T V
Sbjct: 173 AVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTV 232
Query: 121 NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 179
N + D ++ V DLTDG G DY+FE +G + +R AL KG GT+V+VG+ G+
Sbjct: 233 NASEDD-AVEAV-RDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGET 289
Query: 180 ISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 238
+S +L + + +G+ +G R +P L+D Y +K+DE VT +L EINEAF
Sbjct: 290 VSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAF 349
Query: 239 RYMHGGDCLRCVL 251
M G+ R V+
Sbjct: 350 ADMLAGENARGVI 362
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363 |
| >gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 5e-64
Identities = 100/246 (40%), Positives = 136/246 (55%), Gaps = 4/246 (1%)
Query: 8 RFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 67
R + G I H +G S F++Y VV SV KID PL+ L GC V TG+GAV NTA
Sbjct: 129 RLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAG 188
Query: 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 127
V PG VAV GLG VGL+ GA AAGAS+V+ +D++ K A+ G T VN D +
Sbjct: 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPN- 247
Query: 128 PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL 187
++QV +LT GGVDY+FE G+V + A E +G GT+V G+ +S L
Sbjct: 248 AVEQV-RELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSVPALSL 305
Query: 188 VT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC 246
V R KG+ G R +P + Y+ + VD+ +TH + L EINE F + G+
Sbjct: 306 VAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEA 365
Query: 247 LRCVLK 252
+R V+
Sbjct: 366 VRQVIL 371
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371 |
| >gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 6e-58
Identities = 85/243 (34%), Positives = 132/243 (54%), Gaps = 6/243 (2%)
Query: 12 NGKPIY-HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP 70
+G P++ HF G S+F+ Y VVH+ +V K+D PL+ + LGCG+ TG GAV N K P
Sbjct: 127 DGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRP 186
Query: 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 130
GS +AVFG G VGLA AK AG + +I +DI + + AK G T +NPK+ D +
Sbjct: 187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEED--LV 244
Query: 131 QVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT- 189
+ ++T GGVDY+ + G +V+ A++ GT +VG G E++ L+
Sbjct: 245 AAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVTLDVNDLLVS 303
Query: 190 GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRC 249
G+ +G G + +P L++ Y + + D+ VT +IN+A G ++
Sbjct: 304 GKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTF-YPFEDINQAIADSESGKVIKP 362
Query: 250 VLK 252
VL+
Sbjct: 363 VLR 365
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365 |
| >gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 1e-55
Identities = 94/257 (36%), Positives = 137/257 (53%), Gaps = 9/257 (3%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
++D RF +G+ + TFS+YTVV + SV KID PLDK CL+GCGVPTG G
Sbjct: 116 QISDGTYRFHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWG 175
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
+ N A V PG V V G+G VG+ +GA AGA +VI +D K ++A FG T
Sbjct: 176 SAVNIADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAF 235
Query: 121 NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV--SVMRAALECCHKGWGTSVIVGVAASG 177
++ +Q V +LT+G G D + +G V + AL KG G V+ G+
Sbjct: 236 A--SMEEAVQLVR-ELTNGQGADKTIITVGEVDGEHIAEALSATRKG-GRVVVTGLGPMA 291
Query: 178 QE-ISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEIN 235
+ F+L + +GT FGG R+ +P L++ Y ++K+DE +T TL +IN
Sbjct: 292 DVDVKVNLFELTLLQKELQGTLFGGANPRADIPRLLELYRAGKLKLDELITRTYTLDQIN 351
Query: 236 EAFRYMHGGDCLRCVLK 252
E ++ M G +R V+
Sbjct: 352 EGYQDMLDGKNIRGVIV 368
|
This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369 |
| >gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 4e-41
Identities = 89/243 (36%), Positives = 122/243 (50%), Gaps = 7/243 (2%)
Query: 12 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG 71
+G + +G F++ T+VH K+DP A LLGCGV GLGA NT V+ G
Sbjct: 118 DGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRG 177
Query: 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 131
VAV G G VG A GA AGAS++I +DID +K + A+ FG T VN D P++
Sbjct: 178 DSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTD-PVEA 236
Query: 132 VLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTG 190
+ LT G G D + +G + A GT V+VGV + P V G
Sbjct: 237 IR-ALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMTLEL-PLLDVFG 293
Query: 191 R--VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLR 248
R K + +G P LVD Y++ + +D +VT + L ++ EAF MH GD LR
Sbjct: 294 RGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLR 353
Query: 249 CVL 251
V+
Sbjct: 354 SVV 356
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358 |
| >gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-37
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 10/236 (4%)
Query: 13 GKPIYHF-MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG 71
G P+Y + MG ++Y VV ++A + + +LGC T GA+ + A V PG
Sbjct: 131 GGPVYMYSMGG--LAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPG 188
Query: 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 131
VAV G+G VG + + AKA GAS +I +D+ +K +AK G T VN D +
Sbjct: 189 ETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKED-AVAA 247
Query: 132 VLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 191
+ GVD E +G + AL+ G G +V+VG+A G +LV
Sbjct: 248 IREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATAEIPITRLVRRG 306
Query: 192 VWKGTAFG--GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 245
+ G G + R +P LV ++ + VTH L EINEA+ + G
Sbjct: 307 I---KIIGSYGARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGL 359
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367 |
| >gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-36
Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 4/189 (2%)
Query: 12 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG 71
G I F++Y VV ++ + L++ LL + T A+ ++PG
Sbjct: 76 PGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPG 135
Query: 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 131
V V G G VGL A+ AKAAGA RVI D +K + AK G ++ K+ D +
Sbjct: 136 DTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKEEDLE--E 192
Query: 132 VLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 191
L GG D + +G + AL G G V+VG + G + L
Sbjct: 193 ELRLTGGGGADVVIDAVGGPETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKEL 251
Query: 192 VWKGTAFGG 200
G+ G
Sbjct: 252 TIIGSTGGT 260
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271 |
| >gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-32
Identities = 66/255 (25%), Positives = 94/255 (36%), Gaps = 13/255 (5%)
Query: 4 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 63
F G F++Y V P ++ L + T
Sbjct: 104 CENPGFYGYAGLGGGIDGG--FAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHA 161
Query: 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 123
A V PG V V G G +GL AK GAS VI +D P++ + AK G + V
Sbjct: 162 ERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNP 221
Query: 124 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR 183
D ++L G D E +G+ + ALE G GT V+VGV G E
Sbjct: 222 SEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGV--YGGEDIPL 278
Query: 184 PFQLVTGRVWKGTAFGG---FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
P LV V K G R +D +I ++ +TH + L + EA+
Sbjct: 279 PAGLV---VSKELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYEL 335
Query: 241 M--HGGDCLRCVLKM 253
+ ++ VLK
Sbjct: 336 FADRKEEAIKVVLKP 350
|
Length = 350 |
| >gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-31
Identities = 77/252 (30%), Positives = 119/252 (47%), Gaps = 20/252 (7%)
Query: 12 NGKPIYHFMGTSTFSQYTVVH----DVSVAKIDPQAPLDKVCLLGCGVPTGL-GAVWNTA 66
NG + Q V D+++AKI P + +L +PTG GA A
Sbjct: 106 NGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGAE--LA 163
Query: 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 126
++PGS VAV G G VGL GA+ GA+R+I +D +P++ D AK G T+ +NPK+
Sbjct: 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKN-G 222
Query: 127 KPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF 185
++Q+L +LT G GVD E +G A++ G GT VGV +
Sbjct: 223 DIVEQIL-ELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLP--LL 278
Query: 186 QLVTGRVWKGTAF--GGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG 243
G K F G R+++P L+D + +I + +TH L +I +A+R
Sbjct: 279 GEWFG---KNLTFKTGLVPVRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDN 335
Query: 244 G--DCLRCVLKM 253
C++ V++
Sbjct: 336 KPDGCIKVVIRP 347
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347 |
| >gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 5e-29
Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 5/175 (2%)
Query: 19 FMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 76
F +F++Y V DV++ ++ LGC T A+ + A+V+PG VAV
Sbjct: 112 FTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAV 171
Query: 77 FGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDL 136
G G VGL+ A A GA RVI +DID K + A+ G VN + + V DL
Sbjct: 172 HGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASEVEDVAAAV-RDL 229
Query: 137 TDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 191
T GG S + +G R ++ K G V VG+ + P V R
Sbjct: 230 TGGGAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVAR 283
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345 |
| >gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 5e-29
Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 12/241 (4%)
Query: 18 HFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 76
H G ++++ + ++ ++ P + C + T L A+ V G V V
Sbjct: 126 HLSGG--YAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVV 183
Query: 77 FGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV-D 135
G G +GL AK AGA RVI ID P++ + A+ FG ++ + P ++ +V D
Sbjct: 184 QGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRD 243
Query: 136 LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVW- 193
+T G G D E G+ + + LE +G GT V+VG A + P ++V R
Sbjct: 244 ITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIV--RKNL 300
Query: 194 --KGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 251
G + +++ + E VTH L +INEA G L+ V+
Sbjct: 301 TIIGVHNYDPSHLYRAVRFLERT-QDRFPFAELVTHRYPLEDINEALELAESGTALKVVI 359
Query: 252 K 252
Sbjct: 360 D 360
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361 |
| >gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 3e-26
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G 140
VGLA + AKA GA+RVI +D +K + AK G +N +D D + + +LT G G
Sbjct: 2 VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDED--FVERVRELTGGRG 59
Query: 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGG 200
VD +C+G + + ALE G G V+VG+ L+ G+ GG
Sbjct: 60 VDVVIDCVGAPATLEQALELLRPG-GRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGGG 118
Query: 201 -FKSRSQVPWLVD 212
+ + L
Sbjct: 119 REEFEEALELLAS 131
|
Length = 131 |
| >gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-26
Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 15/228 (6%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP--TGLGAVWNTAKVEPGSIVAVFGLGTV 82
F++Y V ++ KI ++ ++ P L AV A + G V V G GT+
Sbjct: 116 FAEYVSVPARNLIKIPDHVDYEEAAMIE---PAAVALHAVRL-AGITLGDTVVVIGAGTI 171
Query: 83 GLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GV 141
GL + K GA RVI +DID +K A+ G + +NPK+ D + + +LT+G G
Sbjct: 172 GLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEED---VEKVRELTEGRGA 228
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR--VWKGTAFG 199
D E G+ + + AL G G V+VG+ +S F+ + + +G+
Sbjct: 229 DLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNS 287
Query: 200 GFKSRSQVPW--LVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 245
W +D +IKV+ +TH + L + AF + +
Sbjct: 288 YSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADRE 335
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343 |
| >gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 6e-25
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 13/177 (7%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT--GLGAVWNTAKVEPGSIVAVFGLGTV 82
F++Y VV V K+ PL++ L+ P AV + +PG V G G +
Sbjct: 129 FAEYVVVPAYHVHKLPDNVPLEEAALVE---PLAVAWHAV-RRSGFKPGDTALVLGAGPI 184
Query: 83 GLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GV 141
GL KAAGAS++I + + + A+ G T ++P + D + + LT G GV
Sbjct: 185 GLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVD--VVAEVRKLTGGGGV 242
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTA 197
D SF+C G + + A++ GT+V V + + IS P LV + G+
Sbjct: 243 DVSFDCAGVQATLDTAIDALRPR-GTAVNVAIW--EKPISFNPNDLVLKEKTLTGSI 296
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351 |
| >gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 2e-24
Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 125
A V PG V VFG G +GL A AKA GA++V+ DIDP + + AK G T VN +
Sbjct: 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTE 217
Query: 126 DKP-IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR 183
D P + + +L G G D EC G S ++ A+ G GT V+VG+ G+ T
Sbjct: 218 DTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGM---GKPEVTL 273
Query: 184 PFQLVTGR--VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P + R +G F+ + P ++ ++ V +TH L + EAF
Sbjct: 274 PLSAASLREIDIRGV----FRYANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETA 329
Query: 242 HGGD 245
G
Sbjct: 330 AKGK 333
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343 |
| >gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 3e-24
Identities = 65/232 (28%), Positives = 97/232 (41%), Gaps = 17/232 (7%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVG 83
+++Y VV V KI L + L C T A+ A V+PG VAV G G +G
Sbjct: 121 GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLG 179
Query: 84 LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDY 143
+ AKA GA VI I +K + AK G +N D ++ V D
Sbjct: 180 HMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSSD-SDALEAV-----KEIADA 232
Query: 144 SFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFK 202
+ +G ++ +L+ +G GT V+VG+ G F L+ G+ G
Sbjct: 233 IIDTVGPATL-EPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT-- 288
Query: 203 SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253
R+ + +D E K+ + + L EINEA+ M G R V+ M
Sbjct: 289 -RADLEEALD--FAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDM 337
|
Length = 339 |
| >gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 5e-24
Identities = 71/254 (27%), Positives = 104/254 (40%), Gaps = 48/254 (18%)
Query: 33 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA 92
DV KI +K L +PTG A A+V+PG VAV+G G VGL A AK
Sbjct: 148 DVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKL 206
Query: 93 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIG-- 149
GA RVI ID P++ + A++ E +N ++ D + + L +LT G G D + +G
Sbjct: 207 LGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVV-EALRELTGGRGPDVCIDAVGME 265
Query: 150 -------------------NVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTG 190
+R A++ KG GT I+GV F +
Sbjct: 266 AHGSPLHKAEQALLKLETDRPDALREAIQAVRKG-GTVSIIGVYGGT----VNKFPI--- 317
Query: 191 RVWKGTAF--------GGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEA---FR 239
G A G + +P L++ E+ +TH + L + EA F
Sbjct: 318 ----GAAMNKGLTLRMGQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFD 373
Query: 240 YMHGGDCLRCVLKM 253
G C++ VLK
Sbjct: 374 KKEDG-CIKVVLKP 386
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386 |
| >gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 2e-23
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 12/194 (6%)
Query: 63 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 122
A ++PG V V G G +GL A AKA+GA +VI D++ + + AK G ++
Sbjct: 158 QRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDA 217
Query: 123 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
+ D +++V +LTDG G D G+ ALE KG G + G G ++
Sbjct: 218 AEED-LVEKVR-ELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVN 274
Query: 182 TRPFQLVTGRVWKG--TAFGGFK-SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 238
+ + T G + S ++ +I V + +TH L +I EAF
Sbjct: 275 -----IDPNLIHYREITITGSYAASPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAF 329
Query: 239 RYMHGGDCLRCVLK 252
G L+ V+
Sbjct: 330 ELAADGKSLKIVIT 343
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343 |
| >gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 3e-23
Identities = 62/220 (28%), Positives = 94/220 (42%), Gaps = 11/220 (5%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGL 84
F++Y VV ++ + P + + V T AV +V+PG V V GLG +GL
Sbjct: 120 FAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGL 179
Query: 85 AVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 144
+ AKA GA VI +DI +K + AK G E +N D D P + L GG D
Sbjct: 180 NAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGL-GGGFDVI 236
Query: 145 FECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSR 204
F+ +G A + G G V+VG+ + L+ + +FGG +
Sbjct: 237 FDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDKLTVDL--SDLIARELRIIGSFGG--TP 291
Query: 205 SQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG 244
+P ++D K ++ L EI E +H G
Sbjct: 292 EDLPEVLDLIAKGKLDP---QVETRPLDEIPEVLERLHKG 328
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338 |
| >gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 4e-23
Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 20/246 (8%)
Query: 12 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG 71
+ + Y + ++Y +V + ++ + LL CG+ T A+ V
Sbjct: 106 SKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGR 164
Query: 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 131
V V G G VGL A+A GA VIG+D P++ + AK G +N D Q
Sbjct: 165 DTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDD---VQ 221
Query: 132 VLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS-----GQEISTRPF 185
+ +LT G G D + EC GN + R ALE WG V+VG ++ +
Sbjct: 222 EIRELTSGAGADVAIECSGNTAARRLALEAVRP-WGRLVLVGEGGELTIEVSNDLIRKQR 280
Query: 186 QLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 245
L+ + + + + +++VD VTH L + EA+ G+
Sbjct: 281 TLIGSWY---FSVPDMEE------CAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE 331
Query: 246 CLRCVL 251
+ V
Sbjct: 332 SGKVVF 337
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339 |
| >gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 2e-22
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 11/189 (5%)
Query: 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 125
++PG V VFG G +GL +A+ K GASRV + + +K + AK G TE V+P
Sbjct: 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSRE 214
Query: 126 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF 185
D Q+ + G D E G + A+E +G GT ++ GV A +S PF
Sbjct: 215 DPEAQK---EDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPF 270
Query: 186 QLVTGRVWKG--TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG 243
+++ T G F + P + +I V V+H + L E+ EA M
Sbjct: 271 -----EIFQKELTIIGSFINPYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS 325
Query: 244 GDCLRCVLK 252
G L+ V+
Sbjct: 326 GGALKVVVV 334
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334 |
| >gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-22
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 24 TFSQYTVVHDV--SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT 81
F++Y V+D ++A + ++ +L + TG A ++ G VAVFG+G
Sbjct: 119 VFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGAEL-ANIKLGDTVAVFGIGP 177
Query: 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G 140
VGL GA+ GA R+I + P + + AK +G T+ V+ K+ D ++Q+L LT G G
Sbjct: 178 VGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGD-VVEQIL-KLTGGKG 235
Query: 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
VD G AL+ G GT V +
Sbjct: 236 VDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYL 274
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351 |
| >gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-21
Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 11/223 (4%)
Query: 33 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA 92
D ++ K+ + LLG +PTG A+V PG VAV G G VGL A+
Sbjct: 131 DGTLLKLPDGLSDEAALLLGDILPTGYFGAKR-AQVRPGDTVAVIGCGPVGLCAVLSAQV 189
Query: 93 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV 151
GA+RV +D P++ +RA G E +N +D +P+++V + T+G G D E +G
Sbjct: 190 LGAARVFAVDPVPERLERAAALG-AEPINFED-AEPVERVR-EATEGRGADVVLEAVGGA 246
Query: 152 SVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGT-AFGGFKSRSQVPWL 210
+ + A + G VGV + +E PF + T FG RS P L
Sbjct: 247 AALDLAFDLVRP-GGVISSVGVHTA-EEF---PFPGLDAYNKNLTLRFGRCPVRSLFPEL 301
Query: 211 VDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253
+ + ++ + H M L E EA+R L+ VL
Sbjct: 302 LPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLDP 344
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344 |
| >gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 8e-21
Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 26/238 (10%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA-VWNTAKVEPGSIVAVFGLGTVG 83
F++Y VV + LD+ L+ P +GA A V G V V G G +G
Sbjct: 117 FAEYIVV-PADALLVPEGLSLDQAALVE---PLAIGAHAVRRAGVTAGDTVLVVGAGPIG 172
Query: 84 LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVD 142
L V + AKA GA RVI +DID ++ + A+ G + +N D D + L +LTDG G D
Sbjct: 173 LGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGDED--VAARLRELTDGEGAD 229
Query: 143 YSFECIGNVSVMRAALE-CCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 201
+ GN + M A+E H G V+VG++ F K G
Sbjct: 230 VVIDATGNPASMEEAVELVAHG--GRVVLVGLSKGPVTFPDPEF------HKKELTILG- 280
Query: 202 KSRSQVPW----LVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM--HGGDCLRCVLKM 253
SR+ ++D ++ + +TH ++ EAF G ++ +++
Sbjct: 281 -SRNATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-20
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 29/239 (12%)
Query: 26 SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLA 85
++ VV + + P ++ L T L V + A+ G VAV GLG VGL
Sbjct: 55 AERVVVPANLLVPLPDGLPPERAALTALA-ATALNGVRD-AEPRLGERVAVVGLGLVGLL 112
Query: 86 VAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 145
A+ AKAAGA V+G+D D + + A+ G + V D ++ G D
Sbjct: 113 AAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTAD--------EIGGRGADVVI 164
Query: 146 ECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF-----QLVTGRVWKGTAFGG 200
E G+ S + AL G V+VG + F + + +V+
Sbjct: 165 EASGSPSALETALRLLRDR-GRVVLVGWYGLKPLLLGEEFHFKRLPIRSSQVYGIGR--- 220
Query: 201 FKSRSQVPWLVDKYM------KKEIKVDEYVTHNMTLGEINEAFRYM--HGGDCLRCVL 251
W + + E +++ +TH + + EA+R + +CL+ VL
Sbjct: 221 --YDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECLKVVL 277
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277 |
| >gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-19
Identities = 62/233 (26%), Positives = 89/233 (38%), Gaps = 24/233 (10%)
Query: 19 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGSIVA 75
+ F++Y + + P + LGC + V+ + G VA
Sbjct: 81 GLSGGAFAEYDLADADHAVPL-PSLLDGQAFPGEPLGCAL-----NVFRRGWIRAGKTVA 134
Query: 76 VFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135
V G G +GL + A AAGA RVI ID P + A+ G TE V D + +++V +
Sbjct: 135 VIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVV-TDDSEAIVERV-RE 192
Query: 136 LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWK 194
LT G G D E +G+ + A E + G VI G G RP T WK
Sbjct: 193 LTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQDG----PRPVPFQTWN-WK 246
Query: 195 GTAFGGFKSRSQVPWL------VDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
G R L V + + +TH L E+ +AF
Sbjct: 247 GIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAA 299
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312 |
| >gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 7e-17
Identities = 69/236 (29%), Positives = 103/236 (43%), Gaps = 26/236 (11%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT 81
F++Y VV + ++ K D P + + LG V T L V G V + G G
Sbjct: 121 FAEYVVVPEENLWKNDKDIPPEIASIQEPLGNAVHTVL-----AGDV-SGKSVLITGCGP 174
Query: 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGV 141
+GL AKAAGAS VI D +P + + AK G +NP++ D + +V GV
Sbjct: 175 IGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREED--VVEVKSVTDGTGV 232
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKG-TAFG- 199
D E GN + L+ G G I+G+ + L ++KG T G
Sbjct: 233 DVVLEMSGNPKAIEQGLKALTPG-GRVSILGL--PPGPVD---IDLNNLVIFKGLTVQGI 286
Query: 200 -G---FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 251
G F++ QV L+ ++ + +TH + L + EAF M G C + VL
Sbjct: 287 TGRKMFETWYQVSALLK---SGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVL 339
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341 |
| >gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-16
Identities = 59/190 (31%), Positives = 81/190 (42%), Gaps = 15/190 (7%)
Query: 56 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 115
TG A +A V PGS V V G G VGL AK GA R+I + + A+ FG
Sbjct: 155 GTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFG 213
Query: 116 VTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174
T+ V + ++ + +V +LT G G D EC+G M A+ G G VGV
Sbjct: 214 ATDIV-AERGEEAVARVR-ELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVP 270
Query: 175 ASGQEISTRP--FQLVTGRVWKGTAFGGFKS-RSQVPWLVDKYMKKEIKVDEYVTHNMTL 231
G E+ R F+ V GG R +P L+D + I + L
Sbjct: 271 HGGVELDVRELFFRNVGLA-------GGPAPVRRYLPELLDDVLAGRINPGRVFDLTLPL 323
Query: 232 GEINEAFRYM 241
E+ E +R M
Sbjct: 324 DEVAEGYRAM 333
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345 |
| >gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-15
Identities = 68/214 (31%), Positives = 97/214 (45%), Gaps = 23/214 (10%)
Query: 33 DVSVAKIDPQAPLDKVCLLGCGVPTGL-GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAK 91
D S+ K+ + +L +PTG V N KV+PG VA+ G G VGLA A+
Sbjct: 129 DNSLYKLPEGVDEEAAVMLSDILPTGYECGVLN-GKVKPGDTVAIVGAGPVGLAALLTAQ 187
Query: 92 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGN 150
S++I +D+D + + AK G T VN D I+QVL +LTDG GVD E +G
Sbjct: 188 LYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGD-AIEQVL-ELTDGRGVDVVIEAVG- 244
Query: 151 VSVMRAALECCHK----GWGTSVIVGVAASGQEISTRPFQLVTGRVW-KGTAFG-GFKSR 204
+ A E C + G G VGV +P L ++W K G
Sbjct: 245 ---IPATFELCQELVAPG-GHIANVGV-------HGKPVDLHLEKLWIKNITITTGLVDT 293
Query: 205 SQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 238
+ P L+ ++ + VTH L EI +A+
Sbjct: 294 NTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAY 327
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345 |
| >gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-15
Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 56 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 115
PTG + A V+PG VAVFG G VGL A A GASRV +D P++ D A++ G
Sbjct: 163 PTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIG 221
Query: 116 VTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149
++ D D P++Q+L L GGVD + +C+G
Sbjct: 222 A-IPIDFSDGD-PVEQIL-GLEPGGVDRAVDCVG 252
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375 |
| >gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-14
Identities = 42/171 (24%), Positives = 61/171 (35%), Gaps = 14/171 (8%)
Query: 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 130
G V V G G +G V A+ AGA+ ++ D+ A+ G E VN
Sbjct: 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAY 225
Query: 131 QVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTG 190
G D FE G + + +AL G GT V VG+ + P +
Sbjct: 226 AAD----KGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLGGPVPL---PLNALVA 277
Query: 191 R--VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFR 239
+ +G+ F+ + V I V +T L E EAF
Sbjct: 278 KELDLRGS----FRFDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFA 324
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339 |
| >gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 6e-14
Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 10/229 (4%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGL 84
+++Y +V L C T AV + V + G G +GL
Sbjct: 130 YAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGL 189
Query: 85 AVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 144
KA G + +I +DID K + AK G VN D D + ++ GGVD
Sbjct: 190 MALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKR--IIKAAGGGVDAV 247
Query: 145 FECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSR 204
+ + N + A + KG G V+VG+ + P + +G+ G S
Sbjct: 248 IDFVNNSATASLAFDILAKG-GKLVLVGLFGGEATLPL-PLLPLRALTIQGSYVG---SL 302
Query: 205 SQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 252
++ LV + K K+ L ++N+A + G + R VLK
Sbjct: 303 EELRELVA--LAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLK 349
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350 |
| >gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-13
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 52 GCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 111
GC T + A+ ++ G V V G G +GL A A AAGA+RV+ D P + + A
Sbjct: 103 GCATATVMAALEAAGDLK-GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA 161
Query: 112 KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171
+FG T P + ++ GVD + E G + +RA LE G GT+V+
Sbjct: 162 LSFGATALAEP---EVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLA 217
Query: 172 GVAASGQEISTRPFQLV 188
G G ++ P Q+V
Sbjct: 218 GSVFPGGPVALDPEQVV 234
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280 |
| >gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 67 KVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 125
++PGS V V G+G +G +AV + +A + VI +D + A+ G +N
Sbjct: 164 YLDPGSTVVVIGVGGLGHIAV-QILRALTPATVIAVDRSEEALKLAERLGADHVLNAS-- 220
Query: 126 DKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP 184
D +++V +LT G G D + +G+ + A + KG G VIVG G + T
Sbjct: 221 DDVVEEVR-ELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGHG-RLPTSD 277
Query: 185 FQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG 244
+ T G+ G +R+++ +V + + KV +T L + NEA + G
Sbjct: 278 L-VPTEISVIGS-LWG--TRAELVEVVA--LAESGKVKVEITKFP-LEDANEALDRLREG 330
Query: 245 DCL-RCVL 251
R VL
Sbjct: 331 RVTGRAVL 338
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340 |
| >gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 64/225 (28%), Positives = 94/225 (41%), Gaps = 15/225 (6%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTV 82
TF++Y + V I ++ L C T A+ A ++PG V + G G +
Sbjct: 120 TFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKAL-KKAGLKPGDWVVISGAGGGL 178
Query: 83 G-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGV 141
G L V AKA G RVI ID+ +K + AK G FV+ K D ++ V GG
Sbjct: 179 GHLGVQY-AKAMGL-RVIAIDVGDEKLELAKELGADAFVDFKKSD-DVEAVKELTGGGGA 235
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGG 200
+ + AL+ G GT V VG+ G I PF LV G G+ G
Sbjct: 236 HAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPGGF-IPLDPFDLVLRGITIVGSLVG- 292
Query: 201 FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 245
+R + ++ + ++K V L ++NE F M G
Sbjct: 293 --TRQDLQEALEFAARGKVKPHIQVV---PLEDLNEVFEKMEEGK 332
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341 |
| >gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-12
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGL 84
+++Y ++ + + ++ ++ L + GL AV A++ PG + V G G +GL
Sbjct: 118 YAEYMLLSEALLLRVPDGLSMEDAALTE-PLAVGLHAV-RRARLTPGEVALVIGCGPIGL 175
Query: 85 AVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGV--- 141
AV KA G ++ D P++ A G V+P D P +L G
Sbjct: 176 AVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAA-DSPFAAWAAELARAGGPKP 234
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGV 173
FEC+G +++ +E G G V+VGV
Sbjct: 235 AVIFECVGAPGLIQQIIEGAPPG-GRIVVVGV 265
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341 |
| >gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 58/246 (23%), Positives = 92/246 (37%), Gaps = 29/246 (11%)
Query: 8 RFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-- 65
++ I G H G +++Y V ++ I ++ P W+
Sbjct: 109 QYGILG---EHVDGG--YAEYVAVPARNLLPIPDNLSFEE----AAAAPLTFLTAWHMLV 159
Query: 66 --AKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 122
A++ PG V V G G+ VG A + AK GA VI K +RAK G ++
Sbjct: 160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDY 218
Query: 123 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
+ D + + +LT GVD E +G + +L+ +G G V G A +G E
Sbjct: 219 RKEDFV--REVRELTGKRGVDVVVEHVGA-ATWEKSLKSLARG-GRLVTCG-ATTGYEAP 273
Query: 182 TRPFQLVTGRVWK--GTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFR 239
+ V R G+ G + LV K+ + L E EA R
Sbjct: 274 I-DLRHVFWRQLSILGSTMGTKAELDEALRLVF-----RGKLKPVIDSVFPLEEAAEAHR 327
Query: 240 YMHGGD 245
+ +
Sbjct: 328 RLESRE 333
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342 |
| >gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-11
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 7/171 (4%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG-LGTV 82
+++Y VV + + ++ L T A+++ A ++PG V V G G V
Sbjct: 96 GYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGV 155
Query: 83 GLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GV 141
G A + AKA GA V+ + +K + K G +N ++ D + + +LT G GV
Sbjct: 156 GSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREED--FVEQVRELTGGKGV 212
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV 192
D + +G A+L G G V +G + G + L+ R+
Sbjct: 213 DVVLDTVGG-DTFAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRL 261
|
Length = 326 |
| >gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-11
Identities = 63/232 (27%), Positives = 93/232 (40%), Gaps = 17/232 (7%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT 81
F++Y VV ++ K P + + LG V T L A G V V G G
Sbjct: 119 FAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL------AGPISGKSVLVTGAGP 172
Query: 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G 140
+GL AKA+GA VI D + + + AK G T VNP D + + + DLTDG G
Sbjct: 173 IGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKED--VVKEVADLTDGEG 230
Query: 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKG-TAFG 199
VD E G + L+ G G ++G+ I + G G T
Sbjct: 231 VDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRH 289
Query: 200 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 251
F++ V L+ + +D +TH + + F M G + +L
Sbjct: 290 MFETWYTVSRLIQSGK---LDLDPIITHKFKFDKFEKGFELMRSGQTGKVIL 338
|
This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340 |
| >gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-10
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 13/179 (7%)
Query: 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV----N 121
A + P + V V G G +GL A+A GA R++ +D+D ++ AK G E V N
Sbjct: 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTN 236
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
+D + ++++ + GG+D SF+C+G M ALE G G +VG+ G
Sbjct: 237 IEDVESEVEEIQKAMG-GGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGM---GHNEM 291
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG--EINEAF 238
T P R + G F+ R+ P ++ +I V +TH E+ EAF
Sbjct: 292 TVPLTPAAAR--EVDVVGVFRYRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAF 348
|
Length = 364 |
| >gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-10
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 5/176 (2%)
Query: 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP-KDHDK 127
PG+ V V+G G +GLA AKAAGAS+VI +I ++ + AK G NP K D
Sbjct: 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDC 261
Query: 128 PIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ 186
+ ++++T G G D E G +E G V +G AA+ + Q
Sbjct: 262 LSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQ 321
Query: 187 LVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMH 242
+ ++ G P ++ +I + + +T L I EA +
Sbjct: 322 VRRAQIVGAQGHSGH---GIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAAS 374
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384 |
| >gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-10
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 17 YHFMGTSTF---SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSI 73
Y F+G+ ++Y VV ++ + P++ + + GL A ++ A+ G
Sbjct: 106 YDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHA-FHLAQGCEGKN 163
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP-IQQV 132
V + G GT+GL + A A GA V IDI+ +K AK+ G + N ++ P IQ V
Sbjct: 164 VIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSV 223
Query: 133 LVDL 136
L +L
Sbjct: 224 LREL 227
|
Length = 347 |
| >gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDIDPKKFDRAKNFGVTEF 119
AV + + PG V VFG G +GL A+ AK GA+ V+ G + D + D AK G
Sbjct: 155 AVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGA--- 211
Query: 120 VNPKDHDKPIQQVLVD----LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 172
D ++ L + +TDG G D EC G V + ALE KG G V VG
Sbjct: 212 ----DAVNGGEEDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVG 264
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306 |
| >gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-10
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 56 PTGL-GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF 114
PTG GAV TA V PGS V + G G VGLA A A+ GA+ VI D++P + +A++F
Sbjct: 172 PTGYHGAV--TAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF 229
Query: 115 GVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149
G E V+ +Q+ L + VD + +C+G
Sbjct: 230 GC-ETVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393 |
| >gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 7e-10
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVWNTAKVEPGSIVAVFGLGTV 82
++Y V+ + + + ++ L C G+ T A++ ++PG V V G G V
Sbjct: 114 VLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGL-TAWNALFGLGPLKPGDTVLVQGTGGV 172
Query: 83 GLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GV 141
L + AKAAGA RVI +K +RAK G +N + ++VL LT G GV
Sbjct: 173 SLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVL-KLTGGRGV 230
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR-VWKGTAFGG 200
D+ E +G + +++ G G ++G SG E L+T +G A G
Sbjct: 231 DHVVE-VGGPGTLAQSIKAVAPG-GVISLIGF-LSGFEAPVLLLPLLTKGATLRGIAVG- 286
Query: 201 FKSRSQ 206
SR+Q
Sbjct: 287 --SRAQ 290
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336 |
| >gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-10
Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 30/245 (12%)
Query: 12 NGKPIY--HFMGTST-----FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 64
G + T +++Y V + PL + L C T V++
Sbjct: 98 RGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGIT----VYS 153
Query: 65 ---TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 121
A PG VAV G+G +G + A+A G + I P K + A+ G E V+
Sbjct: 154 ALRDAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVD 212
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
++ GG D + + + AAL +G G V+VG+ S S
Sbjct: 213 SG------AELDEQAAAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPF-S 264
Query: 182 TRPFQLVTGRVW-KGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
F L+ R G+ GG + +D + ++K L + NEA+
Sbjct: 265 PDIFPLIMKRQSIAGSTHGGRADLQE---ALDFAAEGKVKPM---IETFPLDQANEAYER 318
Query: 241 MHGGD 245
M GD
Sbjct: 319 MEKGD 323
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330 |
| >gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-09
Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 21/241 (8%)
Query: 16 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVA 75
Y F++Y V + S+ K+ + L C V T + A+ A V+ G V
Sbjct: 109 EYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KRAGVKKGDTVL 167
Query: 76 V-FGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134
V G VG+ + AKA GA RVI + P+K K G ++ + ++++
Sbjct: 168 VTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGSKFSEDVKKL-- 224
Query: 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWK 194
GG D E +G + +L +KG G V++G RP L+ K
Sbjct: 225 ----GGADVVIELVG-SPTIEESLRSLNKG-GRLVLIGNVT-PDPAPLRPGLLIL----K 273
Query: 195 GTAFGGFKSRSQVPWLVDKYMK--KEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251
G S S V++ +K KE K+ + ++L +INEA + G + R VL
Sbjct: 274 EIRIIG--SISATKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVL 331
Query: 252 K 252
K
Sbjct: 332 K 332
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332 |
| >gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 27/228 (11%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT 81
F + +VH K+ P + L L C L AV + A ++ +V + G G
Sbjct: 136 FPKEAIVH-----KVPDDIPPEDAILIEPLACA----LHAV-DRANIKFDDVVVLAGAGP 185
Query: 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G 140
+GL + A+ ++I +D+ ++ A+ FG +NP + D ++++ +LT G G
Sbjct: 186 LGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDV-VEKIK-ELTGGYG 243
Query: 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV---WKGTA 197
D E G+ S + L K G V V G + T + ++ R G+
Sbjct: 244 CDIYIEATGHPSAVEQGLNMIRK-LGRFVEFSVF--GDPV-TVDWSIIGDRKELDVLGSH 299
Query: 198 FGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 245
G + P +D + D VTH L + EAF M GD
Sbjct: 300 LGPYCY----PIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGD 343
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350 |
| >gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT 81
F++Y V+ +V KI P D + G V T L ++ G V + G G
Sbjct: 121 FAEYLVIPAFNVWKIPDDIPDDLAAIFDPFGNAVHTALS--FDLV----GEDVLITGAGP 174
Query: 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G 140
+G+ A AK GA V+ D++ + + A+ G T VN D ++ V+ +L G
Sbjct: 175 IGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKED--LRDVMAELGMTEG 232
Query: 141 VDYSFECIGNVSVMRAALECCHKG 164
D E G S R L+ + G
Sbjct: 233 FDVGLEMSGAPSAFRQMLDNMNHG 256
|
Length = 341 |
| >gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 52/248 (20%), Positives = 84/248 (33%), Gaps = 40/248 (16%)
Query: 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT---------GLGAVW-NTAKVEPG 71
F +Y V AKI ++ L G+ T GL + G
Sbjct: 96 NGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKG 155
Query: 72 SIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD-HDKPI 129
V ++G + VG + AK AG +VI PK FD K+ G D HD +
Sbjct: 156 KPVLIWGGSSSVGTLAIQLAKLAGY-KVITT-ASPKNFDLVKSLGADAVF---DYHDPDV 210
Query: 130 QQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT 189
+ + T G + Y+ +CI + E +G + G+ +S P T
Sbjct: 211 VEDIRAATGGKLRYALDCISTPESAQLCAE----------ALGRSGGGKLVSLLPVPEET 260
Query: 190 GR--------VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMT-----LGEINE 236
V T FG + + KY+ + ++ + H + L + E
Sbjct: 261 EPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQE 320
Query: 237 AFRYMHGG 244
+ G
Sbjct: 321 GLDLLRKG 328
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339 |
| >gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 4e-08
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 44 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 103
PL+ V ++ V T A A ++ G +V V G G VG + + AKA GA+ V+ IDI
Sbjct: 141 PLEHVSVVADAVTTPYQAAVQ-AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDI 198
Query: 104 DPKKFDRAKNFGVTEFVNPKD 124
DP+K + K FG +NPKD
Sbjct: 199 DPEKLEMMKGFGADLTLNPKD 219
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349 |
| >gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 5e-08
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 31/178 (17%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA-VWN---TAKVEPGSIVAVFGLG 80
++ + VV + V KI L C G V++ V PG V V G+G
Sbjct: 125 YADHIVVDERFVFKIPEGLDSAAAAPLLCA-----GITVYSPLKRNGVGPGKRVGVVGIG 179
Query: 81 TVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD--KPIQQ---VLV 134
+G LAV + AKA GA V P K + A G EF+ KD + K +++
Sbjct: 180 GLGHLAV-KFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLII 237
Query: 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV 192
D D +S+++ GT V+VG + PF L+ GR
Sbjct: 238 DTVSASHDLDPY----LSLLKPG--------GTLVLVGAPEEPLPVP--PFPLIFGRK 281
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 3e-07
Identities = 64/234 (27%), Positives = 98/234 (41%), Gaps = 21/234 (8%)
Query: 19 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 78
G F++ VV +V + ++ L T A+ A+++PG V V G
Sbjct: 88 LTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLG 147
Query: 79 L-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 137
G VGLA + AKA GA RVI +K A+ G ++ D +++ + LT
Sbjct: 148 AAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDY--RDPDLRERVKALT 204
Query: 138 DG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-------VT 189
G GVD ++ +G V A+L G G +++G ASG EI P L V
Sbjct: 205 GGRGVDVVYDPVGG-DVFEASLRSLAWG-GRLLVIG-FASG-EIPQIPANLLLLKNISVV 260
Query: 190 GRVWKGTAFGGFKSRSQVPW--LVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
G V+ G + L D + E K+ +V+ L + EA R +
Sbjct: 261 G-VYWGAYARREPELLRANLAELFD--LLAEGKIRPHVSAVFPLEQAAEALRAL 311
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323 |
| >gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-07
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 21 GTSTFSQYTVVHDVSVAKIDP-QAPL-DKVCLLGCGVPTGLGA---VWNTAKVEPGSIVA 75
G S + +Y + + K+DP APL + +LG GL A + + + + G V
Sbjct: 99 GVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLG---MPGLTAYFGLLDIGQPKAGETVV 155
Query: 76 VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTEFVNPKDHDKPIQQVL 133
V G VG V + AK G RV+GI +K D G ++ K D Q L
Sbjct: 156 VSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKAED--FAQAL 212
Query: 134 VDLTDGGVDYSFECIGNVSVMRAALE 159
+ G+D FE +G V+ A L
Sbjct: 213 KEACPKGIDVYFENVGGE-VLDAVLP 237
|
Length = 340 |
| >gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 6e-07
Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 24/236 (10%)
Query: 20 MGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 76
MG + ++++YT+V + V ID ++ L T G+++ + ++PG + +
Sbjct: 89 MGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLI 148
Query: 77 FGLGT--VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVL 133
G GT VGLA + AKA GA V P++ K G E ++ + ++
Sbjct: 149 RG-GTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAA- 205
Query: 134 VDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR--PFQLVTGR 191
GG D E +G ++ + +L G G + G+ GQ P +
Sbjct: 206 ----PGGFDKVLELVGTATL-KDSLRHLRPG-GIVCMTGLLG-GQWTLEDFNPMDDIPSG 258
Query: 192 VWKGTAFGGFKSR-SQVP--WLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG 244
V T G Q P L D + + + T EI EA YM
Sbjct: 259 V-NLTLTGSSSGDVPQTPLQELFDFVAAGHLDI--PPSKVFTFDEIVEAHAYMESN 311
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320 |
| >gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 4e-06
Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 11/166 (6%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDK-VCLLGCGVP--TGLGAVWNTAKVEPGSIVAVFG-L 79
T ++Y VV + + ++ L G+P T A+++ A + G V V G
Sbjct: 98 TAAEYVVVPADQLVPLPDGVSFEQGAAL---GIPALTAYRALFHRAGAKAGETVLVHGGS 154
Query: 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG 139
G VG A + A+ AGA RVI + + + G N + D ++L
Sbjct: 155 GAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNYRAED-LADRILAATAGQ 212
Query: 140 GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF 185
GVD E + NV + L+ G G V+ G I P
Sbjct: 213 GVDVIIEVLANV-NLAKDLDVLAPG-GRIVVYGSGGLRGTIPINPL 256
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 8e-06
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 16/139 (11%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP----TGLGAVWNTAKVEPGSIVAVFG- 78
+++Y VV +A + +P T A++ ++ G V + G
Sbjct: 98 AYAEYVVVPADELALKPANLSFE----EAAALPLAGLTAWQALFELGGLKAGQTVLIHGA 153
Query: 79 LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD 138
G VG + AKA GA RVI D ++ G E ++ D
Sbjct: 154 AGGVGSFAVQLAKARGA-RVIAT-ASAANADFLRSLGADEVIDYTKGD-----FERAAAP 206
Query: 139 GGVDYSFECIGNVSVMRAA 157
GGVD + +G ++ R+
Sbjct: 207 GGVDAVLDTVGGETLARSL 225
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309 |
| >gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 23/170 (13%)
Query: 19 FMGTST--------FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP 70
F G++ F++Y VV +A +KV + P AV A +
Sbjct: 112 FFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKAD-EKV--MAFAEPL---AVAIHAAHQA 165
Query: 71 GSI----VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 126
G + V V G+G +G + K GA+ ++ D+ P+ A+ G + VNP++ D
Sbjct: 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDD 225
Query: 127 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 176
+ G D SFE G+ S + LE + G V VG+ +
Sbjct: 226 LDHYKA----EKGYFDVSFEVSGHPSSINTCLEVT-RAKGVMVQVGMGGA 270
|
Length = 343 |
| >gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 25 FSQYTVVHDVSVAKI-DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVG 83
+++Y + ++A+I D + LL GV T A+ N+ +PG +VAV G+G +G
Sbjct: 119 YAEYMLAPAEALARIPDDLDAAEAAPLLCAGV-TTFNALRNS-GAKPGDLVAVQGIGGLG 176
Query: 84 -LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVD 142
LAV + A G R + I K D A+ G +++ D + L +L GG
Sbjct: 177 HLAV-QYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSKEDVA--EALQEL--GGAK 230
Query: 143 YSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 191
N + A + G +I+G A+G+ ++ P QL+ GR
Sbjct: 231 LILATAPNAKAISALVGGLAPR-GKLLILG--AAGEPVAVSPLQLIMGR 276
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333 |
| >gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 17 YHFMGTS--TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG-SI 73
YH +F++YTVV +V + ++ L C T A++ ++E G +I
Sbjct: 86 YHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTI 145
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVL 133
+ G G VG + AK AG RVI + F+ K+ G ++ D D + + +
Sbjct: 146 LITGGAGGVGSFAVQLAKRAGL-RVI-TTCSKRNFEYVKSLGADHVIDYNDED--VCERI 201
Query: 134 VDLTDG-GVDYSFECIG 149
++T G GVD + +G
Sbjct: 202 KEITGGRGVDAVLDTVG 218
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325 |
| >gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 66 AKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK- 123
+ ++PG +A++G G +G LA+ A +VI +DI+ K AK G +N K
Sbjct: 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSKR 216
Query: 124 --DHDKPIQQVLVDLTDGGVD 142
D K IQ+ GG
Sbjct: 217 VEDVAKIIQE-----KTGGAH 232
|
Length = 338 |
| >gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 52 GCGVPTGLGA----VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 107
GV G+ A + T +E G VAV GLG VG +AE GA ++I DI+ +
Sbjct: 6 AYGVFLGMKAAAEHLLGTDSLE-GKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEA 63
Query: 108 FDRA-KNFGVT 117
RA + FG T
Sbjct: 64 VARAAELFGAT 74
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 200 |
| >gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 3e-04
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 117
+ + G G VG ++AE + G V+ ID DP++ + + GV
Sbjct: 1 IIIIGYGRVGRSLAEELREGG-PDVVVIDKDPERVEELREEGVP 43
|
This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. Length = 116 |
| >gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 19/146 (13%)
Query: 19 FMGTSTFSQYTVV---HDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-----AKVE 69
+ G T SQY +V D S+ + L++ P LG + K+
Sbjct: 95 YGGQGTLSQYLLVDPKKDKKSITRKPENISLEE----AAAWPLVLGTAYQILEDLGQKLG 150
Query: 70 PGSIVAVFGLGT-VGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD- 126
P S V V G T VG + AK V+G + + K G F++ H
Sbjct: 151 PDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGT-CSSRSAELNKKLGADHFIDYDAHSG 209
Query: 127 -KPIQQVLVDLTDGG-VDYSFECIGN 150
K ++ VL ++ G D +C+G
Sbjct: 210 VKLLKPVLENVKGQGKFDLILDCVGG 235
|
This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352 |
| >gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 122
+AV GLG VGL +A G V G+DID +K D+ G + P
Sbjct: 3 IAVIGLGYVGLPLAALLADLGHD-VTGVDIDQEKVDKLNK-GKSPIYEP 49
|
Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409 |
| >gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113
+ V GLG VGL +A A A+ +VIG+DI+ KK D+
Sbjct: 12 IGVIGLGYVGLPLA-AAFASAGFKVIGVDINQKKVDKLNR 50
|
Length = 436 |
| >gnl|CDD|217692 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.003
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113
+AV GLG VGL A G V+G+DI+ K D+ N
Sbjct: 3 IAVIGLGYVGLPTAVCLAEIG-HDVVGVDINQSKIDKLNN 41
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 188 |
| >gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 20/104 (19%)
Query: 57 TGLGAVWNTA--------KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 107
L + TA KV G V + G G VG A+ E A AGA V G ++
Sbjct: 118 VCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYG--TASER 174
Query: 108 FDRA-KNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIG 149
A + G T KD + LT GGVD F+ +G
Sbjct: 175 NHAALRELGATPIDYRTKDW------LPAMLTPGGVDVVFDGVG 212
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113
G V G GT LA+ GA GASRV+ +DIDP+ + A+
Sbjct: 46 GKTVLDLGAGTGILAI--GAALLGASRVLAVDIDPEALEIARA 86
|
Length = 198 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 255 | |||
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 100.0 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 100.0 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 100.0 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 100.0 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 100.0 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 100.0 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 100.0 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 100.0 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 100.0 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 100.0 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 100.0 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 100.0 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 100.0 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 100.0 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 100.0 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 100.0 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 100.0 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 100.0 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 100.0 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 100.0 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 100.0 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 100.0 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 100.0 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 100.0 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 100.0 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 100.0 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 100.0 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 100.0 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 100.0 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 100.0 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 100.0 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 100.0 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 100.0 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 100.0 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 100.0 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 100.0 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 100.0 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 100.0 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 100.0 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 100.0 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 99.98 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 99.98 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 99.97 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 99.97 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 99.97 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 99.97 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 99.97 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 99.97 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 99.97 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 99.97 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 99.97 | |
| KOG0025 | 354 | consensus Zn2+-binding dehydrogenase (nuclear rece | 99.97 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 99.97 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 99.97 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 99.97 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 99.97 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 99.97 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 99.97 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 99.97 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 99.97 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 99.97 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 99.97 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 99.97 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 99.97 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 99.97 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 99.97 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 99.97 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 99.97 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 99.96 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 99.96 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 99.96 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 99.96 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 99.96 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 99.96 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 99.96 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 99.96 | |
| TIGR02817 | 336 | adh_fam_1 zinc-binding alcohol dehydrogenase famil | 99.96 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 99.96 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 99.96 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 99.96 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 99.96 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 99.96 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 99.96 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 99.96 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 99.96 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 99.96 | |
| cd08249 | 339 | enoyl_reductase_like enoyl_reductase_like. Member | 99.96 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 99.96 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 99.96 | |
| cd08276 | 336 | MDR7 Medium chain dehydrogenases/reductase (MDR)/z | 99.96 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 99.96 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 99.96 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 99.96 | |
| cd08251 | 303 | polyketide_synthase polyketide synthase. Polyketid | 99.95 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 99.95 | |
| TIGR02823 | 323 | oxido_YhdH putative quinone oxidoreductase, YhdH/Y | 99.95 | |
| smart00829 | 288 | PKS_ER Enoylreductase. Enoylreductase in Polyketid | 99.95 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 99.95 | |
| cd08252 | 336 | AL_MDR Arginate lyase and other MDR family members | 99.95 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 99.95 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 99.95 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 99.95 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 99.95 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 99.95 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 99.95 | |
| cd05195 | 293 | enoyl_red enoyl reductase of polyketide synthase. | 99.95 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 99.95 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 99.95 | |
| cd08258 | 306 | Zn_ADH4 Alcohol dehydrogenases of the MDR family. | 99.94 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 99.94 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 99.94 | |
| cd08288 | 324 | MDR_yhdh Yhdh putative quinone oxidoreductases. Yh | 99.94 | |
| cd08272 | 326 | MDR6 Medium chain dehydrogenases/reductase (MDR)/z | 99.94 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 99.94 | |
| cd08264 | 325 | Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam | 99.94 | |
| cd08247 | 352 | AST1_like AST1 is a cytoplasmic protein associated | 99.94 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 99.94 | |
| cd08273 | 331 | MDR8 Medium chain dehydrogenases/reductase (MDR)/z | 99.94 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 99.94 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 99.94 | |
| cd08271 | 325 | MDR5 Medium chain dehydrogenases/reductase (MDR)/z | 99.93 | |
| cd08267 | 319 | MDR1 Medium chain dehydrogenases/reductase (MDR)/z | 99.93 | |
| cd08275 | 337 | MDR3 Medium chain dehydrogenases/reductase (MDR)/z | 99.93 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 99.92 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 99.84 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 99.62 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 99.49 | |
| PF13602 | 127 | ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ | 99.43 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.91 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.82 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.72 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.63 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.61 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.47 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.47 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 98.25 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.23 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.2 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.2 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.19 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.14 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 98.08 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 98.06 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.0 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 97.99 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.9 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 97.84 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.83 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.8 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 97.8 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.77 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 97.76 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 97.72 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 97.71 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.7 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 97.69 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 97.67 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 97.65 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.64 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.64 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 97.63 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.61 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.61 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 97.59 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 97.58 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 97.56 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.55 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 97.52 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 97.51 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 97.49 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 97.49 | |
| PF11017 | 314 | DUF2855: Protein of unknown function (DUF2855); In | 97.48 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.47 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 97.46 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 97.46 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 97.45 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.45 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.45 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 97.43 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 97.42 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 97.39 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 97.39 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 97.38 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 97.37 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 97.37 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 97.35 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 97.33 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 97.32 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.3 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 97.3 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 97.3 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 97.29 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 97.28 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.28 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 97.27 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 97.27 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 97.27 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.26 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.26 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 97.26 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.26 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 97.25 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 97.25 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 97.24 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.23 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 97.22 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.21 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.21 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 97.2 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.2 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 97.17 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.16 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 97.16 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 97.16 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 97.16 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 97.14 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 97.12 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 97.12 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 97.11 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 97.11 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 97.1 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.09 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 97.07 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 97.07 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 97.06 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.05 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 97.05 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.05 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 97.05 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 97.04 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 97.04 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.04 | |
| PLN02366 | 308 | spermidine synthase | 97.04 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 97.02 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.02 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.02 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 97.02 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 97.02 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 97.01 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 97.01 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 97.01 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 97.01 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.0 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.0 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.0 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 97.0 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.0 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 96.99 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 96.99 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 96.99 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.98 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 96.98 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 96.98 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.97 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 96.97 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 96.97 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 96.96 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 96.95 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 96.95 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 96.94 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 96.94 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.93 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 96.93 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.93 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 96.92 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 96.91 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.9 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 96.9 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.88 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.88 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 96.88 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.88 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.87 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.87 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 96.87 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.87 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 96.87 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.86 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 96.86 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 96.86 | |
| PRK05717 | 255 | oxidoreductase; Validated | 96.86 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 96.85 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 96.85 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 96.84 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 96.84 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 96.84 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.84 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 96.83 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 96.82 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.82 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 96.82 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 96.82 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 96.81 | |
| PRK08643 | 256 | acetoin reductase; Validated | 96.81 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 96.81 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 96.81 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.81 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 96.8 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 96.8 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.8 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 96.8 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 96.79 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 96.79 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 96.79 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 96.78 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.78 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 96.78 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 96.77 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 96.77 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 96.77 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 96.77 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 96.77 | |
| PLN02476 | 278 | O-methyltransferase | 96.77 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 96.77 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.76 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.76 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.76 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.76 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 96.75 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 96.75 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 96.74 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 96.74 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 96.74 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.74 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 96.73 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.73 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.73 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 96.73 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.73 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.72 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 96.72 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 96.71 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 96.71 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 96.71 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 96.71 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 96.7 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 96.69 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 96.69 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 96.68 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 96.68 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.67 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.66 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.64 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 96.64 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.64 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 96.63 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 96.62 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 96.62 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 96.62 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 96.62 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 96.61 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 96.61 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 96.6 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 96.59 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 96.59 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 96.59 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 96.59 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 96.59 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 96.57 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 96.56 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.56 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 96.55 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.55 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 96.54 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.54 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 96.54 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.54 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.54 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 96.53 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.53 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 96.52 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 96.52 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 96.51 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 96.51 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.51 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.51 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 96.48 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.48 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.48 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 96.47 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.47 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 96.46 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 96.46 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.46 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 96.46 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 96.46 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.46 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.44 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 96.43 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 96.42 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.42 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 96.42 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.42 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 96.41 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 96.39 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 96.38 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.38 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 96.37 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.37 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 96.37 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.36 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.35 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.35 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 96.34 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 96.34 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 96.34 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 96.33 | |
| PRK04266 | 226 | fibrillarin; Provisional | 96.33 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.33 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.31 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 96.31 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.31 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.31 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 96.31 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.29 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.29 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.26 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 96.25 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 96.25 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 96.24 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 96.24 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 96.22 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 96.22 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 96.21 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 96.2 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 96.2 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 96.2 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 96.18 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.18 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 96.17 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 96.17 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.16 | |
| PLN02256 | 304 | arogenate dehydrogenase | 96.15 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 96.14 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 96.14 | |
| PLN02823 | 336 | spermine synthase | 96.12 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.11 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.1 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 96.1 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.09 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 96.08 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.08 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.08 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 96.08 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 96.07 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 96.07 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 96.07 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 96.07 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.07 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 96.06 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.06 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 96.06 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.04 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.04 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 96.03 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 96.02 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 96.02 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 96.01 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 96.0 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 96.0 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 95.99 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 95.98 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.98 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.98 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 95.97 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 95.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 95.97 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 95.96 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.94 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 95.94 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.93 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.93 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 95.92 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.91 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 95.89 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 95.88 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.88 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 95.88 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 95.87 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.86 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 95.86 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.85 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 95.83 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 95.83 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 95.83 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 95.83 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 95.82 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 95.82 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.82 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 95.81 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.81 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.8 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 95.8 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 95.79 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.79 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 95.77 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 95.77 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 95.76 |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=273.29 Aligned_cols=238 Identities=27% Similarity=0.407 Sum_probs=209.3
Q ss_pred CCCCCCccccCCcccc-------cccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEE
Q 025257 2 MNDRKSRFSINGKPIY-------HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV 74 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~-------~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~v 74 (255)
.+|+.|.+|..|...+ ++..+|+||||+++|+.+++++|+++++++||.+.|++.|.|++| +..+++||++|
T Consensus 92 ~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V 170 (339)
T COG1064 92 ISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWV 170 (339)
T ss_pred CCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEE
Confidence 4688899999886444 556679999999999999999999999999999999999999998 66999999999
Q ss_pred EEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHH
Q 025257 75 AVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM 154 (255)
Q Consensus 75 lI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~ 154 (255)
+|.|.|++|++++|+|+.+|+ +|++++++++|.++++++|++++++.++ ++..+.+++. +|+++|+++ +..+
T Consensus 171 ~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~~~~--~~~~~~~~~~----~d~ii~tv~-~~~~ 242 (339)
T COG1064 171 AVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSSD--SDALEAVKEI----ADAIIDTVG-PATL 242 (339)
T ss_pred EEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEEcCC--chhhHHhHhh----CcEEEECCC-hhhH
Confidence 999999999999999999998 9999999999999999999999999776 7787777763 999999999 6669
Q ss_pred HHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecch
Q 025257 155 RAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGE 233 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (255)
+.+++.|+++ |+++++|........+++...+. +++++.|+..++. .++++++++..+|++.+. +.+.+++++
T Consensus 243 ~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~---~d~~e~l~f~~~g~Ikp~--i~e~~~l~~ 316 (339)
T COG1064 243 EPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTR---ADLEEALDFAAEGKIKPE--ILETIPLDE 316 (339)
T ss_pred HHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCH---HHHHHHHHHHHhCCceee--EEeeECHHH
Confidence 9999999997 99999999742233446566554 4999999998764 789999999999996654 436899999
Q ss_pred HHHHHHHhhCCCee-EEEEecC
Q 025257 234 INEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 234 ~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
+++|++.|.+++.. |+||.+.
T Consensus 317 in~A~~~m~~g~v~gR~Vi~~~ 338 (339)
T COG1064 317 INEAYERMEKGKVRGRAVIDMS 338 (339)
T ss_pred HHHHHHHHHcCCeeeEEEecCC
Confidence 99999999999877 9999875
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=260.14 Aligned_cols=250 Identities=74% Similarity=1.266 Sum_probs=234.5
Q ss_pred CCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHH
Q 025257 4 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVG 83 (255)
Q Consensus 4 ~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG 83 (255)
++.++|.-.|+.++.|++-.+|+||.+++...+.++++..+++.++++.+.+.|+|.|..+.++++||+++.|+|-|++|
T Consensus 126 DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VG 205 (375)
T KOG0022|consen 126 DGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVG 205 (375)
T ss_pred CCceeeeeCCCceEEecccccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHH
Confidence 45666655577787777777999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhcc
Q 025257 84 LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHK 163 (255)
Q Consensus 84 ~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~ 163 (255)
+++++-++..|++++|+++.+++|.+.++++|+++.+|+.+....+.+.+++.|++++|+.|||+|....+++++.+...
T Consensus 206 Lav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~ 285 (375)
T KOG0022|consen 206 LAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHK 285 (375)
T ss_pred HHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999986556788999999999999999999999999999999999
Q ss_pred CCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhC
Q 025257 164 GWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG 243 (255)
Q Consensus 164 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 243 (255)
++|+-+.+|....+..+++.++.+++++++.|+.+++++.+.+++.+++.+.++.+++.++|++++||++|++||+.|.+
T Consensus 286 GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~ 365 (375)
T KOG0022|consen 286 GWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHE 365 (375)
T ss_pred CCCeEEEEEecCCCcccccchhhhccccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhC
Confidence 88999999999888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEec
Q 025257 244 GDCLRCVLKM 253 (255)
Q Consensus 244 ~~~~k~vi~~ 253 (255)
++.+|.|+.+
T Consensus 366 GksiR~vl~~ 375 (375)
T KOG0022|consen 366 GKSIRCVLWM 375 (375)
T ss_pred CceEEEEEeC
Confidence 9999988864
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=273.08 Aligned_cols=244 Identities=22% Similarity=0.331 Sum_probs=206.8
Q ss_pred CCCCCCccccCCccccccc---CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEc
Q 025257 2 MNDRKSRFSINGKPIYHFM---GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 78 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~---~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G 78 (255)
+|+++.+|++ ||+|+... .+|+|+||+.+|++.++++|+++|+++||+++++++|||+++....++++|++|||+|
T Consensus 72 vG~~V~~~~~-GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~g 150 (326)
T COG0604 72 VGSGVTGFKV-GDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHG 150 (326)
T ss_pred eCCCCCCcCC-CCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEec
Confidence 4788999978 99999875 5799999999999999999999999999999999999999999999999999999998
Q ss_pred C-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHH
Q 025257 79 L-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRA 156 (255)
Q Consensus 79 ~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~ 156 (255)
+ |+||.+++|+|+++|+ .+++++.++++.++++++|+++++++++ +++.+.+++++++ ++|+|||++|++. +..
T Consensus 151 aaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~--~~~~~~v~~~t~g~gvDvv~D~vG~~~-~~~ 226 (326)
T COG0604 151 AAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYRE--EDFVEQVRELTGGKGVDVVLDTVGGDT-FAA 226 (326)
T ss_pred CCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCc--ccHHHHHHHHcCCCCceEEEECCCHHH-HHH
Confidence 6 9999999999999998 8888888888888999999999999998 8899999999999 9999999999999 999
Q ss_pred HHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCC---CccCcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 157 ALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF---KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 157 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
++++++++ |+++.+|..++....+++...+.. .....|+..... ...+.+.++.+++++|.+++ .+..+||++
T Consensus 227 ~l~~l~~~-G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~--~i~~~~~l~ 303 (326)
T COG0604 227 SLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKP--VIDRVYPLA 303 (326)
T ss_pred HHHHhccC-CEEEEEecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCcc--eeccEechh
Confidence 99999997 999999997533344455555544 777777765533 11346677999999999655 466899999
Q ss_pred hHHHHHHHhhC-CCee-EEEEec
Q 025257 233 EINEAFRYMHG-GDCL-RCVLKM 253 (255)
Q Consensus 233 ~~~~a~~~~~~-~~~~-k~vi~~ 253 (255)
+..++...... ++.. |+||++
T Consensus 304 e~~~a~a~~~~~~~~~GKvvl~~ 326 (326)
T COG0604 304 EAPAAAAHLLLERRTTGKVVLKV 326 (326)
T ss_pred hhHHHHHHHHcccCCcceEEEeC
Confidence 96555553322 3554 999874
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=260.06 Aligned_cols=231 Identities=64% Similarity=1.108 Sum_probs=219.2
Q ss_pred cCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEE
Q 025257 20 MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI 99 (255)
Q Consensus 20 ~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~ 99 (255)
.+.++|+||.++++..++|+++..+++.++++.|...|.+.+..+.+++++|++|.|.|.|++|++++|-|+..|+.+++
T Consensus 135 lG~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~Ii 214 (366)
T COG1062 135 LGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRII 214 (366)
T ss_pred eccccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEE
Confidence 33469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcchHHHHHhcCCcEEeCCCCCCc-hHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCC
Q 025257 100 GIDIDPKKFDRAKNFGVTEFVNPKDHDK-PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 178 (255)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~-~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~ 178 (255)
+++.+++|+++++++|+++++|+++ . ++.+.+.++|++++|++|||+|....++.++.++.++ |+.+.+|......
T Consensus 215 AvD~~~~Kl~~A~~fGAT~~vn~~~--~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~-G~~v~iGv~~~~~ 291 (366)
T COG1062 215 AVDINPEKLELAKKFGATHFVNPKE--VDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRG-GTSVIIGVAGAGQ 291 (366)
T ss_pred EEeCCHHHHHHHHhcCCceeecchh--hhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 9999999999999999999999987 6 6999999999989999999999999999999999995 9999999988777
Q ss_pred ccccCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 179 EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 179 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
.++++...+..+.+++|+.+++...+.++..+++++.+|++.+.++++++++|+||+|||+.+.+++.+|-||++
T Consensus 292 ~i~~~~~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~IR~Vi~~ 366 (366)
T COG1062 292 EISTRPFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSIRSVIRF 366 (366)
T ss_pred eeecChHHeeccceEEEEeecCCccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCceeeEEecC
Confidence 788888888889999999999998889999999999999999999999999999999999999999999888864
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=245.55 Aligned_cols=226 Identities=25% Similarity=0.382 Sum_probs=197.2
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
+|++++|++.++++++|+|+++|++++|++. ++++++||. +++.+++|.+|||+|+|++|+.+...|+.+|+.+|+++
T Consensus 123 ~G~la~y~~~~~dfc~KLPd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~ 200 (354)
T KOG0024|consen 123 DGTLAEYYVHPADFCYKLPDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVIT 200 (354)
T ss_pred CCceEEEEEechHheeeCCCCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEe
Confidence 3999999999999999999999999999998 799999985 89999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCC--chHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCC
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHD--KPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 178 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~--~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~ 178 (255)
+-.++|++.++++|++.+.+..... +.+.+.+.+..+. .+|++|||+|....++.++..++.+ |+++++|... .
T Consensus 201 d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~g-Gt~vlvg~g~--~ 277 (354)
T KOG0024|consen 201 DLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSG-GTVVLVGMGA--E 277 (354)
T ss_pred ecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccC-CEEEEeccCC--C
Confidence 9999999999999999876554411 3455566666655 6999999999999899999999997 9999998843 5
Q ss_pred ccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCC--eeEEEEecCC
Q 025257 179 EISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD--CLRCVLKMQD 255 (255)
Q Consensus 179 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~k~vi~~~~ 255 (255)
..+++...... ++.+.|++-+-. .++..+++++++|++++++++++.|++++.++||+.+..+. .+|+++..++
T Consensus 278 ~~~fpi~~v~~kE~~~~g~fry~~---~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~ 354 (354)
T KOG0024|consen 278 EIQFPIIDVALKEVDLRGSFRYCN---GDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE 354 (354)
T ss_pred ccccChhhhhhheeeeeeeeeecc---ccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence 56677666544 999999873322 48999999999999999999999999999999999988766 4599998764
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=261.28 Aligned_cols=225 Identities=41% Similarity=0.680 Sum_probs=198.4
Q ss_pred cceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc
Q 025257 23 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102 (255)
Q Consensus 23 g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~ 102 (255)
|+|+||+.+++.+++++|++++++++++++++++|||+++.+...++++++|||+|+|++|++++|+|+..|+.+|++++
T Consensus 144 G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~ 223 (371)
T cd08281 144 SAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVD 223 (371)
T ss_pred ccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 79999999999999999999999999999999999999988888999999999999999999999999999995699999
Q ss_pred CCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcccc
Q 025257 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 182 (255)
Q Consensus 103 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~ 182 (255)
+++++++.++++|+++++++.+ +++.+.+++.+++++|++|||+|.+..+..++++++++ |+++.+|........++
T Consensus 224 ~~~~r~~~a~~~Ga~~~i~~~~--~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~ 300 (371)
T cd08281 224 LNEDKLALARELGATATVNAGD--PNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSV 300 (371)
T ss_pred CCHHHHHHHHHcCCceEeCCCc--hhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCCCCceeee
Confidence 9999999999999999999887 78888888887668999999999877699999999997 99999997643234456
Q ss_pred Cchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEE
Q 025257 183 RPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCV 250 (255)
Q Consensus 183 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~v 250 (255)
+...++. ++++.|++.+.+...+++.++++++.+|++++.++++++|+|+++++||+.+.+++..|.|
T Consensus 301 ~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~v 369 (371)
T cd08281 301 PALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQV 369 (371)
T ss_pred cHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeee
Confidence 6655555 9999998876554446788999999999998888889999999999999999988877444
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=239.89 Aligned_cols=244 Identities=19% Similarity=0.232 Sum_probs=208.7
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
+|.+++++.+ ||+|.-....|.|+|+..+|...++++|+.+++++||++...++|||..+.+...++||++||++.+ |
T Consensus 79 vG~gvtdrkv-GDrVayl~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAG 157 (336)
T KOG1197|consen 79 VGEGVTDRKV-GDRVAYLNPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAG 157 (336)
T ss_pred ecCCcccccc-ccEEEEeccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccc
Confidence 5889999999 9999877788999999999999999999999999999999999999999999999999999999975 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALE 159 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~ 159 (255)
++|++++|+++..|+ .+|+++.+.+|++.+++.|+++.|+++. +++.+++.++|+| |+|.++|.+|... +..++.
T Consensus 158 GVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~h~I~y~~--eD~v~~V~kiTngKGVd~vyDsvG~dt-~~~sl~ 233 (336)
T KOG1197|consen 158 GVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAEHPIDYST--EDYVDEVKKITNGKGVDAVYDSVGKDT-FAKSLA 233 (336)
T ss_pred cHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCcceeeccc--hhHHHHHHhccCCCCceeeeccccchh-hHHHHH
Confidence 999999999999999 9999999999999999999999999998 9999999999988 9999999999998 999999
Q ss_pred HhccCCceEEEEccCCCCCccccCchhhcc-CcEEE-EeeeCCCCccC----cHHHHHHHHHcCCCCCCCcceeeeecch
Q 025257 160 CCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWK-GTAFGGFKSRS----QVPWLVDKYMKKEIKVDEYVTHNMTLGE 233 (255)
Q Consensus 160 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~-g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (255)
+|++. |+++.+|..++. .-+++...+.- .+++. .+.++....+. ...+++.++.+|.+++. |.++|||++
T Consensus 234 ~Lk~~-G~mVSfG~asgl-~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~--I~~~ypls~ 309 (336)
T KOG1197|consen 234 ALKPM-GKMVSFGNASGL-IDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIH--IDHVYPLSK 309 (336)
T ss_pred HhccC-ceEEEeccccCC-CCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCcccee--eeeecchHH
Confidence 99997 999999997543 22333333222 33332 22223222222 34577888889996554 889999999
Q ss_pred HHHHHHHhhCCCee-EEEEecC
Q 025257 234 INEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 234 ~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
+.+|++.++++... |+++.+.
T Consensus 310 vadA~~diesrktvGkvlLlp~ 331 (336)
T KOG1197|consen 310 VADAHADIESRKTVGKVLLLPG 331 (336)
T ss_pred HHHHHHHHHhhhccceEEEeCC
Confidence 99999999988766 9998764
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=258.45 Aligned_cols=231 Identities=67% Similarity=1.168 Sum_probs=195.0
Q ss_pred cceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc
Q 025257 23 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102 (255)
Q Consensus 23 g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~ 102 (255)
|+|+||+++|+++++++|+++++++++++++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++
T Consensus 138 G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~ 217 (368)
T TIGR02818 138 STFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAID 217 (368)
T ss_pred ccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 69999999999999999999999999999999999999988888999999999999999999999999999986799999
Q ss_pred CCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcccc
Q 025257 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 182 (255)
Q Consensus 103 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~ 182 (255)
+++++++.++++|++.++++.+.+.++.+.+++.+++++|++|||+|.+..+...++++++++|+++.+|........++
T Consensus 218 ~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~ 297 (368)
T TIGR02818 218 INPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEIST 297 (368)
T ss_pred CCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccc
Confidence 99999999999999999987642245677787777668999999999877789999999873399999998543233344
Q ss_pred CchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 183 RPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
+...+..+..+.++..+......++.++++++.+++++++++++++|||+++++|++.+.+++..|++|.+
T Consensus 298 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~~v~~ 368 (368)
T TIGR02818 298 RPFQLVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRTVIHY 368 (368)
T ss_pred cHHHHhccceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeEEeeC
Confidence 44444445557777654433345789999999999998888899999999999999999887777999875
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=257.91 Aligned_cols=228 Identities=36% Similarity=0.589 Sum_probs=199.5
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||+.+++.+++++|+++++++++++++++.|||+++.+...++++++|||+|+|++|++++|+|+..|+.+|+++
T Consensus 128 ~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~ 207 (358)
T TIGR03451 128 IGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAV 207 (358)
T ss_pred cccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 58999999999999999999999999999999999999988888899999999999999999999999999999459999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 180 (255)
+++++++++++++|++.++++.+ +++.+.+.+.+++ ++|++|||+|++..+..++++++++ |+++.+|........
T Consensus 208 ~~~~~~~~~~~~~Ga~~~i~~~~--~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~~ 284 (358)
T TIGR03451 208 DIDDRKLEWAREFGATHTVNSSG--TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMTL 284 (358)
T ss_pred cCCHHHHHHHHHcCCceEEcCCC--cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCcee
Confidence 99999999999999999999887 7888889888887 8999999999876699999999997 999999986432334
Q ss_pred ccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEe
Q 025257 181 STRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 252 (255)
Q Consensus 181 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~ 252 (255)
+++...++. +.++.+++.+.....++++++++++.+|++++.++++++||++++++|++.+.+++..|+++.
T Consensus 285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~ 357 (358)
T TIGR03451 285 ELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVE 357 (358)
T ss_pred eccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEe
Confidence 555544544 889988865443344678999999999999888888999999999999999988877788875
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=257.31 Aligned_cols=232 Identities=51% Similarity=0.985 Sum_probs=198.6
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
+|+|+||++++...++++|+++++++++++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus 150 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~ 229 (381)
T PLN02740 150 TSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGV 229 (381)
T ss_pred CccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEE
Confidence 48999999999999999999999999999999999999988788899999999999999999999999999998569999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~ 181 (255)
++++++.+.++++|++.++++.+.+.++.+.+++.+++++|++||++|.+..+..+++++++++|+++.+|.......++
T Consensus 230 ~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~ 309 (381)
T PLN02740 230 DINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLP 309 (381)
T ss_pred cCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceec
Confidence 99999999999999999998775113477788887766899999999987779999999988229999999864322334
Q ss_pred cCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 182 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
++...++++.++.|+..+.+....++.++++++.++.+++.+.++++|+|+++++|++.+.+++.+|++|+.
T Consensus 310 ~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~~~~~ 381 (381)
T PLN02740 310 LHPMELFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRCLLHL 381 (381)
T ss_pred ccHHHHhcCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeEEEeC
Confidence 444434458899998876654445789999999999988888889999999999999999888778999863
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=254.76 Aligned_cols=231 Identities=79% Similarity=1.266 Sum_probs=196.3
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||+.+++.+++++|+++++++++++++++.|||+++.+...++++++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus 138 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~ 217 (368)
T cd08300 138 TSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGI 217 (368)
T ss_pred cccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 36899999999999999999999999999999999999998788899999999999999999999999999999569999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~ 181 (255)
++++++.+.++++|+++++++.+.++++.+.+.+.+++++|+|||++|++..+..+++++++++|+++.+|........+
T Consensus 218 ~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~ 297 (368)
T cd08300 218 DINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEIS 297 (368)
T ss_pred eCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccc
Confidence 99999999999999999998875112577888888776899999999987669999999987339999999764322333
Q ss_pred cCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEe
Q 025257 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 252 (255)
Q Consensus 182 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~ 252 (255)
++...+....++.++..+.+....++.++++++.++++++.++++++|+|+++++||+.+.+++..|++++
T Consensus 298 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~~~ 368 (368)
T cd08300 298 TRPFQLVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTVVK 368 (368)
T ss_pred cCHHHHhhcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceeeeC
Confidence 33433444557777776666555788999999999999887888999999999999999988877799874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=254.41 Aligned_cols=231 Identities=54% Similarity=1.017 Sum_probs=196.3
Q ss_pred cceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc
Q 025257 23 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102 (255)
Q Consensus 23 g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~ 102 (255)
|+|+||+.+++..++++|+++++++++++++++.++|+++.+..++++|++|||+|+|++|++++|+++.+|+..|++++
T Consensus 146 G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~ 225 (378)
T PLN02827 146 SSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVD 225 (378)
T ss_pred ccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 89999999999999999999999999999989899998877778899999999999999999999999999984588888
Q ss_pred CCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcccc
Q 025257 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 182 (255)
Q Consensus 103 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~ 182 (255)
+++++.++++++|+++++++++.++++.+.+++.+++++|++||++|.+..+...++.+++++|+++.+|..... ..+
T Consensus 226 ~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~--~~~ 303 (378)
T PLN02827 226 INPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK--PEV 303 (378)
T ss_pred CCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC--ccc
Confidence 899999999999999999877412367777887776689999999998766899999999932999999986432 233
Q ss_pred Cc--hhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEecCC
Q 025257 183 RP--FQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQD 255 (255)
Q Consensus 183 ~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~~ 255 (255)
+. ..++++.++.|+....+....++++++++++++++++.++++++|+|+++++|++.+.+++.+|+||.+.+
T Consensus 304 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~~~ 378 (378)
T PLN02827 304 SAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHMPK 378 (378)
T ss_pred cccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEecC
Confidence 22 23445999999887655444578899999999998887788999999999999999988877899998753
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=250.96 Aligned_cols=230 Identities=61% Similarity=1.132 Sum_probs=198.1
Q ss_pred cceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc
Q 025257 23 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102 (255)
Q Consensus 23 g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~ 102 (255)
|+|+||++++..+++++|+++++++++++++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++
T Consensus 140 G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~ 219 (369)
T cd08301 140 STFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVD 219 (369)
T ss_pred ccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 78999999999999999999999999999999999999888888999999999999999999999999999985799999
Q ss_pred CCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcccc
Q 025257 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 182 (255)
Q Consensus 103 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~ 182 (255)
+++++.+.++++|++.++++.+.++++.+.+++.+++++|++||++|.+..+...++++++++|+++.+|.......+++
T Consensus 220 ~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~ 299 (369)
T cd08301 220 LNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFST 299 (369)
T ss_pred CCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCccccc
Confidence 99999999999999989887642235777777777668999999999887689999999992289999998653334445
Q ss_pred CchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEe
Q 025257 183 RPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 252 (255)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~ 252 (255)
+...+++++++.|+..+.+..+.+++++++++.++.+++.+.++++|||+++++|++.+.+++.+|+++.
T Consensus 300 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~ 369 (369)
T cd08301 300 HPMNLLNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRCILH 369 (369)
T ss_pred CHHHHhcCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeEEeC
Confidence 5444556899999887766555678999999999998887788899999999999999998888898873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=248.99 Aligned_cols=221 Identities=27% Similarity=0.423 Sum_probs=191.7
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
+|+|+||+.+++.+++++|+++++++++++++++.|||+++ ....++++++|||+|+|++|++++|+++.+|+++|+++
T Consensus 116 ~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~ 194 (339)
T cd08239 116 DGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGV 194 (339)
T ss_pred CCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 58999999999999999999999999999999999999987 56789999999999999999999999999999339999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 180 (255)
++++++.+.++++|++.++++++ .+ .+.+.+.+++ ++|++|||+|++..+..++++++++ |+++.+|.... .
T Consensus 195 ~~~~~~~~~~~~~ga~~~i~~~~--~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~-- 267 (339)
T cd08239 195 DPSPERLELAKALGADFVINSGQ--DD-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGGE-L-- 267 (339)
T ss_pred CCCHHHHHHHHHhCCCEEEcCCc--ch-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCCC-c--
Confidence 99999999999999999999876 66 7778888777 8999999999988678999999997 99999997532 2
Q ss_pred ccCc-hhhc-cCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 181 STRP-FQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 181 ~~~~-~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
+++. ..++ +++++.|++.... ++++++++++.++.+.+.+.++++|+++++++|++.+.++...|+||++
T Consensus 268 ~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~ 339 (339)
T cd08239 268 TIEVSNDLIRKQRTLIGSWYFSV---PDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF 339 (339)
T ss_pred ccCcHHHHHhCCCEEEEEecCCH---HHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence 2222 2333 4899999875432 5789999999999988888889999999999999998887656999875
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=248.06 Aligned_cols=230 Identities=62% Similarity=1.099 Sum_probs=196.2
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||+++++++++++|+++++++++++++++.|||+++.+..+++++++|+|+|+|++|++++|+++.+|+.+|+++
T Consensus 136 ~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~ 215 (365)
T cd08277 136 TSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGV 215 (365)
T ss_pred cccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 47999999999999999999999999999999999999988888899999999999999999999999999998569999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~ 181 (255)
++++++++.++++|+++++++.+.+.++.+.+++.+++++|++|||+|.+..+..+++++++++|+++.+|.... ...+
T Consensus 216 ~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~ 294 (365)
T cd08277 216 DINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPG-AELS 294 (365)
T ss_pred eCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCc-cccc
Confidence 999999999999999999987652234567777776668999999999877689999999872399999998642 2334
Q ss_pred cCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEe
Q 025257 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 252 (255)
Q Consensus 182 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~ 252 (255)
++...+..+.++.|+..+++....++.++++++.++.+++.++++++|+|+++++|++.+.+++.+|++++
T Consensus 295 ~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~ 365 (365)
T cd08277 295 IRPFQLILGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT 365 (365)
T ss_pred cCHhHHhhCCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence 44444545888998887766544678999999999998888888999999999999999888776799874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=242.02 Aligned_cols=219 Identities=20% Similarity=0.287 Sum_probs=183.2
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
+|+|+||+++++..++++|++++++++++. .++++||+++ ......++++|+|+|+|++|++++|+++.+|+++|+++
T Consensus 123 ~G~~aey~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~ 200 (343)
T PRK09880 123 DGGFTRYKVVDTAQCIPYPEKADEKVMAFA-EPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCA 200 (343)
T ss_pred CCceeeeEEechHHeEECCCCCCHHHHHhh-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 599999999999999999999998876644 4788999987 44566789999999999999999999999999668999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~ 181 (255)
++++++++.++++|+++++++++ +++.+.. +. .+++|++|||+|.+..++.++++++++ |+++.+|.... ..+
T Consensus 201 ~~~~~~~~~a~~lGa~~vi~~~~--~~~~~~~-~~-~g~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~ 273 (343)
T PRK09880 201 DVSPRSLSLAREMGADKLVNPQN--DDLDHYK-AE-KGYFDVSFEVSGHPSSINTCLEVTRAK-GVMVQVGMGGA--PPE 273 (343)
T ss_pred eCCHHHHHHHHHcCCcEEecCCc--ccHHHHh-cc-CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC--CCc
Confidence 99999999999999999999876 5554333 22 236999999999876689999999997 99999997432 334
Q ss_pred cCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 182 TRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 182 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++...++. ++++.|+... .+++++++++++++++++.++++++|+++++++|++.+.+++.. |++|.+
T Consensus 274 ~~~~~~~~k~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 343 (343)
T PRK09880 274 FPMMTLIVKEISLKGSFRF----TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF 343 (343)
T ss_pred cCHHHHHhCCcEEEEEeec----cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence 55555544 8899887632 35799999999999998878888999999999999999877654 999874
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=226.34 Aligned_cols=237 Identities=27% Similarity=0.404 Sum_probs=201.1
Q ss_pred CCCCCccccCCcccccc--------------cCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCC
Q 025257 3 NDRKSRFSINGKPIYHF--------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKV 68 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~--------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~ 68 (255)
.|..|++|..|+..++. ..+|+||+|+++++.++.++|++++++.||.+.|+..|+|..| ....+
T Consensus 101 sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~ 179 (360)
T KOG0023|consen 101 SCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGL 179 (360)
T ss_pred cccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehh-HHcCC
Confidence 45666666666654432 1236699999999999999999999999999999999999987 77888
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHhcCCcEEeCCC-CCCchHHHHHHhhcCCCccEEEe
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRAKNFGVTEFVNPK-DHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~~~~~~~g~~~vi~~~-~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.||+++.|.|+|++|++++|+|+++|. +|++++++. +|.+.++.+|++..++.. + ++..+++.+.+++++|-|.+
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LGAd~fv~~~~d--~d~~~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLGADVFVDSTED--PDIMKAIMKTTDGGIDTVSN 256 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcCcceeEEecCC--HHHHHHHHHhhcCcceeeee
Confidence 899999999997799999999999999 999999988 555556889999888877 5 89999999988777888776
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcc
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYV 225 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (255)
. ....++.++++++.+ |++|++|.... +..++..++.. .+++.|+.+++. ++.++++++..++.+.+. +
T Consensus 257 ~--a~~~~~~~~~~lk~~-Gt~V~vg~p~~--~~~~~~~~lil~~~~I~GS~vG~~---ket~E~Ldf~a~~~ik~~--I 326 (360)
T KOG0023|consen 257 L--AEHALEPLLGLLKVN-GTLVLVGLPEK--PLKLDTFPLILGRKSIKGSIVGSR---KETQEALDFVARGLIKSP--I 326 (360)
T ss_pred c--cccchHHHHHHhhcC-CEEEEEeCcCC--cccccchhhhcccEEEEeeccccH---HHHHHHHHHHHcCCCcCc--e
Confidence 6 445589999999997 99999999643 66777777655 999999998866 789999999999997654 4
Q ss_pred eeeeecchHHHHHHHhhCCCee-EEEEecC
Q 025257 226 THNMTLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
+..+++++++|++.+.+++.. |.||.+.
T Consensus 327 -E~v~~~~v~~a~erm~kgdV~yRfVvD~s 355 (360)
T KOG0023|consen 327 -ELVKLSEVNEAYERMEKGDVRYRFVVDVS 355 (360)
T ss_pred -EEEehhHHHHHHHHHHhcCeeEEEEEEcc
Confidence 689999999999999999877 9999864
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=239.23 Aligned_cols=246 Identities=17% Similarity=0.255 Sum_probs=200.5
Q ss_pred CCCCCCccccCCccccccc---------------------------CccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 2 MNDRKSRFSINGKPIYHFM---------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~---------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
.|+++.+|++ ||+|+.+. ..|+|+||+.+++..++++|+++++++++.++ +
T Consensus 68 vG~~v~~~~v-Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~ 145 (347)
T PRK10309 68 VGSGVDDLHP-GDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-P 145 (347)
T ss_pred eCCCCCCCCC-CCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-H
Confidence 3567777888 88887542 25899999999999999999999999998875 5
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
++++++++ +...++++++|+|+|+|++|++++|+|+.+|+..|+++++++++.+.++++|+++++++++ .. .+.+.
T Consensus 146 ~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~-~~~~~ 221 (347)
T PRK10309 146 ITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE--MS-APQIQ 221 (347)
T ss_pred HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc--cC-HHHHH
Confidence 66788874 6778899999999999999999999999999944788999999999999999999998875 45 55677
Q ss_pred hhcCC-Ccc-EEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcccc-Cchhhc-cCcEEEEeeeCCCC--ccCcHH
Q 025257 135 DLTDG-GVD-YSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST-RPFQLV-TGRVWKGTAFGGFK--SRSQVP 208 (255)
Q Consensus 135 ~~~~~-~~d-~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~~-~~~~~~g~~~~~~~--~~~~~~ 208 (255)
+.+.+ ++| ++|||+|.+..+..++++++++ |+++.+|.......++. +...++ +++++.|+..+... ..++++
T Consensus 222 ~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 300 (347)
T PRK10309 222 SVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWE 300 (347)
T ss_pred HHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcchhHHH
Confidence 77766 898 9999999887789999999997 99999997643211111 122344 48999998764321 235788
Q ss_pred HHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecC
Q 025257 209 WLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
++++++++|.++++++++++|+|+++++|++.+.+++.. |+++++.
T Consensus 301 ~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~ 347 (347)
T PRK10309 301 TASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQIP 347 (347)
T ss_pred HHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeCC
Confidence 999999999998888899999999999999999887755 9999763
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=240.10 Aligned_cols=242 Identities=20% Similarity=0.296 Sum_probs=198.2
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCc--eEE--cCCCCCcc-cccccccchhhhhhHHHhhcCCCCCCEEEE
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS--VAK--IDPQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 76 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~--~~~--~p~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI 76 (255)
+|+++.+|++ ||+|+++ |+|+||..++... +++ +|++++++ ++|+++++++|||+++....++++|++|||
T Consensus 89 vg~~v~~~~~-Gd~V~~~---~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV 164 (348)
T PLN03154 89 VDSDDPNFKP-GDLISGI---TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFV 164 (348)
T ss_pred EecCCCCCCC-CCEEEec---CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4567788999 9999864 6899999999753 544 48999986 688899999999999888889999999999
Q ss_pred EcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHH
Q 025257 77 FGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM 154 (255)
Q Consensus 77 ~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~ 154 (255)
+|+ |++|++++|+|+.+|+ +|+++++++++.++++ ++|++.++++++ ..++.+.+++.+++++|++|||+|+.. +
T Consensus 165 ~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~-~~~~~~~i~~~~~~gvD~v~d~vG~~~-~ 241 (348)
T PLN03154 165 SAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNYKE-EPDLDAALKRYFPEGIDIYFDNVGGDM-L 241 (348)
T ss_pred ecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEECCC-cccHHHHHHHHCCCCcEEEEECCCHHH-H
Confidence 998 9999999999999999 9999999999999997 799999999874 136778888777558999999999875 9
Q ss_pred HHHHHHhccCCceEEEEccCCCCCccc-----cCchhhc-cCcEEEEeeeCCCC--ccCcHHHHHHHHHcCCCCCCCcce
Q 025257 155 RAALECCHKGWGTSVIVGVAASGQEIS-----TRPFQLV-TGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEYVT 226 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~~~~~-----~~~~~~~-~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 226 (255)
...+++++++ |+++.+|..... ..+ .+...++ +++++.|+....+. ..+.++++++++++|++++ .+.
T Consensus 242 ~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~--~~~ 317 (348)
T PLN03154 242 DAALLNMKIH-GRIAVCGMVSLN-SLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVY--IED 317 (348)
T ss_pred HHHHHHhccC-CEEEEECccccC-CCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccC--cee
Confidence 9999999997 999999975432 111 1333344 48889888754332 1245778999999999764 356
Q ss_pred eeeecchHHHHHHHhhCCCee-EEEEecC
Q 025257 227 HNMTLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
.+|+|+++++|++.+.+++.. |+||++.
T Consensus 318 ~~~~L~~~~~A~~~l~~g~~~GKvVl~~~ 346 (348)
T PLN03154 318 MSEGLESAPAALVGLFSGKNVGKQVIRVA 346 (348)
T ss_pred cccCHHHHHHHHHHHHcCCCCceEEEEec
Confidence 789999999999999988876 9999875
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=231.44 Aligned_cols=223 Identities=28% Similarity=0.418 Sum_probs=189.3
Q ss_pred ccceeeEEEEcCCceEEcCC------CCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC
Q 025257 22 TSTFSQYTVVHDVSVAKIDP------QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 95 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~------~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~ 95 (255)
+|+|+||+.++.++++++|+ ++++++++.+++++.|||+++. ...++++++|+|+|+|++|++++|+|+..|+
T Consensus 113 ~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~ 191 (349)
T TIGR03201 113 QGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA 191 (349)
T ss_pred CCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 59999999999999999998 8999999999999999999874 5789999999999999999999999999999
Q ss_pred CeEEEEcCCcchHHHHHhcCCcEEeCCCCCC-chHHHHHHhhcCC-Ccc----EEEecCCcHHHHHHHHHHhccCCceEE
Q 025257 96 SRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD-KPIQQVLVDLTDG-GVD----YSFECIGNVSVMRAALECCHKGWGTSV 169 (255)
Q Consensus 96 ~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~-~~~~~~i~~~~~~-~~d----~v~d~~g~~~~~~~~~~~l~~~~G~~v 169 (255)
+|++++++++++++++++|+++++++.+.+ +++.+.+++.+++ ++| ++|||+|.+..++.++++++++ |+++
T Consensus 192 -~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv 269 (349)
T TIGR03201 192 -AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLV 269 (349)
T ss_pred -eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcC-CeEE
Confidence 899999999999999999999999876511 2577778888877 776 8999999988788899999997 9999
Q ss_pred EEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-
Q 025257 170 IVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL- 247 (255)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 247 (255)
.+|.... ..+++...++. +.++.|++... ..+++++++++++|++++.+.+. +|||+++++||+.+.+++..
T Consensus 270 ~~G~~~~--~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~~~~ 343 (349)
T TIGR03201 270 VVGYTMA--KTEYRLSNLMAFHARALGNWGCP---PDRYPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHKLKR 343 (349)
T ss_pred EECcCCC--CcccCHHHHhhcccEEEEEecCC---HHHHHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCCccc
Confidence 9998643 23444455544 77888876432 35799999999999988776664 79999999999999888766
Q ss_pred EEEEec
Q 025257 248 RCVLKM 253 (255)
Q Consensus 248 k~vi~~ 253 (255)
|+++++
T Consensus 344 k~~~~~ 349 (349)
T TIGR03201 344 RAILTP 349 (349)
T ss_pred eEEecC
Confidence 988753
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=232.35 Aligned_cols=216 Identities=23% Similarity=0.338 Sum_probs=178.8
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
+|+|+||+++|++.++++|+++++++++++++++.|||+++.....++++++|||.|+|++|++++|+|+.+|+ +|+++
T Consensus 135 ~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~ 213 (360)
T PLN02586 135 YGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVI 213 (360)
T ss_pred CCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence 58999999999999999999999999999999999999988666778899999999999999999999999999 88888
Q ss_pred cCCcchH-HHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcc
Q 025257 102 DIDPKKF-DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180 (255)
Q Consensus 102 ~~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 180 (255)
+.+++++ +.++++|+++++++.+ . +.+++.++ ++|++||++|.+..++..+++++++ |+++.+|.... ..
T Consensus 214 ~~~~~~~~~~~~~~Ga~~vi~~~~--~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~vG~~~~--~~ 284 (360)
T PLN02586 214 SSSSNKEDEAINRLGADSFLVSTD--P---EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVN-GKLITLGLPEK--PL 284 (360)
T ss_pred eCCcchhhhHHHhCCCcEEEcCCC--H---HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCC-cEEEEeCCCCC--CC
Confidence 7776664 4557899999998764 3 24444444 6999999999876689999999997 99999997532 34
Q ss_pred ccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 181 STRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 181 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
+++...++. +..+.|+..+. ..+++++++++.+|++++. + ++|+|+++++|++.+.+++.. |+|+++
T Consensus 285 ~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~li~~g~i~~~--~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 353 (360)
T PLN02586 285 ELPIFPLVLGRKLVGGSDIGG---IKETQEMLDFCAKHNITAD--I-ELIRMDEINTAMERLAKSDVRYRFVIDV 353 (360)
T ss_pred ccCHHHHHhCCeEEEEcCcCC---HHHHHHHHHHHHhCCCCCc--E-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 455555544 77777766442 2578999999999997653 4 589999999999999888765 999876
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=231.81 Aligned_cols=241 Identities=22% Similarity=0.308 Sum_probs=195.1
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcC-CceEEcC-CCCCcc-cccccccchhhhhhHHHhhcCCCCCCEEEEEcC
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VSVAKID-PQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL 79 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~-~~~~~~p-~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~ 79 (255)
+.++.+|.+ ||+|+++ |+|+||+++++ ..++++| +.++++ +++++++++.|||+++.+..++++|++|||+|+
T Consensus 85 ~~~v~~~~v-Gd~V~~~---g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga 160 (338)
T cd08295 85 DSGNPDFKV-GDLVWGF---TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAA 160 (338)
T ss_pred ecCCCCCCC-CCEEEec---CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecC
Confidence 456667888 9999865 68999999999 7999995 678887 788899999999999888899999999999997
Q ss_pred -ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHH
Q 025257 80 -GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAA 157 (255)
Q Consensus 80 -g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~ 157 (255)
|++|++++|+|+.+|+ +|+++++++++.+++++ +|+++++++.+ +.++.+.+++.+++++|++||++|+.. +...
T Consensus 161 ~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~i~~~~~~gvd~v~d~~g~~~-~~~~ 237 (338)
T cd08295 161 SGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKE-EPDLDAALKRYFPNGIDIYFDNVGGKM-LDAV 237 (338)
T ss_pred ccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCC-cccHHHHHHHhCCCCcEEEEECCCHHH-HHHH
Confidence 9999999999999999 99999999999999988 99999998653 147778888776558999999999865 9999
Q ss_pred HHHhccCCceEEEEccCCCCCcc----ccCchhhc-cCcEEEEeeeCCCCc--cCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 158 LECCHKGWGTSVIVGVAASGQEI----STRPFQLV-TGRVWKGTAFGGFKS--RSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 158 ~~~l~~~~G~~v~~g~~~~~~~~----~~~~~~~~-~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
+++++++ |+++.+|........ ..+...+. ++.++.++....+.. .+.++++++++.+|++++. +...|+
T Consensus 238 ~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~ 314 (338)
T cd08295 238 LLNMNLH-GRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--EDIADG 314 (338)
T ss_pred HHHhccC-cEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--eecccC
Confidence 9999997 999999875321110 11223333 377888765543321 2346788999999997654 445799
Q ss_pred cchHHHHHHHhhCCCee-EEEEec
Q 025257 231 LGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++++|++.+.+++.. |+|+++
T Consensus 315 l~~~~~A~~~~~~~~~~GkvVl~~ 338 (338)
T cd08295 315 LESAPEAFVGLFTGSNIGKQVVKV 338 (338)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEC
Confidence 99999999999887766 999864
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=230.35 Aligned_cols=226 Identities=27% Similarity=0.414 Sum_probs=189.1
Q ss_pred ccceeeEEEEcCC-ceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEE
Q 025257 22 TSTFSQYTVVHDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 100 (255)
Q Consensus 22 ~g~~ae~~~v~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~ 100 (255)
.|+|+||+.++++ +++++|++++.++++++++++.|||+++......+++++|||+|+|++|++++|+|+.+|+++|++
T Consensus 128 ~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~ 207 (361)
T cd08231 128 SGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIV 207 (361)
T ss_pred CcccceEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 4899999999996 799999999999999998999999999877777779999999998999999999999999878999
Q ss_pred EcCCcchHHHHHhcCCcEEeCCCCCCch---HHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCC
Q 025257 101 IDIDPKKFDRAKNFGVTEFVNPKDHDKP---IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 176 (255)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~---~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~ 176 (255)
+++++++.++++++|++.++++++ .+ +.+.+.+.+++ ++|++|||+|+...+...+++++++ |+++.+|....
T Consensus 208 ~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~ 284 (361)
T cd08231 208 IDGSPERLELAREFGADATIDIDE--LPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAP 284 (361)
T ss_pred EcCCHHHHHHHHHcCCCeEEcCcc--cccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CEEEEEcCCCC
Confidence 999999999999999998888765 33 33567788877 8999999999866689999999997 99999997643
Q ss_pred CCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcC--CCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 177 GQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKK--EIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 177 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
....+++...++. +.++.++.... .++++++++++.++ .+.+.+.+.++|+++++++|++.+.++..+|++|++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~~k~vi~~ 361 (361)
T cd08231 285 AGTVPLDPERIVRKNLTIIGVHNYD---PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTALKVVIDP 361 (361)
T ss_pred CCccccCHHHHhhcccEEEEcccCC---chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCceEEEeCC
Confidence 2333444443344 88888876432 35789999999888 556677778899999999999999887767999864
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=229.29 Aligned_cols=239 Identities=25% Similarity=0.415 Sum_probs=202.6
Q ss_pred CCCCCccccCCcccccc---------------------------c-CccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 3 NDRKSRFSINGKPIYHF---------------------------M-GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~---------------------------~-~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
|.++.++++ ||+|+.. . .+|+|+||+.++...++++|+++++++++.+ .+
T Consensus 80 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~~ 157 (351)
T cd08233 80 GSGVTGFKV-GDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-EP 157 (351)
T ss_pred CCCCCCCCC-CCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-cH
Confidence 556777888 8888742 1 1599999999999999999999999998776 57
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
+.|||+++ ...+++++++|+|+|+|++|++++|+++.+|+++|+++++++++.+.++++|++.++++++ .++.+.++
T Consensus 158 ~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~--~~~~~~l~ 234 (351)
T cd08233 158 LAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTE--VDVVAEVR 234 (351)
T ss_pred HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCc--cCHHHHHH
Confidence 88999987 7889999999999999999999999999999867889998999999999999999999887 88989998
Q ss_pred hhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHH
Q 025257 135 DLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVD 212 (255)
Q Consensus 135 ~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~ 212 (255)
+.+++ ++|+++|++|.+..++..+++++++ |+++.+|... ...+++...+.. +.++.++.... .++++++++
T Consensus 235 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~ 308 (351)
T cd08233 235 KLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWE--KPISFNPNDLVLKEKTLTGSICYT---REDFEEVID 308 (351)
T ss_pred HHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccCC--CCCccCHHHHHhhCcEEEEEeccC---cchHHHHHH
Confidence 88877 7999999999766689999999997 9999999864 234555554444 88998886432 368999999
Q ss_pred HHHcCCCCCCCcceeeeecchH-HHHHHHhhCCCe--eEEEEe
Q 025257 213 KYMKKEIKVDEYVTHNMTLGEI-NEAFRYMHGGDC--LRCVLK 252 (255)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~--~k~vi~ 252 (255)
+++++++++.+.+.++|+++++ ++|++.+.+++. +|+||.
T Consensus 309 ~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~ 351 (351)
T cd08233 309 LLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS 351 (351)
T ss_pred HHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence 9999998877778889999996 799998877764 599873
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=229.65 Aligned_cols=232 Identities=24% Similarity=0.368 Sum_probs=185.2
Q ss_pred CcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhc------CCCCCCEEEEEcC-ChHHHH
Q 025257 13 GKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA------KVEPGSIVAVFGL-GTVGLA 85 (255)
Q Consensus 13 g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~------~~~~~~~vlI~G~-g~vG~~ 85 (255)
|+.+..+...|+|+||+++|...++++|++++++++|++|.++.|||.++.... ++++|++|||+|+ |++|++
T Consensus 94 g~~~~~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~ 173 (347)
T KOG1198|consen 94 GDAVVAFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTA 173 (347)
T ss_pred eeEEeeccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHH
Confidence 666666667799999999999999999999999999999999999999999999 9999999999987 899999
Q ss_pred HHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCC
Q 025257 86 VAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGW 165 (255)
Q Consensus 86 a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~ 165 (255)
++|+|++.|+ ..++++.++++.++++++|+++++|+++ +++.+.+.+.++++||+||||+|++. ......++..+
T Consensus 174 aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy~~--~~~~e~~kk~~~~~~DvVlD~vg~~~-~~~~~~~l~~~- 248 (347)
T KOG1198|consen 174 AIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDYKD--ENVVELIKKYTGKGVDVVLDCVGGST-LTKSLSCLLKG- 248 (347)
T ss_pred HHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecCCC--HHHHHHHHhhcCCCccEEEECCCCCc-cccchhhhccC-
Confidence 9999999996 5666666899999999999999999998 99999999998449999999999987 78888888885
Q ss_pred ceEEEEccCCCCCccccCch-------------hhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 166 GTSVIVGVAASGQEISTRPF-------------QLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 166 G~~v~~g~~~~~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
|+...++.... ...+.... ...++..+.... .....+.++.+.+++++++ +++.+.++||++
T Consensus 249 g~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~ie~gk--ikp~i~~~~p~~ 323 (347)
T KOG1198|consen 249 GGGAYIGLVGD-ELANYKLDDLWQSANGIKLYSLGLKGVNYRWLY--FVPSAEYLKALVELIEKGK--IKPVIDSVYPFS 323 (347)
T ss_pred CceEEEEeccc-cccccccccchhhhhhhhheeeeeeccceeeee--ecCCHHHHHHHHHHHHcCc--ccCCcceeeeHH
Confidence 75445544321 11111111 000111111111 1123467889999999996 566688999999
Q ss_pred hHHHHHHHhhCCCee-EEEEecC
Q 025257 233 EINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 233 ~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
++.+|++.+.++... |+++.+.
T Consensus 324 ~~~ea~~~~~~~~~~GK~vl~~~ 346 (347)
T KOG1198|consen 324 QAKEAFEKLEKSHATGKVVLEKD 346 (347)
T ss_pred HHHHHHHHHhhcCCcceEEEEec
Confidence 999999999887665 9999875
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=230.57 Aligned_cols=216 Identities=22% Similarity=0.308 Sum_probs=179.4
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 100 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~-~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~ 100 (255)
+|+|+||+++|++.++++|++++++++++++++..|||+++..... .+++++|+|.|+|++|++++|+|+.+|+ +|++
T Consensus 129 ~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~ 207 (375)
T PLN02178 129 QGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTV 207 (375)
T ss_pred CCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEE
Confidence 5899999999999999999999999999999999999998754433 4689999999999999999999999999 8999
Q ss_pred EcCCcch-HHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCc
Q 025257 101 IDIDPKK-FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 179 (255)
Q Consensus 101 ~~~~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 179 (255)
+++++++ .+.++++|+++++++.+ . +.+.+.++ ++|++|||+|.+..+..++++++++ |+++.+|... ..
T Consensus 208 ~~~~~~~~~~~a~~lGa~~~i~~~~--~---~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~vG~~~--~~ 278 (375)
T PLN02178 208 ISRSSEKEREAIDRLGADSFLVTTD--S---QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVS-GKLVALGLPE--KP 278 (375)
T ss_pred EeCChHHhHHHHHhCCCcEEEcCcC--H---HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCC-CEEEEEccCC--CC
Confidence 8877554 67788999999998764 3 34555544 6999999999986689999999997 9999999753 23
Q ss_pred cccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 180 ISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 180 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
.+++...++. +.++.|+..+.. +++.++++++.+|++++. + ++|||+++++|++.+.+++.. |+|+.+
T Consensus 279 ~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 348 (375)
T PLN02178 279 LDLPIFPLVLGRKMVGGSQIGGM---KETQEMLEFCAKHKIVSD--I-ELIKMSDINSAMDRLAKSDVRYRFVIDV 348 (375)
T ss_pred CccCHHHHHhCCeEEEEeCccCH---HHHHHHHHHHHhCCCccc--E-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence 4455555544 888988865432 578999999999997654 4 679999999999999888765 999876
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=225.90 Aligned_cols=245 Identities=25% Similarity=0.345 Sum_probs=198.7
Q ss_pred CCCCCCccccCCcccccc-------c-----CccceeeEEEEcCCceEE-cCCCCCcccccccccchhhhhhHHHhhcCC
Q 025257 2 MNDRKSRFSINGKPIYHF-------M-----GTSTFSQYTVVHDVSVAK-IDPQAPLDKVCLLGCGVPTGLGAVWNTAKV 68 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~-------~-----~~g~~ae~~~v~~~~~~~-~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~ 68 (255)
..|+.|.+|..|....+- . .+|+++||+++|.+++++ +|++++ .+++++..++++++++.......
T Consensus 88 ~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~~-~~~aal~epla~~~~~~a~~~~~ 166 (350)
T COG1063 88 IPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGID-EEAAALTEPLATAYHGHAERAAV 166 (350)
T ss_pred cCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCCC-hhhhhhcChhhhhhhhhhhccCC
Confidence 468889999988865533 1 258999999999866655 588884 55555555999998874455556
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEe
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFE 146 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d 146 (255)
+++.+|+|+|+|++|++++++++..|+.+|++++.+++|++++++ .|++.+++..+ ++..+.+.+.++| ++|++||
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~--~~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE--DDAGAEILELTGGRGADVVIE 244 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc--ccHHHHHHHHhCCCCCCEEEE
Confidence 666699999999999999999999999899999999999999988 66777777665 4677788889988 9999999
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcc
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYV 225 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (255)
|+|.+.+++.+++.++++ |+++.+|....... .++...++. ++++.|+... ....+++.+++++.+|++++..++
T Consensus 245 ~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~-~~~~~~~~~kel~l~gs~~~--~~~~~~~~~~~ll~~g~i~~~~li 320 (350)
T COG1063 245 AVGSPPALDQALEALRPG-GTVVVVGVYGGEDI-PLPAGLVVSKELTLRGSLRP--SGREDFERALDLLASGKIDPEKLI 320 (350)
T ss_pred CCCCHHHHHHHHHHhcCC-CEEEEEeccCCccC-ccCHHHHHhcccEEEeccCC--CCcccHHHHHHHHHcCCCChhHce
Confidence 999988899999999997 99999999754322 454555554 9999998421 123579999999999999999999
Q ss_pred eeeeecchHHHHHHHhhCCC--eeEEEEec
Q 025257 226 THNMTLGEINEAFRYMHGGD--CLRCVLKM 253 (255)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~--~~k~vi~~ 253 (255)
++.++++++++|++.+.+.+ .+|+++.+
T Consensus 321 t~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~ 350 (350)
T COG1063 321 THRLPLDDAAEAYELFADRKEEAIKVVLKP 350 (350)
T ss_pred EeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 89999999999999987654 45999864
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=227.11 Aligned_cols=228 Identities=55% Similarity=0.952 Sum_probs=195.1
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||++++++.++++|+++++++++.+++++.+||+++.+...++++++|||+|+|++|++++++++.+|+..|+++
T Consensus 135 ~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~ 214 (365)
T cd05279 135 TSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAV 214 (365)
T ss_pred cccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 47899999999999999999999999999999999999998888999999999999889999999999999999447788
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCc--hHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhc-cCCceEEEEccCCCCC
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDK--PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH-KGWGTSVIVGVAASGQ 178 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~--~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~-~~~G~~v~~g~~~~~~ 178 (255)
++++++.+.++++|+++++++++ . ++.+.+++.+++++|+++|++|....+..++++++ ++ |+++.+|......
T Consensus 215 ~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~ 291 (365)
T cd05279 215 DINKDKFEKAKQLGATECINPRD--QDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVGVPPSGT 291 (365)
T ss_pred eCCHHHHHHHHHhCCCeeccccc--ccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEecCCCCC
Confidence 88999999999999999998876 5 77788888775589999999997666899999999 96 9999998754233
Q ss_pred ccccCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEe
Q 025257 179 EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 252 (255)
Q Consensus 179 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~ 252 (255)
...++...+.++.++.|++...+...+.+.+++++++++.+++.+.+.++|+++++++|++.+.+++..|++++
T Consensus 292 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~ 365 (365)
T cd05279 292 EATLDPNDLLTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTILT 365 (365)
T ss_pred ceeeCHHHHhcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence 45555555545788888877666666788999999999998766567789999999999999888777788763
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=223.29 Aligned_cols=204 Identities=26% Similarity=0.388 Sum_probs=171.0
Q ss_pred ccceeeEEEEcCC-ceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEE
Q 025257 22 TSTFSQYTVVHDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 100 (255)
Q Consensus 22 ~g~~ae~~~v~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~ 100 (255)
+|+|+||+++|+. +++++|+++++++++.+++++.|||+++ +.....++++|||+|+|++|++++|+|+.+|+.+|++
T Consensus 72 ~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~ 150 (280)
T TIGR03366 72 SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVA 150 (280)
T ss_pred cccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 5999999999997 6999999999999999999999999987 4556679999999999999999999999999944899
Q ss_pred EcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCc
Q 025257 101 IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 179 (255)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 179 (255)
+++++++.++++++|++.++++.+ ..+.+++.+++ ++|++||++|.+..++.++++++++ |+++.+|.......
T Consensus 151 ~~~~~~r~~~a~~~Ga~~~i~~~~----~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~ 225 (280)
T TIGR03366 151 ADPSPDRRELALSFGATALAEPEV----LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAGSVFPGGP 225 (280)
T ss_pred ECCCHHHHHHHHHcCCcEecCchh----hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEeccCCCCCc
Confidence 998999999999999998888653 24566667766 8999999999887799999999997 99999997543334
Q ss_pred cccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHc--CCCCCCCcceeeeecchH
Q 025257 180 ISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMK--KEIKVDEYVTHNMTLGEI 234 (255)
Q Consensus 180 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 234 (255)
.+++...+.. ++++.|+... ..++++++++++.+ ++++++++++++||++++
T Consensus 226 ~~i~~~~~~~~~~~i~g~~~~---~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~ 280 (280)
T TIGR03366 226 VALDPEQVVRRWLTIRGVHNY---EPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV 280 (280)
T ss_pred eeeCHHHHHhCCcEEEecCCC---CHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence 4566666655 9999987643 23579999999997 466677888999999873
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=224.86 Aligned_cols=209 Identities=20% Similarity=0.244 Sum_probs=176.2
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
+|+|+||+.+++++++++|+++++++++.+++++.|||+++ ...++++|++|||+|+|++|++++|+|+..|+ +|+++
T Consensus 118 ~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~ 195 (329)
T TIGR02822 118 DGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVM 195 (329)
T ss_pred CCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEE
Confidence 58999999999999999999999999999999999999987 56889999999999999999999999999999 89999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~ 181 (255)
+++++++++++++|+++++++.+ .. .+++|+++++.+....+..++++++++ |+++.+|..... ..+
T Consensus 196 ~~~~~~~~~a~~~Ga~~vi~~~~--~~---------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~~G~~~~~-~~~ 262 (329)
T TIGR02822 196 TRGAAARRLALALGAASAGGAYD--TP---------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAVAGIHLTD-TPP 262 (329)
T ss_pred eCChHHHHHHHHhCCceeccccc--cC---------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEEEeccCcc-CCC
Confidence 99999999999999999987543 11 126899998888777799999999997 999999975322 223
Q ss_pred cCchhhc-cCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEE
Q 025257 182 TRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 182 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi 251 (255)
++...++ +++++.++.... +.++.++++++.++++++ ++++|+|+++++|++.+.+++.. |+||
T Consensus 263 ~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~---i~~~~~l~~~~~A~~~~~~~~~~Gkvvl 328 (329)
T TIGR02822 263 LNYQRHLFYERQIRSVTSNT---RADAREFLELAAQHGVRV---TTHTYPLSEADRALRDLKAGRFDGAAVL 328 (329)
T ss_pred CCHHHHhhCCcEEEEeecCC---HHHHHHHHHHHHhCCCee---EEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence 4444443 488888876432 256888999999999753 56899999999999999888776 9887
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=225.14 Aligned_cols=239 Identities=18% Similarity=0.209 Sum_probs=193.9
Q ss_pred CCCCCc-cccCCcccccccC-ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE-c-
Q 025257 3 NDRKSR-FSINGKPIYHFMG-TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-G- 78 (255)
Q Consensus 3 g~~~~~-~~~~g~~v~~~~~-~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~-G- 78 (255)
|+++.+ |++ ||+|+++.. +|+|+||+.++++.++++|+++++++++++++.+.|||. +...... +++.++|+ |
T Consensus 76 G~~v~~~~~v-Gd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g 152 (324)
T cd08291 76 GGGPLAQSLI-GKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAA 152 (324)
T ss_pred CCCccccCCC-CCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccC
Confidence 566665 888 999987654 399999999999999999999999999988888999975 4455555 45566665 5
Q ss_pred CChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHH
Q 025257 79 LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAA 157 (255)
Q Consensus 79 ~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~ 157 (255)
+|++|++++|+|+.+|+ +|+++++++++.+.++++|+++++++++ .++.+.+++.+++ ++|++||++|+.. ....
T Consensus 153 ~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~v~~~~~~~~~d~vid~~g~~~-~~~~ 228 (324)
T cd08291 153 ASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGAEYVLNSSD--PDFLEDLKELIAKLNATIFFDAVGGGL-TGQI 228 (324)
T ss_pred ccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC--ccHHHHHHHHhCCCCCcEEEECCCcHH-HHHH
Confidence 49999999999999999 9999999999999999999999999887 8898999988887 8999999999987 7888
Q ss_pred HHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCc---cCcHHHHHHHHHcCCCCCCCcceeeeecch
Q 025257 158 LECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMTLGE 233 (255)
Q Consensus 158 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (255)
+++++++ |+++.+|.........++...++ ++.++.++....+.. .+.+++++++++ +. +++.+.++|+|++
T Consensus 229 ~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~~~~~l~~ 304 (324)
T cd08291 229 LLAMPYG-STLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TE--LKTTFASRYPLAL 304 (324)
T ss_pred HHhhCCC-CEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-Cc--cccceeeEEcHHH
Confidence 9999996 99999987543222124334433 488999887655432 245777888887 66 4556888999999
Q ss_pred HHHHHHHhhCCCee-EEEEe
Q 025257 234 INEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 234 ~~~a~~~~~~~~~~-k~vi~ 252 (255)
+++|++.+.+++.. |++++
T Consensus 305 ~~~a~~~~~~~~~~Gkvv~~ 324 (324)
T cd08291 305 TLEAIAFYSKNMSTGKKLLI 324 (324)
T ss_pred HHHHHHHHHhCCCCCeEEeC
Confidence 99999999887655 99874
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=224.72 Aligned_cols=231 Identities=56% Similarity=0.954 Sum_probs=191.4
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||++++.++++++|+++++++++++++++.|||+++.....++++++|+|+|+|++|++++++++..|+.+|+++
T Consensus 142 ~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~ 221 (373)
T cd08299 142 TSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAV 221 (373)
T ss_pred CCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 58999999999999999999999999999999999999998888999999999999889999999999999998679999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHh-ccCCceEEEEccCCCCCcc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECC-HKGWGTSVIVGVAASGQEI 180 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~~~~~ 180 (255)
++++++++.++++|++++++..+...++.+.+.+.+++++|+++||+|.+..+...+..+ +.+ |+++.+|........
T Consensus 222 ~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~~~ 300 (373)
T cd08299 222 DINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVPPSSQNL 300 (373)
T ss_pred cCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccCCCCcee
Confidence 999999999999999999987651133667777766568999999999766577767765 565 999999976432234
Q ss_pred ccCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 181 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
+++...+.++.++.++..+.+.....+.++++.+.++.+++.+.+.++|+++++++|++.+.+++..|+++++
T Consensus 301 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~ 373 (373)
T cd08299 301 SINPMLLLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF 373 (373)
T ss_pred ecCHHHHhcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence 4444334457888888877665445677888888888777777778899999999999998877767888763
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=224.62 Aligned_cols=227 Identities=35% Similarity=0.624 Sum_probs=192.2
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||++++++.++++|+++++++++.+++++.||+.++.....++++++|||+|+|++|++++|+++..|+..++++
T Consensus 138 ~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~ 217 (365)
T cd08278 138 QSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAV 217 (365)
T ss_pred ccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 48999999999999999999999999999999999999998888899999999999889999999999999999568889
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~ 181 (255)
++++++.+.++++|++.++++++ .++.+.+.+.+++++|+++||+|.+..+..++++++++ |+++.+|.........
T Consensus 218 ~~~~~k~~~~~~~g~~~~i~~~~--~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~ 294 (365)
T cd08278 218 DIVDSRLELAKELGATHVINPKE--EDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVT 294 (365)
T ss_pred eCCHHHHHHHHHcCCcEEecCCC--cCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcCCCCCccc
Confidence 89999999999999999999886 77888888877339999999999766689999999997 9999999753323345
Q ss_pred cCchhh-ccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEe
Q 025257 182 TRPFQL-VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 252 (255)
Q Consensus 182 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~ 252 (255)
++...+ .++.++.++........+.+.+++++++++++.+.+.+ .+|+++++++|++.+.++...|++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~-~~~~l~~~~~a~~~~~~~~~~k~~~~ 365 (365)
T cd08278 295 LDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLV-TFYPFEDINQAIADSESGKVIKPVLR 365 (365)
T ss_pred cCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHhe-EEecHHHHHHHHHHHHCCCceEEEEC
Confidence 565555 44888888765443334567889999999987543333 58999999999999988877799875
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=224.88 Aligned_cols=226 Identities=23% Similarity=0.326 Sum_probs=175.1
Q ss_pred ccceeeEEEEcCC--ceEEcCCCCCc----ccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC
Q 025257 22 TSTFSQYTVVHDV--SVAKIDPQAPL----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 95 (255)
Q Consensus 22 ~g~~ae~~~v~~~--~~~~~p~~~~~----~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~ 95 (255)
+|+|+||+++|+. .++++|++++. ++++++..++.+||+++ ...+++++++|||.|+|++|++++|+|+.+|+
T Consensus 132 ~G~~aey~~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga 210 (393)
T TIGR02819 132 VGGQSEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGA 210 (393)
T ss_pred CCceEEEEEechhhCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 4899999999964 69999997653 34677777899999987 56889999999998889999999999999999
Q ss_pred CeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcH--------------HHHHHHHHH
Q 025257 96 SRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV--------------SVMRAALEC 160 (255)
Q Consensus 96 ~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~--------------~~~~~~~~~ 160 (255)
+.++++++++++.++++++|++.+.+..+ .++.+.+.+.+++ ++|++||++|.+ ..++.++++
T Consensus 211 ~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~--~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (393)
T TIGR02819 211 AVVIVGDLNPARLAQARSFGCETVDLSKD--ATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEV 288 (393)
T ss_pred ceEEEeCCCHHHHHHHHHcCCeEEecCCc--ccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHH
Confidence 44555677888999999999975443343 5677788888877 899999999985 359999999
Q ss_pred hccCCceEEEEccCCCCCccc-----------cCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcce-e
Q 025257 161 CHKGWGTSVIVGVAASGQEIS-----------TRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVT-H 227 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~~-----------~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 227 (255)
++++ |+++.+|......... +....... +.++.+.. ....+.+.++++++.+|++++.++++ +
T Consensus 289 ~~~~-G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~---~~~~~~~~~~~~~~~~g~i~~~~~i~~~ 364 (393)
T TIGR02819 289 TRVG-GAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQ---TPVMKYNRNLMQAILHDRVQIAKAVNVT 364 (393)
T ss_pred hhCC-CEEEEeeecCCcccccccccccccccccchHHhhccCceEEecc---CChhhhHHHHHHHHHcCCCCHHHceecc
Confidence 9997 9999999863221111 11112222 44554421 11113347899999999998877776 6
Q ss_pred eeecchHHHHHHHhhCCCeeEEEEecC
Q 025257 228 NMTLGEINEAFRYMHGGDCLRCVLKMQ 254 (255)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~k~vi~~~ 254 (255)
+|||+++++||+.+.+++.+|++|.++
T Consensus 365 ~~~l~~~~~a~~~~~~~~~~Kvvi~~~ 391 (393)
T TIGR02819 365 VISLDDAPEGYAEFDAGAAKKFVIDPH 391 (393)
T ss_pred eecHHHHHHHHHHHhhCCceEEEEeCC
Confidence 899999999999998877779999874
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=222.13 Aligned_cols=235 Identities=18% Similarity=0.226 Sum_probs=190.2
Q ss_pred CccccCCcccccccCccceeeEEEEcCCceEEc----CCCCCcccc-cccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 7 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI----DPQAPLDKV-CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 7 ~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~----p~~~~~~~a-a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
.+|.+ ||+|+++ ++|++|+.++.+++.++ |++++++++ +++++++.|||+++.+..++++|++|||+|+ |
T Consensus 74 ~~~~~-GdrV~~~---~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g 149 (325)
T TIGR02825 74 VALPK-GTIVLAS---PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAG 149 (325)
T ss_pred CCCCC-CCEEEEe---cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCcc
Confidence 45777 9999875 47999999999988887 889999987 6788899999999888899999999999996 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCc-hHHHHHHhhcCCCccEEEecCCcHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK-PIQQVLVDLTDGGVDYSFECIGNVSVMRAALE 159 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~-~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~ 159 (255)
++|++++|+|+..|+ +|+++++++++.++++++|++.++++++ . .+.+.++..+++++|++||++|++. ++..++
T Consensus 150 ~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~--~~~~~~~~~~~~~~gvdvv~d~~G~~~-~~~~~~ 225 (325)
T TIGR02825 150 AVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT--VKSLEETLKKASPDGYDCYFDNVGGEF-SNTVIG 225 (325)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc--cccHHHHHHHhCCCCeEEEEECCCHHH-HHHHHH
Confidence 999999999999999 9999999999999999999999999875 4 4656666665448999999999887 899999
Q ss_pred HhccCCceEEEEccCCCCC---cccc--Cchh-hccCcEEEEeeeCCCCc---cCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 160 CCHKGWGTSVIVGVAASGQ---EIST--RPFQ-LVTGRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 160 ~l~~~~G~~v~~g~~~~~~---~~~~--~~~~-~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
+++++ |+++.+|...... ..+. .... +++++++.++....+.. .+.++++++++++|++++. +..+|+
T Consensus 226 ~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~ 302 (325)
T TIGR02825 226 QMKKF-GRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYK--EYVIEG 302 (325)
T ss_pred HhCcC-cEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccc--eecccc
Confidence 99997 9999998753211 1111 1122 33477887776533221 2357889999999997765 446799
Q ss_pred cchHHHHHHHhhCCCee-EEEEe
Q 025257 231 LGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
++++++|++.+.+++.. |+|++
T Consensus 303 l~~~~~A~~~~~~~~~~gkvVv~ 325 (325)
T TIGR02825 303 FENMPAAFMGMLKGENLGKTIVK 325 (325)
T ss_pred HHHHHHHHHHHhcCCCCCeEEeC
Confidence 99999999999888766 98874
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=221.98 Aligned_cols=217 Identities=20% Similarity=0.290 Sum_probs=180.1
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
+|+|+||++++...++++|+++++++++++++++.|||+++......+++++|+|+|+|++|++++|+|+.+|+ +|+++
T Consensus 132 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~ 210 (357)
T PLN02514 132 QGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVI 210 (357)
T ss_pred CCccccEEEEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEE
Confidence 58999999999999999999999999999999999999988666667899999999889999999999999999 89988
Q ss_pred cCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcc
Q 025257 102 DIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180 (255)
Q Consensus 102 ~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 180 (255)
++++++++.+ +++|++.++++.+ . +.+.+.+. ++|++|||+|.+..++..+++++++ |+++.+|.... ..
T Consensus 211 ~~~~~~~~~~~~~~Ga~~~i~~~~--~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~ 281 (357)
T PLN02514 211 SSSDKKREEALEHLGADDYLVSSD--A---AEMQEAAD-SLDYIIDTVPVFHPLEPYLSLLKLD-GKLILMGVINT--PL 281 (357)
T ss_pred eCCHHHHHHHHHhcCCcEEecCCC--h---HHHHHhcC-CCcEEEECCCchHHHHHHHHHhccC-CEEEEECCCCC--CC
Confidence 8887777665 6799988877653 2 23444443 6999999999776689999999997 99999998642 33
Q ss_pred ccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecC
Q 025257 181 STRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 181 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
+++...++. +.++.|+..+.. .++.++++++.+|.++ +.+ ++||++++++||+.+.+++.. |+++.++
T Consensus 282 ~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~~~~g~l~--~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~~ 351 (357)
T PLN02514 282 QFVTPMLMLGRKVITGSFIGSM---KETEEMLEFCKEKGLT--SMI-EVVKMDYVNTAFERLEKNDVRYRFVVDVA 351 (357)
T ss_pred cccHHHHhhCCcEEEEEecCCH---HHHHHHHHHHHhCCCc--CcE-EEEcHHHHHHHHHHHHcCCCceeEEEEcc
Confidence 455554544 889999876533 5789999999999854 445 589999999999999888776 9999875
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=207.52 Aligned_cols=241 Identities=22% Similarity=0.263 Sum_probs=199.7
Q ss_pred CCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcc--cccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 4 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLD--KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 4 ~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~--~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
+....|++ ||.|.+. .+|+||..++.+.+.|++++.-.- ....+.++..|||.+|.+.+++++|++|+|.|| |
T Consensus 86 S~~~~f~~-GD~V~~~---~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaG 161 (340)
T COG2130 86 SNHPGFQP-GDIVVGV---SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAG 161 (340)
T ss_pred cCCCCCCC-CCEEEec---ccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEeccc
Confidence 45678999 9988865 479999999999999997542211 234466689999999999999999999999987 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALE 159 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~ 159 (255)
++|..+.|+||..|+ +|++++.+++|.+++++ +|.+..|||+. +++.+.+.+..+.++|+.||++|++. ++..+.
T Consensus 162 aVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~--~d~~~~L~~a~P~GIDvyfeNVGg~v-~DAv~~ 237 (340)
T COG2130 162 AVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA--EDFAQALKEACPKGIDVYFENVGGEV-LDAVLP 237 (340)
T ss_pred ccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc--ccHHHHHHHHCCCCeEEEEEcCCchH-HHHHHH
Confidence 999999999999999 99999999999999977 99999999999 99999999999889999999999999 999999
Q ss_pred HhccCCceEEEEccCCC--CCccccC---chhhcc-CcEEEEeeeCC-CCc--cCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 160 CCHKGWGTSVIVGVAAS--GQEISTR---PFQLVT-GRVWKGTAFGG-FKS--RSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 160 ~l~~~~G~~v~~g~~~~--~~~~~~~---~~~~~~-~~~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
.|+.. +|++.||..+. ....+.. ...++. .+++.|+...+ +.. .+..+++..++.+|+++.++.+ +=.
T Consensus 238 ~ln~~-aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti--~dG 314 (340)
T COG2130 238 LLNLF-ARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETI--VDG 314 (340)
T ss_pred hhccc-cceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEeee--hhh
Confidence 99995 99999997541 1111111 222344 89999998733 321 2456788889999999887654 346
Q ss_pred cchHHHHHHHhhCCCee-EEEEecCC
Q 025257 231 LGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
|+++++||..|.+++.+ |.|+++.+
T Consensus 315 lEnaP~Af~gLl~G~N~GK~vvKv~~ 340 (340)
T COG2130 315 LENAPEAFIGLLSGKNFGKLVVKVAD 340 (340)
T ss_pred hhccHHHHHHHhcCCccceEEEEecC
Confidence 99999999999999887 99998764
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-31 Score=219.15 Aligned_cols=243 Identities=21% Similarity=0.309 Sum_probs=188.6
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCccc----ccccccchhhhhhHHHhhcCCCCC--CEEE
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK----VCLLGCGVPTGLGAVWNTAKVEPG--SIVA 75 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~--~~vl 75 (255)
+|.++.+|++ ||+|+++. ++|+||++++++.++++|+++++++ +++++.++.|||+++.+..+++++ ++||
T Consensus 83 vG~~v~~~~~-Gd~V~~~~--~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~Vl 159 (345)
T cd08293 83 EESKHQKFAV-GDIVTSFN--WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMV 159 (345)
T ss_pred eccCCCCCCC-CCEEEecC--CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEE
Confidence 4678888999 99998753 6899999999999999999865443 456777899999998888888877 9999
Q ss_pred EEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHH
Q 025257 76 VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSV 153 (255)
Q Consensus 76 I~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~ 153 (255)
|+|+ |++|++++|+|+.+|+.+|+++++++++.+.+++ +|+++++++++ .++.+.+++.+++++|++||++|+..
T Consensus 160 I~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~--~~~~~~i~~~~~~gvd~vid~~g~~~- 236 (345)
T cd08293 160 VSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT--DNVAERLRELCPEGVDVYFDNVGGEI- 236 (345)
T ss_pred EECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC--CCHHHHHHHHCCCCceEEEECCCcHH-
Confidence 9997 9999999999999998569999999999999876 99999999887 78888888877668999999999987
Q ss_pred HHHHHHHhccCCceEEEEccCCCC-Cccc----cC--chhhcc--CcEEEEeeeCCCC--ccCcHHHHHHHHHcCCCCCC
Q 025257 154 MRAALECCHKGWGTSVIVGVAASG-QEIS----TR--PFQLVT--GRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVD 222 (255)
Q Consensus 154 ~~~~~~~l~~~~G~~v~~g~~~~~-~~~~----~~--~~~~~~--~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 222 (255)
+..++++++++ |+++.+|..... ...+ +. ...+.+ +.++..+...... ..+.+++++++++++.+++.
T Consensus 237 ~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~ 315 (345)
T cd08293 237 SDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVK 315 (345)
T ss_pred HHHHHHHhccC-CEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCccce
Confidence 89999999997 999999853211 1011 11 011122 3333333222211 12346678889999997654
Q ss_pred CcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 223 EYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 223 ~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
...+++++++++|++.+.+++.. |+|+++
T Consensus 316 --~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~ 345 (345)
T cd08293 316 --ETVYEGLENAGEAFQSMMNGGNIGKQIVKV 345 (345)
T ss_pred --eEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 34467999999999999888766 999874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=217.66 Aligned_cols=226 Identities=24% Similarity=0.385 Sum_probs=185.1
Q ss_pred ccceeeEEEEcCC--ceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEE
Q 025257 22 TSTFSQYTVVHDV--SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI 99 (255)
Q Consensus 22 ~g~~ae~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~ 99 (255)
.|+|+||+.++.. .++++|++++++++++++.++.||++++ ....++++++|||+|+|++|++++|+++.+|+..|+
T Consensus 117 ~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~ 195 (351)
T cd08285 117 DGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRII 195 (351)
T ss_pred CcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence 5899999999974 8999999999999999998999999985 778999999999998899999999999999995588
Q ss_pred EEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCC
Q 025257 100 GIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 178 (255)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~ 178 (255)
++++++++.+.++++|++.++++.+ .++.+.+.+.+.+ ++|+++||+|++..+...+++++++ |+++.+|......
T Consensus 196 ~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~ 272 (351)
T cd08285 196 AVGSRPNRVELAKEYGATDIVDYKN--GDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDD 272 (351)
T ss_pred EEeCCHHHHHHHHHcCCceEecCCC--CCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCCc
Confidence 8888889999999999999999887 7888888887776 8999999999876689999999997 9999998765322
Q ss_pred ccccCchhh---ccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCC-cceeeeecchHHHHHHHhhCCC--eeEEEEe
Q 025257 179 EISTRPFQL---VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDE-YVTHNMTLGEINEAFRYMHGGD--CLRCVLK 252 (255)
Q Consensus 179 ~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~--~~k~vi~ 252 (255)
..+++...+ ....++.+..... ..++++++++++++|++.+.. .+.++|+++++++|++.+.+++ .+|++|+
T Consensus 273 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~ 350 (351)
T cd08285 273 YLPIPREEWGVGMGHKTINGGLCPG--GRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVII 350 (351)
T ss_pred eeecChhhhhhhccccEEEEeecCC--ccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEe
Confidence 233332122 2245555443211 236789999999999987743 3345699999999999998775 3599987
Q ss_pred c
Q 025257 253 M 253 (255)
Q Consensus 253 ~ 253 (255)
+
T Consensus 351 ~ 351 (351)
T cd08285 351 F 351 (351)
T ss_pred C
Confidence 4
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=218.54 Aligned_cols=237 Identities=20% Similarity=0.243 Sum_probs=191.4
Q ss_pred CCccccCCcccccccCccceeeEEEEcCC---ceEEcCCCCC--c---ccccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 6 KSRFSINGKPIYHFMGTSTFSQYTVVHDV---SVAKIDPQAP--L---DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 6 ~~~~~~~g~~v~~~~~~g~~ae~~~v~~~---~~~~~p~~~~--~---~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
+.+|.+ ||+|+++ ++|++|++++.. .++++|++++ + ..+++++++++|||+++.+..++++|++|||+
T Consensus 75 ~~~~~~-Gd~V~~~---~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ 150 (329)
T cd08294 75 NSKFPV-GTIVVAS---FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVN 150 (329)
T ss_pred CCCCCC-CCEEEee---CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 346778 9999864 579999999999 9999999988 2 22346788999999998888999999999999
Q ss_pred cC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHH
Q 025257 78 GL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRA 156 (255)
Q Consensus 78 G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~ 156 (255)
|+ |++|++++|+|+..|+ +|+++++++++.++++++|+++++++++ +++.+.+++.+++++|++||++|++. +..
T Consensus 151 ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~--~~~~~~v~~~~~~gvd~vld~~g~~~-~~~ 226 (329)
T cd08294 151 GAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKT--VSLEEALKEAAPDGIDCYFDNVGGEF-SST 226 (329)
T ss_pred cCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC--ccHHHHHHHHCCCCcEEEEECCCHHH-HHH
Confidence 86 9999999999999999 9999999999999999999999999987 88888888777668999999999966 899
Q ss_pred HHHHhccCCceEEEEccCCCCCc--c---ccCchh-hccCcEEEEeeeCCCC--ccCcHHHHHHHHHcCCCCCCCcceee
Q 025257 157 ALECCHKGWGTSVIVGVAASGQE--I---STRPFQ-LVTGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEYVTHN 228 (255)
Q Consensus 157 ~~~~l~~~~G~~v~~g~~~~~~~--~---~~~~~~-~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (255)
.+++++++ |+++.+|....... . ...... +++++++.++....+. ..+.+++++++++++.+++. ...+
T Consensus 227 ~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~ 303 (329)
T cd08294 227 VLSHMNDF-GRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYR--EHVT 303 (329)
T ss_pred HHHhhccC-CEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCC--cccc
Confidence 99999996 99999986422111 0 111222 3347888887654331 12346788899999997664 3357
Q ss_pred eecchHHHHHHHhhCCCee-EEEEec
Q 025257 229 MTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
|+++++++|++.+.+++.. |+|+++
T Consensus 304 ~~l~~~~~A~~~~~~~~~~gkvvv~~ 329 (329)
T cd08294 304 EGFENMPQAFIGMLKGENTGKAIVKV 329 (329)
T ss_pred cCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 9999999999999887766 999864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=217.52 Aligned_cols=240 Identities=17% Similarity=0.200 Sum_probs=201.4
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-Ch
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GT 81 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~ 81 (255)
|+++..+++ ||+|+++...|+|++|++++...++++|+++++++++.+++.+.|||+++ ...+++++++|||+|+ |.
T Consensus 74 G~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ 151 (324)
T cd08292 74 GEGVKGLQV-GQRVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGA 151 (324)
T ss_pred CCCCCCCCC-CCEEEeccCCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccH
Confidence 566777888 99999876579999999999999999999999999999998999999986 5689999999999987 99
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHH
Q 025257 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 82 vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~ 160 (255)
+|++++|+|+.+|+ +++++++++++.+.++++|+++++++++ .++.+.+.+.+++ ++|++|||+|++. ....+++
T Consensus 152 ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~~~~~~d~v~d~~g~~~-~~~~~~~ 227 (324)
T cd08292 152 VGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVVSTEQ--PGWQDKVREAAGGAPISVALDSVGGKL-AGELLSL 227 (324)
T ss_pred HHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEEcCCC--chHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHh
Confidence 99999999999999 9999999999999998899999998887 7888889998888 9999999999976 8899999
Q ss_pred hccCCceEEEEccCCCCCccccCchhh-ccCcEEEEeeeCCCCc-------cCcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 161 CHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKS-------RSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
++++ |+++.+|... ....+++.... .++.++.++....+.. .+.+.++++++.++.+.+. +.++|+++
T Consensus 228 l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~~~ 303 (324)
T cd08292 228 LGEG-GTLVSFGSMS-GEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFDLG 303 (324)
T ss_pred hcCC-cEEEEEecCC-CCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEecHH
Confidence 9996 9999998752 22333443333 3488888887643221 2357789999999997653 35789999
Q ss_pred hHHHHHHHhhCCCee-EEEEe
Q 025257 233 EINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 233 ~~~~a~~~~~~~~~~-k~vi~ 252 (255)
++++|++.+.++... |++++
T Consensus 304 ~~~~a~~~~~~~~~~~kvvv~ 324 (324)
T cd08292 304 DAAKAAAASMRPGRAGKVLLR 324 (324)
T ss_pred HHHHHHHHHHcCCCCceEEeC
Confidence 999999998876655 88864
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-31 Score=219.46 Aligned_cols=218 Identities=21% Similarity=0.269 Sum_probs=168.6
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHh------hcCCCCCCEEEEEcCChHHHHHHHHHHHcCC
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN------TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 95 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~------~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~ 95 (255)
+|+|+||+.+++.+++++|++++ +. +++..++.++++++.. ...++++++|+|+|+|++|++++|+|+.+|+
T Consensus 120 ~G~~aey~~~~~~~~~~~P~~~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~ 197 (355)
T cd08230 120 HGFMREYFVDDPEYLVKVPPSLA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF 197 (355)
T ss_pred CccceeEEEeccccEEECCCCCC-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 48999999999999999999998 44 4444466666554322 2236789999999999999999999999999
Q ss_pred CeEEEEcC---CcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEc
Q 025257 96 SRVIGIDI---DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 96 ~~v~~~~~---~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+|+++++ ++++++.++++|++. +++.+ +++.+ .+ . .+++|+||||+|.+..+...+++++++ |+++.+|
T Consensus 198 -~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~--~~~~~-~~-~-~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~G 269 (355)
T cd08230 198 -EVYVLNRRDPPDPKADIVEELGATY-VNSSK--TPVAE-VK-L-VGEFDLIIEATGVPPLAFEALPALAPN-GVVILFG 269 (355)
T ss_pred -eEEEEecCCCCHHHHHHHHHcCCEE-ecCCc--cchhh-hh-h-cCCCCEEEECcCCHHHHHHHHHHccCC-cEEEEEe
Confidence 8999987 678999999999986 56655 44443 22 1 238999999999876689999999997 9999999
Q ss_pred cCCCCCccccC----chhhc-cCcEEEEeeeCCCCccCcHHHHHHHHHcCCC----CCCCcceeeeecchHHHHHHHhhC
Q 025257 173 VAASGQEISTR----PFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEI----KVDEYVTHNMTLGEINEAFRYMHG 243 (255)
Q Consensus 173 ~~~~~~~~~~~----~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~ 243 (255)
........+++ ...++ ++.++.|+.... .++++++++++.++.+ .+.+.++++|+++++++|++.+.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~ 346 (355)
T cd08230 270 VPGGGREFEVDGGELNRDLVLGNKALVGSVNAN---KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPD 346 (355)
T ss_pred cCCCCCccccChhhhhhhHhhcCcEEEEecCCc---hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhccc
Confidence 86542333444 23333 489999876433 3578999999988762 256678899999999999998865
Q ss_pred CCeeEEEEec
Q 025257 244 GDCLRCVLKM 253 (255)
Q Consensus 244 ~~~~k~vi~~ 253 (255)
+. .|++|++
T Consensus 347 ~~-~K~v~~~ 355 (355)
T cd08230 347 GE-IKVVIEW 355 (355)
T ss_pred CC-eEEEeeC
Confidence 43 5999875
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=219.96 Aligned_cols=246 Identities=17% Similarity=0.214 Sum_probs=191.4
Q ss_pred CCCCCC-ccccCCccccccc----------------CccceeeEEEEcCC----ceEEcCCCCCcccccccccch---hh
Q 025257 2 MNDRKS-RFSINGKPIYHFM----------------GTSTFSQYTVVHDV----SVAKIDPQAPLDKVCLLGCGV---PT 57 (255)
Q Consensus 2 ~g~~~~-~~~~~g~~v~~~~----------------~~g~~ae~~~v~~~----~~~~~p~~~~~~~aa~~~~~~---~t 57 (255)
.|+++. +|++ ||+|+... .+|+|+||++++++ .++++|+++++++++++. ++ .+
T Consensus 77 vG~~v~~~~~v-GdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~e-pl~~~~~ 154 (410)
T cd08238 77 VGKKWQGKYKP-GQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVE-PLSCVIG 154 (410)
T ss_pred eCCCccCCCCC-CCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcc-hHHHHHH
Confidence 366776 5888 99997531 25999999999987 689999999999988653 22 12
Q ss_pred hhhHH--------HhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhc--------CCc-
Q 025257 58 GLGAV--------WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAKNF--------GVT- 117 (255)
Q Consensus 58 a~~~l--------~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~~--------g~~- 117 (255)
++.++ .+..+++++++|+|+|+ |++|++++|+|+.+| +.+|+++++++++++.++++ |++
T Consensus 155 ~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~ 234 (410)
T cd08238 155 AYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIEL 234 (410)
T ss_pred HhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceE
Confidence 33332 24578899999999985 999999999999975 44799999999999999987 766
Q ss_pred EEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCC-CCccccCchhhcc-CcEEE
Q 025257 118 EFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS-GQEISTRPFQLVT-GRVWK 194 (255)
Q Consensus 118 ~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~-~~~~~ 194 (255)
.++++.+ ++++.+.+++.+++ ++|+++|++|.+..+..++++++++ |+++.++.... ....+++...+.. +.++.
T Consensus 235 ~~i~~~~-~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~-G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~ 312 (410)
T cd08238 235 LYVNPAT-IDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPD-GCLNFFAGPVDKNFSAPLNFYNVHYNNTHYV 312 (410)
T ss_pred EEECCCc-cccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccC-CeEEEEEccCCCCccccccHHHhhhcCcEEE
Confidence 5677653 14677888888887 8999999999877799999999996 88777644221 1123455555554 89999
Q ss_pred EeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEecC
Q 025257 195 GTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 254 (255)
Q Consensus 195 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~ 254 (255)
|+..+. ..+++++++++.+|++++.++++++|||+++++|++.+..+...|+||.++
T Consensus 313 g~~~~~---~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~gKvvl~~~ 369 (410)
T cd08238 313 GTSGGN---TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLPGIPGGKKLIYTQ 369 (410)
T ss_pred EeCCCC---HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhhccCCceEEEECC
Confidence 876432 257899999999999988888999999999999999998333449999874
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.1e-30 Score=214.74 Aligned_cols=228 Identities=46% Similarity=0.770 Sum_probs=192.7
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEE
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 100 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~ 100 (255)
..|+|+||++++.+.++++|+++++++++++++++.|||+++.+..+++++++|||+|+|++|++++++++..|+.+|++
T Consensus 133 ~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~ 212 (363)
T cd08279 133 GLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIA 212 (363)
T ss_pred cCccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence 35899999999999999999999999999999999999999888899999999999988999999999999999934999
Q ss_pred EcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCc
Q 025257 101 IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 179 (255)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 179 (255)
+++++++.+.++++|++++++++. .++.+.+.+.+.+ ++|+++|+++....+...+++++++ |+++.+|.......
T Consensus 213 ~~~~~~~~~~~~~~g~~~vv~~~~--~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~ 289 (363)
T cd08279 213 VDPVPEKLELARRFGATHTVNASE--DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGET 289 (363)
T ss_pred EcCCHHHHHHHHHhCCeEEeCCCC--ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecCCCCcc
Confidence 999999999999999999998886 7888888888766 8999999999766589999999996 99999987543233
Q ss_pred cccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEE
Q 025257 180 ISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 251 (255)
Q Consensus 180 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi 251 (255)
..++...+.. +..+.++.++.....+.+++++++++++.+.+.+.+.++|+++++++|++.+.+++..|.||
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (363)
T cd08279 290 VSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI 362 (363)
T ss_pred cccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence 4455555543 77777776654444567889999999999876555668899999999999998877666554
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=217.77 Aligned_cols=213 Identities=17% Similarity=0.243 Sum_probs=165.0
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHh--hcCCCCCCEEEEEcCChHHHHHHHHHHH-cCCCeE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRV 98 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~vlI~G~g~vG~~a~~l~~~-~g~~~v 98 (255)
+|+|+||+++|+++++++|+++++++||++. ++++||+++.. ...+++|++|||+|+|++|++++|+++. .|..+|
T Consensus 114 ~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~v 192 (341)
T cd08237 114 DGFMQDYVFLPPDRLVKLPDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKL 192 (341)
T ss_pred CCceEEEEEEchHHeEECCCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcE
Confidence 4899999999999999999999999887665 88999998754 3457899999999999999999999996 665489
Q ss_pred EEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCc---HHHHHHHHHHhccCCceEEEEccC
Q 025257 99 IGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++++++++|++++++.+++..++ ++ ..+ ++|+|||++|+ +..++.++++++++ |+++.+|..
T Consensus 193 i~~~~~~~k~~~a~~~~~~~~~~------~~-------~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~iv~~G~~ 258 (341)
T cd08237 193 VVFGKHQEKLDLFSFADETYLID------DI-------PEDLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTIGLMGVS 258 (341)
T ss_pred EEEeCcHhHHHHHhhcCceeehh------hh-------hhccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEEEEEeec
Confidence 99999999999998866553321 11 122 69999999994 45689999999997 999999975
Q ss_pred CCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcC---CCCCCCcceeeeecchH---HHHHHHhhCCCee
Q 025257 175 ASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKK---EIKVDEYVTHNMTLGEI---NEAFRYMHGGDCL 247 (255)
Q Consensus 175 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~ 247 (255)
. .+.+++...++. ++++.|+.... ..+++++++++.++ ..++++.++++|+++++ .+|++.+.++...
T Consensus 259 ~--~~~~~~~~~~~~k~~~i~g~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~g 333 (341)
T cd08237 259 E--YPVPINTRMVLEKGLTLVGSSRST---REDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWG 333 (341)
T ss_pred C--CCcccCHHHHhhCceEEEEecccC---HHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcc
Confidence 3 234555555544 89999886432 25789999999998 33577788899998655 5555544444344
Q ss_pred EEEEecC
Q 025257 248 RCVLKMQ 254 (255)
Q Consensus 248 k~vi~~~ 254 (255)
|+||+++
T Consensus 334 Kvvi~~~ 340 (341)
T cd08237 334 KTVMEWE 340 (341)
T ss_pred eEEEEee
Confidence 9999874
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=214.11 Aligned_cols=224 Identities=20% Similarity=0.215 Sum_probs=172.8
Q ss_pred CCCCCccccCCccccccc---------CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCE
Q 025257 3 NDRKSRFSINGKPIYHFM---------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSI 73 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~ 73 (255)
|.++ .|++ ||+|+... ..|+|+||+++|++.++++|+.++++. ++++ ++.|||+++.+ . ..++++
T Consensus 74 G~~v-~~~v-GdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~ 147 (308)
T TIGR01202 74 GPDT-GFRP-GDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAG-A-EVKVLP 147 (308)
T ss_pred cCCC-CCCC-CCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCc
Confidence 5566 5888 99998421 159999999999999999999998764 5555 57899998744 3 346889
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHH
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSV 153 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~ 153 (255)
|+|+|+|++|++++|+|+++|++.|++++.++++.+.++. ..++|+.+ . .++++|+||||+|.+..
T Consensus 148 vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~---~~~i~~~~--~---------~~~g~Dvvid~~G~~~~ 213 (308)
T TIGR01202 148 DLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG---YEVLDPEK--D---------PRRDYRAIYDASGDPSL 213 (308)
T ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh---ccccChhh--c---------cCCCCCEEEECCCCHHH
Confidence 9999999999999999999999446666666666665544 34555432 1 12379999999999876
Q ss_pred HHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 154 MRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 154 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
++.++++++++ |+++.+|.... ..+++...++. ++++.++... ..++++++++++++|++++.+.++++|||+
T Consensus 214 ~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~g~i~~~~~it~~~~l~ 287 (308)
T TIGR01202 214 IDTLVRRLAKG-GEIVLAGFYTE--PVNFDFVPAFMKEARLRIAAEW---QPGDLHAVRELIESGALSLDGLITHQRPAS 287 (308)
T ss_pred HHHHHHhhhcC-cEEEEEeecCC--CcccccchhhhcceEEEEeccc---chhHHHHHHHHHHcCCCChhhccceeecHH
Confidence 89999999997 99999998542 33455444444 7888776532 236799999999999998888899999999
Q ss_pred hHHHHHHHhhCCC-eeEEEEe
Q 025257 233 EINEAFRYMHGGD-CLRCVLK 252 (255)
Q Consensus 233 ~~~~a~~~~~~~~-~~k~vi~ 252 (255)
++++|++.+.++. .+|++|+
T Consensus 288 ~~~~A~~~~~~~~~~~Kv~~~ 308 (308)
T TIGR01202 288 DAAEAYMTAFSDPDCLKMILD 308 (308)
T ss_pred HHHHHHHHHhcCcCceEEEeC
Confidence 9999999876554 4599874
|
|
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=212.55 Aligned_cols=236 Identities=24% Similarity=0.318 Sum_probs=197.4
Q ss_pred CCCCCccccCCccccccc---------------------------CccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYHFM---------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|.++..+++ ||+|+++. ..|+|++|+.++.++++++|+++++++++.++..+
T Consensus 73 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~ 151 (340)
T cd05284 73 GSGVDGLKE-GDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAG 151 (340)
T ss_pred CCCCCcCcC-CCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchH
Confidence 566777888 99997543 25899999999999999999999999999999999
Q ss_pred hhhhhHHHhh-cCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHH
Q 025257 56 PTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVL 133 (255)
Q Consensus 56 ~ta~~~l~~~-~~~~~~~~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i 133 (255)
.|||+++... ..+.++++|||+|+|++|++++++|+..| . +|+++++++++.+.++++|+++++++++ . +.+.+
T Consensus 152 ~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~-~~~~i 227 (340)
T cd05284 152 LTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVLNASD--D-VVEEV 227 (340)
T ss_pred HHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEEcCCc--c-HHHHH
Confidence 9999998766 46889999999999889999999999999 7 9999999999999999999999999886 5 88888
Q ss_pred HhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchh-hccCcEEEEeeeCCCCccCcHHHHH
Q 025257 134 VDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKSRSQVPWLV 211 (255)
Q Consensus 134 ~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ 211 (255)
++.+++ ++|+++|++|++..++..+++++++ |+++.+|.... .+++... +.++.++.++... ....+.+++
T Consensus 228 ~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 300 (340)
T cd05284 228 RELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH---GRLPTSDLVPTEISVIGSLWG---TRAELVEVV 300 (340)
T ss_pred HHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEEcCCCC---CccCHHHhhhcceEEEEEecc---cHHHHHHHH
Confidence 888877 8999999999866589999999997 99999987532 2333333 3348888877543 235788899
Q ss_pred HHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 212 DKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++++.+.+ ..++|+++++++|++.+.+++.. |+++.+
T Consensus 301 ~~l~~g~l~~---~~~~~~~~~~~~a~~~~~~~~~~gkvv~~~ 340 (340)
T cd05284 301 ALAESGKVKV---EITKFPLEDANEALDRLREGRVTGRAVLVP 340 (340)
T ss_pred HHHHhCCCCc---ceEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence 9999998754 23679999999999999887766 888753
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=211.45 Aligned_cols=244 Identities=28% Similarity=0.429 Sum_probs=197.4
Q ss_pred CCCCCCccccCCcccccc------------------------------cCccceeeEEEEcCC--ceEEcCCCCCccccc
Q 025257 2 MNDRKSRFSINGKPIYHF------------------------------MGTSTFSQYTVVHDV--SVAKIDPQAPLDKVC 49 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~------------------------------~~~g~~ae~~~v~~~--~~~~~p~~~~~~~aa 49 (255)
.|+++..+++ ||+|++. ...|+|+||++++.+ +++++|+++++++++
T Consensus 69 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa 147 (347)
T cd05278 69 VGSDVKRLKP-GDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDAL 147 (347)
T ss_pred ECCCccccCC-CCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHh
Confidence 3667777888 9988751 235899999999987 899999999999999
Q ss_pred ccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchH
Q 025257 50 LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPI 129 (255)
Q Consensus 50 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~ 129 (255)
.++.++.|||+++ ...+++++++|||.|+|++|++++|+|+.+|+.+++++++++++.+.++++|++.++++++ .++
T Consensus 148 ~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~--~~~ 224 (347)
T cd05278 148 MLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKN--GDI 224 (347)
T ss_pred hhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc--chH
Confidence 9999999999987 7788999999999888999999999999999647888888888888889999999999887 778
Q ss_pred HHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCccCcHH
Q 025257 130 QQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVP 208 (255)
Q Consensus 130 ~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 208 (255)
.+.+++.+++ ++|++||++++...+...+++++++ |+++.+|..............+.++.++.++.... .+.++
T Consensus 225 ~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 300 (347)
T cd05278 225 VEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPV---RARMP 300 (347)
T ss_pred HHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEEEEEcCCCCCcccCccchhhhceeEEEeeccCc---hhHHH
Confidence 8888888776 8999999999855589999999997 99999986533211112222233477776654322 35788
Q ss_pred HHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCe-e-EEEEec
Q 025257 209 WLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC-L-RCVLKM 253 (255)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~-k~vi~~ 253 (255)
+++++++++.+.+.+.+..+|+++++++|++.+..++. . |+|+++
T Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~ 347 (347)
T cd05278 301 ELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP 347 (347)
T ss_pred HHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence 99999999998765445678999999999999887765 4 988864
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=210.66 Aligned_cols=216 Identities=22% Similarity=0.360 Sum_probs=182.8
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+++||+.++...++++|+++++++++.+++++.|||+++. ..+++++++|||+|+|++|++++++|+.+|+ +|+++
T Consensus 116 ~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~ 193 (333)
T cd08296 116 DGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAI 193 (333)
T ss_pred CCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEE
Confidence 589999999999999999999999999999999999999874 4589999999999999999999999999999 99999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~ 181 (255)
++++++.+.++++|+++++++.+ .++.+.+.+. +++|+++|++|....++..+++++++ |+++.+|... ...+
T Consensus 194 ~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~ 266 (333)
T cd08296 194 SRGSDKADLARKLGAHHYIDTSK--EDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLILGAAG--EPVA 266 (333)
T ss_pred eCChHHHHHHHHcCCcEEecCCC--ccHHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccC-CEEEEEecCC--CCCC
Confidence 99999999999999999998876 6777777665 36999999997666699999999997 9999999864 2344
Q ss_pred cCchhh-ccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEe
Q 025257 182 TRPFQL-VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 182 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
++...+ .++.++.++..+. ..++..++++++++.++. .+ ++|+++++.+|++.+.+++.. |+|++
T Consensus 267 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~ 333 (333)
T cd08296 267 VSPLQLIMGRKSIHGWPSGT---ALDSEDTLKFSALHGVRP--MV-ETFPLEKANEAYDRMMSGKARFRVVLT 333 (333)
T ss_pred cCHHHHhhcccEEEEeCcCC---HHHHHHHHHHHHhCCCCc--eE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence 554444 3499998876432 256888899988887543 34 589999999999999988876 99874
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=215.40 Aligned_cols=239 Identities=18% Similarity=0.301 Sum_probs=194.4
Q ss_pred CCCCCccccCCccccccc----------------------------CccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 3 NDRKSRFSINGKPIYHFM----------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~----------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
|.++..+++ ||+|+.+. ..|+|+||++++..+++++|+++++++++.++++
T Consensus 97 G~~v~~~~~-Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~ 175 (393)
T cd08246 97 GEGVKNWKV-GDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLV 175 (393)
T ss_pred CCCCCcCCC-CCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhhccc
Confidence 566677777 88887543 2489999999999999999999999999999999
Q ss_pred hhhhhhHHHhh--cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCC-----
Q 025257 55 VPTGLGAVWNT--AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD----- 126 (255)
Q Consensus 55 ~~ta~~~l~~~--~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~----- 126 (255)
+.|||+++... .+++++++|+|+|+ |++|++++++++.+|+ +++++++++++.+.++++|++.++++++.+
T Consensus 176 ~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~ 254 (393)
T cd08246 176 GATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVL 254 (393)
T ss_pred HHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCCEEEccccccccccc
Confidence 99999987654 68999999999997 9999999999999999 888999999999999999999988865310
Q ss_pred ---------------chHHHHHHhhcCC--CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc
Q 025257 127 ---------------KPIQQVLVDLTDG--GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT 189 (255)
Q Consensus 127 ---------------~~~~~~i~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~ 189 (255)
..+.+.+.+.+++ ++|+++|++|... +...+++++++ |+++.+|.... ...+++...+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~l~~ 331 (393)
T cd08246 255 PDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRAT-FPTSVFVCDRG-GMVVICAGTTG-YNHTYDNRYLWM 331 (393)
T ss_pred ccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHh-HHHHHHHhccC-CEEEEEcccCC-CCCCCcHHHHhh
Confidence 1356677777776 6999999999865 89999999996 99999987532 223344444444
Q ss_pred -CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCC-Cee-EEEE
Q 025257 190 -GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG-DCL-RCVL 251 (255)
Q Consensus 190 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~-k~vi 251 (255)
+.++.++..... +.+.+++++++++.+.+ .+.++|+++++++|++.+.++ +.. |+++
T Consensus 332 ~~~~i~g~~~~~~---~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~a~~~~~~~~~~~gkvvv 391 (393)
T cd08246 332 RQKRIQGSHFAND---REAAEANRLVMKGRIDP--CLSKVFSLDETPDAHQLMHRNQHHVGNMAV 391 (393)
T ss_pred heeEEEecccCcH---HHHHHHHHHHHcCCcee--eeeEEEeHHHHHHHHHHHHhCccccceEEE
Confidence 777777654432 57888999999998653 366889999999999999877 555 8776
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=212.54 Aligned_cols=226 Identities=31% Similarity=0.487 Sum_probs=190.0
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|++|+.++.+.++++|+++++++++.++.+++|||+++.....++++++|||+|+|++|++++++|+..|+.+++++
T Consensus 139 ~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~ 218 (367)
T cd08263 139 MGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAV 218 (367)
T ss_pred CCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence 48999999999999999999999999999999999999998888888999999999889999999999999999339989
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 180 (255)
+.++++.+.++++|++.++++++ .++.+.+++.+++ ++|+++|++++.......+++++++ |+++.+|........
T Consensus 219 ~~s~~~~~~~~~~g~~~v~~~~~--~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~ 295 (367)
T cd08263 219 DVRDEKLAKAKELGATHTVNAAK--EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATA 295 (367)
T ss_pred eCCHHHHHHHHHhCCceEecCCc--ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCcc
Confidence 88999999999999999999887 7888888888766 8999999999974489999999996 999999875432233
Q ss_pred ccCchhh-ccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEe
Q 025257 181 STRPFQL-VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 181 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
.++...+ .++.++.++... ...+.+++++++++++.+.+...+.+.|+++++.+|++.+.+++.. |+|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 367 (367)
T cd08263 296 EIPITRLVRRGIKIIGSYGA--RPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367 (367)
T ss_pred ccCHHHHhhCCeEEEecCCC--CcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence 4555555 347777775321 1235788899999999977655566789999999999999887755 88874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=210.09 Aligned_cols=243 Identities=24% Similarity=0.372 Sum_probs=199.5
Q ss_pred CCCCCccccCCccccc---------------------------ccCccceeeEEEEcCC--ceEEcCCCCCccccccccc
Q 025257 3 NDRKSRFSINGKPIYH---------------------------FMGTSTFSQYTVVHDV--SVAKIDPQAPLDKVCLLGC 53 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~---------------------------~~~~g~~ae~~~v~~~--~~~~~p~~~~~~~aa~~~~ 53 (255)
|+++..+++ ||+|++ +.++|+|++|++++.. +++++|++++.++++.++.
T Consensus 70 G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~ 148 (345)
T cd08260 70 GEDVSRWRV-GDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGC 148 (345)
T ss_pred CCCCccCCC-CCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhcc
Confidence 556666777 888864 3346999999999985 8999999999999999999
Q ss_pred chhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHH
Q 025257 54 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVL 133 (255)
Q Consensus 54 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i 133 (255)
+++|||+++.+..++.++++|+|+|+|++|++++++|+..|+ +|+++++++++.+.++++|++.++++++ +.++.+.+
T Consensus 149 ~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~ 226 (345)
T cd08260 149 RFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE-VEDVAAAV 226 (345)
T ss_pred chHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEcccc-chhHHHHH
Confidence 999999998888899999999999999999999999999999 9999999999999999999999998763 24677777
Q ss_pred HhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCc-cccCchhh-ccCcEEEEeeeCCCCccCcHHHHH
Q 025257 134 VDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE-ISTRPFQL-VTGRVWKGTAFGGFKSRSQVPWLV 211 (255)
Q Consensus 134 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ 211 (255)
.+...+++|++|||+|+...+...+++++++ |+++.+|....... ..++...+ .++.++.++... ..+.+++++
T Consensus 227 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 302 (345)
T cd08260 227 RDLTGGGAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGM---PAHRYDAML 302 (345)
T ss_pred HHHhCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcC---CHHHHHHHH
Confidence 7766558999999999755589999999997 99999987543221 34444444 347788776532 235788999
Q ss_pred HHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEe
Q 025257 212 DKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
++++++.+.+.+.+.+.++++++++|++.+..++.. |+|++
T Consensus 303 ~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~ 344 (345)
T cd08260 303 ALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT 344 (345)
T ss_pred HHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence 999999877655466789999999999999887766 88764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=209.32 Aligned_cols=242 Identities=16% Similarity=0.209 Sum_probs=204.8
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
.|+++.++++ ||+|++....|+|++|++++...++++|+++++++++.+++.+.+||+++.....+.++++|+|+|+ |
T Consensus 71 ~G~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~ 149 (323)
T cd05282 71 VGSGVSGLLV-GQRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANS 149 (323)
T ss_pred eCCCCCCCCC-CCEEEEeCCCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEccccc
Confidence 3667778888 9999987546999999999999999999999999999999999999999888888999999999987 8
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALE 159 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~ 159 (255)
.+|++++++|+.+|+ +++++++++++.+.++++|++.++++++ .++.+.+.+.+++ ++|+++||+|+.. ....++
T Consensus 150 ~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~ 225 (323)
T cd05282 150 AVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP--EDLAQRVKEATGGAGARLALDAVGGES-ATRLAR 225 (323)
T ss_pred HHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc--hhHHHHHHHHhcCCCceEEEECCCCHH-HHHHHH
Confidence 999999999999999 9999999999999999999999998876 6788888888877 9999999999987 778899
Q ss_pred HhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCc-------cCcHHHHHHHHHcCCCCCCCcceeeeec
Q 025257 160 CCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKS-------RSQVPWLVDKYMKKEIKVDEYVTHNMTL 231 (255)
Q Consensus 160 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (255)
+++++ |+++.+|..... +..++...+. ++.++.++....+.. .+.+.++++++.++.+.+. +.++|++
T Consensus 226 ~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~ 301 (323)
T cd05282 226 SLRPG-GTLVNYGLLSGE-PVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTP--VGAKFPL 301 (323)
T ss_pred hhCCC-CEEEEEccCCCC-CCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccC--ccceecH
Confidence 99996 999999876432 3455556666 588888887655421 1346778888989986543 5678999
Q ss_pred chHHHHHHHhhCCCee-EEEEe
Q 025257 232 GEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 232 ~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
+++++|++.+.++... |++++
T Consensus 302 ~~~~~a~~~~~~~~~~~kvv~~ 323 (323)
T cd05282 302 EDFEEAVAAAEQPGRGGKVLLT 323 (323)
T ss_pred HHHHHHHHHHhcCCCCceEeeC
Confidence 9999999999877666 88763
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=194.55 Aligned_cols=242 Identities=19% Similarity=0.268 Sum_probs=196.0
Q ss_pred CCCCCCccccCCccccccc-CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-
Q 025257 2 MNDRKSRFSINGKPIYHFM-GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL- 79 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~-~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~- 79 (255)
+|+++.+|++ ||.|.... +.|+|++|.+.+++.++++++.++++.||.+..+.+|||+.|.....+++||+|+-.|+
T Consensus 92 vGs~vkgfk~-Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNgan 170 (354)
T KOG0025|consen 92 VGSNVKGFKP-GDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGAN 170 (354)
T ss_pred ecCCcCccCC-CCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcc
Confidence 4788999999 99998654 45999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcEEeCCCCCCchHHHHHHhh-cCC-CccEEEecCCcHHH
Q 025257 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEFVNPKDHDKPIQQVLVDL-TDG-GVDYSFECIGNVSV 153 (255)
Q Consensus 80 g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~i~~~-~~~-~~d~v~d~~g~~~~ 153 (255)
+++|++.+|+|+++|+ +-+.+.|+....+.+ +.+||++||...+ -. .....+. ... .+.+.|||+|+..
T Consensus 171 S~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~Lk~lGA~~ViTeee--l~-~~~~~k~~~~~~~prLalNcVGGks- 245 (354)
T KOG0025|consen 171 SGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQLKSLGATEVITEEE--LR-DRKMKKFKGDNPRPRLALNCVGGKS- 245 (354)
T ss_pred cHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHHHHcCCceEecHHH--hc-chhhhhhhccCCCceEEEeccCchh-
Confidence 9999999999999999 999998888776665 5699999986543 11 1122222 223 7999999999998
Q ss_pred HHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCcc--------CcHHHHHHHHHcCCCCCCCc
Q 025257 154 MRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSR--------SQVPWLVDKYMKKEIKVDEY 224 (255)
Q Consensus 154 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 224 (255)
...+.+.|.+| |+.+.+|.. +..+.+.+...+.. ++.++|+++..|... +.+.++.++++.|++..++.
T Consensus 246 a~~iar~L~~G-gtmvTYGGM-SkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~ 323 (354)
T KOG0025|consen 246 ATEIARYLERG-GTMVTYGGM-SKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNC 323 (354)
T ss_pred HHHHHHHHhcC-ceEEEecCc-cCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccc
Confidence 78899999997 999999996 45788888777666 999999999988743 23567889999999876543
Q ss_pred ceeeeecchHHHHHHHhhCCC--eeEEEEec
Q 025257 225 VTHNMTLGEINEAFRYMHGGD--CLRCVLKM 253 (255)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~~~--~~k~vi~~ 253 (255)
...+|.+...|++...+.. ..|-++.+
T Consensus 324 --e~v~L~~~~tald~~L~~~~~~~Kq~i~~ 352 (354)
T KOG0025|consen 324 --EKVPLADHKTALDAALSKFGKSGKQIIVL 352 (354)
T ss_pred --eeeechhhhHHHHHHHHHhccCCceEEEe
Confidence 4678999888888554332 23444443
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=208.47 Aligned_cols=242 Identities=24% Similarity=0.369 Sum_probs=200.0
Q ss_pred CCCCCCccccCCccccccc----------------------------CccceeeEEEEcCC--ceEEcCCCCCccccccc
Q 025257 2 MNDRKSRFSINGKPIYHFM----------------------------GTSTFSQYTVVHDV--SVAKIDPQAPLDKVCLL 51 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~----------------------------~~g~~ae~~~v~~~--~~~~~p~~~~~~~aa~~ 51 (255)
.|+++..+++ ||+|+..+ .+|+|+||+.++.. .++++|++++.++++.+
T Consensus 69 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l 147 (345)
T cd08286 69 VGSAVTNFKV-GDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVML 147 (345)
T ss_pred eccCccccCC-CCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhc
Confidence 3566777888 99887542 13899999999987 89999999999999999
Q ss_pred ccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHH
Q 025257 52 GCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 131 (255)
Q Consensus 52 ~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~ 131 (255)
+++++|||+++....+++++++|||+|+|++|++++|+++.+|+.+|+++++++++.+.++++|++.++++.+ .++.+
T Consensus 148 ~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~ 225 (345)
T cd08286 148 SDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK--GDAIE 225 (345)
T ss_pred cchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecccc--ccHHH
Confidence 9999999998778889999999999988999999999999999338999888888989999999999999886 77888
Q ss_pred HHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcHHH
Q 025257 132 VLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPW 209 (255)
Q Consensus 132 ~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~ 209 (255)
.+.+.+++ ++|++|||+|....++.+++.++++ |+++.+|.... ..+++...++ ++.++.+.... ...+.+
T Consensus 226 ~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 298 (345)
T cd08286 226 QVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHGK--PVDLHLEKLWIKNITITTGLVD----TNTTPM 298 (345)
T ss_pred HHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEEEecccCC--CCCcCHHHHhhcCcEEEeecCc----hhhHHH
Confidence 88888777 8999999999877689999999997 99999987432 2344555533 48888765321 145788
Q ss_pred HHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCC---CeeEEEEec
Q 025257 210 LVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG---DCLRCVLKM 253 (255)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~k~vi~~ 253 (255)
++++++++.+.+.+.+.++|+++++++|++.+... ...|++|++
T Consensus 299 ~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 299 LLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred HHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 99999999977666567899999999999998865 345999864
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=207.66 Aligned_cols=238 Identities=26% Similarity=0.431 Sum_probs=196.6
Q ss_pred CCCCCccccCCccccc---------------------------ccCccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYH---------------------------FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~---------------------------~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++..|++ ||+|+. +...|+|++|+.++++ ++++|+++++++++++ ..+
T Consensus 69 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~ 145 (337)
T cd08261 69 GEGVAGLKV-GDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPL 145 (337)
T ss_pred CCCCCCCCC-CCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chH
Confidence 556667888 999985 2236899999999999 9999999999998877 478
Q ss_pred hhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHh
Q 025257 56 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
+++++++ ...+++++++|||+|+|.+|.+++|+|+.+|+ +|+++++++++.+.++++|+++++++++ .++.+.+.+
T Consensus 146 ~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~--~~~~~~l~~ 221 (337)
T cd08261 146 AIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD--EDVAARLRE 221 (337)
T ss_pred HHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcc--cCHHHHHHH
Confidence 8898876 78899999999999889999999999999999 9999999999999999999999999887 778888888
Q ss_pred hcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHH
Q 025257 136 LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDK 213 (255)
Q Consensus 136 ~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ 213 (255)
.+++ ++|+++|++|+...+...+++++++ |+++.+|.... ...++...+.. ++++.+.. ....+.+++++++
T Consensus 222 ~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l 295 (337)
T cd08261 222 LTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKG--PVTFPDPEFHKKELTILGSR---NATREDFPDVIDL 295 (337)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEcCCCC--CCccCHHHHHhCCCEEEEec---cCChhhHHHHHHH
Confidence 8777 8999999998866689999999996 99999987542 23334334443 77777653 2233578899999
Q ss_pred HHcCCCCCCCcceeeeecchHHHHHHHhhCC-Cee-EEEEec
Q 025257 214 YMKKEIKVDEYVTHNMTLGEINEAFRYMHGG-DCL-RCVLKM 253 (255)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~-k~vi~~ 253 (255)
++++.+.+.+.+..+++++++++|++.+.++ ... |+|+++
T Consensus 296 ~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~ 337 (337)
T cd08261 296 LESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337 (337)
T ss_pred HHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 9999977633466789999999999999877 355 999875
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=207.09 Aligned_cols=241 Identities=19% Similarity=0.196 Sum_probs=199.9
Q ss_pred CCCCCccccCCcccccccC--ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-
Q 025257 3 NDRKSRFSINGKPIYHFMG--TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL- 79 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~--~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~- 79 (255)
|+++..+++ ||+|++... .|+|++|+.++..+++++|+++++++++.++++++||| ++....+++++++|+|+|+
T Consensus 75 G~~v~~~~~-Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~ 152 (324)
T cd08244 75 GPGVDPAWL-GRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAA 152 (324)
T ss_pred CCCCCCCCC-CCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCC
Confidence 556667887 999987652 69999999999999999999999999999999999995 5678889999999999996
Q ss_pred ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHH
Q 025257 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAAL 158 (255)
Q Consensus 80 g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~ 158 (255)
|++|++++++|+.+|+ +|+++++++++.+.++++|++.++++++ .++.+.+.+.+++ ++|+++|++|++. ....+
T Consensus 153 ~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~ 228 (324)
T cd08244 153 GGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVAVDYTR--PDWPDQVREALGGGGVTVVLDGVGGAI-GRAAL 228 (324)
T ss_pred chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEecCC--ccHHHHHHHHcCCCCceEEEECCChHh-HHHHH
Confidence 9999999999999999 9999999999999999999988888876 7888888887777 8999999999987 79999
Q ss_pred HHhccCCceEEEEccCCCCCccccCchh-hccCcEEEEeeeCCCCc---cCcHHHHHHHHHcCCCCCCCcceeeeecchH
Q 025257 159 ECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEI 234 (255)
Q Consensus 159 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (255)
++++.+ |+++.+|..... ...++... +.++.++.++....... .+.+.++++++.++.+.. .+..+|+++++
T Consensus 229 ~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~ 304 (324)
T cd08244 229 ALLAPG-GRFLTYGWASGE-WTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVP--VVGQTFPLERA 304 (324)
T ss_pred HHhccC-cEEEEEecCCCC-CCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccC--ccceEEeHHHH
Confidence 999996 999999875432 22444333 33488888776543321 245677888999988643 35678999999
Q ss_pred HHHHHHhhCCCee-EEEEec
Q 025257 235 NEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 235 ~~a~~~~~~~~~~-k~vi~~ 253 (255)
++|++.+.+++.. |+++++
T Consensus 305 ~~a~~~~~~~~~~~kvv~~~ 324 (324)
T cd08244 305 AEAHAALEARSTVGKVLLLP 324 (324)
T ss_pred HHHHHHHHcCCCCceEEEeC
Confidence 9999999887766 998864
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=207.80 Aligned_cols=240 Identities=15% Similarity=0.228 Sum_probs=191.0
Q ss_pred CCCCCCccccCCcccc---------------------------cccCccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 2 MNDRKSRFSINGKPIY---------------------------HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~---------------------------~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
.|+++..+++ ||+|+ ++..+|+|+||+.++...++++|+++++++++ +..+
T Consensus 68 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~ 145 (339)
T PRK10083 68 VGEGVDAARI-GERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEP 145 (339)
T ss_pred ECCCCccCCC-CCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhch
Confidence 3566677777 88886 33335899999999999999999999998876 4457
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVL 133 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~-~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i 133 (255)
+.++++ +....+++++++|+|+|+|++|++++|+++. +|+..++++++++++.+.++++|++.++++++ .++.+.+
T Consensus 146 ~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~~~~~~ 222 (339)
T PRK10083 146 FTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ--EPLGEAL 222 (339)
T ss_pred HHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc--ccHHHHH
Confidence 888886 5678899999999999999999999999996 69955788888899999999999999999876 6677766
Q ss_pred HhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcHHHHH
Q 025257 134 VDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLV 211 (255)
Q Consensus 134 ~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~ 211 (255)
... + ++|++||++|.+..+...+++++++ |+++.+|.... ...++...+. +++++.+... ..+.+++++
T Consensus 223 ~~~--g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 293 (339)
T PRK10083 223 EEK--GIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSE--PSEIVQQGITGKELSIFSSRL----NANKFPVVI 293 (339)
T ss_pred hcC--CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC--CceecHHHHhhcceEEEEEec----ChhhHHHHH
Confidence 432 3 6789999999776699999999997 99999987542 2233333333 3666666542 235789999
Q ss_pred HHHHcCCCCCCCcceeeeecchHHHHHHHhhCC-Ce-eEEEEecCC
Q 025257 212 DKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG-DC-LRCVLKMQD 255 (255)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~-~k~vi~~~~ 255 (255)
++++++.+.+.+++.++|+++++++|++.+.++ .. .|+++.+.+
T Consensus 294 ~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~ 339 (339)
T PRK10083 294 DWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE 339 (339)
T ss_pred HHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 999999987655567899999999999998754 34 499998864
|
|
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=208.63 Aligned_cols=242 Identities=21% Similarity=0.312 Sum_probs=197.9
Q ss_pred CCCCCCccccCCccccccc---------------------------CccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 2 MNDRKSRFSINGKPIYHFM---------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~---------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
.|+++..+++ ||+|+++. ..|++++|+.++.+.++++|+++++++++.+++.
T Consensus 81 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~ 159 (350)
T cd08240 81 VGPDAADVKV-GDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACS 159 (350)
T ss_pred eCCCCCCCCC-CCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhch
Confidence 3666777888 99987652 3589999999999999999999999999999999
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
+.|||+++.....++++++|+|+|+|++|++++|+|+..|+.+|+++++++++.+.++++|++.+++.++ .++.+.+.
T Consensus 160 ~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~ 237 (350)
T cd08240 160 GLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSD--PDAAKRII 237 (350)
T ss_pred hhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCC--ccHHHHHH
Confidence 9999999877777778999999988999999999999999967888888999999999999988888876 67777777
Q ss_pred hhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCccCcHHHHHHHH
Q 025257 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKY 214 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 214 (255)
+..++++|++||++|.+..+..++++++++ |+++.+|........+.... .+++.++.++..... +++.++++++
T Consensus 238 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~~~---~~~~~~~~ll 312 (350)
T cd08240 238 KAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGGEATLPLPLL-PLRALTIQGSYVGSL---EELRELVALA 312 (350)
T ss_pred HHhCCCCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCCCCcccHHHH-hhcCcEEEEcccCCH---HHHHHHHHHH
Confidence 766558999999999766699999999997 99999987643222222221 224778877664432 5788899999
Q ss_pred HcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 215 MKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
+++.+.+. ....|+++++++|++.+.+++.. |+++++
T Consensus 313 ~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 350 (350)
T cd08240 313 KAGKLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLKP 350 (350)
T ss_pred HcCCCccc--eeeEEcHHHHHHHHHHHHcCCccceEEecC
Confidence 99987643 45689999999999999887765 988753
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=207.09 Aligned_cols=239 Identities=26% Similarity=0.393 Sum_probs=196.1
Q ss_pred CCCCCccccCCccccccc---------------------------CccceeeEEEEcCCc-----eEEcCCCCCcccccc
Q 025257 3 NDRKSRFSINGKPIYHFM---------------------------GTSTFSQYTVVHDVS-----VAKIDPQAPLDKVCL 50 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---------------------------~~g~~ae~~~v~~~~-----~~~~p~~~~~~~aa~ 50 (255)
|+++..+++ ||+|+++. ..|+|++|+.++.+. ++++|+++++++++.
T Consensus 69 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~ 147 (343)
T cd08235 69 GDGVTGFKV-GDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAAL 147 (343)
T ss_pred CCCCCCCCC-CCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHh
Confidence 556677888 99998652 358999999999998 999999999999877
Q ss_pred cccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCe-EEEEcCCcchHHHHHhcCCcEEeCCCCCCchH
Q 025257 51 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR-VIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPI 129 (255)
Q Consensus 51 ~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~-v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~ 129 (255)
+ .++.+||+++. ..+++++++|+|+|+|.+|++++|+|+..|+ + |+++++++++.+.++++|+++++++++ .++
T Consensus 148 ~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~-~~v~~~~~s~~~~~~~~~~g~~~~~~~~~--~~~ 222 (343)
T cd08235 148 V-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGA-RKVIVSDLNEFRLEFAKKLGADYTIDAAE--EDL 222 (343)
T ss_pred h-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHhCCcEEecCCc--cCH
Confidence 6 68899999884 4589999999999889999999999999999 7 889999999999999999999999887 788
Q ss_pred HHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcH
Q 025257 130 QQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQV 207 (255)
Q Consensus 130 ~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~ 207 (255)
.+.+++.+++ ++|+++||+++...+...+++++++ |+++.+|.........++..... ++.++.++... ..+.+
T Consensus 223 ~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~ 298 (343)
T cd08235 223 VEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITITGSYAA---SPEDY 298 (343)
T ss_pred HHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEeccCCCCCcccCHHHHhhCceEEEEEecC---ChhhH
Confidence 8888888877 8999999999775589999999996 99999987543222333333333 37777665432 23578
Q ss_pred HHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEe
Q 025257 208 PWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
+.++++++++.+.+.+.+..+|+++++++|++.+.+++ . |+|++
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~ 343 (343)
T cd08235 299 KEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT 343 (343)
T ss_pred HHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence 88999999998765444567899999999999998877 6 98874
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=207.60 Aligned_cols=220 Identities=24% Similarity=0.354 Sum_probs=182.4
Q ss_pred CccceeeEEEEcCC-ceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEE
Q 025257 21 GTSTFSQYTVVHDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI 99 (255)
Q Consensus 21 ~~g~~ae~~~v~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~ 99 (255)
..|+|+||+.++++ .++++|+++++++++++ .+++|+|+++ +..+++++++|+|.|+|++|++++++|+.+|+..++
T Consensus 126 ~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~ 203 (350)
T cd08256 126 VNGGMAEYMRFPKEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLI 203 (350)
T ss_pred CCCcceeeEEcccccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 35899999999988 57899999999999888 7899999987 788999999999977799999999999999985678
Q ss_pred EEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCC
Q 025257 100 GIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 178 (255)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~ 178 (255)
++++++++.+.++++|++.++++++ .++.+.+.+.+++ ++|++||++|++..+...+++++++ |+++.+|.....
T Consensus 204 ~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~- 279 (350)
T cd08256 204 VLDLKDERLALARKFGADVVLNPPE--VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVEFSVFGDP- 279 (350)
T ss_pred EEcCCHHHHHHHHHcCCcEEecCCC--cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEccCCCC-
Confidence 8888889999899999999998876 7888888888877 8999999999765588999999996 999999875422
Q ss_pred ccccCchhh--ccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEE
Q 025257 179 EISTRPFQL--VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 179 ~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi 251 (255)
..++...+ .++.++.++.... ..+.+++++++++.+++.+.+.++|+++++++|++.+.+++.. |+++
T Consensus 280 -~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~ 350 (350)
T cd08256 280 -VTVDWSIIGDRKELDVLGSHLGP----YCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350 (350)
T ss_pred -CccChhHhhcccccEEEEeccCc----hhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence 22333322 2366777765432 3688899999999987654467899999999999999877755 8874
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=207.15 Aligned_cols=244 Identities=18% Similarity=0.257 Sum_probs=200.1
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
+|.++.++++ ||+|+++..+|+|++|++++.++++++|++++.++++.++.++.|||+++.+...++++++|+|+|+ |
T Consensus 73 vG~~v~~~~~-Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g 151 (334)
T PTZ00354 73 VGSDVKRFKE-GDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGAS 151 (334)
T ss_pred eCCCCCCCCC-CCEEEEecCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence 3566777888 9999987667999999999999999999999999999999999999999888889999999999996 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCch-HHHHHHhhcCC-CccEEEecCCcHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP-IQQVLVDLTDG-GVDYSFECIGNVSVMRAAL 158 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~ 158 (255)
++|++++++++..|+ +++++++++++.+.++++|++.++++.. .+ +.+.+.+.+++ ++|+++|++++.. +...+
T Consensus 152 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~ 227 (334)
T PTZ00354 152 GVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILIRYPD--EEGFAPKVKKLTGEKGVNLVLDCVGGSY-LSETA 227 (334)
T ss_pred hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC--hhHHHHHHHHHhCCCCceEEEECCchHH-HHHHH
Confidence 999999999999999 8888888999999999999988888765 54 77888888876 8999999998766 89999
Q ss_pred HHhccCCceEEEEccCCCCCccc-cCchhhcc-CcEEEEeeeCCCCcc-------CcHHHHHHHHHcCCCCCCCcceeee
Q 025257 159 ECCHKGWGTSVIVGVAASGQEIS-TRPFQLVT-GRVWKGTAFGGFKSR-------SQVPWLVDKYMKKEIKVDEYVTHNM 229 (255)
Q Consensus 159 ~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~~-~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (255)
++++++ |+++.+|..... ... ++...+.. +.++.++........ +.+++++++++++.+.+ .+.+++
T Consensus 228 ~~l~~~-g~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~ 303 (334)
T PTZ00354 228 EVLAVD-GKWIVYGFMGGA-KVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKP--IVDRTY 303 (334)
T ss_pred HHhccC-CeEEEEecCCCC-cccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccC--ccccEE
Confidence 999996 999999864322 222 44444444 568888765442211 22467788888888654 356789
Q ss_pred ecchHHHHHHHhhCCCee-EEEEecC
Q 025257 230 TLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
++++++++++.+.+++.. |+++.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~kvvv~~~ 329 (334)
T PTZ00354 304 PLEEVAEAHTFLEQNKNIGKVVLTVN 329 (334)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEecC
Confidence 999999999998877655 9998764
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-29 Score=209.28 Aligned_cols=224 Identities=29% Similarity=0.389 Sum_probs=184.9
Q ss_pred ccceeeEEEEcCC--ceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEE
Q 025257 22 TSTFSQYTVVHDV--SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI 99 (255)
Q Consensus 22 ~g~~ae~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~ 99 (255)
.|+|+||++++.+ .++++|++++++++++++.+++|||+++ ...+++++++|||+|+|++|++++++|+..|+.+|+
T Consensus 135 ~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi 213 (386)
T cd08283 135 AGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVI 213 (386)
T ss_pred CCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 5899999999988 8999999999999999999999999998 888999999999998899999999999999984599
Q ss_pred EEcCCcchHHHHHhcCCcEEeCCCCCCc-hHHHHHHhhcCC-CccEEEecCCcH---------------------HHHHH
Q 025257 100 GIDIDPKKFDRAKNFGVTEFVNPKDHDK-PIQQVLVDLTDG-GVDYSFECIGNV---------------------SVMRA 156 (255)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~-~~~~~i~~~~~~-~~d~v~d~~g~~---------------------~~~~~ 156 (255)
++++++++.+.+++++...++++.+ . ++.+.+.+.+++ ++|++||++|+. ..++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~vi~~~~--~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (386)
T cd08283 214 AIDRVPERLEMARSHLGAETINFEE--VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALRE 291 (386)
T ss_pred EEcCCHHHHHHHHHcCCcEEEcCCc--chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHH
Confidence 9999999999999984446777765 5 488888888877 899999999753 34789
Q ss_pred HHHHhccCCceEEEEccCCCCCccccCchh-hccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHH
Q 025257 157 ALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEIN 235 (255)
Q Consensus 157 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (255)
++++++++ |+++.+|..... ...++... +.++.++.+.... ..+.+.+++++++++.+.+.+++.++|++++++
T Consensus 292 ~~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~ 366 (386)
T cd08283 292 AIQAVRKG-GTVSIIGVYGGT-VNKFPIGAAMNKGLTLRMGQTH---VQRYLPRLLELIESGELDPSFIITHRLPLEDAP 366 (386)
T ss_pred HHHHhccC-CEEEEEcCCCCC-cCccCHHHHHhCCcEEEeccCC---chHHHHHHHHHHHcCCCChhHceEEEecHHHHH
Confidence 99999997 999999876432 23344423 3347788776422 235788999999999987665566889999999
Q ss_pred HHHHHhhCCC-e-eEEEEec
Q 025257 236 EAFRYMHGGD-C-LRCVLKM 253 (255)
Q Consensus 236 ~a~~~~~~~~-~-~k~vi~~ 253 (255)
+|++.+.+++ . +|++|++
T Consensus 367 ~a~~~~~~~~~~~~k~~~~~ 386 (386)
T cd08283 367 EAYKIFDKKEDGCIKVVLKP 386 (386)
T ss_pred HHHHHHHhCCCCeEEEEecC
Confidence 9999987765 4 4999864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=206.15 Aligned_cols=239 Identities=19% Similarity=0.347 Sum_probs=188.9
Q ss_pred CCCCCc-cccCCccccccc-----------------CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHh
Q 025257 3 NDRKSR-FSINGKPIYHFM-----------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 64 (255)
Q Consensus 3 g~~~~~-~~~~g~~v~~~~-----------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~ 64 (255)
|.++.. +++ ||+|+++. ..|+|+||++++.+.++++|+++++++++ ++.++++||++ ..
T Consensus 79 G~~v~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~ 155 (341)
T cd08262 79 GPGTERKLKV-GTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHA-VR 155 (341)
T ss_pred CCCCcCCCCC-CCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHH-HH
Confidence 555665 888 99998762 36999999999999999999999999877 56688999998 48
Q ss_pred hcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHH---HHHhhcCC-C
Q 025257 65 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ---VLVDLTDG-G 140 (255)
Q Consensus 65 ~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~---~i~~~~~~-~ 140 (255)
..+++++++|||+|+|++|.+++|+++.+|+..++++++++++.+.++++|+++++++++ .+..+ .+...+.+ +
T Consensus 156 ~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~ 233 (341)
T cd08262 156 RARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAA--DSPFAAWAAELARAGGPK 233 (341)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCC--cCHHHHHHHHHHHhCCCC
Confidence 889999999999988999999999999999945777777889999999999988998775 42221 34444555 8
Q ss_pred ccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchh-hccCcEEEEeeeCCCCccCcHHHHHHHHHcCCC
Q 025257 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEI 219 (255)
Q Consensus 141 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 219 (255)
+|+++|++|++..+...+++++++ |+++.+|....... +.... +.++.++.++... ..+.+++++++++++.+
T Consensus 234 ~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~g~i 307 (341)
T cd08262 234 PAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGVCMESDN--IEPALAIRKELTLQFSLGY---TPEEFADALDALAEGKV 307 (341)
T ss_pred CCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCCc--cCHHHHhhcceEEEEEecc---cHHHHHHHHHHHHcCCC
Confidence 999999999864588999999996 99999987632221 22222 2346666654322 22478899999999998
Q ss_pred CCCCcceeeeecchHHHHHHHhhCCCee-EEEEe
Q 025257 220 KVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
.+.+.+.++|+++++++|++.+.+++.. |+|++
T Consensus 308 ~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~ 341 (341)
T cd08262 308 DVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD 341 (341)
T ss_pred ChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 7665667899999999999999887766 98874
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=205.16 Aligned_cols=241 Identities=25% Similarity=0.369 Sum_probs=194.1
Q ss_pred CCCCCCccccCCccccccc-------------------------------CccceeeEEEEcCC--ceEEcCCCCCcccc
Q 025257 2 MNDRKSRFSINGKPIYHFM-------------------------------GTSTFSQYTVVHDV--SVAKIDPQAPLDKV 48 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~-------------------------------~~g~~ae~~~v~~~--~~~~~p~~~~~~~a 48 (255)
+|.++..+++ ||+|++.. .+|+|++|++++++ .++++|++++++++
T Consensus 68 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a 146 (344)
T cd08284 68 VGPEVRTLKV-GDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAA 146 (344)
T ss_pred eCCCccccCC-CCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHh
Confidence 3566777888 89887642 14899999999975 99999999999999
Q ss_pred cccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCch
Q 025257 49 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP 128 (255)
Q Consensus 49 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~ 128 (255)
+.++.+++|||+++. ..+++++++|+|+|+|.+|++++++|+.+|+.+|+++++++++.+.++++|+. +++.+. .+
T Consensus 147 ~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~--~~ 222 (344)
T cd08284 147 LLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINFED--AE 222 (344)
T ss_pred hhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEecCC--cC
Confidence 999999999999874 57899999999998899999999999999964788998888899888999975 466665 67
Q ss_pred HHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchh-hccCcEEEEeeeCCCCccCc
Q 025257 129 IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKSRSQ 206 (255)
Q Consensus 129 ~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 206 (255)
+.+.+.+.+++ ++|++||++++...+...+++++++ |+++.+|..... ........ +.++.++.+.. ....+.
T Consensus 223 ~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~ 297 (344)
T cd08284 223 PVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTAE-EFPFPGLDAYNKNLTLRFGR---CPVRSL 297 (344)
T ss_pred HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECcCCCC-CccccHHHHhhcCcEEEEec---CCcchh
Confidence 88888888776 8999999999876689999999996 999999976422 22233333 33477776442 123467
Q ss_pred HHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEe
Q 025257 207 VPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 252 (255)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~ 252 (255)
+.++++++.++.+.+.+.+.++|++++++++++.+.+++..|+|++
T Consensus 298 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~ 343 (344)
T cd08284 298 FPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD 343 (344)
T ss_pred HHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEec
Confidence 8999999999997765556678999999999998876655788875
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=205.22 Aligned_cols=219 Identities=28% Similarity=0.426 Sum_probs=180.2
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|++|++++++.++++|+++++++++.+ .++.+|++++ ...+++++++|+|+|+|++|++++|+|+.+|+..|+++
T Consensus 116 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~ 193 (343)
T cd05285 116 DGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVT 193 (343)
T ss_pred CCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 589999999999999999999999998877 4788999986 88999999999999889999999999999999338999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchH---HHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCC
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPI---QQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 177 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~---~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~ 177 (255)
++++++.+.++++|++.++++++ .++ .+.+.+.+++ ++|+++||+|....+...+++++++ |+++.+|.....
T Consensus 194 ~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~ 270 (343)
T cd05285 194 DIDPSRLEFAKELGATHTVNVRT--EDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKPE 270 (343)
T ss_pred CCCHHHHHHHHHcCCcEEecccc--ccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCC
Confidence 98999999999999999998876 553 7778887777 8999999999875589999999996 999999864321
Q ss_pred CccccCchhhc-cCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCC--eeEEEE
Q 025257 178 QEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD--CLRCVL 251 (255)
Q Consensus 178 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~k~vi 251 (255)
..++..... ++.++.++... .+.+.+++++++++.+.+.+.+.++|+++++.+|++.+.+++ .+|++|
T Consensus 271 --~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~ 341 (343)
T cd05285 271 --VTLPLSAASLREIDIRGVFRY----ANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI 341 (343)
T ss_pred --CccCHHHHhhCCcEEEEeccC----hHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence 233333333 36677665422 256888999999998765445667899999999999988764 369998
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=208.57 Aligned_cols=224 Identities=20% Similarity=0.305 Sum_probs=183.4
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHh--hcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRV 98 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v 98 (255)
.|+|+||++++..+++++|+++++++++.++.++.|||+++.. ..+++++++|+|+|+ |++|++++++++.+|+ ++
T Consensus 139 ~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~v 217 (398)
T TIGR01751 139 FGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NP 217 (398)
T ss_pred CccceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eE
Confidence 5899999999999999999999999999999999999998754 477899999999997 9999999999999999 88
Q ss_pred EEEcCCcchHHHHHhcCCcEEeCCCCCC--------------------chHHHHHHhhcCC-CccEEEecCCcHHHHHHH
Q 025257 99 IGIDIDPKKFDRAKNFGVTEFVNPKDHD--------------------KPIQQVLVDLTDG-GVDYSFECIGNVSVMRAA 157 (255)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~--------------------~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~ 157 (255)
+++++++++.+.++++|++.++|+++.+ ..+.+.+.+.+++ ++|++|||+|... +..+
T Consensus 218 i~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~-~~~~ 296 (398)
T TIGR01751 218 VAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRAT-FPTS 296 (398)
T ss_pred EEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHH-HHHH
Confidence 8888899999999999999999875410 1255667777776 8999999999765 8999
Q ss_pred HHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHH
Q 025257 158 LECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 236 (255)
Q Consensus 158 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (255)
+++++++ |+++.+|.... ....++...+.. +.++.++..... .++.+++++++++.+.. .+.++++++++++
T Consensus 297 ~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~--~~~~~~~l~~~~~ 369 (398)
T TIGR01751 297 VFVCRRG-GMVVICGGTTG-YNHDYDNRYLWMRQKRIQGSHFANL---REAWEANRLVAKGRIDP--TLSKVYPLEEIGQ 369 (398)
T ss_pred HHhhccC-CEEEEEccccC-CCCCcCHHHHhhcccEEEccccCcH---HHHHHHHHHHHCCCccc--ceeeEEcHHHHHH
Confidence 9999996 99999988643 223333333333 667776654332 45788999999998653 3668999999999
Q ss_pred HHHHhhCCCee-EEEEecC
Q 025257 237 AFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 237 a~~~~~~~~~~-k~vi~~~ 254 (255)
+++.+.++... |+|+++.
T Consensus 370 a~~~~~~~~~~gkvvv~~~ 388 (398)
T TIGR01751 370 AHQDVHRNHHQGNVAVLVL 388 (398)
T ss_pred HHHHHHcCCCCceEEEEeC
Confidence 99999877766 9998764
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=203.34 Aligned_cols=238 Identities=27% Similarity=0.383 Sum_probs=197.2
Q ss_pred CCCCCccccCCccccccc----------------------------CccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 3 NDRKSRFSINGKPIYHFM----------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~----------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
|+++..+++ ||+|+.++ ..|++++|+.++.+.++++|+++++++++.++..
T Consensus 72 G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~ 150 (341)
T cd08297 72 GPGVSGLKV-GDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCA 150 (341)
T ss_pred CCCCCCCCC-CCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcc
Confidence 556667777 88887531 2589999999999999999999999999999999
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVL 133 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i 133 (255)
+.|||+++.. .+++++++|||+|+ +.+|++++++++++|+ +|+++++++++.+.++++|++.++++++ .++.+.+
T Consensus 151 ~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~ 226 (341)
T cd08297 151 GVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVDFKK--SDDVEAV 226 (341)
T ss_pred hHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEcCCC--ccHHHHH
Confidence 9999998755 58999999999997 6799999999999999 9999999999999999999999999887 6888888
Q ss_pred HhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcHHHHH
Q 025257 134 VDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLV 211 (255)
Q Consensus 134 ~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~ 211 (255)
.+.+++ ++|+++|+.+....+...+++++++ |+++.+|.... ...+++...+. ++.++.+.... ..+.+++++
T Consensus 227 ~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 301 (341)
T cd08297 227 KELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPG-GFIPLDPFDLVLRGITIVGSLVG---TRQDLQEAL 301 (341)
T ss_pred HHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecCCCC-CCCCCCHHHHHhcccEEEEeccC---CHHHHHHHH
Confidence 888876 8999999887766689999999997 99999987542 22244444333 37788775432 136788999
Q ss_pred HHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 212 DKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++++.+.+ .+ .+|++++++++++.+..+... |+++++
T Consensus 302 ~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 302 EFAARGKVKP--HI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred HHHHcCCCcc--ee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 9999998754 34 579999999999999887766 999875
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=205.65 Aligned_cols=242 Identities=22% Similarity=0.318 Sum_probs=190.3
Q ss_pred CCCCCccccCCccccc---------------------------ccCccceeeEEEEcCCceEEcCCCC-------Ccccc
Q 025257 3 NDRKSRFSINGKPIYH---------------------------FMGTSTFSQYTVVHDVSVAKIDPQA-------PLDKV 48 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~---------------------------~~~~g~~ae~~~v~~~~~~~~p~~~-------~~~~a 48 (255)
|.++..|++ ||+|+. +..+|+|++|+++++..++++|+++ +.+ +
T Consensus 103 G~~v~~~~~-Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~ 180 (384)
T cd08265 103 GKNVKNFEK-GDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-A 180 (384)
T ss_pred CCCCCCCCC-CCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-H
Confidence 556667777 888863 3336899999999999999999863 444 5
Q ss_pred cccccchhhhhhHHHhh-cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCC-C
Q 025257 49 CLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH-D 126 (255)
Q Consensus 49 a~~~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~-~ 126 (255)
++++.++++||+++... .+++++++|+|+|+|++|++++|+|+.+|+.+|+++++++++.+.++++|+++++++++. .
T Consensus 181 a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~ 260 (384)
T cd08265 181 GALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRD 260 (384)
T ss_pred hhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEccccccc
Confidence 55666899999998666 789999999999889999999999999998669999988888888999999999987741 1
Q ss_pred chHHHHHHhhcCC-CccEEEecCCcH-HHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCc
Q 025257 127 KPIQQVLVDLTDG-GVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKS 203 (255)
Q Consensus 127 ~~~~~~i~~~~~~-~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~ 203 (255)
.++.+.+++.+++ ++|+|+|++|.+ ..+...+++++++ |+++.+|.... ..+++...+.. ..++.++.... .
T Consensus 261 ~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~l~~~~~~~--~ 335 (384)
T cd08265 261 CLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-GKIVYIGRAAT--TVPLHLEVLQVRRAQIVGAQGHS--G 335 (384)
T ss_pred ccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-CEEEEECCCCC--CCcccHHHHhhCceEEEEeeccC--C
Confidence 3788888888887 899999999973 3478999999996 99999986532 23333333333 66777764321 2
Q ss_pred cCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEE
Q 025257 204 RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 251 (255)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi 251 (255)
...+.+++++++++.+.+...+.++|+++++++|++.+.++...|+++
T Consensus 336 ~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~kvvv 383 (384)
T cd08265 336 HGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI 383 (384)
T ss_pred cchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEe
Confidence 246899999999999876555668899999999999976654448775
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=225.48 Aligned_cols=236 Identities=17% Similarity=0.207 Sum_probs=209.5
Q ss_pred CcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHH
Q 025257 13 GKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAK 91 (255)
Q Consensus 13 g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~ 91 (255)
|.||.+..+.-++|+.+.++.+++|.+|++.++++|+..|+.+.|||++|+.+++.++|+++||+++ |++|++++.+|.
T Consensus 1495 GrRvM~mvpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiAL 1574 (2376)
T KOG1202|consen 1495 GRRVMGMVPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIAL 1574 (2376)
T ss_pred CcEEEEeeehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHH
Confidence 6777777666789999999999999999999999999999999999999999999999999999965 999999999999
Q ss_pred HcCCCeEEEEcCCcchHHHHHhc----CCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCc
Q 025257 92 AAGASRVIGIDIDPKKFDRAKNF----GVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWG 166 (255)
Q Consensus 92 ~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G 166 (255)
+.|+ +|+.++.|.+|++++++. ..+++-|+++ .+|...+.+.|+| |+|+|++....+. ++.+++||+.. |
T Consensus 1575 a~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRd--tsFEq~vl~~T~GrGVdlVLNSLaeEk-LQASiRCLa~~-G 1649 (2376)
T KOG1202|consen 1575 AHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANSRD--TSFEQHVLWHTKGRGVDLVLNSLAEEK-LQASIRCLALH-G 1649 (2376)
T ss_pred HcCC-EEEEecCcHHHHHHHHHhchhhhhhccccccc--ccHHHHHHHHhcCCCeeeehhhhhHHH-HHHHHHHHHhc-C
Confidence 9999 999999999999999653 3567788888 9999999999999 9999999999888 99999999997 9
Q ss_pred eEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCc--cCcHHHHHHHHHcCCCC--CCCcceeeeecchHHHHHHHhh
Q 025257 167 TSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKS--RSQVPWLVDKYMKKEIK--VDEYVTHNMTLGEINEAFRYMH 242 (255)
Q Consensus 167 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~ 242 (255)
|+..+|..+-+...++.+..|+++.+++|..+..... .+.++++..++++|.-. ..|+.+++|+-.++++||+++.
T Consensus 1650 RFLEIGKfDLSqNspLGMavfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMa 1729 (2376)
T KOG1202|consen 1650 RFLEIGKFDLSQNSPLGMAVFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMA 1729 (2376)
T ss_pred eeeeecceecccCCcchhhhhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHh
Confidence 9999998877777778888888999999998766543 24567788888776432 5667778999999999999999
Q ss_pred CCCee-EEEEec
Q 025257 243 GGDCL-RCVLKM 253 (255)
Q Consensus 243 ~~~~~-k~vi~~ 253 (255)
+++++ |+|++.
T Consensus 1730 sGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1730 SGKHIGKVVIKV 1741 (2376)
T ss_pred ccCccceEEEEE
Confidence 99998 999986
|
|
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=204.24 Aligned_cols=236 Identities=22% Similarity=0.265 Sum_probs=190.9
Q ss_pred CCCCCCccccCCcccccc----------------c---CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHH
Q 025257 2 MNDRKSRFSINGKPIYHF----------------M---GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 62 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~----------------~---~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l 62 (255)
+|+++..|++ ||+|++. . .+|++++|+.++...++++|+++++++++.+++++.|||+++
T Consensus 92 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~ 170 (350)
T cd08274 92 VGEGVDTARI-GERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML 170 (350)
T ss_pred eCCCCCCCCC-CCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH
Confidence 3566777888 9999762 1 248999999999999999999999999999999999999987
Q ss_pred HhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-C
Q 025257 63 WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G 140 (255)
Q Consensus 63 ~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~ 140 (255)
...+++++++|||+|+ |++|++++++++.+|+ +++++++++ +.+.++++|++.+++..+ ....+ ...+.+ +
T Consensus 171 -~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~~~-~~~~~~~~g~~~~~~~~~--~~~~~--~~~~~~~~ 243 (350)
T cd08274 171 -ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAA-KEEAVRALGADTVILRDA--PLLAD--AKALGGEP 243 (350)
T ss_pred -hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCch-hhHHHHhcCCeEEEeCCC--ccHHH--HHhhCCCC
Confidence 7789999999999998 9999999999999999 898888665 888889999976666543 44433 445555 8
Q ss_pred ccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcHHHHHHHHHcCCC
Q 025257 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEI 219 (255)
Q Consensus 141 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 219 (255)
+|++||++|++. ++.++++++.+ |+++.+|.... ...+++...++ ++.++.++.... ...+.++++++.++.+
T Consensus 244 ~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l 317 (350)
T cd08274 244 VDVVADVVGGPL-FPDLLRLLRPG-GRYVTAGAIAG-PVVELDLRTLYLKDLTLFGSTLGT---REVFRRLVRYIEEGEI 317 (350)
T ss_pred CcEEEecCCHHH-HHHHHHHhccC-CEEEEecccCC-ccccCCHHHhhhcceEEEEeecCC---HHHHHHHHHHHHCCCc
Confidence 999999999876 99999999997 99999987532 22345555533 488888876532 3578899999999986
Q ss_pred CCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 220 KVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
.+ .+.++|+++++++|++.+..+... |+++++
T Consensus 318 ~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~ 350 (350)
T cd08274 318 RP--VVAKTFPLSEIREAQAEFLEKRHVGKLVLVP 350 (350)
T ss_pred cc--ccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 53 356789999999999999877665 988863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=201.08 Aligned_cols=237 Identities=27% Similarity=0.400 Sum_probs=195.7
Q ss_pred CCCCCccccCCccccc---------------------------ccCccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYH---------------------------FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~---------------------------~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++..+++ ||+|+. +...|+|++|+.++.+.++++|++++.++++.++.++
T Consensus 72 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~ 150 (338)
T cd08254 72 GAGVTNFKV-GDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAV 150 (338)
T ss_pred CCCCccCCC-CCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchH
Confidence 556667777 888864 1125899999999999999999999999999999999
Q ss_pred hhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHh
Q 025257 56 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
+|||+++.....++++++|||.|+|++|++++++|+..|+ +|+++++++++.+.++++|++++++.++ ....+.+ .
T Consensus 151 ~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~--~~~~~~~-~ 226 (338)
T cd08254 151 LTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLD--DSPKDKK-A 226 (338)
T ss_pred HHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCC--cCHHHHH-H
Confidence 9999998888889999999998889999999999999999 8999999999999999999988888776 6666666 4
Q ss_pred hcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHH
Q 025257 136 LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDK 213 (255)
Q Consensus 136 ~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ 213 (255)
.+.+ ++|+++||+|....++.++++++++ |+++.+|.... ...++...+.. +.++.++... ..+.+..++++
T Consensus 227 ~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l 300 (338)
T cd08254 227 AGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRD--KLTVDLSDLIARELRIIGSFGG---TPEDLPEVLDL 300 (338)
T ss_pred HhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCCCC--CCccCHHHHhhCccEEEEeccC---CHHHHHHHHHH
Confidence 5555 8999999999776699999999997 99999987532 22344444444 7777775432 23678899999
Q ss_pred HHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 214 YMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++.+.+. .+++++++++++++.+.+++.. |+++++
T Consensus 301 l~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 338 (338)
T cd08254 301 IAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLVP 338 (338)
T ss_pred HHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 999997654 4689999999999999888766 998864
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=204.43 Aligned_cols=242 Identities=19% Similarity=0.236 Sum_probs=196.8
Q ss_pred CCCCCccccCCccccccc-CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 3 NDRKSRFSINGKPIYHFM-GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~-~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
|+++..|++ ||+|++.. +.|+|++|+.++..+++++|+++++++++.+++++.|||+++.....++++++|||+|+ |
T Consensus 79 G~~v~~~~~-Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g 157 (341)
T cd08290 79 GSGVKSLKP-GDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANS 157 (341)
T ss_pred CCCCCCCCC-CCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchh
Confidence 556667888 99998764 36999999999999999999999999999999999999999877788999999999987 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCc----chHHHHHhcCCcEEeCCCCCCc---hHHHHHHhhcCCCccEEEecCCcHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDP----KKFDRAKNFGVTEFVNPKDHDK---PIQQVLVDLTDGGVDYSFECIGNVSV 153 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~----~~~~~~~~~g~~~vi~~~~~~~---~~~~~i~~~~~~~~d~v~d~~g~~~~ 153 (255)
++|++++|+|+..|+ +++++++++ ++.++++++|+++++++++ . ++.+.+...+++++|++|||+|+..
T Consensus 158 ~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~i~~~~~~~~d~vld~~g~~~- 233 (341)
T cd08290 158 AVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERLKALGADHVLTEEE--LRSLLATELLKSAPGGRPKLALNCVGGKS- 233 (341)
T ss_pred HHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHHHhcCCCEEEeCcc--cccccHHHHHHHHcCCCceEEEECcCcHh-
Confidence 999999999999999 888888766 6688888999999998775 4 6777777766557999999999987
Q ss_pred HHHHHHHhccCCceEEEEccCCCCCccccCchh-hccCcEEEEeeeCCCCc-------cCcHHHHHHHHHcCCCCCCCcc
Q 025257 154 MRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKS-------RSQVPWLVDKYMKKEIKVDEYV 225 (255)
Q Consensus 154 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 225 (255)
+...+++++++ |+++.+|.... ....++... +.++.++.+.....+.. ...+.++++++.++.+.+. .
T Consensus 234 ~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 309 (341)
T cd08290 234 ATELARLLSPG-GTMVTYGGMSG-QPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAP--P 309 (341)
T ss_pred HHHHHHHhCCC-CEEEEEeccCC-CCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCC--c
Confidence 77899999996 99999986432 223344433 44488998887543211 1247778899999987654 3
Q ss_pred eeee---ecchHHHHHHHhhCCCee-EEEEec
Q 025257 226 THNM---TLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 226 ~~~~---~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
..++ +++++++|++.+.++... |+|+++
T Consensus 310 ~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~ 341 (341)
T cd08290 310 VEKVTDDPLEEFKDALANALKGGGGGKQVLVM 341 (341)
T ss_pred ccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence 3456 999999999999877766 999864
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=200.97 Aligned_cols=242 Identities=23% Similarity=0.304 Sum_probs=190.9
Q ss_pred CCCCCccccCCccccc---------------------------ccCccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYH---------------------------FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~---------------------------~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++..|++ ||+|++ +...|+|++|++++++.++++|++++.+++ +++.++
T Consensus 71 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~ 148 (340)
T TIGR00692 71 GPGVEGIKV-GDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPL 148 (340)
T ss_pred CCCCCcCCC-CCEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchH
Confidence 566777888 999975 224589999999999999999999998655 466788
Q ss_pred hhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHh
Q 025257 56 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
.+|++++ ....+++++|+|.|+|++|.+++|+++.+|+..|+++++++++.+.++++|++.++++.+ .++.+.+.+
T Consensus 149 ~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~l~~ 224 (340)
T TIGR00692 149 GNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK--EDVVKEVAD 224 (340)
T ss_pred HHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc--cCHHHHHHH
Confidence 9999875 345789999999888999999999999999933888888888999899999988898876 788888888
Q ss_pred hcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCccCcHHHHHHHH
Q 025257 136 LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKY 214 (255)
Q Consensus 136 ~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 214 (255)
.+++ ++|+++||+|+...+...+++++++ |+++.+|........++....++++.++.++.. ....+.+.++++++
T Consensus 225 ~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 301 (340)
T TIGR00692 225 LTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITG--RHMFETWYTVSRLI 301 (340)
T ss_pred hcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCCCCcccchhhhhhhcceEEEEEec--CCchhhHHHHHHHH
Confidence 8776 8999999999876689999999996 999999875322122221112233667766542 11224578899999
Q ss_pred HcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 215 MKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
+++.+++.+.+.+.+++++++++++.+.++...|+|+++
T Consensus 302 ~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~ 340 (340)
T TIGR00692 302 QSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL 340 (340)
T ss_pred HcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 999987545567899999999999998876645998864
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=203.64 Aligned_cols=244 Identities=20% Similarity=0.235 Sum_probs=193.1
Q ss_pred CCCCCccccCCcccccc-cCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 3 NDRKSRFSINGKPIYHF-MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~-~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
|.++..+++ ||+|+.. .+.|+|++|+.++...++++|+++++++++.++..+.+||.++.....++++++|+|+|+ |
T Consensus 73 G~~v~~~~~-Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g 151 (327)
T PRK10754 73 GSGVKHIKV-GDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAG 151 (327)
T ss_pred CCCCCCCCC-CCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCc
Confidence 556677888 9999754 346899999999999999999999999999888899999999888889999999999976 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALE 159 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~ 159 (255)
.+|++++++++.+|+ +|+++++++++.++++++|++++++.++ .++.+.+++.+++ ++|+++||+++.. ....++
T Consensus 152 ~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~ 227 (327)
T PRK10754 152 GVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVINYRE--ENIVERVKEITGGKKVRVVYDSVGKDT-WEASLD 227 (327)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEcCCC--CcHHHHHHHHcCCCCeEEEEECCcHHH-HHHHHH
Confidence 999999999999999 9999999999999999999988998876 7888889988887 8999999999866 889999
Q ss_pred HhccCCceEEEEccCCCCCccccCchhhcc-CcEE-EEeee-CCCCcc----CcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 160 CCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVW-KGTAF-GGFKSR----SQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 160 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~-~g~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
+++++ |+++.+|..... ...++...+.+ +..+ ..... ...... +.+.++++++.++.+.+.....++|+++
T Consensus 228 ~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~ 305 (327)
T PRK10754 228 CLQRR-GLMVSFGNASGP-VTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKFPLK 305 (327)
T ss_pred HhccC-CEEEEEccCCCC-CCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHH
Confidence 99996 999999875421 11222222212 1111 00010 111111 2345678899999987554456789999
Q ss_pred hHHHHHHHhhCCCee-EEEEec
Q 025257 233 EINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 233 ~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
+++++++.+.++... |+||.+
T Consensus 306 ~~~~a~~~~~~~~~~~~~~~~~ 327 (327)
T PRK10754 306 DAQRAHEILESRATQGSSLLIP 327 (327)
T ss_pred HHHHHHHHHHcCCCcceEEEeC
Confidence 999999999887766 999863
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=200.96 Aligned_cols=242 Identities=24% Similarity=0.370 Sum_probs=194.0
Q ss_pred CCCCCccccCCccccccc---------------------------CccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYHFM---------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++..|++ ||+|+++. ..|+|++|++++++.++++|+++++++++.+ ..+
T Consensus 68 g~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~ 145 (343)
T cd08236 68 GSGVDDLAV-GDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPA 145 (343)
T ss_pred CCCCCcCCC-CCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chH
Confidence 556677888 99998752 3589999999999999999999999998887 578
Q ss_pred hhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHh
Q 025257 56 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
+|||+++. ..+++++++|+|+|+|.+|.+++|+|+.+|+.+|+++++++++.+.++++|++.++++++ .. .+.+.+
T Consensus 146 ~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~--~~-~~~~~~ 221 (343)
T cd08236 146 AVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE--ED-VEKVRE 221 (343)
T ss_pred HHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc--cc-HHHHHH
Confidence 99999874 788999999999988999999999999999933999999999999999999988998876 56 777777
Q ss_pred hcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcccc-Cchhh-ccCcEEEEeeeCCCC--ccCcHHHH
Q 025257 136 LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST-RPFQL-VTGRVWKGTAFGGFK--SRSQVPWL 210 (255)
Q Consensus 136 ~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~-~~~~~~~g~~~~~~~--~~~~~~~~ 210 (255)
..++ ++|+++||+|....+..++++++++ |+++.+|.......+.. +...+ .++.++.++...... ..+.++++
T Consensus 222 ~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (343)
T cd08236 222 LTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTA 300 (343)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHHHH
Confidence 7777 8999999998876689999999996 99999987542211111 22222 348888887653321 13567888
Q ss_pred HHHHHcCCCCCCCcceeeeecchHHHHHHHhhC-CCee-EEEE
Q 025257 211 VDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG-GDCL-RCVL 251 (255)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~-k~vi 251 (255)
.++++++.+.+.+.+..++++++++++++.+.+ +... |+|+
T Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 343 (343)
T cd08236 301 LDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343 (343)
T ss_pred HHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence 999999987644446678999999999999987 5545 8764
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=200.86 Aligned_cols=242 Identities=25% Similarity=0.349 Sum_probs=193.7
Q ss_pred CCCCCCccccCCccccc-cc--------------------------CccceeeEEEEcCC--ceEEcCCCCCccccc---
Q 025257 2 MNDRKSRFSINGKPIYH-FM--------------------------GTSTFSQYTVVHDV--SVAKIDPQAPLDKVC--- 49 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~-~~--------------------------~~g~~ae~~~v~~~--~~~~~p~~~~~~~aa--- 49 (255)
.|+++..+++ ||+|++ +. .+|+|+||+.++.+ .++++|++++++.+.
T Consensus 68 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~ 146 (345)
T cd08287 68 VGSEVTSVKP-GDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPS 146 (345)
T ss_pred eCCCCCccCC-CCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhh
Confidence 3566667777 888865 21 13899999999975 899999999873221
Q ss_pred --ccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCc
Q 025257 50 --LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 127 (255)
Q Consensus 50 --~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~ 127 (255)
++...+.|||+++ ....++++++|+|.|+|++|++++|+|+..|+..++++++++++.+.++++|++.++++++ .
T Consensus 147 ~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~--~ 223 (345)
T cd08287 147 LLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERG--E 223 (345)
T ss_pred hHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCc--c
Confidence 2235688999987 5778999999999888999999999999999944888888888888889999999999887 7
Q ss_pred hHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCc-hhhccCcEEEEeeeCCCCccC
Q 025257 128 PIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP-FQLVTGRVWKGTAFGGFKSRS 205 (255)
Q Consensus 128 ~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ 205 (255)
++.+.+.+.+++ ++|+++|++|++..+..++++++++ |+++.+|.... ...++. ..+.++.++.+.... ..+
T Consensus 224 ~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~ 297 (345)
T cd08287 224 EAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPHG--GVELDVRELFFRNVGLAGGPAP---VRR 297 (345)
T ss_pred cHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEEEEecccCC--CCccCHHHHHhcceEEEEecCC---cHH
Confidence 888888888877 8999999999877699999999996 99999987542 234444 334458888775322 235
Q ss_pred cHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 206 QVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
.++++++++.++.+.+.+.+.++++++++++|++.+.++...|++|++
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~~~~~ 345 (345)
T cd08287 298 YLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAIKVLLRP 345 (345)
T ss_pred HHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCceEEEeCC
Confidence 789999999999987655556889999999999998877777999864
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=197.92 Aligned_cols=239 Identities=22% Similarity=0.289 Sum_probs=191.7
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChH
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTV 82 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~v 82 (255)
|+++..+++ ||+|+.+. .|+|++|++++++.++++|+++ ..++....+++++++++. ..+++++++|+|+|+|.+
T Consensus 67 G~~v~~~~~-Gd~V~~~~-~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~v 141 (312)
T cd08269 67 GPGVRGLAV-GDRVAGLS-GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFI 141 (312)
T ss_pred CCCCcCCCC-CCEEEEec-CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHH
Confidence 556667888 99998763 5899999999999999999988 233322267889999874 888999999999988999
Q ss_pred HHHHHHHHHHcCCCe-EEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHH
Q 025257 83 GLAVAEGAKAAGASR-VIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 83 G~~a~~l~~~~g~~~-v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~ 160 (255)
|++++++|+..|+ + |+++++++++.+.++++|++.+++++. .++.+.+.+.+.+ ++|+++||+|....+...+++
T Consensus 142 g~~~~~la~~~g~-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~ 218 (312)
T cd08269 142 GLLFLQLAAAAGA-RRVIAIDRRPARLALARELGATEVVTDDS--EAIVERVRELTGGAGADVVIEAVGHQWPLDLAGEL 218 (312)
T ss_pred HHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHhCCceEecCCC--cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHH
Confidence 9999999999999 7 999999989999889999998888776 7888888888877 999999999887668999999
Q ss_pred hccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCC-ccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHH
Q 025257 161 CHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFK-SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 238 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 238 (255)
++++ |+++.+|... ..+.+++..... ++.++.++...... ..+.+++++++++++.+.+...+.++|+++++++|+
T Consensus 219 l~~~-g~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 296 (312)
T cd08269 219 VAER-GRLVIFGYHQ-DGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAF 296 (312)
T ss_pred hccC-CEEEEEccCC-CCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHH
Confidence 9997 9999998753 223344433333 37777666433221 235788999999999977644456789999999999
Q ss_pred HHhhCCCe--eEEEE
Q 025257 239 RYMHGGDC--LRCVL 251 (255)
Q Consensus 239 ~~~~~~~~--~k~vi 251 (255)
+.+.+++. +|+++
T Consensus 297 ~~~~~~~~~~~~~~~ 311 (312)
T cd08269 297 EAARRRPDGFIKGVI 311 (312)
T ss_pred HHHHhCCCCceEEEe
Confidence 99987753 49886
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=201.66 Aligned_cols=238 Identities=13% Similarity=0.179 Sum_probs=188.2
Q ss_pred CCCCCCccccCCccccccc---CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCC-----CCE
Q 025257 2 MNDRKSRFSINGKPIYHFM---GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSI 73 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~---~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~ 73 (255)
+|.++.+|++ ||+|+++. ..|+|++|++++++.++++|+++++++++.+++++.|||+++....++++ +++
T Consensus 73 vG~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~ 151 (336)
T TIGR02817 73 VGDEVTLFKP-GDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRA 151 (336)
T ss_pred eCCCCCCCCC-CCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCE
Confidence 4667788999 99998763 35999999999999999999999999999999999999999888888887 999
Q ss_pred EEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 74 VAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 74 vlI~G~-g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
|||+|+ |++|++++|+|+.+ |+ +|+++++++++.+.++++|+++++++. .++.+.+++..++++|+++|++++.
T Consensus 152 vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~g~~~~~~~~---~~~~~~i~~~~~~~vd~vl~~~~~~ 227 (336)
T TIGR02817 152 LLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLELGAHHVIDHS---KPLKAQLEKLGLEAVSYVFSLTHTD 227 (336)
T ss_pred EEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHcCCCEEEECC---CCHHHHHHHhcCCCCCEEEEcCCcH
Confidence 999987 99999999999998 99 999999999999999999999998865 4566777765434899999998765
Q ss_pred HHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeC--CCC-c------cCcHHHHHHHHHcCCCCC
Q 025257 152 SVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFG--GFK-S------RSQVPWLVDKYMKKEIKV 221 (255)
Q Consensus 152 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~--~~~-~------~~~~~~~~~~~~~~~~~~ 221 (255)
..+...+++++++ |+++.++.. ..++...+.. +.++.+.... ... . ...++++++++.++.+++
T Consensus 228 ~~~~~~~~~l~~~-G~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 301 (336)
T TIGR02817 228 QHFKEIVELLAPQ-GRFALIDDP-----AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRT 301 (336)
T ss_pred HHHHHHHHHhccC-CEEEEEccc-----ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeec
Confidence 6589999999996 999988532 1233333333 4555543322 111 0 134678899999998654
Q ss_pred CCcceeee---ecchHHHHHHHhhCCCee-EEEEe
Q 025257 222 DEYVTHNM---TLGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 222 ~~~~~~~~---~~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
. +.+.+ +++++++|++.+.+++.. |++++
T Consensus 302 ~--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 334 (336)
T TIGR02817 302 T--LAETFGTINAANLKRAHALIESGKARGKIVLE 334 (336)
T ss_pred c--chhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence 2 23344 478999999999888765 88764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. |
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=198.74 Aligned_cols=234 Identities=21% Similarity=0.241 Sum_probs=190.2
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
.|+++..|++ ||+|+++...|+|++|+.++.++++++|+++++++++++++.+.|||+++...... ++++|+|+|+ |
T Consensus 66 ~G~~v~~~~~-Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~ 143 (305)
T cd08270 66 AAADGSGPAV-GARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASG 143 (305)
T ss_pred eCCCCCCCCC-CCEEEEecCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCc
Confidence 3566777888 99999876679999999999999999999999999999999999999988665555 5999999998 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~ 160 (255)
++|++++++++..|+ +|+.+++++++.+.++++|++.+++... +..++++|+++|++|+.. +...+++
T Consensus 144 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~~~~d~vl~~~g~~~-~~~~~~~ 211 (305)
T cd08270 144 GVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVGGS----------ELSGAPVDLVVDSVGGPQ-LARALEL 211 (305)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEeccc----------cccCCCceEEEECCCcHH-HHHHHHH
Confidence 999999999999999 9999999999999999999876654321 112237999999999876 8999999
Q ss_pred hccCCceEEEEccCCCCCccccCchhhcc---CcEEEEeeeCC-CCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHH
Q 025257 161 CHKGWGTSVIVGVAASGQEISTRPFQLVT---GRVWKGTAFGG-FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 236 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~~~~~~~~~~---~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (255)
++.+ |+++.+|... .....++...+.. +.++.++.... ....+.+..++++++++++.+. +.++++++++++
T Consensus 212 l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~ 287 (305)
T cd08270 212 LAPG-GTVVSVGSSS-GEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDPR--IGWRGSWTEIDE 287 (305)
T ss_pred hcCC-CEEEEEeccC-CCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCccce--eccEEcHHHHHH
Confidence 9996 9999998754 2233444444443 78888877553 1122467888999999997643 557899999999
Q ss_pred HHHHhhCCCee-EEEEec
Q 025257 237 AFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 237 a~~~~~~~~~~-k~vi~~ 253 (255)
|++.+.++... |+++.+
T Consensus 288 a~~~~~~~~~~gkvvi~~ 305 (305)
T cd08270 288 AAEALLARRFRGKAVLDV 305 (305)
T ss_pred HHHHHHcCCCCceEEEeC
Confidence 99999877766 998864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=200.53 Aligned_cols=223 Identities=27% Similarity=0.343 Sum_probs=178.9
Q ss_pred cceeeEEEEcCC--ceEEcCCCCCcc---cccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCe
Q 025257 23 STFSQYTVVHDV--SVAKIDPQAPLD---KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR 97 (255)
Q Consensus 23 g~~ae~~~v~~~--~~~~~p~~~~~~---~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~ 97 (255)
|+|+||++++.+ .++++|++++++ +++.++.+++|||+++ ...+++++++|+|.|+|++|++++|+++.+|+.+
T Consensus 125 g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~ 203 (375)
T cd08282 125 GGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASR 203 (375)
T ss_pred CeeeeEEEeecccCcEEECCCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 899999999976 899999999998 5677888899999988 7889999999999888999999999999999757
Q ss_pred EEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH-----------HHHHHHHHhccCCc
Q 025257 98 VIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS-----------VMRAALECCHKGWG 166 (255)
Q Consensus 98 v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~-----------~~~~~~~~l~~~~G 166 (255)
|+++++++++.+.++++|+. .+++++ +++.+.+.+.+++++|+++||+|.+. .+...+++++++ |
T Consensus 204 vi~~~~~~~~~~~~~~~g~~-~v~~~~--~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-g 279 (375)
T cd08282 204 VYVVDHVPERLDLAESIGAI-PIDFSD--GDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPG-G 279 (375)
T ss_pred EEEECCCHHHHHHHHHcCCe-EeccCc--ccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcC-c
Confidence 88998999999999999984 567776 77888888776667999999999762 378999999996 9
Q ss_pred eEEEEccCCCCC-----------ccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchH
Q 025257 167 TSVIVGVAASGQ-----------EISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEI 234 (255)
Q Consensus 167 ~~v~~g~~~~~~-----------~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (255)
+++.+|...... ...++...++. +..+.+... ...+.+.++++++.++++++...+.++|+++++
T Consensus 280 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~ 356 (375)
T cd08282 280 GIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQA---PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDA 356 (375)
T ss_pred EEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEecC---CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHH
Confidence 999888643211 12233333333 555554432 123568889999999998765557789999999
Q ss_pred HHHHHHhhCCCeeEEEEec
Q 025257 235 NEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 235 ~~a~~~~~~~~~~k~vi~~ 253 (255)
++|++.+.++...|+|+++
T Consensus 357 ~~a~~~~~~~~~~kvvv~~ 375 (375)
T cd08282 357 PEAYARFDKRLETKVVIKP 375 (375)
T ss_pred HHHHHHHhcCCceEEEeCC
Confidence 9999999887733999864
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=198.39 Aligned_cols=220 Identities=21% Similarity=0.318 Sum_probs=178.9
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIG 100 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~ 100 (255)
+|+++||+.++.++++++|+++++++++.++.++.|||+++ ....++++++|||+|+|++|++++++++.. |+ +|++
T Consensus 115 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~ 192 (338)
T PRK09422 115 DGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIA 192 (338)
T ss_pred cCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEE
Confidence 58999999999999999999999999999999999999987 778899999999999999999999999985 99 9999
Q ss_pred EcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcc
Q 025257 101 IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180 (255)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 180 (255)
+++++++++.++++|++.++++++ ..++.+.+++.++ ++|.++++.++...++..+++++.+ |+++.+|.... ..
T Consensus 193 ~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~ 267 (338)
T PRK09422 193 VDINDDKLALAKEVGADLTINSKR-VEDVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPPE--SM 267 (338)
T ss_pred EeCChHHHHHHHHcCCcEEecccc-cccHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCCC--Cc
Confidence 999999999999999998888752 1456677777765 6885555555555599999999997 99999987532 23
Q ss_pred ccCchhhc-cCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecC
Q 025257 181 STRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 181 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
+++...+. ++.++.++... ..++++.++++++++.+.+ .+ ..++++++++|++.+.+++.. |+++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~g~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gkvvv~~~ 337 (338)
T PRK09422 268 DLSIPRLVLDGIEVVGSLVG---TRQDLEEAFQFGAEGKVVP--KV-QLRPLEDINDIFDEMEQGKIQGRMVIDFT 337 (338)
T ss_pred eecHHHHhhcCcEEEEecCC---CHHHHHHHHHHHHhCCCCc--cE-EEEcHHHHHHHHHHHHcCCccceEEEecC
Confidence 34433333 37777665432 2357888999999998643 34 468999999999999888766 9998764
|
|
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=197.81 Aligned_cols=240 Identities=20% Similarity=0.311 Sum_probs=189.8
Q ss_pred CCCCCccccCCcccccc---------------------------cCccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYHF---------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~---------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++..+++ |++|++. ..+|+|+||+.++.+.++++|+++++++++.+ .++
T Consensus 73 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~ 150 (341)
T PRK05396 73 GSEVTGFKV-GDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPF 150 (341)
T ss_pred CCCCCcCCC-CCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHH
Confidence 567777888 8888754 13589999999999999999999999888754 466
Q ss_pred hhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHh
Q 025257 56 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
.++++++.. ...++++|+|+|+|++|++++|+++++|+.+|+++++++++.++++++|+++++++++ .++.+.+++
T Consensus 151 ~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~--~~~~~~~~~ 226 (341)
T PRK05396 151 GNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAK--EDLRDVMAE 226 (341)
T ss_pred HHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc--ccHHHHHHH
Confidence 677665533 3468999999988999999999999999855888888888999999999999999887 788888888
Q ss_pred hcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcHHHHHHH
Q 025257 136 LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDK 213 (255)
Q Consensus 136 ~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 213 (255)
.+.+ ++|++|||.|+...+..++++++++ |+++.+|..... .+++...+. ++.++.++.... ..+.+..++++
T Consensus 227 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~ 301 (341)
T PRK05396 227 LGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPGD--MAIDWNKVIFKGLTIKGIYGRE--MFETWYKMSAL 301 (341)
T ss_pred hcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCC--CcccHHHHhhcceEEEEEEccC--ccchHHHHHHH
Confidence 8776 8999999999877789999999997 999999875422 233333333 377777765221 12456678888
Q ss_pred HHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEecC
Q 025257 214 YMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 254 (255)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~ 254 (255)
++++ +.+.+.+.++|+++++++|++.+.++...|++++++
T Consensus 302 ~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~~ 341 (341)
T PRK05396 302 LQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDWD 341 (341)
T ss_pred HHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEecC
Confidence 8888 445555678999999999999988776449999764
|
|
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=197.21 Aligned_cols=241 Identities=25% Similarity=0.379 Sum_probs=189.2
Q ss_pred CCCCCccccCCccccccc---------------------------CccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYHFM---------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++..+++ ||+|+++. ..|+|++|++++.+.++++|++++.+.+ +++.++
T Consensus 73 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~ 150 (341)
T cd05281 73 GEGVTRVKV-GDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPL 150 (341)
T ss_pred CCCCCCCCC-CCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhHH
Confidence 455666778 99997641 3589999999999999999999988555 555678
Q ss_pred hhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHh
Q 025257 56 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
.++++++. ...+++++|||+|+|++|++++|+++..|+.+|+++++++++.+.++++|+++++++++ .++. .+.+
T Consensus 151 ~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~-~~~~ 225 (341)
T cd05281 151 GNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPRE--EDVV-EVKS 225 (341)
T ss_pred HHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCccc--ccHH-HHHH
Confidence 88888764 45679999999988999999999999999856888888888998889999998888776 6777 7888
Q ss_pred hcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCccCcHHHHHHHH
Q 025257 136 LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKY 214 (255)
Q Consensus 136 ~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 214 (255)
.+++ ++|++|||+|+......++++++++ |+++.+|........++....+.++..+.++.... ..+.+.++++++
T Consensus 226 ~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 302 (341)
T cd05281 226 VTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGRK--MFETWYQVSALL 302 (341)
T ss_pred HcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCCCcccccchhhhccceEEEEEecCC--cchhHHHHHHHH
Confidence 7777 9999999999877689999999997 99999987543211121122333477777665221 225678899999
Q ss_pred HcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 215 MKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
.++.+.+.+.+.++++++++++|++.+.++...|+++++
T Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~gk~vv~~ 341 (341)
T cd05281 303 KSGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVLYP 341 (341)
T ss_pred HcCCCChhHheEEEecHHHHHHHHHHHhcCCCceEEecC
Confidence 999987655566789999999999999887733999864
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=198.52 Aligned_cols=241 Identities=20% Similarity=0.266 Sum_probs=192.2
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-Ch
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GT 81 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~ 81 (255)
|.++..+++ ||+|++.. .|+|++|++++...++++|+. +.+++.++.++.|||+++.+..+++++++|+|+|+ |.
T Consensus 76 G~~v~~~~~-Gd~V~~~~-~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ 151 (329)
T cd08250 76 GEGVTDFKV-GDAVATMS-FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGG 151 (329)
T ss_pred CCCCCCCCC-CCEEEEec-CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccH
Confidence 556667888 99998763 589999999999999999997 35677888899999999888889999999999996 99
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHh
Q 025257 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECC 161 (255)
Q Consensus 82 vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l 161 (255)
+|++++++++..|+ +|+++++++++.+.++++|++.+++..+ .++.+.+....++++|+++|++|+.. +...++++
T Consensus 152 ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~~~~vd~v~~~~g~~~-~~~~~~~l 227 (329)
T cd08250 152 TGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDRPINYKT--EDLGEVLKKEYPKGVDVVYESVGGEM-FDTCVDNL 227 (329)
T ss_pred HHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCceEEeCCC--ccHHHHHHHhcCCCCeEEEECCcHHH-HHHHHHHh
Confidence 99999999999999 8999999999999999999988888776 66777776654448999999999865 89999999
Q ss_pred ccCCceEEEEccCCCC---------CccccCchhhccCcEEEEeeeCCCC--ccCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 162 HKGWGTSVIVGVAASG---------QEISTRPFQLVTGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 162 ~~~~G~~v~~g~~~~~---------~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
+++ |+++.+|..... ....++...+.++.++.++....+. ..+.+.++++++.++.+.+......+|+
T Consensus 228 ~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 306 (329)
T cd08250 228 ALK-GRLIVIGFISGYQSGTGPSPVKGATLPPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRG 306 (329)
T ss_pred ccC-CeEEEEecccCCcccCcccccccccccHHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccC
Confidence 996 999999875321 0112222334448888887654321 1245678889999998765433445689
Q ss_pred cchHHHHHHHhhCCCee-EEEEe
Q 025257 231 LGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
++++++|++.+.+++.. |++++
T Consensus 307 ~~~~~~a~~~~~~~~~~~kvvv~ 329 (329)
T cd08250 307 LESVADAVDYLYSGKNIGKVVVE 329 (329)
T ss_pred HHHHHHHHHHHHcCCCCceEEeC
Confidence 99999999999877766 88864
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=197.26 Aligned_cols=235 Identities=23% Similarity=0.294 Sum_probs=186.3
Q ss_pred CCCCCccccCCcccccc--------------------------------cCccceeeEEEEcCCceEEcCCCCCcccccc
Q 025257 3 NDRKSRFSINGKPIYHF--------------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL 50 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~--------------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~ 50 (255)
|.++..|++ ||+|+.. ..+|+|+||++++.+.++++|++++.++++.
T Consensus 69 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~ 147 (339)
T cd08232 69 GPGVTGLAP-GQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL 147 (339)
T ss_pred CCCCCcCCC-CCEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh
Confidence 556777888 9998751 1258999999999999999999999998876
Q ss_pred cccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHH
Q 025257 51 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 130 (255)
Q Consensus 51 ~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~ 130 (255)
..++++||+++.....+ ++++|||.|+|.+|++++|+|+.+|+.+++++++++++.+.++++|+++++++++ .++
T Consensus 148 -~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~--~~~- 222 (339)
T cd08232 148 -AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR--DPL- 222 (339)
T ss_pred -cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc--hhh-
Confidence 56888999987665556 9999999988999999999999999856889988888888889999999998775 442
Q ss_pred HHHHhhc-CC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcH
Q 025257 131 QVLVDLT-DG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQV 207 (255)
Q Consensus 131 ~~i~~~~-~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~ 207 (255)
.+.. .. ++|+++|+.|....++..+++++++ |+++.+|... .....+...++ ++.++.++.. ..+.+
T Consensus 223 ---~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 292 (339)
T cd08232 223 ---AAYAADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLG--GPVPLPLNALVAKELDLRGSFR----FDDEF 292 (339)
T ss_pred ---hhhhccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC--CCccCcHHHHhhcceEEEEEec----CHHHH
Confidence 2222 22 6999999999765589999999997 9999998643 22333333333 3777776642 22568
Q ss_pred HHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 208 PWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++++++++.+.+.+.+.++|+++++++|++.+.++... |+|+++
T Consensus 293 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 339 (339)
T cd08232 293 AEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF 339 (339)
T ss_pred HHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence 8899999999887666567899999999999999877655 999874
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=197.70 Aligned_cols=215 Identities=27% Similarity=0.388 Sum_probs=178.8
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEE
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 100 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~ 100 (255)
..|+|+||++++.+.++++|+++++++++.+++.+.|||+++.. ..++++++++|.|+|++|++++++++..|+ +|++
T Consensus 121 ~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~ 198 (337)
T cd05283 121 TQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKR-NGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTA 198 (337)
T ss_pred CCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEE
Confidence 35899999999999999999999999999999999999998744 568999999998889999999999999999 9999
Q ss_pred EcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcc
Q 025257 101 IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180 (255)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 180 (255)
+++++++.++++++|++.+++.++ .++.+.. ++++|++|||++.+..+..++++++++ |+++.+|..... .
T Consensus 199 ~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~~----~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~ 269 (337)
T cd05283 199 FSRSPSKKEDALKLGADEFIATKD--PEAMKKA----AGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEEP--L 269 (337)
T ss_pred EcCCHHHHHHHHHcCCcEEecCcc--hhhhhhc----cCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEeccCCC--C
Confidence 999999999999999998888765 4333221 238999999999875589999999996 999999875432 2
Q ss_pred ccCchhhc-cCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEe
Q 025257 181 STRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 181 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
.++...++ ++.++.++.... .++++.++++++++++++ .+ ++|+++++++||+.+.+++.. |+|++
T Consensus 270 ~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~ 337 (337)
T cd05283 270 PVPPFPLIFGRKSVAGSLIGG---RKETQEMLDFAAEHGIKP--WV-EVIPMDGINEALERLEKGDVRYRFVLD 337 (337)
T ss_pred ccCHHHHhcCceEEEEecccC---HHHHHHHHHHHHhCCCcc--ce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence 44444533 488998887553 267899999999998654 34 689999999999999888866 98874
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=197.84 Aligned_cols=222 Identities=24% Similarity=0.389 Sum_probs=175.2
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
+|+|+||++++...++++|++++++++++.. ++.++++++ ...++.++++|+|+|+|++|++++++++..|+..++++
T Consensus 135 ~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~ 212 (364)
T PLN02702 135 HGSLANQVVHPADLCFKLPENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIV 212 (364)
T ss_pred CCcccceEEcchHHeEECCCCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 5899999999999999999999999887532 455688876 77889999999999889999999999999999557888
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhh---cCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCC
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDL---TDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 178 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~---~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~ 178 (255)
++++++.+.++++|++.++++...+.++.+.+.+. +++++|++||++|....+..++++++++ |+++.+|....
T Consensus 213 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-- 289 (364)
T PLN02702 213 DVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHN-- 289 (364)
T ss_pred CCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC--
Confidence 88888999899999988765432125676666554 2338999999999766699999999996 99999987532
Q ss_pred ccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeec--chHHHHHHHhhCCCee-EEEEe
Q 025257 179 EISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTL--GEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 179 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
........... ++++.+++.. ...++.++++++++.+.+.+.+.++|++ +++++|++.+.+++.. |+++.
T Consensus 290 ~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~ 363 (364)
T PLN02702 290 EMTVPLTPAAAREVDVVGVFRY----RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN 363 (364)
T ss_pred CCcccHHHHHhCccEEEEeccC----hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence 22333333433 8888876532 2467889999999998765566778665 7999999998877655 99985
|
|
| >cd08249 enoyl_reductase_like enoyl_reductase_like | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=197.07 Aligned_cols=237 Identities=22% Similarity=0.325 Sum_probs=188.8
Q ss_pred CCCCCCccccCCcccccccC--------ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCC-----
Q 025257 2 MNDRKSRFSINGKPIYHFMG--------TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKV----- 68 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~--------~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~----- 68 (255)
.|+++..+++ ||+|+++.. +|+|++|++++...++++|+++++++++.+++++.|||+++.+..++
T Consensus 69 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~ 147 (339)
T cd08249 69 VGSGVTRFKV-GDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPP 147 (339)
T ss_pred eCCCcCcCCC-CCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCC
Confidence 3667778888 999997643 58999999999999999999999999999999999999998766554
Q ss_pred -----CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCcc
Q 025257 69 -----EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 69 -----~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
+++++|+|+|+ |++|++++++++..|+ +|++++ ++++.+.++++|+++++++++ .++.+.+++.+++++|
T Consensus 148 ~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~~g~~~v~~~~~--~~~~~~l~~~~~~~~d 223 (339)
T cd08249 148 KPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKSLGADAVFDYHD--PDVVEDIRAATGGKLR 223 (339)
T ss_pred CCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHhcCCCEEEECCC--chHHHHHHHhcCCCee
Confidence 78999999997 9999999999999999 999888 568999999999999998887 7888888877766899
Q ss_pred EEEecCCcHHHHHHHHHHhcc--CCceEEEEccCCCCCccccCchhhccCcEEEEe---eeCC------CCccCcHHHHH
Q 025257 143 YSFECIGNVSVMRAALECCHK--GWGTSVIVGVAASGQEISTRPFQLVTGRVWKGT---AFGG------FKSRSQVPWLV 211 (255)
Q Consensus 143 ~v~d~~g~~~~~~~~~~~l~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~---~~~~------~~~~~~~~~~~ 211 (255)
+++|++|.+..+...++++++ + |+++.+|...... .+. .+..+... .+.. ......+.+++
T Consensus 224 ~vl~~~g~~~~~~~~~~~l~~~~~-g~~v~~g~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (339)
T cd08249 224 YALDCISTPESAQLCAEALGRSGG-GKLVSLLPVPEET--EPR-----KGVKVKFVLGYTVFGEIPEDREFGEVFWKYLP 295 (339)
T ss_pred EEEEeeccchHHHHHHHHHhccCC-CEEEEecCCCccc--cCC-----CCceEEEEEeeeecccccccccchHHHHHHHH
Confidence 999999984559999999999 8 9999998754221 111 11222221 1110 11123467788
Q ss_pred HHHHcCCCCCCCcceeeee--cchHHHHHHHhhCCC-ee-EEEEec
Q 025257 212 DKYMKKEIKVDEYVTHNMT--LGEINEAFRYMHGGD-CL-RCVLKM 253 (255)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~-~~-k~vi~~ 253 (255)
++++++.+.+. ...+++ ++++++|++.+..++ .. |+|+++
T Consensus 296 ~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~ 339 (339)
T cd08249 296 ELLEEGKLKPH--PVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL 339 (339)
T ss_pred HHHHcCCccCC--CceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence 99999987764 334677 999999999998877 66 999874
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=196.27 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=181.8
Q ss_pred CCccccCCccccccc------CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhc--C-CCCCCEEEE
Q 025257 6 KSRFSINGKPIYHFM------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA--K-VEPGSIVAV 76 (255)
Q Consensus 6 ~~~~~~~g~~v~~~~------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~--~-~~~~~~vlI 76 (255)
+..+++ ||+|++.. ..|+|+||++++++.++++|+++++++++.+++++.||++++.... . ..++++|||
T Consensus 74 ~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI 152 (326)
T cd08289 74 DPRFKP-GDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLV 152 (326)
T ss_pred CCCCCC-CCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 345777 99998653 3699999999999999999999999999999999999998875432 3 345789999
Q ss_pred EcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHH
Q 025257 77 FGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMR 155 (255)
Q Consensus 77 ~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~ 155 (255)
+|+ |++|++++|+|+.+|+ +|+++++++++.+.++++|++.+++.++ . ..+.+.+.+++++|+++|++|+.. +.
T Consensus 153 ~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~-~~~~~~~~~~~~~d~vld~~g~~~-~~ 227 (326)
T cd08289 153 TGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKEVIPREE--L-QEESIKPLEKQRWAGAVDPVGGKT-LA 227 (326)
T ss_pred EcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCEEEcchh--H-HHHHHHhhccCCcCEEEECCcHHH-HH
Confidence 998 9999999999999999 9999999999999999999988988764 3 345566664348999999999865 99
Q ss_pred HHHHHhccCCceEEEEccCCCCCccccCchhh-ccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCC---CCCcceeeeec
Q 025257 156 AALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK---VDEYVTHNMTL 231 (255)
Q Consensus 156 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 231 (255)
..+++++++ |+++.+|.... ...+++...+ .++.++.++...... ......++..+.+ .+. ....+.++|++
T Consensus 228 ~~~~~l~~~-G~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 303 (326)
T cd08289 228 YLLSTLQYG-GSVAVSGLTGG-GEVETTVFPFILRGVNLLGIDSVECP-MELRRRIWRRLAT-DLKPTQLLNEIKQEITL 303 (326)
T ss_pred HHHHHhhcC-CEEEEEeecCC-CCCCcchhhhhhccceEEEEEeEecC-chHHHHHHHHHHh-hcCccccccccceEeeH
Confidence 999999996 99999997532 2333334445 448888887532211 1123334333322 221 11234689999
Q ss_pred chHHHHHHHhhCCCee-EEEEec
Q 025257 232 GEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 232 ~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
+++++|++.+.+++.. |+++++
T Consensus 304 ~~~~~a~~~~~~~~~~gkvvv~~ 326 (326)
T cd08289 304 DELPEALKQILQGRVTGRTVVKL 326 (326)
T ss_pred HHHHHHHHHHhcCcccceEEEeC
Confidence 9999999999888776 988863
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=192.77 Aligned_cols=242 Identities=22% Similarity=0.286 Sum_probs=197.9
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-Ch
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GT 81 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~ 81 (255)
|+++.+++. ||+|+++...|++++|+.++.+.++++|++++.++++.++..+.++++++....+++++++|+|+|+ |+
T Consensus 70 g~~~~~~~~-G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~ 148 (320)
T cd05286 70 GPGVTGFKV-GDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGG 148 (320)
T ss_pred CCCCCCCCC-CCEEEEecCCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCch
Confidence 556677888 9999876436899999999999999999999999999999999999999888899999999999996 99
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHH
Q 025257 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 82 vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~ 160 (255)
+|++++++++.+|+ +|+++++++++.+.++++|++.+++..+ .++.+.+...+.+ ++|++++|+++.. ....+++
T Consensus 149 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~ 224 (320)
T cd05286 149 VGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRD--EDFVERVREITGGRGVDVVYDGVGKDT-FEGSLDS 224 (320)
T ss_pred HHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCCc--hhHHHHHHHHcCCCCeeEEEECCCcHh-HHHHHHh
Confidence 99999999999999 9999999999999999999988888776 7788888888777 8999999999865 8999999
Q ss_pred hccCCceEEEEccCCCCCccccCchhh-ccCcEEEEeeeCCCC-cc----CcHHHHHHHHHcCCCCCCCcceeeeecchH
Q 025257 161 CHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFK-SR----SQVPWLVDKYMKKEIKVDEYVTHNMTLGEI 234 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (255)
++++ |+++.+|..... ...++...+ .++.++.+.....+. .. +.+.++++++.++.+.+. ..+.|+++++
T Consensus 225 l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~ 300 (320)
T cd05286 225 LRPR-GTLVSFGNASGP-VPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVE--IGKRYPLADA 300 (320)
T ss_pred hccC-cEEEEEecCCCC-CCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCc--ccceEcHHHH
Confidence 9996 999999875322 222333334 347777655433222 11 234567888888886543 4578999999
Q ss_pred HHHHHHhhCCCee-EEEEec
Q 025257 235 NEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 235 ~~a~~~~~~~~~~-k~vi~~ 253 (255)
++|++.+.++... |+++++
T Consensus 301 ~~a~~~~~~~~~~~~vv~~~ 320 (320)
T cd05286 301 AQAHRDLESRKTTGKLLLIP 320 (320)
T ss_pred HHHHHHHHcCCCCceEEEeC
Confidence 9999999887766 888764
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-27 Score=194.61 Aligned_cols=239 Identities=24% Similarity=0.415 Sum_probs=197.7
Q ss_pred CCCCCccccCCccccccc---------------------CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhH
Q 025257 3 NDRKSRFSINGKPIYHFM---------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~ 61 (255)
|.++..+++ ||+|++.. .+|+|++|+.++.+.++++|+++++.+++.+++++.+||++
T Consensus 73 G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~ 151 (336)
T cd08276 73 GEGVTRFKV-GDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNA 151 (336)
T ss_pred CCCCcCCCC-CCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHH
Confidence 456667788 99888653 15889999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-C
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G 140 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~ 140 (255)
+.....++++++|+|+|+|++|++++++++..|+ +|+++++++++.+.++++|++.+++... +.++.+.+.+.+++ +
T Consensus 152 l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 229 (336)
T cd08276 152 LFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRT-TPDWGEEVLKLTGGRG 229 (336)
T ss_pred HHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcCCc-ccCHHHHHHHHcCCCC
Confidence 8888899999999999889999999999999999 8999999999999998899988887653 14577788888877 9
Q ss_pred ccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchh-hccCcEEEEeeeCCCCccCcHHHHHHHHHcCCC
Q 025257 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEI 219 (255)
Q Consensus 141 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 219 (255)
+|+++|+++... +..++++++++ |+++.+|...... ....... +.++.++.++..+. ...+.+++++++++.+
T Consensus 230 ~d~~i~~~~~~~-~~~~~~~l~~~-G~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l 303 (336)
T cd08276 230 VDHVVEVGGPGT-LAQSIKAVAPG-GVISLIGFLSGFE-APVLLLPLLTKGATLRGIAVGS---RAQFEAMNRAIEAHRI 303 (336)
T ss_pred CcEEEECCChHH-HHHHHHhhcCC-CEEEEEccCCCCc-cCcCHHHHhhcceEEEEEecCc---HHHHHHHHHHHHcCCc
Confidence 999999998766 89999999996 9999998764322 1233333 34488888887553 3578889999988876
Q ss_pred CCCCcceeeeecchHHHHHHHhhCCCee-EEEEe
Q 025257 220 KVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
.+. ...+|++++++++++.+.+++.. |++++
T Consensus 304 ~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 335 (336)
T cd08276 304 RPV--IDRVFPFEEAKEAYRYLESGSHFGKVVIR 335 (336)
T ss_pred ccc--cCcEEeHHHHHHHHHHHHhCCCCceEEEe
Confidence 543 45789999999999998877766 88875
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=194.82 Aligned_cols=237 Identities=26% Similarity=0.409 Sum_probs=189.5
Q ss_pred CCCCCCccccCCcccccc---------------------------cCccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 2 MNDRKSRFSINGKPIYHF---------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~---------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
.|.++.++++ ||+|++. ...|+|++|++++.++++++|+++++.+++.+ .+
T Consensus 67 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~ 144 (334)
T cd08234 67 VGSKVTGFKV-GDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EP 144 (334)
T ss_pred eCCCCCCCCC-CCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hH
Confidence 3566777888 9998751 13589999999999999999999999988766 67
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
+.++++++ ...+++++++|+|+|+|.+|.+++++|+..|+.+|+++++++++.+.++++|++.++++.+ .++.+.
T Consensus 145 ~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~-- 219 (334)
T cd08234 145 LSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR--EDPEAQ-- 219 (334)
T ss_pred HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC--CCHHHH--
Confidence 88999987 7889999999999988999999999999999933888999999999999999988888776 555544
Q ss_pred hhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcHHHHHH
Q 025257 135 DLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVD 212 (255)
Q Consensus 135 ~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 212 (255)
..+.+ ++|+++||++....+...+++++++ |+++.+|........+++...+. ++.++.+.... ...++++++
T Consensus 220 ~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 294 (334)
T cd08234 220 KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN----PYTFPRAIA 294 (334)
T ss_pred HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC----HHHHHHHHH
Confidence 33444 8999999998766689999999996 99999987543223344444433 37777776532 246888999
Q ss_pred HHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEE
Q 025257 213 KYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi 251 (255)
+++++.+.+.+.+..+|+++++++|++.+.+ +.. |+|+
T Consensus 295 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi 333 (334)
T cd08234 295 LLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV 333 (334)
T ss_pred HHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence 9999987665556678999999999999987 544 8876
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=194.92 Aligned_cols=233 Identities=23% Similarity=0.354 Sum_probs=187.9
Q ss_pred ccccCCccccccc------CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 8 RFSINGKPIYHFM------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 8 ~~~~~g~~v~~~~------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
.+++ ||+|+++. .+|+|++|+.+++..++++|+++++++++.+++++.|||+++.+...++++++|+|+|+ |
T Consensus 75 ~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g 153 (320)
T cd08243 75 TFTP-GQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTS 153 (320)
T ss_pred CCCC-CCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 4677 99998764 24899999999999999999999999999999999999999888888999999999997 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~ 160 (255)
++|++++|+|+.+|+ +|+++++++++.+.++++|++++++. . .++.+.+.+. ++++|+++|++|+.. +...+++
T Consensus 154 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~-~--~~~~~~i~~~-~~~~d~vl~~~~~~~-~~~~~~~ 227 (320)
T cd08243 154 SVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID-D--GAIAEQLRAA-PGGFDKVLELVGTAT-LKDSLRH 227 (320)
T ss_pred hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec-C--ccHHHHHHHh-CCCceEEEECCChHH-HHHHHHH
Confidence 999999999999999 89999999999999999999888754 3 5677778777 448999999999865 9999999
Q ss_pred hccCCceEEEEccCCCCCcc----ccCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHH
Q 025257 161 CHKGWGTSVIVGVAASGQEI----STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 236 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (255)
++++ |+++.+|........ ......+.++.++.++...... ...+++++++++++.+.+. ..++|+++++++
T Consensus 228 l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 303 (320)
T cd08243 228 LRPG-GIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVP-QTPLQELFDFVAAGHLDIP--PSKVFTFDEIVE 303 (320)
T ss_pred hccC-CEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhhh-HHHHHHHHHHHHCCceecc--cccEEcHHHHHH
Confidence 9996 999999875322111 1111112346666666533221 2357788899999986543 457899999999
Q ss_pred HHHHhhCCCee-EEEE
Q 025257 237 AFRYMHGGDCL-RCVL 251 (255)
Q Consensus 237 a~~~~~~~~~~-k~vi 251 (255)
|++.+.++... |+++
T Consensus 304 a~~~~~~~~~~~kvvv 319 (320)
T cd08243 304 AHAYMESNRAFGKVVV 319 (320)
T ss_pred HHHHHHhCCCCCcEEe
Confidence 99999877665 7775
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=192.36 Aligned_cols=236 Identities=19% Similarity=0.212 Sum_probs=180.9
Q ss_pred CCccccCCccccccc------CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcC--CC-CCCEEEE
Q 025257 6 KSRFSINGKPIYHFM------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK--VE-PGSIVAV 76 (255)
Q Consensus 6 ~~~~~~~g~~v~~~~------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~--~~-~~~~vlI 76 (255)
+..+++ ||+|++.. .+|+|++|+++++++++++|+++++++++.+++.+.|||+++....+ ++ ++++|+|
T Consensus 74 ~~~~~~-Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI 152 (325)
T cd05280 74 DPRFRE-GDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLV 152 (325)
T ss_pred CCCCCC-CCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 345677 99998642 36899999999999999999999999999999999999998755443 35 4579999
Q ss_pred EcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHH
Q 025257 77 FGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVM 154 (255)
Q Consensus 77 ~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~ 154 (255)
+|+ |++|++++++|+.+|+ +|+++++++++++.++++|+++++++++ . ...+.+...+ ++|+++|+++++. +
T Consensus 153 ~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~--~~~~~~~~~~~~~d~vi~~~~~~~-~ 226 (325)
T cd05280 153 TGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASEVLDRED--L--LDESKKPLLKARWAGAIDTVGGDV-L 226 (325)
T ss_pred ECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEcchh--H--HHHHHHHhcCCCccEEEECCchHH-H
Confidence 998 9999999999999999 8999999999999999999998888654 2 2223333333 8999999999876 9
Q ss_pred HHHHHHhccCCceEEEEccCCCCCccccCchhh-ccCcEEEEeeeCCCCc---cCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 155 RAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
...+++++++ |+++.+|..... ..+++...+ .++.++.++....... ...++.+.+++..+.. . .+..+|+
T Consensus 227 ~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~ 301 (325)
T cd05280 227 ANLLKQTKYG-GVVASCGNAAGP-ELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDLL--E-IVVREIS 301 (325)
T ss_pred HHHHHhhcCC-CEEEEEecCCCC-ccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCCc--c-ceeeEec
Confidence 9999999996 999999876432 224444445 3588888876543321 0122334444445532 1 2567999
Q ss_pred cchHHHHHHHhhCCCee-EEEEec
Q 025257 231 LGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++++|++.+.+++.. |+|+++
T Consensus 302 ~~~~~~a~~~~~~~~~~gk~vv~~ 325 (325)
T cd05280 302 LEELPEAIDRLLAGKHRGRTVVKI 325 (325)
T ss_pred HHHHHHHHHHHhcCCcceEEEEeC
Confidence 99999999999888766 998864
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >cd08251 polyketide_synthase polyketide synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=190.51 Aligned_cols=241 Identities=18% Similarity=0.304 Sum_probs=193.1
Q ss_pred CCCCCCccccCCccccccc--CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC
Q 025257 2 MNDRKSRFSINGKPIYHFM--GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL 79 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~--~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~ 79 (255)
.|+++.++++ ||+|+++. ..|+|++|++++.+.++++|+++++++++.++.++.+||+++ +...++++++++|+|+
T Consensus 52 ~G~~v~~~~~-Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~~~g~~vli~~~ 129 (303)
T cd08251 52 VGPHVTRLAV-GDEVIAGTGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAKGEHILIQTA 129 (303)
T ss_pred ECCCCCCCCC-CCEEEEecCCCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCCCCCCEEEEecC
Confidence 3566777888 99998763 358999999999999999999999999999999999999987 5789999999999976
Q ss_pred -ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHH
Q 025257 80 -GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAA 157 (255)
Q Consensus 80 -g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~ 157 (255)
|++|++++|+++.+|+ +|+++++++++.+.++++|++.+++..+ .++.+.+...+++ ++|+++|++++.. ....
T Consensus 130 ~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~~~~~~d~v~~~~~~~~-~~~~ 205 (303)
T cd08251 130 TGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE--EDFEEEIMRLTGGRGVDVVINTLSGEA-IQKG 205 (303)
T ss_pred CcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC--ccHHHHHHHHcCCCCceEEEECCcHHH-HHHH
Confidence 9999999999999999 9999999999999999999999998876 7788888888877 8999999998765 8899
Q ss_pred HHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCC------ccCcHHHHHHHHHcCCCCCCCcceeeeec
Q 025257 158 LECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK------SRSQVPWLVDKYMKKEIKVDEYVTHNMTL 231 (255)
Q Consensus 158 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (255)
+++++++ |+++.+|.........++...+.++..+....+.... ..+.+.+++++++++.+.+ ...+.|++
T Consensus 206 ~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~ 282 (303)
T cd08251 206 LNCLAPG-GRYVEIAMTALKSAPSVDLSVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRP--TVSRIFPF 282 (303)
T ss_pred HHHhccC-cEEEEEeccCCCccCccChhHhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccC--CCceEEcH
Confidence 9999996 9999998754222223333334334444433322111 1134667888888888653 35578999
Q ss_pred chHHHHHHHhhCCCee-EEEE
Q 025257 232 GEINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 232 ~~~~~a~~~~~~~~~~-k~vi 251 (255)
++++++++.+.+++.. |+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~iv~ 303 (303)
T cd08251 283 DDIGEAYRYLSDRENIGKVVV 303 (303)
T ss_pred HHHHHHHHHHHhCCCcceEeC
Confidence 9999999999877665 7764
|
Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=190.95 Aligned_cols=217 Identities=22% Similarity=0.297 Sum_probs=174.3
Q ss_pred cccccc-cCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHH
Q 025257 14 KPIYHF-MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA 92 (255)
Q Consensus 14 ~~v~~~-~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~ 92 (255)
+++.++ ..+|+|++|++++.++++++|++++.++++.+ .++.+++. +.+..+++++++|||+|+|.+|++++|+|+.
T Consensus 100 ~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~ 177 (319)
T cd08242 100 RTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLAL 177 (319)
T ss_pred CcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 334444 23689999999999999999999999888764 35556665 4588899999999999889999999999999
Q ss_pred cCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 93 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 93 ~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+|+ +|+++++++++.+.++++|++.++++.+ . +.+ ++|+++||+|+...++..+++++++ |+++..
T Consensus 178 ~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~--~---------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~ 244 (319)
T cd08242 178 TGP-DVVLVGRHSEKLALARRLGVETVLPDEA--E---------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLK 244 (319)
T ss_pred cCC-eEEEEcCCHHHHHHHHHcCCcEEeCccc--c---------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEE
Confidence 999 8999999999999999999988877653 2 234 8999999999866689999999996 999987
Q ss_pred ccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEE
Q 025257 172 GVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCV 250 (255)
Q Consensus 172 g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~v 250 (255)
+.... ...++...+.. +.++.+...+ .+++++++++++++++.+.+.++|+++++++|++.+.++..+|++
T Consensus 245 ~~~~~--~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~v 316 (319)
T cd08242 245 STYAG--PASFDLTKAVVNEITLVGSRCG------PFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKVL 316 (319)
T ss_pred cccCC--CCccCHHHheecceEEEEEecc------cHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEEE
Confidence 76432 23444444433 7777776432 388899999999986666677899999999999999866656999
Q ss_pred Eec
Q 025257 251 LKM 253 (255)
Q Consensus 251 i~~ 253 (255)
|++
T Consensus 317 i~~ 319 (319)
T cd08242 317 LRP 319 (319)
T ss_pred eCC
Confidence 864
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=190.98 Aligned_cols=236 Identities=19% Similarity=0.217 Sum_probs=184.0
Q ss_pred CCCccccCCccccccc------CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhh--cCCCCCC-EEE
Q 025257 5 RKSRFSINGKPIYHFM------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGS-IVA 75 (255)
Q Consensus 5 ~~~~~~~~g~~v~~~~------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~-~vl 75 (255)
++..|++ ||+|++.. ..|++++|+.++.+.++++|+++++++++.+++.+.+|+.++... ..+.+++ +|+
T Consensus 72 ~~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vl 150 (323)
T TIGR02823 72 EDPRFRE-GDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVL 150 (323)
T ss_pred CCCCCCC-CCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEE
Confidence 3456778 99998653 368999999999999999999999999999999999998876433 3488998 999
Q ss_pred EEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHH
Q 025257 76 VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM 154 (255)
Q Consensus 76 I~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~ 154 (255)
|+|+ |++|++++++|+.+|+ +++++++++++++.++++|++.+++.++ ... .++..+.+++|+++||+|+.. +
T Consensus 151 I~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~~--~~~~~~~~~~d~vld~~g~~~-~ 224 (323)
T TIGR02823 151 VTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEVIDRED--LSP--PGKPLEKERWAGAVDTVGGHT-L 224 (323)
T ss_pred EEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEEEcccc--HHH--HHHHhcCCCceEEEECccHHH-H
Confidence 9997 9999999999999999 8999888889999999999988888654 333 344444447999999999876 8
Q ss_pred HHHHHHhccCCceEEEEccCCCCCccccCchhh-ccCcEEEEeeeCCCCc---cCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 155 RAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
...+++++++ |+++.+|.... ...+++...+ .++.++.++....... .+.+..+.+++..+.+.. . ...|+
T Consensus 225 ~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~ 299 (323)
T TIGR02823 225 ANVLAQLKYG-GAVAACGLAGG-PDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLES--I-TREIT 299 (323)
T ss_pred HHHHHHhCCC-CEEEEEcccCC-CCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCcC--c-eeeec
Confidence 9999999997 99999997632 2333433444 4488888876442211 112445556666776543 2 46899
Q ss_pred cchHHHHHHHhhCCCee-EEEEe
Q 025257 231 LGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
++++++|++.+.+++.. |++++
T Consensus 300 l~~~~~a~~~~~~~~~~~k~vv~ 322 (323)
T TIGR02823 300 LEELPEALEQILAGQHRGRTVVD 322 (323)
T ss_pred HHHHHHHHHHHhCCCccceEEEe
Confidence 99999999999888766 98875
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. |
| >smart00829 PKS_ER Enoylreductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=188.76 Aligned_cols=241 Identities=19% Similarity=0.327 Sum_probs=193.8
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
.|+++..+++ ||+|+++. .|+|+||+.++.+.++++|+++++++++.+++++.++|+++.+...+.++++|+|+|+ |
T Consensus 38 ~G~~~~~~~~-Gd~V~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~ 115 (288)
T smart00829 38 VGPGVTGLAV-GDRVMGLA-PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAG 115 (288)
T ss_pred eCCCCcCCCC-CCEEEEEc-CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCc
Confidence 3566777888 99998763 5899999999999999999999999999999999999998878889999999999986 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC--cEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV--TEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAA 157 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~ 157 (255)
.+|++++++++..|+ +|+++++++++.+.++++|+ +.++++.+ .++.+.+.+.+++ ++|+++|++++.. +...
T Consensus 116 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~ 191 (288)
T smart00829 116 GVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD--LSFADEILRATGGRGVDVVLNSLAGEF-LDAS 191 (288)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC--ccHHHHHHHHhCCCCcEEEEeCCCHHH-HHHH
Confidence 999999999999999 99999999999999999998 77888776 7788888887776 8999999999755 8899
Q ss_pred HHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCC-----ccCcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 158 LECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK-----SRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 158 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
+++++++ |+++.+|.........++...+.++.++.+..+.... ....+.++++++.++.+.+. ..+.|+++
T Consensus 192 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 268 (288)
T smart00829 192 LRCLAPG-GRFVEIGKRDIRDNSQLGMAPFRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL--PVTVFPIS 268 (288)
T ss_pred HHhccCC-cEEEEEcCcCCccccccchhhhcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCc--CceEEcHH
Confidence 9999996 9999998753222223333334446666665543211 11246678888888886543 34689999
Q ss_pred hHHHHHHHhhCCCee-EEEE
Q 025257 233 EINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 233 ~~~~a~~~~~~~~~~-k~vi 251 (255)
+++++++.+..+... |+++
T Consensus 269 ~~~~~~~~~~~~~~~~~ivv 288 (288)
T smart00829 269 DVEDAFRYMQQGKHIGKVVL 288 (288)
T ss_pred HHHHHHHHHhcCCCcceEeC
Confidence 999999999877655 7663
|
Enoylreductase in Polyketide synthases. |
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=179.84 Aligned_cols=241 Identities=20% Similarity=0.271 Sum_probs=192.4
Q ss_pred CCCCccccCCcccccccCccceeeEEEEcCCc--eEEcCC--CCCccc-ccccccchhhhhhHHHhhcCCCCCCEEEEEc
Q 025257 4 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS--VAKIDP--QAPLDK-VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 78 (255)
Q Consensus 4 ~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~--~~~~p~--~~~~~~-aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G 78 (255)
++.+++.+ ||.|+++. +|.||.++++.. .+++|. ..++.. ..++..+.+|||..+++...+++|++|+|.|
T Consensus 86 S~~~~~~~-GD~v~g~~---gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSa 161 (343)
T KOG1196|consen 86 SGHPNYKK-GDLVWGIV---GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSA 161 (343)
T ss_pred cCCCCCCc-CceEEEec---cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEee
Confidence 46778888 99998876 599999998754 445543 344333 4456778999999999999999999999998
Q ss_pred C-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHH
Q 025257 79 L-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRA 156 (255)
Q Consensus 79 ~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~ 156 (255)
| |++|+.+.|+|+.+|+ +|++++.|++|.++++ ++|.+..+||++ +.++.+.+++..+.++|+.||.+|+.. ++.
T Consensus 162 AsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~-e~~~~~aL~r~~P~GIDiYfeNVGG~~-lDa 238 (343)
T KOG1196|consen 162 ASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE-ESDLSAALKRCFPEGIDIYFENVGGKM-LDA 238 (343)
T ss_pred ccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccC-ccCHHHHHHHhCCCcceEEEeccCcHH-HHH
Confidence 7 9999999999999999 9999999999999995 579999999998 238888888877779999999999998 999
Q ss_pred HHHHhccCCceEEEEccCCC---CCcccc-C-chhhccCcEEEEeeeCCCCc--cCcHHHHHHHHHcCCCCCCCcceeee
Q 025257 157 ALECCHKGWGTSVIVGVAAS---GQEIST-R-PFQLVTGRVWKGTAFGGFKS--RSQVPWLVDKYMKKEIKVDEYVTHNM 229 (255)
Q Consensus 157 ~~~~l~~~~G~~v~~g~~~~---~~~~~~-~-~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (255)
.+..|+.. ||++.||..+- ..+..+ + ...+.+++++.|+....+.+ .+.+..+..++++|+++..+.+..
T Consensus 239 vl~nM~~~-gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi~~-- 315 (343)
T KOG1196|consen 239 VLLNMNLH-GRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDIAD-- 315 (343)
T ss_pred HHHhhhhc-cceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhHHH--
Confidence 99999996 99999997541 111111 1 22244588898987665542 234566778889999988766643
Q ss_pred ecchHHHHHHHhhCCCee-EEEEecC
Q 025257 230 TLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
.|++.++||.-|.+++.. |.++.+.
T Consensus 316 Glen~P~A~vglf~GkNvGKqiv~va 341 (343)
T KOG1196|consen 316 GLENGPSALVGLFHGKNVGKQLVKVA 341 (343)
T ss_pred HHhccHHHHHHHhccCcccceEEEee
Confidence 599999999999888876 8888764
|
|
| >cd08252 AL_MDR Arginate lyase and other MDR family members | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=189.95 Aligned_cols=240 Identities=16% Similarity=0.174 Sum_probs=191.6
Q ss_pred CCCCCccccCCccccccc---CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCC-----CCEE
Q 025257 3 NDRKSRFSINGKPIYHFM---GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIV 74 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~v 74 (255)
|.++..|++ ||+|+... ..|+|++|+.++..+++++|+++++++++.+++.+.|||+++.+...+++ +++|
T Consensus 75 G~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~v 153 (336)
T cd08252 75 GSEVTLFKV-GDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTL 153 (336)
T ss_pred CCCCCCCCC-CCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEE
Confidence 556667888 99998753 35999999999999999999999999999999999999999888888887 9999
Q ss_pred EEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 75 AVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 75 lI~G~-g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+|+|+ |++|++++++++.+| + +|+++++++++.++++++|++++++++ .++.+.+....++++|+++|++|.+.
T Consensus 154 lV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~i~~~~~~~~d~vl~~~~~~~ 229 (336)
T cd08252 154 LIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKELGADHVINHH---QDLAEQLEALGIEPVDYIFCLTDTDQ 229 (336)
T ss_pred EEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHhcCCcEEEeCC---ccHHHHHHhhCCCCCCEEEEccCcHH
Confidence 99986 999999999999999 8 999999999999999999999888876 34556666443338999999999765
Q ss_pred HHHHHHHHhccCCceEEEEccCCCCCccccCchhh-ccCcEEEEeeeCCCC--c-------cCcHHHHHHHHHcCCCCCC
Q 025257 153 VMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFK--S-------RSQVPWLVDKYMKKEIKVD 222 (255)
Q Consensus 153 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~ 222 (255)
.+..++++++.+ |+++.+|... ..++...+ .++.++.+..+.... . .+.++++++++.++.+.+.
T Consensus 230 ~~~~~~~~l~~~-g~~v~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (336)
T cd08252 230 HWDAMAELIAPQ-GHICLIVDPQ----EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTT 304 (336)
T ss_pred HHHHHHHHhcCC-CEEEEecCCC----CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecc
Confidence 599999999996 9999998642 23444444 347777776543211 1 1346788899999987643
Q ss_pred Cc-ceeeeecchHHHHHHHhhCCCee-EEEEe
Q 025257 223 EY-VTHNMTLGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 223 ~~-~~~~~~~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
.. ....++++++++|++.+.+++.. |++++
T Consensus 305 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 336 (336)
T cd08252 305 LTETLGPINAENLREAHALLESGKTIGKIVLE 336 (336)
T ss_pred eeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence 11 12357999999999999887766 88763
|
This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=190.72 Aligned_cols=216 Identities=20% Similarity=0.304 Sum_probs=175.5
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG 100 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~ 100 (255)
.|+|++|+.++.+.++++|+++++++++.+++++.+||+++... .++++++|+|+|+ |.+|++++++++..|+ ++++
T Consensus 115 ~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~ 192 (334)
T PRK13771 115 DGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIA 192 (334)
T ss_pred CceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEE
Confidence 58999999999999999999999999999999999999988655 8999999999998 9999999999999999 9999
Q ss_pred EcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcc
Q 025257 101 IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180 (255)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 180 (255)
+++++++.+.++++ ++++++.+ ++.+.+++. +++|+++||+|+.. +...+++++++ |+++.+|........
T Consensus 193 ~~~~~~~~~~~~~~-~~~~~~~~----~~~~~v~~~--~~~d~~ld~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~ 263 (334)
T PRK13771 193 VTSSESKAKIVSKY-ADYVIVGS----KFSEEVKKI--GGADIVIETVGTPT-LEESLRSLNMG-GKIIQIGNVDPSPTY 263 (334)
T ss_pred EeCCHHHHHHHHHH-HHHhcCch----hHHHHHHhc--CCCcEEEEcCChHH-HHHHHHHHhcC-CEEEEEeccCCCCCc
Confidence 99999999999888 76666543 345556554 26999999999876 89999999996 999999975432221
Q ss_pred ccCchh-hccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 181 STRPFQ-LVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 181 ~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
+..... +.++.++.+... ...+++++++++++++.+.. .+.++|+++++++|++.+.++... |+++.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 333 (334)
T PRK13771 264 SLRLGYIILKDIEIIGHIS---ATKRDVEEALKLVAEGKIKP--VIGAEVSLSEIDKALEELKDKSRIGKILVKP 333 (334)
T ss_pred ccCHHHHHhcccEEEEecC---CCHHHHHHHHHHHHcCCCcc--eEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence 222222 334778877642 23367889999999998653 366789999999999999877655 998865
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=190.79 Aligned_cols=233 Identities=24% Similarity=0.310 Sum_probs=186.2
Q ss_pred ccccCCcccccccCccceeeEEEEcC-CceEEcCCCCC--cccccc-cccchhhhhhHHHhhcCCCCCCEEEEEcC-ChH
Q 025257 8 RFSINGKPIYHFMGTSTFSQYTVVHD-VSVAKIDPQAP--LDKVCL-LGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTV 82 (255)
Q Consensus 8 ~~~~~g~~v~~~~~~g~~ae~~~v~~-~~~~~~p~~~~--~~~aa~-~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~v 82 (255)
.+++ ||+|+++ ++|++|+.++. +.++++|++++ +.+++. +++++.|||+++.....+.++++|||+|+ |++
T Consensus 83 ~~~~-Gd~V~~~---~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~i 158 (329)
T cd05288 83 DFKV-GDLVSGF---LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAV 158 (329)
T ss_pred CCCC-CCEEecc---cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchH
Confidence 4667 8998865 48999999999 99999999985 445544 88899999999888888999999999996 999
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHh
Q 025257 83 GLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECC 161 (255)
Q Consensus 83 G~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l 161 (255)
|++++|+++..|+ +|+++++++++.+.+++ +|++.++++++ .++.+.+.+.+++++|+++||+|+.. +...++++
T Consensus 159 g~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~v~~~~~~~~d~vi~~~g~~~-~~~~~~~l 234 (329)
T cd05288 159 GSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINYKT--PDLAEALKEAAPDGIDVYFDNVGGEI-LDAALTLL 234 (329)
T ss_pred HHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcCCceEEecCC--hhHHHHHHHhccCCceEEEEcchHHH-HHHHHHhc
Confidence 9999999999999 99999999999999988 99998998876 77888888777558999999999866 99999999
Q ss_pred ccCCceEEEEccCCCCCccc----cCch-hhccCcEEEEeeeCCCCc--cCcHHHHHHHHHcCCCCCCCcceeeeecchH
Q 025257 162 HKGWGTSVIVGVAASGQEIS----TRPF-QLVTGRVWKGTAFGGFKS--RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEI 234 (255)
Q Consensus 162 ~~~~G~~v~~g~~~~~~~~~----~~~~-~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (255)
+++ |+++.+|......... ++.. .+.++.++.++....... .+.+.++++++.++.+++.+ ..+++++++
T Consensus 235 ~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~~~~~l~~~ 311 (329)
T cd05288 235 NKG-GRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRE--DVVEGLENA 311 (329)
T ss_pred CCC-ceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccc--cccccHHHH
Confidence 997 9999998754321111 1222 234488888776543321 13467788999999876553 356899999
Q ss_pred HHHHHHhhCCCee-EEEE
Q 025257 235 NEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 235 ~~a~~~~~~~~~~-k~vi 251 (255)
+++++.+.+++.. |+++
T Consensus 312 ~~a~~~~~~~~~~gkvvv 329 (329)
T cd05288 312 PEAFLGLFTGKNTGKLVV 329 (329)
T ss_pred HHHHHHHhcCCCccceeC
Confidence 9999998877655 7763
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-26 Score=186.69 Aligned_cols=240 Identities=19% Similarity=0.270 Sum_probs=197.1
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-Ch
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GT 81 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~ 81 (255)
|.++..+++ ||+|+++..+|+|++|+.++...++++|+++++++++.++.++.++|+++.+...+.++++|+|+|+ |+
T Consensus 73 g~~~~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ 151 (323)
T cd05276 73 GPGVTGWKV-GDRVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASG 151 (323)
T ss_pred CCCCCCCCC-CCEEEEecCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcCh
Confidence 455667788 9999987667999999999999999999999999999999999999999888888999999999997 99
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHH
Q 025257 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 82 vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~ 160 (255)
+|++++++++..|+ +|+++++++++.+.++++|++.+++... .++.+.+.+.+.+ ++|+++|+.|+.. +...+++
T Consensus 152 ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~ 227 (323)
T cd05276 152 VGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINYRT--EDFAEEVKEATGGRGVDVILDMVGGDY-LARNLRA 227 (323)
T ss_pred HHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCc--hhHHHHHHHHhCCCCeEEEEECCchHH-HHHHHHh
Confidence 99999999999999 9999999989999998899988888776 6787888777766 8999999999887 8889999
Q ss_pred hccCCceEEEEccCCCCCccccCchhh-ccCcEEEEeeeCCCCc-------cCcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 161 CHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKS-------RSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
++++ |+++.+|..... ....+...+ .++.++.++....... ...+.++++++.++.+.+ ...+.|+++
T Consensus 228 ~~~~-g~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 303 (323)
T cd05276 228 LAPD-GRLVLIGLLGGA-KAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRP--VIDKVFPLE 303 (323)
T ss_pred hccC-CEEEEEecCCCC-CCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccC--CcceEEcHH
Confidence 9996 999999875332 233444444 3588888887554311 123466778888888643 356789999
Q ss_pred hHHHHHHHhhCCCee-EEEE
Q 025257 233 EINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 233 ~~~~a~~~~~~~~~~-k~vi 251 (255)
++++|++.+.++... |+++
T Consensus 304 ~~~~a~~~~~~~~~~~kvv~ 323 (323)
T cd05276 304 EAAEAHRRMESNEHIGKIVL 323 (323)
T ss_pred HHHHHHHHHHhCCCcceEeC
Confidence 999999999876655 7763
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=187.25 Aligned_cols=209 Identities=20% Similarity=0.221 Sum_probs=171.4
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||+.++.+.++++|+++++.+++.+++++.|||+++ +..+++++++|+|+|+|++|++++++++..|+ +|+++
T Consensus 120 ~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~ 197 (329)
T cd08298 120 DGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAF 197 (329)
T ss_pred CCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEE
Confidence 58999999999999999999999999999999999999988 88999999999999989999999999999999 99999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~ 181 (255)
++++++++.++++|++.+++.++ . .++++|+++++.+....++.++++++++ |+++.+|.... ....
T Consensus 198 ~~~~~~~~~~~~~g~~~~~~~~~--~---------~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~ 264 (329)
T cd08298 198 TRSGEHQELARELGADWAGDSDD--L---------PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVLAGIHMS-DIPA 264 (329)
T ss_pred cCChHHHHHHHHhCCcEEeccCc--c---------CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEEEcCCCC-CCCc
Confidence 99999999999999988877654 2 1237999999877666699999999996 99999885321 1222
Q ss_pred cCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEE
Q 025257 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 182 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi 251 (255)
++...+..+..+.++... ..+.+.+++++++++.+++ . .++|+++++++|++.+.+++.. |+++
T Consensus 265 ~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~l~~--~-~~~~~~~~~~~a~~~~~~~~~~~~~v~ 329 (329)
T cd08298 265 FDYELLWGEKTIRSVANL---TRQDGEEFLKLAAEIPIKP--E-VETYPLEEANEALQDLKEGRIRGAAVL 329 (329)
T ss_pred cchhhhhCceEEEEecCC---CHHHHHHHHHHHHcCCCCc--e-EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence 333333346666665422 2256888999999998754 2 4789999999999999887766 8764
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=186.94 Aligned_cols=221 Identities=21% Similarity=0.297 Sum_probs=184.6
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG 100 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~ 100 (255)
.|++++|++++.+.++++|+++++++++.+++++.+|++++.+..++.++++++|+|+ +.+|++++++++..|+ +|+.
T Consensus 118 ~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~ 196 (342)
T cd08266 118 DGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIA 196 (342)
T ss_pred CcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEE
Confidence 5889999999999999999999999999999999999999888889999999999998 7999999999999999 9999
Q ss_pred EcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCc
Q 025257 101 IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 179 (255)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 179 (255)
+++++++.+.+++.+.+.+++..+ .++.+.+.+.+.+ ++|++++++|... ++..+++++++ |+++.+|..... .
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~g~~~-~~~~~~~l~~~-G~~v~~~~~~~~-~ 271 (342)
T cd08266 197 TAGSEDKLERAKELGADYVIDYRK--EDFVREVRELTGKRGVDVVVEHVGAAT-WEKSLKSLARG-GRLVTCGATTGY-E 271 (342)
T ss_pred EeCCHHHHHHHHHcCCCeEEecCC--hHHHHHHHHHhCCCCCcEEEECCcHHH-HHHHHHHhhcC-CEEEEEecCCCC-C
Confidence 999999999998888887887765 6777777777766 8999999999876 89999999996 999999875432 2
Q ss_pred cccCchh-hccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 180 ISTRPFQ-LVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 180 ~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
..++... +.++.++.+..... ...+.+++++++++.+.+ .+.++|+++++++|++.+.++... |+++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 342 (342)
T cd08266 272 APIDLRHVFWRQLSILGSTMGT---KAELDEALRLVFRGKLKP--VIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342 (342)
T ss_pred CCcCHHHHhhcceEEEEEecCC---HHHHHHHHHHHHcCCccc--ceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 2344422 44488887776432 246888999999998553 366789999999999998877666 988863
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=185.57 Aligned_cols=242 Identities=19% Similarity=0.281 Sum_probs=196.3
Q ss_pred CCCCCCccccCCccccccc-----CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEE
Q 025257 2 MNDRKSRFSINGKPIYHFM-----GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 76 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~-----~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI 76 (255)
+|+++..|++ ||+|+++. ..|++++|+.++...++++|+++++++++.+++++.+||+++....++.++++++|
T Consensus 72 ~g~~~~~~~~-Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI 150 (325)
T cd08253 72 VGEGVDGLKV-GDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLV 150 (325)
T ss_pred eCCCCCCCCC-CCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEE
Confidence 3566777888 99998764 26899999999999999999999999999999999999999888889999999999
Q ss_pred EcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHH
Q 025257 77 FGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVM 154 (255)
Q Consensus 77 ~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~ 154 (255)
+|+ |++|++++++++..|+ +|+++++++++.+.++++|++.+++... .++.+.+.+.+.+ ++|+++++++... .
T Consensus 151 ~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~~~~~-~ 226 (325)
T cd08253 151 HGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNYRA--EDLADRILAATAGQGVDVIIEVLANVN-L 226 (325)
T ss_pred EcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC--cCHHHHHHHHcCCCceEEEEECCchHH-H
Confidence 997 9999999999999999 9999999999999999999988888776 7788888877766 8999999999876 8
Q ss_pred HHHHHHhccCCceEEEEccCCCCCccccCchh-hccCcEEEEeeeCCCCc---cCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 155 RAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
...+++++.+ |+++.+|... ...+++... +.++.++.+........ ...+..+.+++.++.+.+. ...+|+
T Consensus 227 ~~~~~~l~~~-g~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~ 301 (325)
T cd08253 227 AKDLDVLAPG-GRIVVYGSGG--LRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRPV--IAREYP 301 (325)
T ss_pred HHHHHhhCCC-CEEEEEeecC--CcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEEc
Confidence 8899999996 9999998754 223444444 33377776665332211 1234556667777775443 457899
Q ss_pred cchHHHHHHHhhCCCee-EEEEec
Q 025257 231 LGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
+++++++++.+..+... |+++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~kvv~~~ 325 (325)
T cd08253 302 LEEAAAAHEAVESGGAIGKVVLDP 325 (325)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeC
Confidence 99999999999877666 888763
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >cd05195 enoyl_red enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=184.89 Aligned_cols=240 Identities=18% Similarity=0.244 Sum_probs=193.2
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-Ch
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GT 81 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~ 81 (255)
|.++.++++ ||+|+++. .|+|+||+.++...++++|+++++.+++.+++++.+||.++.+...++++++|+|+|+ |+
T Consensus 43 g~~~~~~~~-Gd~V~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~ 120 (293)
T cd05195 43 GSGVTGLKV-GDRVMGLA-PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGG 120 (293)
T ss_pred cCCccCCCC-CCEEEEEe-cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCH
Confidence 556667888 99998764 5899999999999999999999999999999999999999888889999999999986 99
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC--CcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHH
Q 025257 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG--VTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAAL 158 (255)
Q Consensus 82 vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g--~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~ 158 (255)
+|++++++++..|+ +++++++++++.+.++++| ++.++++.+ .++.+.+++.+.+ ++|+++|++|++. ++..+
T Consensus 121 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~ 196 (293)
T cd05195 121 VGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD--LSFADGILRATGGRGVDVVLNSLSGEL-LRASW 196 (293)
T ss_pred HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc--hhHHHHHHHHhCCCCceEEEeCCCchH-HHHHH
Confidence 99999999999999 9999999989999998888 677888776 7788888888877 8999999999985 99999
Q ss_pred HHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCC--c----cCcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 159 ECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK--S----RSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 159 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
++++++ |+++.+|.........+....+.++..+....+.... . .+.+.++++++.++.+. +.....++++
T Consensus 197 ~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 273 (293)
T cd05195 197 RCLAPF-GRFVEIGKRDILSNSKLGMRPFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLK--PLPPTVVPSA 273 (293)
T ss_pred HhcccC-ceEEEeeccccccCCccchhhhccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcc--cCCCeeechh
Confidence 999996 9999998754321122333333335566555433221 0 12467788888888864 3455679999
Q ss_pred hHHHHHHHhhCCCee-EEEE
Q 025257 233 EINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 233 ~~~~a~~~~~~~~~~-k~vi 251 (255)
+++++++.+..+... |+++
T Consensus 274 ~~~~a~~~~~~~~~~~~ivv 293 (293)
T cd05195 274 SEIDAFRLMQSGKHIGKVVL 293 (293)
T ss_pred hHHHHHHHHhcCCCCceecC
Confidence 999999999877665 7763
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=186.04 Aligned_cols=233 Identities=27% Similarity=0.402 Sum_probs=187.0
Q ss_pred CCCCCccccCCccccccc---------------------------CccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYHFM---------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++..+.+ ||+|+++. ..|+|++|++++...++++|+++++++++.+++++
T Consensus 70 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~ 148 (332)
T cd08259 70 GEGVERFKP-GDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVV 148 (332)
T ss_pred CCCCccCCC-CCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHH
Confidence 556667778 88888653 25899999999999999999999999999999999
Q ss_pred hhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHH
Q 025257 56 PTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
.|||+++.. ..+++++++||+|+ |++|++++++++..|+ +|+++++++++.+.++++|.+.+++.. . +.+.+.
T Consensus 149 ~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ 222 (332)
T cd08259 149 GTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS---K-FSEDVK 222 (332)
T ss_pred HHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecH---H-HHHHHH
Confidence 999998866 88999999999997 9999999999999999 999999998999999888988777653 3 556665
Q ss_pred hhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchh-hccCcEEEEeeeCCCCccCcHHHHHHH
Q 025257 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKSRSQVPWLVDK 213 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 213 (255)
+.. ++|++++++|... ....+++++++ |+++.+|...... ..++... .+++.++.++.. .....+.+++++
T Consensus 223 ~~~--~~d~v~~~~g~~~-~~~~~~~~~~~-g~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 294 (332)
T cd08259 223 KLG--GADVVIELVGSPT-IEESLRSLNKG-GRLVLIGNVTPDP-APLRPGLLILKEIRIIGSIS---ATKADVEEALKL 294 (332)
T ss_pred hcc--CCCEEEECCChHH-HHHHHHHhhcC-CEEEEEcCCCCCC-cCCCHHHHHhCCcEEEEecC---CCHHHHHHHHHH
Confidence 543 6999999999887 88999999996 9999998754321 1122222 234666666531 123568889999
Q ss_pred HHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEe
Q 025257 214 YMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
++++.+.+ .+.++|+++++++|++.+.+++.. |++++
T Consensus 295 ~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 332 (332)
T cd08259 295 VKEGKIKP--VIDRVVSLEDINEALEDLKSGKVVGRIVLK 332 (332)
T ss_pred HHcCCCcc--ceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence 99998653 366789999999999999887766 88864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=185.55 Aligned_cols=241 Identities=17% Similarity=0.247 Sum_probs=197.7
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-Ch
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GT 81 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~ 81 (255)
|+++..+++ ||+|+++..+|++++|+.++...++++|+++++.+++.++.++.+||+++.+...++++++++|+|+ |+
T Consensus 73 g~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~ 151 (325)
T TIGR02824 73 GEGVSRWKV-GDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASG 151 (325)
T ss_pred CCCCCCCCC-CCEEEEccCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcch
Confidence 455667788 9999987666999999999999999999999999999999999999998888899999999999997 99
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHH
Q 025257 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 82 vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~ 160 (255)
+|++++++++..|+ +|+++++++++.+.++++|++.+++... .++.+.+.....+ ++|++++++|... +...+++
T Consensus 152 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~ 227 (325)
T TIGR02824 152 IGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAINYRE--EDFVEVVKAETGGKGVDVILDIVGGSY-LNRNIKA 227 (325)
T ss_pred HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCc--hhHHHHHHHHcCCCCeEEEEECCchHH-HHHHHHh
Confidence 99999999999999 9999999999999888899888887765 6787888877766 8999999999875 8899999
Q ss_pred hccCCceEEEEccCCCCCccccCchhh-ccCcEEEEeeeCCCCc-------cCcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 161 CHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKS-------RSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
++++ |+++.+|....... .++...+ .++.++.++....... ...+.+++++++++.+.+ .....|+++
T Consensus 228 l~~~-g~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~ 303 (325)
T TIGR02824 228 LALD-GRIVQIGFQGGRKA-ELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRP--VIDKVFPLE 303 (325)
T ss_pred hccC-cEEEEEecCCCCcC-CCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccC--ccccEEeHH
Confidence 9996 99999987542222 4444444 4599998887554211 112455778888887643 355789999
Q ss_pred hHHHHHHHhhCCCee-EEEEe
Q 025257 233 EINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 233 ~~~~a~~~~~~~~~~-k~vi~ 252 (255)
+++++++.+.++... |++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~v~~ 324 (325)
T TIGR02824 304 DAAQAHALMESGDHIGKIVLT 324 (325)
T ss_pred HHHHHHHHHHhCCCcceEEEe
Confidence 999999998877666 88875
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=184.85 Aligned_cols=204 Identities=25% Similarity=0.375 Sum_probs=169.9
Q ss_pred CCCCCccccCCccccccc----------------------------CccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 3 NDRKSRFSINGKPIYHFM----------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~----------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
|+++..|++ ||+|++.. ..|+|+||++++..+++++|+++++++++ ++.+
T Consensus 71 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~ 148 (306)
T cd08258 71 GPDVEGWKV-GDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEP 148 (306)
T ss_pred CCCcCcCCC-CCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhch
Confidence 566777888 99887643 24899999999999999999999999887 6668
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC--CcchHHHHHhcCCcEEeCCCCCCchHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRAKNFGVTEFVNPKDHDKPIQQV 132 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~--~~~~~~~~~~~g~~~vi~~~~~~~~~~~~ 132 (255)
+.+||+++....+++++++|||.|+|.+|++++|+++..|+ +|++++. ++++.+.++++|++.+ ++++ .++.+.
T Consensus 149 ~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~--~~~~~~ 224 (306)
T cd08258 149 LAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-NGGE--EDLAEL 224 (306)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-CCCc--CCHHHH
Confidence 89999998888999999999998889999999999999999 8877743 4457778889999888 7776 788888
Q ss_pred HHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHH
Q 025257 133 LVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWL 210 (255)
Q Consensus 133 i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~ 210 (255)
+...+++ ++|+++|++|....+...+++++++ |+++.+|... .....++...++. ++++.|++.+.. ++++++
T Consensus 225 l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~ 299 (306)
T cd08258 225 VNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFG-PLAASIDVERIIQKELSVIGSRSSTP---ASWETA 299 (306)
T ss_pred HHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccC-CCCcccCHHHHhhcCcEEEEEecCch---HhHHHH
Confidence 8887776 8999999998766689999999997 9999999864 2334556566554 999999987544 679999
Q ss_pred HHHHHcC
Q 025257 211 VDKYMKK 217 (255)
Q Consensus 211 ~~~~~~~ 217 (255)
++++++|
T Consensus 300 ~~~~~~~ 306 (306)
T cd08258 300 LRLLASG 306 (306)
T ss_pred HHHHhcC
Confidence 9998875
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=185.84 Aligned_cols=215 Identities=27% Similarity=0.404 Sum_probs=174.0
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEE
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 100 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~ 100 (255)
..|+|++|+.++..+++++|+++++++++.+++.+.|||+++.. .+++++++|+|+|+|++|++++++++..|+ +|++
T Consensus 114 ~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~ 191 (330)
T cd08245 114 TQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVA 191 (330)
T ss_pred cCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEE
Confidence 35899999999999999999999999999999999999998744 789999999999888899999999999999 9999
Q ss_pred EcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcc
Q 025257 101 IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180 (255)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 180 (255)
+++++++.+.++++|++.+++..+ ...... ..+++|+++|+++........+++++++ |+++.++..... ..
T Consensus 192 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~~~~~~-~~ 263 (330)
T cd08245 192 ITRSPDKRELARKLGADEVVDSGA--ELDEQA----AAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESP-PF 263 (330)
T ss_pred EeCCHHHHHHHHHhCCcEEeccCC--cchHHh----ccCCCCEEEECCCcHHHHHHHHHhcccC-CEEEEECCCCCC-cc
Confidence 999999999999999988887664 433332 2237999999988766689999999996 999999875322 22
Q ss_pred ccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEE
Q 025257 181 STRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 181 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi 251 (255)
..+...+.. +.++.++..+. ...++.++++++++.+.+ ..++|+++++++|++.+.+++.. |+|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~ 330 (330)
T cd08245 264 SPDIFPLIMKRQSIAGSTHGG---RADLQEALDFAAEGKVKP---MIETFPLDQANEAYERMEKGDVRFRFVL 330 (330)
T ss_pred ccchHHHHhCCCEEEEeccCC---HHHHHHHHHHHHcCCCcc---eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence 222233433 77777776432 257888899999998754 24689999999999999887766 7764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=181.17 Aligned_cols=228 Identities=26% Similarity=0.380 Sum_probs=178.3
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCCh
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT 81 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~ 81 (255)
.|+++.++++ ||+|+++ ++|++|++++...++++|+++++++++.+ .+++|||+++ ...+++++++++|+|+|+
T Consensus 35 vG~~v~~~~~-Gd~V~~~---~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~ 108 (277)
T cd08255 35 VGSGVTGFKP-GDRVFCF---GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGL 108 (277)
T ss_pred eCCCCCCCCC-CCEEEec---CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCH
Confidence 3566778888 9999876 46999999999999999999999998888 6899999986 578999999999998899
Q ss_pred HHHHHHHHHHHcCCCe-EEEEcCCcchHHHHHhcC-CcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHH
Q 025257 82 VGLAVAEGAKAAGASR-VIGIDIDPKKFDRAKNFG-VTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAAL 158 (255)
Q Consensus 82 vG~~a~~l~~~~g~~~-v~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~ 158 (255)
+|++++++|+.+|+ + |+++++++++.+.++++| ++.+++..+ ..+.+ ++|++||+++....++..+
T Consensus 109 vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~d~vl~~~~~~~~~~~~~ 177 (277)
T cd08255 109 VGLLAAQLAKAAGA-REVVGVDPDAARRELAEALGPADPVAADTA----------DEIGGRGADVVIEASGSPSALETAL 177 (277)
T ss_pred HHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHHcCCCccccccch----------hhhcCCCCCEEEEccCChHHHHHHH
Confidence 99999999999999 6 999999999999889999 555554331 11234 8999999988766689999
Q ss_pred HHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCC---------ccCcHHHHHHHHHcCCCCCCCcceee
Q 025257 159 ECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFK---------SRSQVPWLVDKYMKKEIKVDEYVTHN 228 (255)
Q Consensus 159 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (255)
++++++ |+++.+|..... .... ...+.. ..++.+....... ..+.++++++++.++.+.. .+.++
T Consensus 178 ~~l~~~-g~~~~~g~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~ 252 (277)
T cd08255 178 RLLRDR-GRVVLVGWYGLK-PLLL-GEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEA--LITHR 252 (277)
T ss_pred HHhcCC-cEEEEEeccCCC-cccc-HHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCccc--cccCc
Confidence 999997 999999875432 1111 122332 5566666543211 1256889999999998543 35678
Q ss_pred eecchHHHHHHHhhCC--CeeEEEE
Q 025257 229 MTLGEINEAFRYMHGG--DCLRCVL 251 (255)
Q Consensus 229 ~~~~~~~~a~~~~~~~--~~~k~vi 251 (255)
|+++++++|++.+.++ ..+|+++
T Consensus 253 ~~~~~~~~a~~~~~~~~~~~~k~~~ 277 (277)
T cd08255 253 VPFEDAPEAYRLLFEDPPECLKVVL 277 (277)
T ss_pred cCHHHHHHHHHHHHcCCccceeeeC
Confidence 9999999999999877 3448764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=182.76 Aligned_cols=237 Identities=16% Similarity=0.188 Sum_probs=183.9
Q ss_pred CCCccccCCccccccc------CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHH--hhcCCC-CCCEEE
Q 025257 5 RKSRFSINGKPIYHFM------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW--NTAKVE-PGSIVA 75 (255)
Q Consensus 5 ~~~~~~~~g~~v~~~~------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~-~~~~vl 75 (255)
++.++++ ||+|++.. ..|+|++|++++.+.++++|+++++++++.++.++++|+.++. +....+ ++++|+
T Consensus 73 ~~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vl 151 (324)
T cd08288 73 SSPRFKP-GDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVL 151 (324)
T ss_pred CCCCCCC-CCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEE
Confidence 3455777 99998752 3689999999999999999999999999999999999987754 223455 678999
Q ss_pred EEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHH
Q 025257 76 VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM 154 (255)
Q Consensus 76 I~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~ 154 (255)
|+|+ |++|++++|+|+.+|+ +|++++.++++.+.++++|+++++++++ ... .+...+.+++|.++|+++++. +
T Consensus 152 I~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~~--~~~~~~~~~~~~~~d~~~~~~-~ 225 (324)
T cd08288 152 VTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEIIDRAE--LSE--PGRPLQKERWAGAVDTVGGHT-L 225 (324)
T ss_pred EECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCEEEEcch--hhH--hhhhhccCcccEEEECCcHHH-H
Confidence 9998 9999999999999999 9999999999999999999999988764 322 455555447899999999865 7
Q ss_pred HHHHHHhccCCceEEEEccCCCCCccccCchhh-ccCcEEEEeeeCCCCc---cCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 155 RAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
...+..++.+ |+++.+|.... ...+.+...+ .++.++.+++...... .+.+..+.+++.++.+.+ +.+.++
T Consensus 226 ~~~~~~~~~~-g~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~ 300 (324)
T cd08288 226 ANVLAQTRYG-GAVAACGLAGG-ADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEA---LTREIP 300 (324)
T ss_pred HHHHHHhcCC-CEEEEEEecCC-CCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCccc---cceeec
Confidence 8888999996 99999987532 2223344444 4588888875433221 124556667777777543 357899
Q ss_pred cchHHHHHHHhhCCCee-EEEEec
Q 025257 231 LGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++++|++.+.+++.. |+++++
T Consensus 301 ~~~~~~a~~~~~~~~~~~~vvv~~ 324 (324)
T cd08288 301 LADVPDAAEAILAGQVRGRVVVDV 324 (324)
T ss_pred HHHHHHHHHHHhcCCccCeEEEeC
Confidence 99999999999888776 988863
|
Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal |
| >cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=183.45 Aligned_cols=237 Identities=20% Similarity=0.278 Sum_probs=192.0
Q ss_pred CCCCCccccCCccccccc-----CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 3 NDRKSRFSINGKPIYHFM-----GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~-----~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
|+++..|+. ||+|+++. ..|++++|+.++..+++++|+++++.+++.++..+.+||+++.+..+++++++++|+
T Consensus 73 G~~~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~ 151 (326)
T cd08272 73 GEGVTRFRV-GDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIH 151 (326)
T ss_pred CCCCCCCCC-CCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 556677888 99999764 268999999999999999999999999999999999999998888999999999999
Q ss_pred cC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHH
Q 025257 78 GL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMR 155 (255)
Q Consensus 78 G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~ 155 (255)
|+ |++|++++++++..|+ +|++++++ ++.+.++++|++.+++... . +.+.+.+.+++ ++|+++|++++.. ..
T Consensus 152 g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~--~-~~~~~~~~~~~~~~d~v~~~~~~~~-~~ 225 (326)
T cd08272 152 GGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIYYRE--T-VVEYVAEHTGGRGFDVVFDTVGGET-LD 225 (326)
T ss_pred cCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEecch--h-HHHHHHHhcCCCCCcEEEECCChHH-HH
Confidence 86 9999999999999999 99999987 8888999999988888765 5 77888888877 8999999999876 88
Q ss_pred HHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCC--CC------ccCcHHHHHHHHHcCCCCCCCcce-
Q 025257 156 AALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGG--FK------SRSQVPWLVDKYMKKEIKVDEYVT- 226 (255)
Q Consensus 156 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~- 226 (255)
..+++++++ |+++.+|... ..++... ..++.++.++.... .. ....+.++++++.++.+.+ .+.
T Consensus 226 ~~~~~l~~~-g~~v~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~ 298 (326)
T cd08272 226 ASFEAVALY-GRVVSILGGA---THDLAPL-SFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRP--LLDP 298 (326)
T ss_pred HHHHHhccC-CEEEEEecCC---ccchhhH-hhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCccc--cccc
Confidence 899999996 9999998753 1222222 13477776665332 10 1234667888888888643 233
Q ss_pred eeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 227 HNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
+.|++++++++++.+.+++.. |+++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 326 (326)
T cd08272 299 RTFPLEEAAAAHARLESGSARGKIVIDV 326 (326)
T ss_pred ceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence 789999999999998876655 888763
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=182.18 Aligned_cols=243 Identities=22% Similarity=0.347 Sum_probs=195.1
Q ss_pred CCCCCCccccCCccccccc-----CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEE
Q 025257 2 MNDRKSRFSINGKPIYHFM-----GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 76 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~-----~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI 76 (255)
.|+++..+++ ||+|+++. ..|++++|+.++.+.++++|+++++++++.++.++.+||+++.....+.++++++|
T Consensus 72 ~G~~~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli 150 (328)
T cd08268 72 VGAGVTGFAV-GDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLI 150 (328)
T ss_pred eCCCCCcCCC-CCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEE
Confidence 3566777888 99998763 24899999999999999999999999999999999999999888889999999999
Q ss_pred EcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHH
Q 025257 77 FGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVM 154 (255)
Q Consensus 77 ~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~ 154 (255)
+|+ |++|++++++++..|+ +++.+++++++.+.++++|++.+++.+. .++.+.+.+.+.+ ++|++++++++.. .
T Consensus 151 ~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~~~~~-~ 226 (328)
T cd08268 151 TAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVTDE--EDLVAEVLRITGGKGVDVVFDPVGGPQ-F 226 (328)
T ss_pred ecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEecCC--ccHHHHHHHHhCCCCceEEEECCchHh-H
Confidence 997 9999999999999999 9999999999999998899888888776 7787778777766 8999999999966 8
Q ss_pred HHHHHHhccCCceEEEEccCCCCCccccCch-hhccCcEEEEeeeCCCC-ccC----cHHHHHHHHHcCCCCCCCcceee
Q 025257 155 RAALECCHKGWGTSVIVGVAASGQEISTRPF-QLVTGRVWKGTAFGGFK-SRS----QVPWLVDKYMKKEIKVDEYVTHN 228 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~ 228 (255)
...+++++++ |+++.+|.... ....++.. .+.++.++.++...... ... .++.+.+++.++.+.+. ....
T Consensus 227 ~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 302 (328)
T cd08268 227 AKLADALAPG-GTLVVYGALSG-EPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKPV--VDRV 302 (328)
T ss_pred HHHHHhhccC-CEEEEEEeCCC-CCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcCC--cccE
Confidence 8999999996 99999987543 22233333 34458888777654321 112 23445556667775443 4568
Q ss_pred eecchHHHHHHHhhCCCee-EEEEec
Q 025257 229 MTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
|++++++++++.+..+... |+++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~vv~~~ 328 (328)
T cd08268 303 FPFDDIVEAHRYLESGQQIGKIVVTP 328 (328)
T ss_pred EcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 9999999999999877766 888763
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=184.52 Aligned_cols=225 Identities=24% Similarity=0.322 Sum_probs=177.7
Q ss_pred CCCCCccccCCcccccc---------------------------cCccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYHF---------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~---------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++..+++ ||+|+.+ ...|+|++|++++...++++|+++++++++.+++++
T Consensus 70 G~~v~~~~~-Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~ 148 (325)
T cd08264 70 GDHVKGVKK-GDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAA 148 (325)
T ss_pred CCCCCCCCC-CCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhh
Confidence 556666777 8888643 135899999999999999999999999999999999
Q ss_pred hhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHH
Q 025257 56 PTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
.+||+++. ..+++++++|+|+|+ |++|++++++|+.+|+ +|+++++ .+.++++|++++++.++ ..+.+.
T Consensus 149 ~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~----~~~~~~~g~~~~~~~~~----~~~~l~ 218 (325)
T cd08264 149 LTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR----KDWLKEFGADEVVDYDE----VEEKVK 218 (325)
T ss_pred HHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH----HHHHHHhCCCeeecchH----HHHHHH
Confidence 99999875 489999999999998 9999999999999999 8888863 37778899988887653 245566
Q ss_pred hhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHH
Q 025257 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDK 213 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ 213 (255)
+.+ +++|+++|++|... +...+++++++ |+++.+|... .....++...+.. +.++.++..+. ++.+++++++
T Consensus 219 ~~~-~~~d~vl~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l 291 (325)
T cd08264 219 EIT-KMADVVINSLGSSF-WDLSLSVLGRG-GRLVTFGTLT-GGEVKLDLSDLYSKQISIIGSTGGT---RKELLELVKI 291 (325)
T ss_pred HHh-CCCCEEEECCCHHH-HHHHHHhhccC-CEEEEEecCC-CCCCccCHHHHhhcCcEEEEccCCC---HHHHHHHHHH
Confidence 666 57999999999865 99999999997 9999998742 2224455555544 77777764332 3578888998
Q ss_pred HHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EE
Q 025257 214 YMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RC 249 (255)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~ 249 (255)
+.+.. + .+.++|+++++++|++.+.++... |+
T Consensus 292 ~~~~~--~--~~~~~~~~~~~~~a~~~~~~~~~~~kv 324 (325)
T cd08264 292 AKDLK--V--KVWKTFKLEEAKEALKELFSKERDGRI 324 (325)
T ss_pred HHcCC--c--eeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence 86433 2 255789999999999998876554 54
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo |
| >cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=183.13 Aligned_cols=243 Identities=16% Similarity=0.228 Sum_probs=178.9
Q ss_pred CCCCCC-ccccCCccccccc-----CccceeeEEEEcCC----ceEEcCCCCCcccccccccchhhhhhHHHhhc-CCCC
Q 025257 2 MNDRKS-RFSINGKPIYHFM-----GTSTFSQYTVVHDV----SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA-KVEP 70 (255)
Q Consensus 2 ~g~~~~-~~~~~g~~v~~~~-----~~g~~ae~~~v~~~----~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~-~~~~ 70 (255)
+|+++. +|++ ||+|+++. ..|+|++|++++.. .++++|+++++++++.++.++.|||+++.+.. ++++
T Consensus 73 vG~~v~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~ 151 (352)
T cd08247 73 VGSNVASEWKV-GDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGP 151 (352)
T ss_pred eCcccccCCCC-CCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCC
Confidence 356776 7888 99998764 25899999999987 78999999999999999999999999987766 7999
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCcEEeCCCCCCch---HHHH-HHhhcCC-CccE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP---IQQV-LVDLTDG-GVDY 143 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~---~~~~-i~~~~~~-~~d~ 143 (255)
|++|+|+|+ |.+|++++++|+..|.. .++++. ++++.+.++++|++.+++.++ .+ +... ++..+++ ++|+
T Consensus 152 g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~d~ 228 (352)
T cd08247 152 DSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDA--HSGVKLLKPVLENVKGQGKFDL 228 (352)
T ss_pred CCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCC--CcccchHHHHHHhhcCCCCceE
Confidence 999999998 79999999999988542 466665 566667888999988988765 44 4444 4444434 8999
Q ss_pred EEecCCcHHHHHHHHHHhc---cCCceEEEEccCCCCCcc--c--------cCchhhccCc-----EEEEeeeCCCCccC
Q 025257 144 SFECIGNVSVMRAALECCH---KGWGTSVIVGVAASGQEI--S--------TRPFQLVTGR-----VWKGTAFGGFKSRS 205 (255)
Q Consensus 144 v~d~~g~~~~~~~~~~~l~---~~~G~~v~~g~~~~~~~~--~--------~~~~~~~~~~-----~~~g~~~~~~~~~~ 205 (255)
++||+|+.......+++++ ++ |+++.++........ + .....+.+.. .+....... ..+
T Consensus 229 vl~~~g~~~~~~~~~~~l~~~~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 305 (352)
T cd08247 229 ILDCVGGYDLFPHINSILKPKSKN-GHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDP--NAD 305 (352)
T ss_pred EEECCCCHHHHHHHHHHhCccCCC-CEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecC--CHH
Confidence 9999999655889999999 96 999987532111000 0 1111111122 222111111 124
Q ss_pred cHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 206 QVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
.+.++++++.++.+.+ .+.++++++++++|++.+.+++.. |+++++
T Consensus 306 ~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 352 (352)
T cd08247 306 WIEKCAELIADGKVKP--PIDSVYPFEDYKEAFERLKSNRAKGKVVIKV 352 (352)
T ss_pred HHHHHHHHHhCCCeEe--eeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 5778889999998653 356789999999999999887766 988763
|
This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=179.95 Aligned_cols=241 Identities=25% Similarity=0.396 Sum_probs=195.8
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-Ch
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GT 81 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~ 81 (255)
|+++..++. |++|+++...|++++|+.++...++++|++++..+++.+..++.+|++++.....++++++|+|+|+ |+
T Consensus 73 g~~~~~~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~ 151 (323)
T cd08241 73 GEGVTGFKV-GDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGG 151 (323)
T ss_pred CCCCCCCCC-CCEEEEecCCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCch
Confidence 445566778 9999987546899999999999999999999999888888899999998877889999999999998 99
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHH
Q 025257 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 82 vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~ 160 (255)
+|++++++++..|+ +|+++++++++.+.++++|++.+++... .++.+.+.+.+.+ ++|++++++|+.. ....+++
T Consensus 152 ~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~~~~~~d~v~~~~g~~~-~~~~~~~ 227 (323)
T cd08241 152 VGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDYRD--PDLRERVKALTGGRGVDVVYDPVGGDV-FEASLRS 227 (323)
T ss_pred HHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeeecCC--ccHHHHHHHHcCCCCcEEEEECccHHH-HHHHHHh
Confidence 99999999999999 8999999999999999999988888776 7788888888777 8999999999865 8899999
Q ss_pred hccCCceEEEEccCCCCCccccCc-hhhccCcEEEEeeeCCCCc------cCcHHHHHHHHHcCCCCCCCcceeeeecch
Q 025257 161 CHKGWGTSVIVGVAASGQEISTRP-FQLVTGRVWKGTAFGGFKS------RSQVPWLVDKYMKKEIKVDEYVTHNMTLGE 233 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (255)
++++ |+++.+|....... .++. ..+.++.++.+.....+.. ...+.++++++.++.+.+ .....|++++
T Consensus 228 ~~~~-g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 303 (323)
T cd08241 228 LAWG-GRLLVIGFASGEIP-QIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRP--HVSAVFPLEQ 303 (323)
T ss_pred hccC-CEEEEEccCCCCcC-cCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCccc--ccceEEcHHH
Confidence 9996 99999987432111 1222 2233478888876544321 134567888888888643 3567899999
Q ss_pred HHHHHHHhhCCCee-EEEEe
Q 025257 234 INEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 234 ~~~a~~~~~~~~~~-k~vi~ 252 (255)
++++++.+..+... |++++
T Consensus 304 ~~~~~~~~~~~~~~~~vvv~ 323 (323)
T cd08241 304 AAEALRALADRKATGKVVLT 323 (323)
T ss_pred HHHHHHHHHhCCCCCcEEeC
Confidence 99999988776665 87763
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=182.76 Aligned_cols=238 Identities=24% Similarity=0.289 Sum_probs=182.5
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
.|+++..|++ ||+|++....|+|++|+.++...++++|+++++++++.++.++.+||+++.....+.++++|+|+|+ |
T Consensus 72 vG~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g 150 (331)
T cd08273 72 LGSGVTGFEV-GDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASG 150 (331)
T ss_pred eCCCCccCCC-CCEEEEeCCCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCc
Confidence 3567777888 9999987556999999999999999999999999999999999999999888789999999999997 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~ 160 (255)
++|++++++++..|+ +|+++++ +++.+.++++|+.. ++... .++.+. ...++++|+++||+++.. +...+++
T Consensus 151 ~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~~~--~~~~~~--~~~~~~~d~vl~~~~~~~-~~~~~~~ 222 (331)
T cd08273 151 GVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDYRT--KDWLPA--MLTPGGVDVVFDGVGGES-YEESYAA 222 (331)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcCCC--cchhhh--hccCCCceEEEECCchHH-HHHHHHH
Confidence 999999999999999 9999997 88888889999764 44443 444443 233348999999999988 8999999
Q ss_pred hccCCceEEEEccCCCCCccccC--ch-----------hhccCcEEEEeeeCCCC------ccCcHHHHHHHHHcCCCCC
Q 025257 161 CHKGWGTSVIVGVAASGQEISTR--PF-----------QLVTGRVWKGTAFGGFK------SRSQVPWLVDKYMKKEIKV 221 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~~~~--~~-----------~~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~ 221 (255)
++.+ |+++.+|........... +. .......+.+....... ..+.+.++++++.++.+.+
T Consensus 223 l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 301 (331)
T cd08273 223 LAPG-GTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRP 301 (331)
T ss_pred hcCC-CEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccC
Confidence 9996 999999875432221111 10 11112222222211111 1245778889999998653
Q ss_pred CCcceeeeecchHHHHHHHhhCCCee-EEEE
Q 025257 222 DEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 222 ~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi 251 (255)
.+.++|++++++++++.+.++... |+|+
T Consensus 302 --~~~~~~~~~~~~~a~~~~~~~~~~gkvv~ 330 (331)
T cd08273 302 --KIAKRLPLSEVAEAHRLLESGKVVGKIVL 330 (331)
T ss_pred --CcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence 356789999999999998877665 7775
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=186.02 Aligned_cols=240 Identities=21% Similarity=0.248 Sum_probs=180.9
Q ss_pred CCCCCCccccCCccccccc---CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCC----CCEE
Q 025257 2 MNDRKSRFSINGKPIYHFM---GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP----GSIV 74 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~---~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~----~~~v 74 (255)
.|.++..+++ ||+|+++. ..|+|++|+.++.+.++++|+++++++++.+++++.|||+++.+...+.+ +++|
T Consensus 88 vG~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~v 166 (350)
T cd08248 88 IGSGVKSFEI-GDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRV 166 (350)
T ss_pred cCCCcccCCC-CCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEE
Confidence 3556777888 99998754 36999999999999999999999999999999999999999877777754 9999
Q ss_pred EEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHH
Q 025257 75 AVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSV 153 (255)
Q Consensus 75 lI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~ 153 (255)
+|+|+ |++|++++++++.+|+ +|+++.++ ++.+.++++|++.+++..+ .++.+.+... +++|+++|++|.+.
T Consensus 167 lI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~--~~~~~~l~~~--~~vd~vi~~~g~~~- 239 (350)
T cd08248 167 LILGGSGGVGTFAIQLLKAWGA-HVTTTCST-DAIPLVKSLGADDVIDYNN--EDFEEELTER--GKFDVILDTVGGDT- 239 (350)
T ss_pred EEECCCChHHHHHHHHHHHCCC-eEEEEeCc-chHHHHHHhCCceEEECCC--hhHHHHHHhc--CCCCEEEECCChHH-
Confidence 99996 9999999999999999 88888754 6777889999988888765 5666655432 37999999999885
Q ss_pred HHHHHHHhccCCceEEEEccCCCCCc--cccCch------hhcc-CcE-EE-Ee---eeCCCCccCcHHHHHHHHHcCCC
Q 025257 154 MRAALECCHKGWGTSVIVGVAASGQE--ISTRPF------QLVT-GRV-WK-GT---AFGGFKSRSQVPWLVDKYMKKEI 219 (255)
Q Consensus 154 ~~~~~~~l~~~~G~~v~~g~~~~~~~--~~~~~~------~~~~-~~~-~~-g~---~~~~~~~~~~~~~~~~~~~~~~~ 219 (255)
....+++++++ |+++.+|....... ..+... .+.. ... +. +. +.........+.++++++.++.+
T Consensus 240 ~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 318 (350)
T cd08248 240 EKWALKLLKKG-GTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKI 318 (350)
T ss_pred HHHHHHHhccC-CEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCE
Confidence 99999999996 99999986431111 011000 0110 100 00 00 00001123468889999999986
Q ss_pred CCCCcceeeeecchHHHHHHHhhCCCee-EEEEe
Q 025257 220 KVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 252 (255)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~ 252 (255)
.+ .+.+.|+++++++|++.+.+++.. |++++
T Consensus 319 ~~--~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 350 (350)
T cd08248 319 KP--VIDKVFPFEEVPEAYEKVESGHARGKTVIK 350 (350)
T ss_pred ec--ccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence 43 356789999999999998877655 88763
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-25 Score=176.15 Aligned_cols=202 Identities=27% Similarity=0.375 Sum_probs=166.0
Q ss_pred CCCCCccccCCccccccc-----------------------CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhh
Q 025257 3 NDRKSRFSINGKPIYHFM-----------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGL 59 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~-----------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~ 59 (255)
|.++..|++ ||+|++.. ..|+|++|+.++...++++|+++++++++.++.++.|||
T Consensus 45 G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~ 123 (271)
T cd05188 45 GPGVTGVKV-GDRVVVLPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAY 123 (271)
T ss_pred CCCCCcCCC-CCEEEEcCCCCCCCCHHHHhhCCCCCEeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHH
Confidence 556777888 99998654 258999999999999999999999999999999999999
Q ss_pred hHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC
Q 025257 60 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 60 ~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
+++.....++++++|||+|+|++|++++++++..|. +|+++++++++.+.++++|++.+++..+ .+..+.+. .+.+
T Consensus 124 ~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~-~~~~ 199 (271)
T cd05188 124 HALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE--EDLEEELR-LTGG 199 (271)
T ss_pred HHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc--CCHHHHHH-HhcC
Confidence 998777777999999999986699999999999998 9999999999999999999988888776 66766666 4455
Q ss_pred -CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCccCcHHHHHHH
Q 025257 140 -GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDK 213 (255)
Q Consensus 140 -~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 213 (255)
++|+++++++........+++++++ |+++.+|..............+.++.++.++....+ .++++++++
T Consensus 200 ~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 270 (271)
T cd05188 200 GGADVVIDAVGGPETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTR---EDFEEALDL 270 (271)
T ss_pred CCCCEEEECCCCHHHHHHHHHhcccC-CEEEEEccCCCCCCcccHHHHHhcceEEEEeecCCH---HHHHHHHhh
Confidence 8999999999844489999999996 999999886543322222333445889988875543 466666655
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=179.19 Aligned_cols=238 Identities=19% Similarity=0.300 Sum_probs=187.1
Q ss_pred CCCCCccccCCccccccc---CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC
Q 025257 3 NDRKSRFSINGKPIYHFM---GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL 79 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~ 79 (255)
|+++..+++ ||+|+++. ..|+|++|+.++...++++|++++..+++.+++++.+|++++.+...++++++++|+|+
T Consensus 72 G~~~~~~~~-Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~ 150 (325)
T cd08271 72 GAKVTGWKV-GDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGG 150 (325)
T ss_pred CCCCCcCCC-CCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 556667788 99998764 36899999999999999999999999999999999999999888889999999999998
Q ss_pred -ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHH
Q 025257 80 -GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAA 157 (255)
Q Consensus 80 -g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~ 157 (255)
|++|++++++++..|+ +|+++. ++++.+.++++|++.+++... ..+.+.+.+.+.+ ++|++++++++.. ....
T Consensus 151 ~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~ 225 (325)
T cd08271 151 AGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDYND--EDVCERIKEITGGRGVDAVLDTVGGET-AAAL 225 (325)
T ss_pred ccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecCCC--ccHHHHHHHHcCCCCCcEEEECCCcHh-HHHH
Confidence 8999999999999999 888877 677888888899988888776 6777888887776 8999999999877 6778
Q ss_pred HHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCC----------CccCcHHHHHHHHHcCCCCCCCccee
Q 025257 158 LECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF----------KSRSQVPWLVDKYMKKEIKVDEYVTH 227 (255)
Q Consensus 158 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (255)
+++++++ |+++.++..... . . ...+..+..+....+... ...+.+.+++++++++.+.+. ..+
T Consensus 226 ~~~l~~~-G~~v~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~ 298 (325)
T cd08271 226 APTLAFN-GHLVCIQGRPDA-S-P--DPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPL--VIE 298 (325)
T ss_pred HHhhccC-CEEEEEcCCCCC-c-c--hhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeec--cce
Confidence 9999996 999999754321 1 1 111112333332222111 011235678888888886543 447
Q ss_pred eeecchHHHHHHHhhCCCee-EEEEec
Q 025257 228 NMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
.|+++++.++++.+.++... |+++++
T Consensus 299 ~~~~~~~~~a~~~~~~~~~~~kiv~~~ 325 (325)
T cd08271 299 VLPFEQLPEALRALKDRHTRGKIVVTI 325 (325)
T ss_pred EEcHHHHHHHHHHHHcCCccceEEEEC
Confidence 89999999999999877766 888763
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=178.34 Aligned_cols=237 Identities=22% Similarity=0.302 Sum_probs=180.0
Q ss_pred CCCCCCccccCCcccccccC---ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEc
Q 025257 2 MNDRKSRFSINGKPIYHFMG---TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 78 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~---~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G 78 (255)
.|+++..+++ ||+|+++.. .|+|++|+.++.+.++++|++++.++++.+++++.+||+++.+..+++++++|+|+|
T Consensus 73 ~G~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g 151 (319)
T cd08267 73 VGSGVTRFKV-GDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLING 151 (319)
T ss_pred eCCCCCCCCC-CCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEc
Confidence 3567778888 999987653 589999999999999999999999999999999999999987777899999999999
Q ss_pred C-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHH-HHH
Q 025257 79 L-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVS-VMR 155 (255)
Q Consensus 79 ~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~-~~~ 155 (255)
+ |++|++++++++..|+ +|++++++ ++.+.++++|++.+++... .++. ...+.+ ++|++++|+++.. ...
T Consensus 152 ~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~--~~~~---~~~~~~~~~d~vi~~~~~~~~~~~ 224 (319)
T cd08267 152 ASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT--EDFV---ALTAGGEKYDVIFDAVGNSPFSLY 224 (319)
T ss_pred CCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC--CCcc---hhccCCCCCcEEEECCCchHHHHH
Confidence 7 9999999999999999 99998865 8888889999988887765 4443 334445 8999999998532 234
Q ss_pred HHHHHhccCCceEEEEccCCCCCcccc---CchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 156 AALECCHKGWGTSVIVGVAASGQEIST---RPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 156 ~~~~~l~~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
..+..++++ |+++.+|.......... ..........+....... ..+.+.++++++.++.+.+ .+.++|+++
T Consensus 225 ~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~--~~~~~~~~~ 299 (319)
T cd08267 225 RASLALKPG-GRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKP--NAEDLEQLAELVEEGKLKP--VIDSVYPLE 299 (319)
T ss_pred HhhhccCCC-CEEEEeccccccccccccccchhhccccceEEEEEecC--CHHHHHHHHHHHHCCCeee--eeeeEEcHH
Confidence 444458996 99999987543222111 111122223333222211 2467888999999988643 356789999
Q ss_pred hHHHHHHHhhCCCee-EEEE
Q 025257 233 EINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 233 ~~~~a~~~~~~~~~~-k~vi 251 (255)
++++|++.+.++... |+++
T Consensus 300 ~i~~a~~~~~~~~~~~~vvv 319 (319)
T cd08267 300 DAPEAYRRLKSGRARGKVVI 319 (319)
T ss_pred HHHHHHHHHhcCCCCCcEeC
Confidence 999999999876655 7663
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=177.02 Aligned_cols=242 Identities=19% Similarity=0.295 Sum_probs=189.4
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-Ch
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GT 81 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~ 81 (255)
|.++.+++. |++|+++...|+|++|+.++...++++|+.+++++++.+++++.+||+++.....++++++|+|+|+ |+
T Consensus 72 g~~~~~~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~ 150 (337)
T cd08275 72 GEGVKDFKV-GDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGG 150 (337)
T ss_pred CCCCcCCCC-CCEEEEecCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcch
Confidence 556677888 9999987666999999999999999999999999999999999999999888899999999999997 99
Q ss_pred HHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHH
Q 025257 82 VGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 82 vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~ 160 (255)
+|++++++++.. +. .++.. ..+++.+.++++|++.+++... .++.+.++..+++++|+++||+|+.. ....+++
T Consensus 151 ~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~d~v~~~~g~~~-~~~~~~~ 225 (337)
T cd08275 151 VGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVTHVIDYRT--QDYVEEVKKISPEGVDIVLDALGGED-TRKSYDL 225 (337)
T ss_pred HHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCcEEeeCCC--CcHHHHHHHHhCCCceEEEECCcHHH-HHHHHHh
Confidence 999999999998 33 33322 2345788888899988888876 77888888777558999999999876 8899999
Q ss_pred hccCCceEEEEccCCCCCcccc---------------Cchh-hccCcEEEEeeeCCCCc-----cCcHHHHHHHHHcCCC
Q 025257 161 CHKGWGTSVIVGVAASGQEIST---------------RPFQ-LVTGRVWKGTAFGGFKS-----RSQVPWLVDKYMKKEI 219 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~~~---------------~~~~-~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~ 219 (255)
++++ |+++.+|.......... .... +.++.++.++....... ...+.++++++.++.+
T Consensus 226 l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (337)
T cd08275 226 LKPM-GRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKI 304 (337)
T ss_pred hccC-cEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCC
Confidence 9996 99999987532111111 1112 33488888776542211 1235678888888886
Q ss_pred CCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 220 KVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
.+. ....|++++++++++.+.++... |+++++
T Consensus 305 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 337 (337)
T cd08275 305 KPK--IDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337 (337)
T ss_pred CCc--eeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 543 45789999999999999877666 988864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-24 Score=173.22 Aligned_cols=229 Identities=19% Similarity=0.257 Sum_probs=182.9
Q ss_pred CCCCCccccCCccccccc---CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC
Q 025257 3 NDRKSRFSINGKPIYHFM---GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL 79 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~ 79 (255)
|+++..+++ |++|+++. ..|+|++|+.++...++++|+++++.+++.+++.+.+|++++.+...+.++++|+|+|+
T Consensus 75 G~~~~~~~~-G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~ 153 (309)
T cd05289 75 GPGVTGFKV-GDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGA 153 (309)
T ss_pred CCCCCCCCC-CCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecC
Confidence 455667788 99998764 25899999999999999999999999999999999999999877777999999999997
Q ss_pred -ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHH
Q 025257 80 -GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAA 157 (255)
Q Consensus 80 -g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~ 157 (255)
|.+|++++++++..|+ +|+++++++ +.+.++++|++.+++... .++.+ .+.+ ++|+++|++++.. ....
T Consensus 154 ~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~~~~~~--~~~~~----~~~~~~~d~v~~~~~~~~-~~~~ 224 (309)
T cd05289 154 AGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEVIDYTK--GDFER----AAAPGGVDAVLDTVGGET-LARS 224 (309)
T ss_pred CchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEEEeCCC--Cchhh----ccCCCCceEEEECCchHH-HHHH
Confidence 9999999999999999 899988777 888888899888887665 44443 3334 8999999999886 8999
Q ss_pred HHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHH
Q 025257 158 LECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEA 237 (255)
Q Consensus 158 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 237 (255)
+++++++ |+++.+|..... .. ..+.++.++....+... .+.+.+++++++++.+.+ .+.++|++++++++
T Consensus 225 ~~~l~~~-g~~v~~g~~~~~--~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a 294 (309)
T cd05289 225 LALVKPG-GRLVSIAGPPPA--EQ---AAKRRGVRAGFVFVEPD--GEQLAELAELVEAGKLRP--VVDRVFPLEDAAEA 294 (309)
T ss_pred HHHHhcC-cEEEEEcCCCcc--hh---hhhhccceEEEEEeccc--HHHHHHHHHHHHCCCEEE--eeccEEcHHHHHHH
Confidence 9999996 999999875321 11 22233556655544322 357888999999988543 35678999999999
Q ss_pred HHHhhCCCee-EEEE
Q 025257 238 FRYMHGGDCL-RCVL 251 (255)
Q Consensus 238 ~~~~~~~~~~-k~vi 251 (255)
++.+..+... |+++
T Consensus 295 ~~~~~~~~~~~kvv~ 309 (309)
T cd05289 295 HERLESGHARGKVVL 309 (309)
T ss_pred HHHHHhCCCCCcEeC
Confidence 9998876655 7663
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-20 Score=132.94 Aligned_cols=127 Identities=29% Similarity=0.445 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALE 159 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~ 159 (255)
++|++++|+|+..|+ +|+++++++++++.++++|+++++++++ .++.+.+++.+++ ++|+||||+|.+..++..++
T Consensus 1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~--~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~ 77 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD--DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIK 77 (130)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT--SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc--cccccccccccccccceEEEEecCcHHHHHHHHH
Confidence 589999999999997 9999999999999999999999999998 8899999999998 99999999997777999999
Q ss_pred HhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHH
Q 025257 160 CCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYM 215 (255)
Q Consensus 160 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 215 (255)
+++++ |+++.+|... ....+++...++. +.++.|+..++ .++++++++++.
T Consensus 78 ~l~~~-G~~v~vg~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~la 129 (130)
T PF00107_consen 78 LLRPG-GRIVVVGVYG-GDPISFNLMNLMFKEITIRGSWGGS---PEDFQEALQLLA 129 (130)
T ss_dssp HEEEE-EEEEEESSTS-TSEEEEEHHHHHHTTEEEEEESSGG---HHHHHHHHHHHH
T ss_pred HhccC-CEEEEEEccC-CCCCCCCHHHHHhCCcEEEEEccCC---HHHHHHHHHHhc
Confidence 99997 9999999975 4566777777766 99999998664 367888888775
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=119.95 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=135.0
Q ss_pred hhhHHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhh
Q 025257 58 GLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 58 a~~~l~~~~~-~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~ 136 (255)
.+.++.+... ..+|++|+|.|+|++|+.+++.++..|+ +|++++.++.+.+.+++.|++.+ + ..+.+
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~-------~~e~v--- 255 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-T-------MEEAV--- 255 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-c-------HHHHH---
Confidence 3445555544 3689999999999999999999999999 99999999999999999998533 1 11222
Q ss_pred cCCCccEEEecCCcHHHHHHH-HHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHH--HHHH
Q 025257 137 TDGGVDYSFECIGNVSVMRAA-LECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVP--WLVD 212 (255)
Q Consensus 137 ~~~~~d~v~d~~g~~~~~~~~-~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--~~~~ 212 (255)
.++|+|++|+|.+..+... ++.++++ |+++.+|.. ...++...+.. ++++.++..... ...++ ..++
T Consensus 256 --~~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~----~~eId~~~L~~~el~i~g~~~~~~--~~~~~~g~aI~ 326 (413)
T cd00401 256 --KEGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF----DVEIDVKGLKENAVEVVNIKPQVD--RYELPDGRRII 326 (413)
T ss_pred --cCCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC----CCccCHHHHHhhccEEEEccCCcc--eEEcCCcchhh
Confidence 1589999999998877765 9999997 999999863 33566666655 888887754321 12445 6899
Q ss_pred HHHcCCC-CCCCcceee-----eecc-hHHHHHHHhhCCCe--eEEEEecC
Q 025257 213 KYMKKEI-KVDEYVTHN-----MTLG-EINEAFRYMHGGDC--LRCVLKMQ 254 (255)
Q Consensus 213 ~~~~~~~-~~~~~~~~~-----~~~~-~~~~a~~~~~~~~~--~k~vi~~~ 254 (255)
++.+|++ ++...+.+. ++|+ |+.++++.+.++.. .|+++.+.
T Consensus 327 LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~ 377 (413)
T cd00401 327 LLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK 377 (413)
T ss_pred hhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence 9999998 777777777 8899 99999998877653 38877653
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.3e-13 Score=113.37 Aligned_cols=154 Identities=17% Similarity=0.196 Sum_probs=111.4
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCC-----------chHHHHHHh
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHD-----------KPIQQVLVD 135 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~-----------~~~~~~i~~ 135 (255)
..++++|+|+|+|++|+++++.|+.+|+ +|++++.++++++.++++|++.+ +|..+.+ .++.+..++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 4589999999999999999999999999 99999999999999999999854 6654310 133333333
Q ss_pred h-cC--CCccEEEecCCc-----HHH-HHHHHHHhccCCceEEEEccCCCCC-ccccCchhhc--cCcEEEEeeeCCCCc
Q 025257 136 L-TD--GGVDYSFECIGN-----VSV-MRAALECCHKGWGTSVIVGVAASGQ-EISTRPFQLV--TGRVWKGTAFGGFKS 203 (255)
Q Consensus 136 ~-~~--~~~d~v~d~~g~-----~~~-~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~--~~~~~~g~~~~~~~~ 203 (255)
. ++ +++|++|+|++. +.. .++.++.++++ |+++.+|...++. ..+.+...++ +++++.|.+- +.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n--~P- 316 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTD--LP- 316 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeCC--Cc-
Confidence 2 33 269999999996 334 39999999997 9999999853322 2344434443 4888888752 22
Q ss_pred cCcHHHHHHHHHcCCCCCCCcce
Q 025257 204 RSQVPWLVDKYMKKEIKVDEYVT 226 (255)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~ 226 (255)
.+....+.+++.++.+++.+.+.
T Consensus 317 ~~~p~~As~lla~~~i~l~~lIt 339 (509)
T PRK09424 317 SRLPTQSSQLYGTNLVNLLKLLC 339 (509)
T ss_pred hhHHHHHHHHHHhCCccHHHHhc
Confidence 23344688888888876554443
|
|
| >PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-14 Score=100.69 Aligned_cols=120 Identities=22% Similarity=0.298 Sum_probs=77.0
Q ss_pred cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC--cHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCc
Q 025257 114 FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG--NVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 191 (255)
Q Consensus 114 ~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g--~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~ 191 (255)
+|+++++|+++ +++ ...+++|+|||++| .+..+..+++++ ++ |+++.++. ....+.. .....
T Consensus 1 LGAd~vidy~~--~~~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~----~~~~~~~--~~~~~ 64 (127)
T PF13602_consen 1 LGADEVIDYRD--TDF------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG----DLPSFAR--RLKGR 64 (127)
T ss_dssp CT-SEEEETTC--SHH------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S----HHHHHHH--HHHCH
T ss_pred CCcCEEecCCC--ccc------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC----cccchhh--hhccc
Confidence 68999999987 766 21238999999999 666347777888 96 99999974 0001111 11122
Q ss_pred EEEEeeeCCCC----ccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEE
Q 025257 192 VWKGTAFGGFK----SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251 (255)
Q Consensus 192 ~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi 251 (255)
.+....+.... ..+.++++.+++++|++++ .+.++||++++++|++.+++++.. |+||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~--~i~~~f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 65 SIRYSFLFSVDPNAIRAEALEELAELVAEGKLKP--PIDRVFPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp HCEEECCC-H--HHHHHHHHHHHHHHHHTTSS-----EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred ceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEE--eeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence 23333322111 2245899999999999655 478899999999999999999877 9986
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.8e-09 Score=83.08 Aligned_cols=163 Identities=20% Similarity=0.278 Sum_probs=100.5
Q ss_pred hcCCCCCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhc----CCcEEeCCCCCCchHHHHHHhhcCC
Q 025257 65 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNF----GVTEFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 65 ~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
...++++++||.+|+|+ |..+.++++..|.. +|++++.+++..+.+++. +...+- ... .++ +.+ .+.++
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~-~~~--~d~-~~l-~~~~~ 145 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVE-FRL--GEI-EAL-PVADN 145 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEE-EEE--cch-hhC-CCCCC
Confidence 45688999999999987 88888888887753 699999999988888653 332221 111 222 111 12233
Q ss_pred CccEEEecC------CcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCccCcHHHHHHH
Q 025257 140 GVDYSFECI------GNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDK 213 (255)
Q Consensus 140 ~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 213 (255)
.||+|+... ..+..++.+.+.|+++ |+++..+..... . ++ ..+.....+.+...... ....++.++
T Consensus 146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~~~-~--~~-~~~~~~~~~~~~~~~~~---~~~~e~~~~ 217 (272)
T PRK11873 146 SVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVLRG-E--LP-EEIRNDAELYAGCVAGA---LQEEEYLAM 217 (272)
T ss_pred ceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeeccC-C--CC-HHHHHhHHHHhccccCC---CCHHHHHHH
Confidence 799998543 3345689999999997 999987764322 1 11 11112222222211211 245666677
Q ss_pred HHc-CCCCCCCcceeeeecchHHHHHHHh
Q 025257 214 YMK-KEIKVDEYVTHNMTLGEINEAFRYM 241 (255)
Q Consensus 214 ~~~-~~~~~~~~~~~~~~~~~~~~a~~~~ 241 (255)
+++ |...........++++++.++++.+
T Consensus 218 l~~aGf~~v~i~~~~~~~l~~~~~~~~~~ 246 (272)
T PRK11873 218 LAEAGFVDITIQPKREYRIPDAREFLEDW 246 (272)
T ss_pred HHHCCCCceEEEeccceecccHHHHHHHh
Confidence 765 4333333334568899999999988
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.6e-08 Score=84.44 Aligned_cols=106 Identities=21% Similarity=0.320 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCC-----------CchHHHHHHhh
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDH-----------DKPIQQVLVDL 136 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~-----------~~~~~~~i~~~ 136 (255)
.++++|+|+|+|.+|+++++.++.+|+ +|+++++++++.+.++++|++.+ ++..+. .+++.+...+.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 367899999999999999999999999 89999999999999999998763 332110 02333333333
Q ss_pred cC--C-CccEEEecC---CcHH---HHHHHHHHhccCCceEEEEccCCC
Q 025257 137 TD--G-GVDYSFECI---GNVS---VMRAALECCHKGWGTSVIVGVAAS 176 (255)
Q Consensus 137 ~~--~-~~d~v~d~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~ 176 (255)
.. . ++|++|+|+ |.+. ..++.++.++++ +.++.++...+
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~G 288 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQG 288 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCC
Confidence 32 2 799999999 5433 468889999997 99999976544
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.3e-07 Score=76.51 Aligned_cols=104 Identities=25% Similarity=0.315 Sum_probs=80.0
Q ss_pred hhhhHHHhhcCCC-CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHh
Q 025257 57 TGLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 57 ta~~~l~~~~~~~-~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
.+|.++.+...+. .|++|+|.|.|.+|..+++.++.+|+ +|+++++++.+...+...|+. +. ++.+.+.
T Consensus 197 s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~-------~l~eal~- 266 (425)
T PRK05476 197 SLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VM-------TMEEAAE- 266 (425)
T ss_pred hhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ec-------CHHHHHh-
Confidence 3455554543544 89999999999999999999999999 999999988887766666764 22 1222222
Q ss_pred hcCCCccEEEecCCcHHHHH-HHHHHhccCCceEEEEccCC
Q 025257 136 LTDGGVDYSFECIGNVSVMR-AALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~ 175 (255)
++|++++++|....+. ..+..++++ +.++..|...
T Consensus 267 ----~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~d 302 (425)
T PRK05476 267 ----LGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHFD 302 (425)
T ss_pred ----CCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCCC
Confidence 5899999999887675 688889996 8999888754
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-06 Score=71.92 Aligned_cols=95 Identities=21% Similarity=0.302 Sum_probs=75.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+++|+|+|.|.+|+.+++.++.+|+ +|+++++++++.+.++++|++.+ .. .++.+.+. .+|+||+|+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~----~~l~~~l~-----~aDiVI~t~p 219 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL----SELAEEVG-----KIDIIFNTIP 219 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH----HHHHHHhC-----CCCEEEECCC
Confidence 68999999999999999999999999 99999999988888888887533 11 22322222 5999999987
Q ss_pred cHHHHHHHHHHhccCCceEEEEccCCC
Q 025257 150 NVSVMRAALECCHKGWGTSVIVGVAAS 176 (255)
Q Consensus 150 ~~~~~~~~~~~l~~~~G~~v~~g~~~~ 176 (255)
.....+..++.++++ +.++.++...+
T Consensus 220 ~~~i~~~~l~~~~~g-~vIIDla~~pg 245 (296)
T PRK08306 220 ALVLTKEVLSKMPPE-ALIIDLASKPG 245 (296)
T ss_pred hhhhhHHHHHcCCCC-cEEEEEccCCC
Confidence 665456778889996 99999977543
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1e-06 Score=74.32 Aligned_cols=101 Identities=25% Similarity=0.342 Sum_probs=78.0
Q ss_pred hhHHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhc
Q 025257 59 LGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 59 ~~~l~~~~~-~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
+.++.+... ...|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.+...++..|+. +.+ ..+.++
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~-------leeal~--- 249 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT-------MEEAAK--- 249 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC-------HHHHHh---
Confidence 344444434 4689999999999999999999999999 999999888877777777763 221 222222
Q ss_pred CCCccEEEecCCcHHHHHH-HHHHhccCCceEEEEccC
Q 025257 138 DGGVDYSFECIGNVSVMRA-ALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~~~~~-~~~~l~~~~G~~v~~g~~ 174 (255)
+.|++++++|.+..+.. .+..++++ +.++.+|..
T Consensus 250 --~aDVVItaTG~~~vI~~~~~~~mK~G-ailiN~G~~ 284 (406)
T TIGR00936 250 --IGDIFITATGNKDVIRGEHFENMKDG-AIVANIGHF 284 (406)
T ss_pred --cCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEECCC
Confidence 57999999999887764 88889996 899988875
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-06 Score=72.79 Aligned_cols=101 Identities=26% Similarity=0.325 Sum_probs=79.8
Q ss_pred hhHHHhhcCC-CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhc
Q 025257 59 LGAVWNTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 59 ~~~l~~~~~~-~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
+.++.+...+ ..|++|+|.|.|.+|+.+++.++.+|+ +|+++++++.+...+...|+..+ ++.+.+.
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~vv--------~leEal~--- 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQVL--------TLEDVVS--- 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCeec--------cHHHHHh---
Confidence 4445555444 679999999999999999999999999 99999998887777777776521 1222332
Q ss_pred CCCccEEEecCCcHHH-HHHHHHHhccCCceEEEEccC
Q 025257 138 DGGVDYSFECIGNVSV-MRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~ 174 (255)
..|+++++.|.... ....+..++++ +.++.+|..
T Consensus 309 --~ADVVI~tTGt~~vI~~e~L~~MK~G-AiLiNvGr~ 343 (477)
T PLN02494 309 --EADIFVTTTGNKDIIMVDHMRKMKNN-AIVCNIGHF 343 (477)
T ss_pred --hCCEEEECCCCccchHHHHHhcCCCC-CEEEEcCCC
Confidence 48999999998874 38899999997 999999874
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.3e-07 Score=73.12 Aligned_cols=108 Identities=20% Similarity=0.210 Sum_probs=79.7
Q ss_pred CceEEcCCCCCcccccccccchhhhhhHHHhhcCC----CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchH-
Q 025257 34 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKV----EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF- 108 (255)
Q Consensus 34 ~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~----~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~- 108 (255)
..++++|+.++.+.++... +.++++.++ +.+.. .++.+|+|.|+|.+|..+++.++..|+.+|+++.+++++.
T Consensus 139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av-~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~ 216 (311)
T cd05213 139 QKAIKVGKRVRTETGISRG-AVSISSAAV-ELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE 216 (311)
T ss_pred HHHHHHHHHHhhhcCCCCC-CcCHHHHHH-HHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 4567889989888877765 677777765 33332 4789999999999999999999988876899999988775
Q ss_pred HHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHH
Q 025257 109 DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSV 153 (255)
Q Consensus 109 ~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~ 153 (255)
++++++|.. +++. .++.+.+. .+|+||.|++.+..
T Consensus 217 ~la~~~g~~-~~~~----~~~~~~l~-----~aDvVi~at~~~~~ 251 (311)
T cd05213 217 ELAKELGGN-AVPL----DELLELLN-----EADVVISATGAPHY 251 (311)
T ss_pred HHHHHcCCe-EEeH----HHHHHHHh-----cCCEEEECCCCCch
Confidence 556778873 3322 22333332 48999999998773
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.5e-06 Score=74.38 Aligned_cols=138 Identities=24% Similarity=0.316 Sum_probs=88.0
Q ss_pred cceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE
Q 025257 23 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 23 g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
-++++|..+++..++.+ +..+.+++..-.. ...+..+++++||+|+ |++|..+++.+...|+ +|+++
T Consensus 385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~ 452 (681)
T PRK08324 385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLA 452 (681)
T ss_pred hhcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEE
Confidence 46678888887777777 5566666542110 0122346789999997 9999999999999999 99999
Q ss_pred cCCcchHHHHH-hcCC----c-EEeCCCCCCchHHHHHHhhc--CCCccEEEecCCc-----------------------
Q 025257 102 DIDPKKFDRAK-NFGV----T-EFVNPKDHDKPIQQVLVDLT--DGGVDYSFECIGN----------------------- 150 (255)
Q Consensus 102 ~~~~~~~~~~~-~~g~----~-~vi~~~~~~~~~~~~i~~~~--~~~~d~v~d~~g~----------------------- 150 (255)
++++++.+.+. +++. . ...|..+ +..+.+.+.+.. .+++|+++++.|.
T Consensus 453 ~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd-~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~ 531 (681)
T PRK08324 453 DLDEEAAEAAAAELGGPDRALGVACDVTD-EAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNAT 531 (681)
T ss_pred eCCHHHHHHHHHHHhccCcEEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhH
Confidence 99887766553 3432 1 1234333 122333333321 2379999999982
Q ss_pred --HHHHHHHHHHhcc---CCceEEEEccC
Q 025257 151 --VSVMRAALECCHK---GWGTSVIVGVA 174 (255)
Q Consensus 151 --~~~~~~~~~~l~~---~~G~~v~~g~~ 174 (255)
...++.+++.++. + |+++.++..
T Consensus 532 g~~~l~~~~~~~l~~~~~~-g~iV~vsS~ 559 (681)
T PRK08324 532 GHFLVAREAVRIMKAQGLG-GSIVFIASK 559 (681)
T ss_pred HHHHHHHHHHHHHHhcCCC-cEEEEECCc
Confidence 1123444555555 4 789998774
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-05 Score=68.21 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=76.3
Q ss_pred hHHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcC
Q 025257 60 GAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 60 ~~l~~~~~-~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~ 138 (255)
.++.+... .-.|++|+|.|.|.+|..+++.++..|+ +|+++++++.+...+...|+.. .++.+.++
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~--------~~leell~---- 308 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQV--------VTLEDVVE---- 308 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCcee--------ccHHHHHh----
Confidence 44444433 4578999999999999999999999999 9999988877765555556542 12323332
Q ss_pred CCccEEEecCCcHHHH-HHHHHHhccCCceEEEEccC
Q 025257 139 GGVDYSFECIGNVSVM-RAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 139 ~~~d~v~d~~g~~~~~-~~~~~~l~~~~G~~v~~g~~ 174 (255)
..|+|+.++|....+ ...+..++++ +.++.+|-.
T Consensus 309 -~ADIVI~atGt~~iI~~e~~~~MKpG-AiLINvGr~ 343 (476)
T PTZ00075 309 -TADIFVTATGNKDIITLEHMRRMKNN-AIVGNIGHF 343 (476)
T ss_pred -cCCEEEECCCcccccCHHHHhccCCC-cEEEEcCCC
Confidence 589999999987766 4899999997 999999875
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-05 Score=63.84 Aligned_cols=110 Identities=22% Similarity=0.317 Sum_probs=77.0
Q ss_pred chhhhhhHHHhhc---CC-CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchH
Q 025257 54 GVPTGLGAVWNTA---KV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPI 129 (255)
Q Consensus 54 ~~~ta~~~l~~~~---~~-~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~ 129 (255)
+..+|.+++.... .+ -.+++++|.|.|.+|.++++.++..|+ +|++..+++++.+.+.+.|...+ .. .++
T Consensus 130 ~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~~-~~----~~l 203 (287)
T TIGR02853 130 SIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIPF-PL----NKL 203 (287)
T ss_pred cHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeee-cH----HHH
Confidence 4556655542222 11 257899999999999999999999999 99999999888777777775422 11 223
Q ss_pred HHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCC
Q 025257 130 QQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 130 ~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
.+.+. .+|+|++++.....-...+..++++ ..++.++...
T Consensus 204 ~~~l~-----~aDiVint~P~~ii~~~~l~~~k~~-aliIDlas~P 243 (287)
T TIGR02853 204 EEKVA-----EIDIVINTIPALVLTADVLSKLPKH-AVIIDLASKP 243 (287)
T ss_pred HHHhc-----cCCEEEECCChHHhCHHHHhcCCCC-eEEEEeCcCC
Confidence 22222 5899999987654235667778886 8888887643
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-05 Score=67.16 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=69.1
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+.+|+|.|+|.+|+.+++.++.+|+ +|+++++++++.+.+. .++........+ +.++.+.+. .+|++++|++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~-~~~l~~~l~-----~aDvVI~a~~ 239 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN-AYEIEDAVK-----RADLLIGAVL 239 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC-HHHHHHHHc-----cCCEEEEccc
Confidence 4569999999999999999999999 8999999988877774 455432222221 123333332 5899999973
Q ss_pred ---c--HH-HHHHHHHHhccCCceEEEEccCC
Q 025257 150 ---N--VS-VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 150 ---~--~~-~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
. +. ..+..++.++++ +.++.++...
T Consensus 240 ~~g~~~p~lit~~~l~~mk~g-~vIvDva~d~ 270 (370)
T TIGR00518 240 IPGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQ 270 (370)
T ss_pred cCCCCCCcCcCHHHHhcCCCC-CEEEEEecCC
Confidence 2 21 136777889997 9999987654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=61.50 Aligned_cols=116 Identities=20% Similarity=0.201 Sum_probs=80.9
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcch----HHHHHhcCCcE
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK----FDRAKNFGVTE 118 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~----~~~~~~~g~~~ 118 (255)
++....-.++-+...|. |.+...++++++||-+|+|+ |..++-+++..| +|+.+.+.++= ++.++.+|...
T Consensus 47 lpi~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 47 LPIGCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN 121 (209)
T ss_pred ccCCCCceecCcHHHHH--HHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence 33334444444555554 55888999999999999975 889999999887 89999988773 33346678654
Q ss_pred Ee-CCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 119 FV-NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 119 vi-~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
|. ...| --.-+... +||.|+-+.+.+..-+..++.|+++ |+++..
T Consensus 122 V~v~~gD-------G~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~P 168 (209)
T COG2518 122 VTVRHGD-------GSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIP 168 (209)
T ss_pred eEEEECC-------cccCCCCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEE
Confidence 32 2222 11222333 8999998888777457889999997 887655
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=63.30 Aligned_cols=141 Identities=22% Similarity=0.284 Sum_probs=87.5
Q ss_pred cccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHH
Q 025257 9 FSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAE 88 (255)
Q Consensus 9 ~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~ 88 (255)
+.+ |++++.. .+|.+|.. +...++++++++++..+. .+.+.. ....+. ..+.++++||..|+|. |..++.
T Consensus 67 ~~~-g~~~~i~---p~~~~~~~-~~~~~i~i~p~~afgtg~-h~tt~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~ 136 (250)
T PRK00517 67 IRI-GDRLWIV---PSWEDPPD-PDEINIELDPGMAFGTGT-HPTTRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIA 136 (250)
T ss_pred EEE-cCCEEEE---CCCcCCCC-CCeEEEEECCCCccCCCC-CHHHHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHH
Confidence 444 5544432 35666644 667788898888877654 221111 111121 1256889999999987 877776
Q ss_pred HHHHcCCCeEEEEcCCcchHHHHHhc----CCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHH---HHHHHHHH
Q 025257 89 GAKAAGASRVIGIDIDPKKFDRAKNF----GVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVS---VMRAALEC 160 (255)
Q Consensus 89 l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~---~~~~~~~~ 160 (255)
++ ..|+.+|++++.++...+.+++. +....+... .+. .||+|+-+..... .++.+.+.
T Consensus 137 ~~-~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~-------------~~~~~fD~Vvani~~~~~~~l~~~~~~~ 202 (250)
T PRK00517 137 AA-KLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLP-------------QGDLKADVIVANILANPLLELAPDLARL 202 (250)
T ss_pred HH-HcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEc-------------cCCCCcCEEEEcCcHHHHHHHHHHHHHh
Confidence 54 46775699999999888877542 221101100 011 5999986555432 35678888
Q ss_pred hccCCceEEEEccC
Q 025257 161 CHKGWGTSVIVGVA 174 (255)
Q Consensus 161 l~~~~G~~v~~g~~ 174 (255)
|+++ |+++..|..
T Consensus 203 Lkpg-G~lilsgi~ 215 (250)
T PRK00517 203 LKPG-GRLILSGIL 215 (250)
T ss_pred cCCC-cEEEEEECc
Confidence 9997 999987664
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.5e-06 Score=74.52 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=59.3
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC---------------------cchHHHHHhcCCcEEeCCCCC
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---------------------PKKFDRAKNFGVTEFVNPKDH 125 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~---------------------~~~~~~~~~~g~~~vi~~~~~ 125 (255)
.+++|++|+|.|+|+.|+++++.++..|+ +|++++.. ..+.+.++++|++..++....
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 46789999999999999999999999999 89999843 245566788998877764320
Q ss_pred CchH-HHHHHhhcCCCccEEEecCCcHH
Q 025257 126 DKPI-QQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 126 ~~~~-~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
.+. .+.+. .++|+||+++|...
T Consensus 212 -~~~~~~~~~----~~~D~Vi~AtG~~~ 234 (564)
T PRK12771 212 -EDITLEQLE----GEFDAVFVAIGAQL 234 (564)
T ss_pred -CcCCHHHHH----hhCCEEEEeeCCCC
Confidence 111 11221 26999999999754
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.6e-06 Score=70.01 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=69.6
Q ss_pred EEcCCCCCcccccccccchhhhhhHHHhhcC---CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHH
Q 025257 37 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK---VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RAK 112 (255)
Q Consensus 37 ~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~---~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~ 112 (255)
+++|..+..+.+ ....+.+.+++++..... -.++.+|+|.|+|.+|.++++.++..|+.+|+++.+++++.+ +++
T Consensus 146 ~~~~k~v~~~t~-i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~ 224 (423)
T PRK00045 146 FSVAKRVRTETG-IGAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAE 224 (423)
T ss_pred HHHHhhHhhhcC-CCCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence 444554443332 222355666666533222 257799999999999999999999999868999999888765 557
Q ss_pred hcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 113 NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 113 ~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
++|.+ +++. .++.+.+. ++|+|++|++.+.
T Consensus 225 ~~g~~-~~~~----~~~~~~l~-----~aDvVI~aT~s~~ 254 (423)
T PRK00045 225 EFGGE-AIPL----DELPEALA-----EADIVISSTGAPH 254 (423)
T ss_pred HcCCc-EeeH----HHHHHHhc-----cCCEEEECCCCCC
Confidence 77754 3322 22222222 5899999999755
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.3e-05 Score=56.36 Aligned_cols=74 Identities=23% Similarity=0.317 Sum_probs=54.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc--EEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVT--EFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~--~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
++.+++|.|+|++|.+++..+...|+++|+++.|+.++.+.+ ++++.. .+++.. ++.+.+. .+|+|++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~----~~~~~~~-----~~DivI~ 81 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLE----DLEEALQ-----EADIVIN 81 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGG----GHCHHHH-----TESEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHH----HHHHHHh-----hCCeEEE
Confidence 578999999999999999999999997799999999887776 445322 233332 2222222 5999999
Q ss_pred cCCcHH
Q 025257 147 CIGNVS 152 (255)
Q Consensus 147 ~~g~~~ 152 (255)
|++.+.
T Consensus 82 aT~~~~ 87 (135)
T PF01488_consen 82 ATPSGM 87 (135)
T ss_dssp -SSTTS
T ss_pred ecCCCC
Confidence 988764
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.8e-05 Score=59.08 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=59.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC----cEEeCCCCCCchHHHHHHhhcCC--Cc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV----TEFVNPKDHDKPIQQVLVDLTDG--GV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~----~~vi~~~~~~~~~~~~i~~~~~~--~~ 141 (255)
+++.++|+|+ +++|.+.++.+...|+ +|+.+.|+.++++.+ .+++. ...+|-.+ .......+...... .+
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD-~~~~~~~i~~~~~~~g~i 82 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD-RAAVEAAIEALPEEFGRI 82 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC-HHHHHHHHHHHHHhhCcc
Confidence 4578999998 8999999999999999 999999999999988 45662 23355544 12444445544444 69
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+.+++.|-
T Consensus 83 DiLvNNAGl 91 (246)
T COG4221 83 DILVNNAGL 91 (246)
T ss_pred cEEEecCCC
Confidence 999998884
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.3e-05 Score=62.72 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=76.2
Q ss_pred cccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHH
Q 025257 51 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 130 (255)
Q Consensus 51 ~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~ 130 (255)
+..+....+..+.+...++++++||.+|+| .|..+..+++..|+ +|++++.+++..+.+++.....-+.... .++.
T Consensus 148 L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~--~D~~ 223 (383)
T PRK11705 148 LEEAQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRL--QDYR 223 (383)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEE--Cchh
Confidence 333444455556677889999999999986 47788888988899 9999999999999887643211111111 2221
Q ss_pred HHHHhhcCCCccEEEe-----cCCc---HHHHHHHHHHhccCCceEEEEc
Q 025257 131 QVLVDLTDGGVDYSFE-----CIGN---VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 131 ~~i~~~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+. .+.||.|+. .+|. +..++.+.+.|+++ |+++...
T Consensus 224 ----~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~ 267 (383)
T PRK11705 224 ----DL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHT 267 (383)
T ss_pred ----hc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 11 237998864 3343 23478888899997 9888754
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00029 Score=56.11 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=57.3
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----CCc-EE--eCCCCCCchHHHHHH-hhc
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----GVT-EF--VNPKDHDKPIQQVLV-DLT 137 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g~~-~v--i~~~~~~~~~~~~i~-~~~ 137 (255)
...+.+++|+|| +++|...+..+...|. +++.+.|++++++.+. ++ |.. .+ +|..+ .+-.+.+. +..
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~--~~~~~~l~~~l~ 79 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSD--PEALERLEDELK 79 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC--hhHHHHHHHHHH
Confidence 346789999998 8999999999999999 9999999999988873 32 221 12 34443 33333333 222
Q ss_pred C-C-CccEEEecCCc
Q 025257 138 D-G-GVDYSFECIGN 150 (255)
Q Consensus 138 ~-~-~~d~v~d~~g~ 150 (255)
. + .+|+.++++|-
T Consensus 80 ~~~~~IdvLVNNAG~ 94 (265)
T COG0300 80 ERGGPIDVLVNNAGF 94 (265)
T ss_pred hcCCcccEEEECCCc
Confidence 2 2 79999999994
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00035 Score=55.13 Aligned_cols=103 Identities=24% Similarity=0.343 Sum_probs=67.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc---CCcEEe--CCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF---GVTEFV--NPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~---g~~~vi--~~~~~~~~~~~~i~~~~~--~~ 140 (255)
++++|+|+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ ++. +.-+.+ |..+ +..+.+.+.+... ++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS-TESARNVIEKAAKVLNA 81 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence 4679999997 9999999999999999 999999988877665 222 221222 3222 1223322322211 26
Q ss_pred ccEEEecCCcHH-----------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 141 VDYSFECIGNVS-----------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 141 ~d~v~d~~g~~~-----------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+|.++.+.+... .++..+++++.+ |+++.++...
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~~ 138 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSMS 138 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecch
Confidence 899998887421 144555667776 8999888653
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00029 Score=53.30 Aligned_cols=93 Identities=25% Similarity=0.305 Sum_probs=65.2
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecCCc-
Q 025257 74 VAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIGN- 150 (255)
Q Consensus 74 vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~- 150 (255)
|+|+|+ |.+|..+++.+...|. +|++++|++++.+. ..+.+.+ .|..+ . +.+.+... ++|.||.+.|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~~~~d~~d--~---~~~~~al~-~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEIIQGDLFD--P---DSVKAALK-GADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEEEESCTTC--H---HHHHHHHT-TSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccccceeeehh--h---hhhhhhhh-hcchhhhhhhhh
Confidence 789998 9999999999999998 99999999998877 4455443 23332 3 23333322 69999999984
Q ss_pred ---HHHHHHHHHHhccC-CceEEEEccCC
Q 025257 151 ---VSVMRAALECCHKG-WGTSVIVGVAA 175 (255)
Q Consensus 151 ---~~~~~~~~~~l~~~-~G~~v~~g~~~ 175 (255)
.......++.++.. -.+++.++...
T Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 72 PKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp TTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred cccccccccccccccccccccceeeeccc
Confidence 22356666766553 13777776653
|
... |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00024 Score=57.63 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=56.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHH---hhcCCCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLV---DLTDGGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~---~~~~~~~d~v 144 (255)
.+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+.+.+.+.+ .|..+ +..+.+.+. +..++.+|++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~~g~id~l 80 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAE-PESIAALVAQVLELSGGRLDAL 80 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCC-HHHHHHHHHHHHHHcCCCccEE
Confidence 4578999998 9999999999988999 99999999888887776665433 34443 122322233 2233479999
Q ss_pred EecCC
Q 025257 145 FECIG 149 (255)
Q Consensus 145 ~d~~g 149 (255)
+++.|
T Consensus 81 i~~Ag 85 (277)
T PRK05993 81 FNNGA 85 (277)
T ss_pred EECCC
Confidence 99876
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00022 Score=58.23 Aligned_cols=97 Identities=24% Similarity=0.293 Sum_probs=63.5
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCcE-EeCCCCCCchHHHHHHhhcCCCcc
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTE-FVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~~-vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
.+++++||-.|+|+ |..++.+++ .|+.+|++++.++...+.+++. +... +.... .+ ......+.||
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~---~~----~~~~~~~~fD 227 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL---IY----LEQPIEGKAD 227 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe---cc----cccccCCCce
Confidence 46789999999987 777776665 5766999999998877777542 2211 11111 11 1111223799
Q ss_pred EEEecCCcH---HHHHHHHHHhccCCceEEEEccC
Q 025257 143 YSFECIGNV---SVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 143 ~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+|+...... ..+..+.+.++++ |+++..|..
T Consensus 228 lVvan~~~~~l~~ll~~~~~~Lkpg-G~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAEVIKELYPQFSRLVKPG-GWLILSGIL 261 (288)
T ss_pred EEEEecCHHHHHHHHHHHHHHcCCC-cEEEEEeCc
Confidence 999655433 2356778899997 999887753
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00052 Score=52.80 Aligned_cols=102 Identities=25% Similarity=0.425 Sum_probs=69.2
Q ss_pred HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----hcC-CcEEeCCCCCCchHHHHHHhh
Q 025257 63 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAK----NFG-VTEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 63 ~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~----~~g-~~~vi~~~~~~~~~~~~i~~~ 136 (255)
.....+.++++|+..|+|+ |..++.+++..+. .+|++++.+++..+.++ ..| .+.+.... .+..+.+...
T Consensus 33 l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~---~d~~~~l~~~ 108 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK---GEAPEILFTI 108 (198)
T ss_pred HHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE---echhhhHhhc
Confidence 3567889999999999987 8888888887642 38999999998877664 355 23222111 2222222222
Q ss_pred cCCCccEEEecCCc---HHHHHHHHHHhccCCceEEE
Q 025257 137 TDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVI 170 (255)
Q Consensus 137 ~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~ 170 (255)
.+.+|.||...+. ...++.+.+.|+++ |+++.
T Consensus 109 -~~~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~ 143 (198)
T PRK00377 109 -NEKFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVI 143 (198)
T ss_pred -CCCCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEE
Confidence 2379999975542 33477888899997 99875
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00022 Score=53.92 Aligned_cols=77 Identities=21% Similarity=0.252 Sum_probs=56.2
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC---cEEeCCCCCCch-HHHHHHhhcCC--CccE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV---TEFVNPKDHDKP-IQQVLVDLTDG--GVDY 143 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~---~~vi~~~~~~~~-~~~~i~~~~~~--~~d~ 143 (255)
|.+|||+|+ +++|++.++-....|- +||+..|++++.+.++.... ..+.|-.+ .+ ..+.+.++... ..++
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d--~~~~~~lvewLkk~~P~lNv 81 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVAD--RDSRRELVEWLKKEYPNLNV 81 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccc--hhhHHHHHHHHHhhCCchhe
Confidence 578999976 8999999999999999 99999999999999876442 34445444 33 22223333333 5899
Q ss_pred EEecCCc
Q 025257 144 SFECIGN 150 (255)
Q Consensus 144 v~d~~g~ 150 (255)
++++.|-
T Consensus 82 liNNAGI 88 (245)
T COG3967 82 LINNAGI 88 (245)
T ss_pred eeecccc
Confidence 9998883
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00065 Score=56.07 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=71.4
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHhh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~~ 136 (255)
+.+...++++++||..|+|. |..++.+++..+. ..|++++.+++..+.++ +.|.+.+.... .+..+...+.
T Consensus 72 ll~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~---gD~~~~~~~~ 147 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC---GDGYYGVPEF 147 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe---CChhhccccc
Confidence 34666788999999999984 9999999998763 26999999988666553 45654332212 2222222111
Q ss_pred cCCCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 137 TDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 137 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+.+|+|+.+.+.+......++.++++ |+++..
T Consensus 148 --~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~ 179 (322)
T PRK13943 148 --APYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP 179 (322)
T ss_pred --CCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence 26999998888766466788899997 987764
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00093 Score=50.93 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=63.6
Q ss_pred hcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCC-Cc
Q 025257 65 TAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDG-GV 141 (255)
Q Consensus 65 ~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~-~~ 141 (255)
...++++++||.+|+|+-+. +..+++.. +..+|++++.++.. +..+...+ .|..+ .+..+.+.+..++ ++
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~-~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~--~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGW-SQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD--EEVLNKIRERVGDDKV 99 (188)
T ss_pred hcccCCCCEEEEecCCCCHH-HHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC--hhHHHHHHHHhCCCCc
Confidence 45578999999999876444 44444443 43389999998754 11233322 23333 4444555555555 89
Q ss_pred cEEEe-cC----Cc------------HHHHHHHHHHhccCCceEEEEc
Q 025257 142 DYSFE-CI----GN------------VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 142 d~v~d-~~----g~------------~~~~~~~~~~l~~~~G~~v~~g 172 (255)
|+|+. .. |. ...+..+.++|+++ |+++...
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEE
Confidence 99994 32 21 33578889999997 9988754
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00027 Score=57.11 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=55.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhc--CCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~--~~~~d~v~ 145 (255)
++++++|+|+ |++|...++.+...|+ +|+++++++++.+.+.+.+...+ .|-.+ ++.+.+.+.+.. .+++|+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~~~id~li 79 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTD-EASIKAAVDTIIAEEGRIDVLV 79 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCEEE
Confidence 3578999997 9999999999988999 99999999887776655554432 34433 133333333322 13799999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 80 ~~ag~ 84 (273)
T PRK06182 80 NNAGY 84 (273)
T ss_pred ECCCc
Confidence 99884
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00084 Score=51.10 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=59.0
Q ss_pred CCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCc-EEeCCCCCCch---HHHHHHhhcCCCccE
Q 025257 71 GSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVT-EFVNPKDHDKP---IQQVLVDLTDGGVDY 143 (255)
Q Consensus 71 ~~~vlI~G~--g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~vi~~~~~~~~---~~~~i~~~~~~~~d~ 143 (255)
.+.|||+|+ |++|.+++.-....|+ .|+++.|+-+.+..+. +.|.. .=+|-.+ +++ +..++++.+.|..|+
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~-~~~V~~v~~evr~~~~Gkld~ 84 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSK-PEEVVTVSGEVRANPDGKLDL 84 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCC-hHHHHHHHHHHhhCCCCceEE
Confidence 468999985 8999999999999999 9999999999888875 77742 2244333 133 445667766678999
Q ss_pred EEecCCc
Q 025257 144 SFECIGN 150 (255)
Q Consensus 144 v~d~~g~ 150 (255)
.++..|.
T Consensus 85 L~NNAG~ 91 (289)
T KOG1209|consen 85 LYNNAGQ 91 (289)
T ss_pred EEcCCCC
Confidence 9998775
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0017 Score=51.22 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH-HhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA-KNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~-~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
+++++||+|+ |++|..+++.+...|+ +|+.+.+ ++++.+.+ .+.+...+ .|..+ ...+.+.+.+. +++|+++
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~id~li 80 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD-RDAVIDVVRKS--GALDILV 80 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC-HHHHHHHHHHh--CCCcEEE
Confidence 4689999997 9999999999999999 8887764 44444444 44555433 34332 12233333322 3699999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 81 ~~ag~ 85 (237)
T PRK12742 81 VNAGI 85 (237)
T ss_pred ECCCC
Confidence 98874
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.001 Score=49.72 Aligned_cols=104 Identities=28% Similarity=0.343 Sum_probs=70.3
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcEEeCCCCCCchHHHHHHhhcCC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
.+.+++||+.++=.|+|+ |..++++++..-..+|++++++++..+.. +++|.+.+.--. .+-.+.+.+..
T Consensus 28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~---g~Ap~~L~~~~-- 101 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE---GDAPEALPDLP-- 101 (187)
T ss_pred HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe---ccchHhhcCCC--
Confidence 556889999888789864 77788888544444999999999887776 457876432111 22223333221
Q ss_pred CccEEEecCCc--HHHHHHHHHHhccCCceEEEEccC
Q 025257 140 GVDYSFECIGN--VSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 140 ~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.+|.+|---|. +..++.+|..|+++ |++|.-...
T Consensus 102 ~~daiFIGGg~~i~~ile~~~~~l~~g-grlV~nait 137 (187)
T COG2242 102 SPDAIFIGGGGNIEEILEAAWERLKPG-GRLVANAIT 137 (187)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEeec
Confidence 59999953332 34588999999997 999876543
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00039 Score=49.38 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=66.3
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.-.++.++++.|.| .|...++.++..|. +|++++.+++..+.+++.+.+.+.+.-- ++++ .+- +++|+++.
T Consensus 13 ~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf-~p~~--~~y----~~a~liys 83 (134)
T PRK04148 13 EKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLF-NPNL--EIY----KNAKLIYS 83 (134)
T ss_pred ccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCC-CCCH--HHH----hcCCEEEE
Confidence 33456789999998 78766777778899 9999999999999998888765543221 0222 111 27999999
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEE
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.-..+.....++++.+.-+..++..
T Consensus 84 irpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 84 IRPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred eCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 8888885556666655531344444
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00035 Score=56.49 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=55.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEEEec
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYSFEC 147 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v~d~ 147 (255)
+++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+.+...+ .|..+ ++.+.+.+..... +++|+++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~id~vi~~ 79 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVND-GAALARLAEELEAEHGGLDVLINN 79 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCEEEEC
Confidence 47899998 9999999999999999 99999998887777766565433 45443 1333333333322 379999999
Q ss_pred CCc
Q 025257 148 IGN 150 (255)
Q Consensus 148 ~g~ 150 (255)
.|.
T Consensus 80 ag~ 82 (274)
T PRK05693 80 AGY 82 (274)
T ss_pred CCC
Confidence 883
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00049 Score=59.16 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=57.0
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
...++++|+|.|+|.+|..+++.++..|+.+|+++.++.++.+ +++++|.. .++. .++.+.+. ++|+||
T Consensus 176 ~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~-~i~~----~~l~~~l~-----~aDvVi 245 (417)
T TIGR01035 176 GSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE-AVKF----EDLEEYLA-----EADIVI 245 (417)
T ss_pred CCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe-EeeH----HHHHHHHh-----hCCEEE
Confidence 3467899999999999999999999999658999999888755 55677764 2221 22333332 599999
Q ss_pred ecCCcHH
Q 025257 146 ECIGNVS 152 (255)
Q Consensus 146 d~~g~~~ 152 (255)
+|++.+.
T Consensus 246 ~aT~s~~ 252 (417)
T TIGR01035 246 SSTGAPH 252 (417)
T ss_pred ECCCCCC
Confidence 9998755
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=48.54 Aligned_cols=99 Identities=24% Similarity=0.322 Sum_probs=64.5
Q ss_pred HHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC
Q 025257 61 AVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 61 ~l~~~~~-~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
++.+... .-.|++++|.|-|.+|...++.++.+|+ +|++++.+|.+.-.+..-|... ..+.+.+.
T Consensus 12 ~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~v--------~~~~~a~~----- 77 (162)
T PF00670_consen 12 GIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFEV--------MTLEEALR----- 77 (162)
T ss_dssp HHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-EE--------E-HHHHTT-----
T ss_pred HHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcEe--------cCHHHHHh-----
Confidence 3434433 4578999999999999999999999999 9999999997777766667542 22333332
Q ss_pred CccEEEecCCcHHH-HHHHHHHhccCCceEEEEccC
Q 025257 140 GVDYSFECIGNVSV-MRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 140 ~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~ 174 (255)
..|+++.++|.... -.+-++.|+.+ ..+..+|..
T Consensus 78 ~adi~vtaTG~~~vi~~e~~~~mkdg-ail~n~Gh~ 112 (162)
T PF00670_consen 78 DADIFVTATGNKDVITGEHFRQMKDG-AILANAGHF 112 (162)
T ss_dssp T-SEEEE-SSSSSSB-HHHHHHS-TT-EEEEESSSS
T ss_pred hCCEEEECCCCccccCHHHHHHhcCC-eEEeccCcC
Confidence 58999999998763 35778889995 666666653
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=53.12 Aligned_cols=110 Identities=21% Similarity=0.330 Sum_probs=72.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE-E----eCCCCCCchHHHHHHhhc--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F----VNPKDHDKPIQQVLVDLT-- 137 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v----i~~~~~~~~~~~~i~~~~-- 137 (255)
.++.|+|+|| +++|.+.+.-+...|+ +++.+++..++.+.+ ++.+... + .|-.+ .++..+.+.+..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~-~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD-EESVKKFVEWAIRH 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC-HHHHHHHHHHHHHh
Confidence 4689999998 8999999988888999 888888888777666 3444322 2 12222 133333332221
Q ss_pred CCCccEEEecCCcHH-------------------------HHHHHHHHhccCC-ceEEEEccCCCCCccc
Q 025257 138 DGGVDYSFECIGNVS-------------------------VMRAALECCHKGW-GTSVIVGVAASGQEIS 181 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~ 181 (255)
-|++|+.+++.|-.. ....++..|++.+ |+++.+++..+...++
T Consensus 89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P 158 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLP 158 (282)
T ss_pred cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCC
Confidence 237999999888421 2456677776533 8999998866544433
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=97.58 E-value=6.9e-05 Score=60.44 Aligned_cols=100 Identities=23% Similarity=0.332 Sum_probs=62.5
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-EE-eCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT-EF-VNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v-i~~~~~~~~~~~~i~~ 135 (255)
+.++.+++||++||-+|+| .|..+..+++..|+ +|++++.|++..+.++ +.|.. .+ +.. .++ ++
T Consensus 54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~----~D~----~~ 123 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRL----QDY----RD 123 (273)
T ss_dssp HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE----S-G----GG
T ss_pred HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE----eec----cc
Confidence 5688999999999999987 47788889999999 9999999999988874 45532 11 111 111 22
Q ss_pred hcCCCccEEE-----ecCCc---HHHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDGGVDYSF-----ECIGN---VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~~~d~v~-----d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
... .||.|+ +.+|. +.-++.+.+.|+|+ |++++-..
T Consensus 124 ~~~-~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq~i 167 (273)
T PF02353_consen 124 LPG-KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQTI 167 (273)
T ss_dssp ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEEEE
T ss_pred cCC-CCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEEec
Confidence 222 688885 34543 23378888899997 98875433
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00032 Score=56.17 Aligned_cols=105 Identities=17% Similarity=0.331 Sum_probs=75.6
Q ss_pred hhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-E--E--eCCCCCCc
Q 025257 57 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-E--F--VNPKDHDK 127 (255)
Q Consensus 57 ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~--v--i~~~~~~~ 127 (255)
.++..+.++.+++||++||-+|+|- |.+++..|+..|+ +|++++-|++..+.+++ .|.. . + -|+++
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd--- 133 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD--- 133 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc---
Confidence 3444567899999999999999985 8889999999999 99999999998888744 5543 1 1 12221
Q ss_pred hHHHHHHhhcCCCccEEE-----ecCCc---HHHHHHHHHHhccCCceEEEEccCCC
Q 025257 128 PIQQVLVDLTDGGVDYSF-----ECIGN---VSVMRAALECCHKGWGTSVIVGVAAS 176 (255)
Q Consensus 128 ~~~~~i~~~~~~~~d~v~-----d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~ 176 (255)
+.+ .||-|+ +.+|. +.-+..+-++|+++ |++.+-.....
T Consensus 134 --------~~e-~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~~ 180 (283)
T COG2230 134 --------FEE-PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITGP 180 (283)
T ss_pred --------ccc-ccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecCC
Confidence 211 477764 45554 23377888899997 99887766543
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00068 Score=51.19 Aligned_cols=90 Identities=31% Similarity=0.375 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
-.|.+|.|+|.|.+|...++.++..|. +|++.+++........+.+... .++.+.+. ..|+|+.+.
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~--------~~l~ell~-----~aDiv~~~~ 99 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEY--------VSLDELLA-----QADIVSLHL 99 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEE--------SSHHHHHH-----H-SEEEE-S
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccccee--------eehhhhcc-----hhhhhhhhh
Confidence 468999999999999999999999999 9999999887766455555421 33444444 378888665
Q ss_pred Cc-HH----HHHHHHHHhccCCceEEEEcc
Q 025257 149 GN-VS----VMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~-~~----~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.. +. .-...+..++++ ..+|.++-
T Consensus 100 plt~~T~~li~~~~l~~mk~g-a~lvN~aR 128 (178)
T PF02826_consen 100 PLTPETRGLINAEFLAKMKPG-AVLVNVAR 128 (178)
T ss_dssp SSSTTTTTSBSHHHHHTSTTT-EEEEESSS
T ss_pred ccccccceeeeeeeeeccccc-eEEEeccc
Confidence 52 21 125667888885 77776643
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0019 Score=50.91 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC----CcEE-eCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG----VTEF-VNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g----~~~v-i~~~~~~~~~~~~i~~~~~--~~ 140 (255)
++.+++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +++. ...+ .|..+ ...+.+.+.+... ++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRD-EADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence 4678999997 9999999988888899 999999988766554 3332 2211 23222 1233333333321 26
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|.++++.|.
T Consensus 83 ~d~vi~~ag~ 92 (237)
T PRK07326 83 LDVLIANAGV 92 (237)
T ss_pred CCEEEECCCC
Confidence 9999998764
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00045 Score=47.66 Aligned_cols=92 Identities=27% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHH-HcCCCeEEEEcCCcchHHHHHhc----CC-cEE-eCCCCCCchHHHHHHhhcCCCcc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRAKNF----GV-TEF-VNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~-~~g~~~v~~~~~~~~~~~~~~~~----g~-~~v-i~~~~~~~~~~~~i~~~~~~~~d 142 (255)
|+.+||-.|+|. |..+..+++ ..++ +|++++.+++-.+.+++. +. +.+ +-. .++ ..... ..+.||
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~----~d~-~~~~~-~~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQ----GDA-EFDPD-FLEPFD 72 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE----SCC-HGGTT-TSSCEE
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE----Ccc-ccCcc-cCCCCC
Confidence 688999999875 888888888 4677 999999999888887542 22 222 111 222 11111 112799
Q ss_pred EEEecC-Cc---------HHHHHHHHHHhccCCceEEE
Q 025257 143 YSFECI-GN---------VSVMRAALECCHKGWGTSVI 170 (255)
Q Consensus 143 ~v~d~~-g~---------~~~~~~~~~~l~~~~G~~v~ 170 (255)
+|+... .. ...++.+.+.|+++ |+++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi 109 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVI 109 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEE
Confidence 999765 21 12378888999997 98875
|
... |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00092 Score=53.34 Aligned_cols=77 Identities=25% Similarity=0.353 Sum_probs=54.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchH---HHHHHhhcCCCccEEEe
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPI---QQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~---~~~i~~~~~~~~d~v~d 146 (255)
++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+++.+++.+ .|..+ ...+ .+.+....++.+|.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~~~~~ii~ 80 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDD-PESVERAADEVIALTDNRLYGLFN 80 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCC-HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 47999998 9999999999999999 99999999888888777776543 34332 1222 22333323346888888
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
+.|.
T Consensus 81 ~ag~ 84 (256)
T PRK08017 81 NAGF 84 (256)
T ss_pred CCCC
Confidence 7763
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00053 Score=57.13 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=53.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHH---HHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQ---QVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~---~~i~~~~~ 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+ ++.|.+. ..|-.+ ++... +.+.+..
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~~~~~~- 82 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD-ADQVKALATQAASFG- 82 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHhc-
Confidence 4689999998 8999999999999999 999999988876544 3445432 124333 12222 2222222
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 83 g~iD~lVnnAG~ 94 (330)
T PRK06139 83 GRIDVWVNNVGV 94 (330)
T ss_pred CCCCEEEECCCc
Confidence 379999999883
|
|
| >PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0026 Score=51.89 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=71.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHH-HcCCCeEEEEcCCcchHHHHHhcCC-cEEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRAKNFGV-TEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~-~~g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
..+.|+|.+| +.+++.++..++ ..+..++|+++ |+.+..+.+.+|+ +.++.|.+ +.++....--+++|
T Consensus 135 ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve~lg~Yd~V~~Yd~--------i~~l~~~~~~v~VD 205 (314)
T PF11017_consen 135 GAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVESLGCYDEVLTYDD--------IDSLDAPQPVVIVD 205 (314)
T ss_pred CccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhhccCCceEEeehhh--------hhhccCCCCEEEEE
Confidence 4467888877 888888888888 55544899888 6777789999995 77887754 44443335667889
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEEccCCC
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIVGVAAS 176 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~ 176 (255)
..|.......+-..++..--..+.+|....
T Consensus 206 faG~~~~~~~Lh~~l~d~l~~~~~VG~th~ 235 (314)
T PF11017_consen 206 FAGNGEVLAALHEHLGDNLVYSCLVGATHW 235 (314)
T ss_pred CCCCHHHHHHHHHHHhhhhhEEEEEEccCc
Confidence 999999777777788764245677777543
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00073 Score=59.38 Aligned_cols=75 Identities=25% Similarity=0.265 Sum_probs=56.0
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.+.++++|+|+|.|..|++++++++..|+ +|++.+..+++.+.+++.|+..+ ... ...+.+. .+|+|+.
T Consensus 8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~~-~~~----~~~~~l~-----~~D~VV~ 76 (488)
T PRK03369 8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVATV-STS----DAVQQIA-----DYALVVT 76 (488)
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEEE-cCc----chHhHhh-----cCCEEEE
Confidence 35678999999999999999999999999 99999977666666777787433 211 1112222 4799999
Q ss_pred cCCcHH
Q 025257 147 CIGNVS 152 (255)
Q Consensus 147 ~~g~~~ 152 (255)
+.|.+.
T Consensus 77 SpGi~~ 82 (488)
T PRK03369 77 SPGFRP 82 (488)
T ss_pred CCCCCC
Confidence 988654
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00093 Score=53.39 Aligned_cols=79 Identities=28% Similarity=0.411 Sum_probs=53.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v 144 (255)
++++|+|+|+ |++|...++.+...|+ +|+++++++.+.+.. .+++...+ .|..+ +..+.+.+.+... +.+|++
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~v 83 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTD-EDAVNALFDTAAETYGSVDIA 83 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 5789999998 9999999999999999 999999887766554 34443322 24333 1223223333221 268999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+.+.|.
T Consensus 84 i~~ag~ 89 (255)
T PRK06057 84 FNNAGI 89 (255)
T ss_pred EECCCc
Confidence 998874
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00059 Score=53.08 Aligned_cols=101 Identities=20% Similarity=0.278 Sum_probs=67.5
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLV 134 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~ 134 (255)
+.....++++++||-.|+|. |..+..+++..+. .+|++++.+++-.+.+++ .|... ++..+. ...+
T Consensus 68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~-~~~~----- 140 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG-TLGY----- 140 (212)
T ss_pred HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc-ccCC-----
Confidence 45677899999999999874 7777788877653 299999999887776643 44322 221110 0101
Q ss_pred hhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
...+.||.|+-....+...+..++.|+++ |+++..
T Consensus 141 -~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~ 175 (212)
T PRK13942 141 -EENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP 175 (212)
T ss_pred -CcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence 01137999985554455467888899997 998765
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0025 Score=51.18 Aligned_cols=79 Identities=29% Similarity=0.349 Sum_probs=53.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc--E-EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVT--E-FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~--~-vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
++++++|+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++.. . ..|..+ ++.+.+.+.+... +.+|
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITD-DAAIERAVATVVARFGRVD 82 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4679999997 9999999999999999 999999988765554 444422 1 123333 1333333333221 3689
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 83 ~lv~~ag~ 90 (261)
T PRK08265 83 ILVNLACT 90 (261)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0029 Score=55.05 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=51.1
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHH-HHhcCCcEE-eCCCCCCchHHHHH-Hhhc--CCC
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDR-AKNFGVTEF-VNPKDHDKPIQQVL-VDLT--DGG 140 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~--~~~~-~~~~g~~~v-i~~~~~~~~~~~~i-~~~~--~~~ 140 (255)
.+++++||+|+ |++|...++.+...|+ +|+++++++. +.+. .++++...+ .|..+ .+-.+.+ .... .++
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~ 284 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITA--PDAPARIAEHLAERHGG 284 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC--HHHHHHHHHHHHHhCCC
Confidence 35789999998 9999999999999999 9999887432 2222 244554322 34443 3322222 2221 126
Q ss_pred ccEEEecCC
Q 025257 141 VDYSFECIG 149 (255)
Q Consensus 141 ~d~v~d~~g 149 (255)
+|+++++.|
T Consensus 285 id~vi~~AG 293 (450)
T PRK08261 285 LDIVVHNAG 293 (450)
T ss_pred CCEEEECCC
Confidence 999999988
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0022 Score=53.98 Aligned_cols=94 Identities=21% Similarity=0.228 Sum_probs=65.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC---Cc-EEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG---VT-EFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g---~~-~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
.+|||+|+|.+|+.+++.+.+.|-.+|++.+++.++.+.+.+.. .. ..+|-.+ .+.+.+.++ ++|+|++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d-~~al~~li~-----~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD-VDALVALIK-----DFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC-hHHHHHHHh-----cCCEEEEe
Confidence 57999999999999999999888449999999999998886653 22 3445443 123333343 46999999
Q ss_pred CCcHHHHHHHH-HHhccCCceEEEEcc
Q 025257 148 IGNVSVMRAAL-ECCHKGWGTSVIVGV 173 (255)
Q Consensus 148 ~g~~~~~~~~~-~~l~~~~G~~v~~g~ 173 (255)
......+ .++ .+++.+ =.++....
T Consensus 76 ~p~~~~~-~i~ka~i~~g-v~yvDts~ 100 (389)
T COG1748 76 APPFVDL-TILKACIKTG-VDYVDTSY 100 (389)
T ss_pred CCchhhH-HHHHHHHHhC-CCEEEccc
Confidence 9987744 444 455553 45555544
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0023 Score=56.53 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=67.2
Q ss_pred hhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---------cC------CcEE-eCCCCCC
Q 025257 64 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN---------FG------VTEF-VNPKDHD 126 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~---------~g------~~~v-i~~~~~~ 126 (255)
...+.+.+++|||+|+ |.+|..+++.+...|+ +|++++++.++.+.+.+ .| +..+ .|-.+
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD-- 149 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK-- 149 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC--
Confidence 4456678899999998 9999999999988999 99999998887655421 12 1111 23322
Q ss_pred chHHHHHHhhcCCCccEEEecCCcHH---------------HHHHHHHHhcc-CCceEEEEccCC
Q 025257 127 KPIQQVLVDLTDGGVDYSFECIGNVS---------------VMRAALECCHK-GWGTSVIVGVAA 175 (255)
Q Consensus 127 ~~~~~~i~~~~~~~~d~v~d~~g~~~---------------~~~~~~~~l~~-~~G~~v~~g~~~ 175 (255)
. +.+.+.. +++|+||++.|... ....+++.+.. +.++||.++...
T Consensus 150 ~---esI~~aL-ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig 210 (576)
T PLN03209 150 P---DQIGPAL-GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG 210 (576)
T ss_pred H---HHHHHHh-cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence 2 2233332 26999999987531 12233444333 226899887754
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0014 Score=50.64 Aligned_cols=100 Identities=20% Similarity=0.196 Sum_probs=66.7
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHH----hcCCc---EEeCCCCCCchHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAK----NFGVT---EFVNPKDHDKPIQQV 132 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~----~~g~~---~vi~~~~~~~~~~~~ 132 (255)
+.+...++++++||-.|+|. |..+..+++..+ . +|++++.+++-.+.++ ..+.. .++..+ ..+.
T Consensus 64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g-~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d-----~~~~ 136 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRG-KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD-----GKRG 136 (205)
T ss_pred HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC-----cccC
Confidence 44667788999999999875 777777787764 4 8999999988766654 34432 122211 1111
Q ss_pred HHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 133 LVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 133 i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+.. .+.||.|+-+.......+...+.|+++ |+++..
T Consensus 137 ~~~--~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~ 172 (205)
T PRK13944 137 LEK--HAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP 172 (205)
T ss_pred Ccc--CCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence 111 137999986655555457888999997 988764
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00042 Score=53.59 Aligned_cols=101 Identities=25% Similarity=0.328 Sum_probs=66.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHH----HhcCCcEE-eCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRA----KNFGVTEF-VNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~----~~~g~~~v-i~~~~~~~~~~~~i~~ 135 (255)
+.+...++||++||-.|+|. |..++-+++..|.. +|+.+++.++-.+.+ +++|.+.+ +...+ . ..-
T Consensus 64 ~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd--g-----~~g 135 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD--G-----SEG 135 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES---G-----GGT
T ss_pred HHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc--h-----hhc
Confidence 45778899999999999874 78888888887743 689999887655544 44565432 11111 1 111
Q ss_pred hcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 136 LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 136 ~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+... +||.|+-+.+.+..-...++.|+++ |+++..
T Consensus 136 ~~~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~p 171 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAP 171 (209)
T ss_dssp TGGG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEE
T ss_pred cccCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEE
Confidence 1122 7999998877776457888999997 988874
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0038 Score=52.14 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=53.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
++++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++.|... ..|..+ ++.+.+.+..... +
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d-~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD-AEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHHHHCC
Confidence 4678999998 9999999999999999 999999988766544 2345432 134333 1223222222211 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 79999998884
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0033 Score=49.87 Aligned_cols=101 Identities=22% Similarity=0.254 Sum_probs=61.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHH----HhcCCc--E-EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRA----KNFGVT--E-FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~~~----~~~g~~--~-vi~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |.+|...++.+...|. +|+++.++.+ +.+.+ +..+.. . ..|..+ ++++.+.+.+...
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD-EESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhC
Confidence 4578999997 9999999998888999 9999887653 22222 222322 1 124333 1223333332221
Q ss_pred CCccEEEecCCcH-------------------HHHHHHHHHhccCCceEEEEcc
Q 025257 139 GGVDYSFECIGNV-------------------SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 139 ~~~d~v~d~~g~~-------------------~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+++|+++.+.+.. ..++.+.+.+..+ |+++.++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS 135 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS 135 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence 2689998877642 1244555555565 78888865
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0028 Score=44.40 Aligned_cols=101 Identities=23% Similarity=0.332 Sum_probs=66.4
Q ss_pred HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHHhh
Q 025257 63 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 63 ~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~~~ 136 (255)
.....+.++++|+-.|+|. |..+..+++..+..+|++++.++...+.+++ .+... ++.... ... ....
T Consensus 12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~---~~~~ 85 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA--PEA---LEDS 85 (124)
T ss_pred HHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc--ccc---Chhh
Confidence 3555677888999999976 8888899988753499999999887777643 34322 221111 110 1111
Q ss_pred cCCCccEEEecCCc---HHHHHHHHHHhccCCceEEEE
Q 025257 137 TDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 137 ~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.+.+|.|+-.... ...++.+.+.|+++ |+++.-
T Consensus 86 -~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~ 121 (124)
T TIGR02469 86 -LPEPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLN 121 (124)
T ss_pred -cCCCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEE
Confidence 1279999865432 23478889999997 998764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0017 Score=50.78 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=52.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE--EeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
++++|+|+ |++|...++.+...|+ +|+++++++++.+.+++.+... ..|-.+ .+.+.+.+.....+++|+++.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~id~vi~~a 79 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMND-PASLDQLLQRLQGQRFDLLFVNA 79 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCC-HHHHHHHHHHhhcCCCCEEEEcC
Confidence 47899997 9999999988888999 9999999888776665543221 233333 12333333333333799999887
Q ss_pred Cc
Q 025257 149 GN 150 (255)
Q Consensus 149 g~ 150 (255)
|.
T Consensus 80 g~ 81 (225)
T PRK08177 80 GI 81 (225)
T ss_pred cc
Confidence 64
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=51.58 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHhcCCcEE-eCCCCCCchHHHHHHhhcC--CCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR----AKNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~----~~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
+++++||+|+ |.+|..+++.+...|+ +|+++++++++.+. ++..+...+ .|..+ .+++.+.+.+... +++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVD-PQAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCC-HHHHHHHHHHHHHHhCCc
Confidence 3689999998 9999999998888899 99999987765332 222333322 23222 1233332332221 279
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++++.|.
T Consensus 84 d~vi~~ag~ 92 (239)
T PRK12828 84 DALVNIAGA 92 (239)
T ss_pred CEEEECCcc
Confidence 999998773
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0016 Score=52.67 Aligned_cols=78 Identities=28% Similarity=0.341 Sum_probs=52.9
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC-CcEE-eCCCCCCchHHHHHHhhcC--CCccEE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG-VTEF-VNPKDHDKPIQQVLVDLTD--GGVDYS 144 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g-~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v 144 (255)
+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++ ...+ .|..+ ++.+.+.+.+... +++|++
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~l 82 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTD-PASFAAFLDAVEADLGPIDVL 82 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 578999998 9999999998888999 999999988776655 3444 3222 34333 1233333333221 379999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+++.|.
T Consensus 83 i~~ag~ 88 (273)
T PRK07825 83 VNNAGV 88 (273)
T ss_pred EECCCc
Confidence 998874
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0016 Score=53.37 Aligned_cols=79 Identities=22% Similarity=0.366 Sum_probs=54.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC--cEE---eCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV--TEF---VNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~--~~v---i~~~~~~~~~~~~i~~~~~--~~ 140 (255)
+++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++. ... .|-.+ .....+.+.+... ++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTD-LAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence 5689999997 9999999999999999 999999988876655 44442 211 34333 1223333333221 37
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++++.|.
T Consensus 86 id~vI~nAG~ 95 (296)
T PRK05872 86 IDVVVANAGI 95 (296)
T ss_pred CCEEEECCCc
Confidence 9999999884
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0026 Score=49.85 Aligned_cols=105 Identities=25% Similarity=0.293 Sum_probs=75.6
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHhh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~~ 136 (255)
+....++.||++|+--|.|+ |-+++-||+..|. .+|+..+..++..+.++ ++|....+.... . .+.+.
T Consensus 86 I~~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~--~----Dv~~~ 158 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL--G----DVREG 158 (256)
T ss_pred HHHHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe--c----ccccc
Confidence 45778999999999888765 8888999988875 49999999988877774 345332121111 1 22222
Q ss_pred cCC-CccEEE-ecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 137 TDG-GVDYSF-ECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 137 ~~~-~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
..+ .||.+| |-...-..++.+.+.|+++ |.++.+..+
T Consensus 159 ~~~~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P~ 197 (256)
T COG2519 159 IDEEDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSPT 197 (256)
T ss_pred ccccccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcCC
Confidence 223 799887 7777777789999999997 999988553
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=52.63 Aligned_cols=83 Identities=27% Similarity=0.295 Sum_probs=54.6
Q ss_pred CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-C-C--c-EEeCCCCCCchHHHHHHhhcC--
Q 025257 67 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-G-V--T-EFVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 67 ~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g-~--~-~vi~~~~~~~~~~~~i~~~~~-- 138 (255)
...++.++||+|+ |.+|..+++.+...|+ +|++++++++..+.+.+. . . . ...|..+ +..+.+.+.+...
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVAD-PAQVERVFDTAVERF 84 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 3457789999998 9999999999999999 999999987766655332 2 1 1 1234333 1222222222211
Q ss_pred CCccEEEecCCcH
Q 025257 139 GGVDYSFECIGNV 151 (255)
Q Consensus 139 ~~~d~v~d~~g~~ 151 (255)
+++|.|+.+.|..
T Consensus 85 ~~~d~vi~~ag~~ 97 (264)
T PRK12829 85 GGLDVLVNNAGIA 97 (264)
T ss_pred CCCCEEEECCCCC
Confidence 2799999988753
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0023 Score=49.98 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=53.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE-EeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
++++|+|+ |.+|...++.+...|+ +|+.+++++++.+.++..+... ..|-.+ ...+.+.+.+..++++|+++.+.|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~d~vi~~ag 79 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVAD-PASVAGLAWKLDGEALDAAVYVAG 79 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCC-HHHHHHHHHHhcCCCCCEEEECCC
Confidence 46899997 9999999988888899 9999999888777776665432 234333 122333222333237999998877
Q ss_pred c
Q 025257 150 N 150 (255)
Q Consensus 150 ~ 150 (255)
.
T Consensus 80 ~ 80 (222)
T PRK06953 80 V 80 (222)
T ss_pred c
Confidence 5
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0018 Score=53.70 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=54.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----C-Cc---EEeCCCCCCchHHHHHHhhcCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----G-VT---EFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g-~~---~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
.|++++|+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. ++ + .. ...|-.+...+..+.+.+..++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 5789999998 8999999988888999 9999999988776552 21 1 11 1233332112334445554455
Q ss_pred -CccEEEecCCc
Q 025257 140 -GVDYSFECIGN 150 (255)
Q Consensus 140 -~~d~v~d~~g~ 150 (255)
++|++++++|.
T Consensus 131 ~didilVnnAG~ 142 (320)
T PLN02780 131 LDVGVLINNVGV 142 (320)
T ss_pred CCccEEEEecCc
Confidence 67799988763
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0016 Score=52.38 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-EE--eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT-EF--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. +.+.. .+ .|..+ +..+.+.+.+... +
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH-PEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 5789999997 8999999999999999 9999999887655442 22322 11 34333 1223222232211 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 87 ~id~vi~~Ag~ 97 (263)
T PRK07814 87 RLDIVVNNVGG 97 (263)
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00088 Score=50.07 Aligned_cols=100 Identities=23% Similarity=0.281 Sum_probs=64.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCC--------------CchHHHHHHhh
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDH--------------DKPIQQVLVDL 136 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~--------------~~~~~~~i~~~ 136 (255)
.+|+|+|+|.+|+.|+++++.+|+ +|+..+..+++.+..+..+...+ +.+.+. +......+.+.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 99 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF 99 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence 789999999999999999999999 99999999888888888776543 221110 12222223222
Q ss_pred cCCCccEEEecCC-----cHH-HHHHHHHHhccCCceEEEEccC
Q 025257 137 TDGGVDYSFECIG-----NVS-VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 137 ~~~~~d~v~d~~g-----~~~-~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.. .+|+++.+.- .|. ..+..++.++++ ..++.+..-
T Consensus 100 i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~D 141 (168)
T PF01262_consen 100 IA-PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISCD 141 (168)
T ss_dssp HH-H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTGG
T ss_pred Hh-hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEec
Confidence 11 4788885322 122 136777888885 788888553
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0031 Score=47.98 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=62.9
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHhhcCCC
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~~~~~~ 140 (255)
..++++.+||-.|+|+ |..+..+++.. +. +|++++.+++..+.++ +.+.+.+ .... .+..+ +.. .+.
T Consensus 41 ~~l~~g~~VLDiGcGt-G~~al~la~~~~~~-~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~~--~d~~~-~~~--~~~ 112 (187)
T PRK00107 41 PYLPGGERVLDVGSGA-GFPGIPLAIARPEL-KVTLVDSLGKKIAFLREVAAELGLKNV-TVVH--GRAEE-FGQ--EEK 112 (187)
T ss_pred hhcCCCCeEEEEcCCC-CHHHHHHHHHCCCC-eEEEEeCcHHHHHHHHHHHHHcCCCCE-EEEe--ccHhh-CCC--CCC
Confidence 3455689999999864 66666666655 45 9999999988776664 3454322 1111 22222 211 237
Q ss_pred ccEEEec-CCc-HHHHHHHHHHhccCCceEEEEc
Q 025257 141 VDYSFEC-IGN-VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 141 ~d~v~d~-~g~-~~~~~~~~~~l~~~~G~~v~~g 172 (255)
||+|+-. .+. +..++.+.+.++++ |+++.+-
T Consensus 113 fDlV~~~~~~~~~~~l~~~~~~LkpG-G~lv~~~ 145 (187)
T PRK00107 113 FDVVTSRAVASLSDLVELCLPLLKPG-GRFLALK 145 (187)
T ss_pred ccEEEEccccCHHHHHHHHHHhcCCC-eEEEEEe
Confidence 9999953 222 34477889999997 9988773
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0017 Score=52.11 Aligned_cols=78 Identities=21% Similarity=0.259 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCc--EE-eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVT--EF-VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~--~v-i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
++++++|+|+ |++|...++.+...|+ +|++++++.++.+.+++. +.. .+ .|..+ +....+.+.+... +.+|
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id 81 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS-LDDHKEAVARCVAAFGKID 81 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCC-HHHHHHHHHHHHHHhCCCC
Confidence 4689999997 8999999999999999 999999988777666543 321 11 23332 1223333333222 3689
Q ss_pred EEEecCC
Q 025257 143 YSFECIG 149 (255)
Q Consensus 143 ~v~d~~g 149 (255)
+++++.|
T Consensus 82 ~li~~Ag 88 (262)
T TIGR03325 82 CLIPNAG 88 (262)
T ss_pred EEEECCC
Confidence 9999886
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0022 Score=50.74 Aligned_cols=77 Identities=25% Similarity=0.360 Sum_probs=53.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
++.+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+. +.+...+ .|..+ ..-.+...+. .+++|++++
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~-~~~~d~vi~ 83 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGD--DAAIRAALAA-AGAFDGLVN 83 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCC--HHHHHHHHHH-hCCCCEEEE
Confidence 5679999998 8999999999999999 9999999887766553 3454332 34443 3322222221 136999999
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
+.|.
T Consensus 84 ~ag~ 87 (245)
T PRK07060 84 CAGI 87 (245)
T ss_pred CCCC
Confidence 8874
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0048 Score=47.81 Aligned_cols=109 Identities=22% Similarity=0.220 Sum_probs=72.3
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHhh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~~ 136 (255)
|....+.++.++||-+|.+ .|..++++|..+. -.+++.++.++++.+.++ +.|.+..+.-... .+..+.+.+.
T Consensus 51 L~~L~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~ 128 (219)
T COG4122 51 LRLLARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRL 128 (219)
T ss_pred HHHHHHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhc
Confidence 3455666788999999864 3777888888775 338999999999888875 4565432211110 1444555543
Q ss_pred cCCCccEEE-ecCCc--HHHHHHHHHHhccCCceEEEEcc
Q 025257 137 TDGGVDYSF-ECIGN--VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 137 ~~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
..+.||+|| |+--. +..++.+++.+++| |.++.=..
T Consensus 129 ~~~~fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~DNv 167 (219)
T COG4122 129 LDGSFDLVFIDADKADYPEYLERALPLLRPG-GLIVADNV 167 (219)
T ss_pred cCCCccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEEeec
Confidence 334899998 54432 44589999999996 77765443
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00063 Score=46.41 Aligned_cols=88 Identities=25% Similarity=0.283 Sum_probs=59.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
++.+|||.|+|.+|..-++.+...|+ +|++++... +..+ +--... . ..+. ..+ .++++|+-+++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~--~~i~~~-~----~~~~---~~l--~~~~lV~~at~ 69 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSE--GLIQLI-R----REFE---EDL--DGADLVFAATD 69 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHH--TSCEEE-E----SS-G---GGC--TTESEEEE-SS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhh--hHHHHH-h----hhHH---HHH--hhheEEEecCC
Confidence 46899999999999999999999999 999999765 2222 211121 1 2231 111 26999999999
Q ss_pred cHHHHHHHHHHhccCCceEEEEccC
Q 025257 150 NVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 150 ~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.+..-+.+....+.. |.++.+...
T Consensus 70 d~~~n~~i~~~a~~~-~i~vn~~D~ 93 (103)
T PF13241_consen 70 DPELNEAIYADARAR-GILVNVVDD 93 (103)
T ss_dssp -HHHHHHHHHHHHHT-TSEEEETT-
T ss_pred CHHHHHHHHHHHhhC-CEEEEECCC
Confidence 988566777777775 888887653
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0017 Score=51.79 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=53.0
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-cEE--eCCCCCCchHHHHHHhhc--C
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGV-TEF--VNPKDHDKPIQQVLVDLT--D 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v--i~~~~~~~~~~~~i~~~~--~ 138 (255)
..+++++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+ .+. ..+ .|..+ ++++.+.+.+.. .
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD-YQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHhc
Confidence 35689999997 9999999999999999 99999998877655422 121 112 23322 123333333221 1
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 368999998883
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=53.01 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=70.7
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE--EeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+|.|+|+|.+|.-++..|..+|+ +|.+.+.+.+|.+.+..+-..+ +.-... .++.+.+. ..|+++.++-
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st~--~~iee~v~-----~aDlvIgaVL 240 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYSTP--SNIEEAVK-----KADLVIGAVL 240 (371)
T ss_pred ccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcCH--HHHHHHhh-----hccEEEEEEE
Confidence 468888999999999999999999 9999999999998887644332 222222 56666555 4788887553
Q ss_pred c------HHHHHHHHHHhccCCceEEEEccC
Q 025257 150 N------VSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 150 ~------~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
- ....++.++.|+++ +.++.+..-
T Consensus 241 IpgakaPkLvt~e~vk~MkpG-sVivDVAiD 270 (371)
T COG0686 241 IPGAKAPKLVTREMVKQMKPG-SVIVDVAID 270 (371)
T ss_pred ecCCCCceehhHHHHHhcCCC-cEEEEEEEc
Confidence 2 22468889999997 999888653
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0019 Score=51.55 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc----EEeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT----EFVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~----~vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+++++||+|+ |++|...++.+...|+ +|+.++++++..+...+.... ...|..+ +..+.+.+.+... +++|
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~~d 91 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD-SQSVEAAVAAVISAFGRID 91 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4679999998 9999999999989999 999999887655544443211 1133332 1223322322211 2689
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++.+.|.
T Consensus 92 ~vi~~ag~ 99 (255)
T PRK06841 92 ILVNSAGV 99 (255)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.002 Score=51.77 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCC--cE-EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGV--TE-FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~--~~-vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+++++||+|+ +++|...++.+...|+ +|+++++++++.+.+.+ ++. .. ..|-.+ +....+.+.+... +.+|
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id 82 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTS-YADNQRAVDQTVDAFGKLD 82 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHhcCCCC
Confidence 4679999997 8999999999999999 99999998877766643 332 11 123332 1223333333221 3699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 83 ~li~~ag~ 90 (263)
T PRK06200 83 CFVGNAGI 90 (263)
T ss_pred EEEECCCC
Confidence 99998873
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.005 Score=48.44 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=76.9
Q ss_pred hhhhhhH-HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchH
Q 025257 55 VPTGLGA-VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPI 129 (255)
Q Consensus 55 ~~ta~~~-l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~ 129 (255)
.-..|.- +.....+.||++||=.|+|. |-.+..+++..|..+|++++.|+.-++.+++ .|... +..-. .+
T Consensus 35 ~~~~Wr~~~i~~~~~~~g~~vLDva~GT-Gd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~--~d- 109 (238)
T COG2226 35 LHRLWRRALISLLGIKPGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVV--GD- 109 (238)
T ss_pred chHHHHHHHHHhhCCCCCCEEEEecCCc-cHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEE--ec-
Confidence 3344443 44556677999999998874 9999999999986699999999987777744 33221 11110 11
Q ss_pred HHHHHhhcCCCccEEEecCC------cHHHHHHHHHHhccCCceEEEEccCC
Q 025257 130 QQVLVDLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 130 ~~~i~~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
.+.+. +.+..||+|.-+.| -+.++.+..|.++|+ |+++.+....
T Consensus 110 Ae~LP-f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~ 159 (238)
T COG2226 110 AENLP-FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSK 159 (238)
T ss_pred hhhCC-CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCC
Confidence 11221 22237899876555 244689999999997 9998887653
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.005 Score=45.88 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=63.1
Q ss_pred ccccccchhhhhhHHHhhcCCCCCCEEEEEcCCh-HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCC
Q 025257 48 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 126 (255)
Q Consensus 48 aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~-vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~ 126 (255)
....|+....+...+.+...--.+.+|+|.|+|. +|..++..++..|+ +|+++.++.
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~--------------------- 78 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT--------------------- 78 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc---------------------
Confidence 3445543333333332333335789999999986 59989999999999 888887642
Q ss_pred chHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 127 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 127 ~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++.+.+. .+|+||.+++.+..+.. ..++++ -.++.++..
T Consensus 79 ~~l~~~l~-----~aDiVIsat~~~~ii~~--~~~~~~-~viIDla~p 118 (168)
T cd01080 79 KNLKEHTK-----QADIVIVAVGKPGLVKG--DMVKPG-AVVIDVGIN 118 (168)
T ss_pred hhHHHHHh-----hCCEEEEcCCCCceecH--HHccCC-eEEEEccCC
Confidence 22333333 48999999998773322 356775 677777664
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0022 Score=51.98 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=53.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc---E-EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT---E-FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~---~-vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+.... . ..|..+ ++.+.+.+.+... +++|
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~~~d 80 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTD-FDAIDAVVADAEATFGPID 80 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence 3568999998 9999999999988999 999999988877666543211 1 123333 1223333333221 2689
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 81 ~vv~~ag~ 88 (277)
T PRK06180 81 VLVNNAGY 88 (277)
T ss_pred EEEECCCc
Confidence 99999885
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0029 Score=54.20 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
-++.+|+|.|+|.+|.+++..+...|+.+++++.|+.++.+.+ .+++...++.. .++.+.+. .+|+||.|
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~----~~l~~~l~-----~aDiVI~a 249 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYL----SELPQLIK-----KADIIIAA 249 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecH----HHHHHHhc-----cCCEEEEC
Confidence 4578999999999999999999999986899999998876666 44542222222 12222222 59999999
Q ss_pred CCcHH
Q 025257 148 IGNVS 152 (255)
Q Consensus 148 ~g~~~ 152 (255)
++.+.
T Consensus 250 T~a~~ 254 (414)
T PRK13940 250 VNVLE 254 (414)
T ss_pred cCCCC
Confidence 99877
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0014 Score=52.37 Aligned_cols=96 Identities=17% Similarity=0.013 Sum_probs=64.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCC-cEEeCCCCCCchHHHHHHhhcCCCccEEE-e
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGV-TEFVNPKDHDKPIQQVLVDLTDGGVDYSF-E 146 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~-~~vi~~~~~~~~~~~~i~~~~~~~~d~v~-d 146 (255)
.-++|||.|+|- |.++-+++|+- . +|+.++.+++-.+.+++ +.. ...++... -++...+.+...+.||+|+ |
T Consensus 72 ~pk~VLIiGGGD-Gg~~REvLkh~-~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR--v~l~~~~~~~~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFD-LELAHQLFKYD-T-HVDFVQADEKILDSFISFFPHFHEVKNNKN--FTHAKQLLDLDIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCc-hHHHHHHHCcC-C-eeEEEECCHHHHHHHHHHCHHHHHhhcCCC--EEEeehhhhccCCcCCEEEEc
Confidence 348999998865 66778888886 3 99999999988888887 321 11222221 2222233333334799998 7
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEE
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+.-.+.-++.+.++|+++ |.++.=
T Consensus 147 s~~~~~fy~~~~~~L~~~-Gi~v~Q 170 (262)
T PRK00536 147 QEPDIHKIDGLKRMLKED-GVFISV 170 (262)
T ss_pred CCCChHHHHHHHHhcCCC-cEEEEC
Confidence 565666478899999997 887754
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0028 Score=50.79 Aligned_cols=81 Identities=22% Similarity=0.355 Sum_probs=53.0
Q ss_pred CCCCCEEEEEcC-C-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----cCCcEE----eCCCCCCchHHHHHHhh
Q 025257 68 VEPGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----FGVTEF----VNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 68 ~~~~~~vlI~G~-g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----~g~~~v----i~~~~~~~~~~~~i~~~ 136 (255)
+.++++++|+|+ | ++|.++++.+...|+ +|+++++++++.+...+ .+...+ .|..+ +..+.+.+.+.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~ 91 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS-EAQVDALIDAA 91 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC-HHHHHHHHHHH
Confidence 445789999997 6 799999999999999 89999988766554422 343222 24333 12233323222
Q ss_pred c--CCCccEEEecCCc
Q 025257 137 T--DGGVDYSFECIGN 150 (255)
Q Consensus 137 ~--~~~~d~v~d~~g~ 150 (255)
. .+.+|+++++.|.
T Consensus 92 ~~~~g~id~li~~ag~ 107 (262)
T PRK07831 92 VERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1 1378999999984
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0021 Score=51.06 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC--Cc--E-EeCCCCCCchHHHHHHhhc--CCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG--VT--E-FVNPKDHDKPIQQVLVDLT--DGG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g--~~--~-vi~~~~~~~~~~~~i~~~~--~~~ 140 (255)
++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ .++. .. . ..|..+ +..+...+.+.. .+.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD-EADVEAAVAAALERFGS 81 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence 4578999998 9999999998889999 899999998776554 2222 11 1 123332 123333333221 126
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++.+.|.
T Consensus 82 ~d~vi~~ag~ 91 (251)
T PRK07231 82 VDILVNNAGT 91 (251)
T ss_pred CCEEEECCCC
Confidence 9999998874
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.003 Score=50.77 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----CCc--E-EeCCCCCCchHHHHHHhhcC-C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----GVT--E-FVNPKDHDKPIQQVLVDLTD-G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g~~--~-vi~~~~~~~~~~~~i~~~~~-~ 139 (255)
+++++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. ++ +.. . ..|-.+ +....+.+.+... +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK-REDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHHHhhC
Confidence 4688999997 8999999999999999 9999999877765542 21 321 1 223333 1233333333221 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 85 ~iD~lv~nag~ 95 (263)
T PRK08339 85 EPDIFFFSTGG 95 (263)
T ss_pred CCcEEEECCCC
Confidence 79999998874
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00079 Score=58.59 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=63.6
Q ss_pred hhcCCCCCCEEE----EEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-EEeCCCCCCchHHHHHHhhc
Q 025257 64 NTAKVEPGSIVA----VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 64 ~~~~~~~~~~vl----I~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~i~~~~ 137 (255)
...++++++++| |+|+ |++|.+++|+++..|+ +|+++...+.+....+..+.+ .++|... ..+.+.+....
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~l~~~~ 103 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG--ITDPADLKALY 103 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC--CCCHHHHHHHH
Confidence 456778888888 8875 9999999999999999 999988766644443444444 3555554 33444443221
Q ss_pred CCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCC
Q 025257 138 DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
. .+...++.+.++ |+++.++...
T Consensus 104 -------------~-~~~~~l~~l~~~-griv~i~s~~ 126 (450)
T PRK08261 104 -------------E-FFHPVLRSLAPC-GRVVVLGRPP 126 (450)
T ss_pred -------------H-HHHHHHHhccCC-CEEEEEcccc
Confidence 1 256667777886 8888887643
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0027 Score=50.39 Aligned_cols=79 Identities=25% Similarity=0.342 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE-E--eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
++.+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+ ++++... . .|..+ ..+....+..... +++|
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id 82 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGD-VAAQKALAQALAEAFGRLD 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4679999998 9999999999999999 999999887665554 4455432 1 23322 1222222222211 3699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 83 ~vi~~ag~ 90 (249)
T PRK06500 83 AVFINAGV 90 (249)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0025 Score=50.85 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=50.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--E-EeCCCCCCchHHHHHHhhcCCCcc
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT--E-FVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~-vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
+.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+++ .+.. . ..|..+ . +.+.+...+++|
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~---~~~~~~~~~~id 75 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD--A---IDRAQAAEWDVD 75 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC--H---HHHHHHhcCCCC
Confidence 458999998 9999999999999999 99999988766555432 2322 1 123332 2 223333233799
Q ss_pred EEEecCC
Q 025257 143 YSFECIG 149 (255)
Q Consensus 143 ~v~d~~g 149 (255)
+++++.|
T Consensus 76 ~vi~~ag 82 (257)
T PRK09291 76 VLLNNAG 82 (257)
T ss_pred EEEECCC
Confidence 9999887
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0058 Score=54.24 Aligned_cols=103 Identities=26% Similarity=0.361 Sum_probs=68.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ +++|...++.+...|+ +|+++++++++.+.+.+ .+... ..|..+ ++.+.+.+.+... +.+|
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id 345 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITD-EAAVESAFAQIQARWGRLD 345 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 5689999997 8999999999999999 99999998877776643 44321 234333 1233333333221 3699
Q ss_pred EEEecCCcHH--------------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 143 YSFECIGNVS--------------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 143 ~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+++++.|... ..+.++..++.+ |+++.++...
T Consensus 346 ~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~~ 403 (520)
T PRK06484 346 VLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSIA 403 (520)
T ss_pred EEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECchh
Confidence 9999887420 133444556665 8999887653
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0026 Score=50.75 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc---EEeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT---EFVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ..+.. ...|..+ +..+.+.+.+... +
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ-HQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 4689999998 8999999999999999 9999999887665542 22321 1233333 1233333333221 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++++.|.
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0032 Score=49.99 Aligned_cols=79 Identities=25% Similarity=0.334 Sum_probs=50.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC--cE-EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV--TE-FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~--~~-vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
.+.+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+. +.+. .. ..|-.+ ...+.+.+.+... +
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD-PDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence 4578999998 9999999998888999 9999998876554432 2222 11 233332 1222222222211 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|++|.+.|.
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 69999998884
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0037 Score=50.15 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc--C--CcEE-eCCCCCCchHHHHHHhhc-CCCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF--G--VTEF-VNPKDHDKPIQQVLVDLT-DGGV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~--g--~~~v-i~~~~~~~~~~~~i~~~~-~~~~ 141 (255)
++.++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++ + ...+ .|-.+ +..+.+.+.... .+.+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS-EAGREAVLARAREMGGI 81 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHhcCCC
Confidence 4678999997 9999999998889999 9999999887765553 22 2 1111 23322 122222222211 2378
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|.++.+.|.
T Consensus 82 d~lv~~ag~ 90 (263)
T PRK09072 82 NVLINNAGV 90 (263)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0035 Score=51.31 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-EE--eCCCCCCchHHHHHHhhc--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT-EF--VNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~i~~~~--~~ 139 (255)
.+.+++|+|+ |++|.+.++.+...|+ +|++++++.++.+.+. +.+.. .. .|-.+ ++.+.+.+.... -+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD-LDAVDALVADVEKRIG 116 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 3578999997 9999999998888999 9999999887765542 22322 11 23332 122322233221 13
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++++.|.
T Consensus 117 ~id~li~~AG~ 127 (293)
T PRK05866 117 GVDILINNAGR 127 (293)
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0046 Score=50.12 Aligned_cols=140 Identities=24% Similarity=0.333 Sum_probs=79.9
Q ss_pred ceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 025257 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 103 (255)
Q Consensus 24 ~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~ 103 (255)
+|.+|..-....+.++.+++.+- ......|++..=.....++++.+||=.|+|+ |.+++-.++ +|+.+|++++.
T Consensus 120 sw~~~~~~~~~~~i~lDPGlAFG----TG~HpTT~lcL~~Le~~~~~g~~vlDvGcGS-GILaIAa~k-LGA~~v~g~Di 193 (300)
T COG2264 120 SWREYPEPSDELNIELDPGLAFG----TGTHPTTSLCLEALEKLLKKGKTVLDVGCGS-GILAIAAAK-LGAKKVVGVDI 193 (300)
T ss_pred CCccCCCCCCceEEEEccccccC----CCCChhHHHHHHHHHHhhcCCCEEEEecCCh-hHHHHHHHH-cCCceEEEecC
Confidence 45544322234456666665442 2223344443211223466999999999864 666665554 78868999999
Q ss_pred CcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH---HHHHHHHHhccCCceEEEEccCC
Q 025257 104 DPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS---VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 104 ~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~---~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
++-..+.+++ .+.+..+.... .+..+ ...++.||+|+-+.=... ..+...+.++++ |++++-|...
T Consensus 194 Dp~AV~aa~eNa~~N~v~~~~~~~~--~~~~~---~~~~~~~DvIVANILA~vl~~La~~~~~~lkpg-g~lIlSGIl~ 266 (300)
T COG2264 194 DPQAVEAARENARLNGVELLVQAKG--FLLLE---VPENGPFDVIVANILAEVLVELAPDIKRLLKPG-GRLILSGILE 266 (300)
T ss_pred CHHHHHHHHHHHHHcCCchhhhccc--ccchh---hcccCcccEEEehhhHHHHHHHHHHHHHHcCCC-ceEEEEeehH
Confidence 8876666543 33332110000 11111 111237999996554322 256778899997 9999998764
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0039 Score=51.56 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC-CcE-EeCCCCCCchHHHHHHhhcC--CCccE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG-VTE-FVNPKDHDKPIQQVLVDLTD--GGVDY 143 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g-~~~-vi~~~~~~~~~~~~i~~~~~--~~~d~ 143 (255)
.+.+++|+|+ |++|.++++.+...|+ +|+++++++++.+.+ .++. ... ..|-.+ ...+.+.+.+... +++|+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d-~~~v~~~~~~~~~~~~~iD~ 102 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLAD-LESVRAFAERFLDSGRRIDI 102 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC-HHHHHHHHHHHHhcCCCCCE
Confidence 4679999998 9999999998888999 999999988766554 2222 221 123333 1223333333222 37999
Q ss_pred EEecCCc
Q 025257 144 SFECIGN 150 (255)
Q Consensus 144 v~d~~g~ 150 (255)
++++.|.
T Consensus 103 li~nAg~ 109 (315)
T PRK06196 103 LINNAGV 109 (315)
T ss_pred EEECCCC
Confidence 9998873
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0038 Score=51.72 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=62.1
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+|+|+|+ |-+|..+++.+...|. +|++++|+.++...+...+++.+. |..+ +..+.+.++ ++|+|+++++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d-~~~l~~al~-----g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSL-PETLPPSFK-----GVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCC-HHHHHHHHC-----CCCEEEECCCC
Confidence 6999998 9999999999989999 999999987766655556665442 3222 122333332 58999998653
Q ss_pred HH------------HHHHHHHHhccCC-ceEEEEccC
Q 025257 151 VS------------VMRAALECCHKGW-GTSVIVGVA 174 (255)
Q Consensus 151 ~~------------~~~~~~~~l~~~~-G~~v~~g~~ 174 (255)
.. ....+++.++..+ .+++.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 11 1134455555431 378887764
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0051 Score=48.59 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc--E-EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT--E-FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~--~-vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
..++++|+|+ |.+|..++..+...|. +|+++++++++.+.+. +.+.. . ..|-.+ .+.+...+.+... +
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSN-PEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4578999997 9999999999999999 9999999887655442 22221 1 123332 1333333333221 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|.++.+.|.
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 69999998884
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0037 Score=49.95 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---cCCc--E-EeCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN---FGVT--E-FVNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~---~g~~--~-vi~~~~~~~~~~~~i~~~~~--~~ 140 (255)
++.++||+|+ |++|...++.+...|+ +|+++++++++.+..++ .+.. . ..|..+ ++.+...+.+... ++
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 83 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD-DAQCRDAVEQTVAKFGR 83 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhcCC
Confidence 4679999997 8999999988888999 99999988776544433 3422 1 123332 1223333333221 37
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++.+.|.
T Consensus 84 id~vi~~ag~ 93 (258)
T PRK08628 84 IDGLVNNAGV 93 (258)
T ss_pred CCEEEECCcc
Confidence 9999999883
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0038 Score=49.78 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE-E--eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
++++++|+|+ |++|...++.+...|+ +|+.+++++++.+.+. +.+... . .|..+ +....+.+.+... +
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD-EAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence 4678999997 8999999999999999 9999999887765542 233221 1 23332 1222222332221 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++++.|.
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 69999998874
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0052 Score=45.80 Aligned_cols=93 Identities=19% Similarity=0.293 Sum_probs=63.3
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC--cEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV--TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+|.|+|+ |-+|...++=++.+|. .|++++|++.|....+..-+ ..+++. ..+.+.+. ++|+|+++.+
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~----~~~a~~l~-----g~DaVIsA~~ 71 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDL----TSLASDLA-----GHDAVISAFG 71 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccCh----hhhHhhhc-----CCceEEEecc
Confidence 5788888 9999999999999999 99999999988766422211 113322 11222222 7999999988
Q ss_pred cHH---------HHHHHHHHhccC-CceEEEEccCC
Q 025257 150 NVS---------VMRAALECCHKG-WGTSVIVGVAA 175 (255)
Q Consensus 150 ~~~---------~~~~~~~~l~~~-~G~~v~~g~~~ 175 (255)
... ..+.++..++.. --|+..+|..+
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 641 244567777762 24888888764
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0025 Score=49.00 Aligned_cols=101 Identities=19% Similarity=0.286 Sum_probs=62.7
Q ss_pred HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhcC
Q 025257 63 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 63 ~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~~ 138 (255)
.......++.+||-.|+|. |..+..+++. |. +|++++.+++-.+.+++ .+...+ .... .++.+ . .. .
T Consensus 23 ~~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~--~d~~~-~-~~-~ 93 (197)
T PRK11207 23 LEAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDNL-HTAV--VDLNN-L-TF-D 93 (197)
T ss_pred HHhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEe--cChhh-C-Cc-C
Confidence 3444566778999999875 7777788774 88 99999999887666643 232211 1110 11111 0 11 2
Q ss_pred CCccEEEecCC----c----HHHHHHHHHHhccCCceEEEEcc
Q 025257 139 GGVDYSFECIG----N----VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 139 ~~~d~v~d~~g----~----~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.||+|+.+.. . +..+..+.+.|+++ |.++.+..
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~~~ 135 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIVAA 135 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEEE
Confidence 36999986433 1 23467788889997 98655433
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0052 Score=48.50 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcEE---eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~~--~ 139 (255)
++.++||+|+ |.+|...++.+...|. +|+++++++++.+.+ ++.+.... .|..+ +..+.+.+.+... +
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD-EAAVRALIEAAVEAFG 81 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 3578999998 9999999999888999 899999988765443 33343221 24333 1233333333221 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|.++.++|.
T Consensus 82 ~id~vi~~ag~ 92 (246)
T PRK05653 82 ALDILVNNAGI 92 (246)
T ss_pred CCCEEEECCCc
Confidence 68999998864
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0019 Score=50.39 Aligned_cols=103 Identities=19% Similarity=0.236 Sum_probs=65.9
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHhh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~~ 136 (255)
+.+...++++++||-.|+|. |..++.+++..+. .+|++++.+++-.+.++ +.|.+.+.-.. .+..+...
T Consensus 69 ~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~---~d~~~~~~-- 142 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIV---GDGTQGWE-- 142 (215)
T ss_pred HHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEE---CCcccCCc--
Confidence 45667889999999999874 7777777776653 26999999988776664 34543221001 11111110
Q ss_pred cCCCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 137 TDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 137 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
..+.||+|+-....+...+...+.|+++ |+++..
T Consensus 143 ~~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~ 176 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP 176 (215)
T ss_pred ccCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence 1127999985544444467788999997 998764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0045 Score=49.52 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=51.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cC----CcE-EeCCCCCCchHHHHHHhhcC--CCc
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FG----VTE-FVNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g----~~~-vi~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
+.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+.+ +. ... ..|-.+ ++.+.+.+.+... +.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRD-ADALAAAAADFIAAHGLP 79 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC-HHHHHHHHHHHHHhCCCC
Confidence 368999997 9999999998888999 99999998877665432 21 111 123332 1233333333222 258
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++++.|.
T Consensus 80 d~lv~~ag~ 88 (257)
T PRK07024 80 DVVIANAGI 88 (257)
T ss_pred CEEEECCCc
Confidence 999998773
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0044 Score=49.48 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=52.5
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc---CCc---EEeCCCCCCchHHHHHHhhcC--
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF---GVT---EFVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~---g~~---~vi~~~~~~~~~~~~i~~~~~-- 138 (255)
.++.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+. ++ +.. ...|..+ ++.+...+.+...
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD-EDQCANLVALALERF 80 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC-HHHHHHHHHHHHHHc
Confidence 35688999997 9999999999999999 9999999887655542 22 321 1233332 1233333333221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+.+|+++.+.|.
T Consensus 81 g~~d~vi~~ag~ 92 (258)
T PRK07890 81 GRVDALVNNAFR 92 (258)
T ss_pred CCccEEEECCcc
Confidence 368999998874
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0041 Score=49.40 Aligned_cols=78 Identities=21% Similarity=0.372 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
+++++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ +..+... ..|-.+ +....+.+..... +
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD-EEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999999999999 999999887665544 2234321 223222 1233333333322 2
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|.++++.|
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6899999887
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0093 Score=49.03 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--EEeCCCCC---CchHHHHHHhhcCCCcc
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EFVNPKDH---DKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~---~~~~~~~i~~~~~~~~d 142 (255)
..+.++|||.|+|. |..+..++++.+..+|++++.+++-.+.+++.-.. ..++.... ..+-.+.+++..++.||
T Consensus 89 ~~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 34568999999875 66777888876665899999988877777663110 00100000 02222233333234799
Q ss_pred EEE-ecCCc---------HHHHHHHHHHhccCCceEEEE
Q 025257 143 YSF-ECIGN---------VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 143 ~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+|+ |+... ..-++.+.+.|+++ |.++.-
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEC
Confidence 998 44321 12377888999997 998654
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0055 Score=48.61 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=50.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhcCCc--E-EeCCCCCCchHHHHHHhhcC--CCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK--FDRAKNFGVT--E-FVNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~--~~~~~~~g~~--~-vi~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
+++++||+|+ |++|...++.+...|+ +|+++++++.. .+.+++.+.. . ..|..+ +..+...+.+... +++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~ 81 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSD-IEAIKALVDSAVEEFGHI 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHcCCC
Confidence 4689999998 8999999998889999 99999986521 2233444432 1 123332 2333333333322 269
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++++.|.
T Consensus 82 d~li~~ag~ 90 (248)
T TIGR01832 82 DILVNNAGI 90 (248)
T ss_pred CEEEECCCC
Confidence 999998874
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0078 Score=49.65 Aligned_cols=91 Identities=21% Similarity=0.368 Sum_probs=62.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
.+|.|+|+|.+|...++.++..|. .+|++.++++++.+.+++.|....+. .+..+.+ ..+|+|+.|+..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~-----~~~~~~~-----~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT-----TSAAEAV-----KGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec-----CCHHHHh-----cCCCEEEECCCH
Confidence 579999999999999999888884 38999999998888888887532111 1222222 158999999986
Q ss_pred HHH---HHHHHHHhccCCceEEEEcc
Q 025257 151 VSV---MRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 151 ~~~---~~~~~~~l~~~~G~~v~~g~ 173 (255)
... ++.....++++ ..++.+|.
T Consensus 77 ~~~~~v~~~l~~~l~~~-~iv~dvgs 101 (307)
T PRK07502 77 GASGAVAAEIAPHLKPG-AIVTDVGS 101 (307)
T ss_pred HHHHHHHHHHHhhCCCC-CEEEeCcc
Confidence 541 23333455664 66666655
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0066 Score=46.81 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=31.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
.+.+|+|.|+|++|..+++.+...|+.+++.++.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 44789999999999999999999999889999876
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0037 Score=50.20 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hc--CCc---EEeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NF--GVT---EFVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~--g~~---~vi~~~~~~~~~~~~i~~~~~- 138 (255)
++++++|+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +. +.. ...|-.+ ++...+.+.+...
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLD-EADVAAFAAAVEAR 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC-HHHHHHHHHHHHHh
Confidence 4689999998 8999999999999999 9999999887665442 11 111 1124333 1223222332221
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 85 ~g~id~li~~Ag~ 97 (265)
T PRK07062 85 FGGVDMLVNNAGQ 97 (265)
T ss_pred cCCCCEEEECCCC
Confidence 369999999884
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0071 Score=47.65 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=51.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEEE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYSF 145 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v~ 145 (255)
++++||+|+ |++|...++.+...|+ +|+++++++++ .+.+++.++..+ .|..+ +....+.+.+... +++|+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~lv 79 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFST-NAGIMAFIDELKQHTDGLRAII 79 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCC-HHHHHHHHHHHHhhCCCccEEE
Confidence 468999997 8999999999989999 99999987654 333444554322 23332 1233333333322 2699999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 80 ~~ag~ 84 (236)
T PRK06483 80 HNASD 84 (236)
T ss_pred ECCcc
Confidence 98874
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0076 Score=48.19 Aligned_cols=82 Identities=23% Similarity=0.290 Sum_probs=51.2
Q ss_pred CCCCCCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCCcch-HHH----HHhcCC-c-EE--eCCCCCCchHHHHHHh
Q 025257 67 KVEPGSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKK-FDR----AKNFGV-T-EF--VNPKDHDKPIQQVLVD 135 (255)
Q Consensus 67 ~~~~~~~vlI~G~-g~vG~~a~~l~~~~g-~~~v~~~~~~~~~-~~~----~~~~g~-~-~v--i~~~~~~~~~~~~i~~ 135 (255)
.+..+.+|||+|+ |++|...++-+...| + +|+++++++++ .+. +++.+. . ++ .|..+ +....+.+++
T Consensus 4 ~~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~-~~~~~~~~~~ 81 (253)
T PRK07904 4 AVGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD-TDSHPKVIDA 81 (253)
T ss_pred ccCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC-hHHHHHHHHH
Confidence 3456789999998 999999998777674 8 99999998775 333 233332 1 12 34332 1233333333
Q ss_pred hcC-CCccEEEecCCc
Q 025257 136 LTD-GGVDYSFECIGN 150 (255)
Q Consensus 136 ~~~-~~~d~v~d~~g~ 150 (255)
... +++|+++.+.|.
T Consensus 82 ~~~~g~id~li~~ag~ 97 (253)
T PRK07904 82 AFAGGDVDVAIVAFGL 97 (253)
T ss_pred HHhcCCCCEEEEeeec
Confidence 222 379998877764
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=48.58 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=61.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--H----HHHHhcCCcEE---eCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK--F----DRAKNFGVTEF---VNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~--~----~~~~~~g~~~v---i~~~~~~~~~~~~i~~~~~- 138 (255)
.++++||+|+ |++|.++++.+...|+ +|+.+.++.+. . +.+++.|.... .|-.+ .....+.+.+...
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD-EAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHHHHH
Confidence 4689999997 9999999999999999 88887654332 1 12233443221 23332 1222222332221
Q ss_pred -CCccEEEecCCcHH--------------------------HHHHHHHHhccCCceEEEEccC
Q 025257 139 -GGVDYSFECIGNVS--------------------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 139 -~~~d~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++|+++++.|... ..+.+++.+..+ |+++.++..
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~iv~~sS~ 193 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPG-ASIINTGSI 193 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcC-CEEEEECCc
Confidence 36999999887310 123444455665 898888664
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0051 Score=50.06 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC------C---c--EEeCCCCCCchHHHHHHhhc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG------V---T--EFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g------~---~--~vi~~~~~~~~~~~~i~~~~ 137 (255)
...++||++|+|. |..+..++++.+..+|++++.+++-.+.+++.- . . .++. .+..+.+.+ +
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~-----~Da~~~l~~-~ 147 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI-----GDGIKFVAE-T 147 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE-----CchHHHHhh-C
Confidence 3457999999875 777778888767669999999998888876521 1 1 1111 222333333 3
Q ss_pred CCCccEEEe-cCCc---------HHHHHHHHHHhccCCceEEEE
Q 025257 138 DGGVDYSFE-CIGN---------VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 138 ~~~~d~v~d-~~g~---------~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.+.||+|+- +... ..-++.+.+.|+++ |.++.-
T Consensus 148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~ 190 (283)
T PRK00811 148 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQ 190 (283)
T ss_pred CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence 347999984 3211 22256778899997 988865
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0064 Score=47.62 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=49.9
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+++|+|+ |++|.+.++.+...|+ +|+.+++++++.+.+ ++.+...+ .|-.+ +..+.+.+.+.. +.+|+++++.|
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~-~~id~lv~~ag 78 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTD-PASLEEARGLFP-HHLDTIVNVPA 78 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCC-HHHHHHHHHHHh-hcCcEEEECCC
Confidence 5899987 9999999999988999 999999988776655 34444332 34333 122333333332 25899998765
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.018 Score=42.73 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=59.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+|-++|.|.+|...++-+...|. +|.+.++++++.+.+.+.|+... .+..+.+. ..|+|+-|+....
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~-------~s~~e~~~-----~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVA-------DSPAEAAE-----QADVVILCVPDDD 69 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEE-------SSHHHHHH-----HBSEEEE-SSSHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhh-------hhhhhHhh-----cccceEeecccch
Confidence 68889999999999999999999 99999999999999988885432 23333343 3689998888755
Q ss_pred HHHHHHH------HhccCCceEEEEccC
Q 025257 153 VMRAALE------CCHKGWGTSVIVGVA 174 (255)
Q Consensus 153 ~~~~~~~------~l~~~~G~~v~~g~~ 174 (255)
..+..+. .+.++ ..++.++..
T Consensus 70 ~v~~v~~~~~i~~~l~~g-~iiid~sT~ 96 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPG-KIIIDMSTI 96 (163)
T ss_dssp HHHHHHHCTTHGGGS-TT-EEEEE-SS-
T ss_pred hhhhhhhhhHHhhccccc-eEEEecCCc
Confidence 4555443 34453 566655543
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0019 Score=51.10 Aligned_cols=107 Identities=20% Similarity=0.317 Sum_probs=67.5
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----hcCCc-EE-eCCCC-CCchHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAK----NFGVT-EF-VNPKD-HDKPIQQVL 133 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~----~~g~~-~v-i~~~~-~~~~~~~~i 133 (255)
+....+++||++|+--|.|+ |.+...+++..|. .+|+..+.++++.+.++ ..|.. .+ +..++ +...+.+.+
T Consensus 32 I~~~l~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHTT--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHcCCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 55778999999999988654 6677778877763 39999999998887774 35543 22 21221 011221111
Q ss_pred HhhcCCCccEEE-ecCCcHHHHHHHHHHh-ccCCceEEEEccC
Q 025257 134 VDLTDGGVDYSF-ECIGNVSVMRAALECC-HKGWGTSVIVGVA 174 (255)
Q Consensus 134 ~~~~~~~~d~v~-d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~ 174 (255)
.+.+|.|| |-...-..++.+.+.| +++ |+++.+...
T Consensus 111 ----~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP~ 148 (247)
T PF08704_consen 111 ----ESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSPC 148 (247)
T ss_dssp ----TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEESS
T ss_pred ----cCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECCC
Confidence 12689887 7666655689999999 896 999988553
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.065 Score=41.43 Aligned_cols=93 Identities=20% Similarity=0.182 Sum_probs=61.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
.|.+|||.|+|.+|..-++.+...|+ +|++++.... ..+.+.+.|--..+. .+ .. .+.+ .++++|+-++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~~-~~--~~-~~dl-----~~~~lVi~at 77 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWLA-RC--FD-ADIL-----EGAFLVIAAT 77 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEEe-CC--CC-HHHh-----CCcEEEEECC
Confidence 46799999999999999999999999 9999986543 233333333212222 11 11 1111 2699999999
Q ss_pred CcHHHHHHHHHHhccCCceEEEEcc
Q 025257 149 GNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.+..-..+....+.. |..+.+..
T Consensus 78 ~d~~ln~~i~~~a~~~-~ilvn~~d 101 (205)
T TIGR01470 78 DDEELNRRVAHAARAR-GVPVNVVD 101 (205)
T ss_pred CCHHHHHHHHHHHHHc-CCEEEECC
Confidence 9986455666677775 77775543
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.003 Score=50.86 Aligned_cols=76 Identities=26% Similarity=0.383 Sum_probs=50.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEEEe
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYSFE 146 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v~d 146 (255)
+++++|+|+ |++|...++.+...|+ +|+++++++++.+.. .+...+ .|..+ ++.+.+.+.+... +.+|++++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~--~~~~~~~~D~~d-~~~~~~~~~~~~~~~g~~d~li~ 79 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPI--PGVELLELDVTD-DASVQAAVDEVIARAGRIDVLVN 79 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccc--CCCeeEEeecCC-HHHHHHHHHHHHHhCCCCCEEEE
Confidence 468999997 9999999998888999 999999876654332 223222 23333 2334443433322 26999999
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
+.|.
T Consensus 80 ~ag~ 83 (270)
T PRK06179 80 NAGV 83 (270)
T ss_pred CCCC
Confidence 9884
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0033 Score=50.80 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=39.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~ 113 (255)
++++++|.|+|+.+.+++.-++..|+.+++++.|+.+|.+.+.+
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 57899999999999999999999998799999999998877754
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.019 Score=45.05 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=63.4
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-EEeCCCCCCchHHHHHHhhcC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~i~~~~~ 138 (255)
....++++++||-.|+|. |..+..+++. ++.+|++++.+++..+.+++ .+.. .+++ .++.+.+ ..
T Consensus 30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~-----~d~~~~~---~~ 99 (223)
T PRK14967 30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR-----GDWARAV---EF 99 (223)
T ss_pred HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE-----Cchhhhc---cC
Confidence 445678899999999986 8888888775 54599999999887776543 3432 1222 2232221 12
Q ss_pred CCccEEEecCCc---------------------------HHHHHHHHHHhccCCceEEEE
Q 025257 139 GGVDYSFECIGN---------------------------VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 139 ~~~d~v~d~~g~---------------------------~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+.||+|+....- ...++.+.+.|+++ |+++.+
T Consensus 100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~ 158 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLV 158 (223)
T ss_pred CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEE
Confidence 379999864210 11245678899997 998865
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.021 Score=43.72 Aligned_cols=103 Identities=23% Similarity=0.344 Sum_probs=64.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLV 134 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~ 134 (255)
+.....++++++||-.|+|. |..++.+++.. +. +|++++.+++..+.+++ .+... ++. .+..+.+.
T Consensus 32 l~~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~-~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~-----~d~~~~~~ 104 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKG-RVIAIERDEEVVNLIRRNCDRFGVKNVEVIE-----GSAPECLA 104 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE-----CchHHHHh
Confidence 44666788999999998764 55666666654 45 99999999988777643 45432 222 22222222
Q ss_pred hhcCCCccEE-EecCCc-HHHHHHHHHHhccCCceEEEEcc
Q 025257 135 DLTDGGVDYS-FECIGN-VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 135 ~~~~~~~d~v-~d~~g~-~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
... ..+|.+ ++.... ...++.+.+.|+++ |+++....
T Consensus 105 ~~~-~~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~ 143 (196)
T PRK07402 105 QLA-PAPDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATAS 143 (196)
T ss_pred hCC-CCCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEee
Confidence 221 124444 443222 34578889999997 99887744
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0046 Score=54.08 Aligned_cols=78 Identities=31% Similarity=0.404 Sum_probs=55.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc---------------------chHHHHHhcCCcEEeCCCCCCch
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP---------------------KKFDRAKNFGVTEFVNPKDHDKP 128 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~---------------------~~~~~~~~~g~~~vi~~~~~~~~ 128 (255)
++++|+|.|+|+.|+.++..++..|. +|++++..+ ...+.++++|++..++..-. .+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~-~~ 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG-RD 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeC-Cc
Confidence 57899999999999999999999999 899887654 23566778898766654320 11
Q ss_pred HHHHHHhhcCCCccEEEecCCcHH
Q 025257 129 IQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 129 ~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+ .+.+.. ..+|.||.++|...
T Consensus 218 ~--~~~~~~-~~~D~vilAtGa~~ 238 (467)
T TIGR01318 218 I--SLDDLL-EDYDAVFLGVGTYR 238 (467)
T ss_pred c--CHHHHH-hcCCEEEEEeCCCC
Confidence 1 111111 16999999999743
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.015 Score=46.66 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=60.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc-------------------hH----HHHHhcCCc-EEeCCCCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-------------------KF----DRAKNFGVT-EFVNPKDH 125 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~-------------------~~----~~~~~~g~~-~vi~~~~~ 125 (255)
.+.+|+|.|+|++|..++..+...|..+++.++.+.- |. +.++++... .+....+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~- 107 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD- 107 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec-
Confidence 4578999999999999999999999878988885421 11 111223321 1211111
Q ss_pred CchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCC
Q 025257 126 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 126 ~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
.-..+.+.++....+|+|+||.+....-..+.+.+...+-.++..|...
T Consensus 108 -~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag 156 (268)
T PRK15116 108 -FITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG 156 (268)
T ss_pred -ccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 0001122222223699999999985534445555554314666666543
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.023 Score=37.97 Aligned_cols=85 Identities=22% Similarity=0.330 Sum_probs=57.7
Q ss_pred EEEEEcCChHHHHHHHHHHHcC---CCeEEEE-cCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAG---ASRVIGI-DIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g---~~~v~~~-~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
+|.|+|+|.+|.+.++-+...| . +|+.+ .+++++.+.+ ++.+..... .+..+.++ ..|+||-|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~-----~advvila 68 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQATA------DDNEEAAQ-----EADVVILA 68 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTEEES------EEHHHHHH-----HTSEEEE-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcccccc------CChHHhhc-----cCCEEEEE
Confidence 4678899999999999999998 6 88855 9999988887 556644321 23444444 37999999
Q ss_pred CCcHHHHHHHHHHh---ccCCceEEEE
Q 025257 148 IGNVSVMRAALECC---HKGWGTSVIV 171 (255)
Q Consensus 148 ~g~~~~~~~~~~~l---~~~~G~~v~~ 171 (255)
+.... +...++.+ .++ ..++.+
T Consensus 69 v~p~~-~~~v~~~i~~~~~~-~~vis~ 93 (96)
T PF03807_consen 69 VKPQQ-LPEVLSEIPHLLKG-KLVISI 93 (96)
T ss_dssp S-GGG-HHHHHHHHHHHHTT-SEEEEE
T ss_pred ECHHH-HHHHHHHHhhccCC-CEEEEe
Confidence 98877 66665554 343 455544
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.006 Score=49.02 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch----HHHHHhcC-Cc-EEeCCCCCCchH---HHHHHhhcCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK----FDRAKNFG-VT-EFVNPKDHDKPI---QQVLVDLTDG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~----~~~~~~~g-~~-~vi~~~~~~~~~---~~~i~~~~~~ 139 (255)
.|+.|||+|+ +++|.+.++=...+|+ +++..+.+++. .+.+++.| +. .+.|-.+ .++. .+++++..+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~-~eei~~~a~~Vk~e~G- 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD-REEIYRLAKKVKKEVG- 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCC-HHHHHHHHHHHHHhcC-
Confidence 6899999987 7999998877777899 88888877654 33445555 32 3344332 1333 334444333
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|++++++|-
T Consensus 114 ~V~ILVNNAGI 124 (300)
T KOG1201|consen 114 DVDILVNNAGI 124 (300)
T ss_pred CceEEEecccc
Confidence 79999998884
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.01 Score=48.38 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=38.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 112 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~ 112 (255)
++.+|+|.|+|++|.+++..+...|+.+|+++.++.++.+.+.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 5578999999999999999999999878999999988877663
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0033 Score=50.57 Aligned_cols=78 Identities=23% Similarity=0.318 Sum_probs=51.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
+++++||+|+ |++|...++.+...|+ +|+++++++++.+.. .+.+... .+|..+ +..+...+++... +
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD-YAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 5789999997 9999999999999999 999999887665433 2223221 134332 1233333443322 2
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|+++.+.|
T Consensus 86 ~iD~vi~~ag 95 (264)
T PRK07576 86 PIDVLVSGAA 95 (264)
T ss_pred CCCEEEECCC
Confidence 6899998876
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0046 Score=49.15 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc--CCc-EE--eCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF--GVT-EF--VNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~--g~~-~v--i~~~~~~~~~~~~i~~~~~--~~ 140 (255)
++.+++|+|+ |.+|...++.+...|+ +|+.++++.++.+... ++ +.. .+ .|..+ +..+.+.+.+... ++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS-AEAVEALVDFVAARWGR 81 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence 4578999998 9999999988888899 9999998876654432 22 321 11 23332 1223333332221 37
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++.+.|.
T Consensus 82 id~vi~~ag~ 91 (252)
T PRK06138 82 LDVLVNNAGF 91 (252)
T ss_pred CCEEEECCCC
Confidence 9999998884
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0049 Score=50.14 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=50.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh---cCCcE-E--eCCCCCCchHHHHHHhhc--CCC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KN---FGVTE-F--VNPKDHDKPIQQVLVDLT--DGG 140 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~---~g~~~-v--i~~~~~~~~~~~~i~~~~--~~~ 140 (255)
+.++||+|+ |++|..+++.+...|+ +|++++++.++.+.. .+ .+... + .|..+ .+.+.+.+.... .++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD-AAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 578999997 9999999999999999 999999887655443 22 23321 1 23332 122322222221 136
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++++.|.
T Consensus 84 id~vi~~Ag~ 93 (287)
T PRK06194 84 VHLLFNNAGV 93 (287)
T ss_pred CCEEEECCCC
Confidence 8999998885
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0045 Score=49.38 Aligned_cols=79 Identities=29% Similarity=0.394 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |.+|...++.+...|+ +|+++++++++.+.+ ++.|... . .|..+ ++.+.+.+.+... +
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD-HDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence 4689999997 9999999998888999 999999887665443 2233221 1 24333 1233333333221 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++.+.|.
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 69999998874
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0056 Score=49.49 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=51.6
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CC--cE-EeCCCCCCchHHHHHHhhcC--CCccEE
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GV--TE-FVNPKDHDKPIQQVLVDLTD--GGVDYS 144 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~--~~-vi~~~~~~~~~~~~i~~~~~--~~~d~v 144 (255)
.++||+|+ |.+|...++.+...|. +|+++++++++.+.+++. +. .. ..|..+ ...+.+.+.+... +++|++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~v 80 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTD-SAAVRAVVDRAFAALGRIDVV 80 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 57999997 9999999998888999 999999988777666442 22 11 123332 1223333333221 368999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+.+.|.
T Consensus 81 i~~ag~ 86 (276)
T PRK06482 81 VSNAGY 86 (276)
T ss_pred EECCCC
Confidence 998874
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0053 Score=48.88 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc-EE--eCCCCCCchHHHHHHhhc--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVT-EF--VNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~i~~~~--~~ 139 (255)
++++++|+|+ |++|...++.+...|+ +|+.+++++++.+.+ ++.+.. .. .|-.+ +..+.+.+.+.. .+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTR-DAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence 4689999998 9999999988888999 999999987765443 233322 11 23222 122322222221 13
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++.+.|.
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 68999998874
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0064 Score=50.27 Aligned_cols=79 Identities=20% Similarity=0.158 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc-----CCc--E-EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF-----GVT--E-FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~-----g~~--~-vi~~~~~~~~~~~~i~~~~~- 138 (255)
++++++|+|+ +++|.++++.+...|+ +|+.+++++++.+.+ +++ +.. . ..|-.+ .....+...+...
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d-~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSS-LASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCC-HHHHHHHHHHHHHh
Confidence 4679999998 8999999998888999 999999988765544 221 111 1 124333 1222222222221
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 269999988873
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.006 Score=55.56 Aligned_cols=76 Identities=26% Similarity=0.318 Sum_probs=56.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc---------------------hHHHHHhcCCcEEeCCCCC-Cc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK---------------------KFDRAKNFGVTEFVNPKDH-DK 127 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~---------------------~~~~~~~~g~~~vi~~~~~-~~ 127 (255)
.+++|+|+|+|+.|+.+++.++..|. +|+++++.+. ..++++++|++..++..-. +.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 48999999999999999999999999 9999987653 4566678888766665320 11
Q ss_pred hHHHHHHhhcCCCccEEEecCCcH
Q 025257 128 PIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 128 ~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
.+.+ +. ..+|.||.++|..
T Consensus 388 ~~~~-l~----~~~DaV~latGa~ 406 (639)
T PRK12809 388 TFSD-LT----SEYDAVFIGVGTY 406 (639)
T ss_pred CHHH-HH----hcCCEEEEeCCCC
Confidence 2221 11 2699999999864
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0054 Score=49.10 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc-----CCc--E-EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF-----GVT--E-FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~-----g~~--~-vi~~~~~~~~~~~~i~~~~~- 138 (255)
.+++++|+|+ |++|..+++.+...|+ +|+.+++++++.+.+. ++ +.. . ..|..+ +..+.+.+.+...
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTD-AASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 4678999997 9999999999999999 9999998877665542 22 211 1 123332 1233333333221
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 84 ~g~id~li~~ag~ 96 (260)
T PRK07063 84 FGPLDVLVNNAGI 96 (260)
T ss_pred hCCCcEEEECCCc
Confidence 369999998873
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0057 Score=49.70 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
..+.+++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+.+ ++....+.. + .+..+.+ ..+|+|++|
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~--~~~~~~~-----~~~DivIna 192 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-D--LELQEEL-----ADFDLIINA 192 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-c--ccchhcc-----ccCCEEEEC
Confidence 356789999999999999999999995599999999888766643 331100111 0 1111111 268999999
Q ss_pred CCcHH
Q 025257 148 IGNVS 152 (255)
Q Consensus 148 ~g~~~ 152 (255)
+....
T Consensus 193 Tp~g~ 197 (278)
T PRK00258 193 TSAGM 197 (278)
T ss_pred CcCCC
Confidence 87543
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0058 Score=48.44 Aligned_cols=79 Identities=24% Similarity=0.198 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
++.+++|+|+ |++|...+..+...|+ +|+++++++++.+.+ +..+... ..|-.+ ++.+.+.+.+... +
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD-PASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999999999999 999999887765544 2233221 124333 1222222222211 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++.+.|.
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 79999999885
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0051 Score=49.03 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=49.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE-EeCCCCCCchHHHHHHhhcC--CCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTD--GGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~i~~~~~--~~~d~v~ 145 (255)
.++++||+|+ |++|...++.+...|+ +|+.+++++++. .....+.. ..|..+ +..+.+.+.+... +.+|+++
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~~--~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~vi 80 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPET--VDGRPAEFHAADVRD-PDQVAALVDAIVERHGRLDVLV 80 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhhh--hcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4689999997 9999999999999999 999999876541 11111221 123332 1223333333221 3689999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
.+.|.
T Consensus 81 ~~ag~ 85 (252)
T PRK07856 81 NNAGG 85 (252)
T ss_pred ECCCC
Confidence 98873
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0038 Score=50.78 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=51.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCc-EEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVT-EFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
++.+++|+|+|+.+.+++..+...|+.+|+++.|+.++.+.+. +++.. .+... ..+ +++.... ..+|+|++|
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~----~~~-~~~~~~~-~~~DiVIna 197 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRL----EGD-SGGLAIE-KAAEVLVST 197 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceec----cch-hhhhhcc-cCCCEEEEC
Confidence 5789999999999999999999999878999999988877763 33321 11100 000 1111111 258999999
Q ss_pred CCcH
Q 025257 148 IGNV 151 (255)
Q Consensus 148 ~g~~ 151 (255)
+...
T Consensus 198 Tp~g 201 (282)
T TIGR01809 198 VPAD 201 (282)
T ss_pred CCCC
Confidence 8753
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0065 Score=48.59 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc---EEeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT---EFVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
++.++||+|+ |.+|...++.+...|+ +|++++++.++.+.+. ..+.. ...|..+ +..+.+.+.+... +
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d-~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVAD-EADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 4689999997 9999999999888999 9999999887665543 22322 1123333 1233322332221 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|.++.+.|.
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 68999998874
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.023 Score=44.76 Aligned_cols=102 Identities=25% Similarity=0.312 Sum_probs=59.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc-------------------hHH----HHHhcCCcEEeCCCCCCc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-------------------KFD----RAKNFGVTEFVNPKDHDK 127 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~-------------------~~~----~~~~~g~~~vi~~~~~~~ 127 (255)
+.+|+|.|+|++|..++..+...|..+++.++...- |.+ .++++....-+...+ .
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~--~ 88 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE--E 88 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee--e
Confidence 368999999999999999999999989988885431 111 112222211111111 1
Q ss_pred hH-HHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 128 PI-QQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 128 ~~-~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.+ .+...++....+|+|+||......-..+.+.+...+-.++..+..
T Consensus 89 ~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~ 136 (231)
T cd00755 89 FLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGA 136 (231)
T ss_pred ecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 11 122223332369999999998774444555555531355555443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.014 Score=47.30 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=65.2
Q ss_pred ccccchhhhhhHHHhhcCC-CCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCc
Q 025257 50 LLGCGVPTGLGAVWNTAKV-EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 127 (255)
Q Consensus 50 ~~~~~~~ta~~~l~~~~~~-~~~~~vlI~G~g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~ 127 (255)
.+||+....+. +.+...+ -.|++|+|.|.| .+|.-++.++...|+ +|++..+.. .
T Consensus 137 ~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t---------------------~ 193 (286)
T PRK14175 137 FVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS---------------------K 193 (286)
T ss_pred CCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc---------------------h
Confidence 45543333333 3344443 478999999985 599999999999999 888877431 2
Q ss_pred hHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 128 PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 128 ~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++.+.++ .+|+|+.++|.+..+.. +.++++ ..++.+|..
T Consensus 194 ~l~~~~~-----~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~ 232 (286)
T PRK14175 194 DMASYLK-----DADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNT 232 (286)
T ss_pred hHHHHHh-----hCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCC
Confidence 2333333 48999999999874444 468886 888888874
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0055 Score=49.02 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=51.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c----CCc-EE--eCCCCCCchHHHHHHhhcCCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F----GVT-EF--VNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~----g~~-~v--i~~~~~~~~~~~~i~~~~~~~ 140 (255)
.+++++|+|+ +++|...++.+...|+ +|+++++++++.+.+.+ + +.. .. .|-.+ +..+.+.+... +.
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--g~ 81 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS-PEAREQLAAEA--GD 81 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHh--CC
Confidence 4689999997 8999999998889999 99999998876655421 1 221 11 23322 12232323222 37
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++++.|.
T Consensus 82 id~lv~~ag~ 91 (259)
T PRK06125 82 IDILVNNAGA 91 (259)
T ss_pred CCEEEECCCC
Confidence 9999998874
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.023 Score=44.66 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCC--eEEEEcCC----cch--------HHHHHhcCCcEEeCCCCCCchHHHHHH
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID----PKK--------FDRAKNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~--~v~~~~~~----~~~--------~~~~~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
-++.+++|+|+|+.|..++..+...|++ +++.++++ .++ .+++++.+... . + .++.+.++
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~---~--~~l~~~l~ 96 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-T---G--GTLKEALK 96 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-c---c--CCHHHHHh
Confidence 4568999999999999999999999997 79999987 343 22334433211 1 1 23434443
Q ss_pred hhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEc
Q 025257 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
++|+++++++....-+..++.+.++ ..++.+.
T Consensus 97 -----~~dvlIgaT~~G~~~~~~l~~m~~~-~ivf~ls 128 (226)
T cd05311 97 -----GADVFIGVSRPGVVKKEMIKKMAKD-PIVFALA 128 (226)
T ss_pred -----cCCEEEeCCCCCCCCHHHHHhhCCC-CEEEEeC
Confidence 4899999997333124666777775 5555443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0073 Score=48.29 Aligned_cols=79 Identities=19% Similarity=0.250 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcEE---eCCCCCCchHHHHHHhhc--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~--~~ 139 (255)
++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ ++.+.... .|..+ +..+.+.+.+.. .+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN-EDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4679999998 9999999999999999 999999988655443 33443321 23332 122222222221 12
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++.+.|.
T Consensus 84 ~~d~vi~~ag~ 94 (262)
T PRK13394 84 SVDILVSNAGI 94 (262)
T ss_pred CCCEEEECCcc
Confidence 68999998874
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0083 Score=47.90 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=50.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v 144 (255)
.+.+++|+|+ |++|.+.++.+...|+ +|+++.++. +..+.+++.+...+ .|-.+ +..+.+.+.+... +++|++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~id~l 83 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGN-RDQVKKSKEVVEKEFGRVDVL 83 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 4678999997 9999999999999999 888776543 33444444343322 23333 1333333333221 369999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+.+.|.
T Consensus 84 i~~ag~ 89 (255)
T PRK06463 84 VNNAGI 89 (255)
T ss_pred EECCCc
Confidence 998874
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0056 Score=48.77 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=51.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-EEe--CCCCCCchHHHHHHhhcC--CC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-EFV--NPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi--~~~~~~~~~~~~i~~~~~--~~ 140 (255)
++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+ .+.. ..+ |-.+ +..+.+.+.+... +.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN-PEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC
Confidence 468999997 8999999999999999 99999988776555422 2221 122 3332 1233333333221 36
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++++.|.
T Consensus 79 id~lI~~ag~ 88 (252)
T PRK07677 79 IDALINNAAG 88 (252)
T ss_pred ccEEEECCCC
Confidence 8999998873
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0078 Score=51.33 Aligned_cols=90 Identities=30% Similarity=0.402 Sum_probs=55.4
Q ss_pred EEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh--cC--Cc-EEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKN--FG--VT-EFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~--~g--~~-~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
|+|+|+|.+|..+++.+...+-. +|++.+++.++.+.+.+ .+ .. ..+|..+ . +.+.++.. +.|+|++|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~--~---~~l~~~~~-~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND--P---ESLAELLR-GCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT--H---HHHHHHHT-TSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC--H---HHHHHHHh-cCCEEEEC
Confidence 68999999999999999877643 79999999999777754 22 22 2234332 2 12333332 47999999
Q ss_pred CCcHHHHHHHHHHhccCCceEEE
Q 025257 148 IGNVSVMRAALECCHKGWGTSVI 170 (255)
Q Consensus 148 ~g~~~~~~~~~~~l~~~~G~~v~ 170 (255)
+|......-+-.++..+ -.++.
T Consensus 75 ~gp~~~~~v~~~~i~~g-~~yvD 96 (386)
T PF03435_consen 75 AGPFFGEPVARACIEAG-VHYVD 96 (386)
T ss_dssp SSGGGHHHHHHHHHHHT--EEEE
T ss_pred CccchhHHHHHHHHHhC-CCeec
Confidence 99875334444455554 56655
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.008 Score=47.99 Aligned_cols=78 Identities=27% Similarity=0.373 Sum_probs=50.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcC---CcE-EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFG---VTE-FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g---~~~-vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+. ++. +.. ..|-.+ .+.+...+.+... +++|
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d 79 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTD-AASLAAALANAAAERGPVD 79 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 468999998 8999999988888999 9999999887765543 221 221 123332 1222233332211 2689
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++.+.|.
T Consensus 80 ~vi~~ag~ 87 (257)
T PRK07074 80 VLVANAGA 87 (257)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.025 Score=41.72 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=54.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|+|.|+|.+|..-++.+...|+ +|++++ ++..+.+++++.-.+ ..+ .+.+. ++ .++|+|+-+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~~-~~~----~~~~~--dl--~~a~lViaaT~ 79 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYITW-KQK----TFSND--DI--KDAHLIYAATN 79 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcEE-Eec----ccChh--cC--CCceEEEECCC
Confidence 56899999999999999998888999 998884 454455555542222 111 11110 01 26999999999
Q ss_pred cHHHHHHHHHHhcc
Q 025257 150 NVSVMRAALECCHK 163 (255)
Q Consensus 150 ~~~~~~~~~~~l~~ 163 (255)
.+. .+..+.....
T Consensus 80 d~e-~N~~i~~~a~ 92 (157)
T PRK06719 80 QHA-VNMMVKQAAH 92 (157)
T ss_pred CHH-HHHHHHHHHH
Confidence 888 6655555544
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.005 Score=48.63 Aligned_cols=80 Identities=25% Similarity=0.327 Sum_probs=51.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC---cE-EeCCCCC-Cch---HHHHHHhh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV---TE-FVNPKDH-DKP---IQQVLVDL 136 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~---~~-vi~~~~~-~~~---~~~~i~~~ 136 (255)
++.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+. +.+. .. -.|..+. ... +.+.+.+.
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 4579999997 9999999999999999 9999999887655442 2221 11 1222110 022 23334433
Q ss_pred cCCCccEEEecCCc
Q 025257 137 TDGGVDYSFECIGN 150 (255)
Q Consensus 137 ~~~~~d~v~d~~g~ 150 (255)
..+.+|+++.+.|.
T Consensus 84 ~~~~id~vi~~ag~ 97 (239)
T PRK08703 84 TQGKLDGIVHCAGY 97 (239)
T ss_pred hCCCCCEEEEeccc
Confidence 32468999998884
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0097 Score=47.55 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=51.6
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCe-EEEEcCCcchHHH----HHhcCCcE---EeCCCCCCchHHHHHHhhcC-
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASR-VIGIDIDPKKFDR----AKNFGVTE---FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~-v~~~~~~~~~~~~----~~~~g~~~---vi~~~~~~~~~~~~i~~~~~- 138 (255)
.++++++|+|+ |++|..+++.+...|+ + |+++++++++.+. +++.+... ..|..+ +..+.+.+.....
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 81 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGA-AGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD-VEDCRRVVAAADEA 81 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 35688999998 8999999999999999 6 9999987665542 23344321 234333 1222222222211
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+++|.++++.|.
T Consensus 82 ~g~id~li~~ag~ 94 (260)
T PRK06198 82 FGRLDALVNAAGL 94 (260)
T ss_pred hCCCCEEEECCCc
Confidence 369999999874
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0071 Score=48.29 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.+++++|+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ ++++... ..|-.+ +..+.+.+.+... +.+|
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~id 86 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVAD-EAQVAAGVAEVLGQFGRLD 86 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4678999997 9999999999988999 999998877655444 3444221 123332 1223222333322 2689
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++.+.|.
T Consensus 87 ~li~~ag~ 94 (255)
T PRK05717 87 ALVCNAAI 94 (255)
T ss_pred EEEECCCc
Confidence 99998874
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0078 Score=48.15 Aligned_cols=77 Identities=23% Similarity=0.270 Sum_probs=52.2
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cC---CcE-EeCCCCCCchHHHHHHhhc---CCCcc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FG---VTE-FVNPKDHDKPIQQVLVDLT---DGGVD 142 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g---~~~-vi~~~~~~~~~~~~i~~~~---~~~~d 142 (255)
+++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+ .+ ... ..|-.+ ...+.+.+.+.. .+++|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTD-RAAWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCC
Confidence 47999997 9999999998888999 99999998887766633 22 111 234333 123333333321 34799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++.+.|.
T Consensus 80 ~vi~~ag~ 87 (260)
T PRK08267 80 VLFNNAGI 87 (260)
T ss_pred EEEECCCC
Confidence 99998884
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.014 Score=44.07 Aligned_cols=71 Identities=28% Similarity=0.434 Sum_probs=58.6
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
-++||.+||=+|+|. |.+...|-...++ ...+++.++++...+.+.|.. |+. .++.+.+..+.++.||+|+
T Consensus 10 ~I~pgsrVLDLGCGd-G~LL~~L~~~k~v-~g~GvEid~~~v~~cv~rGv~-Viq-----~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGD-GELLAYLKDEKQV-DGYGVEIDPDNVAACVARGVS-VIQ-----GDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred HcCCCCEEEecCCCc-hHHHHHHHHhcCC-eEEEEecCHHHHHHHHHcCCC-EEE-----CCHHHhHhhCCCCCccEEe
Confidence 478999999999974 7777777777899 999999999999999898987 442 5666777777666899998
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.015 Score=45.38 Aligned_cols=97 Identities=24% Similarity=0.296 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--EEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
-+|.+||=.|+|+ |+++ +-+...|+ +|++++-+++..+.++.-... .-+|+. ....+++...- +.||+|+.
T Consensus 58 l~g~~vLDvGCGg-G~Ls-e~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~---~~~~edl~~~~-~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGG-GILS-EPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYR---QATVEDLASAG-GQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCc-cHhh-HHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccch---hhhHHHHHhcC-CCccEEEE
Confidence 4788999999863 5444 44455889 999999999988888632211 125565 34444444331 38999974
Q ss_pred -----cCCcHH-HHHHHHHHhccCCceEEEEcc
Q 025257 147 -----CIGNVS-VMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 147 -----~~g~~~-~~~~~~~~l~~~~G~~v~~g~ 173 (255)
-+..+. .+....++++|+ |.++.--.
T Consensus 131 mEVlEHv~dp~~~~~~c~~lvkP~-G~lf~STi 162 (243)
T COG2227 131 MEVLEHVPDPESFLRACAKLVKPG-GILFLSTI 162 (243)
T ss_pred hhHHHccCCHHHHHHHHHHHcCCC-cEEEEecc
Confidence 333433 357788899997 88765533
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0073 Score=48.39 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=50.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +..+... ..|..+ +..+.+.+.+... +++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSD-AEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence 57999998 9999999999889999 999999987665443 2234321 123332 1233333333321 268
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++.+.|.
T Consensus 80 d~vi~~ag~ 88 (263)
T PRK06181 80 DILVNNAGI 88 (263)
T ss_pred CEEEECCCc
Confidence 999999874
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0077 Score=48.76 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=51.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC----cE-EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV----TE-FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~----~~-vi~~~~~~~~~~~~i~~~~~- 138 (255)
.+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+. ..+. .. ..|..+ ++.+.+ +.+...
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~-~~~~~~~ 78 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD-QNSIHN-FQLVLKE 78 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC-HHHHHH-HHHHHHh
Confidence 3568999998 9999999998888999 9999998877655542 2221 11 124333 123333 433321
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+++|+++.+.|.
T Consensus 79 ~~~id~vv~~ag~ 91 (280)
T PRK06914 79 IGRIDLLVNNAGY 91 (280)
T ss_pred cCCeeEEEECCcc
Confidence 368999998874
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.077 Score=40.90 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=56.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
.+.+|||.|+|.+|...++.+...|+ +|+++.+... ....+.+.+.-.. .... +.+. .+ .++|+|+-|+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~~~i~~-~~~~----~~~~--~l--~~adlViaaT 78 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEEGKIRW-KQKE----FEPS--DI--VDAFLVIAAT 78 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhCCCEEE-EecC----CChh--hc--CCceEEEEcC
Confidence 46799999999999999998888998 9998875432 1122222221111 1111 1110 01 2689999999
Q ss_pred CcHHHHHHHHHHhccCCceEEEEcc
Q 025257 149 GNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.+. ++..+...... +.++.+..
T Consensus 79 ~d~e-lN~~i~~~a~~-~~lvn~~d 101 (202)
T PRK06718 79 NDPR-VNEQVKEDLPE-NALFNVIT 101 (202)
T ss_pred CCHH-HHHHHHHHHHh-CCcEEECC
Confidence 9988 55555544454 55655543
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0075 Score=50.02 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC---C--cE-EeCCCCCCchHHHHHHhhc--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG---V--TE-FVNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g---~--~~-vi~~~~~~~~~~~~i~~~~--~~ 139 (255)
++.+++|+|+ |++|..+++.+...|+ +|+++++++++.+.+ .++. . .. ..|-.+ ...+.+.+.+.. .+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD-LDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC-HHHHHHHHHHHHHhCC
Confidence 4678999997 9999999998888999 999999988776554 3332 1 11 123332 122222232221 22
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
.+|+++++.|
T Consensus 83 ~iD~li~nAg 92 (322)
T PRK07453 83 PLDALVCNAA 92 (322)
T ss_pred CccEEEECCc
Confidence 6999999887
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0069 Score=49.08 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=50.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC----cE-EeCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV----TE-FVNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~----~~-vi~~~~~~~~~~~~i~~~~~--~~ 140 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ .+++. .. ..|-.+ +..+.+.+.+... ++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV-EDDVSRAVDFTVDKFGT 94 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence 4678999997 9999999988888999 999999876655443 33321 11 133333 1223332332221 36
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++++.|.
T Consensus 95 id~li~~Ag~ 104 (280)
T PLN02253 95 LDIMVNNAGL 104 (280)
T ss_pred CCEEEECCCc
Confidence 9999998874
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.012 Score=45.04 Aligned_cols=76 Identities=26% Similarity=0.317 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c----CCcE-EeCCCCCCchHHHHHHhhcCCCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F----GVTE-FVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~----g~~~-vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
++.+++|+|+ |++|...+..+...|+ +|+++.++.++.+.+.+ + +... ..+..+ ..++.+.+. ++|
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-----~~d 99 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD-DAARAAAIK-----GAD 99 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC-HHHHHHHHh-----cCC
Confidence 5689999997 9999999888888898 99999998877666532 2 2221 122211 122223332 589
Q ss_pred EEEecCCcHH
Q 025257 143 YSFECIGNVS 152 (255)
Q Consensus 143 ~v~d~~g~~~ 152 (255)
+|+.++....
T Consensus 100 iVi~at~~g~ 109 (194)
T cd01078 100 VVFAAGAAGV 109 (194)
T ss_pred EEEECCCCCc
Confidence 9999887654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0078 Score=47.90 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-EE--eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT-EF--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
++.++||+|+ |++|...++.+...|+ +|+.+++++++.+.+. +.+.. .. .|..+ .....+.+.+... +
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE-MEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 3578999997 9999999999999999 9999998876655442 22321 11 23332 1223222333221 2
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
.+|+++++.|
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 6899998887
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0073 Score=48.79 Aligned_cols=78 Identities=22% Similarity=0.377 Sum_probs=49.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HH---hcCC--cE-EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AK---NFGV--TE-FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~---~~g~--~~-vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
+++++||+|+ +++|.+.++.+...|+ +|++++++ ++.+. +. +.+. .. ..|-.+ +......+.+... +
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISD-EQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHHHcC
Confidence 4679999998 8999999998888999 99999988 44332 22 2232 11 234333 1233333333221 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++++.|.
T Consensus 82 ~id~li~~Ag~ 92 (272)
T PRK08589 82 RVDVLFNNAGV 92 (272)
T ss_pred CcCEEEECCCC
Confidence 68999998874
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0092 Score=47.32 Aligned_cols=77 Identities=18% Similarity=0.318 Sum_probs=50.5
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----c--CCc-E--EeCCCCCCchHHHHHHhhcC--
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----F--GVT-E--FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~--g~~-~--vi~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+.+ . +.. . ..|..+ +..+.+.+.+...
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVND-HDQVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 468999997 9999999988888898 99999998877655422 1 211 1 124433 1233333333222
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+++|+++.+.|
T Consensus 80 ~~id~vi~~ag 90 (248)
T PRK08251 80 GGLDRVIVNAG 90 (248)
T ss_pred CCCCEEEECCC
Confidence 26999999887
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0079 Score=47.98 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=50.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE---EeCCCCCCchHHHHHHhhcC--CC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~ 140 (255)
++++||+|+ |++|...++.+...|+ +|+++++++++.+.+. +.+... ..|-.+ ++.+.+.+.+... ++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD-RDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 568999997 9999999999999999 9999998876655442 223221 123332 1223332332221 36
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++.+.|.
T Consensus 80 id~vi~~ag~ 89 (256)
T PRK08643 80 LNVVVNNAGV 89 (256)
T ss_pred CCEEEECCCC
Confidence 9999998864
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.011 Score=47.02 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=47.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhcCCc-EEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~~~~~~g~~-~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.+++++|+|+ |++|.+.++.+...|+ +|+++++++. ..+...+.... ...|-.+ . +.+.+.. +.+|++++
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~--~---~~~~~~~-~~iDilVn 85 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESNDESPNEWIKWECGK--E---ESLDKQL-ASLDVLIL 85 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhccCCCeEEEeeCCC--H---HHHHHhc-CCCCEEEE
Confidence 3579999997 8999999999999999 9999988762 22221111111 1123322 2 2233332 26999999
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
+.|.
T Consensus 86 nAG~ 89 (245)
T PRK12367 86 NHGI 89 (245)
T ss_pred CCcc
Confidence 9874
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0054 Score=49.13 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=48.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE-EeCCCCCCchHHHHHHhhcC--CCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTD--GGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~i~~~~~--~~~d~v~ 145 (255)
+++++||+|+ +++|.+.+..+...|+ +|+++++++++.. .... ..|-.+ +..+.+.+.+... +.+|+++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~-----~~~~~~~D~~~-~~~i~~~~~~~~~~~~~id~li 77 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN-----DVDYFKVDVSN-KEQVIKGIDYVISKYGRIDILV 77 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC-----ceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4679999997 8999999999999999 9999998765432 1111 123332 1233333333222 2699999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 78 ~~Ag~ 82 (258)
T PRK06398 78 NNAGI 82 (258)
T ss_pred ECCCC
Confidence 98873
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0095 Score=45.86 Aligned_cols=82 Identities=30% Similarity=0.394 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
-+|.+++|.|.|.+|..+++.+...|+ +|+++++++++.+.+++ +|+. .++.. ++.. ..+|+++.|
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~--------~l~~---~~~Dv~vp~ 92 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPE--------EIYS---VDADVFAPC 92 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcch--------hhcc---ccCCEEEec
Confidence 367899999999999999999999999 99999998887777654 4654 33322 1111 158999866
Q ss_pred CCcHHHHHHHHHHhcc
Q 025257 148 IGNVSVMRAALECCHK 163 (255)
Q Consensus 148 ~g~~~~~~~~~~~l~~ 163 (255)
......-+..++.++.
T Consensus 93 A~~~~I~~~~~~~l~~ 108 (200)
T cd01075 93 ALGGVINDDTIPQLKA 108 (200)
T ss_pred ccccccCHHHHHHcCC
Confidence 5544334555566654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0077 Score=53.43 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=54.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+++++||+|+ +++|.+.++.+...|+ +|+.++++.++.+.+ ++++... ..|-.+ ++.+.+.+.+... +++|
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~iD 81 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSD-EAQIREGFEQLHREFGRID 81 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCC-HHHHHHHHHHHHHHhCCCC
Confidence 5789999997 8999999999999999 999999988876655 4455322 234333 1333333333221 3699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 82 ~li~nag~ 89 (520)
T PRK06484 82 VLVNNAGV 89 (520)
T ss_pred EEEECCCc
Confidence 99998774
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0086 Score=47.61 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=50.8
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCc--EE-eCCCCCCchHHHHHHhhcC--CCccEEE
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVT--EF-VNPKDHDKPIQQVLVDLTD--GGVDYSF 145 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~--~v-i~~~~~~~~~~~~i~~~~~--~~~d~v~ 145 (255)
+++|+|+ |++|.+.++.+...|+ +|+++++++++.+.+.. ++.. .+ .|-.+ ...+.+.+.+... +++|.++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~id~vi 79 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWRNIDVLV 79 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 6899997 9999999999999999 99999998887766533 3432 11 23332 1233333333221 2699999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
.+.|.
T Consensus 80 ~~ag~ 84 (248)
T PRK10538 80 NNAGL 84 (248)
T ss_pred ECCCc
Confidence 88774
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.018 Score=45.27 Aligned_cols=34 Identities=35% Similarity=0.384 Sum_probs=30.1
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
+.+|+|.|+|++|..++..+...|..+++.++.+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4789999999999999999999999888888643
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0094 Score=49.04 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc-----CCc--E-EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF-----GVT--E-FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~-----g~~--~-vi~~~~~~~~~~~~i~~~~~- 138 (255)
.+++++|+|+ |++|..+++.+...|+ +|++++++.++.+.+ +++ +.. . ..|-.+ .+...+.+.+...
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS-LASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHhh
Confidence 5689999997 9999999998888999 999999887665433 111 111 1 123333 1223333333221
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 93 ~~~iD~li~nAg~ 105 (306)
T PRK06197 93 YPRIDLLINNAGV 105 (306)
T ss_pred CCCCCEEEECCcc
Confidence 269999998873
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.029 Score=44.32 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=48.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHH----HHhcCCc-EE--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDR----AKNFGVT-EF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~----~~~~g~~-~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
++.+++|+|+ |++|...++.+...|+ +++.+.++... .+. ++..+.. .. .|-.+ +..+.+.+.+...
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVAD-AAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4678999997 9999999999999999 88877654332 222 2233321 11 23222 1233333333211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++.+.|.
T Consensus 82 ~~id~vi~~ag~ 93 (245)
T PRK12937 82 GRIDVLVNNAGV 93 (245)
T ss_pred CCCCEEEECCCC
Confidence 368999998874
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.008 Score=48.69 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ +..+... ..|-.+ +.++.+.+.+... +
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH-REEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHHHcC
Confidence 4678999997 9999999999999999 999999887665543 2234321 123322 1223332222211 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++++.|.
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 68999998873
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.028 Score=43.84 Aligned_cols=103 Identities=24% Similarity=0.285 Sum_probs=62.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc-----hHHHH---HhcC---------------C-cEEeCCCCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-----KFDRA---KNFG---------------V-TEFVNPKDH 125 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~-----~~~~~---~~~g---------------~-~~vi~~~~~ 125 (255)
+...|+|.|.|+||.+++..+.+.|+.++..++...- +++.- ...| + .+|.-.++
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~- 107 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND- 107 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh-
Confidence 4578999999999999999999999988888864321 11111 1122 1 11111111
Q ss_pred CchHHHHHHhhcCCCccEEEecCCcHHH-HHHHHHHhccCCceEEEEccCC
Q 025257 126 DKPIQQVLVDLTDGGVDYSFECIGNVSV-MRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 126 ~~~~~~~i~~~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
--..+.+.++...++|+|+||...-.. ...+..|.+.+ -.++..+..+
T Consensus 108 -f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k-i~vIss~Gag 156 (263)
T COG1179 108 -FITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK-IPVISSMGAG 156 (263)
T ss_pred -hhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC-CCEEeecccc
Confidence 112234455555589999999987552 23333355554 5777776654
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.012 Score=46.99 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=50.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHH----HHhcCCc--EE-eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDR----AKNFGVT--EF-VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~----~~~~g~~--~v-i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ +++|.++++.+...|+ +|+++++++++ .+. ++..+.. .+ .|-.+ +..+.+.+.+...
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS-KADLRAAVARTEAEL 84 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4679999997 8999999999999999 99999876542 222 2233422 11 23332 1233333333221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 85 g~id~li~~ag~ 96 (254)
T PRK06114 85 GALTLAVNAAGI 96 (254)
T ss_pred CCCCEEEECCCC
Confidence 368999998884
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.009 Score=48.30 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=50.0
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcEE--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g--~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ + ++|.+.++.+...|+ +|+.++++++..+.+ ++.|.... .|-.+ ++...+.+.+...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED-IASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC-HHHHHHHHHHHHHHh
Confidence 5689999997 4 899999999999999 999988765322222 33453322 23333 1223333333222
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
|.+|+++++.|.
T Consensus 84 g~iD~lVnnAG~ 95 (271)
T PRK06505 84 GKLDFVVHAIGF 95 (271)
T ss_pred CCCCEEEECCcc
Confidence 379999998873
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.012 Score=47.85 Aligned_cols=97 Identities=20% Similarity=0.153 Sum_probs=64.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhc-----CCcEEeCCCCCCchHHHHHHhhcCCCccE
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNF-----GVTEFVNPKDHDKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~-----g~~~vi~~~~~~~~~~~~i~~~~~~~~d~ 143 (255)
+.++|+-.|+|+.++.++.+++.+.. .+++.++.+++..+.+++. |...-+.... .+..+.... .+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~--~Da~~~~~~--l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT--ADVMDVTES--LKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE--Cchhhcccc--cCCcCE
Confidence 77899999999999999988876543 2799999999888887653 2222122221 222221111 137999
Q ss_pred EEecC-------CcHHHHHHHHHHhccCCceEEEE
Q 025257 144 SFECI-------GNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 144 v~d~~-------g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
||-.+ .....++.+.+.|++| |.++.=
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lvlr 232 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLMLR 232 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcCCC-cEEEEe
Confidence 98654 2344578999999996 877644
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.009 Score=47.61 Aligned_cols=78 Identities=22% Similarity=0.403 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc----CCc---E-EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF----GVT---E-FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~----g~~---~-vi~~~~~~~~~~~~i~~~~~- 138 (255)
+++++||+|+ |++|...+..+...|+ +|+.+++++++.+.+ +++ +.. . ..|-.+ +..+.+.+.+...
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~ 80 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD-QESLEEFLSKSAEK 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC-HHHHHHHHHHHHHH
Confidence 4689999997 8999999999999999 999999887776544 222 211 1 224333 1233333333222
Q ss_pred -CCccEEEecCC
Q 025257 139 -GGVDYSFECIG 149 (255)
Q Consensus 139 -~~~d~v~d~~g 149 (255)
+++|+++++.+
T Consensus 81 ~~~id~vi~~A~ 92 (256)
T PRK09186 81 YGKIDGAVNCAY 92 (256)
T ss_pred cCCccEEEECCc
Confidence 26899999875
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0083 Score=47.10 Aligned_cols=74 Identities=23% Similarity=0.245 Sum_probs=49.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-EEeCCCCCCchHHHHHHhhcCC-CccEEEe
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDG-GVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d 146 (255)
+++++||+|+ |.+|...++.+...|. +|+++.+++++ ..... ...|..+ +..+.+.+.+.... +.|+++.
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~-----~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~d~vi~ 74 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAID-----DFPGELFACDLAD-IEQTAATLAQINEIHPVDAIVN 74 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCccc-----ccCceEEEeeCCC-HHHHHHHHHHHHHhCCCcEEEE
Confidence 3578999998 9999999999999999 99999987654 11211 1223332 13333334443333 6899999
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
+.|.
T Consensus 75 ~ag~ 78 (234)
T PRK07577 75 NVGI 78 (234)
T ss_pred CCCC
Confidence 8874
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.009 Score=48.36 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc--E-EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT--E-FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~--~-vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
++++++|+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+.. . ..|..+ +..+...+.+... +
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD-KESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4688999997 9999999999999999 9999998876654442 22322 1 123332 1223333332221 3
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
.+|+++.+.|
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 7999999887
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0092 Score=47.78 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=49.6
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcEE--eCCCCCCchHHHHHHhhcC--CCccE
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF--VNPKDHDKPIQQVLVDLTD--GGVDY 143 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v--i~~~~~~~~~~~~i~~~~~--~~~d~ 143 (255)
++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +.+.-.. .|-.+ ++.+.+.+.+... +++|+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSD-KDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC-HHHHHHHHHHHHHhcCCCCE
Confidence 6899997 8999999999988999 9999999877655442 2231112 23332 1233333333221 37999
Q ss_pred EEecCCc
Q 025257 144 SFECIGN 150 (255)
Q Consensus 144 v~d~~g~ 150 (255)
++++.|.
T Consensus 80 li~naG~ 86 (259)
T PRK08340 80 LVWNAGN 86 (259)
T ss_pred EEECCCC
Confidence 9998874
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0072 Score=48.33 Aligned_cols=78 Identities=26% Similarity=0.314 Sum_probs=50.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH---hcCCcE---EeCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK---NFGVTE---FVNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~---~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~ 140 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++...+..+ +.+.+. ..|..+ .....+.+.+... +.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 84 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLET-YAGAQAAMAAAVEAFGR 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC-HHHHHHHHHHHHHHcCC
Confidence 4678999997 9999999999999999 9999998754333332 234321 234332 1223333333221 36
Q ss_pred ccEEEecCC
Q 025257 141 VDYSFECIG 149 (255)
Q Consensus 141 ~d~v~d~~g 149 (255)
+|+++++.|
T Consensus 85 id~lv~nAg 93 (260)
T PRK12823 85 IDVLINNVG 93 (260)
T ss_pred CeEEEECCc
Confidence 999999887
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=47.15 Aligned_cols=106 Identities=17% Similarity=0.181 Sum_probs=66.4
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHhh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~~ 136 (255)
+....+..+.++||-+|.+ +|..++.+++.++. .+|+.++.+++..+.++ +.|..+-+.... .+..+.+.++
T Consensus 110 L~~L~~~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~--GdA~e~L~~l 186 (278)
T PLN02476 110 LAMLVQILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH--GLAAESLKSM 186 (278)
T ss_pred HHHHHHhcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHHH
Confidence 3445566678899999874 36677777776632 27999999998777774 456532222221 3333334332
Q ss_pred c----CCCccEEE-ecCCc--HHHHHHHHHHhccCCceEEEE
Q 025257 137 T----DGGVDYSF-ECIGN--VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 137 ~----~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~ 171 (255)
. .+.||.|| |+--. +..++.+++.+++| |.++.=
T Consensus 187 ~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~D 227 (278)
T PLN02476 187 IQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVMD 227 (278)
T ss_pred HhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEe
Confidence 1 23799998 54432 33478889999996 876643
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0094 Score=48.14 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=50.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh---cC--Cc-EE--eCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KN---FG--VT-EF--VNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~---~g--~~-~v--i~~~~~~~~~~~~i~~~~~- 138 (255)
++.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.. .+ .+ .. .+ .|-.+ +..+.+.+.+...
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD-EDQVARAVDAATAW 83 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 4689999997 9999999999999999 999999887665433 22 21 11 12 23332 1233333333322
Q ss_pred -CCccEEEecCC
Q 025257 139 -GGVDYSFECIG 149 (255)
Q Consensus 139 -~~~d~v~d~~g 149 (255)
+++|+++.+.|
T Consensus 84 ~~~~d~li~~ag 95 (276)
T PRK05875 84 HGRLHGVVHCAG 95 (276)
T ss_pred cCCCCEEEECCC
Confidence 26899999887
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.01 Score=47.31 Aligned_cols=79 Identities=18% Similarity=0.282 Sum_probs=49.7
Q ss_pred CCCEEEEEcCC---hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC---cEE-eCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGLG---TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV---TEF-VNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~g---~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~---~~v-i~~~~~~~~~~~~i~~~~~--~~ 140 (255)
.+++++|+|++ ++|.+.++.+...|+ +|+.+.++++..+.++++.. ..+ .|-.+ ++...+.+.+... +.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS-DESIERAFATIKERVGK 83 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCC-HHHHHHHHHHHHHHhCC
Confidence 56899999873 899999998888999 99999887443344444321 111 23332 1223333333221 36
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++++.|.
T Consensus 84 iD~lv~nAg~ 93 (252)
T PRK06079 84 IDGIVHAIAY 93 (252)
T ss_pred CCEEEEcccc
Confidence 9999998873
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0078 Score=47.95 Aligned_cols=79 Identities=24% Similarity=0.337 Sum_probs=51.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---cCCc--E-EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N---FGVT--E-FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~---~g~~--~-vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+. + .+.. . ..|..+ +..+.+.+..... +
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD-EEAINAGIDYAVETFG 80 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4578999997 9999999998888999 9999999887655442 2 2322 1 223332 1223232322211 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++.+++.
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 69999998873
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0093 Score=47.04 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=50.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
.+.+++|+|+ |.+|..++..+...|+ +|+.+++++++.+.+ +..+... + .|..+ +..+.+.++.... +
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSD-YEEVTAAIEQLKNELG 83 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 3578999997 8999999998889999 999999987665443 2223221 1 23222 1233333333221 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|.++.+.|.
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 79999998874
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.014 Score=45.96 Aligned_cols=69 Identities=26% Similarity=0.358 Sum_probs=50.2
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 74 VAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 74 vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~--~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
|+|+|+ |.+|...++.+...+. +|.+..|++. ..+.+++.|+..+. |+.+ .+.+.+... ++|.||.+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~-----~~~l~~al~-g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVVEADYDD-----PESLVAALK-GVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEEES-TT------HHHHHHHHT-TCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEeecccCC-----HHHHHHHHc-CCceEEeecC
Confidence 789998 9999999999999888 9999999864 35566788987542 2222 233333332 6999998888
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.01 Score=47.33 Aligned_cols=79 Identities=28% Similarity=0.430 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCc--E-EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVT--E-FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~--~-vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|...++.+...|+ +|+.++++.++.+.+. +++.. . ..|-.+ +....+.+.+... +.+|
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTR-QDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 3578999997 9999999999999999 9999999887766553 33321 1 123222 1233333333221 3689
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++.+.|.
T Consensus 83 ~li~~ag~ 90 (257)
T PRK07067 83 ILFNNAAL 90 (257)
T ss_pred EEEECCCc
Confidence 99998763
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.016 Score=45.02 Aligned_cols=102 Identities=21% Similarity=0.240 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEEeC-------CCCCCch-HHHHHHhhc-
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVN-------PKDHDKP-IQQVLVDLT- 137 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~-------~~~~~~~-~~~~i~~~~- 137 (255)
+.++.+||+.|+|. |.-++.+|. .|. +|++++.|+.-.+.+ ++.+...... ++...-+ +...+.++.
T Consensus 32 ~~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 32 LPAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 35778999999985 888888875 799 999999999888875 3333221000 0000000 000111111
Q ss_pred --CCCccEEEecCC--------cHHHHHHHHHHhccCCceEEEEcc
Q 025257 138 --DGGVDYSFECIG--------NVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 --~~~~d~v~d~~g--------~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.||.|+|+.. .+..++.+.++|+++ |+++.++.
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~ 153 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITL 153 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEE
Confidence 126899999653 123477899999997 98766654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.011 Score=47.82 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=49.1
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc--E--EeCCCCCCchHHHHHHhhcC--CCc
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVT--E--FVNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~--~--vi~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
+++|+|+ |++|..+++.+...|+ +|+++++++++.+.+ +..+.. . ..|-.+ +....+.+.+... +++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD-YDAVAAFAADIHAAHGSM 79 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC-HHHHHHHHHHHHHhcCCC
Confidence 6899997 9999999999989999 999999887665443 223332 1 234433 1222222222211 269
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|.++++.|.
T Consensus 80 d~lv~~ag~ 88 (272)
T PRK07832 80 DVVMNIAGI 88 (272)
T ss_pred CEEEECCCC
Confidence 999999874
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0074 Score=47.54 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=49.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
.+.+++|+|+ |.+|..+++.+...|+.+|+++++++++.+. ....+..+ .|..+ +..+.+.+... +.+|+++.+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~-~~~~~~~~~~~--~~id~vi~~ 80 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-LGPRVVPLQLDVTD-PASVAAAAEAA--SDVTILVNN 80 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-cCCceEEEEecCCC-HHHHHHHHHhc--CCCCEEEEC
Confidence 4578999997 9999999999999997689989887765543 11112211 23332 12232222221 258999998
Q ss_pred CCc
Q 025257 148 IGN 150 (255)
Q Consensus 148 ~g~ 150 (255)
.|.
T Consensus 81 ag~ 83 (238)
T PRK08264 81 AGI 83 (238)
T ss_pred CCc
Confidence 876
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0094 Score=47.52 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=50.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhcCCcE---EeCCCCCCchHHHHHHhhcC--CCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK--FDRAKNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~--~~~~~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
+++++||+|+ +++|.+.++.+...|+ +|+++++++.. .+.+++.+... ..|-.+ +++..+.+.+... +++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~i 84 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQ-QKDIDSIVSQAVEVMGHI 84 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC-HHHHHHHHHHHHHHcCCC
Confidence 4689999997 8999999999999999 99988765422 22334444321 234333 1233333333221 369
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++++.|.
T Consensus 85 D~lv~~ag~ 93 (251)
T PRK12481 85 DILINNAGI 93 (251)
T ss_pred CEEEECCCc
Confidence 999998873
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.043 Score=45.65 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCChHHHHHHHH-HHHcCCCeEEEEcCCcchHHHHHh-----cCCcEEeCCCCCCchHHHHHHhhcCCCcc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEG-AKAAGASRVIGIDIDPKKFDRAKN-----FGVTEFVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l-~~~~g~~~v~~~~~~~~~~~~~~~-----~g~~~vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
+...+++|.|+|..|...+.. +...++++|.+..+++++.+.+.+ ++.... .. .++.+.++ ..|
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~-~~----~~~~~~~~-----~aD 194 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIY-VV----NSADEAIE-----EAD 194 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEE-Ee----CCHHHHHh-----cCC
Confidence 456789999999999876654 446688799999999888766532 343311 11 23333442 589
Q ss_pred EEEecCCcHHHHHHHHHHhccCCceEEEEccCC
Q 025257 143 YSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 143 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+|+.|++... .... ..+++| -++..+|...
T Consensus 195 iVi~aT~s~~-p~i~-~~l~~G-~hV~~iGs~~ 224 (325)
T PRK08618 195 IIVTVTNAKT-PVFS-EKLKKG-VHINAVGSFM 224 (325)
T ss_pred EEEEccCCCC-cchH-HhcCCC-cEEEecCCCC
Confidence 9999998766 3334 888996 8888998864
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.01 Score=47.48 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=49.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---cCCc--E-EeCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN---FGVT--E-FVNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~---~g~~--~-vi~~~~~~~~~~~~i~~~~~--~~ 140 (255)
++.+++|+|+ |++|...++.+...|+ +|+.++++++..+..++ .+.. . ..|..+ +..+.+.+.+... +.
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~~ 82 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRD-PASVAAAIKRAKEKEGR 82 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 4679999997 9999999999888999 99999987654333322 2322 1 123332 1222222222211 36
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++.+.|.
T Consensus 83 id~vi~~ag~ 92 (263)
T PRK08226 83 IDILVNNAGV 92 (263)
T ss_pred CCEEEECCCc
Confidence 8999998883
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.018 Score=47.03 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=31.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
++++++|+|+|++|.+++..+...|+++|+++.|++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 567999999999999999988899995699999886
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.013 Score=49.69 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
-.+.++||.|+|-+|..++..+...|..+|++.-|+.++.+.+ +++|+.. +.. +++.+.+. .+|+||.+
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~-~~l----~el~~~l~-----~~DvViss 245 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEA-VAL----EELLEALA-----EADVVISS 245 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCee-ecH----HHHHHhhh-----hCCEEEEe
Confidence 4678999999999999999999999987899999988887765 7788542 222 22323332 59999999
Q ss_pred CCcHHH---HHHHHHHhccCCc-eEEEEccC
Q 025257 148 IGNVSV---MRAALECCHKGWG-TSVIVGVA 174 (255)
Q Consensus 148 ~g~~~~---~~~~~~~l~~~~G-~~v~~g~~ 174 (255)
++.+.. -....+.++.... -++.++.+
T Consensus 246 Tsa~~~ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 246 TSAPHPIITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred cCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence 997662 1233344444313 34555543
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.014 Score=45.53 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=46.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c-CCcEE-eCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F-GVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~-g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
.++||+|+ |.+|..++..+... . +|+++++++++.+.+.+ . +...+ .|-.+ +..+.+.+... +++|.++.+
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~id~vi~~ 78 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDLTD-PEAIAAAVEQL--GRLDVLVHN 78 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCCCC-HHHHHHHHHhc--CCCCEEEEC
Confidence 57999997 99999988777766 7 99999998777655542 2 22211 23222 12222222221 269999998
Q ss_pred CCc
Q 025257 148 IGN 150 (255)
Q Consensus 148 ~g~ 150 (255)
.|.
T Consensus 79 ag~ 81 (227)
T PRK08219 79 AGV 81 (227)
T ss_pred CCc
Confidence 874
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.032 Score=44.65 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=48.0
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCc---chHHHH-Hhc-CCc--E-EeCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP---KKFDRA-KNF-GVT--E-FVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~---~~~~~~-~~~-g~~--~-vi~~~~~~~~~~~~i~~~~~ 138 (255)
.+++++|+|+ +++|.++++.+...|+ +|+.++++. ++.+.+ .++ +.. . ..|-.+ ++...+.+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~ 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS-DEEITACFETIKE 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHHHHH
Confidence 4689999986 5999999988888999 999887643 233333 233 211 1 134333 1233333333322
Q ss_pred --CCccEEEecCC
Q 025257 139 --GGVDYSFECIG 149 (255)
Q Consensus 139 --~~~d~v~d~~g 149 (255)
|.+|+++++.|
T Consensus 84 ~~g~ld~lv~nag 96 (257)
T PRK08594 84 EVGVIHGVAHCIA 96 (257)
T ss_pred hCCCccEEEECcc
Confidence 37999998876
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=47.22 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc---CCcEEeCCCCCCchHHHHHHhhcCCCccEE
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF---GVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~---g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
.++++++|+|+|++|.+.+..+...|+ +|+++.+++++.+.+ +++ +....+... + .....+|+|
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~-------~----~~~~~~Div 182 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFSMD-------E----LPLHRVDLI 182 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEechh-------h----hcccCccEE
Confidence 457899999999999999988888898 999999988776555 333 221122111 1 111258999
Q ss_pred EecCCcH
Q 025257 145 FECIGNV 151 (255)
Q Consensus 145 ~d~~g~~ 151 (255)
++|++..
T Consensus 183 Inatp~g 189 (270)
T TIGR00507 183 INATSAG 189 (270)
T ss_pred EECCCCC
Confidence 9998863
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=47.16 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---c--CCcE---EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N---F--GVTE---FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~---~--g~~~---vi~~~~~~~~~~~~i~~~~~- 138 (255)
.+++++|+|+ |++|..+++.+...|+ +|+++++++++.+.+. + . +... ..|..+ +..+.+.+.+...
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSD-DEDRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHHHH
Confidence 4689999997 8999999999999999 9999999887655442 2 1 2211 123332 1223333332221
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+++|+++.+.|.
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 379999999984
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.015 Score=45.96 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=66.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~ 136 (255)
|....+..+.++||-.|.| .|..++.+++..+ ..+|+.++.+++..+.+++ .|...-+.... .+..+.+.++
T Consensus 60 L~~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~--gda~~~L~~l 136 (234)
T PLN02781 60 LSMLVKIMNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ--SDALSALDQL 136 (234)
T ss_pred HHHHHHHhCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHH
Confidence 4455667778899999975 3666667777653 3399999999988777743 45322111111 3333333333
Q ss_pred c----CCCccEEEecCCc---HHHHHHHHHHhccCCceEEEE
Q 025257 137 T----DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 137 ~----~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~ 171 (255)
. .+.||+||--... ...++.+++.+++| |.++.-
T Consensus 137 ~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~d 177 (234)
T PLN02781 137 LNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAFD 177 (234)
T ss_pred HhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEEE
Confidence 1 2379999843321 33478889999996 876653
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.01 Score=47.01 Aligned_cols=79 Identities=24% Similarity=0.295 Sum_probs=50.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
.+.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+ ++.+... + .|-.+ +..+.+.+.+... +
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRD-RAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 4578999997 9999999988888999 999999986554333 2333221 1 23322 1223333332221 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|.++.+.|.
T Consensus 83 ~~d~vi~~ag~ 93 (251)
T PRK12826 83 RLDILVANAGI 93 (251)
T ss_pred CCCEEEECCCC
Confidence 68999988764
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.032 Score=44.71 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=67.8
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCC
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~ 140 (255)
+.......++++||-.|+|. |..+..+++.. +. +|++++.++.-.+.+++.+.+.+. .+.. .+. ..+.
T Consensus 21 ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~~------~d~~-~~~--~~~~ 89 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDART------GDVR-DWK--PKPD 89 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEEE------cChh-hCC--CCCC
Confidence 34556677889999999875 77777777765 56 999999999888888776654332 1221 111 1237
Q ss_pred ccEEEecCC------cHHHHHHHHHHhccCCceEEEE
Q 025257 141 VDYSFECIG------NVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 141 ~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
||+|+-... ....+..+.+.|+++ |+++..
T Consensus 90 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ 125 (255)
T ss_pred ceEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence 999985332 233478888999997 998765
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.026 Score=46.15 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=49.4
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHH----HHhcCCcE-E--eCCCCCCchHHHHHHhhcC
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDR----AKNFGVTE-F--VNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~----~~~~g~~~-v--i~~~~~~~~~~~~i~~~~~ 138 (255)
..++.++||+|+ |++|...++.+...|+ +|+.+.+++++ .+. ++..+... + .|-.+ +..+.+.+.+...
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~i~~ 120 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSD-EAFCKDAVEETVR 120 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHH
Confidence 335689999997 9999999988888999 99998876532 222 22233221 1 23332 1223232332211
Q ss_pred --CCccEEEecCCc
Q 025257 139 --GGVDYSFECIGN 150 (255)
Q Consensus 139 --~~~d~v~d~~g~ 150 (255)
+.+|+++.+.|.
T Consensus 121 ~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 121 ELGRLDILVNNAAF 134 (290)
T ss_pred HcCCCCEEEECCcc
Confidence 268999988774
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.013 Score=45.98 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHH---hhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLV---DLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~---~~~~ 138 (255)
++++++|+|+ +++|.+.+..+...|+ +|+.+.+++++.+.+ ++.+... ..|..+ ++.+.+.+. +..+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS-QESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 4679999998 8999999988888999 999999988776554 2334321 123332 122322222 2222
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+.+|+++++.|
T Consensus 82 ~~iD~li~nag 92 (227)
T PRK08862 82 RAPDVLVNNWT 92 (227)
T ss_pred CCCCEEEECCc
Confidence 26999999886
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.034 Score=46.54 Aligned_cols=102 Identities=17% Similarity=0.077 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-c----EEeCCCCC---CchHHHHHHhhcCCC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV-T----EFVNPKDH---DKPIQQVLVDLTDGG 140 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~----~vi~~~~~---~~~~~~~i~~~~~~~ 140 (255)
...++|||.|+| .|.++..+++..+..+|++++.+++-.+.+++... . ..++.... -.+-.+.+.+ +.+.
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PSSL 226 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-cCCC
Confidence 344699999976 36677788887665599999999998888875210 0 00000000 0222333333 2337
Q ss_pred ccEEE-ecCCc----------HHHHHHHHHHhccCCceEEEEcc
Q 025257 141 VDYSF-ECIGN----------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 141 ~d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
||+|+ |.... ..-++.+.+.|+++ |.++.-..
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQSN 269 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence 99998 54221 12367888899997 98876643
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.016 Score=45.77 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=48.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC--CcE-EeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG--VTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g--~~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+.+.+ ... ..|-.+ .+++.+.+.+.. ...|.++.+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~-~~~d~~i~~ 78 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQSANIFTLAFDVTD-HPGTKAALSQLP-FIPELWIFN 78 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCCCeEEEeeCCC-HHHHHHHHHhcc-cCCCEEEEc
Confidence 57899997 9999999988888999 9999999888777665433 221 233332 133333333321 235666655
Q ss_pred CC
Q 025257 148 IG 149 (255)
Q Consensus 148 ~g 149 (255)
.|
T Consensus 79 ag 80 (240)
T PRK06101 79 AG 80 (240)
T ss_pred Cc
Confidence 54
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.03 Score=45.85 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=61.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc--chHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP--KKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~--~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++.++. ++.+.+ ++.+... ..|-.+ ++.+.+.+.+...
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD-EKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 5679999997 9999999999999999 998877543 233333 2233221 123332 1223333333222
Q ss_pred -CCccEEEecCCcH-----------H---------------HHHHHHHHhccCCceEEEEccC
Q 025257 139 -GGVDYSFECIGNV-----------S---------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 139 -~~~d~v~d~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++|+++.+.|.. . .++..++.++.+ |+++.++..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~iv~iSS~ 187 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKG-ASIITTSSI 187 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcC-CEEEEECCc
Confidence 3689999887631 0 133444555665 899988764
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.012 Score=47.55 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=51.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCc-EE--eCCCCCCchHHHHHHhhcC--CCccE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVT-EF--VNPKDHDKPIQQVLVDLTD--GGVDY 143 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v--i~~~~~~~~~~~~i~~~~~--~~~d~ 143 (255)
+.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+.+ .+.. .+ .|..+ +..+.+.+..... +++|.
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d~ 80 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTD-RAAVFAAVETAVEHFGRLDI 80 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 468999997 9999999998888899 99999998877666543 2211 11 23322 1233333332211 36899
Q ss_pred EEecCCc
Q 025257 144 SFECIGN 150 (255)
Q Consensus 144 v~d~~g~ 150 (255)
++.+.|.
T Consensus 81 vi~~ag~ 87 (275)
T PRK08263 81 VVNNAGY 87 (275)
T ss_pred EEECCCC
Confidence 9999884
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0048 Score=45.10 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=57.6
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCC----CchHHHHHHhhcCCCccEEEecCC
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH----DKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~----~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
|+|.|+|++|...+..++..|. +|..+.+++ +.+.+++.|........+. +...... ....+.+|++|-|+-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP--SADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc--hhccCCCcEEEEEec
Confidence 6899999999998888888999 999999887 7777776553211111000 0000000 111137999999987
Q ss_pred cHHHHHHHHH----HhccCCceEEEEcc
Q 025257 150 NVSVMRAALE----CCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~~~~~~~~~----~l~~~~G~~v~~g~ 173 (255)
... .+.+++ .+.++ ..++.+.+
T Consensus 77 a~~-~~~~l~~l~~~~~~~-t~iv~~qN 102 (151)
T PF02558_consen 77 AYQ-LEQALQSLKPYLDPN-TTIVSLQN 102 (151)
T ss_dssp GGG-HHHHHHHHCTGEETT-EEEEEESS
T ss_pred ccc-hHHHHHHHhhccCCC-cEEEEEeC
Confidence 655 444444 45554 56776644
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.014 Score=46.23 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=30.2
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
+.+|+|.|+|++|..+++.+...|..+++.++.+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3789999999999999999999999888888754
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.019 Score=45.63 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=30.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
.+.+|+|.|+|++|..+++.+...|..++..++.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 44799999999999999999999999888888754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.032 Score=44.71 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=66.2
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-EEeCCCCCCchHHHHHHhhcCC-
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDG- 139 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~i~~~~~~- 139 (255)
+.....+.++++||-+|+|. |..+..+++..+..+|++++.++...+.+++.... .++. .+.. ++...
T Consensus 23 ll~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~-----~d~~----~~~~~~ 92 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVE-----ADIA----SWQPPQ 92 (258)
T ss_pred HHhhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEE-----Cchh----ccCCCC
Confidence 34556678889999999874 77777888776433999999999888877654221 1221 1111 11122
Q ss_pred CccEEEecCC------cHHHHHHHHHHhccCCceEEEEc
Q 025257 140 GVDYSFECIG------NVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 140 ~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.+|+|+-... ....+..+.+.|+++ |+++...
T Consensus 93 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~~ 130 (258)
T PRK01683 93 ALDLIFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQM 130 (258)
T ss_pred CccEEEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEEC
Confidence 7999975332 233578899999997 9987753
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=53.88 Aligned_cols=76 Identities=25% Similarity=0.333 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc---------------------hHHHHHhcCCcEEeCCCCC-C
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK---------------------KFDRAKNFGVTEFVNPKDH-D 126 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~---------------------~~~~~~~~g~~~vi~~~~~-~ 126 (255)
..+++|+|.|+|+.|+.++..++..|. +|+++++.+. ..+.++++|++...+..-. +
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 403 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD 403 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence 357899999999999999999999999 9999986543 3455567786644443210 0
Q ss_pred chHHHHHHhhcCCCccEEEecCCc
Q 025257 127 KPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 127 ~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
..+. .+. ..||.||.++|.
T Consensus 404 i~~~-~~~----~~~DavilAtGa 422 (654)
T PRK12769 404 ISLE-SLL----EDYDAVFVGVGT 422 (654)
T ss_pred CCHH-HHH----hcCCEEEEeCCC
Confidence 1121 111 168999998885
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.013 Score=46.41 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=50.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-EE--eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT-EF--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
++.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+. +.+.. .+ .|..+ +..+.+.+..... +
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD-RDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4678999997 9999999999999999 9999998877655442 22321 12 23322 1223333333221 2
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|+++.+.|
T Consensus 80 ~~d~vi~~ag 89 (250)
T TIGR03206 80 PVDVLVNNAG 89 (250)
T ss_pred CCCEEEECCC
Confidence 6899999887
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.046 Score=43.99 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CC----c--EEeCCCCCCchHHHHHHhhcCCCc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GV----T--EFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~----~--~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
.+.++||++|+|+ |..+..+++.....++++++.+++-.+.+++. +. + .++. .+..+.+.+. .+.+
T Consensus 65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~-----~Da~~~l~~~-~~~y 137 (262)
T PRK04457 65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE-----ADGAEYIAVH-RHST 137 (262)
T ss_pred CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE-----CCHHHHHHhC-CCCC
Confidence 3557899999875 77788888877433999999999988888763 21 1 1221 3333334332 2379
Q ss_pred cEEE-ecCCc---------HHHHHHHHHHhccCCceEEEE
Q 025257 142 DYSF-ECIGN---------VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 142 d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~ 171 (255)
|+|+ |+... ...++.+.+.|+++ |.++.-
T Consensus 138 D~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvin 176 (262)
T PRK04457 138 DVILVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVVN 176 (262)
T ss_pred CEEEEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEEE
Confidence 9997 54321 24478889999997 998763
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=46.29 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+ +..+... . .|-.+ +..+.+.+..... +
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTH-KQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCC-HHHHHHHHHHHHHhcC
Confidence 4678999997 9999999998888999 999999887665443 2223221 1 23332 1223322322211 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++.+.|.
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 69999998874
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.016 Score=46.20 Aligned_cols=79 Identities=22% Similarity=0.324 Sum_probs=49.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhcCCcE-E--eCCCCCCchHHHHHHhhcC--CCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVTE-F--VNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~--~~~~~~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
++.++||+|+ |++|.+.++.+...|+ +|+.+++++. ..+.+++.+... . .|-.+ .++..+.+.+... +.+
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~~ 86 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRK-IDGIPALLERAVAEFGHI 86 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhCCC
Confidence 4679999997 8999999999999999 9988876432 223334444221 1 23222 1233333333221 269
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++++.|.
T Consensus 87 D~li~~Ag~ 95 (253)
T PRK08993 87 DILVNNAGL 95 (253)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.031 Score=43.97 Aligned_cols=102 Identities=26% Similarity=0.373 Sum_probs=67.6
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhc----CCc-EEeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNF----GVT-EFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~~~i~~ 135 (255)
+.+...+.++++||..|+|. |..+..+++..+ ..++++++.+++..+.+++. +.. .++.... .++ .
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~--~~~-----~ 82 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA--DGL-----P 82 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc--ccC-----C
Confidence 44667888999999999976 888888888773 23899999998888877554 111 1111110 111 1
Q ss_pred hcCCCccEEEecC------CcHHHHHHHHHHhccCCceEEEEc
Q 025257 136 LTDGGVDYSFECI------GNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 136 ~~~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
...+.||+|+-.. .....++...++|+++ |.++...
T Consensus 83 ~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~ 124 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLD 124 (241)
T ss_pred CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEe
Confidence 1223789887432 1233578999999997 9988764
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=46.98 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC--cEEeCCCCCCchHHHHHHhhcC
Q 025257 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV--TEFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 61 ~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~--~~vi~~~~~~~~~~~~i~~~~~ 138 (255)
.+....++.++.+||-.|+|. |..+..+++..++ +|++++.+++..+.+++... ..+ .... .+..+ .....
T Consensus 43 ~~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i-~~~~--~D~~~--~~~~~ 115 (263)
T PTZ00098 43 KILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKI-EFEA--NDILK--KDFPE 115 (263)
T ss_pred HHHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCce-EEEE--CCccc--CCCCC
Confidence 355677889999999999864 5566777777788 99999999888887765321 111 0000 11110 01112
Q ss_pred CCccEEEec--C------CcHHHHHHHHHHhccCCceEEEEcc
Q 025257 139 GGVDYSFEC--I------GNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 139 ~~~d~v~d~--~------g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.||+|+.. . .....++.+.+.|+++ |+++....
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG-G~lvi~d~ 157 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN-GILLITDY 157 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 379999852 1 1133477888999997 99987754
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.032 Score=47.40 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=56.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|.|+|.|.+|...++.++..|. +|++.+++....+..++.|.... .++.+.+. ..|+|+-++.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvV~l~lP 257 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGLTYH-------VSFDSLVS-----VCDVVTIHCP 257 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCceec-------CCHHHHhh-----cCCEEEEcCC
Confidence 56789999999999999999999999 99999987644444444553211 22222222 3677765554
Q ss_pred c-HH---HH-HHHHHHhccCCceEEEEc
Q 025257 150 N-VS---VM-RAALECCHKGWGTSVIVG 172 (255)
Q Consensus 150 ~-~~---~~-~~~~~~l~~~~G~~v~~g 172 (255)
- +. .+ +..+..|+++ ..+|.++
T Consensus 258 lt~~T~~li~~~~l~~mk~g-a~lIN~a 284 (385)
T PRK07574 258 LHPETEHLFDADVLSRMKRG-SYLVNTA 284 (385)
T ss_pred CCHHHHHHhCHHHHhcCCCC-cEEEECC
Confidence 2 21 11 3445566664 5555554
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.02 Score=47.04 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH---HHHhcC-Cc---EEe--CCCCCCchHHHHHHhhcCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD---RAKNFG-VT---EFV--NPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~---~~~~~g-~~---~vi--~~~~~~~~~~~~i~~~~~~ 139 (255)
.+..|+|+|| |-+|...+..+..+|+ +|.+++|++++.+ .++++. +. .++ |-.+ +..|.+.+.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY-~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d-~~sf~~ai~----- 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY-TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLD-EGSFDKAID----- 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC-EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccc-cchHHHHHh-----
Confidence 5689999998 9999999999999999 9999999988643 366654 22 122 1111 233444443
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
|+|.||.+...
T Consensus 78 gcdgVfH~Asp 88 (327)
T KOG1502|consen 78 GCDGVFHTASP 88 (327)
T ss_pred CCCEEEEeCcc
Confidence 69999986653
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.018 Score=46.58 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=54.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc------EEeCCCCCCch---HHHHHHh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT------EFVNPKDHDKP---IQQVLVD 135 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~------~vi~~~~~~~~---~~~~i~~ 135 (255)
.++.+||+|+ .++|.+.+..+...|+ +|+.+.+++++.+..+. .+.. .+.|..+ +++ +.+...+
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSK-EVDVEKLVEFAVE 84 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCC-HHHHHHHHHHHHH
Confidence 5688999987 8999999999999999 99999999887666532 2221 2233332 122 2333333
Q ss_pred hcCCCccEEEecCCc
Q 025257 136 LTDGGVDYSFECIGN 150 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~ 150 (255)
...|+.|+.+++.|.
T Consensus 85 ~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGA 99 (270)
T ss_pred HhCCCCCEEEEcCCc
Confidence 334579999998874
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.013 Score=46.80 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=49.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h----cCCc--EE--eCCCCCCchHHHHHHhhcC--
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N----FGVT--EF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~----~g~~--~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
++++||+|+ |.+|...++.+...|+ +|+.++++..+.+.+. + .+.. .. .|..+ +......+.+...
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS-EQSVLALSRGVDEIF 79 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 468999997 8999999999999999 9999998876554432 1 2211 11 23222 1223222333211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|.++++.|.
T Consensus 80 ~~id~vv~~ag~ 91 (259)
T PRK12384 80 GRVDLLVYNAGI 91 (259)
T ss_pred CCCCEEEECCCc
Confidence 378999998873
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.014 Score=47.22 Aligned_cols=79 Identities=18% Similarity=0.313 Sum_probs=49.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-------HH----HHHhcCCcE---EeCCCCCCchHHHHHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-------FD----RAKNFGVTE---FVNPKDHDKPIQQVLV 134 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-------~~----~~~~~g~~~---vi~~~~~~~~~~~~i~ 134 (255)
++.+++|+|+ |++|...++.+...|+ +|++++++.++ .+ .++..+... ..|..+ ++.+.+.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~ 82 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD-EDQVAAAVA 82 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHH
Confidence 4578999997 9999999998889999 99999986542 11 122333321 134333 122333233
Q ss_pred hhcC--CCccEEEecCCc
Q 025257 135 DLTD--GGVDYSFECIGN 150 (255)
Q Consensus 135 ~~~~--~~~d~v~d~~g~ 150 (255)
+... +.+|+++++.|.
T Consensus 83 ~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 83 KAVERFGGIDICVNNASA 100 (273)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 2211 269999998874
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.014 Score=44.68 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=60.9
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhc
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
+.......++.+||-.|+|. |..+..+++ .|. +|++++.+++-.+.+++ .+.. +.... .++.. . ..
T Consensus 22 l~~~~~~~~~~~vLDiGcG~-G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~--~d~~~-~-~~- 91 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQ-GRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLP--LRTDA--YDINA-A-AL- 91 (195)
T ss_pred HHHHhccCCCCcEEEeCCCC-CHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEe--ccchh-c-cc-
Confidence 44445555667999999864 777777776 588 99999999877766643 2322 11100 11100 0 11
Q ss_pred CCCccEEEecC-----Cc---HHHHHHHHHHhccCCceEEEEcc
Q 025257 138 DGGVDYSFECI-----GN---VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 ~~~~d~v~d~~-----g~---~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.+|+|+.+. .. +..++.+.+.|+++ |.++.+..
T Consensus 92 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~~~ 134 (195)
T TIGR00477 92 NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIVAA 134 (195)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEEEe
Confidence 12699997542 11 23477888899997 98655533
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.012 Score=46.78 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=52.6
Q ss_pred CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc--EE--eCCCC-CCchHHHHHHhh
Q 025257 67 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVT--EF--VNPKD-HDKPIQQVLVDL 136 (255)
Q Consensus 67 ~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~--~v--i~~~~-~~~~~~~~i~~~ 136 (255)
...++.+++|+|+ |.+|...++.+...|+ +|++++++.++.+.+ ++.+.. .+ .|... ...++.+.+..+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence 3557889999997 9999999988888999 999999987664443 233321 11 22211 012333322222
Q ss_pred cC--CCccEEEecCCc
Q 025257 137 TD--GGVDYSFECIGN 150 (255)
Q Consensus 137 ~~--~~~d~v~d~~g~ 150 (255)
.. +.+|.++.+.+.
T Consensus 87 ~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 87 EEQFGRLDGVLHNAGL 102 (247)
T ss_pred HHHhCCCCEEEECCcc
Confidence 22 268999988764
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.022 Score=46.45 Aligned_cols=95 Identities=28% Similarity=0.451 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-cEE-eCCCCCCchHHHHHHhhcCCCc
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGV-TEF-VNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v-i~~~~~~~~~~~~i~~~~~~~~ 141 (255)
.+++++||=.|+|+ |.+++-.++ +|+++|++++.++...+.+++ .|. +.+ +... .+. ..+.|
T Consensus 159 ~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~---~~~-------~~~~~ 226 (295)
T PF06325_consen 159 VKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS---EDL-------VEGKF 226 (295)
T ss_dssp SSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT---SCT-------CCS-E
T ss_pred ccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe---ccc-------ccccC
Confidence 67889999999753 555554444 698889999999876666543 232 122 2111 111 11479
Q ss_pred cEEEecCCcHH---HHHHHHHHhccCCceEEEEccCC
Q 025257 142 DYSFECIGNVS---VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 142 d~v~d~~g~~~---~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
|+|+-+.-... ......+.++++ |.+++-|...
T Consensus 227 dlvvANI~~~vL~~l~~~~~~~l~~~-G~lIlSGIl~ 262 (295)
T PF06325_consen 227 DLVVANILADVLLELAPDIASLLKPG-GYLILSGILE 262 (295)
T ss_dssp EEEEEES-HHHHHHHHHHCHHHEEEE-EEEEEEEEEG
T ss_pred CEEEECCCHHHHHHHHHHHHHhhCCC-CEEEEccccH
Confidence 99996655443 244556678897 9999988864
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.017 Score=46.11 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCC--cEE-eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGV--TEF-VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~--~~v-i~~~~~~~~~~~~i~~~~~--~ 139 (255)
++.+++|+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++.+. ..+ .|..+ +..+...+.+... +
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD-EEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence 5789999997 9999999988888999 999999987665443 23342 211 23332 1233333333222 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|.++.+.|.
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 68999998884
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.028 Score=40.70 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=28.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
+|+|.|+|++|...++.+...|..++..++.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48899999999999999999999888888754
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.022 Score=46.37 Aligned_cols=80 Identities=26% Similarity=0.247 Sum_probs=49.7
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc---------chHHHH----HhcCCcE-E--eCCCCCCchHHH
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP---------KKFDRA----KNFGVTE-F--VNPKDHDKPIQQ 131 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~---------~~~~~~----~~~g~~~-v--i~~~~~~~~~~~ 131 (255)
.+++++||+|+ +++|.+.++.+...|+ +|++++++. ++.+.+ ++.+... . .|-.+ ++...+
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~ 81 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD-WDGAAN 81 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC-HHHHHH
Confidence 45789999997 8999999998888999 998887654 333222 2223221 1 23322 122333
Q ss_pred HHHhhcC--CCccEEEecCCc
Q 025257 132 VLVDLTD--GGVDYSFECIGN 150 (255)
Q Consensus 132 ~i~~~~~--~~~d~v~d~~g~ 150 (255)
.+.+... +.+|+++++.|.
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 3333221 379999998874
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.021 Score=40.93 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=29.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
..+|+|.|+|++|..++..+...|+.+++.++..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999999888888753
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.018 Score=45.46 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc-EE--eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVT-EF--VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
++.++||+|+ |.+|..+++.+...|+ .|+...++.++.+.+ .+.+.. .+ .|-.+ .+.+.+.+.+... +++|
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id 82 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSD-RDEVKALGQKAEADLEGVD 82 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4679999997 9999999998888999 898888877666554 333321 11 23222 1223222222211 3699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
.++.+.|.
T Consensus 83 ~vi~~ag~ 90 (245)
T PRK12936 83 ILVNNAGI 90 (245)
T ss_pred EEEECCCC
Confidence 99999874
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.017 Score=48.19 Aligned_cols=35 Identities=34% Similarity=0.401 Sum_probs=31.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
...+|+|.|+|++|..+++.+...|..++..++.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34789999999999999999999999899999875
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.013 Score=45.49 Aligned_cols=101 Identities=21% Similarity=0.175 Sum_probs=62.4
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHhhc
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
+....+++++++||-.|+|. |..+..+++. +. +|+.++.+++..+.++ +.+...+ +... .+..+... .
T Consensus 70 l~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~-~~-~v~~vd~~~~~~~~a~~~~~~~~~~~v-~~~~--~d~~~~~~--~ 141 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGS-GYQAAVLAHL-VR-RVFSVERIKTLQWEAKRRLKQLGLHNV-SVRH--GDGWKGWP--A 141 (212)
T ss_pred HHHhcCCCCCCEEEEECCCc-cHHHHHHHHH-hC-EEEEEeCCHHHHHHHHHHHHHCCCCce-EEEE--CCcccCCC--c
Confidence 34667889999999999864 5555555554 34 8999999887766653 3343321 1110 11111111 1
Q ss_pred CCCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 138 DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.+.||+|+-........+...+.|+++ |+++..
T Consensus 142 ~~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~ 174 (212)
T PRK00312 142 YAPFDRILVTAAAPEIPRALLEQLKEG-GILVAP 174 (212)
T ss_pred CCCcCEEEEccCchhhhHHHHHhcCCC-cEEEEE
Confidence 137999986555455467788899997 987654
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.049 Score=43.18 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=60.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chH----HHHHhcCCcE-E--eCCCCCCchHHHHHHhhcC--C
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKF----DRAKNFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~----~~~~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
+.++||+|+ |.+|...++.+...|+ +|+...++. ++. +.+++.+... . .|..+ +..+...+.+... +
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST-REGCETLAKATIDRYG 83 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC-HHHHHHHHHHHHHHcC
Confidence 578999997 8999999988888999 887766432 222 1223333321 1 23332 1223222332221 2
Q ss_pred CccEEEecCCc----------HH---------------HHHHHHHHhccCCceEEEEccCC
Q 025257 140 GVDYSFECIGN----------VS---------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 140 ~~d~v~d~~g~----------~~---------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
++|.++.+.|. .. ..+.+.+.++.. |+++.++...
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~ 143 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVA 143 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchh
Confidence 68999998873 10 133445556675 8999987753
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.017 Score=46.38 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=48.4
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcEE--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g--~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
.++.++|+|+ + ++|.+.++.+...|+ +|+...++++..+.+ ++.|.... .|-.+ ++...+.+.+...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTN-PKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCC-HHHHHHHHHHHHHHc
Confidence 5688999997 4 799999988888999 999888764222222 22343222 34333 1233333333222
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+.+|+++++.|
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 36999998876
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.017 Score=46.16 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=49.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc---EEeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVT---EFVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~---~vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
.+.++||+|+ |++|.+.++.+...|+ +|++++++ ++.+.+ .+.+.. ...|-.+ ++.+...+.+... +
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTK-PESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4689999998 9999999999999999 99999877 333332 233322 1223333 1222222332221 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++.+.|.
T Consensus 91 ~id~li~~ag~ 101 (258)
T PRK06935 91 KIDILVNNAGT 101 (258)
T ss_pred CCCEEEECCCC
Confidence 68999998874
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.022 Score=41.67 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE-EeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.++.+++|.|+|.+|...++.+...|..+|++.++++++.+.+ ++++... .... .+..+.+ +++|+|+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~Dvvi~ 87 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAY----LDLEELL-----AEADLIIN 87 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceee----cchhhcc-----ccCCEEEe
Confidence 4568999999999999999998888633899999988776664 4455321 0111 1121111 26999999
Q ss_pred cCCcHH
Q 025257 147 CIGNVS 152 (255)
Q Consensus 147 ~~g~~~ 152 (255)
|++...
T Consensus 88 ~~~~~~ 93 (155)
T cd01065 88 TTPVGM 93 (155)
T ss_pred CcCCCC
Confidence 987654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.053 Score=38.38 Aligned_cols=91 Identities=16% Similarity=0.273 Sum_probs=56.0
Q ss_pred EEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCCcchH---HHHHhcCCcEEeCCCCCCchHHHHH--------------
Q 025257 74 VAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPKKF---DRAKNFGVTEFVNPKDHDKPIQQVL-------------- 133 (255)
Q Consensus 74 vlI~G~-g~vG~~a~~l~~~~g--~~~v~~~~~~~~~~---~~~~~~g~~~vi~~~~~~~~~~~~i-------------- 133 (255)
|.|+|+ |++|..++++.+... + +|++..-...-. +.++++.+..+.-.+ +...+.+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~---~~~~~~l~~~~~~~~~~~~v~ 76 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIAD---EEAYEELKKALPSKGPGIEVL 76 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESS---HHHHHHHHHHHHHTTSSSEEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcC---HHHHHHHHHHhhhcCCCCEEE
Confidence 578898 999999999999987 5 788776543322 223667777665444 2222222
Q ss_pred ------HhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEE
Q 025257 134 ------VDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSV 169 (255)
Q Consensus 134 ------~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v 169 (255)
.+.... .+|+|+.+..+-..+.-.+..++.+ -++.
T Consensus 77 ~G~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g-k~ia 118 (129)
T PF02670_consen 77 SGPEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAG-KDIA 118 (129)
T ss_dssp ESHHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTT-SEEE
T ss_pred eChHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCC-CeEE
Confidence 222222 6888888777766678888888874 4443
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.017 Score=46.78 Aligned_cols=79 Identities=25% Similarity=0.294 Sum_probs=57.5
Q ss_pred CCCCEEEEEcC-ChHHHHHH-HHHHHcCCCeEEEEcCCcchHHHHHh-c----CC---cEEeCCCCCCchHHHHHHhhcC
Q 025257 69 EPGSIVAVFGL-GTVGLAVA-EGAKAAGASRVIGIDIDPKKFDRAKN-F----GV---TEFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~-~l~~~~g~~~v~~~~~~~~~~~~~~~-~----g~---~~vi~~~~~~~~~~~~i~~~~~ 138 (255)
+-|++.+|+|+ .++|.+-+ +||+ +|. +|+.+.|+++|++..++ + ++ ..++|+.+.+. ..+.+++...
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~-~ye~i~~~l~ 123 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDE-VYEKLLEKLA 123 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCch-hHHHHHHHhc
Confidence 34689999998 79998865 5555 999 99999999999988743 2 32 23567766222 3556666666
Q ss_pred C-CccEEEecCCc
Q 025257 139 G-GVDYSFECIGN 150 (255)
Q Consensus 139 ~-~~d~v~d~~g~ 150 (255)
+ .+-+.++++|.
T Consensus 124 ~~~VgILVNNvG~ 136 (312)
T KOG1014|consen 124 GLDVGILVNNVGM 136 (312)
T ss_pred CCceEEEEecccc
Confidence 6 88888899985
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.016 Score=46.05 Aligned_cols=77 Identities=25% Similarity=0.318 Sum_probs=50.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--EE-eCCCCCCchHHHHHHhhc--CCCc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT--EF-VNPKDHDKPIQQVLVDLT--DGGV 141 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v-i~~~~~~~~~~~~i~~~~--~~~~ 141 (255)
.++||+|+ |.+|...+..+...|. +|+++++++++.+.+.+ .+.. .+ .|..+ .+.+...+.+.. .++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK-EDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhcCCC
Confidence 57999997 9999999988888999 99999998877665533 2221 11 23333 122323222221 1268
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++.+.+.
T Consensus 80 d~vi~~a~~ 88 (255)
T TIGR01963 80 DILVNNAGI 88 (255)
T ss_pred CEEEECCCC
Confidence 999987763
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.009 Score=50.01 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=63.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhcCCCccEE
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
+++++||-.|+|. |..+..+++..|+ +|++++.++...+.+++ .|...-+.... .+.. .+ .+..+.||+|
T Consensus 117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~--~D~~-~~-~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQV--ADAL-NQ-PFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE--cCcc-cC-CCCCCCccEE
Confidence 7889999999874 6777888888898 99999999987776643 23211000000 1110 00 1122379999
Q ss_pred EecCCc------HHHHHHHHHHhccCCceEEEEcc
Q 025257 145 FECIGN------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 145 ~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+-.... ...+..+.+.|++| |+++....
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~~ 224 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAAPG-GRIIIVTW 224 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 853221 23478899999997 99988754
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.021 Score=47.74 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
.+.+|+|.|+|++|..+++.+...|..++..++.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 346899999999999999999999998888888753
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.017 Score=49.15 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=31.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
++.+|+|.|+|++|..++..+...|..+++.++.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999999999999999999999889999876
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.026 Score=42.18 Aligned_cols=39 Identities=31% Similarity=0.282 Sum_probs=33.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 109 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~ 109 (255)
++..++|+|+ +++|...+..+...|+ +|++++++.+..+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~ 54 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ 54 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 5679999997 7999999988888999 9999998766543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.056 Score=43.83 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=66.1
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCcE-Ee-CCCCC--CchHHHHHHhhcCCCc
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTE-FV-NPKDH--DKPIQQVLVDLTDGGV 141 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~~-vi-~~~~~--~~~~~~~i~~~~~~~~ 141 (255)
...| ++|||.|+|. |..+-.++++....++++++.+++=.+++++. +... .. |++-. ..+-.+-+++... +|
T Consensus 74 h~~p-k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~f 150 (282)
T COG0421 74 HPNP-KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KF 150 (282)
T ss_pred CCCC-CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cC
Confidence 3445 5999998764 66777888888877999999999988888763 2111 01 11110 0223334444433 79
Q ss_pred cEEE-ecCCc---------HHHHHHHHHHhccCCceEEEE
Q 025257 142 DYSF-ECIGN---------VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 142 d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~ 171 (255)
|+|+ |+... +.-++..-++|+++ |.++.-
T Consensus 151 DvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~-Gi~v~q 189 (282)
T COG0421 151 DVIIVDSTDPVGPAEALFTEEFYEGCRRALKED-GIFVAQ 189 (282)
T ss_pred CEEEEcCCCCCCcccccCCHHHHHHHHHhcCCC-cEEEEe
Confidence 9998 65544 33378888999997 887766
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.013 Score=46.94 Aligned_cols=103 Identities=17% Similarity=0.299 Sum_probs=62.8
Q ss_pred CCCEEEEEcCC---hHHHHHHHHHHHcCCCeEEEEcCCcchHH---HH-HhcCCcEE--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGLG---TVGLAVAEGAKAAGASRVIGIDIDPKKFD---RA-KNFGVTEF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~g---~vG~~a~~l~~~~g~~~v~~~~~~~~~~~---~~-~~~g~~~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|++ ++|.+.++.+...|+ +|+.++++++..+ .+ ++++.... .|-.+ +++..+.+.+...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVRE-PGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCC-HHHHHHHHHHHHHHc
Confidence 46899999863 899999999989999 9999988754332 22 23342222 23222 1233333332221
Q ss_pred CCccEEEecCCcH--------------H---------------HHHHHHHHhccCCceEEEEccCC
Q 025257 139 GGVDYSFECIGNV--------------S---------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 139 ~~~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
|.+|+++++.|.. . ..+..+..++.+ |+++.++...
T Consensus 87 g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-g~Ii~iss~~ 151 (258)
T PRK07533 87 GRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNG-GSLLTMSYYG 151 (258)
T ss_pred CCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccC-CEEEEEeccc
Confidence 3799999988731 0 124455666665 8888876543
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.021 Score=45.87 Aligned_cols=79 Identities=23% Similarity=0.425 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
++.+++|+|+ +++|...+..+...|+ +|+++.+++++.+.+ ++.|... ..|-.+ +....+.+.+... +
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD-EDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhCC
Confidence 5678999997 8999999988888999 899999887765443 2334321 123332 1222222322211 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++.+.|.
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999998874
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.025 Score=43.46 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=30.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
.+.+|+|.|+|++|.-.++.+...|.+++..++..
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 44789999999999999999999999888888754
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0091 Score=44.17 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=48.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC--cchHHHH----HhcCCcE-Ee--CCCCCCchHHHHHHhhc--CC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID--PKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~--~~~~~~~----~~~g~~~-vi--~~~~~~~~~~~~i~~~~--~~ 139 (255)
++++|+|+ +++|...++.+...|..+|+.+.++ .++.+.+ +..+... ++ |..+ .+.+...+.+.. .+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSD-PESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTS-HHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 36899997 9999999988888877577888887 3433333 3344321 12 2222 123333333333 23
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++.+.|.
T Consensus 80 ~ld~li~~ag~ 90 (167)
T PF00106_consen 80 PLDILINNAGI 90 (167)
T ss_dssp SESEEEEECSC
T ss_pred ccccccccccc
Confidence 79999998885
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.051 Score=43.18 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=61.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH----HhcCCcE-E--eCCCCCCch---HHHHHHh--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRA----KNFGVTE-F--VNPKDHDKP---IQQVLVD-- 135 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~-~~~~~~~~~----~~~g~~~-v--i~~~~~~~~---~~~~i~~-- 135 (255)
.+.+++|+|+ |++|.++++.+...|+ +|++.. +++++.+.+ ++.+... . .|-.+ ... +.+.+.+
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 80 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLES-LHGVEALYSSLDNEL 80 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCC-HHHHHHHHHHHHHHh
Confidence 4679999997 8999999999999999 888765 444443322 2223221 1 12222 111 2222222
Q ss_pred --hcC-CCccEEEecCCcHH-------------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 136 --LTD-GGVDYSFECIGNVS-------------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 136 --~~~-~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
..+ +++|+++++.|... ..+.+++.+... |+++.++...
T Consensus 81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-g~iv~isS~~ 147 (252)
T PRK12747 81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN-SRIINISSAA 147 (252)
T ss_pred hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC-CeEEEECCcc
Confidence 112 26999999887311 123355566675 8999987754
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.048 Score=45.43 Aligned_cols=94 Identities=19% Similarity=0.140 Sum_probs=64.9
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE------EeCCCC-CCchHHHHHHhhcCCCccEE
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE------FVNPKD-HDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~------vi~~~~-~~~~~~~~i~~~~~~~~d~v 144 (255)
.+|.|+|+|.+|.+.+..+...|. +|.+.++++++.+.+++.+... .+..+- ...+..+.+ ..+|+|
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~-----~~aD~V 78 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL-----AGADFA 78 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH-----cCCCEE
Confidence 369999999999999999988998 9999999888877776542110 000000 002232222 258999
Q ss_pred EecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 145 FECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 145 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+-|+.... ++..++.++++ -.++.+..
T Consensus 79 i~~v~~~~-~~~v~~~l~~~-~~vi~~~~ 105 (328)
T PRK14618 79 VVAVPSKA-LRETLAGLPRA-LGYVSCAK 105 (328)
T ss_pred EEECchHH-HHHHHHhcCcC-CEEEEEee
Confidence 99999887 78888888885 66665643
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.034 Score=47.18 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=37.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 116 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~ 116 (255)
.|++|.|.|.|.+|...++.++..|. +|++.+++....+..++.|+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~ 243 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGA 243 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCc
Confidence 56799999999999999999999999 99999987544444445554
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.015 Score=46.47 Aligned_cols=74 Identities=23% Similarity=0.234 Sum_probs=47.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE-EeCCCCCCchHHH---HHHhhcCCCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQ---VLVDLTDGGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~---~i~~~~~~~~d~v 144 (255)
+++++||+|+ |++|...++.+...|+ +|+++++++++. . ...... ..|-.+ ++...+ .+.+.. +++|++
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~--~-~~~~~~~~~D~~~-~~~~~~~~~~~~~~~-~~id~v 81 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDD--L-PEGVEFVAADLTT-AEGCAAVARAVLERL-GGVDIL 81 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhh--c-CCceeEEecCCCC-HHHHHHHHHHHHHHc-CCCCEE
Confidence 4689999997 9999999999888999 999999875431 1 111111 123333 122222 222222 269999
Q ss_pred EecCC
Q 025257 145 FECIG 149 (255)
Q Consensus 145 ~d~~g 149 (255)
+++.|
T Consensus 82 i~~ag 86 (260)
T PRK06523 82 VHVLG 86 (260)
T ss_pred EECCc
Confidence 99887
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.065 Score=37.09 Aligned_cols=74 Identities=24% Similarity=0.318 Sum_probs=53.4
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
|+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|...+.-.. .-.+.+++..-..++.++-+++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~~i~gd~----~~~~~l~~a~i~~a~~vv~~~~~d~ 74 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVEVIYGDA----TDPEVLERAGIEKADAVVILTDDDE 74 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSEEEES-T----TSHHHHHHTTGGCESEEEEESSSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccccccccc----hhhhHHhhcCccccCEEEEccCCHH
Confidence 5788999999999999999777 999999999999999998866443221 1122333332227899988877655
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.022 Score=45.68 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=48.5
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcEE--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++.+||+|+ +++|.+.++.+...|+ +|+...++++..+.++ +.|.... .|-.+ +++..+.+.+...
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVAS-DDEINQVFADLGKHW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCC-HHHHHHHHHHHHHHh
Confidence 5679999984 4899999999989999 9988866543333332 2342121 23332 2333333333222
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 83 g~iD~lVnnAG~ 94 (261)
T PRK08690 83 DGLDGLVHSIGF 94 (261)
T ss_pred CCCcEEEECCcc
Confidence 379999998864
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.021 Score=45.54 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
.+.++||+|+ +++|...++.+...|+ +++.++++.++.+.+ ++.+... ..|..+ ++...+.+.+... +
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999998889999 999998877665443 2233221 134333 1223333333222 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++.+.|.
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 68999998873
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0095 Score=50.01 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=48.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC----CcEE-eCCCCCCchHHHHHHhhcCC-Cc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG----VTEF-VNPKDHDKPIQQVLVDLTDG-GV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g----~~~v-i~~~~~~~~~~~~i~~~~~~-~~ 141 (255)
++.+|||+|+ |.+|..+++.+...|. +|+++++++...... ..++ ...+ .|-.+ . +.+.+...+ ++
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~---~~~~~~~~~~~~ 76 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD--A---AKLRKAIAEFKP 76 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCC--H---HHHHHHHhhcCC
Confidence 4689999997 9999999999999999 999998776543322 2221 1111 12222 2 223333333 68
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+|+++.+.
T Consensus 77 d~vih~A~~ 85 (349)
T TIGR02622 77 EIVFHLAAQ 85 (349)
T ss_pred CEEEECCcc
Confidence 999998873
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.025 Score=44.00 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
+..+|+|.|+|++|...++.+...|..+++.++.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34689999999999999999999999789998876
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.022 Score=43.15 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=57.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
++++||-.|+|+ |..++.+++.....+|++++.+++..+.++ +.+.+.+ .... .+..+ +. ..+.||+|+
T Consensus 42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i-~~i~--~d~~~-~~--~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNV-EIVN--GRAED-FQ--HEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCe-EEEe--cchhh-cc--ccCCccEEE
Confidence 478999999864 666666666553338999999987665553 3454322 1111 22211 11 123799998
Q ss_pred ecC-Cc-HHHHHHHHHHhccCCceEEEE
Q 025257 146 ECI-GN-VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 146 d~~-g~-~~~~~~~~~~l~~~~G~~v~~ 171 (255)
-.. .. +..++.+.+.|+++ |+++..
T Consensus 115 s~~~~~~~~~~~~~~~~Lkpg-G~lvi~ 141 (181)
T TIGR00138 115 SRALASLNVLLELTLNLLKVG-GYFLAY 141 (181)
T ss_pred ehhhhCHHHHHHHHHHhcCCC-CEEEEE
Confidence 432 22 33356778889997 998866
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.027 Score=49.55 Aligned_cols=70 Identities=29% Similarity=0.294 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc-----hHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccE
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-----KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~-----~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~ 143 (255)
-.+.+|+|+|+|.+|+.++.+++..|. +|++++.++. ..+.+++.|.....+... . . ...+|+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~--~--------~-~~~~D~ 81 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGP--T--------L-PEDTDL 81 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc--c--------c-cCCCCE
Confidence 346799999999999999999999999 9999986542 224456678765544332 1 0 115888
Q ss_pred EEecCCc
Q 025257 144 SFECIGN 150 (255)
Q Consensus 144 v~d~~g~ 150 (255)
|+-+.|.
T Consensus 82 Vv~s~Gi 88 (480)
T PRK01438 82 VVTSPGW 88 (480)
T ss_pred EEECCCc
Confidence 8888775
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.007 Score=46.71 Aligned_cols=101 Identities=21% Similarity=0.322 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHhhc--
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDLT-- 137 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~~~-- 137 (255)
.+..+..+||-+|.+ +|..++++++.+ +. +|+.++.+++..+.++ +.|...-+.... .+..+.+.++.
T Consensus 41 ~~~~~~k~vLEIGt~-~GySal~la~~l~~~g-~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~--gda~~~l~~l~~~ 116 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTF-TGYSALWLAEALPEDG-KITTIEIDPERAEIARENFRKAGLDDRIEVIE--GDALEVLPELAND 116 (205)
T ss_dssp HHHHT-SEEEEESTT-TSHHHHHHHHTSTTTS-EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE--S-HHHHHHHHHHT
T ss_pred HHhcCCceEEEeccc-cccHHHHHHHhhcccc-eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE--eccHhhHHHHHhc
Confidence 344455799999975 378888888876 45 9999999998887774 345422111111 33333333332
Q ss_pred --CCCccEEE-ecCCc--HHHHHHHHHHhccCCceEEEE
Q 025257 138 --DGGVDYSF-ECIGN--VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 138 --~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.+.||.|| |+--. ...++.++++++++ |.++.=
T Consensus 117 ~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~g-gvii~D 154 (205)
T PF01596_consen 117 GEEGQFDFVFIDADKRNYLEYFEKALPLLRPG-GVIIAD 154 (205)
T ss_dssp TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cCCCceeEEEEcccccchhhHHHHHhhhccCC-eEEEEc
Confidence 23799998 65443 22377888999995 666544
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.029 Score=44.78 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=47.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--C
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
++++||+|+ |++|..+++.+...|+ +|+.+.+ +.++.+.+ +..+... . .|-.+ +......+.+... +
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSD-LPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 468999998 8999999999999999 8888754 33333332 3345321 2 23332 1222222222211 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|.++.+.|.
T Consensus 80 ~id~li~~ag~ 90 (256)
T PRK12743 80 RIDVLVNNAGA 90 (256)
T ss_pred CCCEEEECCCC
Confidence 68999998873
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.022 Score=48.73 Aligned_cols=74 Identities=26% Similarity=0.326 Sum_probs=48.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC--CcEE-eCCCCCCchHHHHHHhhcCCCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG--VTEF-VNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g--~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
++++++|+|+ |++|.+.++.+...|+ +|+++++++++.+.. .+.+ ...+ .|..+ . +.+.+.. +++|++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd--~---~~v~~~l-~~IDiL 249 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEINGEDLPVKTLHWQVGQ--E---AALAELL-EKVDIL 249 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC--H---HHHHHHh-CCCCEE
Confidence 4689999998 9999999998888999 999999877655432 1111 1111 23332 2 2233322 269999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+++.|.
T Consensus 250 InnAGi 255 (406)
T PRK07424 250 IINHGI 255 (406)
T ss_pred EECCCc
Confidence 988764
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.034 Score=43.86 Aligned_cols=79 Identities=24% Similarity=0.321 Sum_probs=48.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHH----HHhcCCcE-Ee--CCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDR----AKNFGVTE-FV--NPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~----~~~~g~~~-vi--~~~~~~~~~~~~i~~~~~-- 138 (255)
++.++||+|+ |.+|...+..+...|+ +|+++.++..+ .+. ++..+... ++ |-.+ +..+.+.+.+...
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 81 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSD-AESVERAVDEAKAEF 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 3568999997 9999999999999999 88777765542 222 22223221 22 3333 1223333333322
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|.++.+.|.
T Consensus 82 ~~id~vi~~ag~ 93 (248)
T PRK05557 82 GGVDILVNNAGI 93 (248)
T ss_pred CCCCEEEECCCc
Confidence 268999998874
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.022 Score=45.91 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=48.7
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+++|+|+ |++|...++.+...|+ +|++++++.++.+.+ +..+... + .|..+ +..+.+.+..... +++|
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD-YSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 6899998 9999999988888999 999999887765543 2233221 1 23222 1222222222211 2699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++.+.|.
T Consensus 80 ~lI~~ag~ 87 (270)
T PRK05650 80 VIVNNAGV 87 (270)
T ss_pred EEEECCCC
Confidence 99998884
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.043 Score=44.62 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=50.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+|.|+|.|.+|...+..++..|. +|++.++++++.+.+.+.|.-.... .+. +.+ ..+|+|+.|+....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~~-----~~~-~~~-----~~aDlVilavp~~~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEAS-----TDL-SLL-----KDCDLVILALPIGL 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCccccc-----CCH-hHh-----cCCCEEEEcCCHHH
Confidence 58899999999999988888898 9999999998888888777421111 111 112 15899999888655
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.063 Score=43.00 Aligned_cols=93 Identities=24% Similarity=0.276 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHHhhcCCCc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
.++.+||-.|+|. |..+..+++. |. +|++++.+++..+.+++ .|.. .++. .+.. .+.....+.|
T Consensus 43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~-----~d~~-~l~~~~~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH-----CAAQ-DIAQHLETPV 113 (255)
T ss_pred CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEE-----cCHH-HHhhhcCCCC
Confidence 4567899989874 7777777774 87 99999999988887754 3321 1221 1121 1222223379
Q ss_pred cEEEecC-----Cc-HHHHHHHHHHhccCCceEEEE
Q 025257 142 DYSFECI-----GN-VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 142 d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~ 171 (255)
|+|+... .. ...+..+.+.|+++ |+++.+
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 148 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPG-GALSLM 148 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEE
Confidence 9998432 22 33478899999997 998765
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.019 Score=45.24 Aligned_cols=35 Identities=40% Similarity=0.473 Sum_probs=30.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
.+.+|+|.|+|++|..+++.+...|.++++.++.+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 34789999999999999999999999888888743
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.023 Score=45.70 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=47.8
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcEE--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g--~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ + ++|.+.++.+...|+ +|+..+++++..+.+++ .+.... .|-.+ ++.+.+.+.+...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAE-DASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCC-HHHHHHHHHHHHhhc
Confidence 4688999997 3 799999998888999 99888876321222322 221112 23333 1233333333222
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+.+|+++++.|
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 36999999887
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.018 Score=50.82 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=52.3
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcC-CcE-EeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFG-VTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g-~~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
+.+|+|.|+|.+|.++++.+...|+.+|+++.++.++.+.+. +++ ... +... .+..+.+. .+|+||.|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~----~dl~~al~-----~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPL----DEMLACAA-----EADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecH----hhHHHHHh-----cCCEEEEc
Confidence 689999999999999999999999868999999988877764 343 221 1111 12222222 58999999
Q ss_pred CCcHH
Q 025257 148 IGNVS 152 (255)
Q Consensus 148 ~g~~~ 152 (255)
++.+.
T Consensus 337 T~s~~ 341 (519)
T PLN00203 337 TSSET 341 (519)
T ss_pred cCCCC
Confidence 87544
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.052 Score=44.39 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=48.6
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.... .+..+.+. ..|+|+.|+....
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~vp~~~ 67 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGAVTA-------ETARQVTE-----QADVIFTMVPDSP 67 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCccc-------CCHHHHHh-----cCCEEEEecCCHH
Confidence 37788999999998888888898 99999999999888877775321 12222222 4677777776543
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.033 Score=47.58 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=52.3
Q ss_pred cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH-------HHHhc-CCcEE-eCCCCCCchHHHHHHh
Q 025257 66 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD-------RAKNF-GVTEF-VNPKDHDKPIQQVLVD 135 (255)
Q Consensus 66 ~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~-------~~~~~-g~~~v-i~~~~~~~~~~~~i~~ 135 (255)
.+...+.+|||+|+ |.+|..+++.+...|. +|++++++..+.+ ..... ++..+ .|..+ ++.+.+.++.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~ 132 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD-ADSLRKVLFS 132 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC-HHHHHHHHHH
Confidence 34456779999998 9999999999988999 9999998765421 11111 33332 24333 1223333332
Q ss_pred hcCCCccEEEecCCc
Q 025257 136 LTDGGVDYSFECIGN 150 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~ 150 (255)
. ++++|+|++|.+.
T Consensus 133 ~-~~~~D~Vi~~aa~ 146 (390)
T PLN02657 133 E-GDPVDVVVSCLAS 146 (390)
T ss_pred h-CCCCcEEEECCcc
Confidence 2 1169999998864
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.017 Score=46.33 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=48.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v~ 145 (255)
.++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+. .....+ .|-.+ +..+.+.+.+... +.+|+++
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~---~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id~li 82 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQH---ENYQFVPTDVSS-AEEVNHTVAEIIEKFGRIDGLV 82 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcccccc---CceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4678999997 9999999999999999 99999887654321 112111 23333 1233333333221 3689999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 83 ~~Ag~ 87 (266)
T PRK06171 83 NNAGI 87 (266)
T ss_pred ECCcc
Confidence 98873
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.025 Score=46.58 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=31.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
.+++++|+|+ +++|.+.++.+...|+ +|++++++.
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~ 42 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRST 42 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeccc
Confidence 4689999997 8999999999999999 999998863
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.096 Score=41.13 Aligned_cols=101 Identities=13% Similarity=0.209 Sum_probs=61.3
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hc-CCcEEeCCCCCCchHHHHHHhhcC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NF-GVTEFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~-g~~~vi~~~~~~~~~~~~i~~~~~ 138 (255)
+...++++++||=.|+|+ |..+..+++..+..+|++++.+++..+.+. +. +.. .+.-+. .+. .......
T Consensus 66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~-~i~~D~--~~~-~~~~~l~- 139 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNII-PILADA--RKP-ERYAHVV- 139 (226)
T ss_pred hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcE-EEECCC--CCc-chhhhcc-
Confidence 457889999999999864 556666777665338999999987666442 22 122 221111 110 0001111
Q ss_pred CCccEEEecCCcHH----HHHHHHHHhccCCceEEEE
Q 025257 139 GGVDYSFECIGNVS----VMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 139 ~~~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~ 171 (255)
+.+|+++.-...+. .++.+.+.|+++ |+++..
T Consensus 140 ~~~D~i~~d~~~p~~~~~~L~~~~r~LKpG-G~lvI~ 175 (226)
T PRK04266 140 EKVDVIYQDVAQPNQAEIAIDNAEFFLKDG-GYLLLA 175 (226)
T ss_pred ccCCEEEECCCChhHHHHHHHHHHHhcCCC-cEEEEE
Confidence 25999995444321 257888899997 998874
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.028 Score=45.58 Aligned_cols=103 Identities=13% Similarity=0.267 Sum_probs=65.2
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHH-HhcCCcEE--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK---KFDRA-KNFGVTEF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~---~~~~~-~~~g~~~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ +++|.++++.+...|+ +|+.++++++ +.+.+ ++++.... .|-.+ .+...+.+.+...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSK-PEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCC-HHHHHHHHHHHHHHc
Confidence 4689999986 4899999999999999 9999888753 22333 33443222 34333 1233333333322
Q ss_pred CCccEEEecCCcH--------------H---------------HHHHHHHHhccCCceEEEEccCC
Q 025257 139 GGVDYSFECIGNV--------------S---------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 139 ~~~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+.+|+++++.|.. . ..+..+..+..+ |+++.++...
T Consensus 82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~~ 146 (274)
T PRK08415 82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYLG 146 (274)
T ss_pred CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecCC
Confidence 3799999988831 0 134556667775 8998887643
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.025 Score=44.86 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=48.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
++.++||+|+ |.+|...++.+...|+ +|++. .+++++.+.+ +..+... . .|-.+ +.+....+.+...
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGD-VEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4578999997 9999999999999999 87764 5665554333 3334321 1 23332 1233333333221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++.+.|.
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 368999998873
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.037 Score=43.23 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=61.5
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEEe---------CCCCCCch-HHHHHH
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFV---------NPKDHDKP-IQQVLV 134 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi---------~~~~~~~~-~~~~i~ 134 (255)
..+.++.+||+.|+|. |.-++.||. .|+ +|++++.++...+.+ ++.+..... .... -. +...+.
T Consensus 33 ~~~~~~~rvL~~gCG~-G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~--v~~~~~D~~ 107 (218)
T PRK13255 33 LALPAGSRVLVPLCGK-SLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGE--ITIYCGDFF 107 (218)
T ss_pred hCCCCCCeEEEeCCCC-hHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCc--eEEEECccc
Confidence 3456778999999874 788888875 799 999999999888765 333321100 0000 00 000111
Q ss_pred hhc--C-CCccEEEecCC--------cHHHHHHHHHHhccCCceEEEE
Q 025257 135 DLT--D-GGVDYSFECIG--------NVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 135 ~~~--~-~~~d~v~d~~g--------~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
++. . +.||.|+|..- .+..+..+.++|+++ |++..+
T Consensus 108 ~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l~ 154 (218)
T PRK13255 108 ALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG-CRGLLV 154 (218)
T ss_pred CCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEEE
Confidence 110 1 26899998553 123478888999997 875554
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.022 Score=45.37 Aligned_cols=100 Identities=19% Similarity=0.139 Sum_probs=60.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc--CCcEE-eCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF--GVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~--g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
.+.+|||+|+ |.+|..+++.+...|. +|+++.+++++....... ++..+ .|..+ . .+.+.+....++|+||
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d--~--~~~l~~~~~~~~d~vi 90 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVTE--G--SDKLVEAIGDDSDAVI 90 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCCC--C--HHHHHHHhhcCCCEEE
Confidence 3579999997 9999999988888899 999999887765443221 23322 23332 1 1222222212689999
Q ss_pred ecCCcHH-------------HHHHHHHHhccC-CceEEEEccC
Q 025257 146 ECIGNVS-------------VMRAALECCHKG-WGTSVIVGVA 174 (255)
Q Consensus 146 d~~g~~~-------------~~~~~~~~l~~~-~G~~v~~g~~ 174 (255)
.+.|... ....+++.+... .++++.++..
T Consensus 91 ~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~ 133 (251)
T PLN00141 91 CATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI 133 (251)
T ss_pred ECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence 8876421 123445544432 2578887654
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.02 Score=44.02 Aligned_cols=35 Identities=37% Similarity=0.541 Sum_probs=31.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
+..+|+|.|+|++|...++.+...|..+++.++.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34789999999999999999999999779999876
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.029 Score=44.37 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=48.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---cC-Cc-EE--eCCCCCCchHHHHHHhhcCCCcc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N---FG-VT-EF--VNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~---~g-~~-~v--i~~~~~~~~~~~~i~~~~~~~~d 142 (255)
++++|+|+ |++|...++.+...|+ +|+++++++++.+... + .+ .. .+ .|-.+ +.+..+.+.+.. ..+|
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~-~~~d 78 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILD-TASHAAFLDSLP-ALPD 78 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC-hHHHHHHHHHHh-hcCC
Confidence 47999997 9999999999989999 9999999887655432 1 11 11 11 23222 122333333321 2579
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++.+.|.
T Consensus 79 ~vv~~ag~ 86 (243)
T PRK07102 79 IVLIAVGT 86 (243)
T ss_pred EEEECCcC
Confidence 99987763
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.028 Score=45.47 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=50.3
Q ss_pred CCCCCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHH-HhcCCcEE--eCCCCCCchHHHHHHhhc
Q 025257 67 KVEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK---KFDRA-KNFGVTEF--VNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 67 ~~~~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~---~~~~~-~~~g~~~v--i~~~~~~~~~~~~i~~~~ 137 (255)
++..++++||+|+ +++|.+.++.+...|+ +|+.+.++++ +.+.+ ++++.... .|-.+ ++...+.+.+..
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~ 83 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTD-EASIDAVFETLE 83 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCC-HHHHHHHHHHHH
Confidence 3445789999986 5899999999999999 9988876532 23333 33453222 23322 123333333322
Q ss_pred C--CCccEEEecCCc
Q 025257 138 D--GGVDYSFECIGN 150 (255)
Q Consensus 138 ~--~~~d~v~d~~g~ 150 (255)
. +.+|+++++.|.
T Consensus 84 ~~~g~iD~lv~nAG~ 98 (272)
T PRK08159 84 KKWGKLDFVVHAIGF 98 (272)
T ss_pred HhcCCCcEEEECCcc
Confidence 2 369999998873
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.074 Score=43.57 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=49.6
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.... .++.+.+. ..|+|+.|+....
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~~~~-------~~~~e~~~-----~~d~vi~~vp~~~ 70 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGAETA-------STAKAVAE-----QCDVIITMLPNSP 70 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec-------CCHHHHHh-----cCCEEEEeCCCHH
Confidence 68899999999988888888898 99999999988888777665311 12222222 4677777776544
Q ss_pred HHH
Q 025257 153 VMR 155 (255)
Q Consensus 153 ~~~ 155 (255)
..+
T Consensus 71 ~~~ 73 (296)
T PRK11559 71 HVK 73 (296)
T ss_pred HHH
Confidence 333
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.034 Score=45.83 Aligned_cols=77 Identities=22% Similarity=0.254 Sum_probs=47.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHH----HHhcCCcEE---eCCCCCCchH---HHHHHhhc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDR----AKNFGVTEF---VNPKDHDKPI---QQVLVDLT 137 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~~~----~~~~g~~~v---i~~~~~~~~~---~~~i~~~~ 137 (255)
++.+++|+|+ +++|...++.+...|+ +|++.+++. ++.+. ++..|.... .|-.+ .+.. .+.+.+
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d-~~~~~~~~~~~~~-- 86 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQ-RATADELVATAVG-- 86 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHH--
Confidence 4678999997 8999999998888999 999887643 22222 233343221 12222 1122 222222
Q ss_pred CCCccEEEecCCc
Q 025257 138 DGGVDYSFECIGN 150 (255)
Q Consensus 138 ~~~~d~v~d~~g~ 150 (255)
-+.+|+++++.|.
T Consensus 87 ~g~iD~li~nAG~ 99 (306)
T PRK07792 87 LGGLDIVVNNAGI 99 (306)
T ss_pred hCCCCEEEECCCC
Confidence 2479999998874
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.18 Score=40.21 Aligned_cols=99 Identities=16% Similarity=0.259 Sum_probs=62.9
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-cEEeCCCCCCchHHHHHHhhcCCCcc
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV-TEFVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
......++.+||-.|+|. |..+..+++ .|. +|++++.+++..+.+++... ..++.. +.. .+ ...++.||
T Consensus 36 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~-----d~~-~~-~~~~~~fD 105 (251)
T PRK10258 36 AMLPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAG-----DIE-SL-PLATATFD 105 (251)
T ss_pred HhcCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEc-----Ccc-cC-cCCCCcEE
Confidence 334445678999999875 655555544 687 99999999998888876542 122211 110 01 11122699
Q ss_pred EEEecCC------cHHHHHHHHHHhccCCceEEEEcc
Q 025257 143 YSFECIG------NVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 143 ~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+|+.... ....+..+.+.++++ |.++....
T Consensus 106 ~V~s~~~l~~~~d~~~~l~~~~~~Lk~g-G~l~~~~~ 141 (251)
T PRK10258 106 LAWSNLAVQWCGNLSTALRELYRVVRPG-GVVAFTTL 141 (251)
T ss_pred EEEECchhhhcCCHHHHHHHHHHHcCCC-eEEEEEeC
Confidence 9986432 233478888999997 99887644
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.1 Score=39.57 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=63.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~~ 135 (255)
+.....+.++.+||-.|+|. |..++.+++.....+|++++.+++..+.+++ .+... ++.. +....+
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~-----d~~~~~-- 94 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG-----EAPIEL-- 94 (187)
T ss_pred HHHhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec-----Cchhhc--
Confidence 34556778899999999864 6677777776532399999999887777643 33322 2221 111111
Q ss_pred hcCCCccEEEecCCc---HHHHHHHHHHhccCCceEEEE
Q 025257 136 LTDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.+.+|+|+..... ...++.+.+.|+++ |+++..
T Consensus 95 --~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~ 130 (187)
T PRK08287 95 --PGKADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLT 130 (187)
T ss_pred --CcCCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEE
Confidence 1369999853321 23467888999997 998764
|
|
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.19 Score=40.97 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=46.7
Q ss_pred HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc---CCcchHHHHHhcCCcEEeCCC
Q 025257 63 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID---IDPKKFDRAKNFGVTEFVNPK 123 (255)
Q Consensus 63 ~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~---~~~~~~~~~~~~g~~~vi~~~ 123 (255)
.....++||.+|+---+|.+|.+++.+++.+|+ +++.+. .|+++++.++.+|+..+..+.
T Consensus 54 e~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy-~~iivmP~~~S~er~~~l~a~GAevi~t~~ 116 (300)
T COG0031 54 EKRGLLKPGGTIVEATSGNTGIALAMVAAAKGY-RLIIVMPETMSQERRKLLRALGAEVILTPG 116 (300)
T ss_pred HHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence 356779999965543459999999999999999 776664 467889999999998665444
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.02 Score=45.26 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=47.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-Ccch-HHHH---HhcCCcEE---eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKK-FDRA---KNFGVTEF---VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~-~~~~---~~~g~~~v---i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++.++|+|+ |++|...++.+...|+ +|++..+ ++.+ .+.+ ++.+.... .|..+ .+++.+.+.+...
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGD-WDSTKAAFDKVKAEV 79 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence 3578999997 9999999999999999 8877543 2222 2222 23343322 23332 1223222322211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 80 ~~id~li~~ag~ 91 (246)
T PRK12938 80 GEIDVLVNNAGI 91 (246)
T ss_pred CCCCEEEECCCC
Confidence 379999999885
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.068 Score=39.39 Aligned_cols=84 Identities=18% Similarity=0.149 Sum_probs=56.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC------cEEeCCCC-CCchHHHHHHhhcCCCccEEE
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV------TEFVNPKD-HDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~------~~vi~~~~-~~~~~~~~i~~~~~~~~d~v~ 145 (255)
+|.|+|+|..|.+++..+...|. +|....++++..+.+++-+. ...+...- ...++.+.++ +.|+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~-----~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE-----DADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT-----T-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC-----cccEEE
Confidence 58899999999999999999998 99999999888887754321 00010000 0134544443 589999
Q ss_pred ecCCcHHHHHHHHHHhcc
Q 025257 146 ECIGNVSVMRAALECCHK 163 (255)
Q Consensus 146 d~~g~~~~~~~~~~~l~~ 163 (255)
-++.... .+..++.+++
T Consensus 75 iavPs~~-~~~~~~~l~~ 91 (157)
T PF01210_consen 75 IAVPSQA-HREVLEQLAP 91 (157)
T ss_dssp E-S-GGG-HHHHHHHHTT
T ss_pred ecccHHH-HHHHHHHHhh
Confidence 8888766 6666666665
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.11 Score=40.09 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=63.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhc-CCCccEE
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT-DGGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~-~~~~d~v 144 (255)
++.+||-.|+|. |..+..+++.....+|++++.+++..+.+++ .+.+.+ .... .+..+.+.... .+.+|.|
T Consensus 40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v-~~~~--~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNL-RLLC--GDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCE-EEEe--cCHHHHHHHHcCccccceE
Confidence 668899999875 7777788876643389999999988887743 233222 1111 22323333222 2378998
Q ss_pred EecCC--------------cHHHHHHHHHHhccCCceEEEEc
Q 025257 145 FECIG--------------NVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 145 ~d~~g--------------~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+-... .+..++.+.+.|+++ |.++...
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~ 156 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFAT 156 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEc
Confidence 75322 234478889999997 9988763
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.041 Score=45.57 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=32.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 109 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~ 109 (255)
.+.+|||+|+ |.+|..+++.+...|. +|+++.++.++.+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~ 43 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTDRK 43 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcchH
Confidence 4679999997 9999999998888999 9998888766543
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.036 Score=44.78 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhc--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~--~~ 139 (255)
+..+++|+|+ |.+|..+++.+...|+ +|++++++.++.+.+ +..+... + .|..+ ...+.+.+.+.. -+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 86 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTD-PDSVKSFVAQAEEALG 86 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence 3468999997 9999999998888999 999998876654433 2234321 1 23332 122333333221 13
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++.+.|.
T Consensus 87 ~id~vi~~Ag~ 97 (274)
T PRK07775 87 EIEVLVSGAGD 97 (274)
T ss_pred CCCEEEECCCc
Confidence 68999998874
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.026 Score=44.35 Aligned_cols=103 Identities=22% Similarity=0.315 Sum_probs=65.0
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLV 134 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~ 134 (255)
+.....++++++||-.|+|. |..+..+++..+. .+|++++.+++..+.+++ .+.+. ++.. +.. .+
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~-~~- 108 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG-----NAM-EL- 108 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe-----chh-cC-
Confidence 44556788999999999874 6677788877642 289999999887776643 22221 1211 111 01
Q ss_pred hhcCCCccEEEecCC------cHHHHHHHHHHhccCCceEEEEcc
Q 025257 135 DLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
....+.+|+|+-+.. ....++.+.+.|+++ |+++....
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 152 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG-GKVVCLET 152 (231)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcC-eEEEEEEC
Confidence 111237999974321 123367788999997 99987644
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.04 Score=43.57 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=48.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHH----HhcC---CcE-EeCCCCCCchHHHHHHhhc--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRA----KNFG---VTE-FVNPKDHDKPIQQVLVDLT-- 137 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~~~----~~~g---~~~-vi~~~~~~~~~~~~i~~~~-- 137 (255)
.+.++||+|+ |.+|..+++.+...|+ +|++++++.+ +.+.+ .+.+ ... ..|..+ .+.+...+.+..
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLD-PDALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 4578999998 9999999988888999 9999997643 33322 2221 111 224333 122222233221
Q ss_pred CCCccEEEecCC
Q 025257 138 DGGVDYSFECIG 149 (255)
Q Consensus 138 ~~~~d~v~d~~g 149 (255)
-+++|+++.+.|
T Consensus 83 ~~~~d~vi~~ag 94 (249)
T PRK09135 83 FGRLDALVNNAS 94 (249)
T ss_pred cCCCCEEEECCC
Confidence 126899999988
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.025 Score=45.90 Aligned_cols=84 Identities=27% Similarity=0.308 Sum_probs=56.3
Q ss_pred cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcEEe---CCCCCC---chHHHHHHhhc
Q 025257 66 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFV---NPKDHD---KPIQQVLVDLT 137 (255)
Q Consensus 66 ~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi---~~~~~~---~~~~~~i~~~~ 137 (255)
.+.+|...++|+|+ .++|++.+.-++..|+ +|..+.++.++...++ .++....+ .+...+ .+-++.+.+-+
T Consensus 28 ~~~k~~~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l 106 (331)
T KOG1210|consen 28 VKPKPRRHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEEL 106 (331)
T ss_pred cccCccceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhh
Confidence 34566689999986 8999999999999999 9999999999988874 45422111 111100 11122222222
Q ss_pred ---CCCccEEEecCCc
Q 025257 138 ---DGGVDYSFECIGN 150 (255)
Q Consensus 138 ---~~~~d~v~d~~g~ 150 (255)
.+.+|.+|.|.|.
T Consensus 107 ~~~~~~~d~l~~cAG~ 122 (331)
T KOG1210|consen 107 RDLEGPIDNLFCCAGV 122 (331)
T ss_pred hhccCCcceEEEecCc
Confidence 2379999999995
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.038 Score=48.14 Aligned_cols=70 Identities=29% Similarity=0.347 Sum_probs=48.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc-chH----HHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEE
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-KKF----DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~----~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
.+++|+|+|+|.+|+.+++.+...|+ +|++++.+. +.. +.+.+.|...+.... .+ .. .+++|+|
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~---~~---~~----~~~~d~v 72 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELGIELVLGEY---PE---EF----LEGVDLV 72 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCEEEeCCc---ch---hH----hhcCCEE
Confidence 46899999998899999999999999 999999864 222 334455655333222 11 11 1268999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+.++|.
T Consensus 73 v~~~g~ 78 (450)
T PRK14106 73 VVSPGV 78 (450)
T ss_pred EECCCC
Confidence 998885
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.066 Score=46.34 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=64.5
Q ss_pred HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-EE--eCCCCCCchHHHHHHh
Q 025257 63 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT-EF--VNPKDHDKPIQQVLVD 135 (255)
Q Consensus 63 ~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--i~~~~~~~~~~~~i~~ 135 (255)
.....++++++||-.|+|+ |..++.+++..+..+|++++.++++.+.++ ..|.+ .+ .+... ..... .
T Consensus 231 ~~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~--~~~~~-~-- 304 (426)
T TIGR00563 231 ATWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG--RGPSQ-W-- 304 (426)
T ss_pred HHHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc--ccccc-c--
Confidence 3456788999999998764 555556666555239999999999877763 45654 22 22111 11100 0
Q ss_pred hcCCCccEEE-e--cCCc-------------------------HHHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDGGVDYSF-E--CIGN-------------------------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
...+.||.|+ | |+|. ...+..+++.+++| |+++..-.
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvystc 369 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYATC 369 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeC
Confidence 0112699998 4 4442 22477888999997 99886543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.023 Score=46.70 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=58.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCC--CchHHHHHHhhcCCCccEEEecCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH--DKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~--~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+|+|+|+|.+|...+..+...|. +|+.+++++++.+.+++.|... +..+. .........+. ..+|+|+-|+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~--~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRL--EDGEITVPVLAADDPAEL--GPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcc--cCCceeecccCCCChhHc--CCCCEEEEeccc
Confidence 58999999999999988888898 9999999888877777656421 10000 00000011111 269999998886
Q ss_pred HHHHHHHHHHhc----cCCceEEEEc
Q 025257 151 VSVMRAALECCH----KGWGTSVIVG 172 (255)
Q Consensus 151 ~~~~~~~~~~l~----~~~G~~v~~g 172 (255)
.. .+.++..++ ++ ..++.+.
T Consensus 77 ~~-~~~~~~~l~~~l~~~-~~iv~~~ 100 (304)
T PRK06522 77 YQ-LPAALPSLAPLLGPD-TPVLFLQ 100 (304)
T ss_pred cc-HHHHHHHHhhhcCCC-CEEEEec
Confidence 55 455555444 43 4555553
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.026 Score=46.49 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=58.8
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCcEEeCCCCCCchHHHHHHhhc---CCCccEEEec
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTEFVNPKDHDKPIQQVLVDLT---DGGVDYSFEC 147 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~i~~~~---~~~~d~v~d~ 147 (255)
.+|+|.|+|++|......+...|. +|..+++++++.+.+++. |.. +.+..+ ...+ .+...+ .+.+|+||-|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~-~~~~--~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLT-LVEQGQ-ASLY--AIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeE-EeeCCc-ceee--ccCCCCcccccccCEEEEE
Confidence 369999999999988877788898 999999987777777643 432 211111 0000 000000 1268999998
Q ss_pred CCcHHHHHHHH----HHhccCCceEEEEcc
Q 025257 148 IGNVSVMRAAL----ECCHKGWGTSVIVGV 173 (255)
Q Consensus 148 ~g~~~~~~~~~----~~l~~~~G~~v~~g~ 173 (255)
+-... ...++ ..+.++ ..++.+-+
T Consensus 78 vK~~~-~~~al~~l~~~l~~~-t~vv~lQN 105 (305)
T PRK05708 78 CKAYD-AEPAVASLAHRLAPG-AELLLLQN 105 (305)
T ss_pred CCHHh-HHHHHHHHHhhCCCC-CEEEEEeC
Confidence 87655 44444 445565 66666643
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.15 Score=41.96 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=63.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCc
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
+.+...-.+..+|.|.|.|.+|...+..++..|. +|+++++++. .+.+++.|+.. . .+..+.+. ...
T Consensus 27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv~~-~------~~~~e~~~----~~a 93 (304)
T PLN02256 27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGVSF-F------RDPDDFCE----EHP 93 (304)
T ss_pred HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCCee-e------CCHHHHhh----CCC
Confidence 3344444466789999999999999998888898 9999998763 45566677632 1 22222221 147
Q ss_pred cEEEecCCcHHHHHHHHHH-----hccCCceEEEEcc
Q 025257 142 DYSFECIGNVSVMRAALEC-----CHKGWGTSVIVGV 173 (255)
Q Consensus 142 d~v~d~~g~~~~~~~~~~~-----l~~~~G~~v~~g~ 173 (255)
|+|+-|+.... +...++- ++++ ..++.++.
T Consensus 94 DvVilavp~~~-~~~vl~~l~~~~l~~~-~iviDv~S 128 (304)
T PLN02256 94 DVVLLCTSILS-TEAVLRSLPLQRLKRS-TLFVDVLS 128 (304)
T ss_pred CEEEEecCHHH-HHHHHHhhhhhccCCC-CEEEecCC
Confidence 88988887654 4444443 3454 56666655
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.032 Score=39.50 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=50.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGID-IDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~-~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
.-+|-|+|+|.+|..+...++..|. .|..+. ++.++.+++.. ++...+.+.. +.. ..+|++|-++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~-----------~~~-~~aDlv~iav 76 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLE-----------EIL-RDADLVFIAV 76 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TT-----------GGG-CC-SEEEE-S
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCcccccccccccccccccccc-----------ccc-ccCCEEEEEe
Confidence 3588999999999999999999999 888875 55556666644 3433333322 111 1689999999
Q ss_pred CcHHHHHHHHHHhcc
Q 025257 149 GNVSVMRAALECCHK 163 (255)
Q Consensus 149 g~~~~~~~~~~~l~~ 163 (255)
.... +...+..|..
T Consensus 77 pDda-I~~va~~La~ 90 (127)
T PF10727_consen 77 PDDA-IAEVAEQLAQ 90 (127)
T ss_dssp -CCH-HHHHHHHHHC
T ss_pred chHH-HHHHHHHHHH
Confidence 9877 7777777764
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.045 Score=44.33 Aligned_cols=100 Identities=21% Similarity=0.324 Sum_probs=60.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhc-CCCcc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLT-DGGVD 142 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~-~~~~d 142 (255)
++.++|+|+|++|.++++.+. .|+ +|+.+++++++.+.+ +..|... ..|-.+ ++.+.+.+.+.. .+++|
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS-RESVKALAATAQTLGPVT 78 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHhcCCCC
Confidence 357899999999999998875 798 999999987665443 2223221 124333 123333333321 13799
Q ss_pred EEEecCCcHH------------------HHHHHHHHhccCCceEEEEccC
Q 025257 143 YSFECIGNVS------------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 143 ~v~d~~g~~~------------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++++.|... .++...+.+..+ |+++.++..
T Consensus 79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-g~iv~isS~ 127 (275)
T PRK06940 79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPG-GAGVVIASQ 127 (275)
T ss_pred EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhC-CCEEEEEec
Confidence 9999988421 133444555665 666666543
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.067 Score=44.61 Aligned_cols=99 Identities=19% Similarity=0.146 Sum_probs=60.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC--cEEeCCCCC---CchHHHHHHhhcCCCccEE
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV--TEFVNPKDH---DKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~--~~vi~~~~~---~~~~~~~i~~~~~~~~d~v 144 (255)
..++|||+|+|. |..+.++++..+..+|++++.+++-.+.+++.-. ...++.... ..+-.+.+++ +.+.+|+|
T Consensus 103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CCCCccEE
Confidence 346899998864 6667778887776689999999998888876421 111110000 0222233332 23379999
Q ss_pred E-ecCC----c-------HHHHH-HHHHHhccCCceEEEE
Q 025257 145 F-ECIG----N-------VSVMR-AALECCHKGWGTSVIV 171 (255)
Q Consensus 145 ~-d~~g----~-------~~~~~-~~~~~l~~~~G~~v~~ 171 (255)
| |... + ..-++ .+.+.|+++ |.++.-
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q 219 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG-GIFVTQ 219 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCC-cEEEEe
Confidence 8 6432 1 11245 677899997 987654
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.044 Score=46.16 Aligned_cols=36 Identities=31% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
.+.+|+|.|+|++|..+++.+...|..++..++.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 347999999999999999999999998998888654
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.053 Score=48.69 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=57.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
++++|.|.|.+|...++.++..|. ++++++.++++.+.+++.|...+.-... -.+.+++..-+.+|.++-++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~GD~~----~~~~L~~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLGNAA----NEEIMQLAHLDCARWLLLTIPNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEcCCC----CHHHHHhcCccccCEEEEEcCCh
Confidence 688999999999999999999999 9999999999999999988766553322 12233333212789888776654
Q ss_pred H
Q 025257 152 S 152 (255)
Q Consensus 152 ~ 152 (255)
.
T Consensus 493 ~ 493 (558)
T PRK10669 493 Y 493 (558)
T ss_pred H
Confidence 3
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.061 Score=42.75 Aligned_cols=104 Identities=16% Similarity=0.294 Sum_probs=65.7
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
|....+..+-++||-.|.+ +|..++.+++.+ +. +|+.++.+++..+.++ +.|...-|.... .+..+.+.+
T Consensus 71 L~~l~~~~~ak~iLEiGT~-~GySal~la~al~~~g-~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~--G~a~e~L~~ 146 (247)
T PLN02589 71 LNMLLKLINAKNTMEIGVY-TGYSLLATALALPEDG-KILAMDINRENYELGLPVIQKAGVAHKIDFRE--GPALPVLDQ 146 (247)
T ss_pred HHHHHHHhCCCEEEEEeCh-hhHHHHHHHhhCCCCC-EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe--ccHHHHHHH
Confidence 3344555566789999874 477778888876 45 8999999988777664 456332222222 344444444
Q ss_pred hc-----CCCccEEE-ecCCc--HHHHHHHHHHhccCCceEEE
Q 025257 136 LT-----DGGVDYSF-ECIGN--VSVMRAALECCHKGWGTSVI 170 (255)
Q Consensus 136 ~~-----~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~ 170 (255)
+. .+.||.|| |+--. ...++.+++++++| |.++.
T Consensus 147 l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G-Gviv~ 188 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVG-GVIGY 188 (247)
T ss_pred HHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCC-eEEEE
Confidence 32 13799998 54432 22377888999996 76553
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.08 Score=42.86 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=65.0
Q ss_pred ccccchhhhhhHHHhhcCCC-CCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCc
Q 025257 50 LLGCGVPTGLGAVWNTAKVE-PGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 127 (255)
Q Consensus 50 ~~~~~~~ta~~~l~~~~~~~-~~~~vlI~G~g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~ 127 (255)
.+||+....+. +.+..++. .|++|+|.|.| .+|.-++.++...|+ .|.+... .. .
T Consensus 136 ~~PcTp~avi~-lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs-------------------~t--~ 192 (285)
T PRK14191 136 FVPATPMGVMR-LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHI-------------------LT--K 192 (285)
T ss_pred CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeC-------------------Cc--H
Confidence 34544333332 44555654 69999999985 999999999999999 8876632 11 3
Q ss_pred hHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 128 PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 128 ~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++.+.++ .+|+++-++|.+. + -.-++++++ ..++.+|..
T Consensus 193 ~l~~~~~-----~ADIvV~AvG~p~-~-i~~~~vk~G-avVIDvGi~ 231 (285)
T PRK14191 193 DLSFYTQ-----NADIVCVGVGKPD-L-IKASMVKKG-AVVVDIGIN 231 (285)
T ss_pred HHHHHHH-----hCCEEEEecCCCC-c-CCHHHcCCC-cEEEEeecc
Confidence 3443444 4899999999887 3 224577896 899999864
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.19 Score=40.87 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=72.2
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc---C-C-cEEeCCCCCCchHH---HHHHhhcCC
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF---G-V-TEFVNPKDHDKPIQ---QVLVDLTDG 139 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~---g-~-~~vi~~~~~~~~~~---~~i~~~~~~ 139 (255)
-+++-|+|+|+ ++.|..++.-+...|. +|++.+-.++..+.++.. + . +..+|-.+ ++.+. +.+++..+.
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf-~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~-~esi~~a~~~V~~~l~~ 104 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGF-RVFAGCLTEEGAESLRGETKSPRLRTLQLDVTK-PESVKEAAQWVKKHLGE 104 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCC-EEEEEeecCchHHHHhhhhcCCcceeEeeccCC-HHHHHHHHHHHHHhccc
Confidence 46678999998 9999999999999999 999999888887777432 1 1 12234332 13333 344555555
Q ss_pred -CccEEEecCCcH--------------------------HHHHHHHHHhccCCceEEEEccCCCC
Q 025257 140 -GVDYSFECIGNV--------------------------SVMRAALECCHKGWGTSVIVGVAASG 177 (255)
Q Consensus 140 -~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~~~~ 177 (255)
+.--+++++|-. ......+.++++..||+|.+++..+.
T Consensus 105 ~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR 169 (322)
T KOG1610|consen 105 DGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGR 169 (322)
T ss_pred ccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccC
Confidence 777778888721 12445566777645999999886543
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.051 Score=46.02 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=31.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
.+.+|+|.|+|++|..+++.+...|..+++.++.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45789999999999999999999999889888865
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.053 Score=49.23 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=58.8
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeC-CCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN-PKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.++|+|.|.|.+|+..++.++..|. ++++++.++++.+.+++.|...++- ..+ ++ .+++..-+.+|.++-+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~--~~---~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFYGDATR--MD---LLESAGAAKAEVLINAID 473 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEEEeCCC--HH---HHHhcCCCcCCEEEEEeC
Confidence 3689999999999999999999999 9999999999999999888765442 222 22 233332127999998888
Q ss_pred cHH
Q 025257 150 NVS 152 (255)
Q Consensus 150 ~~~ 152 (255)
...
T Consensus 474 d~~ 476 (621)
T PRK03562 474 DPQ 476 (621)
T ss_pred CHH
Confidence 765
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.065 Score=43.55 Aligned_cols=96 Identities=8% Similarity=0.013 Sum_probs=59.2
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE-EeCCCCCCchHHHHHHhhcC-CC-ccEEEecC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTD-GG-VDYSFECI 148 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~i~~~~~-~~-~d~v~d~~ 148 (255)
+|||+|+ |.+|..+++.+...|. +|.+.+|++++.. ..+... ..|..+ +..+.+.++.... .+ +|.+|.+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~-~V~~~~R~~~~~~---~~~~~~~~~d~~d-~~~l~~a~~~~~~~~g~~d~v~~~~ 75 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV-PFLVASRSSSSSA---GPNEKHVKFDWLD-EDTWDNPFSSDDGMEPEISAVYLVA 75 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC-cEEEEeCCCcccc---CCCCccccccCCC-HHHHHHHHhcccCcCCceeEEEEeC
Confidence 4899998 9999999999998999 9999999877542 223332 234443 2334444432222 25 89998776
Q ss_pred CcH----HHHHHHHHHhccCC-ceEEEEcc
Q 025257 149 GNV----SVMRAALECCHKGW-GTSVIVGV 173 (255)
Q Consensus 149 g~~----~~~~~~~~~l~~~~-G~~v~~g~ 173 (255)
+.. ......++.++..+ .++|.++.
T Consensus 76 ~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 76 PPIPDLAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred CCCCChhHHHHHHHHHHHHcCCCEEEEeec
Confidence 531 11344555555431 36777754
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.037 Score=43.98 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=49.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--CCc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
++++|+|+ |++|...++.+...|+ +|+.+.+++++.+.+ +..+... . .|-.+ ++.+.+.+.+... +.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD-KDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCCC
Confidence 36899997 9999999999999999 999999876654433 2233221 1 23332 1223333333221 268
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++++.|.
T Consensus 79 d~vi~~ag~ 87 (254)
T TIGR02415 79 DVMVNNAGV 87 (254)
T ss_pred CEEEECCCc
Confidence 999998874
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.039 Score=40.34 Aligned_cols=97 Identities=23% Similarity=0.294 Sum_probs=63.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCC----CCchHHHHHHhhcCC-CccEE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD----HDKPIQQVLVDLTDG-GVDYS 144 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~----~~~~~~~~i~~~~~~-~~d~v 144 (255)
..+|+|+|+ |.+|.+.++..+..++ -|..++-++... .....+++..+ .++...+++.+...| .+|.|
T Consensus 3 agrVivYGGkGALGSacv~~Fkanny-wV~siDl~eNe~-----Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav 76 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNY-WVLSIDLSENEQ-----ADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAV 76 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCe-EEEEEeeccccc-----ccceEEecCCcchhHHHHHHHHHHHHhhcccccceE
Confidence 358999998 9999999999999999 888888654322 12222333321 113344555555667 99999
Q ss_pred EecCCc--------HH------------------HHHHHHHHhccCCceEEEEccC
Q 025257 145 FECIGN--------VS------------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 145 ~d~~g~--------~~------------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
|...|+ ++ +...+-..|+++ |-+.+.|..
T Consensus 77 ~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~G-GLL~LtGAk 131 (236)
T KOG4022|consen 77 FCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPG-GLLQLTGAK 131 (236)
T ss_pred EEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCC-ceeeecccc
Confidence 986664 11 123344578896 888777653
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.093 Score=43.53 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=61.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEE-ecC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF-ECI 148 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~-d~~ 148 (255)
.|+++.|.|.|.+|.+.++.++..|. +|+..++++. .+..++.++.++ + +.+.++ ..|++. .|.
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~-~~~~~~~~~~y~-------~-l~ell~-----~sDii~l~~P 209 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN-PEAEKELGARYV-------D-LDELLA-----ESDIISLHCP 209 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC-hHHHhhcCceec-------c-HHHHHH-----hCCEEEEeCC
Confidence 57899999999999999999999999 9999998876 444445555432 2 333333 366665 555
Q ss_pred CcHHH----HHHHHHHhccCCceEEEEcc
Q 025257 149 GNVSV----MRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~~~----~~~~~~~l~~~~G~~v~~g~ 173 (255)
..+.+ -...+..|+++ +.+|-++-
T Consensus 210 lt~~T~hLin~~~l~~mk~g-a~lVNtaR 237 (324)
T COG1052 210 LTPETRHLINAEELAKMKPG-AILVNTAR 237 (324)
T ss_pred CChHHhhhcCHHHHHhCCCC-eEEEECCC
Confidence 55442 24566778885 77776654
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.079 Score=44.24 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=33.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcch
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 107 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~ 107 (255)
.|++|.|+|.|.+|...++.++..|. +|++.+++++.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 185 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP 185 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence 57899999999999999999999999 99999987544
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.05 Score=40.87 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=29.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
+|+|.|+|++|...++.+...|..+++.++.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999997799988764
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.044 Score=46.44 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=36.2
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~ 113 (255)
...+++|||+|+ |.+|..+++.+...|+ +|+++.++.++.+.+++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~~~~l~~ 95 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQEDKEKLRE 95 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 456789999997 9999999999999999 99888877665544433
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.071 Score=40.96 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=30.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
+.+|+|.|+|++|...++.+...|.++++.++.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3789999999999999999999999888888754
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.046 Score=45.22 Aligned_cols=78 Identities=22% Similarity=0.182 Sum_probs=50.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHH-HhcC---C--cEE-eCCCCCCchHHHHHHhhc--CC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRA-KNFG---V--TEF-VNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~-~~~g---~--~~v-i~~~~~~~~~~~~i~~~~--~~ 139 (255)
+.+++|+|+ +++|.+.++.+...| + +|+.+++++++.+.+ ++++ . ..+ .|-.+ .....+.+.+.. .+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~ 80 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGS-LDSVRQFVQQFRESGR 80 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHHHHHHhCC
Confidence 568999998 899999998888899 8 999999887766544 3332 1 111 34333 122322233221 23
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 81 ~iD~lI~nAG~ 91 (314)
T TIGR01289 81 PLDALVCNAAV 91 (314)
T ss_pred CCCEEEECCCc
Confidence 69999988773
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.044 Score=43.26 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=48.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHHH----hcCCcE-E--eCCCCCCchHHHHHHhhcC--C
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
++++||+|+ |.+|...+..+...|+ +|+++ .+++++.+.+. ..+... + .|..+ +..+.+.+..... +
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSS-EEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 468999997 9999999988888899 89888 88776654432 222211 1 23332 1222222222211 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++.+.|.
T Consensus 83 ~id~vi~~ag~ 93 (247)
T PRK05565 83 KIDILVNNAGI 93 (247)
T ss_pred CCCEEEECCCc
Confidence 69999998874
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.075 Score=43.18 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=57.8
Q ss_pred hhcCC-CCCCEEEEEcCCh-HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCc
Q 025257 64 NTAKV-EPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 64 ~~~~~-~~~~~vlI~G~g~-vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
+...+ -.|++|+|.|.|+ +|...+.++...|+ .|++..+. . .++.+.++ .+
T Consensus 151 ~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~-------------------t--~~L~~~~~-----~a 203 (283)
T PRK14192 151 KAYNIELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSR-------------------T--QNLPELVK-----QA 203 (283)
T ss_pred HHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCC-------------------c--hhHHHHhc-----cC
Confidence 34443 4788999999976 99999999999999 88877641 1 22322232 58
Q ss_pred cEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 142 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
|+++.++|.+.. -..+.++++ ..++.+|..
T Consensus 204 DIvI~AtG~~~~--v~~~~lk~g-avViDvg~n 233 (283)
T PRK14192 204 DIIVGAVGKPEL--IKKDWIKQG-AVVVDAGFH 233 (283)
T ss_pred CEEEEccCCCCc--CCHHHcCCC-CEEEEEEEe
Confidence 999999987662 223568886 888888764
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.034 Score=44.53 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=61.5
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCcc------hHHHHHhcCCc-EE--eCCCCCCchHHHHHHhhc
Q 025257 70 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK------KFDRAKNFGVT-EF--VNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 70 ~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~------~~~~~~~~g~~-~v--i~~~~~~~~~~~~i~~~~ 137 (255)
++++++|+|+ +++|.+.++.+...|+ +|+.+.++.+ ..+.+++.+.. .. .|-.+ ++...+.+.+..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~ 82 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQD-DAQIEETFETIK 82 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCC-HHHHHHHHHHHH
Confidence 4688999986 4899999998888999 8888754332 22223222211 11 23332 123333333322
Q ss_pred C--CCccEEEecCCcH-------H----------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 138 D--GGVDYSFECIGNV-------S----------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 138 ~--~~~d~v~d~~g~~-------~----------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
. +.+|+++++.|.. . ..+..++.++.+ |+++.++...
T Consensus 83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~-g~Iv~isS~~ 150 (258)
T PRK07370 83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG-GSIVTLTYLG 150 (258)
T ss_pred HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC-CeEEEEeccc
Confidence 2 3799999988731 1 124456667775 8998887643
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.1 Score=44.36 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=60.4
Q ss_pred CCEEEEE----cC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----------HhcCCcEEeCCCCCCchHHHHHH
Q 025257 71 GSIVAVF----GL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-----------KNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 71 ~~~vlI~----G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-----------~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
..+|||+ |+ |-+|..+++.+...|. +|+++++++.+.+.+ ...|...+. .++.+ +.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~------~D~~d-~~ 123 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW------GDPAD-VK 123 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCchhhhhHhhhcCceEEE------ecHHH-HH
Confidence 3689999 98 9999999998888998 999999887643221 223444332 22222 22
Q ss_pred hhcCC-CccEEEecCCcHH-HHHHHHHHhccCC-ceEEEEcc
Q 025257 135 DLTDG-GVDYSFECIGNVS-VMRAALECCHKGW-GTSVIVGV 173 (255)
Q Consensus 135 ~~~~~-~~d~v~d~~g~~~-~~~~~~~~l~~~~-G~~v~~g~ 173 (255)
+.... ++|+|+++.+... ....+++.++..+ .+++.++.
T Consensus 124 ~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS 165 (378)
T PLN00016 124 SKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS 165 (378)
T ss_pred hhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 22223 7999999877432 2445566665431 37887764
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.052 Score=42.34 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=58.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
++.+|||.|+|.++.-=++.+...|+ +|++++..-. ....+.+.|.-.++. ++ +.+. ++ .++++||-|+
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~~~~~i~~~~-r~----~~~~--dl--~g~~LViaAT 93 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLKKYGNLKLIK-GN----YDKE--FI--KDKHLIVIAT 93 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHHhCCCEEEEe-CC----CChH--Hh--CCCcEEEECC
Confidence 46799999999999888888888999 9988875331 222222333222221 11 1111 11 2699999999
Q ss_pred CcHHHHHHHHHHhccCCceEEEEcc
Q 025257 149 GNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.+..-+.+....+.. +.++....
T Consensus 94 dD~~vN~~I~~~a~~~-~~lvn~vd 117 (223)
T PRK05562 94 DDEKLNNKIRKHCDRL-YKLYIDCS 117 (223)
T ss_pred CCHHHHHHHHHHHHHc-CCeEEEcC
Confidence 9988445566666664 66665543
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.17 Score=38.61 Aligned_cols=63 Identities=25% Similarity=0.331 Sum_probs=40.5
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+++|+|+ |++|...+..+... . +|+.+++++.. ...|-.+ ++.+.+.+.+. +++|+++.+.|.
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~-~vi~~~r~~~~----------~~~D~~~-~~~~~~~~~~~--~~id~lv~~ag~ 65 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-H-EVITAGRSSGD----------VQVDITD-PASIRALFEKV--GKVDAVVSAAGK 65 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-C-cEEEEecCCCc----------eEecCCC-hHHHHHHHHhc--CCCCEEEECCCC
Confidence 6899997 89999988777666 7 99999876531 1233333 12233333322 368898888873
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.16 Score=39.38 Aligned_cols=97 Identities=23% Similarity=0.308 Sum_probs=58.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEE
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSF 145 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~ 145 (255)
++++++||=+|+|+ |..+..+++..+. .+|++++.++... .-++. ++.-+-......+.+.+.... .+|+|+
T Consensus 49 ~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~~~----~~~v~-~i~~D~~~~~~~~~i~~~~~~~~~D~V~ 122 (209)
T PRK11188 49 FKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPMDP----IVGVD-FLQGDFRDELVLKALLERVGDSKVQVVM 122 (209)
T ss_pred CCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEecccccC----CCCcE-EEecCCCChHHHHHHHHHhCCCCCCEEe
Confidence 58899999999875 6666667776653 2899999876211 11222 222111013333444443334 899999
Q ss_pred ecC-----Cc------------HHHHHHHHHHhccCCceEEEE
Q 025257 146 ECI-----GN------------VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 146 d~~-----g~------------~~~~~~~~~~l~~~~G~~v~~ 171 (255)
... |. ...++.+.+.|++| |+++..
T Consensus 123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG-G~~vi~ 164 (209)
T PRK11188 123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG-GSFVVK 164 (209)
T ss_pred cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEE
Confidence 533 22 12467888899997 998875
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.11 Score=42.43 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=57.6
Q ss_pred CEEEEEcCChHHHH-HHHHHHHcCCCeEEEEcC-Ccc--hHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 72 SIVAVFGLGTVGLA-VAEGAKAAGASRVIGIDI-DPK--KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 72 ~~vlI~G~g~vG~~-a~~l~~~~g~~~v~~~~~-~~~--~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
-+|.|.|.|.+|.. +..+.+..+. ++.+++. +++ ..++++++|..... .++.+.+.+..-.++|+||++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~v-elvAVvdid~es~gla~A~~~Gi~~~~------~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHL-EPGAMVGIDPESDGLARARRLGVATSA------EGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCc-EEEEEEeCChhhHHHHHHHHcCCCccc------CCHHHHHhCcCCCCCCEEEEC
Confidence 47899999999987 4455554466 7776653 333 33566778864332 333333332101269999999
Q ss_pred CCcHHHHHHHHHHhccCCceEEEE
Q 025257 148 IGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 148 ~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
++.....+....+...| -.++..
T Consensus 78 T~a~~H~e~a~~a~eaG-k~VID~ 100 (302)
T PRK08300 78 TSAGAHVRHAAKLREAG-IRAIDL 100 (302)
T ss_pred CCHHHHHHHHHHHHHcC-CeEEEC
Confidence 99888677777777774 455444
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.036 Score=50.86 Aligned_cols=79 Identities=24% Similarity=0.390 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h----cCCcE----EeCCCCCCchHHHHHHhhc--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N----FGVTE----FVNPKDHDKPIQQVLVDLT-- 137 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~----~g~~~----vi~~~~~~~~~~~~i~~~~-- 137 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++.++.+.+. + .+... ..|-.+ +..+.+.+.+..
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd-~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD-EQAVKAAFADVALA 490 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC-HHHHHHHHHHHHHh
Confidence 4689999997 9999999998888999 9999999877655442 2 23211 123332 123333333322
Q ss_pred CCCccEEEecCCc
Q 025257 138 DGGVDYSFECIGN 150 (255)
Q Consensus 138 ~~~~d~v~d~~g~ 150 (255)
-+++|+++++.|.
T Consensus 491 ~g~iDilV~nAG~ 503 (676)
T TIGR02632 491 YGGVDIVVNNAGI 503 (676)
T ss_pred cCCCcEEEECCCC
Confidence 1379999998884
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.035 Score=49.76 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
.+.++||+|+ |++|...++.+...|+ +|+.++++.++.+.+ ++.|... ..|-.+ ++...+.+.+... +
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSD-ADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence 4578999998 9999999998889999 999999988766554 2334321 123333 1223233333221 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++++.|.
T Consensus 392 ~id~lv~~Ag~ 402 (582)
T PRK05855 392 VPDIVVNNAGI 402 (582)
T ss_pred CCcEEEECCcc
Confidence 69999999885
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.13 Score=41.64 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=62.0
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
+|-++|-|.+|.-.++-+...|. .|.+.++++++ .++++..|+... .+..+... ..|+||-|+...
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~~Ga~~a-------~s~~eaa~-----~aDvVitmv~~~ 68 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAAAGATVA-------ASPAEAAA-----EADVVITMLPDD 68 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHHcCCccc-------CCHHHHHH-----hCCEEEEecCCH
Confidence 57788999999999999999999 99999999999 888888887543 22223333 467777777766
Q ss_pred HHHHHHH-------HHhccCCceEEEEccC
Q 025257 152 SVMRAAL-------ECCHKGWGTSVIVGVA 174 (255)
Q Consensus 152 ~~~~~~~-------~~l~~~~G~~v~~g~~ 174 (255)
...+..+ ..++++ ..++.+...
T Consensus 69 ~~V~~V~~g~~g~~~~~~~G-~i~IDmSTi 97 (286)
T COG2084 69 AAVRAVLFGENGLLEGLKPG-AIVIDMSTI 97 (286)
T ss_pred HHHHHHHhCccchhhcCCCC-CEEEECCCC
Confidence 5444444 233454 566665543
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.038 Score=44.69 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=50.4
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
...++++++|.|+|+.+.+++.-+...|+.+|.++.|++++.+.+.+ ++.+ . . +.+. ...+|+|+
T Consensus 118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~----~----~---~~~~---~~~~dlvI 183 (272)
T PRK12550 118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE----W----R---PDLG---GIEADILV 183 (272)
T ss_pred CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc----c----h---hhcc---cccCCEEE
Confidence 34456789999999999999999999998679999999888777643 3311 1 0 1111 12589999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
+|+..
T Consensus 184 NaTp~ 188 (272)
T PRK12550 184 NVTPI 188 (272)
T ss_pred ECCcc
Confidence 98753
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.05 Score=43.29 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=47.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc-hHH----HHHhcCCc-EE--eCCCCCCchHHHHHHhhcC--CC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-KFD----RAKNFGVT-EF--VNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~----~~~~~g~~-~v--i~~~~~~~~~~~~i~~~~~--~~ 140 (255)
++++|+|+ |++|..+++.+...|+ +|++++++.. +.+ .++..+.. .+ .|..+ +..+.+.+..... +.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF-DLAINDRPDDEELAATQQELRALGVEVIFFPADVAD-LSAHEAMLDAAQAAWGR 80 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHhcCC
Confidence 57999998 9999999999889999 9999987543 221 12223321 11 23333 1233333333322 26
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++.+.|.
T Consensus 81 id~vi~~ag~ 90 (256)
T PRK12745 81 IDCLVNNAGV 90 (256)
T ss_pred CCEEEECCcc
Confidence 9999998874
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.22 Score=36.64 Aligned_cols=85 Identities=22% Similarity=0.252 Sum_probs=57.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
++++|.|+|-|.-|++-++-+|-.|. +|++..+... ..+.+++-|... .++.+.++ ..|+|+-.+
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~-~V~Vglr~~s~s~~~A~~~Gf~v--------~~~~eAv~-----~aDvV~~L~ 68 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV-NVIVGLREGSASWEKAKADGFEV--------MSVAEAVK-----KADVVMLLL 68 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-TTCHHHHHHHHTT-EC--------CEHHHHHH-----C-SEEEE-S
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC-CEEEEecCCCcCHHHHHHCCCee--------ccHHHHHh-----hCCEEEEeC
Confidence 57899999999999999999999999 9998887766 788888888752 34555555 479998777
Q ss_pred CcHH---HH-HHHHHHhccCCceEE
Q 025257 149 GNVS---VM-RAALECCHKGWGTSV 169 (255)
Q Consensus 149 g~~~---~~-~~~~~~l~~~~G~~v 169 (255)
..+. .+ +.+...|+++ -.++
T Consensus 69 PD~~q~~vy~~~I~p~l~~G-~~L~ 92 (165)
T PF07991_consen 69 PDEVQPEVYEEEIAPNLKPG-ATLV 92 (165)
T ss_dssp -HHHHHHHHHHHHHHHS-TT--EEE
T ss_pred ChHHHHHHHHHHHHhhCCCC-CEEE
Confidence 6533 23 4555678884 4444
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.063 Score=43.57 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=44.3
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc----C---Cc-E----EeCCCCCCchHHHHHHhhcCC
Q 025257 74 VAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF----G---VT-E----FVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 74 vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~----g---~~-~----vi~~~~~~~~~~~~i~~~~~~ 139 (255)
|||+|+ |.+|...++-+...++.+++.+++++.+.-.+ +++ . .. . +-|-+ -.+.+......
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvr-----d~~~l~~~~~~ 75 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVR-----DKERLNRIFEE 75 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCC-----HHHHHHHHTT-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeeccc-----CHHHHHHHHhh
Confidence 799987 99999999888888887899999998776666 344 1 11 1 11222 23345555445
Q ss_pred -CccEEEecCCcHH
Q 025257 140 -GVDYSFECIGNVS 152 (255)
Q Consensus 140 -~~d~v~d~~g~~~ 152 (255)
++|+||.++.-++
T Consensus 76 ~~pdiVfHaAA~Kh 89 (293)
T PF02719_consen 76 YKPDIVFHAAALKH 89 (293)
T ss_dssp -T-SEEEE------
T ss_pred cCCCEEEEChhcCC
Confidence 8999999887544
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.12 Score=41.51 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=65.7
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhcC-------CcE--EeCCCCCCchHHHHH
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFG-------VTE--FVNPKDHDKPIQQVL 133 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~g-------~~~--vi~~~~~~~~~~~~i 133 (255)
+...++++++||-.|+|+ |..+..+++..|. .+|++++.+++-.+.+++.. ... ++.... .+ +
T Consensus 67 ~~~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~--~~----l 139 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA--TD----L 139 (261)
T ss_pred HHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc--cc----C
Confidence 445678899999999875 6677777777652 28999999998888775321 111 111110 11 1
Q ss_pred HhhcCCCccEEEecCC------cHHHHHHHHHHhccCCceEEEEccC
Q 025257 134 VDLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 134 ~~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
...++.||.|+-..+ ....+.++.+.|+++ |+++.....
T Consensus 140 -p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG-G~l~i~d~~ 184 (261)
T PLN02233 140 -PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG-SRVSILDFN 184 (261)
T ss_pred -CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC-cEEEEEECC
Confidence 111226999975332 233588999999997 999887654
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.076 Score=41.68 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=57.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh--cCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN--FGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~--~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+++|.|+|.+|...++.+...|. .|+++++++++.+.... .+...+. +..+ + +.+++.--..+|+++=++|
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~--~---~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTHVVIGDATD--E---DVLEEAGIDDADAVVAATG 75 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceEEEEecCCC--H---HHHHhcCCCcCCEEEEeeC
Confidence 58899999999999999999999 99999999999877433 5554433 2222 2 3344441127999998888
Q ss_pred cHHHHHHHHHHh
Q 025257 150 NVSVMRAALECC 161 (255)
Q Consensus 150 ~~~~~~~~~~~l 161 (255)
... .+..+-.+
T Consensus 76 ~d~-~N~i~~~l 86 (225)
T COG0569 76 NDE-VNSVLALL 86 (225)
T ss_pred CCH-HHHHHHHH
Confidence 754 44444333
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.13 Score=43.43 Aligned_cols=94 Identities=15% Similarity=0.251 Sum_probs=62.2
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcC--CcchHH-HHHhcCCcEEeCCCCCCchHHHHH------------
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAA--GASRVIGIDI--DPKKFD-RAKNFGVTEFVNPKDHDKPIQQVL------------ 133 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~--g~~~v~~~~~--~~~~~~-~~~~~g~~~vi~~~~~~~~~~~~i------------ 133 (255)
++|.|.|+ |++|..+++.++.. .+ +|++++. +.++.. .++++++..+.-..+ ...+.+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~---~~~~~l~~~l~~~~~~v~ 77 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSAGKNVELLAEQAREFRPKYVVVADE---EAAKELKEALAAAGIEVL 77 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH---HHHHHHHHhhccCCceEE
Confidence 47899997 99999999988765 46 8888863 333333 346788776543332 211222
Q ss_pred ------HhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEE
Q 025257 134 ------VDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVI 170 (255)
Q Consensus 134 ------~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~ 170 (255)
.++... .+|+|+.+.++...+.-.+..++.| -++.+
T Consensus 78 ~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL 120 (385)
T PRK05447 78 AGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL 120 (385)
T ss_pred EChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence 222223 5999999998876688888889885 55554
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.11 Score=45.21 Aligned_cols=87 Identities=22% Similarity=0.202 Sum_probs=54.4
Q ss_pred EEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 73 IVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKF-DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 73 ~vlI~G-~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+|.|.| .|.+|.+.+..++..|. +|+++++++++. +.+.+.|+.. . .+..+.+. .+|+|+-|+..
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~~~gv~~-~------~~~~e~~~-----~aDvVIlavp~ 68 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAKELGVEY-A------NDNIDAAK-----DADIVIISVPI 68 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHcCCee-c------cCHHHHhc-----cCCEEEEecCH
Confidence 588998 49999999999999998 999999887764 4556667531 1 12222221 46777777665
Q ss_pred HHH---HHHHHHHhccCCceEEEEcc
Q 025257 151 VSV---MRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 151 ~~~---~~~~~~~l~~~~G~~v~~g~ 173 (255)
... ++.....++++ ..++.++.
T Consensus 69 ~~~~~vl~~l~~~l~~~-~iViDvsS 93 (437)
T PRK08655 69 NVTEDVIKEVAPHVKEG-SLLMDVTS 93 (437)
T ss_pred HHHHHHHHHHHhhCCCC-CEEEEccc
Confidence 431 22223334443 45555554
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.048 Score=47.49 Aligned_cols=71 Identities=23% Similarity=0.191 Sum_probs=48.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcch----HHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK----FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~----~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
.+.+++|+|+|++|++++++++..|+ +|++.+.+... .+.+++.|......... .+. +. .++|+|+
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~---~~----~~~d~vV 73 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIKVICGSHP--LEL---LD----EDFDLMV 73 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCEEEeCCCC--HHH---hc----CcCCEEE
Confidence 36789999998899999999999999 99999865422 23455567654332221 221 11 1488888
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
.+.|-
T Consensus 74 ~s~gi 78 (447)
T PRK02472 74 KNPGI 78 (447)
T ss_pred ECCCC
Confidence 87764
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.045 Score=43.45 Aligned_cols=74 Identities=30% Similarity=0.330 Sum_probs=47.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC--cE-EeCCCCCCchHHHHHHhhcC--CCccE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV--TE-FVNPKDHDKPIQQVLVDLTD--GGVDY 143 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~--~~-vi~~~~~~~~~~~~i~~~~~--~~~d~ 143 (255)
+++++||+|+ |.+|...++.+...|+ +|++++++. ....+. .. ..|-.+ ++.+.+.+.+... +.+|+
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~-----~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~ 79 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF-----LTQEDYPFATFVLDVSD-AAAVAQVCQRLLAETGPLDV 79 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch-----hhhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 4678999997 8999999998888999 999999875 222221 11 123332 1223333333221 26899
Q ss_pred EEecCCc
Q 025257 144 SFECIGN 150 (255)
Q Consensus 144 v~d~~g~ 150 (255)
++.+.|.
T Consensus 80 vi~~ag~ 86 (252)
T PRK08220 80 LVNAAGI 86 (252)
T ss_pred EEECCCc
Confidence 9998874
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.037 Score=45.02 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=37.8
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 112 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~ 112 (255)
.++++++|+|+|+.+.+++.-+...|+.+++++.|+.++.+.+.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 34679999999999999998888899878999999988877764
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.26 Score=34.21 Aligned_cols=88 Identities=20% Similarity=0.332 Sum_probs=60.6
Q ss_pred EEEEEcCChHHHHHHHHHHHc--CCCeEEEE-cCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAA--GASRVIGI-DIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~-~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
+|.|.|.|..|.....-++.. +. +++++ ++++++.+.+ +++|.. .+ .++.+.+.+. .+|+|+.++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~-~~------~~~~~ll~~~---~~D~V~I~t 70 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIP-VY------TDLEELLADE---DVDAVIIAT 70 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSE-EE------SSHHHHHHHT---TESEEEEES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhccc-ch------hHHHHHHHhh---cCCEEEEec
Confidence 588999999998887666655 45 66654 5566666654 667877 44 3344444432 699999999
Q ss_pred CcHHHHHHHHHHhccCCceEEEEcc
Q 025257 149 GNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
......+.+..++..+ .-+.+..
T Consensus 71 p~~~h~~~~~~~l~~g--~~v~~EK 93 (120)
T PF01408_consen 71 PPSSHAEIAKKALEAG--KHVLVEK 93 (120)
T ss_dssp SGGGHHHHHHHHHHTT--SEEEEES
T ss_pred CCcchHHHHHHHHHcC--CEEEEEc
Confidence 9887788888888884 4555533
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.061 Score=43.03 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=48.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|...++.+...|+ +|+.+.++. +..+.+ +..+... ..|-.+ .....+.+.+...
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~ 83 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTV-ESDVVNLIQTAVKEF 83 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence 5789999997 9999999999999999 888877643 222222 2234321 124333 1222222332221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 84 g~id~lv~~ag~ 95 (261)
T PRK08936 84 GTLDVMINNAGI 95 (261)
T ss_pred CCCCEEEECCCC
Confidence 269999998884
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.098 Score=42.37 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=61.2
Q ss_pred HHhhcCCC-CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC
Q 025257 62 VWNTAKVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 62 l~~~~~~~-~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
+.+..++. .|++|+|.|. +.+|.-.+.++...|+ .|++..+ +. .++.+.++
T Consensus 148 lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs-------------------~t--~~l~~~~~----- 200 (285)
T PRK14189 148 MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHS-------------------KT--RDLAAHTR----- 200 (285)
T ss_pred HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecC-------------------CC--CCHHHHhh-----
Confidence 44555543 7899999998 5669999999999999 8887432 12 44444444
Q ss_pred CccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 140 GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 140 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
..|+|+-++|.+..+. -++++++ ..++.+|..
T Consensus 201 ~ADIVV~avG~~~~i~--~~~ik~g-avVIDVGin 232 (285)
T PRK14189 201 QADIVVAAVGKRNVLT--ADMVKPG-ATVIDVGMN 232 (285)
T ss_pred hCCEEEEcCCCcCccC--HHHcCCC-CEEEEcccc
Confidence 4899999999887333 3889996 899999864
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.063 Score=44.21 Aligned_cols=93 Identities=15% Similarity=0.045 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHH-HcCCCeEEEEcCCcchHHHH-HhcC---CcEEeCCCCCCchHHHHHHhhcCCCccE
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRA-KNFG---VTEFVNPKDHDKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~-~~g~~~v~~~~~~~~~~~~~-~~~g---~~~vi~~~~~~~~~~~~i~~~~~~~~d~ 143 (255)
....+++|.|+|..|.+.++.+. ..+..+|.+..+++++.+.+ .++. ..... .+..+.++ .+|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~------~~~~~av~-----~aDi 191 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEP------LDGEAIPE-----AVDL 191 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEE------CCHHHHhh-----cCCE
Confidence 45678999999999998887775 46776899999998877665 3332 22111 23434443 5999
Q ss_pred EEecCCcHHHHHHHHHHhccCCceEEEEccCC
Q 025257 144 SFECIGNVSVMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 144 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
|+.|+.++.-+-.. .++++ -++..+|...
T Consensus 192 VitaT~s~~Pl~~~--~~~~g-~hi~~iGs~~ 220 (304)
T PRK07340 192 VVTATTSRTPVYPE--AARAG-RLVVAVGAFT 220 (304)
T ss_pred EEEccCCCCceeCc--cCCCC-CEEEecCCCC
Confidence 99988865422222 37886 7888888764
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.05 Score=41.12 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=28.0
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
++||+|+ |++|+..++.+...|.++++.+.++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~ 34 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRS 34 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccC
Confidence 6899987 9999999999999988799999988
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.12 Score=42.14 Aligned_cols=93 Identities=20% Similarity=0.208 Sum_probs=64.5
Q ss_pred ccccchhhhhhHHHhhcCC-CCCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHHHhcCCcEEeCCCCCC
Q 025257 50 LLGCGVPTGLGAVWNTAKV-EPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGID-IDPKKFDRAKNFGVTEFVNPKDHD 126 (255)
Q Consensus 50 ~~~~~~~ta~~~l~~~~~~-~~~~~vlI~G-~g~vG~~a~~l~~~~g~~~v~~~~-~~~~~~~~~~~~g~~~vi~~~~~~ 126 (255)
.+||+....+. +.+...+ -.|++|+|+| .+.+|.-.+.++...|+ .|++.. +++
T Consensus 137 ~~PcTp~ai~~-ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~--------------------- 193 (296)
T PRK14188 137 LVPCTPLGCMM-LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR--------------------- 193 (296)
T ss_pred CcCCCHHHHHH-HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC---------------------
Confidence 34544333332 4455554 4789999999 49999999999999999 888874 332
Q ss_pred chHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 127 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 127 ~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++.+.++ ..|+|+-++|.+..++..+ +++| ..++.+|..
T Consensus 194 -~l~e~~~-----~ADIVIsavg~~~~v~~~~--lk~G-avVIDvGin 232 (296)
T PRK14188 194 -DLPAVCR-----RADILVAAVGRPEMVKGDW--IKPG-ATVIDVGIN 232 (296)
T ss_pred -CHHHHHh-----cCCEEEEecCChhhcchhe--ecCC-CEEEEcCCc
Confidence 1222222 4899999999988556554 8886 888888874
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.026 Score=47.16 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=31.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
++.+|||+|+ |.+|..+++.+...|. +|++++++++
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~~~ 41 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRRSS 41 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEecccc
Confidence 3578999997 9999999999999999 9999987643
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.073 Score=48.19 Aligned_cols=92 Identities=10% Similarity=0.099 Sum_probs=65.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeC-CCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN-PKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
++|+|.|.|.+|+..++.++..|. ++++++.++++.+.+++.|...++- ..+ + +.+++..-+.+|.++-+.+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~--~---~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYYGDATQ--L---ELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEEeeCCC--H---HHHHhcCCccCCEEEEEeCC
Confidence 589999999999999999999999 9999999999999999988765542 222 2 23333322279999988888
Q ss_pred HHHHHHHH---HHhccCCceEEE
Q 025257 151 VSVMRAAL---ECCHKGWGTSVI 170 (255)
Q Consensus 151 ~~~~~~~~---~~l~~~~G~~v~ 170 (255)
...-..+. +...++ -+++.
T Consensus 475 ~~~n~~i~~~~r~~~p~-~~Iia 496 (601)
T PRK03659 475 PEDTMKIVELCQQHFPH-LHILA 496 (601)
T ss_pred HHHHHHHHHHHHHHCCC-CeEEE
Confidence 66333333 334443 45443
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.074 Score=42.58 Aligned_cols=78 Identities=12% Similarity=0.225 Sum_probs=47.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH-Hh----cCCc-E--EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA-KN----FGVT-E--FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~-~~----~g~~-~--vi~~~~~~~~~~~~i~~~~~- 138 (255)
+++++||+|+ +++|.+.++.+...|+ +|+.+.+ ++++.+.+ ++ .+.. . ..|-.+ ++.+.+.+.+...
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 84 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILE-PETYKELFKKIDED 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHh
Confidence 5689999998 8999999998889999 8888764 34443322 21 2321 1 124333 1233333333221
Q ss_pred -CCccEEEecCC
Q 025257 139 -GGVDYSFECIG 149 (255)
Q Consensus 139 -~~~d~v~d~~g 149 (255)
+.+|+++++.|
T Consensus 85 ~g~id~lv~nAg 96 (260)
T PRK08416 85 FDRVDFFISNAI 96 (260)
T ss_pred cCCccEEEECcc
Confidence 36899998875
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.087 Score=43.95 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
.++.+||-.|+|. |..+..+++..+..+|++++.+++-.+.+++.....-+.... .+.. .+ ....+.||+|+.+.
T Consensus 112 ~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~--gD~e-~l-p~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIE--GDAE-DL-PFPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEe--ccHH-hC-CCCCCceeEEEEcC
Confidence 4678999999875 777777787765349999999988777776532110011111 1111 11 11123699988532
Q ss_pred C------cHHHHHHHHHHhccCCceEEEEcc
Q 025257 149 G------NVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g------~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
. ....++.+.+.|+++ |+++..+.
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPG-G~LvIi~~ 216 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIG-GKACLIGP 216 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 1 233578999999997 99987754
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.07 Score=42.22 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=47.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
++.+++|+|+ |.+|..+++.+...|+ +|+++.+ ++++.+.+ ++.+... . .|..+ +..+.+.+.+...
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 82 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEGA-KVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSK-VEDANRLVEEAVNHF 82 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 3689999997 9999999998888999 8877654 33433332 2333221 1 23322 1233333333222
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+.+|+++.+.|.
T Consensus 83 ~~id~vi~~ag~ 94 (247)
T PRK12935 83 GKVDILVNNAGI 94 (247)
T ss_pred CCCCEEEECCCC
Confidence 268999998875
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.062 Score=42.26 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=46.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH-Hh---cCCc--E-EeCCCCCCchHHHHHHhhc--CCC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA-KN---FGVT--E-FVNPKDHDKPIQQVLVDLT--DGG 140 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~-~~---~g~~--~-vi~~~~~~~~~~~~i~~~~--~~~ 140 (255)
+++||+|+ |++|...++.+...|+ +|+++.+ ++++.+.. .+ .+.. . ..|..+ +..+.+.+.+.. .+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 78 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSS-FESCKAAVAKVEAELGP 78 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence 36899997 9999999999999999 9988887 44333222 22 2211 1 123332 122333333222 136
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++.+.|.
T Consensus 79 id~vi~~ag~ 88 (242)
T TIGR01829 79 IDVLVNNAGI 88 (242)
T ss_pred CcEEEECCCC
Confidence 8999998874
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.028 Score=46.51 Aligned_cols=70 Identities=21% Similarity=0.161 Sum_probs=47.3
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+|+|+|+ |.+|..+++.+...|. +|+++++++++...+.+.+...+. |..+ . +.+.+... ++|+|+++.+
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~~--~---~~l~~~~~-~~d~vi~~a~ 73 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRPTSDRRNLEGLDVEIVEGDLRD--P---ASLRKAVA-GCRALFHVAA 73 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEecCccccccccCCceEEEeeCCC--H---HHHHHHHh-CCCEEEEece
Confidence 6899997 9999999999999999 999999887665444334444332 3322 2 22333222 5899998775
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.074 Score=44.71 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=35.2
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 111 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~ 111 (255)
-..+.+|||+|+ |-+|..+++.+...|. +|++++++.++.+.+
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDPAKSLHL 50 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence 345679999997 9999999999999999 999988876655443
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.081 Score=41.67 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=47.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHH----HhcCCc--EE-eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRA----KNFGVT--EF-VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~~----~~~g~~--~v-i~~~~~~~~~~~~i~~~~~-- 138 (255)
+..++||+|+ |.+|..+++.+...|. +|+++.++..+ .+.+ +..+.. .+ .|..+ +..+.+.+.+...
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 82 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA-DVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTD-KAALEAAVAAAVERF 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCC-HHHHHHHHHHHHHHc
Confidence 3468999998 9999999999999999 87776655443 2222 222322 11 23332 1223333322211
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+++|.++.+.|
T Consensus 83 ~~id~vi~~ag 93 (249)
T PRK12825 83 GRIDILVNNAG 93 (249)
T ss_pred CCCCEEEECCc
Confidence 26999999887
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.22 Score=40.91 Aligned_cols=43 Identities=21% Similarity=0.361 Sum_probs=37.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 116 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~ 116 (255)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~ 44 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRT 44 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence 57889999999998888888898 99999999999988887664
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.071 Score=44.05 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=54.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+.+|.|+|.|.+|...++.++..|. +|++.+++.++.. +..... .. .++.+.+. ..|+|+.+..
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~-----~~~~~~--~~--~~l~e~l~-----~aDvvv~~lP 199 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWP-----GVQSFA--GR--EELSAFLS-----QTRVLINLLP 199 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCC-----Cceeec--cc--ccHHHHHh-----cCCEEEECCC
Confidence 57899999999999999999999999 9999987654321 111111 00 22333332 3677766555
Q ss_pred cHHH-----HHHHHHHhccCCceEEEEcc
Q 025257 150 NVSV-----MRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~~~-----~~~~~~~l~~~~G~~v~~g~ 173 (255)
.... -...+..|+++ ..+|.+|-
T Consensus 200 lt~~T~~li~~~~l~~mk~g-a~lIN~aR 227 (312)
T PRK15469 200 NTPETVGIINQQLLEQLPDG-AYLLNLAR 227 (312)
T ss_pred CCHHHHHHhHHHHHhcCCCC-cEEEECCC
Confidence 3221 13455666775 66666643
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.077 Score=42.45 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=48.8
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCc--chHHHH-HhcCC--cE-EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP--KKFDRA-KNFGV--TE-FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~--~~~~~~-~~~g~--~~-vi~~~~~~~~~~~~i~~~~~-- 138 (255)
.+++++|+|+ +++|.+.++.+...|+ +|+.++++. +..+.+ .+++. .. ..|-.+ ++...+.+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~~ 83 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLPEPAPVLELDVTN-EEHLASLADRVREHV 83 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcCCCCcEEeCCCCC-HHHHHHHHHHHHHHc
Confidence 4678999985 6999999998888999 999988653 333333 33432 11 133333 1223222322221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 84 g~iD~li~nAG~ 95 (256)
T PRK07889 84 DGLDGVVHSIGF 95 (256)
T ss_pred CCCcEEEEcccc
Confidence 379999998874
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.17 Score=41.51 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=37.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 116 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~ 116 (255)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~~g~ 45 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVDKGA 45 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHcCC
Confidence 68889999999999888888898 99999999999888877664
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.066 Score=42.10 Aligned_cols=104 Identities=23% Similarity=0.249 Sum_probs=64.8
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhcCCc----EEeCCCCCCchHHHHHHhhc
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAKNFGVT----EFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~~g~~----~vi~~~~~~~~~~~~i~~~~ 137 (255)
......++.+||..|+|. |..+..+++..+ . ++++++.+++..+.+++.-.. ..++... .+..+ . ...
T Consensus 45 ~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~-~-~~~ 118 (239)
T PRK00216 45 KWLGVRPGDKVLDLACGT-GDLAIALAKAVGKTG-EVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQ--GDAEA-L-PFP 118 (239)
T ss_pred HHhCCCCCCeEEEeCCCC-CHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHHhhcccccccCeEEEe--ccccc-C-CCC
Confidence 444566788999999876 778888888775 6 999999988877777553211 0011110 11111 0 011
Q ss_pred CCCccEEEecCC------cHHHHHHHHHHhccCCceEEEEccC
Q 025257 138 DGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 138 ~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.+.+|+|+.... ....+..+.++++++ |+++.+...
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~g-G~li~~~~~ 160 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPG-GRLVILEFS 160 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCC-cEEEEEEec
Confidence 236899874221 233478888999997 998877553
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.2 Score=43.16 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=52.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhh---------cCC-Cc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDL---------TDG-GV 141 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~---------~~~-~~ 141 (255)
.+|.|+|.|-+|+..+..+...|. +|+++++++++.+.++.-.. .+ .+ +.+.+.+++. +.- ..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~-~~---~e--~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEI-HI---VE--PDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCC-Cc---CC--CCHHHHHHHHhhcCceeeecccccC
Confidence 579999999999999998888998 99999999999887654322 12 22 4444443321 111 58
Q ss_pred cEEEecCCcH
Q 025257 142 DYSFECIGNV 151 (255)
Q Consensus 142 d~v~d~~g~~ 151 (255)
|++|-|++.+
T Consensus 77 Dvvii~vptp 86 (415)
T PRK11064 77 DAFLIAVPTP 86 (415)
T ss_pred CEEEEEcCCC
Confidence 9999999975
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.12 Score=44.13 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=58.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEEeC-CCCCCchHHHHHHhhcCC-CccEEEe
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVN-PKDHDKPIQQVLVDLTDG-GVDYSFE 146 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~-~~~~~~~~~~~i~~~~~~-~~d~v~d 146 (255)
..+|||+|+ .+.|+..++.++..|. +|++++.++...... +-......+. ++.+++.+.+.+.++... ++|+++-
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP 82 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIP 82 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 478999998 5789999999999999 999999876443221 1111112232 222225577777776655 8999997
Q ss_pred cCCcHHHHHHHHHHhcc
Q 025257 147 CIGNVSVMRAALECCHK 163 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~ 163 (255)
+......+......+..
T Consensus 83 ~~e~~~~~a~~~~~l~~ 99 (389)
T PRK06849 83 TCEEVFYLSHAKEELSA 99 (389)
T ss_pred CChHHHhHHhhhhhhcC
Confidence 76543222233344555
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.065 Score=42.59 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH-Hh---cCCc-EE--eCCCCCCchHHHHHHhhc---
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRA-KN---FGVT-EF--VNPKDHDKPIQQVLVDLT--- 137 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~~~~~~~~~~-~~---~g~~-~v--i~~~~~~~~~~~~i~~~~--- 137 (255)
.+.+++|+|+ |.+|..+++.+...|+ +|++. .++.++.+.+ .+ .+.. .+ .|-.+ ++.+.+.+.+..
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNS-IDGVKKLVEQLKNEL 82 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCC-HHHHHHHHHHHHHHh
Confidence 3578999997 9999999998888999 88765 5665554333 22 2321 11 23333 123333333321
Q ss_pred ----C-CCccEEEecCCc
Q 025257 138 ----D-GGVDYSFECIGN 150 (255)
Q Consensus 138 ----~-~~~d~v~d~~g~ 150 (255)
+ +++|+++.+.|.
T Consensus 83 ~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGI 100 (254)
T ss_pred ccccCCCCccEEEECCCC
Confidence 1 268999998874
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.058 Score=42.73 Aligned_cols=75 Identities=25% Similarity=0.367 Sum_probs=47.2
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-cchHHHHH-hc----CCcE----EeCCCCCCchHHHHHHhhcC--CC
Q 025257 74 VAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFDRAK-NF----GVTE----FVNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 74 vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~-~~~~~~~~-~~----g~~~----vi~~~~~~~~~~~~i~~~~~--~~ 140 (255)
++|+|+ |++|...++.+...|+ +|++++++ .++.+.+. ++ +... ..|..+ ++.+.+.+.+... ++
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGA-KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTD-EAQWQALLAQAADAMGG 79 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCC-HHHHHHHHHHHHHHcCC
Confidence 789987 9999999999988999 99999987 55444332 21 2111 123332 1333333333221 36
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++.+.|.
T Consensus 80 id~vi~~ag~ 89 (251)
T PRK07069 80 LSVLVNNAGV 89 (251)
T ss_pred ccEEEECCCc
Confidence 8999998873
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 255 | ||||
| 4dl9_A | 396 | Crystal Structure Of S-nitrosoglutathione Reductase | 1e-129 | ||
| 3uko_A | 378 | Crystal Structure Of S-Nitrosoglutathione Reductase | 1e-127 | ||
| 1teh_A | 373 | Structure Of Human Liver Chichi Alcohol Dehydrogena | 9e-92 | ||
| 3qj5_A | 374 | S-Nitrosoglutathione Reductase (Gsnor) In Complex W | 9e-92 | ||
| 2fzw_A | 373 | Structure Of The Binary Complex Of The E67l Mutant | 9e-92 | ||
| 1mc5_A | 374 | Ternary Complex Of Human Glutathione-Dependent Form | 9e-92 | ||
| 1cdo_A | 374 | Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co | 3e-80 | ||
| 1hdx_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 3e-73 | ||
| 1hdy_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 4e-73 | ||
| 1hdz_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 4e-73 | ||
| 1htb_A | 374 | Crystallization Of Human Beta3 Alcohol Dehydrogenas | 4e-72 | ||
| 1hso_A | 374 | Human Alpha Alcohol Dehydrogenase (Adh1a) Length = | 1e-71 | ||
| 1ee2_A | 373 | The Structure Of Steroid-Active Alcohol Dehydrogena | 2e-71 | ||
| 1ee2_B | 373 | The Structure Of Steroid-Active Alcohol Dehydrogena | 2e-71 | ||
| 1mgo_A | 374 | Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L | 2e-71 | ||
| 6adh_A | 374 | Structure Of Triclinic Ternary Complex Of Horse Liv | 2e-71 | ||
| 3oq6_A | 374 | Horse Liver Alcohol Dehydrogenase A317c Mutant Comp | 3e-71 | ||
| 1axe_A | 374 | Crystal Structure Of The Active-Site Mutant Phe93-> | 3e-71 | ||
| 1qv6_A | 374 | Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG | 5e-71 | ||
| 1axg_A | 374 | Crystal Structure Of The Val203->ala Mutant Of Live | 7e-71 | ||
| 1qlh_A | 374 | Horse Liver Alcohol Dehydrogenase Complexed To Nad | 7e-71 | ||
| 1n8k_A | 374 | Horse Liver Alcohol Dehydrogenase Val292thr Mutant | 7e-71 | ||
| 1a71_A | 374 | Ternary Complex Of An Active Site Double Mutant Of | 8e-71 | ||
| 1ju9_A | 374 | Horse Liver Alcohol Dehydrogenase Val292ser Mutant | 1e-70 | ||
| 1ht0_A | 374 | Human Gamma-2 Alcohol Dehydrogense Length = 374 | 2e-70 | ||
| 3cos_A | 381 | Crystal Structure Of Human Class Ii Alcohol Dehydro | 4e-69 | ||
| 1agn_A | 373 | X-Ray Structure Of Human Sigma Alcohol Dehydrogenas | 4e-64 | ||
| 1d1t_A | 373 | Mutant Of Human Sigma Alcohol Dehydrogenase With Le | 1e-63 | ||
| 1p0c_A | 373 | Crystal Structure Of The Nadp(H)-Dependent Vertebra | 3e-62 | ||
| 1e3l_A | 376 | P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase | 4e-61 | ||
| 1e3e_A | 376 | Mouse Class Ii Alcohol Dehydrogenase Complex With N | 4e-61 | ||
| 1f8f_A | 371 | Crystal Structure Of Benzyl Alcohol Dehydrogenase F | 3e-19 | ||
| 2nvb_A | 352 | Contribution Of Pro275 To The Thermostability Of Th | 1e-10 | ||
| 1ykf_A | 352 | Nadp-Dependent Alcohol Dehydrogenase From Thermoana | 1e-10 | ||
| 3fpl_A | 351 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 5e-10 | ||
| 1h2b_A | 359 | Crystal Structure Of The Alcohol Dehydrogenase From | 4e-06 | ||
| 3qe3_A | 355 | Sheep Liver Sorbitol Dehydrogenase Length = 355 | 7e-06 | ||
| 1vj0_A | 380 | Crystal Structure Of Alcohol Dehydrogenase (Tm0436) | 1e-05 | ||
| 4ej6_A | 370 | Crystal Structure Of A Putative Zinc-Binding Dehydr | 5e-05 | ||
| 3ftn_A | 352 | Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO | 8e-05 | ||
| 1jqb_A | 351 | Alcohol Dehydrogenase From Clostridium Beijerinckii | 2e-04 | ||
| 1pl7_A | 356 | Human Sorbitol Dehydrogenase (Apo) Length = 356 | 2e-04 | ||
| 3fsr_A | 352 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 2e-04 | ||
| 2dq4_A | 343 | Crystal Structure Of Threonine 3-Dehydrogenase Leng | 4e-04 | ||
| 1pl6_A | 356 | Human SdhNADHINHIBITOR COMPLEX Length = 356 | 8e-04 | ||
| 1ped_A | 351 | Bacterial Secondary Alcohol Dehydrogenase (Apo-Form | 8e-04 |
| >pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396 | Back alignment and structure |
|
| >pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378 | Back alignment and structure |
|
| >pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373 | Back alignment and structure |
|
| >pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374 | Back alignment and structure |
|
| >pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373 | Back alignment and structure |
|
| >pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374 | Back alignment and structure |
|
| >pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374 | Back alignment and structure |
|
| >pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374 | Back alignment and structure |
|
| >pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374 | Back alignment and structure |
|
| >pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373 | Back alignment and structure |
|
| >pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373 | Back alignment and structure |
|
| >pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374 | Back alignment and structure |
|
| >pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374 | Back alignment and structure |
|
| >pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374 | Back alignment and structure |
|
| >pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374 | Back alignment and structure |
|
| >pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374 | Back alignment and structure |
|
| >pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374 | Back alignment and structure |
|
| >pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374 | Back alignment and structure |
|
| >pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374 | Back alignment and structure |
|
| >pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374 | Back alignment and structure |
|
| >pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374 | Back alignment and structure |
|
| >pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381 | Back alignment and structure |
|
| >pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373 | Back alignment and structure |
|
| >pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373 | Back alignment and structure |
|
| >pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373 | Back alignment and structure |
|
| >pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376 | Back alignment and structure |
|
| >pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376 | Back alignment and structure |
|
| >pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371 | Back alignment and structure |
|
| >pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352 | Back alignment and structure |
|
| >pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352 | Back alignment and structure |
|
| >pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351 | Back alignment and structure |
|
| >pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359 | Back alignment and structure |
|
| >pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355 | Back alignment and structure |
|
| >pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380 | Back alignment and structure |
|
| >pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370 | Back alignment and structure |
|
| >pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352 | Back alignment and structure |
|
| >pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351 | Back alignment and structure |
|
| >pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356 | Back alignment and structure |
|
| >pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352 | Back alignment and structure |
|
| >pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343 | Back alignment and structure |
|
| >pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356 | Back alignment and structure |
|
| >pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373 | Back alignment and structure |
|---|
Score = 478 bits (1232), Expect = e-172
Identities = 178/253 (70%), Positives = 208/253 (82%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 180
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAK+EPGS+ AVFGLG VGLAV G K AGASR+IG+DI+ KF RAK FG TE +
Sbjct: 181 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI 240
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI
Sbjct: 241 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEI 300
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VTHN++ EIN+AF
Sbjct: 301 ATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFEL 360
Query: 241 MHGGDCLRCVLKM 253
MH G +R V+K+
Sbjct: 361 MHSGKSIRTVVKI 373
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374 | Back alignment and structure |
|---|
Score = 475 bits (1224), Expect = e-171
Identities = 135/251 (53%), Positives = 175/251 (69%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G
Sbjct: 122 TMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
+ AKV GS AVFGLG VGL+V G KAAGA+R+IG+DI+ KF +AK G TE V
Sbjct: 182 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVIVGV Q +
Sbjct: 242 NPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNL 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
S P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F
Sbjct: 302 SMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDL 361
Query: 241 MHGGDCLRCVL 251
+ G+ +R +L
Sbjct: 362 LRSGESIRTIL 372
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374 | Back alignment and structure |
|---|
Score = 468 bits (1206), Expect = e-168
Identities = 144/253 (56%), Positives = 187/253 (73%), Gaps = 1/253 (0%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M+ +++RF+ G+ + F+GTSTFSQYTVV+ ++VAKIDP APLD VCLLGCGV TG G
Sbjct: 123 VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFG 182
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG VGLA G +AGA R+I +D++P KF++AK FG T+FV
Sbjct: 183 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFV 242
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP DH +PI QVL +T+GGVD+S EC+GNV VMR ALE C KGWG SV+VG ++
Sbjct: 243 NPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL-HDV 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRP QL+ GR WKG+ FGGFK + VP +V Y+ K++K+DE++TH M L +N+A
Sbjct: 302 ATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDL 361
Query: 241 MHGGDCLRCVLKM 253
M G C+R VL +
Sbjct: 362 MKHGKCIRTVLSL 374
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376 | Back alignment and structure |
|---|
Score = 465 bits (1198), Expect = e-167
Identities = 120/252 (47%), Positives = 164/252 (65%), Gaps = 2/252 (0%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M DR SRF+ G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GCG +G G
Sbjct: 126 LMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYG 185
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKV PGS AVFGLG VGL+ G K AGASR+I IDI+ +KF +AK G T+ +
Sbjct: 186 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL 245
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP++ DKP+Q V+ +LT GGVDYS +C G ++AA++C GWG+ +VG E+
Sbjct: 246 NPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK--VDEM 303
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+ ++ GR GT FGG+KS VP LV Y K+ +D VTH + IN+A
Sbjct: 304 TIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDL 363
Query: 241 MHGGDCLRCVLK 252
M G +R +L
Sbjct: 364 MKEGKSIRTILT 375
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373 | Back alignment and structure |
|---|
Score = 460 bits (1185), Expect = e-165
Identities = 128/252 (50%), Positives = 172/252 (68%), Gaps = 2/252 (0%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GKPIY+ MGTSTF++YTVV D++VAKIDP+APL+ CL+GCG TG G
Sbjct: 123 LMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFATGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKV PGS AVFGLG VG + G KAAGASR+IG+ KF +A G TE +
Sbjct: 182 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECL 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKD+DKPI +V+ + T+GGVDY+ EC G + M AL+ + G G +V++G+A+ + +
Sbjct: 242 NPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERL 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
P L+TGR KG+ FGGFK +V LVD YMKK+I V+ V+ +TL +IN+AF
Sbjct: 302 PLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFEL 360
Query: 241 MHGGDCLRCVLK 252
+ G +R ++
Sbjct: 361 LSSGQGVRSIMI 372
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371 | Back alignment and structure |
|---|
Score = 397 bits (1023), Expect = e-140
Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 7/255 (2%)
Query: 2 MNDRKSRFSINGKPIY--HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGL 59
++ + + + HF S+F+ Y + + + K+ P++ + LGCG+ TG
Sbjct: 120 DSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGA 179
Query: 60 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 119
GA N KV P S +G G VGL+ AK GAS +I +DI + + AK G T
Sbjct: 180 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHV 239
Query: 120 VNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 179
+N K D + ++TDGGV+++ E G+ +++ ++ G +VG G
Sbjct: 240 INSKTQD--PVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTT 296
Query: 180 ISTRPFQL-VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 238
L + G+ G G + +P LV Y + + D+ V EIN+A
Sbjct: 297 AQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAA 355
Query: 239 RYMHGGDCLRCVLKM 253
G L+ ++K+
Sbjct: 356 IDSRKGITLKPIIKI 370
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380 | Back alignment and structure |
|---|
Score = 348 bits (895), Expect = e-121
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 18/259 (6%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPTGL 59
+N S + H G +S + V+ + V K+ + LD + + C T
Sbjct: 134 GINRGCSEYP-------HLRGC--YSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAY 184
Query: 60 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 119
A + G V + G G +GL A++ GA VI I P + A+ G
Sbjct: 185 HAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLT 244
Query: 120 VNPKDHD-KPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 177
+N ++ + ++ ++D+T G G D+ E G+ + E +G G + GVA
Sbjct: 245 LNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQ 303
Query: 178 QEISTRPFQLVTGRVWKGTAFGG--FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEIN 235
+ PF++ V K F G S V + + + +TH + L E N
Sbjct: 304 DPV---PFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKEAN 360
Query: 236 EAFRYMHGGDCLRCVLKMQ 254
+A M + L+ +L +
Sbjct: 361 KALELMESREALKVILYPE 379
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 5e-43
Identities = 48/231 (20%), Positives = 82/231 (35%), Gaps = 14/231 (6%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKV-CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTV 82
+ ++Y +V L G+ + PGS V G+G +
Sbjct: 124 SMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGL 183
Query: 83 GLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GV 141
G + +A A+RVI +D+D + A+ G V + +LT G G
Sbjct: 184 GHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG--AGAADAIR-ELTGGQGA 240
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 201
F+ +G S + A + G +VG+ A F + G +G
Sbjct: 241 TAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGAHAKVG-FFMIPFGASVVTPYWG-- 296
Query: 202 KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251
+RS++ +V + + T TL E A+R + G R V+
Sbjct: 297 -TRSELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIRGRGVV 343
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-39
Identities = 55/244 (22%), Positives = 97/244 (39%), Gaps = 18/244 (7%)
Query: 17 YHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEP 70
+G F++Y +V +I L C + V + + ++
Sbjct: 128 LRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL----HGV-DLSGIKA 182
Query: 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 130
GS VA+ G G +GL + A+ AGA+ VI K A+ G T V+P D ++
Sbjct: 183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGD-VVE 241
Query: 131 QV--LVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV 188
+ V L GGVD EC G ++ + G GT VI+GV G+++ PF ++
Sbjct: 242 AIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDIL 300
Query: 189 TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLR 248
+ G F + D I++D ++ ++L E + ++
Sbjct: 301 FREL---RVLGSFINPFVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVK 357
Query: 249 CVLK 252
++
Sbjct: 358 VLVI 361
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 4e-38
Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 19/249 (7%)
Query: 17 YHFMGTS--TFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGS 72
+ F F ++ V+ D+++A + + PL+ ++ + TG A ++ G
Sbjct: 110 WKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAEL-ANIKLGD 168
Query: 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQV 132
V V G+G VGL GA GA R+ + D A +G T+ +N K+ D ++Q+
Sbjct: 169 TVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGD-IVEQI 227
Query: 133 LVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 191
L TDG GVD G+V A++ G V G I
Sbjct: 228 L-KATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNI---DIPRSEWG 282
Query: 192 VWKG--TAFGGFKS--RSQVPWLVDKYMKKEIKVDEYVTHNMT-LGEINEAFRYM--HGG 244
V G GG R ++ L+D K + + VTH I +AF M
Sbjct: 283 VGMGHKHIHGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPK 342
Query: 245 DCLRCVLKM 253
D ++ V+ +
Sbjct: 343 DLIKPVVIL 351
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-37
Identities = 49/250 (19%), Positives = 90/250 (36%), Gaps = 26/250 (10%)
Query: 17 YHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEP 70
Y F+G+ F++Y VV +V + P++ + G+ A A+
Sbjct: 106 YDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL----HAFHL-AQGCE 160
Query: 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 130
V + G GT+GL + A A GA V IDI +K AK+FG + N +
Sbjct: 161 NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMS--AP 218
Query: 131 QVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT 189
Q+ L + E G + A+E +VG +++ F +
Sbjct: 219 QMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKI- 276
Query: 190 GRVWKGTAFGGFKSRSQVPWLVDKYMK-------KEIKVDEYVTHNMTLGEINEAFRYM- 241
+ K G PW ++ +++ ++ + H + +A R +
Sbjct: 277 --LRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIA 334
Query: 242 HGGDCLRCVL 251
+ +L
Sbjct: 335 RNAMPGKVLL 344
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-34
Identities = 54/246 (21%), Positives = 90/246 (36%), Gaps = 23/246 (9%)
Query: 19 FMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPG 71
F T ++ + K+ ++ L L G+ A V G
Sbjct: 118 FCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGI----HAC-RRGGVTLG 172
Query: 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD-KPIQ 130
V V G G +G+ AKA GA++V+ D+ + +AK G + + I
Sbjct: 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIA 232
Query: 131 QVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTG 190
+ + + + EC G + ++A + G GT V+VG+ + + P
Sbjct: 233 RKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSEMTTV---PLLHAAI 288
Query: 191 R--VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLR 248
R KG F+ + P + K + V VTH L + EAF G L+
Sbjct: 289 REVDIKGV----FRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLK 344
Query: 249 CVLKMQ 254
+LK
Sbjct: 345 IMLKCD 350
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-33
Identities = 43/250 (17%), Positives = 82/250 (32%), Gaps = 25/250 (10%)
Query: 19 FMGTS---TFSQYTVVHDVSVAKI-------DPQAPLDKVCL---LGCGVPTGLGAVWNT 65
+G + F++Y V + + L +
Sbjct: 152 ELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYN---AVIVRG 208
Query: 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 125
+ PG V + G G +GLA K AGAS+VI + + + AK G ++P
Sbjct: 209 GGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKE 268
Query: 126 DKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCH--KGWGTSVIVGVAASGQEIST 182
+ + ++D T+G G E G ++ +E + + VA + +I
Sbjct: 269 N--FVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPL 326
Query: 183 RPFQLVTGRVWKGTAFGGFKSRSQVPW-LVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
R G + V M + + + ++ +++ EI E + +
Sbjct: 327 TGEVFQVRRA---QIVGSQGHSGHGTFPRVISLMASGMDMTKIISKTVSMEEIPEYIKRL 383
Query: 242 HGGDCLRCVL 251
L V
Sbjct: 384 QTDKSLVKVT 393
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-33
Identities = 60/268 (22%), Positives = 98/268 (36%), Gaps = 37/268 (13%)
Query: 5 RKSRFSINGKPIYH------FMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCL---LG 52
G YH +G F++Y VV + P + + G
Sbjct: 94 HACPACRTGN--YHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFG 151
Query: 53 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 112
V T G V + G G +GL A +A+GA ++ D +P + A+
Sbjct: 152 NAVHTVY-----AGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR 206
Query: 113 NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 172
+ VNP + D + +V+ +T GV+ E GN + + L G G + I+G
Sbjct: 207 PYA-DRLVNPLEED--LLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILG 262
Query: 173 VAASGQEISTRPFQLVTGRVWKG-TAFGGFKSRSQVPW-----LVDKYMKKEIKVDEYVT 226
+ + L V +G TAFG R W LV + + +T
Sbjct: 263 IPSDPIRFD-----LAGELVMRGITAFGIAGRRLWQTWMQGTALVY---SGRVDLSPLLT 314
Query: 227 HNMTLGEINEAFRYMHGGDCLRCVLKMQ 254
H + L EAF + G ++ +L +
Sbjct: 315 HRLPLSRYREAFGLLASGQAVKVILDPK 342
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-33
Identities = 61/247 (24%), Positives = 98/247 (39%), Gaps = 25/247 (10%)
Query: 19 FMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGS 72
G T F++Y VV ++ K P + L LG V T L G
Sbjct: 116 IFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGP------ISGK 169
Query: 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQV 132
V + G G +GL AKA+GA VI + + + AK G +NP + D + +
Sbjct: 170 SVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEED--VVKE 227
Query: 133 LVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 191
++D+TDG GVD E G + L+ G ++G+ I L+
Sbjct: 228 VMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPGKVTID--FNNLI--- 281
Query: 192 VWKG-TAFGGFKSRSQVPW-LVDKYM-KKEIKVDEYVTHNM-TLGEINEAFRYMHGGDCL 247
++K T +G W V + + ++ +D +TH + EAF M G
Sbjct: 282 IFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTG 341
Query: 248 RCVLKMQ 254
+ V ++
Sbjct: 342 KVVFMLK 348
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 4e-33
Identities = 53/235 (22%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDK---VCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGL 79
F+++ SV K+ +K + L T AV + PG+ VA+ G+
Sbjct: 136 GFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV 195
Query: 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG 139
G +G + K + VI +D+ +K A+ G V+ + P++QV+ +LT G
Sbjct: 196 GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR--RDPVKQVM-ELTRG 252
Query: 140 -GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTA 197
GV+ + + +G+ + + + G +IVG G E+ +++ + ++G+
Sbjct: 253 RGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGY---GGELRFPTIRVISSEVSFEGSL 308
Query: 198 FGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251
G + ++ LV ++ +++V L EIN+ + G+ L R VL
Sbjct: 309 VG---NYVELHELVTLALQGKVRV---EVDIHKLDEINDVLERLEKGEVLGRAVL 357
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 8e-31
Identities = 51/261 (19%), Positives = 87/261 (33%), Gaps = 34/261 (13%)
Query: 4 DRKSRFSINGKPIYH------FMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL--- 50
+ G+ Y+ F+ T +Y V KI + +
Sbjct: 108 CNACEPCLTGR--YNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKI-GNMSYENGAMLEP 164
Query: 51 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 110
L + + A V G V + G G +GL AKAAGA ++ DID +
Sbjct: 165 LSVAL----AGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKF 219
Query: 111 AKNFGVTEFVNPKDHDKP--IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGT 167
AK + + + +V+ G + EC G S + AA+ G G
Sbjct: 220 AKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GK 278
Query: 168 SVIVGVAASGQEISTRPFQLVTGR--VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYV 225
++GV + +I PF + R + ++ + P + + + V
Sbjct: 279 VFVIGVGKNEIQI---PFMRASVREVDLQFQ----YRYCNTWPRAIRLVENGLVDLTRLV 331
Query: 226 THNMTLGEINEAFRYMHGGDC 246
TH L + +AF
Sbjct: 332 THRFPLEDALKAFETASDPKT 352
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 5e-30
Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 13/231 (5%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG-LGTV 82
+++Y +V + + L C T AV A ++P + V G G +
Sbjct: 125 AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGL 183
Query: 83 GLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GV 141
G + AKA + +IG+D+ + + AK G +N D P+ ++ +T+ GV
Sbjct: 184 GTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQD-PLAEIR-RITESKGV 241
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 201
D + + + + K G V+VG+ + P ++ + G+ G
Sbjct: 242 DAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGADLHYHA-PLITLSEIQFVGSLVG-- 297
Query: 202 KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251
++S ++ + + KV +T M L E NEA + + R VL
Sbjct: 298 -NQSDFLGIMR--LAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVL 345
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-29
Identities = 49/235 (20%), Positives = 85/235 (36%), Gaps = 20/235 (8%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV---WNTAKVEPGSIVAVFGLG 80
FS+Y +V + L T +GA+ +V V G+G
Sbjct: 121 GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIG 180
Query: 81 TVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG 139
+ + + KA + ++GI K D A G KD + I LTDG
Sbjct: 181 GLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLIN----KLTDG 236
Query: 140 -GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTA 197
G + + +G + + G ++VG+ G+ +S F + G+
Sbjct: 237 LGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGME--GKRVSLEAFDTAVWNKKLLGSN 293
Query: 198 FGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251
+G S + + +V +IK + L +IN+AF + G R V+
Sbjct: 294 YG---SLNDLEDVVRLSESGKIKP---YIIKVPLDDINKAFTNLDEGRVDGRQVI 342
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 6e-28
Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 26/235 (11%)
Query: 19 FMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPG 71
F T ++Y V K+ L++ L L GV A A V+ G
Sbjct: 115 FCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV----HAC-RRAGVQLG 169
Query: 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG--VTEFVNPKDHD-KP 128
+ V V G G +GL AKA GA V+ P++ + AKN G VT V+P +
Sbjct: 170 TTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESS 228
Query: 129 IQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV 188
I + + + + +C GN + + G GT ++VG+ G ++ T P
Sbjct: 229 IIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGM---GSQMVTVPLVNA 284
Query: 189 TGR--VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
R K F+ + P ++ V + VTH+ L + +AF
Sbjct: 285 CAREIDIKSV----FRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAA 335
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 43/250 (17%), Positives = 86/250 (34%), Gaps = 34/250 (13%)
Query: 33 DVSVAKI----DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAE 88
D + K + + L+ +PTG + A V+PGS V + G G VG A
Sbjct: 145 DYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGCVS-AGVKPGSHVYIAGAGPVGRCAAA 203
Query: 89 GAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFEC 147
GA+ GA+ VI D +P++ + G ++ ++ Q+ + VD +
Sbjct: 204 GARLLGAACVIVGDQNPERLKLLSDAGFET-IDLRNSAPLRDQID-QILGKPEVDCGVDA 261
Query: 148 IG--------------NVSVMRAALECCHKGWGTSVIVGV------AASGQEISTRPFQL 187
+G + + + G G I G+ ++ + L
Sbjct: 262 VGFEAHGLGDEANTETPNGALNSLFDVVRAG-GAIGIPGIYVGSDPDPVNKDAGSGRLHL 320
Query: 188 VTGRVW-KGTAFGGFKS--RSQVPWLVDKYMKKEIK--VDEYVTHNMTLGEINEAFRYMH 242
G++W K + + L + + ++ +TL + + +
Sbjct: 321 DFGKMWTKSIRIMTGMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFD 380
Query: 243 GGDCLRCVLK 252
G + V+
Sbjct: 381 KGSPAKFVID 390
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 2e-24
Identities = 52/250 (20%), Positives = 87/250 (34%), Gaps = 34/250 (13%)
Query: 33 DVSVAKI----DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAE 88
D ++ K+ + + L +PTG A V PGS V V G G VGLA A
Sbjct: 145 DFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAA 203
Query: 89 GAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFEC 147
A+ GA+ VI D++P + AK G + +Q+ L VD + +
Sbjct: 204 SARLLGAAVVIVGDLNPARLAHAKAQGFEI-ADLSLDTPLHEQIA-ALLGEPEVDCAVDA 261
Query: 148 IG---------------NVSVMRAALECCHKGWGTSVIVGV------AASGQEISTRPFQ 186
+G +V+ + ++ G I G+ A
Sbjct: 262 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLS 320
Query: 187 LVTGRVW-KGTAFGGFKS--RSQVPWLVDKYMKKEIKVDEYV-THNMTLGEINEAFRYMH 242
+ G W K +F ++ L+ M I + E V ++L + +
Sbjct: 321 IRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFD 380
Query: 243 GGDCLRCVLK 252
G + V+
Sbjct: 381 AGVPKKFVID 390
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 1e-22
Identities = 25/242 (10%), Positives = 64/242 (26%), Gaps = 21/242 (8%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCL--LGCGVPT---------GLGAVWNTAKVEPGS 72
++ + KI + L + +
Sbjct: 123 FMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCR 182
Query: 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQV 132
V V G G +G+ + G + +P + ++ N + ++
Sbjct: 183 KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK--TNYYNSSNGYDKL 240
Query: 133 LVDLTDGGVDYSFECIG-NVSVMRAALECCHKGWGTSVIVGVAASGQ-EISTRPFQLVTG 190
+ G D + G +V+++ + + G + G + SG + + Q +
Sbjct: 241 KDSV--GKFDVIIDATGADVNILGNVIPLLGRN-GVLGLFGFSTSGSVPLDYKTLQEIVH 297
Query: 191 R--VWKGT-AFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL 247
G + V L +T +++ + E + + +
Sbjct: 298 TNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHG 357
Query: 248 RC 249
Sbjct: 358 EI 359
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 4e-21
Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 24/229 (10%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGV-PTGLGAVWNTAKVEPGSIVAVFGL 79
S++ + + +I P++ + L + +A S V G
Sbjct: 123 YMSEFFTSPEKYLVRI-PRSQAELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGN 181
Query: 80 GTVGLAVAEGAKA--AGASRVIGI---DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134
G++GL K G + + D D + T + + + + V
Sbjct: 182 GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVY- 240
Query: 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ---EISTRPFQLVTGR 191
+D+ +E G +++ G ++GV + + ++V
Sbjct: 241 ----EQMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSDWAFEVDAGAFHREMVLHN 295
Query: 192 VWKGTAFGGFKSRSQVPWLVDKYM--KKEIKVDEYVTHNMTLGEINEAF 238
G S + + +++ VT L E AF
Sbjct: 296 K---ALVGSVNSHVEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAF 341
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-20
Identities = 61/248 (24%), Positives = 95/248 (38%), Gaps = 44/248 (17%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVWN---TAKVEPGSIVAVFGL 79
+++Y V KI ++ + C GV + +PG VA++G+
Sbjct: 119 GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGV-----TTYKALKVTGAKPGEWVAIYGI 173
Query: 80 GTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD 138
G +G +AV + AKA G V+ +DI +K + AK G VNP D +
Sbjct: 174 GGLGHVAV-QYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKF---MKEKV 228
Query: 139 GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV-WKGTA 197
GGV + + ++A +G G V+VG+ I F V + G+
Sbjct: 229 GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPEEMPIP--IFDTVLNGIKIIGSI 285
Query: 198 FGG---------FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL- 247
G F + +V K I+V L +INE F M G
Sbjct: 286 VGTRKDLQEALQFAAEGKV--------KTIIEV-------QPLEKINEVFDRMLKGQING 330
Query: 248 RCVLKMQD 255
R VL ++D
Sbjct: 331 RVVLTLED 338
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-20
Identities = 63/247 (25%), Positives = 94/247 (38%), Gaps = 42/247 (17%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPT--GLGAVWNTAKVEPGSIVAVFGLG 80
+F QY V A I L +V + C G+ L +A + G VA+ G
Sbjct: 124 SFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKAL----KSANLMAGHWVAISGAA 179
Query: 81 TVGL---AVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 137
GL AV + AKA G RV+GID K + ++ G F++ + VL T
Sbjct: 180 G-GLGSLAV-QYAKAMGY-RVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVL-KAT 235
Query: 138 DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV-WKGT 196
DGG + + + A+ GT+V+VG+ A G + + F V + G+
Sbjct: 236 DGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPA-GAKCCSDVFNQVVKSISIVGS 293
Query: 197 AFGG---------FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL 247
G F +R V K IKV L + E + M G +
Sbjct: 294 YVGNRADTREALDFFARGLV--------KSPIKVVG-------LSTLPEIYEKMEKGQIV 338
Query: 248 -RCVLKM 253
R V+
Sbjct: 339 GRYVVDT 345
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 1e-19
Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 44/246 (17%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVWN---TAKVEPGSIVAVFGL 79
+ +Y V V + + ++ + C GV V+ PG V + G+
Sbjct: 121 GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGV-----TVYKGLKVTDTRPGQWVVISGI 175
Query: 80 GTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD 138
G +G +AV + A+A G RV +DID K + A+ G VN +D D P + ++
Sbjct: 176 GGLGHVAV-QYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARDTD-PAAWLQKEI-- 230
Query: 139 GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV-WKGTA 197
GG + A+ +G GT + G+ F +V + +G+
Sbjct: 231 GGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPGDFGTP--IFDVVLKGITIRGSI 287
Query: 198 FGG---------FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL- 247
G F + V K + + L ++N+ F + G
Sbjct: 288 VGTRSDLQESLDFAAHGDV--------KATVSTAK-------LDDVNDVFGRLREGKVEG 332
Query: 248 RCVLKM 253
R VL
Sbjct: 333 RVVLDF 338
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-12
Identities = 53/225 (23%), Positives = 83/225 (36%), Gaps = 17/225 (7%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVG 83
S+Y V+ + + L C T A+ + G V V G G V
Sbjct: 143 VLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVA 202
Query: 84 LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVD 142
L + AKA GA VI +K DRA G +N + D + + LT G D
Sbjct: 203 LFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLEED--WVERVYALTGDRGAD 259
Query: 143 YSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV-WKGTAFGGF 201
+ E G + + +L+ G ++GV G E+S L+ +G + G
Sbjct: 260 HILEIAGG-AGLGQSLKAVAPD-GRISVIGV-LEGFEVSGPVGPLLLKSPVVQGISVG-- 314
Query: 202 KSRSQVPWLVDKYMKKEIK--VDEYVTHNMTLGEINEAFRYMHGG 244
R + LV + +K +D E+ EA ++ G
Sbjct: 315 -HRRALEDLVGAVDRLGLKPVIDMR----YKFTEVPEALAHLDRG 354
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 2e-12
Identities = 39/243 (16%), Positives = 76/243 (31%), Gaps = 33/243 (13%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV--WNTAKVEPGSIVAVFGL-G 80
++ +V + ++ G T + N A ++ G V ++G G
Sbjct: 180 GLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASG 239
Query: 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV------ 134
+G + A A GA I + P+K + + G ++ +
Sbjct: 240 GLGSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKE 298
Query: 135 ---------DLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ-EISTR 183
+LT G +D FE G A++ KG GT + E R
Sbjct: 299 WKRFGKRIRELTGGEDIDIVFEHPGR-ETFGASVFVTRKG-GTITTCASTSGYMHEYDNR 356
Query: 184 PFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK--VDEYVTHNMTLGEINEAFRYM 241
++ + G+ F + + K I + + + L + +A +
Sbjct: 357 YL-WMSLKRIIGSHFA---NYREAWEANRLIAKGRIHPTLSKVYS----LEDTGQAAYDV 408
Query: 242 HGG 244
H
Sbjct: 409 HRN 411
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 3e-12
Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 29/242 (11%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV--WNTAKVEPGSIVAVFGL-G 80
++Y VV + ++ + T + A+++ G IV ++G G
Sbjct: 172 GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASG 231
Query: 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD-------------- 126
+G + K G + + +K + G +N +
Sbjct: 232 GLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVE 290
Query: 127 --KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ-EISTR 183
+ + +++V+ D FE G ++ +G GT V G ++ R
Sbjct: 291 TGRKLAKLVVEKAGREPDIVFEHTGR-VTFGLSVIVARRG-GTVVTCGSSSGYLHTFDNR 348
Query: 184 PFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG 243
+ + G+ + + + + ++ L E EA R +
Sbjct: 349 YL-WMKLKKIVGSHGA---NHEEQQATNRLFESGAVVP--AMSAVYPLAEAAEACRVVQT 402
Query: 244 GD 245
Sbjct: 403 SR 404
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 4e-12
Identities = 45/247 (18%), Positives = 79/247 (31%), Gaps = 30/247 (12%)
Query: 16 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVA 75
I G T+ V + ++ ++ PL LG T + + +++PG V
Sbjct: 113 IPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVI 172
Query: 76 VFGL-GTVGLAVAEGAKAAGASRVIGI----DIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 130
VG AV + A A G R I + K DR K+ G + ++ +P
Sbjct: 173 QNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRP-- 229
Query: 131 QVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT 189
++ D + C+G L +G GT V G + Q + L+
Sbjct: 230 EMKNFFKDMPQPRLALNCVGG-KSSTELLRQLARG-GTMVTYG-GMAKQPVVASVSLLIF 286
Query: 190 GRVWKGTAFGGF------------KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEA 237
K GF + + + L D + ++ + L + A
Sbjct: 287 ----KDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTA--PACSQVPLQDYQSA 340
Query: 238 FRYMHGG 244
Sbjct: 341 LEASMKP 347
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 3e-10
Identities = 47/249 (18%), Positives = 80/249 (32%), Gaps = 33/249 (13%)
Query: 19 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP--TGLGAVWNTAKVEPGSIVAV 76
+M +F++YTVV + P L V T ++ + G V V
Sbjct: 114 YMAPGSFAEYTVVPASIATPVPSVKPE----YLTLLVSGTTAYISLKELGGLSEGKKVLV 169
Query: 77 FG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135
G G + +K A VIG +K K+ G +N K + VL
Sbjct: 170 TAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKTEP--VGTVLKQ 226
Query: 136 LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR---- 191
GVD +E +G ++ A++ G +++G + + V
Sbjct: 227 EYPEGVDVVYESVGG-AMFDLAVDALATK-GRLIVIGFIS--GYQTPTGLSPVKAGTLPA 282
Query: 192 --VWKGTAFGGFKSRSQV-----------PWLVDKYMKKEIKVDEYVTHNMTLG--EINE 236
+ K + GF + V + E+ + + G I
Sbjct: 283 KLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFR 342
Query: 237 AFRYMHGGD 245
A YM+ G
Sbjct: 343 AVNYMYMGK 351
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-09
Identities = 51/227 (22%), Positives = 87/227 (38%), Gaps = 18/227 (7%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG-LGTV 82
T+++Y V+ + ++A ++ + T V + V PG V V V
Sbjct: 120 TYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGV 179
Query: 83 GLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GV 141
+A + AK GA RVI K RAK G E VN D + + LT G G
Sbjct: 180 SVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYTHPD--WPKEVRRLTGGKGA 236
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV-WKGTAFGG 200
D + G + ++ G G I G A+SG E + + ++ G+
Sbjct: 237 DKVVDHTGALYFEGV-IKATANG-GRIAIAG-ASSGYEGTLPFAHVFYRQLSILGSTMA- 292
Query: 201 FKSRSQVPWLVDKYMKKEIK--VDEYVTHNMTLGEINEAFRYMHGGD 245
S+S++ ++ + ++K V + + L E R +
Sbjct: 293 --SKSRLFPILRFVEEGKLKPVVGQV----LPLEAAAEGHRLLEERR 333
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-09
Identities = 45/237 (18%), Positives = 82/237 (34%), Gaps = 21/237 (8%)
Query: 19 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 78
F +++ V ++ PQ + L T A ++ G V V G
Sbjct: 108 FNFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLG 167
Query: 79 -LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 137
G +G A + AK GA +VI + + K+ G + ++ + + + T
Sbjct: 168 AAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLP---LEEGWAKAVREAT 223
Query: 138 DG-GVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEISTRPFQL-------V 188
G GVD + IG A+ G ++VG A+G I T +
Sbjct: 224 GGAGVDMVVDPIGG-PAFDDAVRTL--ASEGRLLVVG-FAAG-GIPTIKVNRLLLRNASL 278
Query: 189 TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 245
G W + ++K + + ++ V+ + L E +A + G
Sbjct: 279 IGVAWGEFLRTHADYLYETQAGLEKLVAEGMRP--PVSARIPLSEGRQALQDFADGK 333
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 4e-09
Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 16/235 (6%)
Query: 19 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 78
G T+ +Y V I + T T ++ ++ V
Sbjct: 93 LRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNA 152
Query: 79 -LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 137
+G A+ ++ R+I + + K + G ++ + + +++LT
Sbjct: 153 CGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTSTAP--LYETVMELT 209
Query: 138 DG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL---VTGRVW 193
+G G D + + IG G + +G SG +++ V ++
Sbjct: 210 NGIGADAAIDSIGGPDGNE-LAFSLRPN-GHFLTIG-LLSGIQVNWAEIVTKAKVHANIF 266
Query: 194 KGTAFGGFKSRSQVPWLVDK----YMKKEIKVDEYVTHNMTLGEINEAFRYMHGG 244
+ S + ++++ + V L ++ A +
Sbjct: 267 HLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTYELADVKAAVDVVQSA 320
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 43/248 (17%), Positives = 76/248 (30%), Gaps = 31/248 (12%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT----------GLGAVWNTAKVEPGSI 73
FSQYTV AKI ++ L G+ T L +
Sbjct: 106 AFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKP 165
Query: 74 VAVF---GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 130
V V G + + +G I P FD AK+ G E + + + +
Sbjct: 166 VYVLVYGGSTATATVTMQMLRLSGY-IPIAT-CSPHNFDLAKSRGAEEVFDYRAPN--LA 221
Query: 131 QVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV---GVAASGQEISTRPFQL 187
Q + T + Y+ +CI NV + G V + A+ +++ T + L
Sbjct: 222 QTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTL 281
Query: 188 VTGRVWKGTAFGGFKSRSQVPWLVD------KYMKKEIKVDEYVTHNMT-----LGEINE 236
+G+ + R + + ++ V H + I +
Sbjct: 282 GPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQ 341
Query: 237 AFRYMHGG 244
+ G
Sbjct: 342 GMELVRKG 349
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-08
Identities = 24/187 (12%), Positives = 55/187 (29%), Gaps = 25/187 (13%)
Query: 16 IYHFMGTSTFSQYTVVHDVSVAKIDPQA-----------PLDKVCLLGCGVPTGLGAVWN 64
I + T+ + + +D K+ A +++ + T + +
Sbjct: 101 IPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTH 160
Query: 65 TAKVEPGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGI----DIDPKKFDRAKNFGVTE 118
K+ PG + G VG ++ K I + + K G T+
Sbjct: 161 YVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ 219
Query: 119 FVNPKDHD-KPIQQVLVDLTD---GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174
+ ++ + + + G + C+G + G + G
Sbjct: 220 VITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGG-KSSTGIARKLNNN-GLMLTYG-G 276
Query: 175 ASGQEIS 181
S Q ++
Sbjct: 277 MSFQPVT 283
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-07
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 25 FSQYTVVHDVSVAKI-DPQAPLDKVCLLGCGVPTGLGAVWN---TAKVEPGSIVAVFGLG 80
+SQ VVH+ V +I PQ L V L C T ++ + PG V V G+G
Sbjct: 149 YSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGIT----TYSPLRHWQAGPGKKVGVVGIG 204
Query: 81 TVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 126
+G + + + A A GA V+ K + AK G E VN ++ D
Sbjct: 205 GLGHMGI-KLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRNAD 249
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-07
Identities = 21/170 (12%), Positives = 44/170 (25%), Gaps = 15/170 (8%)
Query: 24 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN---TAKVEPGSIVAVFG-L 79
++++Y V + + + G + K E +
Sbjct: 119 SWAEYAVAEAAACIPLLDTVRDED----GAAMIVNPLTAIAMFDIVKQEGEKAFVMTAGA 174
Query: 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG 139
+ + AK G R I ++ K+ G +N K D + L ++
Sbjct: 175 SQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEKAPD--FEATLREVMKA 231
Query: 140 -GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV 188
+ + + A K +I G R +
Sbjct: 232 EQPRIFLDAVTG-PLASAIFNAMPKR-ARWIIYG-RLDPDATVIREPGQL 278
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 8e-07
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 5 RKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
K F+ + +H +S VV + V +D APL+KV L C T
Sbjct: 110 TKVVFTYDCLDSFH-DNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGIT---- 164
Query: 62 VWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 117
++ +KV G+ V V G G +G +AV + A A GA V + K A + GV
Sbjct: 165 TYSPLKFSKVTKGTKVGVAGFGGLGSMAV-KYAVAMGA-EVSVFARNEHKKQDALSMGVK 222
Query: 118 EFVNPKD 124
F
Sbjct: 223 HFYTDPK 229
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-06
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV-TEFVNPKDHDKPIQQV 132
+ V G G +G +A K + V D D GV T+ V+ KD + +
Sbjct: 8 ICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKAL 67
Query: 133 L-VDLTDGGVDYSFECIGNVSVMRAALEC-CH 162
D + + +AA H
Sbjct: 68 GGFDAVISAAPFFL----TPIIAKAAKAAGAH 95
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-05
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN---TAKVEPGSIVAVFGLGT 81
++ Y VH+ V I P L CG T V++ PG V + GLG
Sbjct: 135 YANYVRVHEHFVVPIPENIPSHLAAPLLCGGLT----VYSPLVRNGCGPGKKVGIVGLGG 190
Query: 82 VG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 124
+G + +KA GA I +K + A G ++ +
Sbjct: 191 IGSMGT-LISKAMGA-ETYVISRSSRKREDAMKMGADHYIATLE 232
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 1e-05
Identities = 38/237 (16%), Positives = 67/237 (28%), Gaps = 40/237 (16%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN---TAKVEPGSIVAVFG-LG 80
++ V ++ + ++ P + A+ PG V V G
Sbjct: 81 LAERVAVPKGALLPLPEGLSPEE----AAAFPVSFLTAYLALKRAQARPGEKVLVQAAAG 136
Query: 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG- 139
+G A + A+A G RV+ P+K G E + +
Sbjct: 137 ALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAEVPE-------RAKAWG 188
Query: 140 GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV----------T 189
G+D E G + +L G G V +G A E++ P +
Sbjct: 189 GLDLVLEVRG--KEVEESLGLLAHG-GRLVYIGAA--EGEVAPIPPLRLMRRNLAVLGFW 243
Query: 190 GRVWKGTAFGGFKSRSQV-PWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 245
++ + P L ++ V E AFR +
Sbjct: 244 LTPLLREGALVEEALGFLLPRL-------GRELRPVVGPVFPFAEAEAAFRALLDRG 293
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 16/162 (9%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW----NTAKVEPGSIVAVFG-L 79
+++Y + D +V K+ + + G + + ++A V+ G V V G
Sbjct: 125 YAEYALAADHTVYKLPEKLDFKQ----GAAIGIPYFTAYRALIHSACVKAGESVLVHGAS 180
Query: 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG 139
G VGLA + A+A G +++G + G E N ++ + +
Sbjct: 181 GGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHREVN--YIDKIKKYVGE 237
Query: 140 -GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
G+D E + NV++ + L G G ++VG + EI
Sbjct: 238 KGIDIIIEMLANVNLSK-DLSLLSHG-GRVIVVG-SRGTIEI 276
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPT-------GLGAVWNTAKVEPGSIVAV 76
+S + V ++ + + PLD L C G+ GL EPG + +
Sbjct: 142 YSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLD--------EPGKHIGI 193
Query: 77 FGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHD 126
GLG +G +AV + AKA G+ +V I P K + A KNFG F+ +D +
Sbjct: 194 VGLGGLGHVAV-KFAKAFGS-KVTVISTSPSKKEEALKNFGADSFLVSRDQE 243
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV------WNTAKVEPGSIVAVFG 78
F++ TVVH V KI +++ L C T V + + PG + G
Sbjct: 135 FAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVT----VYSPLSHFGLKQ--PGLRGGILG 188
Query: 79 LGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHD 126
LG VG + V + AKA G V I KK + A ++ G ++V D
Sbjct: 189 LGGVGHMGV-KIAKAMGH-HVTVISSSNKKREEALQDLGADDYVIGSDQA 236
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Length = 144 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-05
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 115
AV GLG G ++ + G V+ +DI+ +K + ++
Sbjct: 9 FAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYASYA 49
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-05
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 115
V G G+ + AAG +V+ +D +K + ++ G
Sbjct: 9 YIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEG 49
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-05
Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 15/142 (10%)
Query: 27 QYTVVHDVSVAKIDPQ-APLDKVCLLGC-GVP--TGLGAVWNTAKVEPGSIVAVF---GL 79
++ S+ K+DPQ LG G+P T L + + GS +
Sbjct: 111 TKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAA 170
Query: 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTD 138
G G + G SRV+GI +K + G +N K + + + L +
Sbjct: 171 GACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDN--VAEQLRESCP 228
Query: 139 GGVDYSFECIGNV--SVMRAAL 158
GVD F+ NV ++ +
Sbjct: 229 AGVDVYFD---NVGGNISDTVI 247
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 9e-05
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 117
A+ +T G+ VAV GLG VG++VA A GA +V + R G+
Sbjct: 145 AIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGME 200
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 2e-04
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 112
+ G G G + L + G RV ++I+P + ++
Sbjct: 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSR 163
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 119
A+ +T GS VAV GLG G+ +A A GA V R G+ F
Sbjct: 147 AIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLVPF 204
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Length = 183 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 4e-04
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 116
V + G+G +G + +A +GI+I + + ++ G
Sbjct: 42 VLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGR 84
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 4e-04
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 117
G V V GLG VG ++A A AGA +++ D D ++ A G T
Sbjct: 175 GLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT 220
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 8e-04
Identities = 44/250 (17%), Positives = 76/250 (30%), Gaps = 42/250 (16%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN----TAKVEPGSIVAVFG-L 79
+++ V KI + P + A + G V V
Sbjct: 97 WAEVVCTPVEFVYKIPDDMSFSE----AAAFPMNFVTAYVMLFEVANLREGMSVLVHSAG 152
Query: 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG 139
G VG AVA+ V G K + K+ + ++ D Q + ++
Sbjct: 153 GGVGQAVAQLCSTVPNVTVFGTASTFKH-EAIKDSV--THLFDRNAD--YVQEVKRISAE 207
Query: 140 GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL------------ 187
GVD +C+ + + L GT ++ G + + F
Sbjct: 208 GVDIVLDCLCGDNTGK-GLSLLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNP 265
Query: 188 ---------VTGRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEIN 235
+ G F ++ R V L+ Y +K+IK V L E+
Sbjct: 266 IKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKP--VVDSLWALEEVK 323
Query: 236 EAFRYMHGGD 245
EA + +H
Sbjct: 324 EAMQRIHDRG 333
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 255 | |||
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 100.0 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 100.0 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 100.0 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 100.0 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 100.0 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 100.0 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 100.0 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 100.0 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 100.0 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 100.0 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 100.0 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 100.0 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 100.0 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 100.0 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 100.0 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 100.0 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 100.0 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 100.0 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 100.0 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 100.0 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 100.0 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 100.0 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 100.0 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 100.0 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 100.0 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 100.0 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 100.0 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 100.0 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 100.0 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 100.0 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 100.0 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 100.0 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 100.0 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 100.0 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 100.0 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 100.0 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 100.0 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 100.0 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 100.0 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 100.0 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 100.0 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 100.0 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 100.0 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 100.0 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 100.0 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 100.0 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 100.0 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 100.0 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 100.0 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 100.0 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 100.0 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 100.0 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 100.0 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 100.0 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 100.0 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 100.0 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 100.0 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 100.0 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 100.0 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 100.0 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 100.0 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 100.0 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 100.0 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 100.0 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 100.0 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 100.0 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 100.0 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 100.0 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.97 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 99.94 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 99.03 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 99.03 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.91 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.86 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.78 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.75 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.73 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.55 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.45 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.42 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.41 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.4 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.39 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.35 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.25 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.15 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.1 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.06 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 98.05 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 98.04 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 98.03 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.0 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.97 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.94 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.94 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.92 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 97.87 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 97.84 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 97.79 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 97.77 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 97.77 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 97.76 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.75 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 97.75 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 97.72 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 97.7 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.7 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.69 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.68 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 97.67 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 97.67 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 97.64 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 97.63 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.63 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 97.59 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 97.59 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 97.57 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.57 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 97.57 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 97.57 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.57 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 97.56 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.56 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 97.55 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 97.55 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 97.55 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 97.54 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 97.52 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 97.52 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 97.51 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.51 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 97.51 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 97.5 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.5 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 97.5 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 97.5 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 97.49 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 97.48 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 97.48 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 97.48 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.48 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 97.48 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 97.47 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 97.47 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 97.47 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 97.47 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.47 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 97.46 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 97.45 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 97.45 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 97.45 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 97.45 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 97.45 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 97.44 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 97.44 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 97.44 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 97.44 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 97.44 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 97.44 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 97.44 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 97.43 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 97.43 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 97.43 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 97.42 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 97.42 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 97.42 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 97.41 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 97.41 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 97.41 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 97.4 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.4 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 97.4 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 97.39 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 97.39 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 97.39 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 97.39 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.39 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 97.39 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 97.38 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 97.38 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 97.38 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 97.38 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.38 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.37 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.37 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 97.37 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 97.37 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 97.37 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 97.37 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 97.37 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 97.37 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.36 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 97.36 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 97.36 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 97.36 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 97.36 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 97.36 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 97.36 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 97.35 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 97.35 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.35 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 97.35 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 97.35 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 97.35 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 97.34 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 97.34 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 97.34 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 97.34 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 97.34 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.33 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 97.33 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 97.33 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 97.33 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 97.33 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 97.33 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.32 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 97.32 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 97.32 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 97.32 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 97.32 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 97.31 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 97.31 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 97.3 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 97.3 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 97.3 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 97.3 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 97.3 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 97.3 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 97.29 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.29 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 97.29 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.29 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 97.29 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 97.28 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.28 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.27 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.27 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 97.27 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.27 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 97.27 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 97.27 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 97.27 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 97.27 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 97.26 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 97.26 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 97.26 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 97.26 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.26 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 97.25 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.25 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 97.24 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.24 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 97.23 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 97.23 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 97.23 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 97.23 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 97.23 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.23 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 97.23 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 97.22 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 97.22 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 97.22 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 97.21 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 97.21 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 97.2 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 97.2 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 97.2 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.2 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.19 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 97.19 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.19 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.19 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 97.19 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.18 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 97.18 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 97.18 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.18 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 97.18 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 97.18 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 97.18 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.18 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 97.17 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 97.17 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 97.17 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 97.17 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 97.16 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 97.16 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 97.16 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 97.16 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 97.16 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.15 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 97.15 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 97.15 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 97.14 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 97.14 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 97.13 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 97.13 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 97.13 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 97.13 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 97.13 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 97.13 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 97.13 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.12 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 97.12 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 97.11 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 97.11 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 97.11 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 97.1 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 97.09 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 97.08 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 97.08 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 97.07 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 97.07 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 97.07 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 97.06 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 97.06 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 97.06 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 97.05 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 97.05 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.05 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 97.04 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 97.04 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.03 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.03 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 97.03 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 97.03 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.03 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 97.02 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.02 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 97.02 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 97.02 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.01 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 97.01 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.0 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 97.0 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 97.0 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 96.99 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 96.99 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.99 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 96.98 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 96.98 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 96.98 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 96.97 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 96.97 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 96.96 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 96.96 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 96.96 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 96.96 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 96.95 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 96.95 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 96.95 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 96.94 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 96.94 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 96.94 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 96.94 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 96.94 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 96.94 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 96.93 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.93 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 96.92 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 96.91 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.91 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 96.91 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.91 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 96.91 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.9 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 96.9 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 96.9 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.89 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 96.89 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.89 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.89 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.88 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 96.88 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 96.88 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 96.87 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.87 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.86 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 96.86 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 96.86 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.86 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 96.85 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 96.85 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 96.84 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 96.84 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 96.84 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.84 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 96.84 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.84 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 96.84 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 96.83 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.83 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 96.83 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 96.83 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.83 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.82 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.82 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 96.82 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.81 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 96.81 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 96.8 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 96.79 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.79 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 96.79 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 96.79 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 96.78 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 96.78 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 96.77 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 96.77 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 96.76 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 96.76 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.75 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 96.75 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 96.75 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.75 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 96.75 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 96.75 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 96.74 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.73 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 96.73 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.73 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.73 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.73 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 96.73 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.72 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 96.72 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 96.71 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.71 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 96.7 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 96.7 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 96.7 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 96.7 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 96.7 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 96.7 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 96.69 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 96.68 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 96.68 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 96.68 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 96.68 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 96.67 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.67 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.67 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.67 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 96.66 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 96.66 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.66 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 96.66 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 96.66 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 96.64 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 96.64 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 96.64 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.63 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 96.63 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 96.62 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.62 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 96.6 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 96.6 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.6 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.6 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.59 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 96.58 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 96.58 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 96.58 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.57 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 96.56 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 96.56 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 96.56 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 96.56 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 96.56 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.55 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.54 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 96.54 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.54 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 96.54 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.52 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 96.51 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.51 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.5 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.49 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 96.48 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.48 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 96.47 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 96.47 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 96.46 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 96.46 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 96.44 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 96.44 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 96.43 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 96.43 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 96.42 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 96.41 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 96.41 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.41 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 96.4 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 96.39 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.39 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 96.38 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 96.38 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 96.37 |
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-43 Score=293.82 Aligned_cols=233 Identities=88% Similarity=1.428 Sum_probs=209.5
Q ss_pred cceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc
Q 025257 23 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102 (255)
Q Consensus 23 g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~ 102 (255)
|+|+||+++|++.++++|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++
T Consensus 146 G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~ 225 (378)
T 3uko_A 146 STFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGID 225 (378)
T ss_dssp CCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEEC
T ss_pred cceEeEEEechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 69999999999999999999999999999999999999988999999999999999999999999999999997899999
Q ss_pred CCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCcccc
Q 025257 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 182 (255)
Q Consensus 103 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~ 182 (255)
++++++++++++|+++++|+.+.+.++.+.+++.+++++|+||||+|.+..++.+++++++++|+++.+|........++
T Consensus 226 ~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~ 305 (378)
T 3uko_A 226 IDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 305 (378)
T ss_dssp SCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEE
T ss_pred CCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCcccc
Confidence 99999999999999999998732278999999998889999999999987799999999992299999998654455666
Q ss_pred CchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEecCC
Q 025257 183 RPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQD 255 (255)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~~ 255 (255)
+...++++.++.|+.++.+...++++++++++.+|++++.++++++|||+++++||+.+.+++..|+||++++
T Consensus 306 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~Kvvi~~~~ 378 (378)
T 3uko_A 306 RPFQLVTGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVLDTSK 378 (378)
T ss_dssp CTHHHHTTCEEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCSEEEEETTC
T ss_pred CHHHHhcCcEEEEEEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCceEEEEecCC
Confidence 6666666899999887665555789999999999999988899999999999999999988887799999875
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=285.04 Aligned_cols=229 Identities=28% Similarity=0.487 Sum_probs=202.0
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||+++|+++++++|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus 142 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~ 221 (371)
T 1f8f_A 142 QSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAV 221 (371)
T ss_dssp TCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred CccccCeEEechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 48999999999999999999999999999999999999998888999999999999999999999999999999569999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~ 181 (255)
+++++++++++++|+++++++++ +++.+.+++.+++++|+|||++|.+..++.++++++++ |+++.+|........+
T Consensus 222 ~~~~~~~~~a~~lGa~~vi~~~~--~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~ 298 (371)
T 1f8f_A 222 DIVESRLELAKQLGATHVINSKT--QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQ 298 (371)
T ss_dssp ESCHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCC
T ss_pred CCCHHHHHHHHHcCCCEEecCCc--cCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEeCCCCCCCccc
Confidence 99999999999999999999987 88889999888768999999999876699999999997 9999999864333445
Q ss_pred cCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEecC
Q 025257 182 TRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 254 (255)
Q Consensus 182 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~ 254 (255)
++...++. ++++.|+..+.+...++++++++++++|++++.+.+++ |||+++++|++.+.+++..|+||+++
T Consensus 299 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~~Kvvv~~~ 371 (371)
T 1f8f_A 299 FDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKPIIKIA 371 (371)
T ss_dssp CCHHHHHHTTCEEEECSGGGSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSCSEEEEECC
T ss_pred cCHHHHHhCCCEEEEeCCCCCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCceEEEEeeC
Confidence 66555544 99999987654333467899999999999988778887 99999999999998777679999874
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-41 Score=280.55 Aligned_cols=228 Identities=50% Similarity=0.849 Sum_probs=198.9
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||+++|+++++++|++++++ ||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus 144 ~G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~ 222 (373)
T 1p0f_A 144 TSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGV 222 (373)
T ss_dssp TCCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred CccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 4899999999999999999999999 999999999999998888999999999999999999999999999998679999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCC-ceEEEEccCCCCCcc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEI 180 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~ 180 (255)
+++++++++++++|+++++|+++.++++.+.+++.+++++|+||||+|.+..++.+++++++ + |+++.+|........
T Consensus 223 ~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~ 301 (373)
T 1p0f_A 223 GTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC-GSGVTVVLGLASPNERL 301 (373)
T ss_dssp CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECCCCCTTCCE
T ss_pred CCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhc-CCCEEEEEccCCCCCcc
Confidence 99999999999999999998863124688889888877999999999987669999999999 7 999999986433345
Q ss_pred ccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 181 STRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 181 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
+++...+.. + ++.|+..+.+.. ++++++++++++|++++.+++.++||++++++|++.+.+++..|+||++
T Consensus 302 ~~~~~~~~~~~-~i~g~~~~~~~~-~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 373 (373)
T 1p0f_A 302 PLDPLLLLTGR-SLKGSVFGGFKG-EEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIMIY 373 (373)
T ss_dssp EECTHHHHTTC-EEEECSGGGCCG-GGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSCSEEEEEC
T ss_pred ccCHHHhccCc-eEEeeccCCcCH-HHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCcceEEEeC
Confidence 566555555 6 898886544322 6799999999999998878888999999999999999887767999875
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=281.11 Aligned_cols=230 Identities=53% Similarity=0.931 Sum_probs=200.3
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||+++|+++++++|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus 143 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~ 222 (374)
T 2jhf_A 143 TSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGV 222 (374)
T ss_dssp TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 48999999999999999999999999999999999999998888999999999999999999999999999998679999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCC-ceEEEEccCCCCCcc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEI 180 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~ 180 (255)
+++++++++++++|+++++|+.+.++++.+.+++.+++++|+|||++|.+..++.+++++++ + |+++.+|........
T Consensus 223 ~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~ 301 (374)
T 2jhf_A 223 DINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE-AYGVSVIVGVPPDSQNL 301 (374)
T ss_dssp CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCT-TTCEEEECSCCCTTCCE
T ss_pred cCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhc-CCcEEEEeccCCCCCcc
Confidence 99999999999999999998763124688888888776899999999987669999999999 7 999999986543344
Q ss_pred ccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 181 STRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 181 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
+++...++. + ++.|+..+.+...++++++++++++|++++.++++++|||+++++|++.+.+++..|+||++
T Consensus 302 ~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~ 374 (374)
T 2jhf_A 302 SMNPMLLLSGR-TWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF 374 (374)
T ss_dssp EECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred ccCHHHHhcCC-eEEEeccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCcceEEEeC
Confidence 566555554 6 89888765443346789999999999998878888999999999999999887767999875
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=281.36 Aligned_cols=230 Identities=71% Similarity=1.147 Sum_probs=200.3
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||+++|+++++++|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus 142 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~ 221 (373)
T 2fzw_A 142 TSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGV 221 (373)
T ss_dssp TCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred CccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 48999999999999999999999999999999999999998888999999999999999999999999999998679999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCC-ceEEEEccCCCCCcc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEI 180 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~ 180 (255)
+++++++++++++|+++++|+++.+.++.+.+++.+++++|+|||++|.+..++.+++++++ + |+++.+|........
T Consensus 222 ~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~ 300 (373)
T 2fzw_A 222 DINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHK-GWGVSVVVGVAASGEEI 300 (373)
T ss_dssp CSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCCTTCCE
T ss_pred cCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhcc-CCcEEEEEecCCCCcee
Confidence 99999999999999999998763124688888888877899999999987669999999999 7 999999986433344
Q ss_pred ccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 181 STRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 181 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
+++...++. + ++.|+..+.+...++++++++++++|++++.+++.++|||+++++|++.+.+++..|+||++
T Consensus 301 ~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 373 (373)
T 2fzw_A 301 ATRPFQLVTGR-TWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 373 (373)
T ss_dssp EECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred eeCHHHHhcCC-EEEEeccCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCcceEEEeC
Confidence 566555555 6 89888655443346789999999999998878888999999999999999877767999875
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-41 Score=281.28 Aligned_cols=228 Identities=45% Similarity=0.810 Sum_probs=199.2
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||+++|+++++++|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus 147 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~ 226 (376)
T 1e3i_A 147 VSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAI 226 (376)
T ss_dssp TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceeEEEeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 38999999999999999999999999999999999999998888999999999999999999999999999998679999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCC-ceEEEEccCCCCCcc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEI 180 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~ 180 (255)
+++++++++++++|+++++|+++.++++.+.+++.+++++|+||||+|.+..++.+++++++ + |+++.+|.. ....
T Consensus 227 ~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~-~~G~iv~~G~~--~~~~ 303 (376)
T 1e3i_A 227 DINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL-GWGSCTVVGAK--VDEM 303 (376)
T ss_dssp CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCT-TTCEEEECCCS--SSEE
T ss_pred cCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhc-CCCEEEEECCC--CCcc
Confidence 99999999999999999998763125688888888877999999999987669999999999 7 999999983 2344
Q ss_pred ccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 181 STRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 181 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
+++...++. + ++.|+..+.+...++++++++++++|++++.++++++|||+++++|++.+.+++..|+||++
T Consensus 304 ~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~ 376 (376)
T 1e3i_A 304 TIPTVDVILGR-SINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTILTF 376 (376)
T ss_dssp EEEHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred ccCHHHhhccC-eEEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCcceEEEeC
Confidence 555555555 6 89888655443346789999999999998878888999999999999999888767999875
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=279.92 Aligned_cols=229 Identities=59% Similarity=1.046 Sum_probs=199.7
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.|+|+||+++|+++++++|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++
T Consensus 144 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~ 223 (374)
T 1cdo_A 144 TSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAV 223 (374)
T ss_dssp TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 38999999999999999999999999999999999999998888999999999999999999999999999998679999
Q ss_pred cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCC-ceEEEEccCCCCCcc
Q 025257 102 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEI 180 (255)
Q Consensus 102 ~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~ 180 (255)
+++++++++++++|+++++|+.+.++++.+.+++.+++++|++||++|.+..++.+++++++ + |+++.+|.... ...
T Consensus 224 ~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~-~~~ 301 (374)
T 1cdo_A 224 DLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLK-GWGVSVLVGWTDL-HDV 301 (374)
T ss_dssp CSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCSS-SCE
T ss_pred cCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhc-CCcEEEEEcCCCC-CCc
Confidence 99999999999999999998763124688888888777899999999987669999999999 7 99999998643 344
Q ss_pred ccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 181 STRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 181 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
+++...+.. + ++.|+..+.+...++++++++++++|++++.+++.++|||+++++|++.+.+++..|+||++
T Consensus 302 ~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 374 (374)
T 1cdo_A 302 ATRPIQLIAGR-TWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 374 (374)
T ss_dssp EECHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred ccCHHHHhcCC-eEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCeeEEEEeC
Confidence 555555555 6 89888755443346789999999999998878888999999999999999888777999875
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=279.40 Aligned_cols=243 Identities=21% Similarity=0.311 Sum_probs=210.5
Q ss_pred CCCCCccccCCccccc---------------------------ccCccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYH---------------------------FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~---------------------------~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++.+|++ ||+|++ +..+|+|+||+++|++.++++|+++++++|| ++.++
T Consensus 91 G~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~ 168 (370)
T 4ej6_A 91 GSAVRDIAP-GARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPL 168 (370)
T ss_dssp CTTCCSSCT-TCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHH
T ss_pred CCCCCCCCC-CCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHH
Confidence 567777888 888864 2346999999999999999999999999998 55699
Q ss_pred hhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHh
Q 025257 56 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
+|||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|+++++++++.++++++|++.++|+++ .++.+.+++
T Consensus 169 ~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~--~~~~~~i~~ 245 (370)
T 4ej6_A 169 ACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSA--GDVVEAIAG 245 (370)
T ss_dssp HHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTS--SCHHHHHHS
T ss_pred HHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCC--cCHHHHHHh
Confidence 9999987 8899999999999999999999999999999978999999999999999999999999988 889999988
Q ss_pred ---hcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHH
Q 025257 136 ---LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLV 211 (255)
Q Consensus 136 ---~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~ 211 (255)
.+++++|+||||+|.+..++.++++++++ |+++.+|........+++...++. ++++.|+.... .++++++
T Consensus 246 ~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~-G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~----~~~~~~~ 320 (370)
T 4ej6_A 246 PVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINP----FVHRRAA 320 (370)
T ss_dssp TTSSSTTCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSCT----TCHHHHH
T ss_pred hhhccCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEeccCCCCccccCHHHHHhCCcEEEEeccCh----HHHHHHH
Confidence 77679999999999877699999999997 999999986554455677666655 99999986532 4699999
Q ss_pred HHHHcCCCCCCCcceeeeecchHHHHHHHhhCCC-e-eEEEEecCC
Q 025257 212 DKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD-C-LRCVLKMQD 255 (255)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vi~~~~ 255 (255)
+++++|++++.++++++|||+++++|++.+.+++ . .|+++++++
T Consensus 321 ~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~~ 366 (370)
T 4ej6_A 321 DLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAER 366 (370)
T ss_dssp HHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC---
T ss_pred HHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEcccc
Confidence 9999999998889999999999999999997765 3 398888753
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-41 Score=278.50 Aligned_cols=246 Identities=24% Similarity=0.373 Sum_probs=212.1
Q ss_pred CCCCCCccccCCcccccc------------------------------cCccceeeEEEEcCC--ceEEcCCCCCccccc
Q 025257 2 MNDRKSRFSINGKPIYHF------------------------------MGTSTFSQYTVVHDV--SVAKIDPQAPLDKVC 49 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~------------------------------~~~g~~ae~~~v~~~--~~~~~p~~~~~~~aa 49 (255)
+|+++.+|++ ||+|+.. ..+|+|+||+++|+. .++++|+++++++||
T Consensus 68 vG~~v~~~~v-GdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa 146 (352)
T 3fpc_A 68 VGSEVKDFKP-GDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAV 146 (352)
T ss_dssp ECTTCCSCCT-TCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHT
T ss_pred ECCCCCcCCC-CCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHh
Confidence 3677888888 8888731 145999999999986 899999999999999
Q ss_pred ccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchH
Q 025257 50 LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPI 129 (255)
Q Consensus 50 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~ 129 (255)
+++.+++|||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|+++++|+++ +++
T Consensus 147 ~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~~~ 223 (352)
T 3fpc_A 147 MIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN--GDI 223 (352)
T ss_dssp TTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGG--SCH
T ss_pred hccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCC--cCH
Confidence 9999999999987 8899999999999999999999999999999878999999999999999999999999987 899
Q ss_pred HHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhh---ccCcEEEEeeeCCCCccC
Q 025257 130 QQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL---VTGRVWKGTAFGGFKSRS 205 (255)
Q Consensus 130 ~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~ 205 (255)
.+.+++.+++ ++|+|||++|.+..++.++++++++ |+++.+|.......++++...+ +++.++.++.... ..+
T Consensus 224 ~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~--~~~ 300 (352)
T 3fpc_A 224 VEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPG--GRL 300 (352)
T ss_dssp HHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCC--HHH
T ss_pred HHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEecccCCCCceecchhHhhhhccccEEEEeeccC--chh
Confidence 9999999988 9999999999976699999999997 9999999865444444443322 3477888775321 235
Q ss_pred cHHHHHHHHHcCCCCCCCcceeeee-cchHHHHHHHhhCCC-e-eEEEEecC
Q 025257 206 QVPWLVDKYMKKEIKVDEYVTHNMT-LGEINEAFRYMHGGD-C-LRCVLKMQ 254 (255)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~-~-~k~vi~~~ 254 (255)
+++++++++++|++++.++++++|+ |+++++|++.+.+++ . .|+||+++
T Consensus 301 ~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~ 352 (352)
T 3fpc_A 301 RMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352 (352)
T ss_dssp HHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred HHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence 7899999999999998888999999 999999999998754 3 49999874
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=277.46 Aligned_cols=240 Identities=23% Similarity=0.275 Sum_probs=211.8
Q ss_pred CCCCCCccccCCcccccc------------------------cCccceeeEEEEcCCceEEcCCCCCcccccccccchhh
Q 025257 2 MNDRKSRFSINGKPIYHF------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 57 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~t 57 (255)
+|+++.+|++ ||+|++. ..+|+|+||+++|+++++++|+++++++||+++++++|
T Consensus 98 vG~~v~~~~v-GDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~t 176 (363)
T 3uog_A 98 VGKSVTRFRP-GDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLT 176 (363)
T ss_dssp ECTTCCSCCT-TCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHH
T ss_pred ECCCCCCCCC-CCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHH
Confidence 3678899999 9999864 12499999999999999999999999999999999999
Q ss_pred hhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhc
Q 025257 58 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 58 a~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
||+++.+..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++|+.+ +++.+.+++.+
T Consensus 177 a~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~v~~~~ 253 (363)
T 3uog_A 177 AWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLE--EDWVERVYALT 253 (363)
T ss_dssp HHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCEEEcCCc--ccHHHHHHHHh
Confidence 99999889999999999999999999999999999999 9999999999999999999999999655 78999999999
Q ss_pred CC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHH
Q 025257 138 DG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYM 215 (255)
Q Consensus 138 ~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 215 (255)
++ ++|++|||+|.+. ++.++++++++ |+++.+|.... ...+++...++. ++++.|+.... .+++++++++++
T Consensus 254 ~g~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~ 327 (363)
T 3uog_A 254 GDRGADHILEIAGGAG-LGQSLKAVAPD-GRISVIGVLEG-FEVSGPVGPLLLKSPVVQGISVGH---RRALEDLVGAVD 327 (363)
T ss_dssp TTCCEEEEEEETTSSC-HHHHHHHEEEE-EEEEEECCCSS-CEECCBTTHHHHTCCEEEECCCCC---HHHHHHHHHHHH
T ss_pred CCCCceEEEECCChHH-HHHHHHHhhcC-CEEEEEecCCC-cccCcCHHHHHhCCcEEEEEecCC---HHHHHHHHHHHH
Confidence 88 9999999999766 99999999997 99999998643 234556555554 99999987543 368999999999
Q ss_pred cCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEec
Q 025257 216 KKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
++++ ++.+.++||++++++|++.+.+++..|+||++
T Consensus 328 ~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~ 363 (363)
T 3uog_A 328 RLGL--KPVIDMRYKFTEVPEALAHLDRGPFGKVVIEF 363 (363)
T ss_dssp HHTC--CCCEEEEEEGGGHHHHHHTGGGCCSBEEEEEC
T ss_pred cCCC--ccceeeEEcHHHHHHHHHHHHcCCCccEEEeC
Confidence 9985 55688999999999999999888844999975
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=275.90 Aligned_cols=244 Identities=14% Similarity=0.203 Sum_probs=213.5
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
+|+++.+|++ ||+|+++..+|+|+||+++|++.++++|+++++++||+++.+++|||+++.+..+++++++|||+|+ |
T Consensus 100 vG~~v~~~~v-GdrV~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g 178 (353)
T 4dup_A 100 VGPGVSGYAV-GDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTS 178 (353)
T ss_dssp ECTTCCSCCT-TCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTS
T ss_pred ECCCCCCCCC-CCEEEEecCCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 3678899999 9999998888999999999999999999999999999999999999999988999999999999965 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~ 160 (255)
++|++++|+++..|+ +|+++++++++++.++++|++.++|+.+ .++.+.+++.+++++|++|||+|.+. ++.++++
T Consensus 179 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~ 254 (353)
T 4dup_A 179 GIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAKRGINYRS--EDFAAVIKAETGQGVDIILDMIGAAY-FERNIAS 254 (353)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHHSSCEEEEEESCCGGG-HHHHHHT
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeCCc--hHHHHHHHHHhCCCceEEEECCCHHH-HHHHHHH
Confidence 999999999999999 9999999999999999999999999988 88999999988449999999999987 9999999
Q ss_pred hccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCcc-------CcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 161 CHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSR-------SQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
++++ |+++.+|.........++...++. ++++.|+....+... +.++++++++++|++ ++.+.++|+++
T Consensus 255 l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~ 331 (353)
T 4dup_A 255 LAKD-GCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTV--APVIHKVFAFE 331 (353)
T ss_dssp EEEE-EEEEECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSS--CCCEEEEEEGG
T ss_pred hccC-CEEEEEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCc--cCCcceEEeHH
Confidence 9997 999999986543221255555554 999999887655321 116788999999996 45678999999
Q ss_pred hHHHHHHHhhCCCee-EEEEec
Q 025257 233 EINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 233 ~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++|++.+.+++.. |+||++
T Consensus 332 ~~~~A~~~l~~~~~~gKvvl~~ 353 (353)
T 4dup_A 332 DVADAHRLLEEGSHVGKVMLTV 353 (353)
T ss_dssp GHHHHHHHHHHTCCSSEEEEEC
T ss_pred HHHHHHHHHHhCCCCceEEEeC
Confidence 999999999888766 999975
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=270.33 Aligned_cols=238 Identities=22% Similarity=0.349 Sum_probs=207.2
Q ss_pred CCCCCccccCCcccc----------------------------cccCccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 3 NDRKSRFSINGKPIY----------------------------HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 3 g~~~~~~~~~g~~v~----------------------------~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
|+++.+|++ ||+|. ++..+|+|+||+++|+++++++|+++++++||+++++
T Consensus 73 G~~v~~~~v-GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~ 151 (340)
T 3s2e_A 73 GSGVSRVKE-GDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCA 151 (340)
T ss_dssp CSSCCSCCT-TCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTH
T ss_pred CCCCCcCCC-CCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcccch
Confidence 667777888 88882 2234699999999999999999999999999999999
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
+.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++|+++ .++.+.++
T Consensus 152 ~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~--~~~~~~~~ 227 (340)
T 3s2e_A 152 GVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARD--TDPAAWLQ 227 (340)
T ss_dssp HHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTT--SCHHHHHH
T ss_pred hHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCCC--cCHHHHHH
Confidence 99999988 77899999999999999999999999999999 9999999999999999999999999987 88988888
Q ss_pred hhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHH
Q 025257 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDK 213 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ 213 (255)
+ +.+++|++||++|....++.++++++++ |+++.+|... ...+++...++. ++++.|+.... .+++++++++
T Consensus 228 ~-~~g~~d~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l 300 (340)
T 3s2e_A 228 K-EIGGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPP--GDFGTPIFDVVLKGITIRGSIVGT---RSDLQESLDF 300 (340)
T ss_dssp H-HHSSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCS--SEEEEEHHHHHHTTCEEEECCSCC---HHHHHHHHHH
T ss_pred H-hCCCCCEEEEeCCCHHHHHHHHHHhccC-CEEEEeCCCC--CCCCCCHHHHHhCCeEEEEEecCC---HHHHHHHHHH
Confidence 8 4448999999999887799999999997 9999999864 344555555544 99999886543 3689999999
Q ss_pred HHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 214 YMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
+++|++++. .++|+++++++|++.+.+++.. |+||++++
T Consensus 301 ~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~ 340 (340)
T 3s2e_A 301 AAHGDVKAT---VSTAKLDDVNDVFGRLREGKVEGRVVLDFSR 340 (340)
T ss_dssp HHTTSCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred HHhCCCCce---EEEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 999997753 4688999999999999988876 99999875
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=270.41 Aligned_cols=240 Identities=20% Similarity=0.285 Sum_probs=205.9
Q ss_pred CCCCCccccCCcccccc----------------------------cCccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 3 NDRKSRFSINGKPIYHF----------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~----------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
|+++.+|++ ||+|+.. ..+|+|+||+++|+++++++|+++++++||++ .+
T Consensus 79 G~~V~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~ 156 (356)
T 1pl8_A 79 GSSVKHLKP-GDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-EP 156 (356)
T ss_dssp CTTCCSCCT-TCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-HH
T ss_pred CCCCCCCCC-CCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-ch
Confidence 667777888 8888643 13699999999999999999999999999876 48
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCC---CCCchHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK---DHDKPIQQ 131 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~---~~~~~~~~ 131 (255)
+.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++++++++ + .++.+
T Consensus 157 ~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~--~~~~~ 233 (356)
T 1pl8_A 157 LSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESP--QEIAR 233 (356)
T ss_dssp HHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCH--HHHHH
T ss_pred HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCccccc--chHHH
Confidence 89999988 788999999999999999999999999999987899999999999999999999999887 4 66778
Q ss_pred HHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHH
Q 025257 132 VLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWL 210 (255)
Q Consensus 132 ~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~ 210 (255)
.+++.+++++|+|||++|.+..++.++++++++ |+++.+|... ...+++...+.. ++++.|+... ..+++++
T Consensus 234 ~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~g~~~~----~~~~~~~ 306 (356)
T 1pl8_A 234 KVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS--EMTTVPLLHAAIREVDIKGVFRY----CNTWPVA 306 (356)
T ss_dssp HHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC--SCCCCCHHHHHHTTCEEEECCSC----SSCHHHH
T ss_pred HHHHHhCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEecCC--CCCccCHHHHHhcceEEEEeccc----HHHHHHH
Confidence 888777568999999999987689999999997 9999999743 234555555544 8999887532 3679999
Q ss_pred HHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEecC
Q 025257 211 VDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 254 (255)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~ 254 (255)
++++++|++++++.+.++||++++++|++.+.++...|+||+++
T Consensus 307 ~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~~ 350 (356)
T 1pl8_A 307 ISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCD 350 (356)
T ss_dssp HHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHHcCCCChHHheEEEecHHHHHHHHHHHhCCCceEEEEeCC
Confidence 99999999988888889999999999999998874449999885
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=269.40 Aligned_cols=228 Identities=19% Similarity=0.241 Sum_probs=195.6
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEE
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 100 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~ 100 (255)
.+|+|+||+++|+++++++|+++++++||+++ ++.++++ +....+++++++|||+|+|++|++++|+|+++|+..+++
T Consensus 113 ~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~ 190 (346)
T 4a2c_A 113 RDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTA 190 (346)
T ss_dssp BCCSSBSEEEEEGGGEEECCTTSCGGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred CCcccccccccchheEEECCCCCCHHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEE
Confidence 45999999999999999999999999999876 4555555 568899999999999999999999999999999966788
Q ss_pred EcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCc
Q 025257 101 IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 179 (255)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 179 (255)
++++++|+++++++|+++++|+++ .+..+.++..+++ ++|+|+|++|.+..++.++++++++ |+++.+|.......
T Consensus 191 ~~~~~~k~~~a~~lGa~~~i~~~~--~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~ 267 (346)
T 4a2c_A 191 IDISSEKLALAKSFGAMQTFNSSE--MSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLH 267 (346)
T ss_dssp EESCHHHHHHHHHTTCSEEEETTT--SCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT-CEEEECCCCSSCEE
T ss_pred EechHHHHHHHHHcCCeEEEeCCC--CCHHHHHHhhcccCCcccccccccccchhhhhhheecCC-eEEEEEeccCCCcc
Confidence 889999999999999999999998 8888888888887 9999999999988799999999997 99999998654322
Q ss_pred c-ccCchhhc-cCcEEEEeeeCCCC--ccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 180 I-STRPFQLV-TGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 180 ~-~~~~~~~~-~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
. ..+...++ +++++.|++..... ..++++++++++++|+++++++++++|||+++++|++.+.+++.. |+||++
T Consensus 268 ~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P 346 (346)
T 4a2c_A 268 LTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP 346 (346)
T ss_dssp ECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred ccccCHHHHhhceeEEEEEeccccCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence 2 22333444 49999998754322 345789999999999999999999999999999999999888766 999974
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=269.20 Aligned_cols=241 Identities=20% Similarity=0.276 Sum_probs=208.0
Q ss_pred CCCCCccccCCcccccc---------------------------cCccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYHF---------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~---------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++.+|++ ||+|++. ..+|+|+||+++|+++++++|+++++++||+++ ++
T Consensus 77 G~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~ 154 (348)
T 2d8a_A 77 GPGVEGIEV-GDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PL 154 (348)
T ss_dssp CTTCCSCCT-TCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH-HH
T ss_pred CCCCCcCCC-CCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh-HH
Confidence 667777888 8888753 245999999999999999999999999999886 88
Q ss_pred hhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHh
Q 025257 56 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
.|||+++ +..++ +|++|||+|+|++|++++|+++.+|+.+|+++++++++.++++++|+++++|+++ +++.+.+++
T Consensus 155 ~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~v~~ 230 (348)
T 2d8a_A 155 GNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFE--EDVVKEVMD 230 (348)
T ss_dssp HHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTT--SCHHHHHHH
T ss_pred HHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCC--cCHHHHHHH
Confidence 9999998 77889 9999999999999999999999999878999999999999999999999999987 889999999
Q ss_pred hcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCc-hhhcc-CcEEEEeeeCCCCccCcHHHHHH
Q 025257 136 LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP-FQLVT-GRVWKGTAFGGFKSRSQVPWLVD 212 (255)
Q Consensus 136 ~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~ 212 (255)
.+++ ++|+|||++|.+..++.++++++++ |+++.+|.... ..+++. ..++. ++++.|+.... ..++++++++
T Consensus 231 ~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~ 305 (348)
T 2d8a_A 231 ITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPG--KVTIDFNNLIIFKALTIYGITGRH--LWETWYTVSR 305 (348)
T ss_dssp HTTTSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSS--CCCCCHHHHTTTTTCEEEECCCCC--SHHHHHHHHH
T ss_pred HcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC--CcccCchHHHHhCCcEEEEecCCC--cHHHHHHHHH
Confidence 9887 8999999999966699999999997 99999998543 345555 45544 99999876432 1367899999
Q ss_pred HHHcCCCCCCCcceeeee-cchHHHHHHHhhCCCeeEEEEecC
Q 025257 213 KYMKKEIKVDEYVTHNMT-LGEINEAFRYMHGGDCLRCVLKMQ 254 (255)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~k~vi~~~ 254 (255)
++++|++++++.++++|| ++++++|++.+.++...|+||+++
T Consensus 306 l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~gKvvi~~~ 348 (348)
T 2d8a_A 306 LLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFMLK 348 (348)
T ss_dssp HHHHTCCCCTTTEEEEEESSTTHHHHHHHHHTTCCSEEEEEC-
T ss_pred HHHcCCCChHHhheeeCCCHHHHHHHHHHHhCCCceEEEEeeC
Confidence 999999888888889999 999999999997754459999864
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=272.73 Aligned_cols=242 Identities=21% Similarity=0.238 Sum_probs=205.4
Q ss_pred CCCCCCccccCCcccccc----------------------------cCccceeeEEEEcCCceEEcCCCCCccccccccc
Q 025257 2 MNDRKSRFSINGKPIYHF----------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 53 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~----------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~ 53 (255)
+|+++.+|++ ||+|+.. ..+|+|+||+++|+++++++|+ +++++||+++
T Consensus 87 vG~~v~~~~v-GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~~- 163 (363)
T 3m6i_A 87 VHPSVKSIKV-GDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLE- 163 (363)
T ss_dssp ECTTCCSCCT-TCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHHH-
T ss_pred ECCCCCCCCC-CCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHHhhh-
Confidence 3677888888 8888743 2469999999999999999999 9999999885
Q ss_pred chhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCC---CCchHH
Q 025257 54 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD---HDKPIQ 130 (255)
Q Consensus 54 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~ 130 (255)
++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+++|++++++++++++++++ ++.++++.. .++++.
T Consensus 164 ~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~ 241 (363)
T 3m6i_A 164 PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESA 241 (363)
T ss_dssp HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHH
T ss_pred HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHH
Confidence 889999988 889999999999999999999999999999994499999999999999999 655544321 126788
Q ss_pred HHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHH
Q 025257 131 QVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVP 208 (255)
Q Consensus 131 ~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~ 208 (255)
+.+++.+++ ++|+||||+|++..++.++++++++ |+++.+|.... ...++...+.. ++++.++... .++++
T Consensus 242 ~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~i~g~~~~----~~~~~ 314 (363)
T 3m6i_A 242 KKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGKN--EIQIPFMRASVREVDLQFQYRY----CNTWP 314 (363)
T ss_dssp HHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECCCCCS--CCCCCHHHHHHHTCEEEECCSC----SSCHH
T ss_pred HHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEccCCC--CccccHHHHHhcCcEEEEccCC----HHHHH
Confidence 999999988 9999999999986699999999997 99999998543 33455555555 9999888643 47899
Q ss_pred HHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCC-Cee-EEEEecCC
Q 025257 209 WLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG-DCL-RCVLKMQD 255 (255)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~-k~vi~~~~ 255 (255)
++++++++|++++.+.++++||++++++||+.+.++ ... |+||+.++
T Consensus 315 ~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~ 363 (363)
T 3m6i_A 315 RAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE 363 (363)
T ss_dssp HHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred HHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence 999999999998888898999999999999999886 344 99999864
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=270.66 Aligned_cols=234 Identities=23% Similarity=0.345 Sum_probs=200.7
Q ss_pred CCCCCccccCCccccccc---------------------------CccceeeEEEEcCCceEEcCCCCCccccc---ccc
Q 025257 3 NDRKSRFSINGKPIYHFM---------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVC---LLG 52 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa---~~~ 52 (255)
|+++.+|++ ||+|+++. .+|+|+||+++|+++++++|+++++++|| .++
T Consensus 89 G~~v~~~~v-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~ 167 (359)
T 1h2b_A 89 AEGVEGLEK-GDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLA 167 (359)
T ss_dssp CTTCCSCCT-TCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGG
T ss_pred CCCCCCCCC-CCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhccchh
Confidence 566777777 77775432 36999999999999999999999999998 788
Q ss_pred cchhhhhhHHHhh-cCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHH
Q 025257 53 CGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 130 (255)
Q Consensus 53 ~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~ 130 (255)
+++.|||+++.+. .++++|++|||+|+|++|++++|+|+.+ |+ +|++++++++++++++++|+++++|+++ + +.
T Consensus 168 ~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~-~~ 243 (359)
T 1h2b_A 168 DAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAERLGADHVVDARR--D-PV 243 (359)
T ss_dssp THHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHHTTCSEEEETTS--C-HH
T ss_pred hhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHhCCCEEEeccc--h-HH
Confidence 8899999998665 8999999999999999999999999999 99 9999999999999999999999999987 6 88
Q ss_pred HHHHhhcCC-CccEEEecCCcHH--HHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCc
Q 025257 131 QVLVDLTDG-GVDYSFECIGNVS--VMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQ 206 (255)
Q Consensus 131 ~~i~~~~~~-~~d~v~d~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~ 206 (255)
+.+++.+++ ++|+|||++|.+. .++.++++ ++ |+++.+|..... +++...++ +++++.|+.... .++
T Consensus 244 ~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~-G~~v~~g~~~~~---~~~~~~~~~~~~~i~g~~~~~---~~~ 314 (359)
T 1h2b_A 244 KQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RM-GRLIIVGYGGEL---RFPTIRVISSEVSFEGSLVGN---YVE 314 (359)
T ss_dssp HHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EE-EEEEECCCSSCC---CCCHHHHHHTTCEEEECCSCC---HHH
T ss_pred HHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CC-CEEEEEeCCCCC---CCCHHHHHhCCcEEEEecCCC---HHH
Confidence 889888888 8999999999985 58888888 75 999999986432 45555544 499999876432 367
Q ss_pred HHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 207 VPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++++++++|++++ .+ ++||++++++|++.+.+++.. |+|+++
T Consensus 315 ~~~~~~l~~~g~l~~--~i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 359 (359)
T 1h2b_A 315 LHELVTLALQGKVRV--EV-DIHKLDEINDVLERLEKGEVLGRAVLIP 359 (359)
T ss_dssp HHHHHHHHHTTSCCC--CE-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred HHHHHHHHHcCCCcc--eE-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence 999999999999654 46 899999999999999888765 999874
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=267.82 Aligned_cols=241 Identities=20% Similarity=0.291 Sum_probs=204.7
Q ss_pred CCCCCccccCCcccccc----------------------------cCccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 3 NDRKSRFSINGKPIYHF----------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~----------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
|+++.+|++ ||+|++. ..+|+|+||+++|+++++++|+++++++||++ .+
T Consensus 76 G~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~ 153 (352)
T 1e3j_A 76 GKNVKHLKK-GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-EP 153 (352)
T ss_dssp CTTCCSCCT-TCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-HH
T ss_pred CCCCCCCCC-CCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-ch
Confidence 667777888 8888643 13699999999999999999999999999876 48
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
+.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++++++ +.++.+.++
T Consensus 154 ~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~-~~~~~~~i~ 230 (352)
T 1e3j_A 154 LSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDP-AKEEESSII 230 (352)
T ss_dssp HHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCT-TTSCHHHHH
T ss_pred HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCcc-cccHHHHHH
Confidence 88999988 78899999999999999999999999999999 8999999999999999999999998762 145667777
Q ss_pred hhcC---C-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHH
Q 025257 135 DLTD---G-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPW 209 (255)
Q Consensus 135 ~~~~---~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~ 209 (255)
+.++ + ++|++||++|.+..++.++++++++ |+++.+|... ...+++...+.. ++++.|+... ..++++
T Consensus 231 ~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~g~~~~----~~~~~~ 303 (352)
T 1e3j_A 231 ERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS--QMVTVPLVNACAREIDIKSVFRY----CNDYPI 303 (352)
T ss_dssp HHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCS--SCCCCCHHHHHTTTCEEEECCSC----SSCHHH
T ss_pred HHhccccCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC--CCccccHHHHHhcCcEEEEeccc----hHHHHH
Confidence 7775 4 8999999999986689999999997 9999999743 234455555544 8999887532 367999
Q ss_pred HHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCC--eeEEEEecCC
Q 025257 210 LVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD--CLRCVLKMQD 255 (255)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~k~vi~~~~ 255 (255)
+++++++|++++++.+.++||++++++|++.+.+++ ..|+||++++
T Consensus 304 ~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~ 351 (352)
T 1e3j_A 304 ALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ 351 (352)
T ss_dssp HHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECCC
T ss_pred HHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 999999999888888889999999999999998775 4499998863
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=267.08 Aligned_cols=221 Identities=23% Similarity=0.301 Sum_probs=192.8
Q ss_pred CccceeeEEEEc-CCceEEcCCCCCcccccccccchhhhhhHHHh-hcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeE
Q 025257 21 GTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN-TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRV 98 (255)
Q Consensus 21 ~~g~~ae~~~v~-~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v 98 (255)
.+|+|+||+++| ++.++++|+ +++++||+++++++|||+++.+ ...++++++|||+|+|++|++++|+|+.+|..+|
T Consensus 121 ~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~V 199 (345)
T 3jv7_A 121 SPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARV 199 (345)
T ss_dssp BCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEE
T ss_pred CCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEE
Confidence 469999999999 899999999 9999999999999999999866 4589999999999999999999999999943399
Q ss_pred EEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCC
Q 025257 99 IGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 177 (255)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~ 177 (255)
++++++++++++++++|++++++++ .++.+.+++.+++ ++|+||||+|.+..++.++++++++ |+++.+|....
T Consensus 200 i~~~~~~~~~~~~~~lGa~~~i~~~---~~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~- 274 (345)
T 3jv7_A 200 IAVDLDDDRLALAREVGADAAVKSG---AGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAG- 274 (345)
T ss_dssp EEEESCHHHHHHHHHTTCSEEEECS---TTHHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCTT-
T ss_pred EEEcCCHHHHHHHHHcCCCEEEcCC---CcHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCC-
Confidence 9999999999999999999999886 5788899999988 9999999999986699999999997 99999998643
Q ss_pred CccccCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 178 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 178 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
...+++...+.+++++.++.... .++++++++++++|++++ +.++|+++++++|++.+.+++.. |+||++
T Consensus 275 ~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~---~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p 345 (345)
T 3jv7_A 275 AHAKVGFFMIPFGASVVTPYWGT---RSELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIRGRGVVVP 345 (345)
T ss_dssp CCEEESTTTSCTTCEEECCCSCC---HHHHHHHHHHHHTTCCCC---CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred CCCCcCHHHHhCCCEEEEEecCC---HHHHHHHHHHHHcCCCce---EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence 24455543344499998886543 368999999999999876 35899999999999999888766 999874
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=268.57 Aligned_cols=244 Identities=15% Similarity=0.188 Sum_probs=208.6
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
+|+++.+|++ ||+|+++..+|+|+||+++|++.++++|+++++++||++++.++|||+++.+..++++|++|||+|+ |
T Consensus 77 vG~~v~~~~v-GdrV~~~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g 155 (340)
T 3gms_A 77 VGAFVSRELI-GKRVLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGS 155 (340)
T ss_dssp ECTTSCGGGT-TCEEEECSSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTS
T ss_pred eCCCCCCCCC-CCEEEecCCCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCcc
Confidence 3778899999 9999988888999999999999999999999999999999999999999989999999999999998 6
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALE 159 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~ 159 (255)
++|++++|+++..|+ +|+++++++++.+.++++|+++++|+.+ .++.+.+++.+++ ++|++|||+|.+. ....++
T Consensus 156 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~~--~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~ 231 (340)
T 3gms_A 156 AIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTST--APLYETVMELTNGIGADAAIDSIGGPD-GNELAF 231 (340)
T ss_dssp HHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEETTT--SCHHHHHHHHTTTSCEEEEEESSCHHH-HHHHHH
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCCc--ccHHHHHHHHhCCCCCcEEEECCCChh-HHHHHH
Confidence 999999999999999 9999999999999999999999999987 8899999999988 9999999999988 677789
Q ss_pred HhccCCceEEEEccCCCCCccccCchhhc--cCcEEEEeeeCCC-------CccCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 160 CCHKGWGTSVIVGVAASGQEISTRPFQLV--TGRVWKGTAFGGF-------KSRSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 160 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
+++++ |+++.+|.... . +++...+. ..+.+..+.+..+ ...++++++++++++|++++.. +.++||
T Consensus 232 ~l~~~-G~iv~~G~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~~ 306 (340)
T 3gms_A 232 SLRPN-GHFLTIGLLSG-I--QVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTYE 306 (340)
T ss_dssp TEEEE-EEEEECCCTTS-C--CCCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEEEEE
T ss_pred HhcCC-CEEEEEeecCC-C--CCCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccEEEe
Confidence 99997 99999998643 2 23332322 2445544432211 1135688999999999988754 678999
Q ss_pred cchHHHHHHHhhCCC-e-eEEEEecCC
Q 025257 231 LGEINEAFRYMHGGD-C-LRCVLKMQD 255 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~-~-~k~vi~~~~ 255 (255)
++++++|++.+.+++ . .|+++++.+
T Consensus 307 l~~~~~A~~~~~~~~~~~GKvvl~~~~ 333 (340)
T 3gms_A 307 LADVKAAVDVVQSAEKTKGKVFLTSYE 333 (340)
T ss_dssp GGGHHHHHHHHHCTTCCSSEEEEECC-
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 999999999998886 4 599999853
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=268.09 Aligned_cols=240 Identities=21% Similarity=0.243 Sum_probs=202.9
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
+|+++. |++ ||+|+++..+|+|+||++++++.++++|+++++++||+++.+++|||+++.+..++++|++|||+|+ |
T Consensus 93 vG~~v~-~~v-GDrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg 170 (342)
T 4eye_A 93 APEGSG-IKP-GDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAG 170 (342)
T ss_dssp CCTTSS-CCT-TCEEEEECSSCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTS
T ss_pred ECCCCC-CCC-CCEEEEecCCCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence 467788 999 9999998778999999999999999999999999999999999999999989999999999999998 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALE 159 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~ 159 (255)
++|++++|+++..|+ +|++++++++++++++++|++.++++. +++.+.+++.+++ ++|++|||+|.+. ++.+++
T Consensus 171 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~v~~~~---~~~~~~v~~~~~~~g~Dvvid~~g~~~-~~~~~~ 245 (342)
T 4eye_A 171 GIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPLE---EGWAKAVREATGGAGVDMVVDPIGGPA-FDDAVR 245 (342)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEESS---TTHHHHHHHHTTTSCEEEEEESCC--C-HHHHHH
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEecCc---hhHHHHHHHHhCCCCceEEEECCchhH-HHHHHH
Confidence 999999999999999 999999999999999999999999876 6788899999988 9999999999986 999999
Q ss_pred HhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCC------ccCcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 160 CCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFK------SRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 160 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
+++++ |+++.+|..... ...++...++. ++++.|+..+.+. ..+.++++++++++| + ++.+.++|+++
T Consensus 246 ~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l--~~~i~~~~~l~ 320 (342)
T 4eye_A 246 TLASE-GRLLVVGFAAGG-IPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG-M--RPPVSARIPLS 320 (342)
T ss_dssp TEEEE-EEEEEC-----------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT-C--CCCEEEEEEGG
T ss_pred hhcCC-CEEEEEEccCCC-CCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC-C--CCCcceEEeHH
Confidence 99997 999999976432 23444444444 9999998754321 113578899999999 4 45678999999
Q ss_pred hHHHHHHHhhCCCee-EEEEec
Q 025257 233 EINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 233 ~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++|++.+.+++.. |+||++
T Consensus 321 ~~~~A~~~~~~~~~~gKvvl~P 342 (342)
T 4eye_A 321 EGRQALQDFADGKVYGKMVLVP 342 (342)
T ss_dssp GHHHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHHHHHHHhCCCCceEEEeC
Confidence 999999999988876 999874
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-39 Score=266.93 Aligned_cols=241 Identities=21% Similarity=0.267 Sum_probs=210.0
Q ss_pred CCCCCCccccCCcccccc----------------------------cCccceeeEEEEcCCceEEcCCCCCccccccccc
Q 025257 2 MNDRKSRFSINGKPIYHF----------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 53 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~----------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~ 53 (255)
+|+++.+|++ ||+|+.. ..+|+|+||+.+++.+++++|+++++++||++++
T Consensus 69 vG~~V~~~~~-GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~ 147 (348)
T 4eez_A 69 IGADVSSLQV-GDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITC 147 (348)
T ss_dssp ECTTCCSCCT-TCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHH
T ss_pred ECceeeeccc-CCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhccc
Confidence 3678889999 9988531 2349999999999999999999999999999999
Q ss_pred chhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHH
Q 025257 54 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVL 133 (255)
Q Consensus 54 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i 133 (255)
+++|||+++ +..++++|++|||+|+|++|++++|+++.++..+|++++++++|+++++++|+++++|+++ .++.+++
T Consensus 148 ~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~--~~~~~~v 224 (348)
T 4eez_A 148 AGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGD--VNPVDEI 224 (348)
T ss_dssp HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C--CCHHHHH
T ss_pred ceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC--CCHHHHh
Confidence 999999976 6788999999999999999999999999875449999999999999999999999999998 8999999
Q ss_pred HhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHH
Q 025257 134 VDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLV 211 (255)
Q Consensus 134 ~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~ 211 (255)
++.+++ ++|.++++++++..+...+++++++ |+++.+|... ...+++...++. ++++.|+..+. +.++++++
T Consensus 225 ~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~i~gs~~~~---~~~~~~~~ 298 (348)
T 4eez_A 225 KKITGGLGVQSAIVCAVARIAFEQAVASLKPM-GKMVAVAVPN--TEMTLSVPTVVFDGVEVAGSLVGT---RLDLAEAF 298 (348)
T ss_dssp HHHTTSSCEEEEEECCSCHHHHHHHHHTEEEE-EEEEECCCCS--CEEEECHHHHHHSCCEEEECCSCC---HHHHHHHH
T ss_pred hhhcCCCCceEEEEeccCcchhheeheeecCC-ceEEEEeccC--CCCccCHHHHHhCCeEEEEEecCC---HHHHHHHH
Confidence 999999 9999999999988899999999997 9999999754 344556555555 99999987553 36799999
Q ss_pred HHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 212 DKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
+++++|++++ . .++|||+++++|++.+.+++.. |+||++++
T Consensus 299 ~l~~~g~i~p--~-~~~~~l~~~~~A~~~l~~g~~~GKvVl~~sk 340 (348)
T 4eez_A 299 QFGAEGKVKP--I-VATRKLEEINDIIDEMKAGKIEGRMVIDFTK 340 (348)
T ss_dssp HHHHTTSCCC--C-EEEECGGGHHHHHHHHHTTCCSSEEEEECC-
T ss_pred HHHHcCCCEE--E-EEEEeHHHHHHHHHHHHCCCCccEEEEEccc
Confidence 9999999754 3 4799999999999999998876 99999864
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=264.03 Aligned_cols=244 Identities=20% Similarity=0.290 Sum_probs=212.3
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEc-CCceEEcCCCCCccc---ccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDK---VCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~-~~~~~~~p~~~~~~~---aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
+|+++.+|++ ||+|+++ .+|+|+||++++ ++.++++|+++++++ +|+++++++|||+++.+..++++|++|||+
T Consensus 78 vG~~v~~~~~-GdrV~~~-~~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ 155 (334)
T 3qwb_A 78 KGKGVTNFEV-GDQVAYI-SNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLF 155 (334)
T ss_dssp ECTTCCSCCT-TCEEEEE-CSSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEES
T ss_pred ECCCCCCCCC-CCEEEEe-eCCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEE
Confidence 4778899999 9999876 479999999999 999999999999999 888888999999999888899999999999
Q ss_pred cC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHH
Q 025257 78 GL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMR 155 (255)
Q Consensus 78 G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~ 155 (255)
|+ |++|++++|+++..|+ +|+++++++++++.++++|++.++|+.+ +++.+.+++.+++ ++|++|||+|.+. ++
T Consensus 156 Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~--~~~~~~~~~~~~~~g~D~vid~~g~~~-~~ 231 (334)
T 3qwb_A 156 AAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASK--EDILRQVLKFTNGKGVDASFDSVGKDT-FE 231 (334)
T ss_dssp STTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT--SCHHHHHHHHTTTSCEEEEEECCGGGG-HH
T ss_pred CCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEeCCC--chHHHHHHHHhCCCCceEEEECCChHH-HH
Confidence 95 9999999999999999 9999999999999999999999999988 8999999999987 9999999999966 99
Q ss_pred HHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCc-cC----cHHHHHHHHHcCCCCCCCcceeee
Q 025257 156 AALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKS-RS----QVPWLVDKYMKKEIKVDEYVTHNM 229 (255)
Q Consensus 156 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~ 229 (255)
.++++++++ |+++.+|.... ...+++...+.. ++++.++.+..+.. .. .++++++++++|++++. +.++|
T Consensus 232 ~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~ 307 (334)
T 3qwb_A 232 ISLAALKRK-GVFVSFGNASG-LIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIK--IYKTY 307 (334)
T ss_dssp HHHHHEEEE-EEEEECCCTTC-CCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCC--EEEEE
T ss_pred HHHHHhccC-CEEEEEcCCCC-CCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCc--eeeEE
Confidence 999999997 99999998643 223455555544 88998876554321 12 34688999999997664 77899
Q ss_pred ecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 230 TLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
|++++++||+.+.+++.. |+||++++
T Consensus 308 ~l~~~~~A~~~~~~~~~~gKvvi~~~q 334 (334)
T 3qwb_A 308 PLRDYRTAAADIESRKTVGKLVLEIPQ 334 (334)
T ss_dssp EGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred cHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 999999999999888766 99999864
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=268.01 Aligned_cols=247 Identities=18% Similarity=0.265 Sum_probs=208.8
Q ss_pred CCCCC-CccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-
Q 025257 2 MNDRK-SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL- 79 (255)
Q Consensus 2 ~g~~~-~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~- 79 (255)
+|+++ .+|++ ||+|+++...|+|+||+++|+++++++|+++++++||+++.+++|||+++.+..++++|++|||+|+
T Consensus 94 vG~~v~~~~~v-GdrV~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ 172 (354)
T 2j8z_A 94 LGPGCQGHWKI-GDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGL 172 (354)
T ss_dssp ECSCC--CCCT-TCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTT
T ss_pred ECCCcCCCCCC-CCEEEEecCCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence 36788 89999 9999988777999999999999999999999999999999999999999988899999999999996
Q ss_pred ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHH
Q 025257 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAAL 158 (255)
Q Consensus 80 g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~ 158 (255)
|++|++++|+++..|+ +|+++++++++.+.++++|++.++|+.+ .++.+.+.+.+++ ++|++|||+|.+. ++.++
T Consensus 173 ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~G~~~-~~~~~ 248 (354)
T 2j8z_A 173 SGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKK--EDFSEATLKFTKGAGVNLILDCIGGSY-WEKNV 248 (354)
T ss_dssp SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHTTTSCEEEEEESSCGGG-HHHHH
T ss_pred cHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC--hHHHHHHHHHhcCCCceEEEECCCchH-HHHHH
Confidence 9999999999999999 9999999999999999999999999887 8888899888877 8999999999986 99999
Q ss_pred HHhccCCceEEEEccCCCCCccccCc-hhhc-cCcEEEEeeeCCCCcc-------CcHHHHHHHHHcC-CCCCCCcceee
Q 025257 159 ECCHKGWGTSVIVGVAASGQEISTRP-FQLV-TGRVWKGTAFGGFKSR-------SQVPWLVDKYMKK-EIKVDEYVTHN 228 (255)
Q Consensus 159 ~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~-~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~ 228 (255)
++++++ |+++.+|.... ...+++. ..++ +++++.|+........ ..++++++++++| ++.+++.+.++
T Consensus 249 ~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~ 326 (354)
T 2j8z_A 249 NCLALD-GRWVLYGLMGG-GDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRI 326 (354)
T ss_dssp HHEEEE-EEEEECCCTTC-SCCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEE
T ss_pred HhccCC-CEEEEEeccCC-CccCCChhHHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceE
Confidence 999997 99999998643 2334555 4444 4999999876543211 0123577888889 44466778899
Q ss_pred eecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 229 MTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
||++++++|++.+.+++.. |+|+++++
T Consensus 327 ~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 354 (354)
T 2j8z_A 327 YPVTEIQEAHKYMEANKNIGKIVLELPQ 354 (354)
T ss_dssp EEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred EcHHHHHHHHHHHHhCCCCceEEEecCC
Confidence 9999999999999887655 99998763
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=265.28 Aligned_cols=241 Identities=22% Similarity=0.309 Sum_probs=207.2
Q ss_pred CCCCCccccCCcccccc---------------------------cCccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYHF---------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~---------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++.+|++ ||+|++. ..+|+|+||+++|+++++++|+++++++||+++ ++
T Consensus 73 G~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~ 150 (343)
T 2dq4_A 73 GPGVRRPQV-GDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILE-PF 150 (343)
T ss_dssp CTTCCSSCT-TCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTHH-HH
T ss_pred CCCCCcCCC-CCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhhh-HH
Confidence 667777888 8888753 246999999999999999999999999999874 78
Q ss_pred hhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHh
Q 025257 56 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
.|||+++.+..++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++ +++++|+++ +++.+.+++
T Consensus 151 ~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~--~~~~~~~~~ 226 (343)
T 2dq4_A 151 GNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLE--EDLLEVVRR 226 (343)
T ss_dssp HHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTT--SCHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCc--cCHHHHHHH
Confidence 8999998558889 999999999999999999999999987899999999999999999 999999987 889999998
Q ss_pred hcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCc-hhhcc-CcEEEEeeeCCCCccCcHHHHHHH
Q 025257 136 LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP-FQLVT-GRVWKGTAFGGFKSRSQVPWLVDK 213 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ 213 (255)
.+++++|+|||++|.+..++.++++++++ |+++.+|... ...+++. ..++. ++++.|+.... ..+++++++++
T Consensus 227 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~--~~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l 301 (343)
T 2dq4_A 227 VTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPS--DPIRFDLAGELVMRGITAFGIAGRR--LWQTWMQGTAL 301 (343)
T ss_dssp HHSSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCS--SCEEECHHHHTGGGTCEEEECCSCC--TTHHHHHHHHH
T ss_pred hcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC--CCceeCcHHHHHhCceEEEEeecCC--CHHHHHHHHHH
Confidence 88339999999999966699999999997 9999999853 3345665 55444 99999886431 23679999999
Q ss_pred HHcCCCCCCCcceeeeecchHHHHHHHhhCCCeeEEEEecC
Q 025257 214 YMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 254 (255)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~~~ 254 (255)
+++|++++++.++++||++++++|++.+.+++..|+||+++
T Consensus 302 ~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvv~~~~ 342 (343)
T 2dq4_A 302 VYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVILDPK 342 (343)
T ss_dssp HHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSCSEEEEETT
T ss_pred HHcCCCChHHheeEEecHHHHHHHHHHHhcCCceEEEEeeC
Confidence 99999888888889999999999999987766689999875
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=262.35 Aligned_cols=238 Identities=24% Similarity=0.362 Sum_probs=203.8
Q ss_pred CCCCCccccCCcccccc----------------------------cCccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 3 NDRKSRFSINGKPIYHF----------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~----------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
|+++.+|++ ||+|+.. ..+|+|+||+++|+++++++|+++++++||+++++
T Consensus 71 G~~v~~~~v-GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~ 149 (339)
T 1rjw_A 71 GPGVTHLKV-GDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCA 149 (339)
T ss_dssp CTTCCSCCT-TCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTH
T ss_pred CCCCCcCCC-CCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhh
Confidence 566777777 8877531 23599999999999999999999999999999999
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
+.|||+++.+ .++++|++|||+|+|++|++++|+++..|+ +|+++++++++++.++++|++.++|+.+ +++.+.++
T Consensus 150 ~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~~--~~~~~~~~ 225 (339)
T 1rjw_A 150 GVTTYKALKV-TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLK--EDAAKFMK 225 (339)
T ss_dssp HHHHHHHHHH-HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTT--SCHHHHHH
T ss_pred HHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCCC--ccHHHHHH
Confidence 9999999855 489999999999998899999999999999 9999999999999999999999999887 78888888
Q ss_pred hhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcHHHHHHH
Q 025257 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDK 213 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 213 (255)
+.+ +++|++||++|.+..++.++++++++ |+++.+|.... ..+++...++ +++++.|+.... .+++++++++
T Consensus 226 ~~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l 298 (339)
T 1rjw_A 226 EKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPE--EMPIPIFDTVLNGIKIIGSIVGT---RKDLQEALQF 298 (339)
T ss_dssp HHH-SSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS--EEEEEHHHHHHTTCEEEECCSCC---HHHHHHHHHH
T ss_pred HHh-CCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCC--CCccCHHHHHhCCcEEEEeccCC---HHHHHHHHHH
Confidence 877 58999999999866699999999997 99999998643 3455555554 499998876432 3679999999
Q ss_pred HHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 214 YMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
+++|++++. .++||++++++|++.+.+++.. |+||++++
T Consensus 299 ~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 338 (339)
T 1rjw_A 299 AAEGKVKTI---IEVQPLEKINEVFDRMLKGQINGRVVLTLED 338 (339)
T ss_dssp HHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred HHcCCCCcc---EEEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 999997653 4789999999999999887655 99999864
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=266.65 Aligned_cols=248 Identities=17% Similarity=0.227 Sum_probs=205.9
Q ss_pred CCCCCCccccCCccccccc--------CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhh-cCC----
Q 025257 2 MNDRKSRFSINGKPIYHFM--------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-AKV---- 68 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~--------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~-~~~---- 68 (255)
+|+++.+|++ ||+|++.. .+|+|+||+++|+..++++|+++++++||+++++++|||+++.+. .++
T Consensus 77 vG~~v~~~~~-GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~ 155 (371)
T 3gqv_A 77 VGSDVTHIQV-GDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPS 155 (371)
T ss_dssp ECTTCCSCCT-TCEEEEECCTTCTTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSS
T ss_pred eCCCCCCCCC-CCEEEEeccCCCCCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCc
Confidence 4778899999 99998653 369999999999999999999999999999999999999998777 553
Q ss_pred -------CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCC
Q 025257 69 -------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 69 -------~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~ 140 (255)
++|++|||+|+ |++|++++|+|+..|+ +|++++ +++++++++++|+++++|+++ +++.+.+++.++++
T Consensus 156 ~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~vi~~~~--~~~~~~v~~~t~g~ 231 (371)
T 3gqv_A 156 ADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKSRGAEEVFDYRA--PNLAQTIRTYTKNN 231 (371)
T ss_dssp CSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS--TTHHHHHHHHTTTC
T ss_pred cccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHHcCCcEEEECCC--chHHHHHHHHccCC
Confidence 89999999998 9999999999999999 999997 789999999999999999998 89999999999888
Q ss_pred ccEEEecCCcHHHHHHHHHHh-ccCCceEEEEccCCC----CCccccC---chhhc-cCcEEEEeeeCCCCc------cC
Q 025257 141 VDYSFECIGNVSVMRAALECC-HKGWGTSVIVGVAAS----GQEISTR---PFQLV-TGRVWKGTAFGGFKS------RS 205 (255)
Q Consensus 141 ~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~----~~~~~~~---~~~~~-~~~~~~g~~~~~~~~------~~ 205 (255)
+|++|||+|++..++.+++++ +++ |+++.+|.... ....+.+ ...++ +++++.|+....... .+
T Consensus 232 ~d~v~d~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~ 310 (371)
T 3gqv_A 232 LRYALDCITNVESTTFCFAAIGRAG-GHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGED 310 (371)
T ss_dssp CCEEEESSCSHHHHHHHHHHSCTTC-EEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHH
T ss_pred ccEEEECCCchHHHHHHHHHhhcCC-CEEEEEecCccccccccccceeeeeeeeeccccccccccccccccHHHHHHHHH
Confidence 999999999977799999999 586 99999996542 1112211 11233 477777664332221 01
Q ss_pred cHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCe-e-EEEEecCC
Q 025257 206 QVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC-L-RCVLKMQD 255 (255)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~-k~vi~~~~ 255 (255)
.++++++++++|++++...+.++|+++++++|++.+.+++. . |+|+++++
T Consensus 311 ~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkvvv~~~~ 362 (371)
T 3gqv_A 311 LWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVRLEG 362 (371)
T ss_dssp HHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEEEEEECC
T ss_pred HHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEEEEEeCC
Confidence 24578899999999998887778999999999999988764 3 88888753
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=262.55 Aligned_cols=242 Identities=15% Similarity=0.173 Sum_probs=204.1
Q ss_pred CCCCCCccccCCccccccc---CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCC------CCC
Q 025257 2 MNDRKSRFSINGKPIYHFM---GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE------PGS 72 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~---~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~------~~~ 72 (255)
+|+++.+|++ ||+|++.. .+|+|+||+++|++.++++|+++++++||+++++++|||+++.+..+++ +|+
T Consensus 74 vG~~v~~~~~-GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~ 152 (346)
T 3fbg_A 74 VGNEVTMFNQ-GDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGK 152 (346)
T ss_dssp ECTTCCSCCT-TCEEEECCCTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTC
T ss_pred eCCCCCcCCC-CCEEEEcCCCCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCC
Confidence 3678899999 99998653 3699999999999999999999999999999999999999998899998 999
Q ss_pred EEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 73 IVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 73 ~vlI~G-~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
+|||+| +|++|++++|+++..|+ +|++++++++++++++++|++++++++ +++.+.+++..++++|++|||+|.+
T Consensus 153 ~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~---~~~~~~~~~~~~~g~Dvv~d~~g~~ 228 (346)
T 3fbg_A 153 TLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGADIVLNHK---ESLLNQFKTQGIELVDYVFCTFNTD 228 (346)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCSEEECTT---SCHHHHHHHHTCCCEEEEEESSCHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEECC---ccHHHHHHHhCCCCccEEEECCCch
Confidence 999996 59999999999999999 999999999999999999999999987 4577888887433999999999998
Q ss_pred HHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCC---------ccCcHHHHHHHHHcCCCCC
Q 025257 152 SVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFK---------SRSQVPWLVDKYMKKEIKV 221 (255)
Q Consensus 152 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 221 (255)
..++.++++++++ |+++.++... .+++...+.. ++++.++...... ..+.++++++++++|+++
T Consensus 229 ~~~~~~~~~l~~~-G~iv~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~- 302 (346)
T 3fbg_A 229 MYYDDMIQLVKPR-GHIATIVAFE----NDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQ- 302 (346)
T ss_dssp HHHHHHHHHEEEE-EEEEESSCCS----SCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSC-
T ss_pred HHHHHHHHHhccC-CEEEEECCCC----CCCccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEE-
Confidence 8789999999997 9999887532 2344445554 8888886543210 023578899999999965
Q ss_pred CCcceeee---ecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 222 DEYVTHNM---TLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 222 ~~~~~~~~---~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
+.+.++| +++++++|++.+.+++.. |+||++++
T Consensus 303 -~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~ 339 (346)
T 3fbg_A 303 -PTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE 339 (346)
T ss_dssp -CCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred -CCccceecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence 4466677 999999999999998877 99999863
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=261.89 Aligned_cols=243 Identities=21% Similarity=0.264 Sum_probs=207.2
Q ss_pred CCCCCCccccCCccccccc-CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-
Q 025257 2 MNDRKSRFSINGKPIYHFM-GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL- 79 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~-~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~- 79 (255)
+|+++.+|++ ||+|+... .+|+|+||+++|++.++++|+++++++||++++.++|||+++.+..++++|++|||+|+
T Consensus 72 vG~~v~~~~~-GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~ 150 (325)
T 3jyn_A 72 VGDEVTRFKV-GDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAA 150 (325)
T ss_dssp ECTTCCSCCT-TCEEEESSSSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTT
T ss_pred ECCCCCCCCC-CCEEEEecCCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 4778899999 99998654 47999999999999999999999999999999999999999988899999999999995
Q ss_pred ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHH
Q 025257 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAAL 158 (255)
Q Consensus 80 g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~ 158 (255)
|++|++++|+++..|+ +|+++++++++.+.++++|+++++|+.+ .++.+.+++.+++ ++|++|||+|.+. ++.++
T Consensus 151 g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~ 226 (325)
T 3jyn_A 151 GGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYSH--EDVAKRVLELTDGKKCPVVYDGVGQDT-WLTSL 226 (325)
T ss_dssp SHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHTTTCCEEEEEESSCGGG-HHHHH
T ss_pred cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC--ccHHHHHHHHhCCCCceEEEECCChHH-HHHHH
Confidence 9999999999999999 9999999999999999999999999988 8999999999988 9999999999976 99999
Q ss_pred HHhccCCceEEEEccCCCCCccccCchhhcc--CcEEEEeeeCCCC-ccCc----HHHHHHHHHcCCCCCCCcceeeeec
Q 025257 159 ECCHKGWGTSVIVGVAASGQEISTRPFQLVT--GRVWKGTAFGGFK-SRSQ----VPWLVDKYMKKEIKVDEYVTHNMTL 231 (255)
Q Consensus 159 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (255)
++++++ |+++.+|..... ...++...+.. ...+.+..+..+. ..++ ++++++++++|++++. +.++||+
T Consensus 227 ~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l 302 (325)
T 3jyn_A 227 DSVAPR-GLVVSFGNASGP-VSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVD--GIEQYAL 302 (325)
T ss_dssp TTEEEE-EEEEECCCTTCC-CCSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCC--CCEEEEG
T ss_pred HHhcCC-CEEEEEecCCCC-CCCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCc--cccEEcH
Confidence 999997 999999986532 22344444433 4555544332221 2233 3588999999997765 6789999
Q ss_pred chHHHHHHHhhCCCee-EEEEec
Q 025257 232 GEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 232 ~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
+++++|++.+.+++.. |+||.+
T Consensus 303 ~~~~~A~~~~~~~~~~Gkvvl~p 325 (325)
T 3jyn_A 303 KDAAKAQIELSARRTTGSTILIP 325 (325)
T ss_dssp GGHHHHHHHHHTTCCCSCEEEEC
T ss_pred HHHHHHHHHHHcCCCCceEEEeC
Confidence 9999999999988876 999874
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=261.46 Aligned_cols=240 Identities=21% Similarity=0.270 Sum_probs=206.4
Q ss_pred CCCCCCccccCCcccc-------c--------------------ccCccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 2 MNDRKSRFSINGKPIY-------H--------------------FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~-------~--------------------~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
+|+++.+|++ ||+|+ + +..+|+|+||+++|+++++++|+++++++||+++.+
T Consensus 72 vG~~v~~~~v-GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~ 150 (343)
T 2eih_A 72 VGPGVEGFAP-GDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLT 150 (343)
T ss_dssp ECSSCCSCCT-TCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHH
T ss_pred ECCCCCCCCC-CCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhh
Confidence 3677888888 88887 3 444699999999999999999999999999999999
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVL 133 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i 133 (255)
+.|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|++.++|+.+ +++.+.+
T Consensus 151 ~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~--~~~~~~~ 227 (343)
T 2eih_A 151 FLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYTH--PDWPKEV 227 (343)
T ss_dssp HHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTS--TTHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEcCCc--ccHHHHH
Confidence 9999999877689999999999998 9999999999999999 9999999999999999999999999887 7888888
Q ss_pred HhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcHHHHH
Q 025257 134 VDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLV 211 (255)
Q Consensus 134 ~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~ 211 (255)
++.+++ ++|++||++|.+. ++.++++++++ |+++.+|..... ...++...++ +++++.|+... ..+++++++
T Consensus 228 ~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~ 301 (343)
T 2eih_A 228 RRLTGGKGADKVVDHTGALY-FEGVIKATANG-GRIAIAGASSGY-EGTLPFAHVFYRQLSILGSTMA---SKSRLFPIL 301 (343)
T ss_dssp HHHTTTTCEEEEEESSCSSS-HHHHHHHEEEE-EEEEESSCCCSC-CCCCCTTHHHHTTCEEEECCSC---CGGGHHHHH
T ss_pred HHHhCCCCceEEEECCCHHH-HHHHHHhhccC-CEEEEEecCCCC-cCccCHHHHHhCCcEEEEecCc---cHHHHHHHH
Confidence 888877 8999999999655 99999999997 999999986432 2235555544 48999887532 246899999
Q ss_pred HHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 212 DKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
+++++|+++ +.++++|||+++++|++.+.+++.. |+|+++
T Consensus 302 ~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 342 (343)
T 2eih_A 302 RFVEEGKLK--PVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV 342 (343)
T ss_dssp HHHHHTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred HHHHcCCCC--CceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence 999999964 5678999999999999999887655 999976
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=267.30 Aligned_cols=223 Identities=23% Similarity=0.357 Sum_probs=192.9
Q ss_pred ccceeeEEEE-cCCceEEcCCCCCcc-cccccccchhhhhhHHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeE
Q 025257 22 TSTFSQYTVV-HDVSVAKIDPQAPLD-KVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRV 98 (255)
Q Consensus 22 ~g~~ae~~~v-~~~~~~~~p~~~~~~-~aa~~~~~~~ta~~~l~~~~~-~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v 98 (255)
+|+|+||+++ |+++++++|++++++ +|++++ +++|||+++ +..+ +++|++|||+|+|++|++++|+|+.+|+.+|
T Consensus 146 ~G~~aey~~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~V 223 (380)
T 1vj0_A 146 RGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENV 223 (380)
T ss_dssp CSSSBSEEEECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEE
T ss_pred CccccceEEEcccceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceE
Confidence 6999999999 999999999999999 777776 999999998 6778 9999999999999999999999999993399
Q ss_pred EEEcCCcchHHHHHhcCCcEEeCCC---CCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 99 IGIDIDPKKFDRAKNFGVTEFVNPK---DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 99 ~~~~~~~~~~~~~~~~g~~~vi~~~---~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++++++++++++++++|++++++++ + +++.+.+++.+++ ++|+|||++|.+..++.++++++++ |+++.+|..
T Consensus 224 i~~~~~~~~~~~~~~lGa~~vi~~~~~~~--~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~ 300 (380)
T 1vj0_A 224 IVIAGSPNRLKLAEEIGADLTLNRRETSV--EERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVA 300 (380)
T ss_dssp EEEESCHHHHHHHHHTTCSEEEETTTSCH--HHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCC
T ss_pred EEEcCCHHHHHHHHHcCCcEEEeccccCc--chHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEEecC
Confidence 9999999999999999999999987 6 7888999999888 9999999999865599999999997 999999986
Q ss_pred CCCCccccCchh-hcc-CcEEEEeeeCCCCccCcHHHHHHHHHc--CCCCCCCcceeeeecchHHHHHHHhhCCCeeEEE
Q 025257 175 ASGQEISTRPFQ-LVT-GRVWKGTAFGGFKSRSQVPWLVDKYMK--KEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCV 250 (255)
Q Consensus 175 ~~~~~~~~~~~~-~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~v 250 (255)
......+++... ++. ++++.|+.... .++++++++++++ |++ ++.+.++|||+++++|++.+.+++..|+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~Kvv 375 (380)
T 1vj0_A 301 VPQDPVPFKVYEWLVLKNATFKGIWVSD---TSHFVKTVSITSRNYQLL--SKLITHRLPLKEANKALELMESREALKVI 375 (380)
T ss_dssp SCCCCEEECHHHHTTTTTCEEEECCCCC---HHHHHHHHHHHHTCHHHH--GGGCCEEEEGGGHHHHHHHHHHTSCSCEE
T ss_pred CCCCCeeEchHHHHHhCCeEEEEeecCC---HHHHHHHHHHHHhhcCCe--eeEEEEEEeHHHHHHHHHHHhcCCCceEE
Confidence 412234566655 444 99999986542 3679999999999 986 55677899999999999998766533999
Q ss_pred EecC
Q 025257 251 LKMQ 254 (255)
Q Consensus 251 i~~~ 254 (255)
|+++
T Consensus 376 l~~~ 379 (380)
T 1vj0_A 376 LYPE 379 (380)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9875
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=273.62 Aligned_cols=241 Identities=16% Similarity=0.179 Sum_probs=206.9
Q ss_pred CCCCCCccccCCccccccc---------------------------CccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 2 MNDRKSRFSINGKPIYHFM---------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~---------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
+|+++.+|++ ||+|++.. .+|+||||+++|+++++++|+++++++||+++++
T Consensus 132 vG~~v~~~~v-GdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~ 210 (456)
T 3krt_A 132 TGPGVNAWQA-GDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLV 210 (456)
T ss_dssp ECTTCCSCCT-TCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHH
T ss_pred ECCCCCCCCC-CCEEEEeCCcccccccccccccccCccccccccCCCCCcccceEEechHHeeECCCCCCHHHHHHhhhH
Confidence 3678888999 99997531 2499999999999999999999999999999999
Q ss_pred hhhhhhHHHhh--cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCch---
Q 025257 55 VPTGLGAVWNT--AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP--- 128 (255)
Q Consensus 55 ~~ta~~~l~~~--~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~--- 128 (255)
++|||+++... .++++|++|||+|+ |++|++++|+|+..|+ +|++++++++++++++++|++.++|+.+ .+
T Consensus 211 ~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~--~d~~~ 287 (456)
T 3krt_A 211 NSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNA--EGYRF 287 (456)
T ss_dssp HHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTT--TTCCS
T ss_pred HHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCc--Ccccc
Confidence 99999998654 78999999999998 9999999999999999 9999999999999999999999999876 33
Q ss_pred --------------HHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcE
Q 025257 129 --------------IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRV 192 (255)
Q Consensus 129 --------------~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~ 192 (255)
+.+.+++.+++ ++|+||||+|++. +..++++++++ |+++.+|.... ...+++...+.. +.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~ 364 (456)
T 3krt_A 288 WKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRET-FGASVFVTRKG-GTITTCASTSG-YMHEYDNRYLWMSLKR 364 (456)
T ss_dssp EEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHHH-HHHHHHHEEEE-EEEEESCCTTC-SEEEEEHHHHHHTTCE
T ss_pred cccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCchh-HHHHHHHhhCC-cEEEEEecCCC-cccccCHHHHHhcCeE
Confidence 45788888887 9999999999965 99999999997 99999998643 344455555544 889
Q ss_pred EEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecC
Q 025257 193 WKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 193 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
+.|+....+ .++.++++++++|+++ +.++++|||+++++|++.+.+++.. |+||.+.
T Consensus 365 i~g~~~~~~---~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~eA~~~l~~~~~~GKvvv~~~ 422 (456)
T 3krt_A 365 IIGSHFANY---REAWEANRLIAKGRIH--PTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLCL 422 (456)
T ss_dssp EEECCSCCH---HHHHHHHHHHHTTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEESS
T ss_pred EEEeccCCH---HHHHHHHHHHHcCCcc--cceeEEEcHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence 988875543 4677899999999965 5688999999999999999888766 9998864
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=266.63 Aligned_cols=244 Identities=20% Similarity=0.293 Sum_probs=198.7
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
+|+++.+|++ ||+|+++..+|+|+||+++|+++++++|++++++++|+++++++|||+++.+..++++|++|||+|+ |
T Consensus 75 vG~~v~~~~~-GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G 153 (349)
T 4a27_A 75 LGDSVKGYEI-GDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGG 153 (349)
T ss_dssp ECTTCCSCCT-TCEEEEECSSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTS
T ss_pred eCCCCCCCCC-CCEEEEecCCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence 4678899999 9999998888999999999999999999999999999999999999999988999999999999998 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~ 160 (255)
++|++++|+|+.+|..+|++++ ++++++.++ +|++++++ .+ .++.+.+++.+++++|+||||+|++. ++.++++
T Consensus 154 ~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~-~~--~~~~~~~~~~~~~g~Dvv~d~~g~~~-~~~~~~~ 227 (349)
T 4a27_A 154 GVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFD-RN--ADYVQEVKRISAEGVDIVLDCLCGDN-TGKGLSL 227 (349)
T ss_dssp HHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEE-TT--SCHHHHHHHHCTTCEEEEEEECC--------CTT
T ss_pred HHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEc-CC--ccHHHHHHHhcCCCceEEEECCCchh-HHHHHHH
Confidence 9999999999999644888888 678888888 99999998 65 88999999888669999999999988 7999999
Q ss_pred hccCCceEEEEccCCCCC---------------ccccCchhhcc-CcEEEEeeeCCCC--------ccCcHHHHHHHHHc
Q 025257 161 CHKGWGTSVIVGVAASGQ---------------EISTRPFQLVT-GRVWKGTAFGGFK--------SRSQVPWLVDKYMK 216 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~~---------------~~~~~~~~~~~-~~~~~g~~~~~~~--------~~~~~~~~~~~~~~ 216 (255)
++++ |+++.+|...... ...++...++. +.++.|+....+. ..++++++++++++
T Consensus 228 l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (349)
T 4a27_A 228 LKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQ 306 (349)
T ss_dssp EEEE-EEEEEEC-------------------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred hhcC-CEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHC
Confidence 9997 9999999753111 01234444444 8889888653211 03568899999999
Q ss_pred CCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 217 KEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
|++ ++.++++|+++++++|++.+.+++.. |+||++++
T Consensus 307 g~l--~~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~~ 344 (349)
T 4a27_A 307 KKI--KPVVDSLWALEEVKEAMQRIHDRGNIGKLILDVEK 344 (349)
T ss_dssp TSC--CCCEEEEECGGGHHHHHHHHHTTCCSSEEEEETTC
T ss_pred CCc--cccccceECHHHHHHHHHHHHhCCCCceEEEecCC
Confidence 996 45688899999999999999888776 99999864
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=260.73 Aligned_cols=245 Identities=22% Similarity=0.321 Sum_probs=208.8
Q ss_pred CCCCCCccccCCcccccccC-ccceeeEEEEcCCceEEcCCCCCccc--ccccccchhhhhhHHHhhcCCCCCCEEEEEc
Q 025257 2 MNDRKSRFSINGKPIYHFMG-TSTFSQYTVVHDVSVAKIDPQAPLDK--VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 78 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~-~g~~ae~~~v~~~~~~~~p~~~~~~~--aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G 78 (255)
+|+++.+|++ ||+|+.... +|+|+||+++|++.++++|+++++++ ||+++.+++|||+++.+..+++++++|||+|
T Consensus 75 vG~~v~~~~~-GdrV~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~G 153 (333)
T 1wly_A 75 VGPGVTDFTV-GERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHA 153 (333)
T ss_dssp ECTTCCSCCT-TCEEEECSSSCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETT
T ss_pred ECCCCCCCCC-CCEEEEecCCCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEEC
Confidence 3678899999 999976544 79999999999999999999999999 9999999999999998789999999999999
Q ss_pred C-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHH
Q 025257 79 L-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRA 156 (255)
Q Consensus 79 ~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~ 156 (255)
+ |++|++++|+++..|+ +|+++++++++.+.++++|++.++|+.+ .++.+.+.+.+++ ++|++|||+|... ++.
T Consensus 154 a~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~i~~~~~~~~~d~vi~~~g~~~-~~~ 229 (333)
T 1wly_A 154 AAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHTINYST--QDFAEVVREITGGKGVDVVYDSIGKDT-LQK 229 (333)
T ss_dssp TTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHHTTCCEEEEEECSCTTT-HHH
T ss_pred CccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC--HHHHHHHHHHhCCCCCeEEEECCcHHH-HHH
Confidence 7 9999999999999999 9999999999999999999999999887 8888888888876 8999999999955 999
Q ss_pred HHHHhccCCceEEEEccCCCCCccccCch-hhcc-C--cEEEEeeeCCCCc----cCcHHHHHHHHHcCCCCCCCcceee
Q 025257 157 ALECCHKGWGTSVIVGVAASGQEISTRPF-QLVT-G--RVWKGTAFGGFKS----RSQVPWLVDKYMKKEIKVDEYVTHN 228 (255)
Q Consensus 157 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~-~--~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (255)
++++++++ |+++.+|.... ...+++.. .++. + +++.|++...+.. .+.++++++++++|+++ +.++++
T Consensus 230 ~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~ 305 (333)
T 1wly_A 230 SLDCLRPR-GMCAAYGHASG-VADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLH--SSVAKT 305 (333)
T ss_dssp HHHTEEEE-EEEEECCCTTC-CCCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCC--CCEEEE
T ss_pred HHHhhccC-CEEEEEecCCC-CcCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCcC--CCcceE
Confidence 99999997 99999998642 22345544 4444 7 8888875422111 13578999999999965 457899
Q ss_pred eecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 229 MTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
||++++++|++.+.+++.. |+|+++++
T Consensus 306 ~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 333 (333)
T 1wly_A 306 FPLREAAAAHKYMGGRQTIGSIVLLPQA 333 (333)
T ss_dssp EEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred EeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence 9999999999999877655 99999864
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=266.95 Aligned_cols=222 Identities=20% Similarity=0.258 Sum_probs=192.2
Q ss_pred CccceeeEEEEcCCceEEcCCCCCc------ccccccccchhhhhhHHHhh-cCCCCCCEEEEEcCChHHHHHHHHHHHc
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPL------DKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAA 93 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~------~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~vG~~a~~l~~~~ 93 (255)
.+|+|+||+++|++.++++|++++. .++|+++.+++|||+++... .++++|++|||+|+|++|++++|+|+.+
T Consensus 157 ~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~ 236 (404)
T 3ip1_A 157 VDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHA 236 (404)
T ss_dssp BCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred CCCCCcceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHc
Confidence 4699999999999999999998864 44888888999999998655 4899999999999999999999999999
Q ss_pred CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcH-HHHHHHHHHh----ccCCce
Q 025257 94 GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV-SVMRAALECC----HKGWGT 167 (255)
Q Consensus 94 g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~-~~~~~~~~~l----~~~~G~ 167 (255)
|+.+|++++++++++++++++|+++++|+++ .++.+.+++.+++ ++|+||||+|.+ ..++.+++++ +++ |+
T Consensus 237 Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~-G~ 313 (404)
T 3ip1_A 237 GASKVILSEPSEVRRNLAKELGADHVIDPTK--ENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN-AT 313 (404)
T ss_dssp TCSEEEEECSCHHHHHHHHHHTCSEEECTTT--SCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCC-CE
T ss_pred CCCEEEEECCCHHHHHHHHHcCCCEEEcCCC--CCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCC-cE
Confidence 9978999999999999999999999999988 8999999999998 999999999998 3477777788 997 99
Q ss_pred EEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCe
Q 025257 168 SVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC 246 (255)
Q Consensus 168 ~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 246 (255)
++.+|.... ..+++...+.. ++++.|+.... ...+++++++++++| +++.++++++|+|+++++|++.+..+
T Consensus 314 iv~~G~~~~--~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~~G-- 386 (404)
T 3ip1_A 314 VAIVARADA--KIPLTGEVFQVRRAQIVGSQGHS--GHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQTD-- 386 (404)
T ss_dssp EEECSCCCS--CEEECHHHHHHTTCEEEECCCCC--STTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTTTC--
T ss_pred EEEeCCCCC--CCcccHHHHhccceEEEEecCCC--chHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHhCC--
Confidence 999998653 34666666655 99999886432 236899999999999 88888899999999999999998743
Q ss_pred eEEEEec
Q 025257 247 LRCVLKM 253 (255)
Q Consensus 247 ~k~vi~~ 253 (255)
|+||++
T Consensus 387 -Kvvl~~ 392 (404)
T 3ip1_A 387 -KSLVKV 392 (404)
T ss_dssp -TTCSCE
T ss_pred -cEEEec
Confidence 666654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=257.66 Aligned_cols=238 Identities=17% Similarity=0.220 Sum_probs=204.5
Q ss_pred CCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccc--cccccchhhhhhHHHhhcCCCCCCEEEEEcC-Ch
Q 025257 5 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV--CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GT 81 (255)
Q Consensus 5 ~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~a--a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~ 81 (255)
++.+|++ ||+|++ .|+|+||+++|++.++++|+++++.++ |+++++++|||+++.+..++++|++|||+|+ |+
T Consensus 86 ~v~~~~v-GdrV~~---~G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~ 161 (336)
T 4b7c_A 86 KHPGFQA-GDYVNG---ALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGA 161 (336)
T ss_dssp CSTTCCT-TCEEEE---ECCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSH
T ss_pred CCCCCCC-CCEEec---cCCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCH
Confidence 5788999 999985 489999999999999999999987776 7899999999999989999999999999998 99
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHH
Q 025257 82 VGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALEC 160 (255)
Q Consensus 82 vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~ 160 (255)
+|++++|+++..|+ +|+++++++++.+.+ +++|++.++|+.+ +++.+.+.+.+++++|++|||+|.+. ++.++++
T Consensus 162 iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~ 237 (336)
T 4b7c_A 162 VGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGFDGAIDYKN--EDLAAGLKRECPKGIDVFFDNVGGEI-LDTVLTR 237 (336)
T ss_dssp HHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCSEEEETTT--SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTT
T ss_pred HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCEEEECCC--HHHHHHHHHhcCCCceEEEECCCcch-HHHHHHH
Confidence 99999999999999 999999999999999 8999999999988 88999999988669999999999876 9999999
Q ss_pred hccCCceEEEEccCCCC---C--ccccCchhhcc-CcEEEEeeeCCCCc--cCcHHHHHHHHHcCCCCCCCcceeeeecc
Q 025257 161 CHKGWGTSVIVGVAASG---Q--EISTRPFQLVT-GRVWKGTAFGGFKS--RSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232 (255)
Q Consensus 161 l~~~~G~~v~~g~~~~~---~--~~~~~~~~~~~-~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (255)
++++ |+++.+|..... . ..+++...++. ++++.|+....+.. .+.++++++++++|++++. +..+|+++
T Consensus 238 l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~ 314 (336)
T 4b7c_A 238 IAFK-ARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSR--EDIVEGLE 314 (336)
T ss_dssp EEEE-EEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCC--EEEEECGG
T ss_pred HhhC-CEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccc--eeeecCHH
Confidence 9997 999999876411 1 12344444544 99999987654321 2567899999999997766 34568999
Q ss_pred hHHHHHHHhhCCCee-EEEEec
Q 025257 233 EINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 233 ~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++||+.+.+++.. |+||++
T Consensus 315 ~~~~A~~~~~~~~~~gKvvi~~ 336 (336)
T 4b7c_A 315 TFPETLLKLFSGENFGKLVLKV 336 (336)
T ss_dssp GHHHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHHHHHHHcCCCCceEEEeC
Confidence 999999999988766 999975
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=257.98 Aligned_cols=240 Identities=20% Similarity=0.307 Sum_probs=203.0
Q ss_pred CCCCCCccccCCcccccccC-ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-
Q 025257 2 MNDRKSRFSINGKPIYHFMG-TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL- 79 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~-~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~- 79 (255)
+|+++.+|++ ||+|++... .|+|+||+++|+++++++|+++++++||+++++++|||+++.+..+++++++|||+|+
T Consensus 102 vG~~v~~~~v-GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~Gas 180 (351)
T 1yb5_A 102 VGDNASAFKK-GDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGAS 180 (351)
T ss_dssp ECTTCTTCCT-TCEEEESCCSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCS
T ss_pred ECCCCCCCCC-CCEEEEeCCCCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCC
Confidence 3678899999 999987643 6999999999999999999999999999999999999999987899999999999997
Q ss_pred ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHH
Q 025257 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAAL 158 (255)
Q Consensus 80 g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~ 158 (255)
|++|++++|+++..|+ +|+++++++++.+.++++|++.++|+.+ +++.+.+.+.+++ ++|++|||+|.+. ++.++
T Consensus 181 ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~--~~~~~~~~~~~~~~~~D~vi~~~G~~~-~~~~~ 256 (351)
T 1yb5_A 181 GGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHRE--VNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDL 256 (351)
T ss_dssp SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--TTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCCEEEeCCC--chHHHHHHHHcCCCCcEEEEECCChHH-HHHHH
Confidence 9999999999999999 9999999999999999999999999887 7888889888877 8999999999876 89999
Q ss_pred HHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHH----HHHHHHHcCCCCCCCcceeeeecch
Q 025257 159 ECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVP----WLVDKYMKKEIKVDEYVTHNMTLGE 233 (255)
Q Consensus 159 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (255)
++++++ |+++.+|... ..+++...++. +.++.|+.+.... .++++ .+.+++.+|++ ++.+.++||+++
T Consensus 257 ~~l~~~-G~iv~~g~~~---~~~~~~~~~~~~~~~i~g~~~~~~~-~~~~~~~~~~l~~~~~~g~l--~~~i~~~~~l~~ 329 (351)
T 1yb5_A 257 SLLSHG-GRVIVVGSRG---TIEINPRDTMAKESSIIGVTLFSST-KEEFQQYAAALQAGMEIGWL--KPVIGSQYPLEK 329 (351)
T ss_dssp HHEEEE-EEEEECCCCS---CEEECTHHHHTTTCEEEECCGGGCC-HHHHHHHHHHHHHHHHHTCC--CCCEEEEEEGGG
T ss_pred HhccCC-CEEEEEecCC---CCccCHHHHHhCCcEEEEEEeecCC-HHHHHHHHHHHHHHHHCCCc--cCccceEEcHHH
Confidence 999997 9999999642 23455555444 8999998653322 13343 45557778874 456788999999
Q ss_pred HHHHHHH-hhCCCee-EEEEec
Q 025257 234 INEAFRY-MHGGDCL-RCVLKM 253 (255)
Q Consensus 234 ~~~a~~~-~~~~~~~-k~vi~~ 253 (255)
+++|++. +.+++.. |+||++
T Consensus 330 ~~~A~~~~~~~~~~~gKvvi~~ 351 (351)
T 1yb5_A 330 VAEAHENIIHGSGATGKMILLL 351 (351)
T ss_dssp HHHHHHHHHHSSCCSSEEEEEC
T ss_pred HHHHHHHHHHhCCCCeEEEEeC
Confidence 9999998 6655544 999874
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=269.62 Aligned_cols=225 Identities=18% Similarity=0.250 Sum_probs=192.6
Q ss_pred ccceeeEEEEcCC--ceEEcCCCCCccc----ccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC
Q 025257 22 TSTFSQYTVVHDV--SVAKIDPQAPLDK----VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 95 (255)
Q Consensus 22 ~g~~ae~~~v~~~--~~~~~p~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~ 95 (255)
+|+|+||++++++ +++++|+++++++ +|+++.+++|||+++ +..++++|++|||+|+|++|++++|+|+.+|+
T Consensus 132 ~G~~aey~~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga 210 (398)
T 2dph_A 132 SGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGA 210 (398)
T ss_dssp CCSSBSEEEESSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred CceeeeeEEeccccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 5999999999987 8999999999998 888999999999998 78999999999999999999999999999998
Q ss_pred CeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchH-HHHHHhhcCC-CccEEEecCCcHH--------------HHHHHHH
Q 025257 96 SRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPI-QQVLVDLTDG-GVDYSFECIGNVS--------------VMRAALE 159 (255)
Q Consensus 96 ~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~-~~~i~~~~~~-~~d~v~d~~g~~~--------------~~~~~~~ 159 (255)
.+|++++++++++++++++|++ ++|+.+ .++ .+.+++.+++ ++|+|||++|.+. .++.+++
T Consensus 211 ~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~--~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~ 287 (398)
T 2dph_A 211 ACVIVGDQNPERLKLLSDAGFE-TIDLRN--SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFD 287 (398)
T ss_dssp SEEEEEESCHHHHHHHHTTTCE-EEETTS--SSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHcCCc-EEcCCC--cchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHH
Confidence 7899999999999999999996 888876 665 8889988888 8999999999752 4899999
Q ss_pred HhccCCceEEEEccCCC-----------CCccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCC--CCCcc
Q 025257 160 CCHKGWGTSVIVGVAAS-----------GQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK--VDEYV 225 (255)
Q Consensus 160 ~l~~~~G~~v~~g~~~~-----------~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 225 (255)
+++++ |+++.+|.... ....+++...++. ++++.++... ..++++++++++++|+++ +.+++
T Consensus 288 ~l~~g-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~~i 363 (398)
T 2dph_A 288 VVRAG-GAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP---VTNYNRHLTEAILWDQMPYLSKVMN 363 (398)
T ss_dssp HEEEE-EEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCC---GGGTHHHHHHHHHTTCCHHHHHHHC
T ss_pred HHhcC-CEEEEeccccccccccccccccCCcccccHHHHhhcCCEEEEeccC---cHHHHHHHHHHHHcCCCCccchhhE
Confidence 99997 99999997521 1223444444444 8888776432 336789999999999987 66677
Q ss_pred eeeeecchHHHHHHHhhCCCeeEEEEecC
Q 025257 226 THNMTLGEINEAFRYMHGGDCLRCVLKMQ 254 (255)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~k~vi~~~ 254 (255)
+++|+|+++++|++.+.+++..|+||+++
T Consensus 364 ~~~~~l~~~~~A~~~~~~~~~gKvvv~~~ 392 (398)
T 2dph_A 364 IEVITLDQAPDGYAKFDKGSPAKFVIDPH 392 (398)
T ss_dssp EEEECSTTHHHHHHHHHTTCSCEEEECTT
T ss_pred EEEEcHHHHHHHHHHHhcCCceEEEEecC
Confidence 89999999999999998776689999875
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=268.91 Aligned_cols=241 Identities=15% Similarity=0.176 Sum_probs=204.8
Q ss_pred CCCCCCccccCCccccccc---------------------------CccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 2 MNDRKSRFSINGKPIYHFM---------------------------GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~---------------------------~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
+|+++.+|++ ||+|+... ..|+|+||+++|+++++++|+++++++||+++++
T Consensus 124 vG~~V~~~~v-GDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~ 202 (447)
T 4a0s_A 124 TGIGVRRWKP-GDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLC 202 (447)
T ss_dssp ECTTCCSCCT-TCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHH
T ss_pred ECCCCCCCCC-CCEEEEecCcCcCcccccccccccccccccccccCCCCceeeeeecCHHHcEECCCCCCHHHHHHhHHH
Confidence 3678889999 99998542 1599999999999999999999999999999999
Q ss_pred hhhhhhHHHh--hcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCch---
Q 025257 55 VPTGLGAVWN--TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP--- 128 (255)
Q Consensus 55 ~~ta~~~l~~--~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~--- 128 (255)
++|||+++.. ..++++|++|||+|+ |++|++++|+++..|+ +|++++++++++++++++|++.++++.+ .+
T Consensus 203 ~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~--~~~~~ 279 (447)
T 4a0s_A 203 AGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAE--LGITD 279 (447)
T ss_dssp HHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHH--HTCCT
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeccc--ccccc
Confidence 9999999864 489999999999998 9999999999999999 9999999999999999999999887654 32
Q ss_pred ---------------HHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcE
Q 025257 129 ---------------IQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRV 192 (255)
Q Consensus 129 ---------------~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~ 192 (255)
+.+.+++.+++++|++||++|.+. ++.++++++++ |+++.+|.... ....++...++. +.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~ 356 (447)
T 4a0s_A 280 DIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVT-FGLSVIVARRG-GTVVTCGSSSG-YLHTFDNRYLWMKLKK 356 (447)
T ss_dssp TGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHHH-HHHHHHHSCTT-CEEEESCCTTC-SEEEEEHHHHHHTTCE
T ss_pred cccccccccchhhhHHHHHHHHHhCCCceEEEECCCchH-HHHHHHHHhcC-CEEEEEecCCC-cccccCHHHHHhCCCE
Confidence 367788888449999999999976 99999999997 99999998643 334455555444 889
Q ss_pred EEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecC
Q 025257 193 WKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 193 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
+.|+..... .++.++++++++|+++ +.++++||++++++|++.+.+++.. |+||.+.
T Consensus 357 i~g~~~~~~---~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~GKvvv~~~ 414 (447)
T 4a0s_A 357 IVGSHGANH---EEQQATNRLFESGAVV--PAMSAVYPLAEAAEACRVVQTSRQVGKVAVLCM 414 (447)
T ss_dssp EEECCSCCH---HHHHHHHHHHHTTSSC--CCEEEEEEGGGHHHHHHHHHTTCCSSEEEEESS
T ss_pred EEecCCCCH---HHHHHHHHHHHcCCcc--cceeEEEcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 988865433 5678999999999964 5688999999999999999888766 9998874
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=259.25 Aligned_cols=240 Identities=12% Similarity=0.145 Sum_probs=203.0
Q ss_pred CCCCCCccccCCccccccc---CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCC-----CCCE
Q 025257 2 MNDRKSRFSINGKPIYHFM---GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE-----PGSI 73 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~---~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-----~~~~ 73 (255)
+|+++.+|++ ||+|++.. .+|+|+||+++|++.++++|+++++++||+++++++|||+++.+..+++ +|++
T Consensus 96 vG~~v~~~~v-GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~ 174 (363)
T 4dvj_A 96 VGPDVTLFRP-GDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPA 174 (363)
T ss_dssp ECTTCCSCCT-TCEEEECCCTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEE
T ss_pred eCCCCCCCCC-CCEEEEccCCCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCE
Confidence 4778899999 99998653 4699999999999999999999999999999999999999998889998 8999
Q ss_pred EEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 74 VAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 74 vlI~G~-g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
|||+|+ |++|++++|+|+.+ |+ +|+++++++++.++++++|+++++|+. +++.+.+++..++++|+||||+|++
T Consensus 175 VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~~~~~lGad~vi~~~---~~~~~~v~~~~~~g~Dvvid~~g~~ 250 (363)
T 4dvj_A 175 ILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQEWVKSLGAHHVIDHS---KPLAAEVAALGLGAPAFVFSTTHTD 250 (363)
T ss_dssp EEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHHHHTTCSEEECTT---SCHHHHHHTTCSCCEEEEEECSCHH
T ss_pred EEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC---CCHHHHHHHhcCCCceEEEECCCch
Confidence 999995 99999999999985 78 999999999999999999999999987 4688888888544999999999998
Q ss_pred HHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCC-----Cc----cCcHHHHHHHHHcCCCCC
Q 025257 152 SVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF-----KS----RSQVPWLVDKYMKKEIKV 221 (255)
Q Consensus 152 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~-----~~----~~~~~~~~~~~~~~~~~~ 221 (255)
..++.++++++++ |+++.+|.. .+++...+.. ++++.++..... .+ .+.++++++++++|++++
T Consensus 251 ~~~~~~~~~l~~~-G~iv~~g~~-----~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~ 324 (363)
T 4dvj_A 251 KHAAEIADLIAPQ-GRFCLIDDP-----SAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRT 324 (363)
T ss_dssp HHHHHHHHHSCTT-CEEEECSCC-----SSCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCC
T ss_pred hhHHHHHHHhcCC-CEEEEECCC-----CccchHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeec
Confidence 6699999999997 999999652 2344555554 888887653221 01 245788999999999764
Q ss_pred CCcceeee---ecchHHHHHHHhhCCCee-EEEEecC
Q 025257 222 DEYVTHNM---TLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 222 ~~~~~~~~---~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
.+.++| +++++++|++.+.+++.. |+||++.
T Consensus 325 --~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~ 359 (363)
T 4dvj_A 325 --TLTNRLSPINAANLKQAHALVESGTARGKVVIEGF 359 (363)
T ss_dssp --CEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECS
T ss_pred --cccceecCCCHHHHHHHHHHHHhCCCceEEEEeCc
Confidence 455555 999999999999888876 9999875
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=260.08 Aligned_cols=237 Identities=16% Similarity=0.232 Sum_probs=202.5
Q ss_pred CCCCCCccccCCccccccc-----CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEE
Q 025257 2 MNDRKSRFSINGKPIYHFM-----GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 76 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~-----~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI 76 (255)
+|+++.+|++ ||+|+++. .+|+|+||+++|++.++++|+++++++||+++++++|||+++.+..++++|++|||
T Consensus 78 vG~~v~~~~v-GdrV~~~~~g~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV 156 (343)
T 3gaz_A 78 VGPEVDSFRV-GDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLI 156 (343)
T ss_dssp ECTTCCSCCT-TCEEEEECCSSTTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred ECCCCCCCCC-CCEEEEEeCCCCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEE
Confidence 3778899999 99998764 36999999999999999999999999999999999999999889999999999999
Q ss_pred EcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHH
Q 025257 77 FGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVM 154 (255)
Q Consensus 77 ~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~ 154 (255)
+|+ |++|++++|+++..|+ +|+++ .+++++++++++|++. ++ .+ .++.+.+++.+++ ++|++|||+|++. +
T Consensus 157 ~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~-i~-~~--~~~~~~~~~~~~~~g~D~vid~~g~~~-~ 229 (343)
T 3gaz_A 157 QGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP-ID-AS--REPEDYAAEHTAGQGFDLVYDTLGGPV-L 229 (343)
T ss_dssp ETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE-EE-TT--SCHHHHHHHHHTTSCEEEEEESSCTHH-H
T ss_pred ecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE-ec-cC--CCHHHHHHHHhcCCCceEEEECCCcHH-H
Confidence 995 9999999999999999 99999 7899999999999998 77 55 7888999999888 9999999999876 9
Q ss_pred HHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCC----C----ccCcHHHHHHHHHcCCCCCCCcc
Q 025257 155 RAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGF----K----SRSQVPWLVDKYMKKEIKVDEYV 225 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~ 225 (255)
+.++++++++ |+++.+|... .++...+. +++++.+++.... . ..+.++++++++++|+++ +.+
T Consensus 230 ~~~~~~l~~~-G~iv~~g~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i 301 (343)
T 3gaz_A 230 DASFSAVKRF-GHVVSCLGWG-----THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLA--PRL 301 (343)
T ss_dssp HHHHHHEEEE-EEEEESCCCS-----CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCC--CCB
T ss_pred HHHHHHHhcC-CeEEEEcccC-----ccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCcc--cCc
Confidence 9999999996 9999998753 23334443 4889988753211 0 124688999999999965 456
Q ss_pred e-eeeecchHHHHHHHhhCCC----ee-EEEEecC
Q 025257 226 T-HNMTLGEINEAFRYMHGGD----CL-RCVLKMQ 254 (255)
Q Consensus 226 ~-~~~~~~~~~~a~~~~~~~~----~~-k~vi~~~ 254 (255)
. ++||++++++|++.+.+++ .. |+|++++
T Consensus 302 ~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~ 336 (343)
T 3gaz_A 302 DPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVE 336 (343)
T ss_dssp CSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC
T ss_pred cCcEecHHHHHHHHHHHHcCCCcccccceEEEEec
Confidence 6 6999999999999998764 34 9999875
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=261.07 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=183.0
Q ss_pred CccceeeEEEEcCCceEEcCCC-CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEE
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQ-APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI 99 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~-~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~ 99 (255)
.+|+|+||+++|+++++++|++ +++++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|+
T Consensus 145 ~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi 222 (369)
T 1uuf_A 145 TLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVV 222 (369)
T ss_dssp CCCSSBSEEEEEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEE
T ss_pred CCCcccceEEEcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEE
Confidence 3599999999999999999999 9999999999999999998854 689999999999999999999999999999 899
Q ss_pred EEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCc
Q 025257 100 GIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 179 (255)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 179 (255)
+++++++++++++++|++.++|+.+ +++.+.+ . +++|+|||++|.+..++.++++++++ |+++.+|......
T Consensus 223 ~~~~~~~~~~~a~~lGa~~vi~~~~--~~~~~~~---~-~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~- 294 (369)
T 1uuf_A 223 AFTTSEAKREAAKALGADEVVNSRN--ADEMAAH---L-KSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPH- 294 (369)
T ss_dssp EEESSGGGHHHHHHHTCSEEEETTC--HHHHHTT---T-TCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC-----
T ss_pred EEeCCHHHHHHHHHcCCcEEecccc--HHHHHHh---h-cCCCEEEECCCCHHHHHHHHHHhccC-CEEEEeccCCCCc-
Confidence 9999999999999999999999876 6554433 2 47999999999875589999999997 9999999864321
Q ss_pred cccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecC
Q 025257 180 ISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 180 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
..++...++. ++++.|+.... .++++++++++++|++++. + ++||++++++|++.+.+++.. |+||+++
T Consensus 295 ~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~ 365 (369)
T 1uuf_A 295 KSPEVFNLIMKRRAIAGSMIGG---IPETQEMLDFCAEHGIVAD--I-EMIRADQINEAYERMLRGDVKYRFVIDNR 365 (369)
T ss_dssp ---CHHHHHTTTCEEEECCSCC---HHHHHHHHHHHHHHTCCCC--E-EEECGGGHHHHHHHHHTTCSSSEEEEEGG
T ss_pred cccCHHHHHhCCcEEEEeecCC---HHHHHHHHHHHHhCCCCcc--e-EEEcHHHHHHHHHHHHcCCCceEEEEecC
Confidence 1445545444 99999886542 3578999999999997653 4 579999999999999887755 9999875
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=264.68 Aligned_cols=240 Identities=13% Similarity=0.106 Sum_probs=199.8
Q ss_pred CCCC-CccccCCccccccc---CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCC-CEEEEE
Q 025257 3 NDRK-SRFSINGKPIYHFM---GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG-SIVAVF 77 (255)
Q Consensus 3 g~~~-~~~~~~g~~v~~~~---~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~vlI~ 77 (255)
|+++ .+|++ ||+|++.. .+|+|+||+++|++.++++|+++++++||++++.++|||++ .+..+ +++ ++|||+
T Consensus 95 G~~v~~~~~v-GdrV~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~-~~~~~-~~g~~~vli~ 171 (349)
T 3pi7_A 95 GDEPYAKSLV-GKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAM-FDIVK-QEGEKAFVMT 171 (349)
T ss_dssp CSSHHHHHHT-TCEEEEECTTSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHH-HHHHH-HHCCSEEEES
T ss_pred CCCccCCCCC-CCEEEEeccCCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHH-HHHHh-hCCCCEEEEe
Confidence 6677 88999 99998664 57999999999999999999999999999999999999964 46666 666 789999
Q ss_pred cC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHH
Q 025257 78 GL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMR 155 (255)
Q Consensus 78 G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~ 155 (255)
|+ |++|++++|+|+..|+ +|++++++++++++++++|+++++|+++ +++.+.+++.+++ ++|++|||+|.+. ++
T Consensus 172 gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~v~~~~~~~g~D~vid~~g~~~-~~ 247 (349)
T 3pi7_A 172 AGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEKA--PDFEATLREVMKAEQPRIFLDAVTGPL-AS 247 (349)
T ss_dssp STTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHTCSEEEETTS--TTHHHHHHHHHHHHCCCEEEESSCHHH-HH
T ss_pred CCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCc--HHHHHHHHHHhcCCCCcEEEECCCChh-HH
Confidence 65 9999999999999999 9999999999999999999999999988 8999999999987 9999999999988 79
Q ss_pred HHHHHhccCCceEEEEccCCCCCccccCc-hhhc-cCcEEEEeeeCCCCc------cCcHHHHHHHHHcCCCCCCCccee
Q 025257 156 AALECCHKGWGTSVIVGVAASGQEISTRP-FQLV-TGRVWKGTAFGGFKS------RSQVPWLVDKYMKKEIKVDEYVTH 227 (255)
Q Consensus 156 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~-~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 227 (255)
.++++++++ |+++.+|.... ....++. ..++ +++++.|++...+.. .+.++++++++++|+++ +.+++
T Consensus 248 ~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~ 323 (349)
T 3pi7_A 248 AIFNAMPKR-ARWIIYGRLDP-DATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWS--TDVTA 323 (349)
T ss_dssp HHHHHSCTT-CEEEECCCSCC-SCCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSCC--C-CCE
T ss_pred HHHhhhcCC-CEEEEEeccCC-CCCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCcc--cccce
Confidence 999999997 99999997543 2344555 4444 499999987543211 24577888889999964 45788
Q ss_pred eeecchHHHHHHHhhCCCeeEEEEec
Q 025257 228 NMTLGEINEAFRYMHGGDCLRCVLKM 253 (255)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~k~vi~~ 253 (255)
+||++++++|++.+.++...|+||++
T Consensus 324 ~~~l~~~~~A~~~~~~~~~gKvvl~p 349 (349)
T 3pi7_A 324 VVPLAEAIAWVPAELTKPNGKVFIRP 349 (349)
T ss_dssp EEEHHHHHHHHHHHHTSSSSCEEEEC
T ss_pred EEcHHHHHHHHHHHhCCCCceEEEeC
Confidence 99999999999966665556999875
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=262.27 Aligned_cols=230 Identities=13% Similarity=0.181 Sum_probs=180.0
Q ss_pred CCCCCCccccCCcccccccC---ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEc
Q 025257 2 MNDRKSRFSINGKPIYHFMG---TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 78 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~---~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G 78 (255)
.|+++.+|++ ||+|++..+ +|+|+||+++|+++++++|+++++++||+++++++|||+++ +..++++|++|||+|
T Consensus 73 vG~~v~~~~v-GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G 150 (315)
T 3goh_A 73 VGAKVDSKML-GRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVG 150 (315)
T ss_dssp ECTTSCGGGT-TCEEEEECCTTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEEC
T ss_pred eCCCCCCCCC-CCEEEEeCCCCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEEC
Confidence 3778899999 999997653 79999999999999999999999999999999999999998 999999999999999
Q ss_pred CChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHH
Q 025257 79 LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAAL 158 (255)
Q Consensus 79 ~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~ 158 (255)
+|++|++++|+|+.+|+ +|++++ +++++++++++|++++++ + .+.+ ++++|++|||+|++. +..++
T Consensus 151 aG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~--d-----~~~v----~~g~Dvv~d~~g~~~-~~~~~ 216 (315)
T 3goh_A 151 FGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR--E-----PSQV----TQKYFAIFDAVNSQN-AAALV 216 (315)
T ss_dssp CSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES--S-----GGGC----CSCEEEEECC--------TTG
T ss_pred CCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc--C-----HHHh----CCCccEEEECCCchh-HHHHH
Confidence 99999999999999999 999999 999999999999999884 1 1222 348999999999988 68899
Q ss_pred HHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCC---c-------cCcHHHHHHHHHcCCCCCCCcceee
Q 025257 159 ECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK---S-------RSQVPWLVDKYMKKEIKVDEYVTHN 228 (255)
Q Consensus 159 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (255)
++++++ |+++.+|...... ..+ .+.+.+.+....+.... . .+.++++++++++|+++ +.++++
T Consensus 217 ~~l~~~-G~~v~~g~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~ 289 (315)
T 3goh_A 217 PSLKAN-GHIICIQDRIPAP--IDP--AFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKME--IAAPDI 289 (315)
T ss_dssp GGEEEE-EEEEEECCC--------------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSSC--CCCCEE
T ss_pred HHhcCC-CEEEEEeCCCCcc--ccc--hhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHHCCCcc--cccceE
Confidence 999997 9999997643211 111 12224444444332210 1 12467899999999964 567799
Q ss_pred eecchHHHHHHHhhCCCeeEEEEecCC
Q 025257 229 MTLGEINEAFRYMHGGDCLRCVLKMQD 255 (255)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~k~vi~~~~ 255 (255)
||++++++|++.+. ....|+|+++++
T Consensus 290 ~~l~~~~~A~~~~~-~~~gKvvi~~~~ 315 (315)
T 3goh_A 290 FRFEQMIEALDHSE-QTKLKTVLTLNE 315 (315)
T ss_dssp EEGGGHHHHHHHHH-HHCCCEEEESCC
T ss_pred ecHHHHHHHHHHHH-hcCCcEEEEecC
Confidence 99999999999998 444599999875
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=252.99 Aligned_cols=224 Identities=25% Similarity=0.344 Sum_probs=191.9
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEE
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVI 99 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~ 99 (255)
.+|+|+||+++|+++++++|+++++++||+++++++|||+++. ..+++++++|||+|+ |++|++++|+++..|+ +|+
T Consensus 121 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~ 198 (347)
T 2hcy_A 121 HDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALK-SANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVL 198 (347)
T ss_dssp BCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHHHHHHH-TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEE
T ss_pred CCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEE
Confidence 3699999999999999999999999999999999999999874 458999999999998 9999999999999999 999
Q ss_pred EEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCc
Q 025257 100 GIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 179 (255)
Q Consensus 100 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 179 (255)
++++++++.+.++++|++.++|+.+ ++++.+.+++.+++++|+++|++|.+..++.++++++++ |+++.+|.... ..
T Consensus 199 ~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~ 275 (347)
T 2hcy_A 199 GIDGGEGKEELFRSIGGEVFIDFTK-EKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAG-AK 275 (347)
T ss_dssp EEECSTTHHHHHHHTTCCEEEETTT-CSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEE-EEEEECCCCTT-CE
T ss_pred EEcCCHHHHHHHHHcCCceEEecCc-cHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEeCCCC-CC
Confidence 9999999999999999998888762 167888888776558999999999866699999999997 99999998642 33
Q ss_pred cccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 180 ISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 180 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
.+++...++. ++++.|+.... .++++++++++++|++++. .++||++++++|++.+.+++.. |+||++++
T Consensus 276 ~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 347 (347)
T 2hcy_A 276 CCSDVFNQVVKSISIVGSYVGN---RADTREALDFFARGLVKSP---IKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK 347 (347)
T ss_dssp EEEEHHHHHHTTCEEEECCCCC---HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEESCC
T ss_pred CCCCHHHHhhCCcEEEEccCCC---HHHHHHHHHHHHhCCCccc---eEEEcHHHHHHHHHHHHcCCcceeEEEecCC
Confidence 4555555544 99999876432 3679999999999997653 4689999999999999887655 99999864
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=261.19 Aligned_cols=217 Identities=22% Similarity=0.275 Sum_probs=185.9
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEE
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 100 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~ 100 (255)
.+|+|+||+++|+++++++|+++++++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|++
T Consensus 131 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~ 208 (360)
T 1piw_A 131 SQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYV 208 (360)
T ss_dssp CCCSSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEE
T ss_pred CCCcceeEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEE
Confidence 35999999999999999999999999999999999999999855 899999999999999999999999999999 8999
Q ss_pred EcCCcchHHHHHhcCCcEEeCCCCCCc-hHHHHHHhhcCCCccEEEecCCc--HHHHHHHHHHhccCCceEEEEccCCCC
Q 025257 101 IDIDPKKFDRAKNFGVTEFVNPKDHDK-PIQQVLVDLTDGGVDYSFECIGN--VSVMRAALECCHKGWGTSVIVGVAASG 177 (255)
Q Consensus 101 ~~~~~~~~~~~~~~g~~~vi~~~~~~~-~~~~~i~~~~~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~~~~ 177 (255)
++++++++++++++|+++++|+.+ . ++.+.+. +++|+|||++|. +..++.++++++++ |+++.+|....
T Consensus 209 ~~~~~~~~~~~~~lGa~~v~~~~~--~~~~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~-G~iv~~g~~~~- 280 (360)
T 1piw_A 209 ISRSSRKREDAMKMGADHYIATLE--EGDWGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ- 280 (360)
T ss_dssp EESSSTTHHHHHHHTCSEEEEGGG--TSCHHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS-
T ss_pred EcCCHHHHHHHHHcCCCEEEcCcC--chHHHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhcCC-CEEEEecCCCC-
Confidence 999999999999999999998876 5 6665554 479999999998 54488999999997 99999998643
Q ss_pred CccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecch--HHHHHHHhhCCCee-EEEEec
Q 025257 178 QEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGE--INEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 178 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~-k~vi~~ 253 (255)
. ..++...++. ++++.|+.... .++++++++++++|++++. + ++||+++ +++|++.+.+++.. |+||++
T Consensus 281 ~-~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~ 353 (360)
T 1piw_A 281 H-EMLSLKPYGLKAVSISYSALGS---IKELNQLLKLVSEKDIKIW--V-ETLPVGEAGVHEAFERMEKGDVRYRFTLVG 353 (360)
T ss_dssp S-CCEEECGGGCBSCEEEECCCCC---HHHHHHHHHHHHHTTCCCC--E-EEEESSHHHHHHHHHHHHHTCCSSEEEEEC
T ss_pred c-cccCHHHHHhCCeEEEEEecCC---HHHHHHHHHHHHhCCCcce--E-EEEeccHhHHHHHHHHHHCCCCceEEEEec
Confidence 1 1344444444 89998876432 3679999999999997543 5 8999999 99999999877755 999987
Q ss_pred C
Q 025257 254 Q 254 (255)
Q Consensus 254 ~ 254 (255)
+
T Consensus 354 ~ 354 (360)
T 1piw_A 354 Y 354 (360)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=259.29 Aligned_cols=242 Identities=19% Similarity=0.244 Sum_probs=197.5
Q ss_pred CCCCCCccccCCccccccc-CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-
Q 025257 2 MNDRKSRFSINGKPIYHFM-GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL- 79 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~-~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~- 79 (255)
+|+++.+|++ ||+|++.. ++|+|+||+++|+++++++|+++++++||+++++++|||+++.+..++++|++|||+|+
T Consensus 99 vG~~v~~~~v-GdrV~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~ 177 (357)
T 1zsy_A 99 VGSNVTGLKP-GDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASN 177 (357)
T ss_dssp ECTTCCSCCT-TCEEEESSSCSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTT
T ss_pred eCCCCCCCCC-CCEEEEcCCCCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 3678889999 99998764 46999999999999999999999999999999999999999888899999999999998
Q ss_pred ChHHHHHHHHHHHcCCCeEEEEcCCcc----hHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC--CccEEEecCCcHHH
Q 025257 80 GTVGLAVAEGAKAAGASRVIGIDIDPK----KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG--GVDYSFECIGNVSV 153 (255)
Q Consensus 80 g~vG~~a~~l~~~~g~~~v~~~~~~~~----~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~--~~d~v~d~~g~~~~ 153 (255)
|++|++++|+|+.+|+ ++++++++.+ ++++++++|+++++|+.+ ...+.+.+.+++ ++|+||||+|++.
T Consensus 178 G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~~~~~~~~~~~Dvvid~~g~~~- 252 (357)
T 1zsy_A 178 SGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLKSLGAEHVITEEE---LRRPEMKNFFKDMPQPRLALNCVGGKS- 252 (357)
T ss_dssp SHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHHHTTCSEEEEHHH---HHSGGGGGTTSSSCCCSEEEESSCHHH-
T ss_pred CHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHHhcCCcEEEecCc---chHHHHHHHHhCCCCceEEEECCCcHH-
Confidence 9999999999999999 8888876543 467889999999997642 122345566554 5999999999887
Q ss_pred HHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCC-------ccCcHHHHHHHHHcCCCCCCCcc
Q 025257 154 MRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFK-------SRSQVPWLVDKYMKKEIKVDEYV 225 (255)
Q Consensus 154 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 225 (255)
...++++++++ |+++.+|.... ....++...+. +++++.|++...+. ..+.++++++++++|++++. +
T Consensus 253 ~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~ 328 (357)
T 1zsy_A 253 STELLRQLARG-GTMVTYGGMAK-QPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP--A 328 (357)
T ss_dssp HHHHHTTSCTT-CEEEECCCCTT-CCBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCC--C
T ss_pred HHHHHHhhCCC-CEEEEEecCCC-CCCCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCc--c
Confidence 67799999997 99999986532 33455555554 49999998654221 12357889999999997654 4
Q ss_pred eeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 226 THNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
.++||++++++|++.+.+++.. |+||++
T Consensus 329 ~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 357 (357)
T 1zsy_A 329 CSQVPLQDYQSALEASMKPFISSKQILTM 357 (357)
T ss_dssp EEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred ceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence 5899999999999999877755 999874
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=262.70 Aligned_cols=225 Identities=22% Similarity=0.264 Sum_probs=187.2
Q ss_pred ccceeeEEEEcCC--ceEEcCCCCCccc----ccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC
Q 025257 22 TSTFSQYTVVHDV--SVAKIDPQAPLDK----VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 95 (255)
Q Consensus 22 ~g~~ae~~~v~~~--~~~~~p~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~ 95 (255)
.|+|+||+++|++ +++++|+++++++ +|+++.+++|||+++ ...++++|++|||+|+|++|++++|+|+.+|+
T Consensus 132 ~G~~aey~~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga 210 (398)
T 1kol_A 132 TGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGA 210 (398)
T ss_dssp CCCSBSEEEESSHHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred CceeeeEEEecchhCeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 4899999999987 8999999999887 788888999999998 47899999999999999999999999999999
Q ss_pred CeEEEEcCCcchHHHHHhcCCcEEeCCCCCCch-HHHHHHhhcCC-CccEEEecCCcH---------------HHHHHHH
Q 025257 96 SRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP-IQQVLVDLTDG-GVDYSFECIGNV---------------SVMRAAL 158 (255)
Q Consensus 96 ~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~~~~i~~~~~~-~~d~v~d~~g~~---------------~~~~~~~ 158 (255)
++|++++++++++++++++|++ ++++.+ .+ +.+.+++.+++ ++|+|||++|.+ ..++.++
T Consensus 211 ~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~--~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~ 287 (398)
T 1kol_A 211 AVVIVGDLNPARLAHAKAQGFE-IADLSL--DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLM 287 (398)
T ss_dssp SEEEEEESCHHHHHHHHHTTCE-EEETTS--SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHcCCc-EEccCC--cchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHH
Confidence 6799999999999999999997 777765 44 88889998887 899999999976 2489999
Q ss_pred HHhccCCceEEEEccCCCCC-----------ccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCC-CCCcc
Q 025257 159 ECCHKGWGTSVIVGVAASGQ-----------EISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK-VDEYV 225 (255)
Q Consensus 159 ~~l~~~~G~~v~~g~~~~~~-----------~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 225 (255)
++++++ |+++.+|...... ..+++...++. ++++.++.. ...++++++++++.+|+++ +++.+
T Consensus 288 ~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~l~~~g~l~~~~~~i 363 (398)
T 1kol_A 288 QVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT---PVMKYNRALMQAIMWDRINIAEVVG 363 (398)
T ss_dssp HHEEEE-EEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSC---CHHHHHHHHHHHHHTTSCCHHHHHT
T ss_pred HHHhcC-CEEEEeccccCCcccccccccccccccccHHHHhhcccEEEeccc---ChHHHHHHHHHHHHcCCCCCcccee
Confidence 999997 9999999752111 12334433443 888876532 1235678899999999987 34567
Q ss_pred eeeeecchHHHHHHHhhCCCeeEEEEecC
Q 025257 226 THNMTLGEINEAFRYMHGGDCLRCVLKMQ 254 (255)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~k~vi~~~ 254 (255)
+++|+++++++|++.+.+++..|+||+++
T Consensus 364 ~~~~~l~~~~~A~~~~~~~~~gKvvi~~~ 392 (398)
T 1kol_A 364 VQVISLDDAPRGYGEFDAGVPKKFVIDPH 392 (398)
T ss_dssp EEEECGGGHHHHHHHHHHTCSCEEEECTT
T ss_pred EEEEcHHHHHHHHHHHhCCCceEEEEEeC
Confidence 78999999999999997766589999875
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=258.27 Aligned_cols=212 Identities=25% Similarity=0.349 Sum_probs=181.6
Q ss_pred cceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc
Q 025257 23 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102 (255)
Q Consensus 23 g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~ 102 (255)
|+|+||+++|+++++++|+++++++||++++++.|||+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++
T Consensus 130 G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~ 207 (348)
T 3two_A 130 GGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFA 207 (348)
T ss_dssp CSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred ccccceEEechhhEEECCCCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEe
Confidence 9999999999999999999999999999999999999987 45699999999999999999999999999999 999999
Q ss_pred CCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccc-
Q 025257 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS- 181 (255)
Q Consensus 103 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~- 181 (255)
++++++++++++|+++++ ... +.+ . .++|+|||++|.+..++.++++++++ |+++.+|.... ...+
T Consensus 208 ~~~~~~~~~~~lGa~~v~-~~~--~~~----~----~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~ 274 (348)
T 3two_A 208 RNEHKKQDALSMGVKHFY-TDP--KQC----K----EELDFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPV-EVAPV 274 (348)
T ss_dssp SSSTTHHHHHHTTCSEEE-SSG--GGC----C----SCEEEEEECCCSCCCHHHHHTTEEEE-EEEEECCCCCG-GGCCE
T ss_pred CCHHHHHHHHhcCCCeec-CCH--HHH----h----cCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCCCC-CCccc
Confidence 999999999999999988 322 211 1 17999999999984499999999997 99999998641 2223
Q ss_pred cCchhhc--cCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 182 TRPFQLV--TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 182 ~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
++...++ +++++.|+..+.. ++++++++++++|++++. + ++||++++++|++.+.+++.. |+||++++
T Consensus 275 ~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvVi~~~~ 345 (348)
T 3two_A 275 LSVFDFIHLGNRKVYGSLIGGI---KETQEMVDFSIKHNIYPE--I-DLILGKDIDTAYHNLTHGKAKFRYVIDMKK 345 (348)
T ss_dssp EEHHHHHHTCSCEEEECCSCCH---HHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCCSEEEEEGGG
T ss_pred CCHHHHHhhCCeEEEEEecCCH---HHHHHHHHHHHhCCCCce--E-EEEEHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 4444444 4999999875533 679999999999997763 3 799999999999999988865 99999863
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=260.12 Aligned_cols=245 Identities=12% Similarity=0.134 Sum_probs=201.4
Q ss_pred CCCCCCccccCCccccccc-CccceeeEEEEcCCceEEcCC-----------CCCcccccccccchhhhhhHHHhhcCCC
Q 025257 2 MNDRKSRFSINGKPIYHFM-GTSTFSQYTVVHDVSVAKIDP-----------QAPLDKVCLLGCGVPTGLGAVWNTAKVE 69 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~-~~g~~ae~~~v~~~~~~~~p~-----------~~~~~~aa~~~~~~~ta~~~l~~~~~~~ 69 (255)
+|+++.+|++ ||+|++.. ..|+|+||+++|+++++++|+ ++++++||+++++++|||+++.+..+++
T Consensus 87 vG~~v~~~~v-GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~ 165 (364)
T 1gu7_A 87 VGSNVSSLEA-GDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLT 165 (364)
T ss_dssp ECTTCCSCCT-TCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCC
T ss_pred eCCCCCcCCC-CCEEEecCCCCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccC
Confidence 3678889999 99998764 469999999999999999998 8999999999999999999987778999
Q ss_pred CC-CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch----HHHHHhcCCcEEeCCCCC-CchHHHHHHhhc--CC-
Q 025257 70 PG-SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK----FDRAKNFGVTEFVNPKDH-DKPIQQVLVDLT--DG- 139 (255)
Q Consensus 70 ~~-~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~----~~~~~~~g~~~vi~~~~~-~~~~~~~i~~~~--~~- 139 (255)
+| ++|||+|+ |++|++++|+|+.+|+ +|+++++++++ +++++++|+++++|+++. ..++.+.+++.+ ++
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~ 244 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGG 244 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCC
Confidence 99 99999998 9999999999999999 99999876665 677899999999987520 046778888887 55
Q ss_pred CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCc------cCcHHHHHH
Q 025257 140 GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKS------RSQVPWLVD 212 (255)
Q Consensus 140 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~------~~~~~~~~~ 212 (255)
++|+||||+|++. ...++++++++ |+++.+|.... ...+++...++ +++++.|++...+.. .+.++++++
T Consensus 245 g~Dvvid~~G~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 321 (364)
T 1gu7_A 245 EAKLALNCVGGKS-STGIARKLNNN-GLMLTYGGMSF-QPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIA 321 (364)
T ss_dssp CEEEEEESSCHHH-HHHHHHTSCTT-CEEEECCCCSS-CCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHH
T ss_pred CceEEEECCCchh-HHHHHHHhccC-CEEEEecCCCC-CCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHH
Confidence 8999999999988 55889999997 99999998642 33455555554 489999886543210 246889999
Q ss_pred HHHcCCCCCCCcceeeeecc---hHHHHHHHhhCCCee-EEEEec
Q 025257 213 KYMKKEIKVDEYVTHNMTLG---EINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++|++++... .+|+++ ++++|++.+.+++.. |+||++
T Consensus 322 l~~~g~l~~~~~--~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 364 (364)
T 1gu7_A 322 WYEEGKLTDAKS--IETLYDGTKPLHELYQDGVANSKDGKQLITY 364 (364)
T ss_dssp HHHHTCCCCCCC--EEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred HHHcCCcccccc--eEEecCchhhHHHHHHHHHhCCCCceEEEeC
Confidence 999999877644 466664 999999998877655 999875
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=256.35 Aligned_cols=219 Identities=22% Similarity=0.337 Sum_probs=183.9
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCC-CCCEEEEEcCChHHHHHHHHHHHcCCCeEE
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVI 99 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~ 99 (255)
.+|+|+||+++|+++++++|+++++++||++++++.|||+++ ...+++ +|++|||+|+|++|++++|+|+.+|+ +|+
T Consensus 131 ~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l-~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi 208 (357)
T 2cf5_A 131 TQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPL-SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVT 208 (357)
T ss_dssp CCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGTHHHHHHHHH-HHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEE
T ss_pred CCCccccEEEechhhEEECcCCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEE
Confidence 469999999999999999999999999999999999999987 457888 99999999999999999999999999 999
Q ss_pred EEcCCcchHHHHH-hcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCC
Q 025257 100 GIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 178 (255)
Q Consensus 100 ~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~ 178 (255)
++++++++++.++ ++|+++++++++ . +.+++.++ ++|+|||++|.+..++.++++++++ |+++.+|......
T Consensus 209 ~~~~~~~~~~~~~~~lGa~~vi~~~~--~---~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~ 281 (357)
T 2cf5_A 209 VISSSNKKREEALQDLGADDYVIGSD--Q---AKMSELAD-SLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGVINNPL 281 (357)
T ss_dssp EEESSTTHHHHHHTTSCCSCEEETTC--H---HHHHHSTT-TEEEEEECCCSCCCSHHHHTTEEEE-EEEEECSCCSSCC
T ss_pred EEeCChHHHHHHHHHcCCceeecccc--H---HHHHHhcC-CCCEEEECCCChHHHHHHHHHhccC-CEEEEeCCCCCCc
Confidence 9999999999987 999999998875 4 34555543 7999999999874489999999997 9999999854321
Q ss_pred ccccCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 179 EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 179 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
. .++...+.+++++.|+.... .++++++++++++|++++. + ++||++++++|++.+.+++.. |+||++++
T Consensus 282 ~-~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 352 (357)
T 2cf5_A 282 Q-FLTPLLMLGRKVITGSFIGS---MKETEEMLEFCKEKGLSSI--I-EVVKMDYVNTAFERLEKNDVRYRFVVDVEG 352 (357)
T ss_dssp C-CCHHHHHHHTCEEEECCSCC---HHHHHHHHHHHHHTTCCCC--E-EEEEGGGHHHHHHHHHTTCSSSEEEEETTS
T ss_pred c-ccCHHHHhCccEEEEEccCC---HHHHHHHHHHHHcCCCCCc--e-EEEeHHHHHHHHHHHHCCCCceEEEEeCCc
Confidence 1 13333233499999886532 3578999999999997653 4 699999999999999887765 99998753
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=254.64 Aligned_cols=233 Identities=17% Similarity=0.239 Sum_probs=196.1
Q ss_pred CCCCCCccccCCccccccc----CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 2 MNDRKSRFSINGKPIYHFM----GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~----~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
+|+++.+|++ ||+|+++. .+|+|+||++++++.++++|+++++++||+++++++|||+++ +..++++|++|||+
T Consensus 82 vG~~v~~~~~-GdrV~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~ 159 (321)
T 3tqh_A 82 LGSDVNNVNI-GDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIH 159 (321)
T ss_dssp ECTTCCSCCT-TCEEEEECSTTTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEES
T ss_pred eCCCCCCCCC-CCEEEEccCCCCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEE
Confidence 4778899999 99998764 359999999999999999999999999999999999999998 88999999999999
Q ss_pred c-CChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCch-HHHHHHhhcCCCccEEEecCCcHHHHH
Q 025257 78 G-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP-IQQVLVDLTDGGVDYSFECIGNVSVMR 155 (255)
Q Consensus 78 G-~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~~~~i~~~~~~~~d~v~d~~g~~~~~~ 155 (255)
| +|++|++++|+|+.+|+ +|++++ +++++++++++|+++++|+++ .+ +.+.+ .++|++|||+|++. ++
T Consensus 160 Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~lGa~~~i~~~~--~~~~~~~~-----~g~D~v~d~~g~~~-~~ 229 (321)
T 3tqh_A 160 AGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKALGAEQCINYHE--EDFLLAIS-----TPVDAVIDLVGGDV-GI 229 (321)
T ss_dssp STTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHHTCSEEEETTT--SCHHHHCC-----SCEEEEEESSCHHH-HH
T ss_pred cCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHcCCCEEEeCCC--cchhhhhc-----cCCCEEEECCCcHH-HH
Confidence 8 59999999999999999 999998 566789999999999999887 66 54433 37999999999988 69
Q ss_pred HHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHH
Q 025257 156 AALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEIN 235 (255)
Q Consensus 156 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (255)
.++++++++ |+++.+|..... ..+ .....+++++.++... ...++++++++++++|++++ .+.++||+++++
T Consensus 230 ~~~~~l~~~-G~iv~~g~~~~~--~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~l~~--~i~~~~~l~~~~ 301 (321)
T 3tqh_A 230 QSIDCLKET-GCIVSVPTITAG--RVI-EVAKQKHRRAFGLLKQ--FNIEELHYLGKLVSEDKLRI--EISRIFQLSEAV 301 (321)
T ss_dssp HHGGGEEEE-EEEEECCSTTHH--HHH-HHHHHTTCEEECCCCC--CCHHHHHHHHHHHHTTSSCC--CEEEEECGGGHH
T ss_pred HHHHhccCC-CEEEEeCCCCch--hhh-hhhhhcceEEEEEecC--CCHHHHHHHHHHHHCCCccc--ccccEEcHHHHH
Confidence 999999997 999999864321 111 1122348888775422 23467999999999999765 578999999999
Q ss_pred HHHHHhhCCCee-EEEEecC
Q 025257 236 EAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 236 ~a~~~~~~~~~~-k~vi~~~ 254 (255)
+|++.+.+++.. |+||++.
T Consensus 302 ~A~~~~~~~~~~gKvvl~~~ 321 (321)
T 3tqh_A 302 TAHELLETGHVRGKLVFKVR 321 (321)
T ss_dssp HHHHHHHTTCCCSEEEEECC
T ss_pred HHHHHHHcCCCCceEEEEeC
Confidence 999999988876 9999864
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=251.79 Aligned_cols=237 Identities=22% Similarity=0.274 Sum_probs=202.9
Q ss_pred CCCCCccccCCccccccc---------------------------CccceeeEEEEcC-CceEEcCCCCCcccccccccc
Q 025257 3 NDRKSRFSINGKPIYHFM---------------------------GTSTFSQYTVVHD-VSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~---------------------------~~g~~ae~~~v~~-~~~~~~p~~~~~~~aa~~~~~ 54 (255)
|+++.+|++ ||+|++.. .+|+|+||+++|+ ++++++ +++++++||+++++
T Consensus 78 G~~v~~~~v-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~ 155 (347)
T 1jvb_A 78 GDEVVGYSK-GDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCS 155 (347)
T ss_dssp CTTCCSCCT-TCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTH
T ss_pred CCCCCCCCC-CCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccchhh
Confidence 567777888 88886432 3599999999999 999999 99999999999999
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHH
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQV 132 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~ 132 (255)
+.|||+++ +..+++++++|||+|+ |++|++++|+++.. |+ +|+++++++++.+.++++|++.++|+.+ .++.+.
T Consensus 156 ~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~ 231 (347)
T 1jvb_A 156 GITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGADYVINASM--QDPLAE 231 (347)
T ss_dssp HHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHH
T ss_pred HHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhCCCEEecCCC--ccHHHH
Confidence 99999988 5589999999999998 59999999999999 99 9999999999999999999999999887 788888
Q ss_pred HHhhcC-CCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCcHHHH
Q 025257 133 LVDLTD-GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWL 210 (255)
Q Consensus 133 i~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~ 210 (255)
+.+.+. +++|++||++|.+..++.++++++++ |+++.+|..... . +++...++. ++++.|+.... .++++++
T Consensus 232 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~-~-~~~~~~~~~~~~~i~g~~~~~---~~~~~~~ 305 (347)
T 1jvb_A 232 IRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGAD-L-HYHAPLITLSEIQFVGSLVGN---QSDFLGI 305 (347)
T ss_dssp HHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCCC-C-CCCHHHHHHHTCEEEECCSCC---HHHHHHH
T ss_pred HHHHhcCCCceEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCC-C-CCCHHHHHhCceEEEEEeccC---HHHHHHH
Confidence 888876 48999999999986699999999997 999999986422 2 555555444 99999876432 3679999
Q ss_pred HHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 211 VDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++++|+++ +.++++||++++++|++.+.+++.. |+||++
T Consensus 306 ~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 347 (347)
T 1jvb_A 306 MRLAEAGKVK--PMITKTMKLEEANEAIDNLENFKAIGRQVLIP 347 (347)
T ss_dssp HHHHHTTSSC--CCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHHcCCCC--ceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence 9999999964 5577899999999999999888765 999874
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=262.31 Aligned_cols=218 Identities=14% Similarity=0.204 Sum_probs=186.3
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCC------CEEEEEcCChHHHHH-HHHH-HHc
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG------SIVAVFGLGTVGLAV-AEGA-KAA 93 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~------~~vlI~G~g~vG~~a-~~l~-~~~ 93 (255)
+|+|+||+++|+++++++|++++ ++| +++.+++|||+++ +..++++| ++|||+|+|++|+++ +|+| +.+
T Consensus 121 ~G~~aey~~v~~~~~~~iP~~~~-~~a-al~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~ 197 (357)
T 2b5w_A 121 HGYMSEFFTSPEKYLVRIPRSQA-ELG-FLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK 197 (357)
T ss_dssp CCSCBSEEEEEGGGEEECCGGGS-TTG-GGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT
T ss_pred CcceeeEEEEchHHeEECCCCcc-hhh-hhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc
Confidence 59999999999999999999999 654 5677999999998 77889999 999999999999999 9999 999
Q ss_pred CCCeEEEEcCCcc---hHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEE
Q 025257 94 GASRVIGIDIDPK---KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVI 170 (255)
Q Consensus 94 g~~~v~~~~~~~~---~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~ 170 (255)
|+++|++++++++ ++++++++|++++ |+++ +++.+ +++. ++++|+|||++|.+..++.++++++++ |+++.
T Consensus 198 Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~--~~~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~ 271 (357)
T 2b5w_A 198 GYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQ--TPVED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPN-GVGAL 271 (357)
T ss_dssp CCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTT--SCGGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEE-EEEEE
T ss_pred CCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCc--cCHHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcC-CEEEE
Confidence 9934999999999 9999999999998 8886 67777 7777 458999999999986699999999997 99999
Q ss_pred EccCCCCCccccCchhh-----ccCcEEEEeeeCCCCccCcHHHHHHHHHcC--CCCCCCcceeeeecchHHHHHHHhhC
Q 025257 171 VGVAASGQEISTRPFQL-----VTGRVWKGTAFGGFKSRSQVPWLVDKYMKK--EIKVDEYVTHNMTLGEINEAFRYMHG 243 (255)
Q Consensus 171 ~g~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~ 243 (255)
+|.... ...+++...+ .+++++.|+.... .++++++++++++| ++ +.+.++++||++++++|++.+
T Consensus 272 ~g~~~~-~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~~~~-~~~~i~~~~~l~~~~~A~~~~-- 344 (357)
T 2b5w_A 272 LGVPSD-WAFEVDAGAFHREMVLHNKALVGSVNSH---VEHFEAATVTFTKLPKWF-LEDLVTGVHPLSEFEAAFDDD-- 344 (357)
T ss_dssp CCCCCC-CCCCCCHHHHHHHHHHTTCEEEECCCCC---HHHHHHHHHHHHHSCHHH-HHHHEEEEEEGGGGGGGGCCS--
T ss_pred EeCCCC-CCceecHHHHhHHHHhCCeEEEEeccCC---HHHHHHHHHHHHhCchhh-hhhhcceeecHHHHHHHHHHh--
Confidence 998652 3345565555 4499999876542 36799999999999 86 566788899999999999988
Q ss_pred CCeeEEEEecCC
Q 025257 244 GDCLRCVLKMQD 255 (255)
Q Consensus 244 ~~~~k~vi~~~~ 255 (255)
+...|+||++++
T Consensus 345 ~~~gKvvi~~~~ 356 (357)
T 2b5w_A 345 DTTIKTAIEFST 356 (357)
T ss_dssp TTCCEEEEECCC
T ss_pred CCCceEEEEecC
Confidence 445699999864
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=253.43 Aligned_cols=217 Identities=23% Similarity=0.334 Sum_probs=169.7
Q ss_pred CccceeeEEEEc-CCceEEcCCCCCcccccccccchhhhhhHHHhh----cCCCCCCEEEEEcCChHHHHHHHHHHHc--
Q 025257 21 GTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT----AKVEPGSIVAVFGLGTVGLAVAEGAKAA-- 93 (255)
Q Consensus 21 ~~g~~ae~~~v~-~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~----~~~~~~~~vlI~G~g~vG~~a~~l~~~~-- 93 (255)
.+|+|+||+++| +++++++ +++++++||++++++.|||+++... .++ +|++|||+|+|++|++++|+|+.+
T Consensus 118 ~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~ 195 (344)
T 2h6e_A 118 TNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMK 195 (344)
T ss_dssp BCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCT
T ss_pred cCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcC
Confidence 469999999999 9999999 9999999999999999999998654 288 999999999999999999999999
Q ss_pred CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEc
Q 025257 94 GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 94 g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
|+ +|++++++++++++++++|+++++|+++ . .+.+.+.+++ ++|+|||++|.+..++.++++++++ |+++.+|
T Consensus 196 Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~--~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g 269 (344)
T 2h6e_A 196 NI-TIVGISRSKKHRDFALELGADYVSEMKD--A--ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVG 269 (344)
T ss_dssp TC-EEEEECSCHHHHHHHHHHTCSEEECHHH--H--HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECC
T ss_pred CC-EEEEEeCCHHHHHHHHHhCCCEEecccc--c--hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcC-CEEEEeC
Confidence 99 9999999999999999999999998652 1 2234455556 8999999999986699999999997 9999999
Q ss_pred cCCCCCccccCchhhc-cCcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEE
Q 025257 173 VAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCV 250 (255)
Q Consensus 173 ~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~v 250 (255)
.... ..+++...++ +++++.|+.... .++++++++++++|++++ .+ ++||++++++|++.+.+++.. |+|
T Consensus 270 ~~~~--~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~i~~--~i-~~~~l~~~~~A~~~~~~~~~~gKvv 341 (344)
T 2h6e_A 270 MEGK--RVSLEAFDTAVWNKKLLGSNYGS---LNDLEDVVRLSESGKIKP--YI-IKVPLDDINKAFTNLDEGRVDGRQV 341 (344)
T ss_dssp CCSS--CCCCCHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSSCC--CE-EEECC----------------CEEE
T ss_pred CCCC--CcccCHHHHhhCCcEEEEEecCC---HHHHHHHHHHHHcCCCCc--ce-EEEeHHHHHHHHHHHHcCCCceEEE
Confidence 8542 3455555554 499999876432 367999999999999654 46 899999999999999887755 999
Q ss_pred Eec
Q 025257 251 LKM 253 (255)
Q Consensus 251 i~~ 253 (255)
|++
T Consensus 342 l~~ 344 (344)
T 2h6e_A 342 ITP 344 (344)
T ss_dssp ECC
T ss_pred EeC
Confidence 864
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=257.10 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=197.4
Q ss_pred CCCccccCCcccccc------cCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHH--hhcCCCCCC-EEE
Q 025257 5 RKSRFSINGKPIYHF------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVA 75 (255)
Q Consensus 5 ~~~~~~~~g~~v~~~------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~-~vl 75 (255)
|+.+|++ ||+|++. ..+|+|+||+++|+++++++|+++++++||+++++++|||+++. ...++++++ +||
T Consensus 73 Gv~~~~v-GdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~Vl 151 (324)
T 3nx4_A 73 EDPRFHA-GQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVV 151 (324)
T ss_dssp SSTTCCT-TCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred CCCCCCC-CCEEEEcccccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEE
Confidence 4678999 9999854 25699999999999999999999999999999999999999875 445677633 499
Q ss_pred EEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHH
Q 025257 76 VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM 154 (255)
Q Consensus 76 I~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~ 154 (255)
|+|+ |++|++++|+|+.+|+ +|++++++++++++++++|+++++|+++ .+. +++.+++++|++|||+|++. +
T Consensus 152 V~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~~~---~~~~~~~~~d~v~d~~g~~~-~ 224 (324)
T 3nx4_A 152 VTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANRILSRDE--FAE---SRPLEKQLWAGAIDTVGDKV-L 224 (324)
T ss_dssp ESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSEEEEGGG--SSC---CCSSCCCCEEEEEESSCHHH-H
T ss_pred EECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecCC--HHH---HHhhcCCCccEEEECCCcHH-H
Confidence 9998 9999999999999999 9999999999999999999999998875 332 55555568999999999985 9
Q ss_pred HHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCc---cCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 155 RAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
+.++++++++ |+++.+|.... ...+++...++. ++++.|++...... .+.++++++++++|++++ . .++|+
T Consensus 225 ~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~-~~~~~ 299 (324)
T 3nx4_A 225 AKVLAQMNYG-GCVAACGLAGG-FALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFYAQ--A-ATEIT 299 (324)
T ss_dssp HHHHHTEEEE-EEEEECCCTTC-SEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHHH--H-EEEEE
T ss_pred HHHHHHHhcC-CEEEEEecCCC-CCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCCCCC--C-ceeEe
Confidence 9999999997 99999998643 334555555544 99999987544321 245778889998888653 3 78999
Q ss_pred cchHHHHHHHhhCCCee-EEEEecC
Q 025257 231 LGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
++++++|++.+.+++.. |+||+++
T Consensus 300 l~~~~~A~~~~~~~~~~gkvvv~~~ 324 (324)
T 3nx4_A 300 LADAPKFADAIINNQVQGRTLVKIK 324 (324)
T ss_dssp GGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCceEEEecC
Confidence 99999999999988876 9999874
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=251.58 Aligned_cols=242 Identities=17% Similarity=0.202 Sum_probs=201.9
Q ss_pred CCCCCCccccCCccccccc--CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC
Q 025257 2 MNDRKSRFSINGKPIYHFM--GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL 79 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~--~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~ 79 (255)
+|+++.+|++ ||+| ++. .+|+|+||+++|++.++++|+++++++||+++.+++|||+++.+..+++++++|||+|+
T Consensus 72 vG~~v~~~~~-GdrV-~~~g~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga 149 (327)
T 1qor_A 72 VGSGVKHIKA-GDRV-VYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA 149 (327)
T ss_dssp ECTTCCSCCT-TCEE-EESCCSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred ECCCCCCCCC-CCEE-EECCCCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC
Confidence 3678889999 9999 443 35999999999999999999999999999999999999999877899999999999996
Q ss_pred -ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHH
Q 025257 80 -GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAA 157 (255)
Q Consensus 80 -g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~ 157 (255)
|++|++++|+++..|+ +|+++++++++.+.++++|++.++|+.+ +++.+.+.+.+++ ++|++|||+|.+. ++.+
T Consensus 150 ~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~D~vi~~~g~~~-~~~~ 225 (327)
T 1qor_A 150 AGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYRE--EDLVERLKEITGGKKVRVVYDSVGRDT-WERS 225 (327)
T ss_dssp TBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHTTTCCEEEEEECSCGGG-HHHH
T ss_pred CCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC--ccHHHHHHHHhCCCCceEEEECCchHH-HHHH
Confidence 9999999999999999 9999999999999999999999999887 8888888888877 8999999999655 9999
Q ss_pred HHHhccCCceEEEEccCCCCCccccCchhh-cc-CcEEEEeeeCCCC-----ccCcHHHHHHHHHcCCCCCCCcce--ee
Q 025257 158 LECCHKGWGTSVIVGVAASGQEISTRPFQL-VT-GRVWKGTAFGGFK-----SRSQVPWLVDKYMKKEIKVDEYVT--HN 228 (255)
Q Consensus 158 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~-~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~ 228 (255)
+++++++ |+++.+|..... ..+++...+ .+ ++++.+...+.+. ..+.++++++++++|++++ .+. ++
T Consensus 226 ~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~ 301 (327)
T 1qor_A 226 LDCLQRR-GLMVSFGNSSGA-VTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKV--DVAEQQK 301 (327)
T ss_dssp HHTEEEE-EEEEECCCTTCC-CCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSCC--CCCGGGE
T ss_pred HHHhcCC-CEEEEEecCCCC-CCccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCccc--ccccCcE
Confidence 9999997 999999986432 223444433 33 5666554321111 1235788999999999754 467 89
Q ss_pred eecchHHHHHHHhhCCCee-EEEEec
Q 025257 229 MTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
|+++++++|++.+.+++.. |+|+++
T Consensus 302 ~~l~~~~~A~~~~~~~~~~gKvvl~~ 327 (327)
T 1qor_A 302 YPLKDAQRAHEILESRATQGSSLLIP 327 (327)
T ss_dssp EEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred EcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 9999999999999887655 999864
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=252.80 Aligned_cols=245 Identities=19% Similarity=0.244 Sum_probs=202.6
Q ss_pred CCCCCC-ccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-
Q 025257 2 MNDRKS-RFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL- 79 (255)
Q Consensus 2 ~g~~~~-~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~- 79 (255)
+|+++. +|++ ||+|++.. +|+|+||+++|++.++++|+. + .++|+++.+++|||+++.+..++++|++|||+|+
T Consensus 98 vG~~V~~~~~v-GdrV~~~~-~G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~ 173 (362)
T 2c0c_A 98 LGLSASARYTV-GQAVAYMA-PGSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAA 173 (362)
T ss_dssp ECTTGGGTCCT-TCEEEEEC-SCCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTT
T ss_pred ECCCccCCCCC-CCEEEEcc-CCcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCC
Confidence 367788 8999 99998764 599999999999999999995 3 4667788899999999988899999999999995
Q ss_pred ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHH
Q 025257 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALE 159 (255)
Q Consensus 80 g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~ 159 (255)
|++|++++|+++..|+ +|+++++++++++.++++|++.++++.+ .++.+.+++.+++++|++|||+|... ++.+++
T Consensus 174 G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~ 249 (362)
T 2c0c_A 174 GGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKT--EPVGTVLKQEYPEGVDVVYESVGGAM-FDLAVD 249 (362)
T ss_dssp BTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT--SCHHHHHHHHCTTCEEEEEECSCTHH-HHHHHH
T ss_pred cHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC--hhHHHHHHHhcCCCCCEEEECCCHHH-HHHHHH
Confidence 9999999999999999 9999999999999999999999999887 78888888876558999999999965 999999
Q ss_pred HhccCCceEEEEccCCCCCc-c--------ccCchhhccCcEEEEeeeCCCC--ccCcHHHHHHHHHcCCCCCCCc----
Q 025257 160 CCHKGWGTSVIVGVAASGQE-I--------STRPFQLVTGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEY---- 224 (255)
Q Consensus 160 ~l~~~~G~~v~~g~~~~~~~-~--------~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 224 (255)
+++++ |+++.+|....... . .++...+.++.++.|++...+. ..++++++++++++|++++...
T Consensus 250 ~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~ 328 (362)
T 2c0c_A 250 ALATK-GRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDL 328 (362)
T ss_dssp HEEEE-EEEEECCCGGGTTSSSCCCCCCCTTHHHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTT
T ss_pred HHhcC-CEEEEEeCCCCcCcccccccccccccHHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccc
Confidence 99997 99999987532110 0 1111223348999998755432 1346889999999999876533
Q ss_pred --ceeeeecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 225 --VTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 225 --~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
+.+.|+++++++|++.+.+++.. |+|+++++
T Consensus 329 ~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 362 (362)
T 2c0c_A 329 SPEGRFTGLESIFRAVNYMYMGKNTGKIVVELPH 362 (362)
T ss_dssp STTCSCBSTTHHHHHHHHHHTTCCSBEEEEECCC
T ss_pred cccccccCHHHHHHHHHHHHcCCCCceEEEEcCC
Confidence 33568999999999999887655 99999865
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=251.65 Aligned_cols=217 Identities=22% Similarity=0.356 Sum_probs=184.4
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCC-CCCEEEEEcCChHHHHHHHHHHHcCCCeEE
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVI 99 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~ 99 (255)
.+|+|+||+++|+.+++++|+++++++||++++++.|||+++. ..+++ +|++|||+|+|++|++++|+|+..|+ +|+
T Consensus 138 ~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi 215 (366)
T 1yqd_A 138 TYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVT 215 (366)
T ss_dssp CCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEE
T ss_pred CCCccccEEEEchhhEEECCCCCCHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEE
Confidence 4599999999999999999999999999999999999999874 56788 99999999999999999999999999 999
Q ss_pred EEcCCcchHHHHH-hcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCC
Q 025257 100 GIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 178 (255)
Q Consensus 100 ~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~ 178 (255)
++++++++++.++ ++|+++++|+.+ . +.+++.++ ++|+|||++|.+..++.++++++++ |+++.+|....
T Consensus 216 ~~~~~~~~~~~~~~~lGa~~v~~~~~--~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-- 286 (366)
T 1yqd_A 216 VISTSPSKKEEALKNFGADSFLVSRD--Q---EQMQAAAG-TLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGAPEK-- 286 (366)
T ss_dssp EEESCGGGHHHHHHTSCCSEEEETTC--H---HHHHHTTT-CEEEEEECCSSCCCSHHHHHHEEEE-EEEEECCCCSS--
T ss_pred EEeCCHHHHHHHHHhcCCceEEeccC--H---HHHHHhhC-CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEccCCC--
Confidence 9999999999887 899999998875 4 34555553 7999999999864489999999997 99999998542
Q ss_pred ccccCchhhcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEecC
Q 025257 179 EISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 179 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
..+++...++. ++++.|+.... .++++++++++++|++++. + ++|||+++++|++.+.+++.. |+|++++
T Consensus 287 ~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~~ 358 (366)
T 1yqd_A 287 PLELPAFSLIAGRKIVAGSGIGG---MKETQEMIDFAAKHNITAD--I-EVISTDYLNTAMERLAKNDVRYRFVIDVG 358 (366)
T ss_dssp CEEECHHHHHTTTCEEEECCSCC---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCSSEEEECHH
T ss_pred CCCcCHHHHHhCCcEEEEecCCC---HHHHHHHHHHHHcCCCCCc--e-EEEcHHHHHHHHHHHHcCCcceEEEEEcc
Confidence 34455555554 89999876542 3578999999999997654 4 699999999999999888765 9999864
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=278.56 Aligned_cols=240 Identities=17% Similarity=0.227 Sum_probs=204.7
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-C
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-G 80 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g 80 (255)
+|++|.+|++ ||+|+++. .|+|+||+++++..++++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |
T Consensus 279 vG~~V~~~~v-GDrV~~~~-~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaG 356 (795)
T 3slk_A 279 TGPGVTGLAP-GDRVMGMI-PKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAG 356 (795)
T ss_dssp ECSSCCSSCT-TCEEEECC-SSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTB
T ss_pred eCCCCCcCCC-CCEEEEEe-cCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCC
Confidence 4788999999 99999874 5999999999999999999999999999999999999999989999999999999997 9
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHH
Q 025257 81 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALE 159 (255)
Q Consensus 81 ~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~ 159 (255)
++|++++|+|+++|+ +|+++++++ +.+.++ +|+++++++++ .++.+.+++.+++ ++|+|||++|++. ++.+++
T Consensus 357 gvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~~~~--~~~~~~i~~~t~g~GvDvVld~~gg~~-~~~~l~ 430 (795)
T 3slk_A 357 GVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLASSRT--CDFEQQFLGATGGRGVDVVLNSLAGEF-ADASLR 430 (795)
T ss_dssp HHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEECSSS--STHHHHHHHHSCSSCCSEEEECCCTTT-THHHHT
T ss_pred HHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhheeecCC--hhHHHHHHHHcCCCCeEEEEECCCcHH-HHHHHH
Confidence 999999999999999 999999655 666665 99999999998 8999999999998 9999999999977 899999
Q ss_pred HhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCC---ccCcHHHHHHHHHcCCCCCCCcceeeeecchHHH
Q 025257 160 CCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK---SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 236 (255)
Q Consensus 160 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (255)
+++++ |+++.+|.........+ ....++.++.++.+.... ..+.++++++++++|++++ .+.++||++++++
T Consensus 431 ~l~~~-Gr~v~iG~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~p--~~~~~~~l~~~~e 505 (795)
T 3slk_A 431 MLPRG-GRFLELGKTDVRDPVEV--ADAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVLEP--LPVTAWDVRQAPE 505 (795)
T ss_dssp SCTTC-EEEEECCSTTCCCHHHH--HHHSSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSCCC--CCEEEEEGGGHHH
T ss_pred HhcCC-CEEEEeccccccCcccc--cccCCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCcCC--CcceeEcHHHHHH
Confidence 99996 99999998643322222 122346777666543211 1246788999999999654 5778999999999
Q ss_pred HHHHhhCCCee-EEEEecC
Q 025257 237 AFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 237 a~~~~~~~~~~-k~vi~~~ 254 (255)
||+.+.+++.. |+||+++
T Consensus 506 A~~~l~~g~~~GKvVl~~~ 524 (795)
T 3slk_A 506 ALRHLSQARHVGKLVLTMP 524 (795)
T ss_dssp HHHHHHHTCCCBEEEEECC
T ss_pred HHHHHhcCCccceEEEecC
Confidence 99999888876 9999875
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=249.23 Aligned_cols=239 Identities=16% Similarity=0.206 Sum_probs=193.6
Q ss_pred CCCCCCccccCCcccccccC---ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcC----CCCCCEE
Q 025257 2 MNDRKSRFSINGKPIYHFMG---TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK----VEPGSIV 74 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~---~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~----~~~~~~v 74 (255)
+|+++.+|++ ||+|++..+ +|+|+||+++++++++++|+++++++||+++++++|||+++.+..+ +++|++|
T Consensus 109 vG~~V~~~~v-GDrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~V 187 (375)
T 2vn8_A 109 CGLDVKYFKP-GDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRV 187 (375)
T ss_dssp ECTTCCSCCT-TCEEEEECCTTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEE
T ss_pred eCCCCCCCCC-CCEEEEecCCCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEE
Confidence 3678899999 999987643 6999999999999999999999999999999999999999877888 9999999
Q ss_pred EEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH-H
Q 025257 75 AVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV-S 152 (255)
Q Consensus 75 lI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~-~ 152 (255)
||+|+ |++|++++|+|+..|+ +|++++ ++++.++++++|++.++|+.+ .++.+.+.+. +++|++|||+|.+ .
T Consensus 188 lV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~~~~--~~~~~~~~~~--~g~D~vid~~g~~~~ 261 (375)
T 2vn8_A 188 LILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRKLGADDVIDYKS--GSVEEQLKSL--KPFDFILDNVGGSTE 261 (375)
T ss_dssp EEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS--SCHHHHHHTS--CCBSEEEESSCTTHH
T ss_pred EEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHHcCCCEEEECCc--hHHHHHHhhc--CCCCEEEECCCChhh
Confidence 99995 9999999999999999 999998 678999999999999999887 7787777653 3799999999998 4
Q ss_pred HHHHHHHHhccCCceEEEEccCCCCCccc---cCc------hhh-c-------cCcEEEEeeeCCCCccCcHHHHHHHHH
Q 025257 153 VMRAALECCHKGWGTSVIVGVAASGQEIS---TRP------FQL-V-------TGRVWKGTAFGGFKSRSQVPWLVDKYM 215 (255)
Q Consensus 153 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~---~~~------~~~-~-------~~~~~~g~~~~~~~~~~~~~~~~~~~~ 215 (255)
.++.++++++++ |+++.+|..... ... +.. ..+ . ++..+..... ....+.+++++++++
T Consensus 262 ~~~~~~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~l~~ 337 (375)
T 2vn8_A 262 TWAPDFLKKWSG-ATYVTLVTPFLL-NMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFF--MASGPCLDDIAELVD 337 (375)
T ss_dssp HHGGGGBCSSSC-CEEEESCCSHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCC--CCCHHHHHHHHHHHH
T ss_pred hhHHHHHhhcCC-cEEEEeCCCccc-ccccccccchhheeehhhccccccccccCcceEEEEe--CCCHHHHHHHHHHHH
Confidence 468899999997 999999874311 110 000 011 1 2333322211 112356799999999
Q ss_pred cCCCCCCCcceeeeecchHHHHHHHhhCCCee-EEEEec
Q 025257 216 KKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
+|+++ +.+.++||++++++|++.+.+++.. |+|+++
T Consensus 338 ~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~ 374 (375)
T 2vn8_A 338 AGKIR--PVIEQTFPFSKVPEAFLKVERGHARGKTVINV 374 (375)
T ss_dssp TTSCC--CCEEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred CCCcc--cCcCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence 99964 5677899999999999999877655 999975
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=247.78 Aligned_cols=238 Identities=16% Similarity=0.228 Sum_probs=186.0
Q ss_pred CCCccccCCcccccc------cCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHH--hhcCCCCCC-EEE
Q 025257 5 RKSRFSINGKPIYHF------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVA 75 (255)
Q Consensus 5 ~~~~~~~~g~~v~~~------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~-~vl 75 (255)
++.+|++ ||+|++. ..+|+|+||+++|+++++++|+++++++||++++++.|||.++. +..++++++ +||
T Consensus 76 ~v~~~~v-GdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~Vl 154 (328)
T 1xa0_A 76 QHPRFRE-GDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVL 154 (328)
T ss_dssp CSSSCCT-TCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred CCCCCCC-CCEEEEccccCCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEE
Confidence 5678999 9999854 23699999999999999999999999999999999999998864 457899986 999
Q ss_pred EEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHH
Q 025257 76 VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM 154 (255)
Q Consensus 76 I~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~ 154 (255)
|+|+ |++|++++|+++.+|+ +|++++++++++++++++|+++++|+.+ .+ .+.+++.+++++|++|||+|++. +
T Consensus 155 V~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~--~~-~~~~~~~~~~~~d~vid~~g~~~-~ 229 (328)
T 1xa0_A 155 VTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLARED--VM-AERIRPLDKQRWAAAVDPVGGRT-L 229 (328)
T ss_dssp ESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC------------CCSCCEEEEEECSTTTT-H
T ss_pred EecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC--cH-HHHHHHhcCCcccEEEECCcHHH-H
Confidence 9998 9999999999999999 9999999999999999999999998875 43 34455555458999999999975 9
Q ss_pred HHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCc---cCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 155 RAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
+.++++++++ |+++.+|.... ...+++...++ +++++.|+....... .+.++++.++++++ ++ + +.++||
T Consensus 230 ~~~~~~l~~~-G~~v~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-l~--~-~~~~~~ 303 (328)
T 1xa0_A 230 ATVLSRMRYG-GAVAVSGLTGG-AEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-LE--R-IAQEIS 303 (328)
T ss_dssp HHHHHTEEEE-EEEEECSCCSS-SCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-HH--H-HEEEEE
T ss_pred HHHHHhhccC-CEEEEEeecCC-CCCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHcC-Cc--e-eeeEeC
Confidence 9999999997 99999998642 23344544544 499999875322211 12344555555555 43 2 458999
Q ss_pred cchHHHHHHHhhCCCee-EEEEecC
Q 025257 231 LGEINEAFRYMHGGDCL-RCVLKMQ 254 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~~~-k~vi~~~ 254 (255)
++++++|++.+.+++.. |+||+++
T Consensus 304 l~~~~~A~~~~~~~~~~gKvvv~~~ 328 (328)
T 1xa0_A 304 LAELPQALKRILRGELRGRTVVRLA 328 (328)
T ss_dssp GGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEeC
Confidence 99999999999877655 9999863
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=251.53 Aligned_cols=239 Identities=17% Similarity=0.216 Sum_probs=190.5
Q ss_pred CCCccccCCcccccc------cCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHH--hhcCCCCCC-EEE
Q 025257 5 RKSRFSINGKPIYHF------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVA 75 (255)
Q Consensus 5 ~~~~~~~~g~~v~~~------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~-~vl 75 (255)
++.+|++ ||+|++. ..+|+|+||+++|+++++++|+++++++||++++++.|||.++. ...++++++ +||
T Consensus 77 ~v~~~~v-GdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~Vl 155 (330)
T 1tt7_A 77 NDPRFAE-GDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVL 155 (330)
T ss_dssp SSTTCCT-TCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred CCCCCCC-CCEEEEcccccCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEE
Confidence 5678899 9999854 24699999999999999999999999999999999999998764 457889996 999
Q ss_pred EEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHH
Q 025257 76 VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM 154 (255)
Q Consensus 76 I~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~ 154 (255)
|+|+ |++|++++|+++.+|+ +|++++++++++++++++|+++++|+++ .+ .+.+++.+++++|++|||+|++. +
T Consensus 156 V~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~v~~~~~--~~-~~~~~~~~~~~~d~vid~~g~~~-~ 230 (330)
T 1tt7_A 156 VTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED--VY-DGTLKALSKQQWQGAVDPVGGKQ-L 230 (330)
T ss_dssp EESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH--HC-SSCCCSSCCCCEEEEEESCCTHH-H
T ss_pred EECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC--ch-HHHHHHhhcCCccEEEECCcHHH-H
Confidence 9998 9999999999999999 8999999999999999999999987643 22 12233444448999999999975 9
Q ss_pred HHHHHHhccCCceEEEEccCCCCCccccCchhhc-cCcEEEEeeeCCCCc---cCcHHHHHHHHHcCCCCCCCcceeeee
Q 025257 155 RAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMT 230 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (255)
+.++++++++ |+++.+|.... ...+++...++ +++++.|++...... .+.++++.+++++|++ ++.+.++||
T Consensus 231 ~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~i~~~~~ 306 (330)
T 1tt7_A 231 ASLLSKIQYG-GSVAVSGLTGG-GEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQL--LTIVDREVS 306 (330)
T ss_dssp HHHHTTEEEE-EEEEECCCSSC-SCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCCSCS--TTSEEEEEC
T ss_pred HHHHHhhcCC-CEEEEEecCCC-CccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhcCCc--ccccceEEc
Confidence 9999999997 99999998643 23455555544 499999885322211 1234455556666774 456778999
Q ss_pred cchHHHHHHHhhCCCee-EEEEec
Q 025257 231 LGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 231 ~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
++++++|++.+.+++.. |+||++
T Consensus 307 l~~~~~A~~~~~~~~~~gKvvi~~ 330 (330)
T 1tt7_A 307 LEETPGALKDILQNRIQGRVIVKL 330 (330)
T ss_dssp STTHHHHHHHTTTTCCSSEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCeEEEeC
Confidence 99999999999877755 999864
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-35 Score=242.88 Aligned_cols=241 Identities=17% Similarity=0.246 Sum_probs=200.5
Q ss_pred CCCccccCCcccccccCccceeeEEEEcCCceEEcCCCC-----CcccccccccchhhhhhHHHhhcCCCCC--CEEEEE
Q 025257 5 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA-----PLDKVCLLGCGVPTGLGAVWNTAKVEPG--SIVAVF 77 (255)
Q Consensus 5 ~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~-----~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~ 77 (255)
++.+|++ ||+|++. .|+|+||+++|+++++++|+++ +++ +|+++.+++|||+++.+..+++++ ++|||+
T Consensus 92 ~v~~~~v-GdrV~~~--~G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~ 167 (357)
T 2zb4_A 92 KHTNLTK-GDFVTSF--YWPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVS 167 (357)
T ss_dssp CSTTCCT-TCEEEEE--EEESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEES
T ss_pred CCCCCCC-CCEEEec--CCCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEE
Confidence 5678999 9999876 3899999999999999999998 555 677888999999999888999999 999999
Q ss_pred cC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHH
Q 025257 78 GL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMR 155 (255)
Q Consensus 78 G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~ 155 (255)
|+ |++|++++|+++..|+++|+++++++++.+.+++ +|++.++|+.+ .++.+.+.+.+++++|++|||+|... ++
T Consensus 168 GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~d~vi~~~G~~~-~~ 244 (357)
T 2zb4_A 168 GAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK--DNVAEQLRESCPAGVDVYFDNVGGNI-SD 244 (357)
T ss_dssp STTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTT--SCHHHHHHHHCTTCEEEEEESCCHHH-HH
T ss_pred CCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCc--hHHHHHHHHhcCCCCCEEEECCCHHH-HH
Confidence 98 9999999999999998789999999999999876 99999999887 78888888887668999999999865 99
Q ss_pred HHHHHhccCCceEEEEccCCCC-CccccCc-------hhhc-cCcEEEEeeeCCCC--ccCcHHHHHHHHHcCCCCCCCc
Q 025257 156 AALECCHKGWGTSVIVGVAASG-QEISTRP-------FQLV-TGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEY 224 (255)
Q Consensus 156 ~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~-------~~~~-~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 224 (255)
.++++++++ |+++.+|..... ..++++. ..++ +++++.|+....+. ..+.++++++++++|++++.
T Consensus 245 ~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~-- 321 (357)
T 2zb4_A 245 TVISQMNEN-SHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIK-- 321 (357)
T ss_dssp HHHHTEEEE-EEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCC--
T ss_pred HHHHHhccC-cEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCc--
Confidence 999999997 999999875421 1222221 2333 48999988654321 13568899999999998765
Q ss_pred ceeeeecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 225 VTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
+..+|+++++++|++.+.+++.. |+||++++
T Consensus 322 ~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 353 (357)
T 2zb4_A 322 ETVINGLENMGAAFQSMMTGGNIGKQIVCISE 353 (357)
T ss_dssp EEEEECGGGHHHHHHHHHTTCCSBEEEEECCC
T ss_pred cceecCHHHHHHHHHHHHcCCCCceEEEEEec
Confidence 34579999999999999887655 99998853
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=240.35 Aligned_cols=243 Identities=20% Similarity=0.263 Sum_probs=197.2
Q ss_pred CCCCCCccccCCcccccccCccceeeEEEEcCCc--eEEcCC---CCCcccccccccchhhhhhHHHhhcCCCCCCEEEE
Q 025257 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS--VAKIDP---QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 76 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~--~~~~p~---~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI 76 (255)
+|.++.+|++ ||+|++. |+|+||+++++.. ++++|+ .++++ +|+++++++|||+++.+..++++|++|||
T Consensus 87 V~~~v~~~~v-GdrV~~~---g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI 161 (345)
T 2j3h_A 87 IESGHPDYKK-GDLLWGI---VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYV 161 (345)
T ss_dssp EEECSTTCCT-TCEEEEE---EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEE
T ss_pred EecCCCCCCC-CCEEEee---cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEE
Confidence 3456778999 9999864 7899999999876 999996 35555 67888899999999888899999999999
Q ss_pred EcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHH
Q 025257 77 FGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM 154 (255)
Q Consensus 77 ~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~ 154 (255)
+|+ |++|++++|+++..|+ +|+++++++++.+.++ ++|++.++|+.+ ..++.+.+++.+++++|++||++|.+. +
T Consensus 162 ~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~~~~~~~~~~d~vi~~~g~~~-~ 238 (345)
T 2j3h_A 162 SAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE-ESDLTAALKRCFPNGIDIYFENVGGKM-L 238 (345)
T ss_dssp SSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCCSEEEETTS-CSCSHHHHHHHCTTCEEEEEESSCHHH-H
T ss_pred ECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEecCC-HHHHHHHHHHHhCCCCcEEEECCCHHH-H
Confidence 997 9999999999999999 9999999999999998 799998888764 136777777776558999999999865 9
Q ss_pred HHHHHHhccCCceEEEEccCCCC----CccccCchhhcc-CcEEEEeeeCCCCc--cCcHHHHHHHHHcCCCCCCCccee
Q 025257 155 RAALECCHKGWGTSVIVGVAASG----QEISTRPFQLVT-GRVWKGTAFGGFKS--RSQVPWLVDKYMKKEIKVDEYVTH 227 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~~~~~----~~~~~~~~~~~~-~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 227 (255)
+.++++++++ |+++.+|..... ....++...++. ++++.|+....+.. .+.++++++++++|+++ +.+.+
T Consensus 239 ~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~--~~~~~ 315 (345)
T 2j3h_A 239 DAVLVNMNMH-GRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKIT--YVEDV 315 (345)
T ss_dssp HHHHTTEEEE-EEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSC--CCEEE
T ss_pred HHHHHHHhcC-CEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCc--Ccccc
Confidence 9999999997 999999875421 122344444444 88998876543211 12488899999999976 34566
Q ss_pred eeecchHHHHHHHhhCCCee-EEEEecCC
Q 025257 228 NMTLGEINEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
+|+|+++++|++.+.+++.. |+|+++++
T Consensus 316 ~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 344 (345)
T 2j3h_A 316 ADGLEKAPEALVGLFHGKNVGKQVVVVAR 344 (345)
T ss_dssp EESGGGSHHHHHHHHTTCCSSEEEEESSC
T ss_pred cCCHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence 89999999999999887766 99998853
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=239.57 Aligned_cols=227 Identities=18% Similarity=0.259 Sum_probs=185.8
Q ss_pred CcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHH
Q 025257 13 GKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAK 91 (255)
Q Consensus 13 g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~ 91 (255)
||+|++...+|+|+||+++|++.++++|++++++++|+++++++|||+++.+.. +++|++|||+|+ |++|++++|+++
T Consensus 69 GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~ 147 (302)
T 1iz0_A 69 GRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVAR 147 (302)
T ss_dssp TEEEEEECSSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHH
T ss_pred CcEEEEecCCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHH
Confidence 899988777799999999999999999999999999999999999999987777 999999999998 999999999999
Q ss_pred HcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 92 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 92 ~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
..|+ +|+++++++++++.++++|+++++|+++ .+++.+.+ +++|++|| +|.+. ++.++++++++ |+++.+
T Consensus 148 ~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~-~~~~~~~~-----~~~d~vid-~g~~~-~~~~~~~l~~~-G~~v~~ 217 (302)
T 1iz0_A 148 AMGL-RVLAAASRPEKLALPLALGAEEAATYAE-VPERAKAW-----GGLDLVLE-VRGKE-VEESLGLLAHG-GRLVYI 217 (302)
T ss_dssp HTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGG-HHHHHHHT-----TSEEEEEE-CSCTT-HHHHHTTEEEE-EEEEEC
T ss_pred HCCC-EEEEEeCCHHHHHHHHhcCCCEEEECCc-chhHHHHh-----cCceEEEE-CCHHH-HHHHHHhhccC-CEEEEE
Confidence 9999 9999999999999999999999887641 02333333 47999999 99865 99999999997 999999
Q ss_pred ccCCCCCccccCchhhc-cCcEEEEeeeCCC-CccCcHHHHHH---HHHcCCCCCCCcceeeeecchHHHHHHHhhCCCe
Q 025257 172 GVAASGQEISTRPFQLV-TGRVWKGTAFGGF-KSRSQVPWLVD---KYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC 246 (255)
Q Consensus 172 g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 246 (255)
|..... ...++...++ +++++.|+....+ ...++++++++ ++.+|+++ +.+.++||++++++|++.+.+++.
T Consensus 218 g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~ 294 (302)
T 1iz0_A 218 GAAEGE-VAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELR--PVVGPVFPFAEAEAAFRALLDRGH 294 (302)
T ss_dssp --------CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTTTBC--CCEEEEEEGGGHHHHHHHTTCTTC
T ss_pred eCCCCC-CCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcCCcc--cccceEEcHHHHHHHHHHHHcCCC
Confidence 886432 2234444444 4899999875422 12356888999 99999864 567899999999999999987765
Q ss_pred e-EEEEec
Q 025257 247 L-RCVLKM 253 (255)
Q Consensus 247 ~-k~vi~~ 253 (255)
. |+++++
T Consensus 295 ~gKvvv~~ 302 (302)
T 1iz0_A 295 TGKVVVRL 302 (302)
T ss_dssp CBEEEEEC
T ss_pred CceEEEeC
Confidence 5 999864
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=248.07 Aligned_cols=241 Identities=15% Similarity=0.160 Sum_probs=192.7
Q ss_pred CCCC-CccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE--cC
Q 025257 3 NDRK-SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GL 79 (255)
Q Consensus 3 g~~~-~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~--G~ 79 (255)
|+++ .+|++ ||+|++. .+|+|+||+++|+++++++|+++++++||+++++++|||+++ +... +++++|||+ |+
T Consensus 106 G~~v~~~~~v-GdrV~~~-~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~ 181 (379)
T 3iup_A 106 GSSPAAQALM-GKTVAAI-GGAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAA 181 (379)
T ss_dssp CSSHHHHTTT-TCEEEEC-CSCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTT
T ss_pred CCCcccCCCC-CCEEEec-CCCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCC
Confidence 5666 78999 9999976 459999999999999999999999999999999999999765 4445 899999999 45
Q ss_pred ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHH
Q 025257 80 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAAL 158 (255)
Q Consensus 80 g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~ 158 (255)
|++|++++|+|+.+|+ +|++++++++++++++++|+++++|+++ +++.+.+++.+++ ++|++|||+|++..++.++
T Consensus 182 G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~ 258 (379)
T 3iup_A 182 SNLGQMLNQICLKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAAS--PTFMQDLTEALVSTGATIAFDATGGGKLGGQIL 258 (379)
T ss_dssp SHHHHHHHHHHHHHTC-CEEEEESSHHHHHHHHHTTCSCEEETTS--TTHHHHHHHHHHHHCCCEEEESCEEESHHHHHH
T ss_pred CHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCCC--hHHHHHHHHHhcCCCceEEEECCCchhhHHHHH
Confidence 9999999999999999 9999999999999999999999999988 8999999999988 9999999999876578888
Q ss_pred HHhc-----cC----------CceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCC---ccCcH----HHHHHHHHc
Q 025257 159 ECCH-----KG----------WGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK---SRSQV----PWLVDKYMK 216 (255)
Q Consensus 159 ~~l~-----~~----------~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~----~~~~~~~~~ 216 (255)
++++ ++ +|+++.+|... ..+.+++ ..+.+++++.|+++..+. ..+.+ +++++++.+
T Consensus 259 ~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~-~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (379)
T 3iup_A 259 TCMEAALNKSAREYSRYGSTTHKQVYLYGGLD-TSPTEFN-RNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKT 336 (379)
T ss_dssp HHHHHHHHTTCCSCCTTCCCSCEEEEECCCSE-EEEEEEC-CCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT
T ss_pred HhcchhhhccccceeecccccCceEEEecCCC-CCccccc-cccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhc
Confidence 8885 42 04555555432 1122222 123348899888765431 11223 445555555
Q ss_pred CCCCCCCcceeeeecchH--HHHHHHhhCCCee-EEEEecCC
Q 025257 217 KEIKVDEYVTHNMTLGEI--NEAFRYMHGGDCL-RCVLKMQD 255 (255)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~-k~vi~~~~ 255 (255)
. +.+.++++|||+++ ++|++.+.+++.. |+||++++
T Consensus 337 -~--l~~~i~~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~~~ 375 (379)
T 3iup_A 337 -T--FASHYSKEISLAEVLDLDMIAVYNKRATGEKYLINPNK 375 (379)
T ss_dssp -T--TCCCCSEEEEHHHHTCHHHHHHHTTCCTTCCEEEETTT
T ss_pred -c--CCCcceEEecHHHhhhHHHHHHHhcCCCCceEEEeCCC
Confidence 3 55567899999999 9999999888765 99999863
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=247.32 Aligned_cols=220 Identities=12% Similarity=0.087 Sum_probs=183.3
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHH--h--hcCCC--C-------CCEEEEEcCChHHHHHH
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW--N--TAKVE--P-------GSIVAVFGLGTVGLAVA 87 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~--~~~~~--~-------~~~vlI~G~g~vG~~a~ 87 (255)
.+|+|+||+++++++++++|++++ ++|| ++.++.|||+++. + ..+++ + |++|||+|+|++|++++
T Consensus 120 ~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~ 197 (366)
T 2cdc_A 120 MDGFMREWWYDDPKYLVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFT 197 (366)
T ss_dssp ECCSCBSEEEECGGGEEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHH
T ss_pred CCCceeEEEEechHHeEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHH
Confidence 359999999999999999999999 8765 6679999999986 4 78888 8 99999999999999999
Q ss_pred HHHHHcCCCeEEEEcCCc---chHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHH-HHHHHHhcc
Q 025257 88 EGAKAAGASRVIGIDIDP---KKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM-RAALECCHK 163 (255)
Q Consensus 88 ~l~~~~g~~~v~~~~~~~---~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~-~~~~~~l~~ 163 (255)
|+++..|+ +|+++++++ ++.++++++|++.+ | . .++.+.+.+ +++++|++||++|.+..+ +.+++++++
T Consensus 198 q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-~---~~~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~ 270 (366)
T 2cdc_A 198 LLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY-N-S---SNGYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLGR 270 (366)
T ss_dssp HHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE-E-C---TTCSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEE
T ss_pred HHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee-c-h---HHHHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhc
Confidence 99999999 999999998 89999999999888 6 4 255556665 445899999999997558 999999999
Q ss_pred CCceEEEEccCCCCCccccCchh---hcc-CcEEEEeeeCCCCccCcHHHHHHHHHcCCCC----CCCcceeeeecchHH
Q 025257 164 GWGTSVIVGVAASGQEISTRPFQ---LVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK----VDEYVTHNMTLGEIN 235 (255)
Q Consensus 164 ~~G~~v~~g~~~~~~~~~~~~~~---~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 235 (255)
+ |+++.+|.... ...+++... ++. ++++.|+... ..++++++++++++|+++ +++.++++||+++++
T Consensus 271 ~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~ 345 (366)
T 2cdc_A 271 N-GVLGLFGFSTS-GSVPLDYKTLQEIVHTNKTIIGLVNG---QKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEK 345 (366)
T ss_dssp E-EEEEECSCCCS-CEEEEEHHHHHHHHHTTCEEEECCCC---CHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHH
T ss_pred C-CEEEEEecCCC-CccccChhhhHHHHhcCcEEEEecCC---CHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHH
Confidence 7 99999998643 224555554 444 9999987543 236789999999999976 677788999999999
Q ss_pred HHHHH--hhCCCeeEEEEecC
Q 025257 236 EAFRY--MHGGDCLRCVLKMQ 254 (255)
Q Consensus 236 ~a~~~--~~~~~~~k~vi~~~ 254 (255)
+|++. +..+...|+||+++
T Consensus 346 ~A~~~l~~~~~~~gKvvi~~~ 366 (366)
T 2cdc_A 346 ELLKVLREKEHGEIKIRILWE 366 (366)
T ss_dssp HHHHHHHCCCTTCCEEEEECC
T ss_pred HHHHHHhhhcCCceEEEEecC
Confidence 99998 55444459999874
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=233.11 Aligned_cols=239 Identities=20% Similarity=0.240 Sum_probs=195.1
Q ss_pred CCCccccCCcccccccCccceeeEEEEcCCceEEcCCC----CCccc-ccccccchhhhhhHHHhhcCCCCCCEEEEEcC
Q 025257 5 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ----APLDK-VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL 79 (255)
Q Consensus 5 ~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~----~~~~~-aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~ 79 (255)
++.+|++ ||+|++. |+|+||+++|+++++++|++ +++++ +|+++++++|||+++.+..+++++++|||+|+
T Consensus 79 ~v~~~~v-GdrV~~~---g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga 154 (333)
T 1v3u_A 79 KNSAFPA-GSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAA 154 (333)
T ss_dssp SCTTSCT-TCEEEEC---CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEEST
T ss_pred CCCCCCC-CCEEEec---CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecC
Confidence 5678998 9999864 89999999999999999997 88887 58899999999999888899999999999998
Q ss_pred -ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHH
Q 025257 80 -GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAAL 158 (255)
Q Consensus 80 -g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~ 158 (255)
|++|++++|+++..|+ +|+++++++++.+.++++|++.++|..+ .+++.+.+.+.+++++|+++|++|.+. ++.++
T Consensus 155 ~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~ 231 (333)
T 1v3u_A 155 AGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT-VNSLEEALKKASPDGYDCYFDNVGGEF-LNTVL 231 (333)
T ss_dssp TBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS-CSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHH
T ss_pred CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCcEEEecCC-HHHHHHHHHHHhCCCCeEEEECCChHH-HHHHH
Confidence 9999999999999999 9999999999999999999988888753 246777777776668999999999876 99999
Q ss_pred HHhccCCceEEEEccCCCCC----ccc-cCchhhc-cCcEEEEeeeCCCC---ccCcHHHHHHHHHcCCCCCCCcceeee
Q 025257 159 ECCHKGWGTSVIVGVAASGQ----EIS-TRPFQLV-TGRVWKGTAFGGFK---SRSQVPWLVDKYMKKEIKVDEYVTHNM 229 (255)
Q Consensus 159 ~~l~~~~G~~v~~g~~~~~~----~~~-~~~~~~~-~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (255)
++++++ |+++.+|...... ... .+...++ +++++.|+....+. ..+.++++++++++|++++... .++
T Consensus 232 ~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~--~~~ 308 (333)
T 1v3u_A 232 SQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEH--VTK 308 (333)
T ss_dssp TTEEEE-EEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCEE--EEE
T ss_pred HHHhcC-CEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCccc--ccc
Confidence 999997 9999999764311 111 2333343 48999998754432 1246778999999999876533 468
Q ss_pred ecchHHHHHHHhhCCCee-EEEEec
Q 025257 230 TLGEINEAFRYMHGGDCL-RCVLKM 253 (255)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~-k~vi~~ 253 (255)
+++++++|++.+.+++.. |+||++
T Consensus 309 ~l~~~~~A~~~~~~~~~~gKvvl~~ 333 (333)
T 1v3u_A 309 GFENMPAAFIEMLNGANLGKAVVTA 333 (333)
T ss_dssp CGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred CHHHHHHHHHHHHcCCCCceEEEeC
Confidence 999999999999877655 999874
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=264.39 Aligned_cols=235 Identities=16% Similarity=0.244 Sum_probs=198.0
Q ss_pred CcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHH
Q 025257 13 GKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAK 91 (255)
Q Consensus 13 g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~ 91 (255)
||+|+++...|+|+||+++|+..++++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+
T Consensus 1610 GdrV~g~~~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk 1689 (2512)
T 2vz8_A 1610 GRRVMGMVPAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIAL 1689 (2512)
T ss_dssp SCCEEEECSSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHH
T ss_pred CCEEEEeecCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHH
Confidence 8999988777999999999999999999999999999999999999999988999999999999986 999999999999
Q ss_pred HcCCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCc
Q 025257 92 AAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWG 166 (255)
Q Consensus 92 ~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G 166 (255)
..|+ +|+++++++++++++++ +|+++++++++ .++.+.+++.+++ ++|+|||+++++. ++.++++++++ |
T Consensus 1690 ~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~--~~~~~~i~~~t~g~GvDvVld~~g~~~-l~~~l~~L~~~-G 1764 (2512)
T 2vz8_A 1690 SRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANSRD--TSFEQHVLRHTAGKGVDLVLNSLAEEK-LQASVRCLAQH-G 1764 (2512)
T ss_dssp HTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEESSS--SHHHHHHHHTTTSCCEEEEEECCCHHH-HHHHHTTEEEE-E
T ss_pred HcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecCCC--HHHHHHHHHhcCCCCceEEEECCCchH-HHHHHHhcCCC-c
Confidence 9999 99999999999999975 78899999988 8999999999988 9999999998666 99999999996 9
Q ss_pred eEEEEccCCCCCccccCchhhccCcEEEEeeeCCCC--ccCcHHHHHHHHH----cCCCCCCCcceeeeecchHHHHHHH
Q 025257 167 TSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK--SRSQVPWLVDKYM----KKEIKVDEYVTHNMTLGEINEAFRY 240 (255)
Q Consensus 167 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~ 240 (255)
+++.+|..............+.+++++.++.+..+. ....++++++++. ++.+ .+.+.++||++++++|++.
T Consensus 1765 r~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l--~p~i~~~f~l~ei~eA~~~ 1842 (2512)
T 2vz8_A 1765 RFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVV--QPLKCTVFPRTKVEAAFRY 1842 (2512)
T ss_dssp EEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCS--CCCCEEEEESSTHHHHHHH
T ss_pred EEEEeecccccccCcccccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCc--CCCcceEecHHHHHHHHHh
Confidence 999998642111112223334458999888764432 1234566666654 5554 4567889999999999999
Q ss_pred hhCCCee-EEEEecC
Q 025257 241 MHGGDCL-RCVLKMQ 254 (255)
Q Consensus 241 ~~~~~~~-k~vi~~~ 254 (255)
+.+++.. |+|++++
T Consensus 1843 l~~g~~~GKvVi~~~ 1857 (2512)
T 2vz8_A 1843 MAQGKHIGKVVIQVR 1857 (2512)
T ss_dssp HHTTCCSSEEEEECS
T ss_pred hhccCccceEEEECC
Confidence 9988776 9999874
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-27 Score=179.24 Aligned_cols=184 Identities=18% Similarity=0.250 Sum_probs=140.1
Q ss_pred CceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 025257 34 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 112 (255)
Q Consensus 34 ~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~ 112 (255)
++++++|+++++++||+++++++|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++
T Consensus 2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS 80 (198)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 5688999999999999999999999999878889999999999996 9999999999999999 9999999999998999
Q ss_pred hcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCc
Q 025257 113 NFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 191 (255)
Q Consensus 113 ~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~ 191 (255)
++|++.++|..+ .+..+.+.+.+.+ ++|+++|++|.+. ++..+++++++ |+++.+|........+++...+.+++
T Consensus 81 ~~g~~~~~d~~~--~~~~~~~~~~~~~~~~D~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~ 156 (198)
T 1pqw_A 81 RLGVEYVGDSRS--VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPG-GRFIELGKKDVYADASLGLAALAKSA 156 (198)
T ss_dssp TTCCSEEEETTC--STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEE-EEEEECSCGGGTTTCEEEGGGGTTTC
T ss_pred HcCCCEEeeCCc--HHHHHHHHHHhCCCCCeEEEECCchHH-HHHHHHHhccC-CEEEEEcCCCCcCcCcCChhHhcCCc
Confidence 999988888876 7788888887766 8999999998766 99999999997 99999988542112223333334588
Q ss_pred EEEEeee------CCCCccCcHHHHHHHHHcCCCCCC
Q 025257 192 VWKGTAF------GGFKSRSQVPWLVDKYMKKEIKVD 222 (255)
Q Consensus 192 ~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 222 (255)
++.++.. ......+.++++++++++|++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~ 193 (198)
T 1pqw_A 157 SFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVL 193 (198)
T ss_dssp EEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred EEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCC
Confidence 8876533 111113567899999999997764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=99.03 E-value=6.8e-10 Score=92.20 Aligned_cols=138 Identities=20% Similarity=0.201 Sum_probs=94.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE--EeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
+++|+|+|+|++|+++++.++.+|+ +|+++++++++.+.+++.+... +++... .++.+.+. ++|+|++|+
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~DvVI~~~ 238 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS--AEIETAVA-----EADLLIGAV 238 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH--HHHHHHHH-----TCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCH--HHHHHHHc-----CCCEEEECC
Confidence 4899999999999999999999999 9999999999999998776543 343332 44544443 599999999
Q ss_pred CcHHH------HHHHHHHhccCCceEEEEccCCCCC-----ccccCchhhcc-CcEEEEeeeC-CCCc--------cCcH
Q 025257 149 GNVSV------MRAALECCHKGWGTSVIVGVAASGQ-----EISTRPFQLVT-GRVWKGTAFG-GFKS--------RSQV 207 (255)
Q Consensus 149 g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~~-----~~~~~~~~~~~-~~~~~g~~~~-~~~~--------~~~~ 207 (255)
+.+.. .+..++.++++ |+++.++...++. +.+++...+.. ++++.+.... .... ...+
T Consensus 239 ~~~~~~~~~li~~~~~~~~~~g-~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~ 317 (361)
T 1pjc_A 239 LVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTL 317 (361)
T ss_dssp CCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHH
T ss_pred CcCCCCCCeecCHHHHhhCCCC-CEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHH
Confidence 86542 46778899996 9999998754321 22333333333 7776664311 1000 1234
Q ss_pred HHHHHHHHcC
Q 025257 208 PWLVDKYMKK 217 (255)
Q Consensus 208 ~~~~~~~~~~ 217 (255)
+.+++++++|
T Consensus 318 ~~l~~l~~~G 327 (361)
T 1pjc_A 318 PYVVKLANQG 327 (361)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHhCC
Confidence 5667777766
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-11 Score=103.88 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=113.6
Q ss_pred CCCCCccccCCcccc------c---ccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhc---CCCC
Q 025257 3 NDRKSRFSINGKPIY------H---FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA---KVEP 70 (255)
Q Consensus 3 g~~~~~~~~~g~~v~------~---~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~ 70 (255)
|+|+..+.+ |+.++ + ....|++++|+..+...++++|++++.+.++.. .+..++|.++.... .-.+
T Consensus 89 ~~Glds~~v-Ge~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~l~ 166 (404)
T 1gpj_A 89 ASGLESMMV-GEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGSLH 166 (404)
T ss_dssp HTTTTSSST-TCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSCCT
T ss_pred ccCCCCCcC-CcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhcccc
Confidence 567777777 66541 1 112477899988888889999998887776653 47778887653222 1258
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF-DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+++|+|+|+|++|.++++.++..|+.+|+++++++++. ++++++|++ ++++ .++.+.+. ++|+|++|++
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~----~~l~~~l~-----~aDvVi~at~ 236 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRF----DELVDHLA-----RSDVVVSATA 236 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG----GGHHHHHH-----TCSEEEECCS
T ss_pred CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-eecH----HhHHHHhc-----CCCEEEEccC
Confidence 89999999999999999999999987899999998886 666788876 3432 33443332 6999999998
Q ss_pred cHHHH--HHHHHH--h--ccCCceEEEEccC
Q 025257 150 NVSVM--RAALEC--C--HKGWGTSVIVGVA 174 (255)
Q Consensus 150 ~~~~~--~~~~~~--l--~~~~G~~v~~g~~ 174 (255)
.+..+ ...+.. + +++ +.++.++..
T Consensus 237 ~~~~~~~~~~l~~~~lk~r~~-~~~v~vdia 266 (404)
T 1gpj_A 237 APHPVIHVDDVREALRKRDRR-SPILIIDIA 266 (404)
T ss_dssp SSSCCBCHHHHHHHHHHCSSC-CCEEEEECC
T ss_pred CCCceecHHHHHHHHHhccCC-CCEEEEEcc
Confidence 65422 144554 4 555 777777764
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6.1e-09 Score=87.16 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=95.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCC-------------Cc----hHHH
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDH-------------DK----PIQQ 131 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~-------------~~----~~~~ 131 (255)
++++|+|+|+|.+|+++++.++.+|+ +|+++++++++.+.++++|++.+ ++..+. .+ ...+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 249 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 249 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence 68999999999999999999999999 89999999999999988998754 233110 00 0112
Q ss_pred HHHhhcCCCccEEEecC---CcH--HH-HHHHHHHhccCCceEEEEccCCCCC-ccccCchhhcc-CcEEEEeeeCCCCc
Q 025257 132 VLVDLTDGGVDYSFECI---GNV--SV-MRAALECCHKGWGTSVIVGVAASGQ-EISTRPFQLVT-GRVWKGTAFGGFKS 203 (255)
Q Consensus 132 ~i~~~~~~~~d~v~d~~---g~~--~~-~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~ 203 (255)
.+.+... ++|+|++|+ |.+ .. .+..++.++++ +.++.++...++. ..+.+...+.. ++++.++.. . .
T Consensus 250 ~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g-~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~--~-p 324 (384)
T 1l7d_A 250 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTN--V-P 324 (384)
T ss_dssp HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSS--G-G
T ss_pred HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-CEEEEEecCCCCCeecccCCcEEEECCEEEEEeCC--C-c
Confidence 2333333 699999999 532 22 37788999997 9999998643221 11122223333 788877542 1 1
Q ss_pred cCcHHHHHHHHHcCCCC
Q 025257 204 RSQVPWLVDKYMKKEIK 220 (255)
Q Consensus 204 ~~~~~~~~~~~~~~~~~ 220 (255)
....+++.+++.++.+.
T Consensus 325 ~~~~~~a~~l~~~~~~~ 341 (384)
T 1l7d_A 325 SRVAADASPLFAKNLLN 341 (384)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhHHH
Confidence 23355677777776543
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-08 Score=84.56 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=75.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeC-CCCCCchHHHHHHhhcCCCccEEEec
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVN-PKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~-~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
++++|+|+|+|++|+++++.++..|+ +|+++++++++.+.+++ +|+....+ ... .++.+.+. ++|+|++|
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~--~~l~~~l~-----~aDvVi~~ 238 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSSA--YELEGAVK-----RADLVIGA 238 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECCH--HHHHHHHH-----HCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCCH--HHHHHHHc-----CCCEEEEC
Confidence 57899999999999999999999999 99999999999888876 67653222 222 34444333 58999999
Q ss_pred CCcHHH------HHHHHHHhccCCceEEEEccC
Q 025257 148 IGNVSV------MRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 148 ~g~~~~------~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++.+.. .+..++.++++ |.++.++..
T Consensus 239 ~~~p~~~t~~li~~~~l~~mk~g-~~iV~va~~ 270 (377)
T 2vhw_A 239 VLVPGAKAPKLVSNSLVAHMKPG-AVLVDIAID 270 (377)
T ss_dssp CCCTTSCCCCCBCHHHHTTSCTT-CEEEEGGGG
T ss_pred CCcCCCCCcceecHHHHhcCCCC-cEEEEEecC
Confidence 986653 47788999996 999999864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.8e-08 Score=81.97 Aligned_cols=98 Identities=23% Similarity=0.287 Sum_probs=72.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
++++|+|+|+|++|+.+++.++..|+ +|+++++++++.+.+++ +|.....+..+ ..++.+.+. ++|++++|+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~-~~~l~~~~~-----~~DvVi~~~ 237 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTAT-EANIKKSVQ-----HADLLIGAV 237 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECC-HHHHHHHHH-----HCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCC-HHHHHHHHh-----CCCEEEECC
Confidence 45899999999999999999999999 99999999998888765 77653233222 133444333 589999999
Q ss_pred CcHHH------HHHHHHHhccCCceEEEEccCC
Q 025257 149 GNVSV------MRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 149 g~~~~------~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+.+.. .+..++.++++ |+++.++...
T Consensus 238 g~~~~~~~~li~~~~l~~mk~g-g~iV~v~~~~ 269 (369)
T 2eez_A 238 LVPGAKAPKLVTRDMLSLMKEG-AVIVDVAVDQ 269 (369)
T ss_dssp C-------CCSCHHHHTTSCTT-CEEEECC---
T ss_pred CCCccccchhHHHHHHHhhcCC-CEEEEEecCC
Confidence 86541 46788899996 9999998754
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-08 Score=84.64 Aligned_cols=105 Identities=23% Similarity=0.305 Sum_probs=83.0
Q ss_pred hhhhhhHHHhhc-CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHH
Q 025257 55 VPTGLGAVWNTA-KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVL 133 (255)
Q Consensus 55 ~~ta~~~l~~~~-~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i 133 (255)
..++++++.+.. ...+|++|+|.|.|.+|+.+++.++..|+ +|+++++++++.+.+++.|++ +++ +.+.+
T Consensus 257 ~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~~-------l~e~l 327 (494)
T 3ce6_A 257 RHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VVT-------VEEAI 327 (494)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC-------HHHHG
T ss_pred hhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Eec-------HHHHH
Confidence 345555543322 27899999999999999999999999999 999999999998888899986 321 22222
Q ss_pred HhhcCCCccEEEecCCcHHHHH-HHHHHhccCCceEEEEccC
Q 025257 134 VDLTDGGVDYSFECIGNVSVMR-AALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 134 ~~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~ 174 (255)
.++|+|+++++....+. ..++.++++ |+++.+|..
T Consensus 328 -----~~aDvVi~atgt~~~i~~~~l~~mk~g-gilvnvG~~ 363 (494)
T 3ce6_A 328 -----GDADIVVTATGNKDIIMLEHIKAMKDH-AILGNIGHF 363 (494)
T ss_dssp -----GGCSEEEECSSSSCSBCHHHHHHSCTT-CEEEECSSS
T ss_pred -----hCCCEEEECCCCHHHHHHHHHHhcCCC-cEEEEeCCC
Confidence 16899999999876555 788999997 999999874
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.2e-08 Score=80.61 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=83.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCC---C--------CchH----HHHH
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKD---H--------DKPI----QQVL 133 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~---~--------~~~~----~~~i 133 (255)
++++|+|+|+|.+|+++++.++.+|+ +|+++++++++.+.++++|++.+. +..+ . ..++ .+.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 249 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF 249 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence 57899999999999999999999999 999999999999999899987542 2110 0 0111 1123
Q ss_pred HhhcCCCccEEEecCCcH-----HH-HHHHHHHhccCCceEEEEccCCCCCccccC--chh-hc-cCcEEEEee
Q 025257 134 VDLTDGGVDYSFECIGNV-----SV-MRAALECCHKGWGTSVIVGVAASGQEISTR--PFQ-LV-TGRVWKGTA 197 (255)
Q Consensus 134 ~~~~~~~~d~v~d~~g~~-----~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~--~~~-~~-~~~~~~g~~ 197 (255)
.+... ++|+|+++++.+ .. .+..++.++++ +.++.++...++ ..+.. ..+ +. +++++.|..
T Consensus 250 ~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g-~vIVdva~~~Gg-~v~~~~~~~p~~~~~gv~i~g~~ 320 (401)
T 1x13_A 250 AAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAG-SVIVDLAAQNGG-NCEYTVPGEIFTTENGVKVIGYT 320 (401)
T ss_dssp HHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGTC-SBTTCCTTSEEECTTSCEEECCS
T ss_pred HHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-cEEEEEcCCCCC-CcCcccCCCceEEECCEEEEeeC
Confidence 33322 599999995332 21 26788999997 999999864222 22222 121 33 388888764
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.9e-08 Score=75.34 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=73.5
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-c--EEeCCCCCCchHHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGV-T--EFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~i~ 134 (255)
+.....++++++||..|+| .|..+..+++. +. +|++++.+++..+.+++ .+. + .++. .+. .
T Consensus 83 ~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~----~ 150 (248)
T 2yvl_A 83 IALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFN-----VDF----K 150 (248)
T ss_dssp HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHHHHHHHHHHTTCCTTEEEEC-----SCT----T
T ss_pred HHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEE-----cCh----h
Confidence 4567788999999999998 58899999998 77 99999999998888765 342 1 1221 111 1
Q ss_pred hhc-CC-CccEEEecCCcH-HHHHHHHHHhccCCceEEEEcc
Q 025257 135 DLT-DG-GVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 135 ~~~-~~-~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.. .+ .+|+|+...+.+ ..++.+.+.++++ |+++....
T Consensus 151 ~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 191 (248)
T 2yvl_A 151 DAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG-APVGFLLP 191 (248)
T ss_dssp TSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT-CEEEEEES
T ss_pred hcccCCCcccEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 112 23 799999877765 5589999999997 99988754
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=62.86 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=66.0
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcEEeCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
...++++|+|.|+|.+|..+++.++..|. +|+++++++++.+.++ +.|...+.... .+ .+.+.+....++|+|+
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~~~d~---~~-~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTVVGDA---AE-FETLKECGMEKADMVF 89 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEEESCT---TS-HHHHHTTTGGGCSEEE
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEEEecC---CC-HHHHHHcCcccCCEEE
Confidence 44577899999999999999999999999 9999999999888877 67765443221 11 1233332112799999
Q ss_pred ecCCcHHHHHHHHHHhcc
Q 025257 146 ECIGNVSVMRAALECCHK 163 (255)
Q Consensus 146 d~~g~~~~~~~~~~~l~~ 163 (255)
.|++.......+...++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~ 107 (155)
T 2g1u_A 90 AFTNDDSTNFFISMNARY 107 (155)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHHH
Confidence 999987755555555554
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-06 Score=58.30 Aligned_cols=92 Identities=20% Similarity=0.154 Sum_probs=64.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
++.+|+|+|+|.+|..+++.+...| . +|+++++++++.+.++..+...+ .|..+ . +.+.+... ++|+|+++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~~~~d~~~--~---~~~~~~~~-~~d~vi~~ 76 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGVATKQVDAKD--E---AGLAKALG-GFDAVISA 76 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTCEEEECCTTC--H---HHHHHHTT-TCSEEEEC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCCcEEEecCCC--H---HHHHHHHc-CCCEEEEC
Confidence 3468999999999999999999999 6 99999999999888877776543 33332 2 23333322 69999999
Q ss_pred CCcHHHHHHHHHH-hccCCceEEE
Q 025257 148 IGNVSVMRAALEC-CHKGWGTSVI 170 (255)
Q Consensus 148 ~g~~~~~~~~~~~-l~~~~G~~v~ 170 (255)
++... ....... ...+ ...+.
T Consensus 77 ~~~~~-~~~~~~~~~~~g-~~~~~ 98 (118)
T 3ic5_A 77 APFFL-TPIIAKAAKAAG-AHYFD 98 (118)
T ss_dssp SCGGG-HHHHHHHHHHTT-CEEEC
T ss_pred CCchh-hHHHHHHHHHhC-CCEEE
Confidence 98766 3444444 4443 44443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.8e-07 Score=74.25 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=74.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCC-CCCch------------HHHHHHh
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPK-DHDKP------------IQQVLVD 135 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~-~~~~~------------~~~~i~~ 135 (255)
++.+|+|+|+|.+|+.+++.++.+|+ +|++.++++++.+.++++|++.+- +.. +.... -.+.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e 261 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED 261 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence 67899999999999999999999999 999999999999999999976431 100 00000 1112222
Q ss_pred hcCCCccEEEecCCcH-----H-HHHHHHHHhccCCceEEEEccCCC
Q 025257 136 LTDGGVDYSFECIGNV-----S-VMRAALECCHKGWGTSVIVGVAAS 176 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~~-----~-~~~~~~~~l~~~~G~~v~~g~~~~ 176 (255)
... .+|+|+.++..+ . ..+..++.++++ +.++.++...+
T Consensus 262 ~l~-~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpG-sVIVDvA~d~G 306 (381)
T 3p2y_A 262 AIT-KFDIVITTALVPGRPAPRLVTAAAATGMQPG-SVVVDLAGETG 306 (381)
T ss_dssp HHT-TCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGT
T ss_pred HHh-cCCEEEECCCCCCcccceeecHHHHhcCCCC-cEEEEEeCCCC
Confidence 222 699999986332 1 247889999996 99999976443
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-07 Score=67.70 Aligned_cols=107 Identities=10% Similarity=0.059 Sum_probs=75.0
Q ss_pred chhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhcCCcEEeCCCCCCchHHHH
Q 025257 54 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AKNFGVTEFVNPKDHDKPIQQV 132 (255)
Q Consensus 54 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~ 132 (255)
+++++++++ +......+++|+|+|+|.+|.+.++.++..|+ +|++.++++++.+. +++++.+.. .. .++.+.
T Consensus 5 ~~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~~~-~~----~~~~~~ 77 (144)
T 3oj0_A 5 KVSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYEYV-LI----NDIDSL 77 (144)
T ss_dssp CCSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCEEE-EC----SCHHHH
T ss_pred cccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCceE-ee----cCHHHH
Confidence 445666664 33444458999999999999999999988999 79999999888766 466775432 22 334444
Q ss_pred HHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 133 LVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 133 i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+. ++|+|+.|++.+... .....++++ +.++.++..
T Consensus 78 ~~-----~~Divi~at~~~~~~-~~~~~l~~g-~~vid~~~p 112 (144)
T 3oj0_A 78 IK-----NNDVIITATSSKTPI-VEERSLMPG-KLFIDLGNP 112 (144)
T ss_dssp HH-----TCSEEEECSCCSSCS-BCGGGCCTT-CEEEECCSS
T ss_pred hc-----CCCEEEEeCCCCCcE-eeHHHcCCC-CEEEEccCC
Confidence 43 589999999976422 222667775 788877663
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-06 Score=72.52 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=73.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCC-------------CC-CCchH----HH
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP-------------KD-HDKPI----QQ 131 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~-------------~~-~~~~~----~~ 131 (255)
++.+|+|+|+|.+|+.+++.++.+|+ +|++.++++++.+.++++|++.+... .. ..+++ .+
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~ 267 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA 267 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence 56899999999999999999999999 99999999999999999987632110 00 00111 11
Q ss_pred HHHhhcCCCccEEEecCCcH-----H-HHHHHHHHhccCCceEEEEccC
Q 025257 132 VLVDLTDGGVDYSFECIGNV-----S-VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 132 ~i~~~~~~~~d~v~d~~g~~-----~-~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.+.+... ++|+|+.|+..+ . ..+..++.++++ +.++.++..
T Consensus 268 ~l~e~l~-~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~G-sVIVDvA~d 314 (405)
T 4dio_A 268 LVAEHIA-KQDIVITTALIPGRPAPRLVTREMLDSMKPG-SVVVDLAVE 314 (405)
T ss_dssp HHHHHHH-TCSEEEECCCCSSSCCCCCBCHHHHTTSCTT-CEEEETTGG
T ss_pred HHHHHhc-CCCEEEECCcCCCCCCCEEecHHHHhcCCCC-CEEEEEeCC
Confidence 2222221 699999986422 1 247889999996 999999753
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=69.47 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=72.9
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCcEEeCCCCCCchHHHHHHhhcCC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTEFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
...+++++++||..|+|+.|..++.+++..|+ +|++++.+++..+.+++. |.+.+ .... .+.. ++.++
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v-~~v~--gDa~----~l~d~ 187 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGV-NVIT--GDET----VIDGL 187 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSE-EEEE--SCGG----GGGGC
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCe-EEEE--Cchh----hCCCC
Confidence 35789999999999998877888888888899 999999999988888643 54222 1111 1111 12234
Q ss_pred CccEEEecCCcH---HHHHHHHHHhccCCceEEEEcc
Q 025257 140 GVDYSFECIGNV---SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 140 ~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.||+|+.+...+ ..++.+.+.|++| |+++....
T Consensus 188 ~FDvV~~~a~~~d~~~~l~el~r~LkPG-G~Lvv~~~ 223 (298)
T 3fpf_A 188 EFDVLMVAALAEPKRRVFRNIHRYVDTE-TRIIYRTY 223 (298)
T ss_dssp CCSEEEECTTCSCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred CcCEEEECCCccCHHHHHHHHHHHcCCC-cEEEEEcC
Confidence 899999655442 4589999999997 99987654
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.5e-06 Score=69.73 Aligned_cols=101 Identities=27% Similarity=0.306 Sum_probs=77.0
Q ss_pred hhHHHhhc-CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhc
Q 025257 59 LGAVWNTA-KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 59 ~~~l~~~~-~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
+.++.+.. ..-.|++|+|.|.|.+|..+++.++..|+ +|+++++++.+...+...|... .++.+.+.
T Consensus 207 ~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~v--------~~Leeal~--- 274 (435)
T 3gvp_A 207 LDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFRL--------VKLNEVIR--- 274 (435)
T ss_dssp HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE--------CCHHHHTT---
T ss_pred HHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCEe--------ccHHHHHh---
Confidence 33443433 34589999999999999999999999999 9999999887776676677532 22333232
Q ss_pred CCCccEEEecCCcHHHHH-HHHHHhccCCceEEEEccC
Q 025257 138 DGGVDYSFECIGNVSVMR-AALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~ 174 (255)
..|+++.|.|....+. ..+..++++ +.++.+|..
T Consensus 275 --~ADIVi~atgt~~lI~~e~l~~MK~g-ailINvgrg 309 (435)
T 3gvp_A 275 --QVDIVITCTGNKNVVTREHLDRMKNS-CIVCNMGHS 309 (435)
T ss_dssp --TCSEEEECSSCSCSBCHHHHHHSCTT-EEEEECSST
T ss_pred --cCCEEEECCCCcccCCHHHHHhcCCC-cEEEEecCC
Confidence 5899999988766554 888999997 999988764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.2e-05 Score=57.50 Aligned_cols=87 Identities=18% Similarity=0.287 Sum_probs=64.8
Q ss_pred CCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCC-CccEEEec
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDG-GVDYSFEC 147 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~-~~d~v~d~ 147 (255)
+++|+|.|+|.+|..+++.++.. |. +|+++++++++.+.+++.|...+. |..+ .+ .+.+.++- ++|+|+.+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~~--~~---~l~~~~~~~~ad~vi~~ 112 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDATD--PD---FWERILDTGHVKLVLLA 112 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTTC--HH---HHHTBCSCCCCCEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCCC--HH---HHHhccCCCCCCEEEEe
Confidence 56899999999999999999998 99 999999999999999888876554 3332 22 23343222 79999999
Q ss_pred CCcHHHHHHHHHHhcc
Q 025257 148 IGNVSVMRAALECCHK 163 (255)
Q Consensus 148 ~g~~~~~~~~~~~l~~ 163 (255)
++.......+...++.
T Consensus 113 ~~~~~~~~~~~~~~~~ 128 (183)
T 3c85_A 113 MPHHQGNQTALEQLQR 128 (183)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHH
Confidence 9976644444444444
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=64.06 Aligned_cols=93 Identities=26% Similarity=0.265 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
-++++|+|.|.|.+|..+++.++..|+ +|++.++++++.+.++++|+.. ++. .++.+.+. .+|+|+.++
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~~~----~~l~~~l~-----~aDvVi~~~ 221 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEP-FHI----SKAAQELR-----DVDVCINTI 221 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEE-EEG----GGHHHHTT-----TCSEEEECC
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCee-cCh----hhHHHHhc-----CCCEEEECC
Confidence 478999999999999999999999999 9999999988877777788753 221 23333222 589999998
Q ss_pred CcHHHHHHHHHHhccCCceEEEEcc
Q 025257 149 GNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.....-+..+..++++ +.++.++.
T Consensus 222 p~~~i~~~~l~~mk~~-~~lin~ar 245 (293)
T 3d4o_A 222 PALVVTANVLAEMPSH-TFVIDLAS 245 (293)
T ss_dssp SSCCBCHHHHHHSCTT-CEEEECSS
T ss_pred ChHHhCHHHHHhcCCC-CEEEEecC
Confidence 7543224677889996 89988875
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.06 E-value=9e-05 Score=52.56 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.++|+|.|.|.+|..+++.++..|. +|+++++++++.+.+++.|...+. |..+ ++. +++..-..+|+++-+++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~gd~~~--~~~---l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVLGNAAN--EEI---MQLAHLECAKWLILTIP 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEESCTTS--HHH---HHHTTGGGCSEEEECCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEECCCCC--HHH---HHhcCcccCCEEEEECC
Confidence 4689999999999999999999999 999999999999999888886554 3332 332 33221127999999998
Q ss_pred cHHHHH---HHHHHhccCCceEEE
Q 025257 150 NVSVMR---AALECCHKGWGTSVI 170 (255)
Q Consensus 150 ~~~~~~---~~~~~l~~~~G~~v~ 170 (255)
...... ...+.+.+. .+++.
T Consensus 81 ~~~~n~~~~~~a~~~~~~-~~iia 103 (140)
T 3fwz_A 81 NGYEAGEIVASARAKNPD-IEIIA 103 (140)
T ss_dssp CHHHHHHHHHHHHHHCSS-SEEEE
T ss_pred ChHHHHHHHHHHHHHCCC-CeEEE
Confidence 765222 334444554 55544
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=62.78 Aligned_cols=103 Identities=24% Similarity=0.325 Sum_probs=71.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+|+.+||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ +++|... ..|-.+ +.+..+.+.+... |++|
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~iD 105 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSAN-LAELDRLYEKVKAEAGRID 105 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSCEE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 6789999997 8999999999999999 999999999887765 5666432 224333 1222222222221 3799
Q ss_pred EEEecCCcHH-------------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 143 YSFECIGNVS-------------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 143 ~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+.+++.|... ..+..++.++.+ |+++.++...
T Consensus 106 iLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-G~IInisS~~ 162 (273)
T 4fgs_A 106 VLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-SSVVLTGSTA 162 (273)
T ss_dssp EEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEECCGG
T ss_pred EEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CeEEEEeehh
Confidence 9999888411 245556677886 9999987643
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=62.35 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=68.8
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-EEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
-.|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+..+.-.+. ...|-.+ ++-.+++-+.. |++|+.++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~-g~iDiLVN 84 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDITD--SQRLQRLFEAL-PRLDVLVN 84 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTTC--HHHHHHHHHHC-SCCSEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCCC--HHHHHHHHHhc-CCCCEEEE
Confidence 36899999997 8999999999999999 999999987766543222221 1234333 33333333322 37999999
Q ss_pred cCCcHH-----------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 147 CIGNVS-----------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 147 ~~g~~~-----------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+.|... ..+..+..++.++|++|.+++..
T Consensus 85 NAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~ 136 (242)
T 4b79_A 85 NAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMY 136 (242)
T ss_dssp CCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGG
T ss_pred CCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 988411 13445556654349999997753
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.8e-05 Score=60.02 Aligned_cols=103 Identities=18% Similarity=0.111 Sum_probs=67.8
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE---eCCCCCCchHHHHHHhhcC--CCccEE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF---VNPKDHDKPIQQVLVDLTD--GGVDYS 144 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v---i~~~~~~~~~~~~i~~~~~--~~~d~v 144 (255)
+++|||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.+.+.... .|-.+ +....+.+.+... |++|+.
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~g~iDiL 79 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVAD-PLTLKKFVEYAMEKLQRIDVL 79 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 478999997 8999999999999999 99999999888877765543321 23332 1222222222221 379999
Q ss_pred EecCCcHH-------------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 145 FECIGNVS-------------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 145 ~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+++.|... ..+.+++.+..++|+++.+++..
T Consensus 80 VNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~ 135 (247)
T 3ged_A 80 VNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTR 135 (247)
T ss_dssp EECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecc
Confidence 99887311 13344445543249999987653
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.7e-05 Score=65.28 Aligned_cols=93 Identities=23% Similarity=0.227 Sum_probs=73.0
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
..-.|++|+|.|.|.+|..+++.++..|+ +|+++++++.+...+...|... .++.+.+. ..|+|+.
T Consensus 243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~v--------v~LeElL~-----~ADIVv~ 308 (464)
T 3n58_A 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFEV--------VTLDDAAS-----TADIVVT 308 (464)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEE--------CCHHHHGG-----GCSEEEE
T ss_pred CcccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCcee--------ccHHHHHh-----hCCEEEE
Confidence 34588999999999999999999999999 9999998887766666667642 22333332 4899999
Q ss_pred cCCcHHHH-HHHHHHhccCCceEEEEccC
Q 025257 147 CIGNVSVM-RAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 147 ~~g~~~~~-~~~~~~l~~~~G~~v~~g~~ 174 (255)
+.+....+ ...+..++++ +.++.+|-.
T Consensus 309 atgt~~lI~~e~l~~MK~G-AILINvGRg 336 (464)
T 3n58_A 309 TTGNKDVITIDHMRKMKDM-CIVGNIGHF 336 (464)
T ss_dssp CCSSSSSBCHHHHHHSCTT-EEEEECSSS
T ss_pred CCCCccccCHHHHhcCCCC-eEEEEcCCC
Confidence 99877644 6888999996 898888764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.8e-05 Score=62.70 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
-++++|+|.|+|.+|..+++.++..|+ +|++.++++++.+.+.+.|.. .++. .++.+.+ ..+|+|+.++
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~----~~l~~~l-----~~aDvVi~~~ 223 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHT----DELKEHV-----KDIDICINTI 223 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEG----GGHHHHS-----TTCSEEEECC
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEch----hhHHHHh-----hCCCEEEECC
Confidence 468899999999999999999999999 999999998887777777764 2221 2333222 1589999998
Q ss_pred CcHHHHHHHHHHhccCCceEEEEccC
Q 025257 149 GNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 149 g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.....-+..+..++++ +.++.++..
T Consensus 224 p~~~i~~~~~~~mk~g-~~lin~a~g 248 (300)
T 2rir_A 224 PSMILNQTVLSSMTPK-TLILDLASR 248 (300)
T ss_dssp SSCCBCHHHHTTSCTT-CEEEECSST
T ss_pred ChhhhCHHHHHhCCCC-CEEEEEeCC
Confidence 8644224567888996 899888763
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00011 Score=52.10 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=58.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
..+++|.|+|.+|..+++.+...|. +|+++++++++.+.+++.|...+. |..+ ++ .+++..-.++|+++.+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~gd~~~--~~---~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVIADPTD--ES---FYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEECCTTC--HH---HHHHSCCTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEECCCCC--HH---HHHhCCcccCCEEEEecC
Confidence 4679999999999999999999999 999999999999998888875443 3332 32 233332227999999999
Q ss_pred cHH
Q 025257 150 NVS 152 (255)
Q Consensus 150 ~~~ 152 (255)
...
T Consensus 80 ~~~ 82 (141)
T 3llv_A 80 DDE 82 (141)
T ss_dssp CHH
T ss_pred CHH
Confidence 654
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.4e-05 Score=66.52 Aligned_cols=98 Identities=26% Similarity=0.333 Sum_probs=74.1
Q ss_pred HHhhcCC-CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCC
Q 025257 62 VWNTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 62 l~~~~~~-~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~ 140 (255)
+.+.... -.|++++|+|+|++|.+.++.++..|+ +|+++++++.+.+.+...|++ +.+.. +.. ..
T Consensus 255 i~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~le-----------e~~-~~ 320 (488)
T 3ond_A 255 LMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTLE-----------DVV-SE 320 (488)
T ss_dssp HHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCGG-----------GTT-TT
T ss_pred HHHHcCCcccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCHH-----------HHH-Hh
Confidence 3343343 478999999999999999999999999 999999998888777777753 22111 111 16
Q ss_pred ccEEEecCCcHHHH-HHHHHHhccCCceEEEEccC
Q 025257 141 VDYSFECIGNVSVM-RAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 141 ~d~v~d~~g~~~~~-~~~~~~l~~~~G~~v~~g~~ 174 (255)
+|+++++.|....+ ...++.++++ +.++.+|..
T Consensus 321 aDvVi~atG~~~vl~~e~l~~mk~g-aiVvNaG~~ 354 (488)
T 3ond_A 321 ADIFVTTTGNKDIIMLDHMKKMKNN-AIVCNIGHF 354 (488)
T ss_dssp CSEEEECSSCSCSBCHHHHTTSCTT-EEEEESSST
T ss_pred cCEEEeCCCChhhhhHHHHHhcCCC-eEEEEcCCC
Confidence 89999999976644 3478889996 888888864
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=4.9e-05 Score=53.85 Aligned_cols=76 Identities=21% Similarity=0.385 Sum_probs=55.3
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+++|+|+|+|.+|...++.+...|. +|+++++++++.+.+++.+...+.... .+ .+.+.+..-+++|+++.+++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~d~---~~-~~~l~~~~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANA---TE-ENELLSLGIRNFEYVIVAIGA 80 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSEEEECCT---TC-HHHHHTTTGGGCSEEEECCCS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCEEEEeCC---CC-HHHHHhcCCCCCCEEEECCCC
Confidence 4679999999999999999999998 999999988887777666654333221 11 233433311279999999997
Q ss_pred H
Q 025257 151 V 151 (255)
Q Consensus 151 ~ 151 (255)
.
T Consensus 81 ~ 81 (144)
T 2hmt_A 81 N 81 (144)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=57.12 Aligned_cols=104 Identities=28% Similarity=0.312 Sum_probs=68.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcEE---eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~~--~ 139 (255)
+|+++||+|+ +++|.+.++.+...|+ +|++.++++++.+.. ++.|.... .|-.+ +++..+.+.+... |
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTD-ELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC-HHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHCC
Confidence 5789999987 8999999999999999 999999988776554 34454322 23222 1233333333322 3
Q ss_pred CccEEEecCCcHH-------------------------HHHHHHHHh--ccCCceEEEEccCC
Q 025257 140 GVDYSFECIGNVS-------------------------VMRAALECC--HKGWGTSVIVGVAA 175 (255)
Q Consensus 140 ~~d~v~d~~g~~~-------------------------~~~~~~~~l--~~~~G~~v~~g~~~ 175 (255)
+.|+.+++.|... ..+..++.+ +.++|+++.++...
T Consensus 86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~ 148 (255)
T 4g81_D 86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLT 148 (255)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehh
Confidence 7999999988411 134555555 22238999998754
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00013 Score=56.50 Aligned_cols=78 Identities=14% Similarity=0.243 Sum_probs=52.8
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCC--cE-EeCCCCCCchHHHHHHhhcC--CCccE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGV--TE-FVNPKDHDKPIQQVLVDLTD--GGVDY 143 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~--~~-vi~~~~~~~~~~~~i~~~~~--~~~d~ 143 (255)
++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +++. .. ..|-.+ ++.+.+.+.+... +.+|+
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id~ 80 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAH-HEDVDVAFAAAVEWGGLPEL 80 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTS-HHHHHHHHHHHHHHHCSCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCC-HHHHHHHHHHHHHhcCCCcE
Confidence 578999997 9999999999999999 9999999988776653 3332 21 123333 1223322322211 37999
Q ss_pred EEecCCc
Q 025257 144 SFECIGN 150 (255)
Q Consensus 144 v~d~~g~ 150 (255)
++++.|.
T Consensus 81 lvnnAg~ 87 (235)
T 3l6e_A 81 VLHCAGT 87 (235)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9998884
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00011 Score=57.70 Aligned_cols=103 Identities=15% Similarity=0.058 Sum_probs=66.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH---HhcCC--cE-EeCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA---KNFGV--TE-FVNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~---~~~g~--~~-vi~~~~~~~~~~~~i~~~~~--~~ 140 (255)
+|+.+||+|+ +++|.+.++.+...|+ +|++.++++++.+.+ .+.+. .. ..|-.+ +.+..+.+.+... |+
T Consensus 6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~G~ 83 (258)
T 4gkb_A 6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQD-DAQCRDAVAQTIATFGR 83 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence 5789999997 8999999999999999 999999887765444 33342 22 234333 1223222322221 37
Q ss_pred ccEEEecCCcH---------H---------------HHHHHHHHhccCCceEEEEccC
Q 025257 141 VDYSFECIGNV---------S---------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 141 ~d~v~d~~g~~---------~---------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+|+++++.|.. . ..+..++.++.++|++|.+++.
T Consensus 84 iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~ 141 (258)
T 4gkb_A 84 LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSK 141 (258)
T ss_dssp CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCT
T ss_pred CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeeh
Confidence 99999998841 1 1344555665434999999764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=97.77 E-value=9.3e-05 Score=58.12 Aligned_cols=103 Identities=20% Similarity=0.235 Sum_probs=67.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +++... ..|-.+ +....+.+.+... +++|
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 84 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIAD-LNEIAVLGAAAGQTLGAID 84 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence 5689999997 9999999999999999 9999999988777663 344321 123333 1222222222211 3799
Q ss_pred EEEecCCcH----------H---------------HHHHHHHHhccCCceEEEEccCC
Q 025257 143 YSFECIGNV----------S---------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 143 ~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+++++.|.. . ..+..+..++.+ |+++.++...
T Consensus 85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~ 141 (255)
T 4eso_A 85 LLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG-GSIVFTSSVA 141 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCGG
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CEEEEECChh
Confidence 999988741 1 123344455665 8999997653
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00019 Score=56.45 Aligned_cols=78 Identities=12% Similarity=0.244 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC---cE-EeCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV---TE-FVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g--~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~---~~-vi~~~~~~~~~~~~i~~~~~ 138 (255)
+|+++||+|+ | ++|.+.++.+...|+ +|++++++++..+.+. +.+. .. ..|-.+ +++..+.+.+...
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS-DEEVINGFEQIGK 82 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC-HHHHHHHHHHHHH
Confidence 5789999996 5 899999999999999 9999999987766553 3332 11 134333 1233322322211
Q ss_pred --CCccEEEecCC
Q 025257 139 --GGVDYSFECIG 149 (255)
Q Consensus 139 --~~~d~v~d~~g 149 (255)
|.+|+++++.|
T Consensus 83 ~~G~iD~lvnnAg 95 (256)
T 4fs3_A 83 DVGNIDGVYHSIA 95 (256)
T ss_dssp HHCCCSEEEECCC
T ss_pred HhCCCCEEEeccc
Confidence 37999999877
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.75 E-value=6.9e-05 Score=58.00 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=68.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-cEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV-TEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
.+.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+.++ ..+.- + -. +.+.+..+ ++|+|+++
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~-D---l~--~~~~~~~~-~~D~vi~~ 91 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVA-N---LE--EDFSHAFA-SIDAVVFA 91 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEEC-C---TT--SCCGGGGT-TCSEEEEC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEc-c---cH--HHHHHHHc-CCCEEEEC
Confidence 4689999998 9999999999999999 99999999998888877676 54321 1 11 23333333 69999999
Q ss_pred CCcHH-------------HHHHHHHHhcc-CCceEEEEccCCC
Q 025257 148 IGNVS-------------VMRAALECCHK-GWGTSVIVGVAAS 176 (255)
Q Consensus 148 ~g~~~-------------~~~~~~~~l~~-~~G~~v~~g~~~~ 176 (255)
.|... ....+++.++. +.++++.++....
T Consensus 92 ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~ 134 (236)
T 3e8x_A 92 AGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT 134 (236)
T ss_dssp CCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred CCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 98521 12233333332 2268999887643
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00027 Score=55.73 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-Ch--HHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC---cE-EeCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GT--VGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV---TE-FVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~--vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~---~~-vi~~~~~~~~~~~~i~~~~~ 138 (255)
.++++||+|+ |. +|.+.++.+...|+ +|++++++++..+.++ +.+. .. ..|-.+ +..+.+.+.+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN-DAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS-SHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC-HHHHHHHHHHHHH
Confidence 4689999986 65 99999999999999 9999998875544443 2332 21 234333 2333333333222
Q ss_pred --CCccEEEecCCc
Q 025257 139 --GGVDYSFECIGN 150 (255)
Q Consensus 139 --~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 84 ~~g~id~li~~Ag~ 97 (266)
T 3oig_A 84 QVGVIHGIAHCIAF 97 (266)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HhCCeeEEEEcccc
Confidence 269999998873
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=56.43 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=54.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v 144 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ +++|+..+ .|-.+ ++.+.+.+.+... +++|++
T Consensus 4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id~l 81 (245)
T 1uls_A 4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD-PASVERGFAEALAHLGRLDGV 81 (245)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC-HHHHHHHHHHHHHHHSSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 4678999997 9999999999999999 999999988776655 34564332 34333 1223332332211 369999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+++.|.
T Consensus 82 vn~Ag~ 87 (245)
T 1uls_A 82 VHYAGI 87 (245)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999883
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00061 Score=50.82 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=66.5
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCC---------CeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHh
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGA---------SRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVD 135 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~---------~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~ 135 (255)
..++++++||..|+|+ |..+..+++..|. .+|++++.++... .-++. .+ ..+-......+.+.+
T Consensus 18 ~~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~----~~~~~-~~~~~d~~~~~~~~~~~~ 91 (196)
T 2nyu_A 18 QILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP----LEGAT-FLCPADVTDPRTSQRILE 91 (196)
T ss_dssp CCCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC----CTTCE-EECSCCTTSHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc----CCCCe-EEEeccCCCHHHHHHHHH
Confidence 3468899999999987 8899999999873 3899999887431 01122 22 111101334444555
Q ss_pred hcCC-CccEEEe-----cCCcH------------HHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDG-GVDYSFE-----CIGNV------------SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~-~~d~v~d-----~~g~~------------~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
..++ .||+|+. +++.. ..++.+.+.|+++ |+++....
T Consensus 92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 146 (196)
T 2nyu_A 92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKTW 146 (196)
T ss_dssp HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence 4544 8999993 33321 3477888999997 99887643
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00013 Score=61.19 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=70.7
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
.-.|++|+|.|.|.+|...++.++..|+ +|+++++++.+...+...|... .++.+.+. ..|+++.+
T Consensus 208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~--------~sL~eal~-----~ADVVilt 273 (436)
T 3h9u_A 208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQV--------LLVEDVVE-----EAHIFVTT 273 (436)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE--------CCHHHHTT-----TCSEEEEC
T ss_pred cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCee--------cCHHHHHh-----hCCEEEEC
Confidence 3478999999999999999999999999 9999999887777777777642 22333332 58999988
Q ss_pred CCcHHHHH-HHHHHhccCCceEEEEcc
Q 025257 148 IGNVSVMR-AALECCHKGWGTSVIVGV 173 (255)
Q Consensus 148 ~g~~~~~~-~~~~~l~~~~G~~v~~g~ 173 (255)
.+....+. ..+..++++ ..++.+|-
T Consensus 274 ~gt~~iI~~e~l~~MK~g-AIVINvgR 299 (436)
T 3h9u_A 274 TGNDDIITSEHFPRMRDD-AIVCNIGH 299 (436)
T ss_dssp SSCSCSBCTTTGGGCCTT-EEEEECSS
T ss_pred CCCcCccCHHHHhhcCCC-cEEEEeCC
Confidence 88655343 677888996 88888864
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00056 Score=52.20 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=64.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+...+...+ .|..+ .+. +.+ +++|+|+++.|.
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~d--~~~-~~~-----~~~d~vi~~ag~ 72 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPLV--LTE-ADL-----DSVDAVVDALSV 72 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGGG--CCH-HHH-----TTCSEEEECCCC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEeccccc--ccH-hhc-----ccCCEEEECCcc
Confidence 5899998 9999999999999999 99999999888776655555433 23332 222 222 269999999986
Q ss_pred H----------HHHHHHHHHhccCCceEEEEcc
Q 025257 151 V----------SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 151 ~----------~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
. .....+++.++..+++++.++.
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS 105 (224)
T 3h2s_A 73 PWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG 105 (224)
T ss_dssp CTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred CCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 2 1234556665543278888854
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.68 E-value=8.9e-05 Score=56.19 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=70.3
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-E--EeCCCCCCchHHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-E--FVNPKDHDKPIQQVLV 134 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~--vi~~~~~~~~~~~~i~ 134 (255)
+.....+.++++||-.|+|. |..++.+++. +. +|++++.+++..+.+++ .|.+ . ++..+- .+ .+.
T Consensus 47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~--~~---~~~ 118 (204)
T 3njr_A 47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA--PA---ALA 118 (204)
T ss_dssp HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT--TG---GGT
T ss_pred HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch--hh---hcc
Confidence 44667789999999999986 8888888887 87 99999999988877753 4543 2 222111 11 111
Q ss_pred hhcCCCccEEEecCCc-HHHHHHHHHHhccCCceEEEEcc
Q 025257 135 DLTDGGVDYSFECIGN-VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~-~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.. +.||+|+...+. ...++.+.+.|+++ |+++....
T Consensus 119 ~~--~~~D~v~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 155 (204)
T 3njr_A 119 DL--PLPEAVFIGGGGSQALYDRLWEWLAPG-TRIVANAV 155 (204)
T ss_dssp TS--CCCSEEEECSCCCHHHHHHHHHHSCTT-CEEEEEEC
T ss_pred cC--CCCCEEEECCcccHHHHHHHHHhcCCC-cEEEEEec
Confidence 11 269999965442 32588999999997 99887654
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00024 Score=55.45 Aligned_cols=78 Identities=27% Similarity=0.334 Sum_probs=54.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEE---eCCCCCCchHHH---HHHhhcCCCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF---VNPKDHDKPIQQ---VLVDLTDGGV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v---i~~~~~~~~~~~---~i~~~~~~~~ 141 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++.... .|-.+ ++...+ .+.+.. +++
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~-g~i 81 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISD-PGSVKALFAEIQALT-GGI 81 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTC-HHHHHHHHHHHHHHH-SCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHC-CCC
Confidence 4689999997 8999999999999999 999999998877665 44554322 23222 122222 232222 379
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++++.|.
T Consensus 82 d~lv~nAg~ 90 (247)
T 3rwb_A 82 DILVNNASI 90 (247)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999883
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00012 Score=57.16 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcE---EeCCCCCCchHHHHHHhhcCCCcc
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE---FVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~---vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
-.++++|||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++.... ..|-.+ .+-.+.+.+.. +++|
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~-~~id 86 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLAN--KEECSNLISKT-SNLD 86 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS--HHHHHHHHHTC-SCCS
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCCC--HHHHHHHHHhc-CCCC
Confidence 457789999997 9999999999999999 9999999988777663 333222 123332 32222222222 3699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 87 ~li~~Ag~ 94 (249)
T 3f9i_A 87 ILVCNAGI 94 (249)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99999884
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00028 Score=55.22 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE-E--eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++... . .|-.+ ++.+.+.+.+... +.+|
T Consensus 5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id 82 (253)
T 1hxh_A 5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSS-EADWTLVMAAVQRRLGTLN 82 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTC-HHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4678999997 9999999999999999 999999988776655 3444321 1 23332 1223322332211 3699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 83 ~lv~~Ag~ 90 (253)
T 1hxh_A 83 VLVNNAGI 90 (253)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999873
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00038 Score=55.43 Aligned_cols=102 Identities=22% Similarity=0.273 Sum_probs=64.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHH----HHhcCCcE--E-eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDR----AKNFGVTE--F-VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~----~~~~g~~~--v-i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++ .+. +++.|... + .|-.+ .+.+.+.+.+...
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV-VEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4689999997 9999999999999999 99999987653 222 23445332 1 23332 1223222322211
Q ss_pred CCccEEEecCCcH----------H---------------HHHHHHHHhccCCceEEEEccC
Q 025257 139 GGVDYSFECIGNV----------S---------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 139 ~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++|+++++.|.. . ..+.+++.++.+ |+++.++..
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~ 165 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI 165 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEech
Confidence 3699999998831 1 124445555565 899999764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00084 Score=51.00 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=64.2
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+. .+...+ .|..+ .+. +.+ +++|+|+++.|.
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~~~~~D~~d--~~~-~~~-----~~~d~vi~~ag~ 71 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDINILQKDIFD--LTL-SDL-----SDQNVVVDAYGI 71 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSEEEECCGGG--CCH-HHH-----TTCSEEEECCCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCeEEeccccC--hhh-hhh-----cCCCEEEECCcC
Confidence 6999997 9999999999999999 9999999988776654 344333 23332 222 222 269999999986
Q ss_pred H--------HHHHHHHHHhccC-CceEEEEccC
Q 025257 151 V--------SVMRAALECCHKG-WGTSVIVGVA 174 (255)
Q Consensus 151 ~--------~~~~~~~~~l~~~-~G~~v~~g~~ 174 (255)
. .....+++.++.. .++++.++..
T Consensus 72 ~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~ 104 (221)
T 3ew7_A 72 SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA 104 (221)
T ss_dssp STTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred CccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 3 2245666666653 2688888654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00025 Score=55.61 Aligned_cols=104 Identities=16% Similarity=0.258 Sum_probs=68.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcEE---eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~~--~ 139 (255)
+|+.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.|.... .|-.+ +++..+.+.+... |
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK-KKDVEEFVRRTFETYS 83 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 5789999997 8999999999999999 999999998876655 34554322 23333 1223222222221 3
Q ss_pred CccEEEecCCcH--H------------------------HHHHHHHHhc-cCCceEEEEccCC
Q 025257 140 GVDYSFECIGNV--S------------------------VMRAALECCH-KGWGTSVIVGVAA 175 (255)
Q Consensus 140 ~~d~v~d~~g~~--~------------------------~~~~~~~~l~-~~~G~~v~~g~~~ 175 (255)
+.|+++++.|.. . ..+..++.|. .++|++|.+++..
T Consensus 84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~ 146 (254)
T 4fn4_A 84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIA 146 (254)
T ss_dssp CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechh
Confidence 799999988731 0 2345555543 3348999997654
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00016 Score=56.96 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=53.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhcCCcEE-eCCCCCCchHHHHHHhhc--CCCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF-DRAKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~-~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~--~~~~d~v 144 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++. +.+++.++..+ .|-.+ +..+.+.+.+.. .+++|++
T Consensus 26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~l 103 (260)
T 3gem_A 26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSC-ETGIMAFIDLLKTQTSSLRAV 103 (260)
T ss_dssp -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTS-HHHHHHHHHHHHHHCSCCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCC-HHHHHHHHHHHHHhcCCCCEE
Confidence 4578999997 9999999999999999 999999987663 34455565433 34333 122322232221 1379999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+++.|.
T Consensus 104 v~nAg~ 109 (260)
T 3gem_A 104 VHNASE 109 (260)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999883
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=9.1e-05 Score=60.07 Aligned_cols=103 Identities=14% Similarity=0.216 Sum_probs=71.2
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCcEEeCCCCCCchHHHHHHhhc
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
+.....++++++||..|+|. |..+..+++..|+ +|++++.+++..+.+++. |...-+.... .++ .+..
T Consensus 82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~----~~~~ 153 (318)
T 2fk8_A 82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL--QGW----EDFA 153 (318)
T ss_dssp HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE--SCG----GGCC
T ss_pred HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE--CCh----HHCC
Confidence 45667788999999999976 8888889988898 999999999988887543 3211011000 111 1111
Q ss_pred CCCccEEEec-----CCc---HHHHHHHHHHhccCCceEEEEccC
Q 025257 138 DGGVDYSFEC-----IGN---VSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 138 ~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+.||+|+.. .+. ...++.+.+.|+++ |+++.....
T Consensus 154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 196 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSSV 196 (318)
T ss_dssp -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEEE
T ss_pred -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC-cEEEEEEec
Confidence 479999865 332 33478888999997 998876543
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00037 Score=55.50 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=65.0
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+|||+|+ |.+|..+++.+... |. +|+++++++++.+.+...+...+ .|..+ . +.+.+... ++|+||.+.+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~d--~---~~l~~~~~-~~d~vi~~a~ 74 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYFN--Q---ESMVEAFK-GMDTVVFIPS 74 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTTC--H---HHHHHHTT-TCSEEEECCC
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCCC--H---HHHHHHHh-CCCEEEEeCC
Confidence 5899998 99999999888887 88 99999999887665555555433 34433 2 23333332 6999999988
Q ss_pred cH-------HHHHHHHHHhccCC-ceEEEEccCC
Q 025257 150 NV-------SVMRAALECCHKGW-GTSVIVGVAA 175 (255)
Q Consensus 150 ~~-------~~~~~~~~~l~~~~-G~~v~~g~~~ 175 (255)
.. .....+++.++..+ ++++.++...
T Consensus 75 ~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~ 108 (289)
T 3e48_A 75 IIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA 108 (289)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred CCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence 52 12345566665531 4788887754
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00023 Score=56.92 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=54.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcE---EeCCCCCCchHHHHHHhhcCCCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE---FVNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~---vi~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +++... ..|-.+ ...+.+.+.+. +++|++
T Consensus 15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~--~~iD~l 90 (291)
T 3rd5_A 15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQD-LSSVRRFADGV--SGADVL 90 (291)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTTC-HHHHHHHHHTC--CCEEEE
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCCC-HHHHHHHHHhc--CCCCEE
Confidence 5689999997 9999999999999999 9999999988877664 444321 123333 12233333333 479999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+++.|.
T Consensus 91 v~nAg~ 96 (291)
T 3rd5_A 91 INNAGI 96 (291)
T ss_dssp EECCCC
T ss_pred EECCcC
Confidence 999883
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00033 Score=55.05 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc-----C--CcEE-eCCCCCCchHHHHHHhhcCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF-----G--VTEF-VNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~-----g--~~~v-i~~~~~~~~~~~~i~~~~~~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++ + +..+ .|-.+ ++.+.+.+.+....
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 83 (260)
T 2z1n_A 6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE-PGDIDRLFEKARDL 83 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC-HHHHHHHHHHHHHh
Confidence 4678999997 9999999999999999 9999999887665542 22 2 2212 24333 12333333333322
Q ss_pred -CccEEEecCC
Q 025257 140 -GVDYSFECIG 149 (255)
Q Consensus 140 -~~d~v~d~~g 149 (255)
++|+++++.|
T Consensus 84 ~gid~lv~~Ag 94 (260)
T 2z1n_A 84 GGADILVYSTG 94 (260)
T ss_dssp TCCSEEEECCC
T ss_pred cCCCEEEECCC
Confidence 4999999988
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00083 Score=51.23 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=63.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHH-HcCCCeEEEEcCCcc-hHHHHHhcC--CcEE-eCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 72 SIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDPK-KFDRAKNFG--VTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~-~~g~~~v~~~~~~~~-~~~~~~~~g--~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
++|||+|+ |.+|...++.+. ..|+ +|++++++++ +.+.+...+ +..+ .|..+ .+ .+.+... ++|+++
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d--~~---~~~~~~~-~~d~vv 78 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSFQN--PG---XLEQAVT-NAEVVF 78 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCTTC--HH---HHHHHHT-TCSEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCCCC--HH---HHHHHHc-CCCEEE
Confidence 46999997 999999998887 8999 9999999987 666553222 2222 23332 22 2333222 689999
Q ss_pred ecCCcHH-HHHHHHHHhccC-CceEEEEccCC
Q 025257 146 ECIGNVS-VMRAALECCHKG-WGTSVIVGVAA 175 (255)
Q Consensus 146 d~~g~~~-~~~~~~~~l~~~-~G~~v~~g~~~ 175 (255)
++.|... ....+++.++.. .++++.++...
T Consensus 79 ~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~ 110 (221)
T 3r6d_A 79 VGAMESGSDMASIVKALSRXNIRRVIGVSMAG 110 (221)
T ss_dssp ESCCCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EcCCCCChhHHHHHHHHHhcCCCeEEEEeece
Confidence 9998632 134555555432 25888887653
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00051 Score=54.98 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=64.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHH----HhcCCcEE---eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++ .+.+ ++.|.... .|-.+ +..+.+.+.+...
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD-EQHCKDIVQETVRQL 123 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 5789999997 9999999999999999 99999987653 2222 33443321 24333 1222222322211
Q ss_pred CCccEEEecCCcH-----------H---------------HHHHHHHHhccCCceEEEEccC
Q 025257 139 GGVDYSFECIGNV-----------S---------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 139 ~~~d~v~d~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+.+|+++++.|.. . ..+.+++.++.+ |+++.++..
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~iv~isS~ 184 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQG-DVIINTASI 184 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTT-CEEEEECCT
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CEEEEEech
Confidence 3799999987631 0 133444556665 899988764
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0003 Score=53.05 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=71.0
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~~ 135 (255)
+.....++++++||..|+|. |..+..+++.....+|++++.+++..+.+++ .|.+. ++... ..+.+..
T Consensus 32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~~~~~ 105 (204)
T 3e05_A 32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAF-----APEGLDD 105 (204)
T ss_dssp HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECC-----TTTTCTT
T ss_pred HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCC-----hhhhhhc
Confidence 45667889999999999985 8888888888633399999999988888754 34321 22111 1011111
Q ss_pred hcCCCccEEEecCC---cHHHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDGGVDYSFECIG---NVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.+|+|+.... ....++.+.+.|+++ |+++....
T Consensus 106 --~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 143 (204)
T 3e05_A 106 --LPDPDRVFIGGSGGMLEEIIDAVDRRLKSE-GVIVLNAV 143 (204)
T ss_dssp --SCCCSEEEESCCTTCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred --CCCCCEEEECCCCcCHHHHHHHHHHhcCCC-eEEEEEec
Confidence 126999997654 244578899999997 99988744
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00014 Score=57.44 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=52.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE-EeCCCCCCchHHHHHHhhcC--CCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTD--GGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~i~~~~~--~~~d~v~ 145 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+....... ..|-.+ ...+.+.+.+... +++|+++
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~lv 92 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNTLCAQVDVTD-KYTFDTAITRAEKIYGPADAIV 92 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTEEEEECCTTC-HHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCceEEEecCCC-HHHHHHHHHHHHHHCCCCCEEE
Confidence 4678999997 9999999999999999 9999999877655443222221 224333 1223332332221 3799999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 93 nnAg~ 97 (266)
T 3p19_A 93 NNAGM 97 (266)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99884
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00039 Score=54.72 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=53.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcC--CcEE-eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFG--VTEF-VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g--~~~v-i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++. ...+ .|-.+ +..+.+.+.+... +++|
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~~~g~iD 88 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTK-RASVDAAMQKAIDALGGFD 88 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTC-HHHHHHHHHHHHHHHTCCC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4689999997 9999999999999999 9999999887766553 332 2222 34333 1223322332211 3699
Q ss_pred EEEecCC
Q 025257 143 YSFECIG 149 (255)
Q Consensus 143 ~v~d~~g 149 (255)
+++++.|
T Consensus 89 ~lv~~Ag 95 (263)
T 3ak4_A 89 LLCANAG 95 (263)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999987
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00036 Score=55.46 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=53.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc--E-EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT--E-FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~--~-vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+.. . ..|-.+ ++.+.+.+.+... +
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~g 108 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ-PDQVRGMLDQMTGELG 108 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999999999999 9999999888766552 23322 1 124333 1223333332221 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 109 ~iD~lvnnAg~ 119 (276)
T 3r1i_A 109 GIDIAVCNAGI 119 (276)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998884
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00036 Score=54.53 Aligned_cols=79 Identities=16% Similarity=0.274 Sum_probs=52.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----c--C---CcEE-eCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----F--G---VTEF-VNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~--g---~~~v-i~~~~~~~~~~~~i~~~~~ 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+ . + +..+ .|-.+ .+...+.+.+...
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD-CTKADTEIKDIHQ 83 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC-HHHHHHHHHHHHH
Confidence 4678999997 9999999999999999 99999999887665532 1 2 1111 24333 1223322332221
Q ss_pred --CCccEEEecCCc
Q 025257 139 --GGVDYSFECIGN 150 (255)
Q Consensus 139 --~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 84 ~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 84 KYGAVDILVNAAAM 97 (250)
T ss_dssp HHCCEEEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 379999999884
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00026 Score=55.90 Aligned_cols=79 Identities=28% Similarity=0.303 Sum_probs=54.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEE---eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF---VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v---i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++.... .|-.+ +..+.+.+.+... +++|
T Consensus 26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 103 (266)
T 3grp_A 26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSD-RKSIKQLAEVAEREMEGID 103 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS-HHHHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCC-HHHHHHHHHHHHHHcCCCC
Confidence 5689999997 9999999999999999 999999988876665 44554322 23333 1222222222211 3799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 104 ~lvnnAg~ 111 (266)
T 3grp_A 104 ILVNNAGI 111 (266)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999884
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00081 Score=53.21 Aligned_cols=102 Identities=22% Similarity=0.339 Sum_probs=64.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHH----HhcCCcEE---eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++. ++.+.+ ++.|.... .|-.+ ++.+.+.+.+...
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD-AEAIEQAIRETVEAL 107 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 5689999997 8999999999999999 999886543 443333 33453321 23333 1223333332221
Q ss_pred CCccEEEecCCcH----------H---------------HHHHHHHHhccCCceEEEEccC
Q 025257 139 GGVDYSFECIGNV----------S---------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 139 ~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++|+++++.|.. . ..+...+.++.+ |+++.++..
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS~ 167 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGSN 167 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCG
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeCh
Confidence 3799999998741 0 134455566675 999998763
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00041 Score=54.24 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=53.0
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c------CCcE-EeCC--CCCCchHHHHHHhhc
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F------GVTE-FVNP--KDHDKPIQQVLVDLT 137 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~------g~~~-vi~~--~~~~~~~~~~i~~~~ 137 (255)
-.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+ + .+.. ..|- .+ +....+.+.+..
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~ 87 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCT-SENCQQLAQRIA 87 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCC-HHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCC-HHHHHHHHHHHH
Confidence 35789999997 8999999999999999 99999999877665422 1 1222 2333 22 122222222221
Q ss_pred --CCCccEEEecCCc
Q 025257 138 --DGGVDYSFECIGN 150 (255)
Q Consensus 138 --~~~~d~v~d~~g~ 150 (255)
.+++|+++++.|.
T Consensus 88 ~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHCSCCSEEEECCCC
T ss_pred HhCCCCCEEEECCcc
Confidence 1379999998884
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00031 Score=54.92 Aligned_cols=104 Identities=16% Similarity=0.078 Sum_probs=72.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhc-----CCcEEeCCCCCCchHHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNF-----GVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~~-----g~~~vi~~~~~~~~~~~~i~ 134 (255)
+.....++++++||..|+|. |..+..+++.. +. +|++++.+++..+.+++. |.+.+- ... .+..+.
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~g~~~v~-~~~--~d~~~~-- 160 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKG-LVESYEARPHHLAQAERNVRAFWQVENVR-FHL--GKLEEA-- 160 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHCCCCCEE-EEE--SCGGGC--
T ss_pred HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhcCCCCEE-EEE--Cchhhc--
Confidence 45667889999999999985 88888999886 45 999999999888887553 532221 000 111110
Q ss_pred hhcCCCccEEEecCCcH-HHHHHHHHHhccCCceEEEEcc
Q 025257 135 DLTDGGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+..+.+|+|+.....+ ..++.+.+.|+++ |+++.+..
T Consensus 161 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 199 (258)
T 2pwy_A 161 ELEEAAYDGVALDLMEPWKVLEKAALALKPD-RFLVAYLP 199 (258)
T ss_dssp CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred CCCCCCcCEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence 11123799999655544 5588999999997 99888754
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0008 Score=53.01 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc-----CC--cEE-eCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF-----GV--TEF-VNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~-----g~--~~v-i~~~~~~~~~~~~i~~~~~- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ +++ +. ..+ .|-.+ ++.+.+.+.+...
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDH 83 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC-HHHHHHHHHHHHHH
Confidence 4678999997 9999999999999999 999999987765543 222 11 111 24333 1223333332211
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 84 ~g~id~lv~~Ag~ 96 (267)
T 2gdz_A 84 FGRLDILVNNAGV 96 (267)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 369999999884
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0012 Score=50.67 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=69.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCc--EEeCCCCCCchHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVT--EFVNPKDHDKPIQQVL 133 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~i 133 (255)
+....+.+++.+||-.|+|. |..+..+++.. +. +|++++.+++..+.+++ .|.. .+ .... .+..+.+
T Consensus 48 l~~~~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i-~~~~--gda~~~l 122 (221)
T 3dr5_A 48 LAATTNGNGSTGAIAITPAA-GLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRV-RFLL--SRPLDVM 122 (221)
T ss_dssp HHHHSCCTTCCEEEEESTTH-HHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGE-EEEC--SCHHHHG
T ss_pred HHHhhCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcE-EEEE--cCHHHHH
Confidence 33445555667999999875 88888999986 56 99999999988777743 4533 22 1111 3344434
Q ss_pred HhhcCCCccEEEecCCc---HHHHHHHHHHhccCCceEEEE
Q 025257 134 VDLTDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 134 ~~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.....+.||+||-.... ...++.+.+.|+++ |.++.-
T Consensus 123 ~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d 162 (221)
T 3dr5_A 123 SRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRG-GALVLA 162 (221)
T ss_dssp GGSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEE-EEEEET
T ss_pred HHhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCC-cEEEEe
Confidence 33323489999843332 23478889999996 888764
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0019 Score=51.50 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=63.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
.+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|.... .++.+.+. ..|+|+.|+..+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDvvi~~vp~~ 68 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAERA-------ATPCEVVE-----SCPVTFAMLADP 68 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC-------SSHHHHHH-----HCSEEEECCSSH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec-------CCHHHHHh-----cCCEEEEEcCCH
Confidence 478999999999999999999998 99999999999999888776421 33434443 378899888865
Q ss_pred HHHHHHH-------HHhccCCceEEEEc
Q 025257 152 SVMRAAL-------ECCHKGWGTSVIVG 172 (255)
Q Consensus 152 ~~~~~~~-------~~l~~~~G~~v~~g 172 (255)
..++..+ ..++++ ..++..+
T Consensus 69 ~~~~~v~~~~~~l~~~l~~~-~~vi~~s 95 (287)
T 3pef_A 69 AAAEEVCFGKHGVLEGIGEG-RGYVDMS 95 (287)
T ss_dssp HHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred HHHHHHHcCcchHhhcCCCC-CEEEeCC
Confidence 4355544 455664 5555553
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=9.1e-05 Score=57.35 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=70.3
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhc
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
+.+...++++++||..|+| .|..+..+++..+. +|++++.+++..+.+++ .|...+ .... .+. ...+.
T Consensus 83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~--~d~---~~~~~ 154 (235)
T 1jg1_A 83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNV-HVIL--GDG---SKGFP 154 (235)
T ss_dssp HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSE-EEEE--SCG---GGCCG
T ss_pred HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEE--CCc---ccCCC
Confidence 4455678999999999998 58888999998875 99999999988777754 443222 1111 111 11122
Q ss_pred CC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEc
Q 025257 138 DG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 138 ~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.+ +||+|+.+..-....+.+.+.|+++ |+++..-
T Consensus 155 ~~~~fD~Ii~~~~~~~~~~~~~~~L~pg-G~lvi~~ 189 (235)
T 1jg1_A 155 PKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIPV 189 (235)
T ss_dssp GGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred CCCCccEEEECCcHHHHHHHHHHhcCCC-cEEEEEE
Confidence 23 5999997766555456888999997 9876653
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00058 Score=53.98 Aligned_cols=103 Identities=23% Similarity=0.312 Sum_probs=65.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-cchHHHH----HhcCCcEE---eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~-~~~~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ +++|.+.++.+...|+ +|++++++ +++.+.+ ++.|.... .|-.+ ++.+.+.+.+...
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ-VPEIVKLFDQAVAHF 94 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5689999997 8999999999999999 99987654 3333332 33453321 23333 1223333332221
Q ss_pred CCccEEEecCCcH----------H---------------HHHHHHHHhccCCceEEEEccCC
Q 025257 139 GGVDYSFECIGNV----------S---------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 139 ~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+.+|+++++.|.. . ..+.+++.+..+ |+++.++...
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~ 155 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG-GRIVLTSSNT 155 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCTT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CeEEEEeCch
Confidence 2699999988841 1 134556667776 9999998754
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=58.53 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=72.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-E--EeCCCCCCchHHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-E--FVNPKDHDKPIQQVLV 134 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~--vi~~~~~~~~~~~~i~ 134 (255)
+.....++++++||-.|+|. |..+..+++..|+ +|++++.+++..+.+++ .|.. . ++. .++ .
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-----~d~----~ 132 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI-----QGW----E 132 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEE-----CCG----G
T ss_pred HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-----CCH----H
Confidence 55667889999999999985 8888999998897 99999999988877754 3432 1 221 111 1
Q ss_pred hhcCCCccEEEecCCc---------------HHHHHHHHHHhccCCceEEEEccC
Q 025257 135 DLTDGGVDYSFECIGN---------------VSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+. .+.||+|+....- ...++.+.+.|+++ |+++.....
T Consensus 133 ~~-~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~ 185 (302)
T 3hem_A 133 EF-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT 185 (302)
T ss_dssp GC-CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEEE
T ss_pred Hc-CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEEe
Confidence 22 3489999853221 24478888999997 999887654
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00052 Score=53.16 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=51.0
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEEEe
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYSFE 146 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v~d 146 (255)
++++||+|+ |++|.+.++.+...|+ +|+++++++++ ..++++...+ .|-.+ .+..+.+.+... +++|++++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~g~id~lv~ 76 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAVPLPTDLEK--DDPKGLVKRALEALGGLHVLVH 76 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCEEEECCTTT--SCHHHHHHHHHHHHTSCCEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcEEEecCCch--HHHHHHHHHHHHHcCCCCEEEE
Confidence 468999997 9999999999999999 99999998766 3344454322 23332 333333322211 36999999
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
+.|.
T Consensus 77 ~Ag~ 80 (239)
T 2ekp_A 77 AAAV 80 (239)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8873
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00041 Score=54.27 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=53.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE---EeCCCCCCchH---HHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPI---QQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~---~~~i~~~~~ 138 (255)
+++++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. +.|... ..|-.+ ++.+ .+.+.+.
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~-- 81 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN-EDEVTAFLNAADAH-- 81 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHH--
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC-HHHHHHHHHHHHhh--
Confidence 4689999997 8999999999999999 9999999988766552 234321 124333 1222 2333333
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 82 g~id~lv~nAg~ 93 (252)
T 3h7a_A 82 APLEVTIFNVGA 93 (252)
T ss_dssp SCEEEEEECCCC
T ss_pred CCceEEEECCCc
Confidence 479999999883
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00042 Score=55.09 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=54.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ .+++... ..|-.+ ++...+.+.+... +++|
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 103 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSS-AKDAESMVEKTTAKWGRVD 103 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4689999997 9999999999999999 999999998876665 3445322 134333 1223222332221 3699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 104 ~lv~nAg~ 111 (277)
T 4dqx_A 104 VLVNNAGF 111 (277)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999883
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00036 Score=51.17 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=70.8
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh----cCCc-EEeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~i~~ 135 (255)
+.....++++++||..|+|. |..+..+++.. +. +|++++.+++..+.+++ .|.+ .++-..+ ..+.+..
T Consensus 17 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d----~~~~~~~ 90 (178)
T 3hm2_A 17 AISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQT-TAVCFEISEERRERILSNAINLGVSDRIAVQQG----APRAFDD 90 (178)
T ss_dssp HHHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSE-EEEEECSCHHHHHHHHHHHHTTTCTTSEEEECC----TTGGGGG
T ss_pred HHHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCC-eEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecc----hHhhhhc
Confidence 34556788999999999986 88888888887 45 99999999988887753 4543 2211111 1111221
Q ss_pred hcCCCccEEEecCCc--HHHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDGGVDYSFECIGN--VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
. .+.||+|+..... ...++.+.+.|+++ |+++....
T Consensus 91 ~-~~~~D~i~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 128 (178)
T 3hm2_A 91 V-PDNPDVIFIGGGLTAPGVFAAAWKRLPVG-GRLVANAV 128 (178)
T ss_dssp C-CSCCSEEEECC-TTCTTHHHHHHHTCCTT-CEEEEEEC
T ss_pred c-CCCCCEEEECCcccHHHHHHHHHHhcCCC-CEEEEEee
Confidence 1 1379999965433 23589999999997 99987654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00023 Score=56.49 Aligned_cols=104 Identities=19% Similarity=0.243 Sum_probs=71.9
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCC-cEEeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGV-TEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~i~~ 135 (255)
+.....+.++++||..|+|. |..+..+++..| ..+|++++.+++..+.+++ .|. +.+--.. .++.+.
T Consensus 104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~--- 176 (277)
T 1o54_A 104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV---RDISEG--- 176 (277)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC---CCGGGC---
T ss_pred HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE---CCHHHc---
Confidence 45667889999999999987 888889998864 2399999999988887754 343 2211111 111111
Q ss_pred hcCCCccEEEecCCcH-HHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDGGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
...+.||+|+.....+ ..++.+.+.|+++ |+++....
T Consensus 177 ~~~~~~D~V~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 214 (277)
T 1o54_A 177 FDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP 214 (277)
T ss_dssp CSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred ccCCccCEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 1123799999665544 4588999999997 99888754
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0011 Score=51.35 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc-CCcEE-eCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF-GVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~-g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++ +...+ .|-.+ .+-.+.+.+. -+++|+++
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~-~~~id~vi 81 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD--WEATERALGS-VGPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHTT-CCCCCEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCCC--HHHHHHHHHH-cCCCCEEE
Confidence 4689999998 9999999999999999 9999999887766553 33 33322 23333 3222222221 13699999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 82 ~~Ag~ 86 (244)
T 3d3w_A 82 NNAAV 86 (244)
T ss_dssp ECCCC
T ss_pred ECCcc
Confidence 99873
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00038 Score=54.68 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=54.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhc--CCCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLT--DGGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~--~~~~d 142 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ .+++... ..|-.+ ++.+.+.+.+.. -+++|
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id 84 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTR-QDSIDAAIAATVEHAGGLD 84 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHSSSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4689999997 9999999999999999 999999988776665 4444321 124333 122332233221 13799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 85 ~lv~~Ag~ 92 (259)
T 4e6p_A 85 ILVNNAAL 92 (259)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999884
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00095 Score=53.10 Aligned_cols=102 Identities=23% Similarity=0.293 Sum_probs=63.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------cchHHHH----HhcCCcE---EeCCCCCCchH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID------------PKKFDRA----KNFGVTE---FVNPKDHDKPI 129 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~------------~~~~~~~----~~~g~~~---vi~~~~~~~~~ 129 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++ .++.+.+ ++.+... ..|-.+ +...
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD-RAAV 86 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC-HHHH
Confidence 4689999997 8999999999999999 99999876 3333332 2334322 124333 1223
Q ss_pred HHHHHhhcC--CCccEEEecCCcH--------H---------------HHHHHHHHhccCCceEEEEccC
Q 025257 130 QQVLVDLTD--GGVDYSFECIGNV--------S---------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 130 ~~~i~~~~~--~~~d~v~d~~g~~--------~---------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.+.+.+... +++|+++++.|.. . ..+.++..+..+ |+++.++..
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~ 155 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSG-ASIITTGSV 155 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCH
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcC-cEEEEeccc
Confidence 222332221 3799999988841 1 123344455565 899988763
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00014 Score=56.85 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=68.9
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhcCC-
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTDG- 139 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~~~- 139 (255)
....++.+||-.|+|. |..+..+++..+ ..+|++++.+++..+.+++ .|...-+.... .+..+.+....+.
T Consensus 59 ~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~--~d~~~~l~~~~~~~ 135 (248)
T 3tfw_A 59 VRLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE--GPALQSLESLGECP 135 (248)
T ss_dssp HHHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE--SCHHHHHHTCCSCC
T ss_pred HhhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHhcCCCC
Confidence 3456789999999875 888888888763 2399999999988877754 35431111111 3444445444333
Q ss_pred CccEEEecCCc---HHHHHHHHHHhccCCceEEEEcc
Q 025257 140 GVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 140 ~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.||+|+-.... +..++.+.+.|+++ |.++.-..
T Consensus 136 ~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~~~~ 171 (248)
T 3tfw_A 136 AFDLIFIDADKPNNPHYLRWALRYSRPG-TLIIGDNV 171 (248)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEECC
T ss_pred CeEEEEECCchHHHHHHHHHHHHhcCCC-eEEEEeCC
Confidence 79999932222 33478889999997 98876544
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0019 Score=45.13 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=54.1
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+|+|.|+|.+|...++.+...|. +|+++++++++.+.+++ .+...+. +..+ .+ .+.+..-.++|+|+.+++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~--~~---~l~~~~~~~~d~vi~~~~ 78 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCTK--IK---TLEDAGIEDADMYIAVTG 78 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTTS--HH---HHHHTTTTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEEEEcCCCC--HH---HHHHcCcccCCEEEEeeC
Confidence 579999999999999999999998 99999999888877754 5654332 2222 22 222221126999999998
Q ss_pred cHH
Q 025257 150 NVS 152 (255)
Q Consensus 150 ~~~ 152 (255)
...
T Consensus 79 ~~~ 81 (140)
T 1lss_A 79 KEE 81 (140)
T ss_dssp CHH
T ss_pred Cch
Confidence 765
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0015 Score=52.30 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=64.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHH----HhcCCcEEe---CCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRA----KNFGVTEFV---NPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~--~~~~~----~~~g~~~vi---~~~~~~~~~~~~i~~~~~- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|++++++.+ +.+.+ ++.|....+ |-.+ +....+.+.+...
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSD-ESFARSLVHKAREA 125 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHHHH
Confidence 5789999997 9999999999999999 9999987633 23222 334543222 3222 1222222222211
Q ss_pred -CCccEEEecCCcHH--------------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 139 -GGVDYSFECIGNVS--------------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 139 -~~~d~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+++|+++++.|... ..+..+..+..+ |+++.++...
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~Iv~isS~~ 188 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG-ASIITTSSIQ 188 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCGG
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC-CEEEEECChh
Confidence 37999999887310 133444556675 8999997643
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00041 Score=55.83 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=54.3
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
-.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+... ..|-.+ .+.+.+.+.+...
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH-LDEMVRLADEAFRLL 106 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhC
Confidence 35789999997 9999999999999999 9999999988766552 234321 234333 1223322332211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|++++++|.
T Consensus 107 g~id~lvnnAg~ 118 (301)
T 3tjr_A 107 GGVDVVFSNAGI 118 (301)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999883
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00044 Score=54.14 Aligned_cols=79 Identities=25% Similarity=0.291 Sum_probs=53.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++... ..|-.+ ++.+.+.+.+... +++|
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~iD 81 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGSVD 81 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4678999997 9999999999999999 999999988776655 3444321 124333 1233333332221 2699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 82 ~lv~nAg~ 89 (254)
T 1hdc_A 82 GLVNNAGI 89 (254)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998873
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00057 Score=53.55 Aligned_cols=78 Identities=26% Similarity=0.295 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE--eCCCCCCchHHHHHHhhcC--CCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF--VNPKDHDKPIQQVLVDLTD--GGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v--i~~~~~~~~~~~~i~~~~~--~~~d~v 144 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+..++++. .. .|-.+ ++.+.+.+.+... +++|++
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~-~~~~~~~~~~~~~~~g~iD~l 81 (256)
T 2d1y_A 5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLED-ERERVRFVEEAAYALGRVDVL 81 (256)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 4678999997 9999999999999999 99999998877333344432 22 23333 1223333332211 379999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+++.|.
T Consensus 82 v~~Ag~ 87 (256)
T 2d1y_A 82 VNNAAI 87 (256)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998873
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0007 Score=52.20 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=51.8
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-----hcCCcEE---eCCCCCCchHHHHHHhhcC--C
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-----NFGVTEF---VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-----~~g~~~v---i~~~~~~~~~~~~i~~~~~--~ 139 (255)
++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+. +.+.... .|-.+ +..+.+.+.+... +
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK-AESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHCC-HHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC-HHHHHHHHHHHHHhcC
Confidence 578999997 9999999999999999 9999999987766542 2343221 24333 1222222222211 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 80 ~id~li~~Ag~ 90 (235)
T 3l77_A 80 DVDVVVANAGL 90 (235)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 79999999884
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00052 Score=54.28 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=54.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc--E-EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVT--E-FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~--~-vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++.. . ..|-.+ +..+.+.+.+... +++|
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 87 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTN-EVSVRALIDFTIDTFGRLD 87 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4689999997 9999999999999999 999999998876665 445532 1 234333 1223222322211 3799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 88 ~lv~nAg~ 95 (271)
T 3tzq_B 88 IVDNNAAH 95 (271)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998874
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00041 Score=54.44 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=54.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++++... ..|-.+ ++.+.+.+.+... +++|
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id 85 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISK-EADVDAAVEAALSKFGKVD 85 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHhcCCCC
Confidence 4679999997 8999999999999999 999999998887766 3454321 123333 1223333332221 2699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 86 ~li~~Ag~ 93 (261)
T 3n74_A 86 ILVNNAGI 93 (261)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99998873
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.44 E-value=9.3e-05 Score=57.17 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=68.0
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHHh
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~~ 135 (255)
......++++||..|+| .|..+..+++.. +. +|++++.+++..+.+++ .|.. .++.. +..+.+..
T Consensus 48 ~~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~ 120 (233)
T 2gpy_A 48 HLLKMAAPARILEIGTA-IGYSAIRMAQALPEA-TIVSIERDERRYEEAHKHVKALGLESRIELLFG-----DALQLGEK 120 (233)
T ss_dssp HHHHHHCCSEEEEECCT-TSHHHHHHHHHCTTC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-----CGGGSHHH
T ss_pred HHHhccCCCEEEEecCC-CcHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----CHHHHHHh
Confidence 33445678899999988 588888999887 55 99999999988887754 3532 12221 11111222
Q ss_pred hc-CCCccEEEecCCc---HHHHHHHHHHhccCCceEEEEc
Q 025257 136 LT-DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 136 ~~-~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.. .+.||+|+..... ...++.+.+.|+++ |+++...
T Consensus 121 ~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~ 160 (233)
T 2gpy_A 121 LELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPG-GLILSDN 160 (233)
T ss_dssp HTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEE-EEEEEET
T ss_pred cccCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence 21 2379999865543 34478888999997 9988763
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00051 Score=54.19 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc-----CCcE--E-eCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF-----GVTE--F-VNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~-----g~~~--v-i~~~~~~~~~~~~i~~~~~- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++ +... + .|-.+ ++.+.+.+.+...
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATTER 89 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 4689999997 9999999999999999 9999999887665542 21 3321 1 24333 1223333332211
Q ss_pred -CCccEEEecCC
Q 025257 139 -GGVDYSFECIG 149 (255)
Q Consensus 139 -~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 90 ~g~id~lv~nAg 101 (267)
T 1iy8_A 90 FGRIDGFFNNAG 101 (267)
T ss_dssp HSCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 36999999887
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00031 Score=55.12 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---cCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N---FGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~---~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. + .+... ..|-.+ ++.+.+.+.+... +
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 82 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN-TDDIQKMIEQIDEKFG 82 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999999999999 9999999988776653 2 23221 124333 1223222332221 3
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|+++++.|
T Consensus 83 ~id~lv~nAg 92 (257)
T 3imf_A 83 RIDILINNAA 92 (257)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999988
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0009 Score=53.61 Aligned_cols=104 Identities=21% Similarity=0.268 Sum_probs=65.8
Q ss_pred CCCCEEEEEcC-Ch--HHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcEE--eCCCCCCchHHHHHHhhc--
Q 025257 69 EPGSIVAVFGL-GT--VGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF--VNPKDHDKPIQQVLVDLT-- 137 (255)
Q Consensus 69 ~~~~~vlI~G~-g~--vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v--i~~~~~~~~~~~~i~~~~-- 137 (255)
-+++++||+|+ |. +|.+.++.+...|+ +|++++++++..+.++ +.+.-.. .|-.+ ++.+.+.+.+..
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVAD-AASIDAVFETLEKK 106 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCC-HHHHHHHHHHHHHh
Confidence 45789999987 55 99999999999999 9999998865444432 2332222 24333 122222222221
Q ss_pred CCCccEEEecCCcHH-----------------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 138 DGGVDYSFECIGNVS-----------------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
-+++|+++++.|... ..+.++..++.+ |+++.++...
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~isS~~ 172 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG-GSILTLTYYG 172 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-EEEEEEECGG
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CEEEEEeehh
Confidence 137999999988420 134455566675 9999987643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00019 Score=55.63 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=69.0
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhc
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
......++++||..|+|. |..+..+++.. +. +|++++.+++..+.+++ .|...-+.... .+..+.+.+..
T Consensus 54 ~l~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~--~d~~~~~~~~~ 129 (239)
T 2hnk_A 54 ILTKISGAKRIIEIGTFT-GYSSLCFASALPEDG-KILCCDVSEEWTNVARKYWKENGLENKIFLKL--GSALETLQVLI 129 (239)
T ss_dssp HHHHHHTCSEEEEECCTT-CHHHHHHHHHSCTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHH
T ss_pred HHHHhhCcCEEEEEeCCC-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE--CCHHHHHHHHH
Confidence 334456788999999884 88888999987 45 99999999988777754 35422111111 23333232221
Q ss_pred --------------C-CCccEEEecCCcH---HHHHHHHHHhccCCceEEEEc
Q 025257 138 --------------D-GGVDYSFECIGNV---SVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 138 --------------~-~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g 172 (255)
+ +.||+|+.....+ ..++.+.+.|+++ |.++.-.
T Consensus 130 ~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~ 181 (239)
T 2hnk_A 130 DSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG-GLLIADN 181 (239)
T ss_dssp HCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred hhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence 1 4799999765543 3468888999997 9988653
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00034 Score=56.83 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC--cE---EeCCCCCCchHHHHHHhhc--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV--TE---FVNPKDHDKPIQQVLVDLT-- 137 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~--~~---vi~~~~~~~~~~~~i~~~~-- 137 (255)
.+++|||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ..+. .. ..|-.+ +..+.+.+....
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS-REGFKMAADEVEAR 84 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC-HHHHHHHHHHHHHh
Confidence 4679999997 9999999999999999 9999999988766552 2232 11 234333 123333333221
Q ss_pred CCCccEEEecCC
Q 025257 138 DGGVDYSFECIG 149 (255)
Q Consensus 138 ~~~~d~v~d~~g 149 (255)
.+++|+++++.|
T Consensus 85 ~g~id~lv~nAg 96 (319)
T 3ioy_A 85 FGPVSILCNNAG 96 (319)
T ss_dssp TCCEEEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 137999999988
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00053 Score=54.00 Aligned_cols=78 Identities=12% Similarity=0.200 Sum_probs=49.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch---HHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK---FDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~---~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~ 138 (255)
.++++||+|+ +++|.+.++.+...|+ +|++++++... .+.+ ++.|... ..|-.+ ++...+.+.+...
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN-EEEVAKLFDFAEK 87 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHH
Confidence 4689999997 8999999999999999 99998765433 2222 2234322 124333 1222222322211
Q ss_pred --CCccEEEecCC
Q 025257 139 --GGVDYSFECIG 149 (255)
Q Consensus 139 --~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 88 ~~g~iD~lvnnAg 100 (262)
T 3ksu_A 88 EFGKVDIAINTVG 100 (262)
T ss_dssp HHCSEEEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 37999999988
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00058 Score=53.71 Aligned_cols=79 Identities=24% Similarity=0.450 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----CCcE--E-eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----GVTE--F-VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g~~~--v-i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++ +... + .|-.+ ++.+.+.+.+...
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT-PEGVDAVVESVRSSF 83 (263)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4678999997 9999999999999999 9999999887665542 22 4321 1 24333 1223332332211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 84 g~id~lv~~Ag~ 95 (263)
T 3ai3_A 84 GGADILVNNAGT 95 (263)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 369999999873
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00077 Score=52.63 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=63.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcC--CCccEEEe
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD--GGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~--~~~d~v~d 146 (255)
-++++||+|+ |++|.+.++.+...|+ +|+++++++++.+. ....++-.+ .+.+.+.+.+... +.+|++++
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~d~~d-~~~v~~~~~~~~~~~g~iD~li~ 93 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNAD-----HSFTIKDSG-EEEIKSVIEKINSKSIKVDTFVC 93 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSS-----EEEECSCSS-HHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----cceEEEeCC-HHHHHHHHHHHHHHcCCCCEEEE
Confidence 3578999997 9999999999999999 99999988765321 111233222 1333333333322 27999999
Q ss_pred cCCcH-----------H---------------HHHHHHHHhccCCceEEEEccC
Q 025257 147 CIGNV-----------S---------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 147 ~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+.|.. . ..+.+...++.+ |+++.++..
T Consensus 94 ~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~ 146 (251)
T 3orf_A 94 AAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-GLFVLTGAS 146 (251)
T ss_dssp CCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred CCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-CEEEEEech
Confidence 98830 0 133445556675 899999764
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00045 Score=54.14 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=48.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc--EE-eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVT--EF-VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~--~v-i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+++++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++++.. .+ .|-.+ ++...+.+.+... +++|
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 83 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTN-EADATAALAFAKQEFGHVH 83 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4689999997 9999999999999999 999999988776554 344422 11 23333 1223322332211 2799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 84 ~lv~nAg~ 91 (257)
T 3tpc_A 84 GLVNCAGT 91 (257)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998873
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00055 Score=53.74 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE--E-eCCCCCCchHHHH---HHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE--F-VNPKDHDKPIQQV---LVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~--v-i~~~~~~~~~~~~---i~~~~~ 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+... + .|-.+ ++.+.+. +.+..+
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVANHFH 85 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999999999999 999999988766543 2234321 1 24333 1222222 222222
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 86 g~id~lv~~Ag 96 (260)
T 2ae2_A 86 GKLNILVNNAG 96 (260)
T ss_dssp TCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47999999988
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0007 Score=52.80 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHH-HHHhcCCcE---EeCCCCCCchHHHHHHhhcC--CCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFD-RAKNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~~-~~~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++ ++.+ .+++.+... ..|-.+ ++.+.+.+.+... +++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i 83 (249)
T 2ew8_A 6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGRC 83 (249)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHcCCC
Confidence 4678999997 9999999999999999 999999887 5544 344555322 124333 1223322332211 379
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++++.|.
T Consensus 84 d~lv~nAg~ 92 (249)
T 2ew8_A 84 DILVNNAGI 92 (249)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999998873
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0005 Score=54.37 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcC-CcEE-eCCCCCCchHHHHHHhhcC--CCccE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFG-VTEF-VNPKDHDKPIQQVLVDLTD--GGVDY 143 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g-~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~ 143 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++. ...+ .|-.+ ++.+.+.+.+... +++|+
T Consensus 8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~ 85 (270)
T 1yde_A 8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ-EDDVKTLVSETIRRFGRLDC 85 (270)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 4689999997 9999999999999999 9999999887766653 332 2212 23333 1223222322211 36999
Q ss_pred EEecCCc
Q 025257 144 SFECIGN 150 (255)
Q Consensus 144 v~d~~g~ 150 (255)
++++.|.
T Consensus 86 lv~nAg~ 92 (270)
T 1yde_A 86 VVNNAGH 92 (270)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998873
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0006 Score=53.98 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=53.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHH---HHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQ---QVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~---~~i~~~~~ 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+... ..|-.+ ++.+. +.+.+..+
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS-RTERDKLMQTVAHVFD 97 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999999999999 999999988766544 2234321 124333 12222 22333332
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 98 g~id~lv~nAg~ 109 (273)
T 1ae1_A 98 GKLNILVNNAGV 109 (273)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 479999999874
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00078 Score=53.20 Aligned_cols=102 Identities=18% Similarity=0.255 Sum_probs=63.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~-~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ +++|.+.++.+...|+ +|++.+ +++++.+.+ +..+... ..|-.+ ++.+.+.+.+...
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD-PAAVRRLFATAEEAF 103 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5789999997 9999999999888999 888874 444444443 2334322 124333 1223222322221
Q ss_pred CCccEEEecCCcH----------H---------------HHHHHHHHhccCCceEEEEccC
Q 025257 139 GGVDYSFECIGNV----------S---------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 139 ~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++|+++++.|.. . ..+.+++.++.+ |+++.++..
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS~ 163 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-GRIINMSTS 163 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CeEEEEeCh
Confidence 3799999998841 0 134555566775 899998763
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00066 Score=52.59 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c-CCcEE-eCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F-GVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~-g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+ . +...+ .|-.+ .+-.+.+.+. -+++|+++
T Consensus 6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~-~~~id~vi 81 (244)
T 1cyd_A 6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD--WDATEKALGG-IGPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHTT-CCCCSEEE
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCCcEEecCCC--HHHHHHHHHH-cCCCCEEE
Confidence 4679999997 9999999999999999 99999998877665533 2 33322 23333 3222222221 12699999
Q ss_pred ecCC
Q 025257 146 ECIG 149 (255)
Q Consensus 146 d~~g 149 (255)
++.|
T Consensus 82 ~~Ag 85 (244)
T 1cyd_A 82 NNAA 85 (244)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 9988
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0019 Score=51.70 Aligned_cols=86 Identities=16% Similarity=0.242 Sum_probs=63.0
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|... . .++.+.+. .+|+|+.|+..+.
T Consensus 7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~-~------~~~~~~~~-----~~D~vi~~v~~~~ 73 (299)
T 1vpd_A 7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET-A------STAKAIAE-----QCDVIITMLPNSP 73 (299)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-C------SSHHHHHH-----HCSEEEECCSSHH
T ss_pred eEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCee-c------CCHHHHHh-----CCCEEEEECCCHH
Confidence 79999999999999988888898 9999999999888887777532 1 23333333 4899999998655
Q ss_pred HHHHHH-------HHhccCCceEEEEc
Q 025257 153 VMRAAL-------ECCHKGWGTSVIVG 172 (255)
Q Consensus 153 ~~~~~~-------~~l~~~~G~~v~~g 172 (255)
.++..+ ..++++ ..++.++
T Consensus 74 ~~~~~~~~~~~l~~~l~~~-~~vv~~s 99 (299)
T 1vpd_A 74 HVKEVALGENGIIEGAKPG-TVLIDMS 99 (299)
T ss_dssp HHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred HHHHHHhCcchHhhcCCCC-CEEEECC
Confidence 455554 456664 5666554
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.40 E-value=3.4e-05 Score=58.58 Aligned_cols=100 Identities=16% Similarity=0.060 Sum_probs=68.6
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~~ 135 (255)
+.....++++++||..|+|. |..+..+++. +. +|++++.+++..+.+++ .|... ++.. +..+...
T Consensus 69 ~~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~~- 139 (210)
T 3lbf_A 69 MTELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHG-----DGWQGWQ- 139 (210)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CGGGCCG-
T ss_pred HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEEC-----CcccCCc-
Confidence 45667889999999999874 7888888887 77 99999999988877754 34332 2211 1111011
Q ss_pred hcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEc
Q 025257 136 LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
..+.||+|+....-....+...+.|+++ |+++..-
T Consensus 140 -~~~~~D~i~~~~~~~~~~~~~~~~L~pg-G~lv~~~ 174 (210)
T 3lbf_A 140 -ARAPFDAIIVTAAPPEIPTALMTQLDEG-GILVLPV 174 (210)
T ss_dssp -GGCCEEEEEESSBCSSCCTHHHHTEEEE-EEEEEEE
T ss_pred -cCCCccEEEEccchhhhhHHHHHhcccC-cEEEEEE
Confidence 1237999997655544346788999997 9887653
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00053 Score=52.83 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcC-CcEE-eCCCCCCchHHHHHHhhcC--CCccEE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFG-VTEF-VNPKDHDKPIQQVLVDLTD--GGVDYS 144 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g-~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v 144 (255)
++++||+|+ |++|...++.+...|+ +|+++++++++.+.+. +++ ...+ .|-.+ ++.+.+.+.+... +++|++
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~l 82 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVRE-EGDWARAVAAMEEAFGELSAL 82 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 568999997 9999999999999999 9999999887766553 333 2222 24333 1223332332211 369999
Q ss_pred EecCC
Q 025257 145 FECIG 149 (255)
Q Consensus 145 ~d~~g 149 (255)
+++.|
T Consensus 83 i~~Ag 87 (234)
T 2ehd_A 83 VNNAG 87 (234)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99987
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00056 Score=53.90 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=53.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc--E-EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVT--E-FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~--~-vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++.. . ..|-.+ ++.+.+.+.+... +.+|
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~iD 82 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRLH 82 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHHcCCCc
Confidence 4678999997 9999999999999999 999999998876665 344322 1 124333 1223222332211 3699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 83 ~lvnnAg~ 90 (263)
T 2a4k_A 83 GVAHFAGV 90 (263)
T ss_dssp EEEEGGGG
T ss_pred EEEECCCC
Confidence 99998873
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00059 Score=53.20 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.|... ..|-.+ ++.+.+.+.+... +
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g 83 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD-RQGVDAAVASTVEALG 83 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4678999997 9999999999999999 9999999887765542 224321 124333 1223222332211 3
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|+++++.|
T Consensus 84 ~id~lv~nAg 93 (247)
T 2jah_A 84 GLDILVNNAG 93 (247)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999887
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00043 Score=54.99 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc---CCcEE--eCCCCCCchHHHHHHhhc--CCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF---GVTEF--VNPKDHDKPIQQVLVDLT--DGG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~---g~~~v--i~~~~~~~~~~~~i~~~~--~~~ 140 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ +++ +.-.. .|-.+ ++.+.+.+.+.. .++
T Consensus 28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~ 105 (276)
T 2b4q_A 28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSS-EAGARRLAQALGELSAR 105 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTS-HHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCC-HHHHHHHHHHHHHhcCC
Confidence 4678999997 9999999999999999 999999988766544 222 21111 23222 122222222221 137
Q ss_pred ccEEEecCC
Q 025257 141 VDYSFECIG 149 (255)
Q Consensus 141 ~d~v~d~~g 149 (255)
+|+++++.|
T Consensus 106 iD~lvnnAg 114 (276)
T 2b4q_A 106 LDILVNNAG 114 (276)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999999987
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0023 Score=51.93 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=63.8
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+... .++.+.+. ..|+|+.|+..
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-------~~~~e~~~-----~aDvVi~~vp~ 97 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATIH-------EQARAAAR-----DADIVVSMLEN 97 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEEE-------SSHHHHHT-----TCSEEEECCSS
T ss_pred CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEee-------CCHHHHHh-----cCCEEEEECCC
Confidence 3589999999999999999999999 99999999999998887776432 22333332 47888888886
Q ss_pred HHHHHHHH------HHhccCCceEEEEcc
Q 025257 151 VSVMRAAL------ECCHKGWGTSVIVGV 173 (255)
Q Consensus 151 ~~~~~~~~------~~l~~~~G~~v~~g~ 173 (255)
+..++..+ ..+.++ ..++.++.
T Consensus 98 ~~~~~~v~~~~~~~~~l~~~-~~vi~~st 125 (320)
T 4dll_A 98 GAVVQDVLFAQGVAAAMKPG-SLFLDMAS 125 (320)
T ss_dssp HHHHHHHHTTTCHHHHCCTT-CEEEECSC
T ss_pred HHHHHHHHcchhHHhhCCCC-CEEEecCC
Confidence 54355444 245554 55555543
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00027 Score=55.00 Aligned_cols=75 Identities=27% Similarity=0.253 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhcCCcEE---eCCCCCCchHHHHHHhhc-CCCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVTEF---VNPKDHDKPIQQVLVDLT-DGGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~--~~~~~~~~g~~~v---i~~~~~~~~~~~~i~~~~-~~~~d 142 (255)
+|+++||+|+ +++|.+.++.+...|+ +|++.+++.+ ..+.+++.|.... .|-.+ +. .+++.. .+++|
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d--~~---~v~~~~~~g~iD 81 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFAD--PL---AAKDSFTDAGFD 81 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS--TT---TTTTSSTTTCCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC--HH---HHHHHHHhCCCC
Confidence 5789999987 8999999999999999 9999998753 3455566664322 23332 21 122222 24899
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+.+++.|.
T Consensus 82 iLVNNAGi 89 (247)
T 4hp8_A 82 ILVNNAGI 89 (247)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999884
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00055 Score=54.50 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=54.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. +.+... ..|-.+ +....+.+.+... +++|
T Consensus 4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 81 (281)
T 3zv4_A 4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRS-LQDQKRAAERCLAAFGKID 81 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcCCCC
Confidence 4689999997 9999999999999999 9999999988777663 444322 123333 1222222322211 3799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 82 ~lvnnAg~ 89 (281)
T 3zv4_A 82 TLIPNAGI 89 (281)
T ss_dssp EEECCCCC
T ss_pred EEEECCCc
Confidence 99999873
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0013 Score=51.42 Aligned_cols=95 Identities=24% Similarity=0.420 Sum_probs=64.9
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhcCCCccE
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~ 143 (255)
++++++||-.|+|. |..++.+++ .|+ +|++++.++...+.+++ .+.. +.... .+..+. ...+.||+
T Consensus 118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~--~d~~~~---~~~~~fD~ 187 (254)
T 2nxc_A 118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLE--GSLEAA---LPFGPFDL 187 (254)
T ss_dssp CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEE--SCHHHH---GGGCCEEE
T ss_pred cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEE--CChhhc---CcCCCCCE
Confidence 67899999999876 777776665 688 99999999988877754 3432 11111 333332 22347999
Q ss_pred EEecCCc---HHHHHHHHHHhccCCceEEEEcc
Q 025257 144 SFECIGN---VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 144 v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
|+.+.-. ...+..+.+.++++ |+++..+.
T Consensus 188 Vv~n~~~~~~~~~l~~~~~~Lkpg-G~lils~~ 219 (254)
T 2nxc_A 188 LVANLYAELHAALAPRYREALVPG-GRALLTGI 219 (254)
T ss_dssp EEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EEECCcHHHHHHHHHHHHHHcCCC-CEEEEEee
Confidence 9965422 23467788899997 99988765
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00055 Score=54.33 Aligned_cols=78 Identities=22% Similarity=0.352 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCC-cE----EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGV-TE----FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~-~~----vi~~~~~~~~~~~~i~~~~~- 138 (255)
+++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++.+. .. ..|-.+ ++.+.+.+.+...
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRSQ 108 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC-HHHHHHHHHHHHHh
Confidence 4679999997 9999999999999999 999999988766554 22332 11 124333 1223332332211
Q ss_pred -CCccEEEecCC
Q 025257 139 -GGVDYSFECIG 149 (255)
Q Consensus 139 -~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 109 ~g~iD~vi~~Ag 120 (279)
T 1xg5_A 109 HSGVDICINNAG 120 (279)
T ss_dssp HCCCSEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 36999999987
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00046 Score=54.30 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcC-Cc-E--EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFG-VT-E--FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g-~~-~--vi~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+ .. . ..|-.+ +..+.+.+.+...
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD-RAQCDALAGRAVEEF 86 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence 4689999997 9999999999999999 999999998776554 2233 11 1 123333 1222222222211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 87 g~id~lvnnAg~ 98 (262)
T 3pk0_A 87 GGIDVVCANAGV 98 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999883
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0024 Score=51.57 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=56.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
.+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+... .+..+.+. ..|+|+-|+..+
T Consensus 22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-------~~~~~~~~-----~aDvvi~~vp~~ 88 (310)
T 3doj_A 22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASVC-------ESPAEVIK-----KCKYTIAMLSDP 88 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC-------SSHHHHHH-----HCSEEEECCSSH
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeEc-------CCHHHHHH-----hCCEEEEEcCCH
Confidence 589999999999999999999999 99999999999999988876421 23333343 368888888765
Q ss_pred HHHHHHH
Q 025257 152 SVMRAAL 158 (255)
Q Consensus 152 ~~~~~~~ 158 (255)
..++..+
T Consensus 89 ~~~~~v~ 95 (310)
T 3doj_A 89 CAALSVV 95 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4355554
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00049 Score=53.76 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=72.2
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCcE---EeCCCCCCchHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVTE---FVNPKDHDKPIQQV 132 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~---vi~~~~~~~~~~~~ 132 (255)
+.....++++++||..|+|. |..+..+++.. +. +|++++.+++..+.+++ .|... ++. .+..
T Consensus 85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~-- 155 (255)
T 3mb5_A 85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEG-RVVSYEIREDFAKLAWENIKWAGFDDRVTIKL-----KDIY-- 155 (255)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC-----SCGG--
T ss_pred HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCe-EEEEEecCHHHHHHHHHHHHHcCCCCceEEEE-----Cchh--
Confidence 45677889999999999986 88888899885 45 99999999988877754 35322 221 1221
Q ss_pred HHhhcCC-CccEEEecCCcH-HHHHHHHHHhccCCceEEEEcc
Q 025257 133 LVDLTDG-GVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 133 i~~~~~~-~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.... .+|+|+-....+ ..++.+.+.|+++ |+++.+..
T Consensus 156 --~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 195 (255)
T 3mb5_A 156 --EGIEEENVDHVILDLPQPERVVEHAAKALKPG-GFFVAYTP 195 (255)
T ss_dssp --GCCCCCSEEEEEECSSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred --hccCCCCcCEEEECCCCHHHHHHHHHHHcCCC-CEEEEEEC
Confidence 11223 799999766654 3589999999997 99987743
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00045 Score=53.38 Aligned_cols=96 Identities=10% Similarity=0.103 Sum_probs=63.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
.+|||+|+ |.+|..+++.+...| + +|+++++++++.+.+...++..+ .|..+ .+ .+.+... ++|+|+.+.
T Consensus 24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d--~~---~~~~~~~-~~D~vv~~a 96 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQIIMGDVLN--HA---ALKQAMQ-GQDIVYANL 96 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEEEEECCTTC--HH---HHHHHHT-TCSEEEEEC
T ss_pred cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcEEEEecCCC--HH---HHHHHhc-CCCEEEEcC
Confidence 58999997 999999999999999 8 99999998876544322233322 23332 22 2333222 589999988
Q ss_pred CcHHH---HHHHHHHhccC-CceEEEEccC
Q 025257 149 GNVSV---MRAALECCHKG-WGTSVIVGVA 174 (255)
Q Consensus 149 g~~~~---~~~~~~~l~~~-~G~~v~~g~~ 174 (255)
+.... .+.+++.++.. .+++|.++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~ 126 (236)
T 3qvo_A 97 TGEDLDIQANSVIAAMKACDVKRLIFVLSL 126 (236)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCchhHHHHHHHHHHHHcCCCEEEEEecc
Confidence 86441 34455555442 2589888764
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00068 Score=52.70 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcC-C-cEE--eCC--CCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFG-V-TEF--VNP--KDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g-~-~~v--i~~--~~~~~~~~~~i~~~~~ 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+ . ..+ ++. .+ ...+.+.+.+...
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~-~~~~~~~~~~~~~ 90 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENAT-AQQYRELAARVEH 90 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCC-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCC-HHHHHHHHHHHHH
Confidence 5789999997 9999999999999999 9999999987766552 233 1 112 222 22 1222222222211
Q ss_pred --CCccEEEecCCc
Q 025257 139 --GGVDYSFECIGN 150 (255)
Q Consensus 139 --~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 91 ~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 91 EFGRLDGLLHNASI 104 (247)
T ss_dssp HHSCCSEEEECCCC
T ss_pred hCCCCCEEEECCcc
Confidence 379999998874
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00049 Score=54.71 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=52.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCC---cE-E--eCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGV---TE-F--VNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~---~~-v--i~~~~~~~~~~~~i~~~~~ 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+. .. . .|-.+ ++...+.+.+...
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 87 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN-EDETARAVDAVTA 87 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC-HHHHHHHHHHHHH
Confidence 4689999997 9999999999999999 999999988765544 33332 11 1 23333 1223333332221
Q ss_pred --CCccEEEecCCc
Q 025257 139 --GGVDYSFECIGN 150 (255)
Q Consensus 139 --~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 88 ~~g~id~lv~nAg~ 101 (281)
T 3svt_A 88 WHGRLHGVVHCAGG 101 (281)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCCCEEEECCCc
Confidence 379999999884
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00063 Score=53.46 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC--cE-EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV--TE-FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~--~~-vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ +++.. .. ..|-.+ ++.+.+.+.+... +++|
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~iD 83 (260)
T 1nff_A 6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGGLH 83 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4678999997 9999999999999999 999999988776654 33332 11 124333 1223333332211 2699
Q ss_pred EEEecCC
Q 025257 143 YSFECIG 149 (255)
Q Consensus 143 ~v~d~~g 149 (255)
+++++.|
T Consensus 84 ~lv~~Ag 90 (260)
T 1nff_A 84 VLVNNAG 90 (260)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999887
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0011 Score=50.92 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=51.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCC--cE-EeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGV--TE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~--~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +++. .. ..|-.+ .+-.+.+-+.....+|++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~d~lv~ 78 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLAS--HQEVEQLFEQLDSIPSTVVH 78 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTTC--HHHHHHHHHSCSSCCSEEEE
T ss_pred CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCCC--HHHHHHHHHHHhhcCCEEEE
Confidence 36899997 8999999999999999 9999999988877764 4432 22 234433 33333332222234599999
Q ss_pred cCC
Q 025257 147 CIG 149 (255)
Q Consensus 147 ~~g 149 (255)
+.|
T Consensus 79 ~Ag 81 (230)
T 3guy_A 79 SAG 81 (230)
T ss_dssp CCC
T ss_pred eCC
Confidence 888
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00052 Score=54.33 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCC--cE-EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGV--TE-FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~--~~-vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+. .. ..|-.+ +..+.+.+.+... +
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND-ATAVDALVESTLKEFG 104 (270)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999999999999 999999988776554 22332 21 234433 1223222332211 3
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|+++++.|
T Consensus 105 ~iD~lvnnAg 114 (270)
T 3ftp_A 105 ALNVLVNNAG 114 (270)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6999999988
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00062 Score=53.62 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=53.8
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
-.++++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. +.+... ..|-.+ ++.+.+.+.+...
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD-DAQVAHLVDETMKAY 86 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 35789999997 8999999999999999 9999999987766552 234322 124333 1223222322211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 87 g~id~lv~nAg~ 98 (264)
T 3ucx_A 87 GRVDVVINNAFR 98 (264)
T ss_dssp SCCSEEEECCCS
T ss_pred CCCcEEEECCCC
Confidence 379999998864
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0011 Score=53.55 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=62.3
Q ss_pred CEEEEEcCChHHHHHHHHHHH--cCCCeEEEE-cCCcch--HHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEE
Q 025257 72 SIVAVFGLGTVGLAVAEGAKA--AGASRVIGI-DIDPKK--FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSF 145 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~--~g~~~v~~~-~~~~~~--~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~ 145 (255)
-+|.|+|+|.+|...+..+.. .+. +++++ ++++++ .+.++++|..... .++ +++.+.+++ ++|+|+
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~-elvav~d~~~~~~~~~~a~~~g~~~~~------~~~-e~ll~~~~~~~iDvV~ 76 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYL-EMGAMVGIDAASDGLARAQRMGVTTTY------AGV-EGLIKLPEFADIDFVF 76 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSE-EEEEEECSCTTCHHHHHHHHTTCCEES------SHH-HHHHHSGGGGGEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCe-EEEEEEeCChhhhHHHHHHHcCCCccc------CCH-HHHHhccCCCCCcEEE
Confidence 478999999999998887743 466 55554 555555 4566778865321 233 334333333 799999
Q ss_pred ecCCcHHHHHHHHHHhcc--CCceEEEE
Q 025257 146 ECIGNVSVMRAALECCHK--GWGTSVIV 171 (255)
Q Consensus 146 d~~g~~~~~~~~~~~l~~--~~G~~v~~ 171 (255)
+|++.....+.+...++. | .+++..
T Consensus 77 ~atp~~~h~~~a~~al~a~~G-k~Vi~e 103 (312)
T 1nvm_B 77 DATSASAHVQNEALLRQAKPG-IRLIDL 103 (312)
T ss_dssp ECSCHHHHHHHHHHHHHHCTT-CEEEEC
T ss_pred ECCChHHHHHHHHHHHHhCCC-CEEEEc
Confidence 999987778888888887 7 776653
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00063 Score=53.81 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=52.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE--E-eCCCCCCchHHHHHHhhc--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE--F-VNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~--v-i~~~~~~~~~~~~i~~~~--~~ 139 (255)
.++++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++.+... + .|-.+ ++.+.+.+.+.. -+
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAEIG 107 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCC-HHHHHHHHHHHHHHCC
Confidence 4689999997 9999999999999999 999999988766544 2234321 1 24333 122333333221 13
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 108 ~iD~li~~Ag~ 118 (272)
T 1yb1_A 108 DVSILVNNAGV 118 (272)
T ss_dssp CCSEEEECCCC
T ss_pred CCcEEEECCCc
Confidence 79999999873
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00029 Score=56.16 Aligned_cols=99 Identities=12% Similarity=0.192 Sum_probs=69.6
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCc-E--EeCCCCCCchHHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVT-E--FVNPKDHDKPIQQVLV 134 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~-~--vi~~~~~~~~~~~~i~ 134 (255)
+.....++++.+||-.|+|. |..+..+++..|+ +|++++.+++..+.+++. |.. . ++. .++ .
T Consensus 56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~-----~d~----~ 124 (287)
T 1kpg_A 56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLL-----AGW----E 124 (287)
T ss_dssp HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE-----SCG----G
T ss_pred HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE-----CCh----h
Confidence 45666788999999999875 8888889988899 999999999888877542 321 1 111 111 1
Q ss_pred hhcCCCccEEEec-----CC---cHHHHHHHHHHhccCCceEEEEcc
Q 025257 135 DLTDGGVDYSFEC-----IG---NVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 135 ~~~~~~~d~v~d~-----~g---~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.. +.||+|+.. .+ ....++.+.+.|+++ |+++....
T Consensus 125 ~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 169 (287)
T 1kpg_A 125 QFD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI 169 (287)
T ss_dssp GCC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred hCC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC-CEEEEEEe
Confidence 121 479999854 22 234478889999997 99887654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00057 Score=53.92 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=53.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+... ..|-.+ ++...+.+.+... +
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTD-RHSVAAFAQAAVDTWG 80 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4678999997 8999999999999999 9999999987766552 234322 134333 1223222332221 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 81 ~iD~lVnnAG~ 91 (264)
T 3tfo_A 81 RIDVLVNNAGV 91 (264)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00063 Score=53.39 Aligned_cols=78 Identities=27% Similarity=0.416 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE-E--eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+++++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++... + .|-.+ ++.+.+.+.+... +++|
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id 88 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS-EKDVQTALALAKGKFGRVD 88 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHCCCCC
Confidence 4679999997 9999999999999999 999999988776654 4444321 1 24333 1223333332211 3699
Q ss_pred EEEecCC
Q 025257 143 YSFECIG 149 (255)
Q Consensus 143 ~v~d~~g 149 (255)
+++++.|
T Consensus 89 ~li~~Ag 95 (265)
T 2o23_A 89 VAVNCAG 95 (265)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9999887
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00038 Score=55.35 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC---c--EE-eCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV---T--EF-VNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~---~--~v-i~~~~~~~~~~~~i~~~~~ 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+. . .+ .|-.+ ++.+.+.+.+...
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLK 82 (280)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC-HHHHHHHHHHHHH
Confidence 4678999997 9999999999999999 9999999887765542 2232 2 11 24333 1222222332211
Q ss_pred --CCccEEEecCC
Q 025257 139 --GGVDYSFECIG 149 (255)
Q Consensus 139 --~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 83 ~~g~iD~lv~nAg 95 (280)
T 1xkq_A 83 QFGKIDVLVNNAG 95 (280)
T ss_dssp HHSCCCEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 36999999887
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00059 Score=53.23 Aligned_cols=79 Identities=25% Similarity=0.389 Sum_probs=52.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---E-eCCCCCCchHHHHHHhhc-CCCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---F-VNPKDHDKPIQQVLVDLT-DGGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---v-i~~~~~~~~~~~~i~~~~-~~~~d 142 (255)
.++++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++... + .|-.+ ++.+.+.+.+.. .+++|
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~id 87 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTD-AEAMTAAAAEAEAVAPVS 87 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC-HHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCC-HHHHHHHHHHHHhhCCCc
Confidence 4679999997 9999999999999999 999999988776554 3344221 1 24333 122222222211 13799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 88 ~li~~Ag~ 95 (254)
T 2wsb_A 88 ILVNSAGI 95 (254)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99998873
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00077 Score=53.19 Aligned_cols=79 Identities=20% Similarity=0.371 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh----cCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KN----FGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~----~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++ .+... ..|-.+ ++.+.+.+.+...
T Consensus 20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 97 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAVKEKF 97 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5689999997 9999999999999999 999999988765544 22 24322 124333 1223222322211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 98 g~iD~lvnnAg~ 109 (267)
T 1vl8_A 98 GKLDTVVNAAGI 109 (267)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 369999998873
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00038 Score=54.35 Aligned_cols=79 Identities=30% Similarity=0.401 Sum_probs=53.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCc---EEeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVT---EFVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~---~vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +++.. ...|-.+ ++...+.+.+... +++|
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 85 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTN-PESIEAVLKAITDEFGGVD 85 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHCCCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCC-HHHHHHHHHHHHHHcCCCC
Confidence 5689999997 9999999999999999 9999999988776653 33321 1234433 1223332332221 3799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 86 ~lv~nAg~ 93 (248)
T 3op4_A 86 ILVNNAGI 93 (248)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999883
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00086 Score=53.42 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=52.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC-----CcE-EeCCCCCCchHHHHHHhhcCCCc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG-----VTE-FVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g-----~~~-vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
-++++++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+ ++++ ... ..+. +++.+.+. .+
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~----~~l~~~l~-----~~ 195 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA----RGIEDVIA-----AA 195 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS----TTHHHHHH-----HS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH----HHHHHHHh-----cC
Confidence 4678999999999999999999999996799999998887765 3332 111 2221 34444443 48
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+|++|+..
T Consensus 196 DiVInaTp~ 204 (283)
T 3jyo_A 196 DGVVNATPM 204 (283)
T ss_dssp SEEEECSST
T ss_pred CEEEECCCC
Confidence 999998864
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00068 Score=54.03 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=53.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---cCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N---FGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~---~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. + .+... ..|-.+ +....+.+.+... +
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 104 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD-ELQMRNAVRDLVLKFG 104 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 5689999997 9999999999999999 9999999987766553 2 23221 124333 1223332332221 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 105 ~iD~lVnnAg~ 115 (283)
T 3v8b_A 105 HLDIVVANAGI 115 (283)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998884
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00067 Score=52.74 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=53.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+... ..|-.+ ++.+.+.+.+... +
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISD-IESIQNFFAEIKAENL 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence 4678999997 9999999999999999 9999999887766542 334322 134333 1223333333221 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 82 ~id~li~~Ag~ 92 (247)
T 3lyl_A 82 AIDILVNNAGI 92 (247)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00058 Score=54.76 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=52.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---cCC-c-E--EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N---FGV-T-E--FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~---~g~-~-~--vi~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. + .+. . . ..|-.+ ++.+.+.+.+...
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 117 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD-PGSCADAARTVVDAF 117 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC-HHHHHHHHHHHHHHc
Confidence 5689999997 8999999999999999 9999999988766542 2 231 1 1 124333 1222222222211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 118 g~iD~lvnnAg~ 129 (293)
T 3rih_A 118 GALDVVCANAGI 129 (293)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998883
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00056 Score=53.25 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC----CcEE-eCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG----VTEF-VNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g----~~~v-i~~~~~~~~~~~~i~~~~~--~~ 140 (255)
+++++||+|+ |++|...++.+...|+ +|+++++++++.+.+ +++. ...+ .|..+ ++.+.+.+.+... +.
T Consensus 5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 82 (251)
T 1zk4_A 5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSS
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence 4678999997 9999999999999999 999999988766554 3332 2212 23333 1223332332211 26
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++++.|.
T Consensus 83 id~li~~Ag~ 92 (251)
T 1zk4_A 83 VSTLVNNAGI 92 (251)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999998873
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00083 Score=52.26 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=52.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-CcE-EeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG-VTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-~~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.++. +.. ..|-.+ .+-.+.+.+.. +++|++++
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~-~~id~lv~ 80 (246)
T 2ag5_A 5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK--KKQIDQFANEV-ERLDVLFN 80 (246)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC--HHHHHHHHHHC-SCCSEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCC--HHHHHHHHHHh-CCCCEEEE
Confidence 4678999997 9999999999999999 9999999877665544332 221 134333 33333333322 37999999
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
+.|.
T Consensus 81 ~Ag~ 84 (246)
T 2ag5_A 81 VAGF 84 (246)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8873
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0007 Score=53.56 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC----cEE-eCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV----TEF-VNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~----~~v-i~~~~~~~~~~~~i~~~~~--~~ 140 (255)
.++++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++. ..+ .|-.+ +..+.+.+.+... ++
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 92 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKHGK 92 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 4678999997 9999999999999999 999999887665544 33321 111 23333 1223333332211 36
Q ss_pred ccEEEecCC
Q 025257 141 VDYSFECIG 149 (255)
Q Consensus 141 ~d~v~d~~g 149 (255)
+|+++++.|
T Consensus 93 id~li~~Ag 101 (278)
T 2bgk_A 93 LDIMFGNVG 101 (278)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCc
Confidence 999999887
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00067 Score=54.00 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc---CCcEE---eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF---GVTEF---VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~---g~~~v---i~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++ +.... .|-.+ +....+.+.+... +
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 84 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGD-EALHEALVELAVRRFG 84 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 8999999999999999 9999999988766653 22 33222 23332 1222222222211 3
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|+++++.|
T Consensus 85 ~iD~lvnnAg 94 (280)
T 3tox_A 85 GLDTAFNNAG 94 (280)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999988
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00075 Score=52.97 Aligned_cols=78 Identities=18% Similarity=0.374 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHH-Hhc----CCcE-E--eCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRA-KNF----GVTE-F--VNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~~-~~~----g~~~-v--i~~~~~~~~~~~~i~~~~~- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++ .+.+ +++ +... . .|-.+ ++.+.+.+.+...
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCC-HHHHHHHHHHHHHh
Confidence 4678999997 9999999999999999 99999988776 4443 222 4322 1 23332 1223222332211
Q ss_pred -CCccEEEecCC
Q 025257 139 -GGVDYSFECIG 149 (255)
Q Consensus 139 -~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 81 ~g~iD~lv~~Ag 92 (260)
T 1x1t_A 81 MGRIDILVNNAG 92 (260)
T ss_dssp HSCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 36999999887
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00061 Score=53.20 Aligned_cols=79 Identities=25% Similarity=0.305 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+... ..|-.+ ++.+.+.+.+... +
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSD-PESAKAMADRTLAEFG 85 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999999999999 9999999988766552 224321 123333 1222222222211 2
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 86 ~id~li~~Ag~ 96 (253)
T 3qiv_A 86 GIDYLVNNAAI 96 (253)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999874
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00075 Score=53.05 Aligned_cols=79 Identities=22% Similarity=0.435 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.|... ..|-.+ ++.+.+.+.+... +
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 83 (262)
T 1zem_A 6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDFG 83 (262)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhC
Confidence 4679999997 9999999999999999 9999999887665542 234321 124333 1222222222211 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 84 ~id~lv~nAg~ 94 (262)
T 1zem_A 84 KIDFLFNNAGY 94 (262)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 69999998873
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.001 Score=52.22 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=35.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 111 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~ 111 (255)
+++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus 6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 47 (264)
T 2pd6_A 6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET 47 (264)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence 4678999997 9999999999999999 999999988776654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00045 Score=54.35 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=53.9
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
.+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+... ..|-.+ ++.+.+.+.+...
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH-SDAIAAFATGVLAAH 104 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHhc
Confidence 35689999997 9999999999999999 9999999987766542 234321 134333 1223322322211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+.+|++++++|.
T Consensus 105 g~id~lv~~Ag~ 116 (262)
T 3rkr_A 105 GRCDVLVNNAGV 116 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 369999999885
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00043 Score=54.11 Aligned_cols=88 Identities=27% Similarity=0.391 Sum_probs=56.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc-------------------chHHHHH----hcCCc-EE--eCCCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-------------------KKFDRAK----NFGVT-EF--VNPKD 124 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~-------------------~~~~~~~----~~g~~-~v--i~~~~ 124 (255)
+.+|+|.|+|++|..+++.+...|+.++++++++. .|.+.++ ++... .+ ++..-
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 110 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL 110 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 47999999999999999999999987899999876 5655542 33222 12 22111
Q ss_pred CCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhcc
Q 025257 125 HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHK 163 (255)
Q Consensus 125 ~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~ 163 (255)
.+ +.+.+... ++|+|++|++....-..+.+.+..
T Consensus 111 -~~---~~~~~~~~-~~DvVi~~~d~~~~~~~l~~~~~~ 144 (249)
T 1jw9_B 111 -DD---AELAALIA-EHDLVLDCTDNVAVRNQLNAGCFA 144 (249)
T ss_dssp -CH---HHHHHHHH-TSSEEEECCSSHHHHHHHHHHHHH
T ss_pred -CH---hHHHHHHh-CCCEEEEeCCCHHHHHHHHHHHHH
Confidence 01 11222211 699999999987744444444444
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00059 Score=54.23 Aligned_cols=79 Identities=30% Similarity=0.415 Sum_probs=54.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc--E-EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVT--E-FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~--~-vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++.. . ..|-.+ ++...+.+.+... +++|
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 105 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSD-EQQIIAMVDACVAAFGGVD 105 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTC-HHHHHHHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4689999997 8999999999999999 999999998876665 444432 1 124333 1222222322211 3799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 106 ~lvnnAg~ 113 (277)
T 3gvc_A 106 KLVANAGV 113 (277)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999884
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0007 Score=53.82 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=52.2
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
.+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+... ..|-.+ ++...+.+.+...
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS-TDEVHAAVAAAVERF 99 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 35689999997 9999999999999999 999999988776554 2334322 124333 1223222332221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 100 g~id~lv~nAg~ 111 (279)
T 3sju_A 100 GPIGILVNSAGR 111 (279)
T ss_dssp CSCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 379999999884
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00056 Score=53.64 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=53.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+... ..|-.+ +....+.+.+... +
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 88 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD-EQHREAVIKAALDQFG 88 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999999889999 9999999887765542 334322 124333 1222222332221 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 89 ~id~lv~nAg~ 99 (256)
T 3gaf_A 89 KITVLVNNAGG 99 (256)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00069 Score=53.44 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=53.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h----cCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N----FGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~----~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. + .+... ..|-.+ ++...+.+.+...
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE-PDAPAELARRAAEAF 96 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-TTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence 4689999997 9999999999999999 9999999887765542 1 34321 134333 2333333332221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 97 g~id~lv~nAg~ 108 (266)
T 4egf_A 97 GGLDVLVNNAGI 108 (266)
T ss_dssp TSCSEEEEECCC
T ss_pred CCCCEEEECCCc
Confidence 379999998873
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0009 Score=53.10 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhc--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~--~~ 139 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.|... ..|-.+ ++.+.+.+.+.. -+
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERYG 98 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 4679999997 9999999999999999 999999988765543 2234321 124333 122322233221 13
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|+++++.|
T Consensus 99 ~iD~lv~~Ag 108 (277)
T 2rhc_B 99 PVDVLVNNAG 108 (277)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999887
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00063 Score=53.89 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=53.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC--cE-EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV--TE-FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~--~~-vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++. .. ..|-.+ ++...+.+.+... +++|
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 104 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTD-PDSVRALFTATVEKFGRVD 104 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 5688999997 8999999999999999 999999998876665 44442 21 124333 1223222332211 3799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 105 ~lVnnAg~ 112 (272)
T 4dyv_A 105 VLFNNAGT 112 (272)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998874
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00087 Score=53.04 Aligned_cols=79 Identities=27% Similarity=0.351 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcEE---eCCCCCCchHHHHHHhhc--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~--~~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.|.... .|-.+ ++.+.+.+.+.. .+
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 102 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTS-ESEIIEAFARLDEQGI 102 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHCC
Confidence 4689999997 9999999999999999 999999988776554 23343322 23322 122332233221 13
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 103 ~iD~lv~nAg~ 113 (271)
T 4ibo_A 103 DVDILVNNAGI 113 (271)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999883
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0007 Score=53.74 Aligned_cols=79 Identities=28% Similarity=0.356 Sum_probs=53.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCc--EE-eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVT--EF-VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~--~v-i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +.+.. .+ .|-.+ +..+.+.+.+... +++|
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~id 81 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTD-GERIDVVAADVLARYGRVD 81 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCS
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCC-HHHHHHHHHHHHHhCCCCC
Confidence 4578999997 9999999999999999 9999999988777663 44422 11 24333 1223222332211 2699
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 82 ~lv~~Ag~ 89 (281)
T 3m1a_A 82 VLVNNAGR 89 (281)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999883
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00048 Score=55.31 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC---cE---EeCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV---TE---FVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~---~~---vi~~~~~~~~~~~~i~~~~~ 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+. .. ..|-.+ ++.+.+.+.+...
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLA 102 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC-HHHHHHHHHHHHH
Confidence 4678999997 9999999999999999 9999999887765542 2232 21 124333 1223222322211
Q ss_pred --CCccEEEecCC
Q 025257 139 --GGVDYSFECIG 149 (255)
Q Consensus 139 --~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 103 ~~g~iD~lvnnAG 115 (297)
T 1xhl_A 103 KFGKIDILVNNAG 115 (297)
T ss_dssp HHSCCCEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 37999999887
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.30 E-value=6.2e-05 Score=57.36 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=70.6
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
+.....+.++++||..|+|. |..+..+++..| . +|++++.+++..+.+++ .|.+.+- ... .+..+ .
T Consensus 69 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~-~~~--~d~~~---~ 140 (215)
T 2yxe_A 69 MCELLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDG-LVVSIERIPELAEKAERTLRKLGYDNVI-VIV--GDGTL---G 140 (215)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHTCTTEE-EEE--SCGGG---C
T ss_pred HHHhhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCeE-EEE--CCccc---C
Confidence 44666788999999999984 888889999886 5 99999999988777754 2432211 000 11111 1
Q ss_pred hc-CCCccEEEecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 136 LT-DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.. .+.||+|+.+..-....+.+.+.|+++ |+++..-.
T Consensus 141 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~lv~~~~ 178 (215)
T 2yxe_A 141 YEPLAPYDRIYTTAAGPKIPEPLIRQLKDG-GKLLMPVG 178 (215)
T ss_dssp CGGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred CCCCCCeeEEEECCchHHHHHHHHHHcCCC-cEEEEEEC
Confidence 11 237999997766555357888999997 98877633
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00087 Score=52.81 Aligned_cols=79 Identities=20% Similarity=0.175 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----h-cCCc-E-E--eCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----N-FGVT-E-F--VNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~-~g~~-~-v--i~~~~~~~~~~~~i~~~~~- 138 (255)
.++++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. + .+.. . . .|-.+ +....+.+.+...
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD-ALQVRAFAEACERT 84 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC-HHHHHHHHHHHHHH
Confidence 4689999997 8999999999999999 9999999887765542 1 2321 1 1 24333 1222222222211
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 85 ~g~id~lvnnAg~ 97 (265)
T 3lf2_A 85 LGCASILVNNAGQ 97 (265)
T ss_dssp HCSCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 379999999884
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00067 Score=52.64 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----cCCcE--E-eCCCCCCchHHHHHHhhc--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----FGVTE--F-VNPKDHDKPIQQVLVDLT--D 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----~g~~~--v-i~~~~~~~~~~~~i~~~~--~ 138 (255)
+++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+ .+... + .|-.+ +..+.+.+.+.. -
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS-EESINKAFEEIYNLV 83 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC-HHHHHHHHHHHHHhc
Confidence 4678999997 9999999999999999 99999998876655422 24321 1 23333 122333333221 1
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 84 ~~~d~vi~~Ag~ 95 (248)
T 2pnf_A 84 DGIDILVNNAGI 95 (248)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998873
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0003 Score=55.49 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=68.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCc-EEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.++.+||..|+|. |..+..+++.. |. +|++++.+++..+.+++.+.. .++.... .++ ....+.||+|+.
T Consensus 84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~--~~~-----~~~~~~fD~v~~ 154 (269)
T 1p91_A 84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS--HRL-----PFSDTSMDAIIR 154 (269)
T ss_dssp TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT--TSC-----SBCTTCEEEEEE
T ss_pred CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcch--hhC-----CCCCCceeEEEE
Confidence 6789999999987 88888998876 67 999999999999998776532 2221111 111 112237999996
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
..... .+..+.+.|+++ |+++....
T Consensus 155 ~~~~~-~l~~~~~~L~pg-G~l~~~~~ 179 (269)
T 1p91_A 155 IYAPC-KAEELARVVKPG-GWVITATP 179 (269)
T ss_dssp ESCCC-CHHHHHHHEEEE-EEEEEEEE
T ss_pred eCChh-hHHHHHHhcCCC-cEEEEEEc
Confidence 54444 489999999997 99887754
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0014 Score=51.33 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=71.2
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc----EEeCCCCCCchHHHHHHhhc
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT----EFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~----~vi~~~~~~~~~~~~i~~~~ 137 (255)
+.....++++.+||-.|+| .|..+..+++..|+ +|++++.+++..+.+++.... .++...- .++ ...
T Consensus 47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~--~~~-----~~~ 117 (266)
T 3ujc_A 47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDI--LTK-----EFP 117 (266)
T ss_dssp HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCT--TTC-----CCC
T ss_pred HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc--ccC-----CCC
Confidence 4566678899999999988 48888888887788 999999999999998765422 1111110 110 111
Q ss_pred CCCccEEEecCCc--------HHHHHHHHHHhccCCceEEEEcc
Q 025257 138 DGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 ~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.||+|+....- ...+..+.+.|+++ |+++....
T Consensus 118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 160 (266)
T 3ujc_A 118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT-GTLLITDY 160 (266)
T ss_dssp TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC-CEEEEEEe
Confidence 2379999865321 22368888899997 99888754
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00087 Score=52.43 Aligned_cols=78 Identities=27% Similarity=0.418 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc--EE-eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVT--EF-VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~--~v-i~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++.+.. .+ .|-.+ +..+.+.+.+... +
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN-TESVQNAVRSVHEQEG 89 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999999999999 999999987765443 223432 11 24333 1223333332211 3
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|+++++.|
T Consensus 90 ~id~vi~~Ag 99 (260)
T 3awd_A 90 RVDILVACAG 99 (260)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6999999887
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00077 Score=51.56 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=60.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+. .+...+ .|..+ . +.+.+... ++|+|++++|
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d--~---~~~~~~~~-~~d~vi~~a~ 76 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN-EHLKVKKADVSS--L---DEVCEVCK-GADAVISAFN 76 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC-TTEEEECCCTTC--H---HHHHHHHT-TCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc-CceEEEEecCCC--H---HHHHHHhc-CCCEEEEeCc
Confidence 58999997 9999999999999998 9999999877653321 122222 12222 2 22333322 5999999988
Q ss_pred cHH-----------HHHHHHHHhccC-CceEEEEccC
Q 025257 150 NVS-----------VMRAALECCHKG-WGTSVIVGVA 174 (255)
Q Consensus 150 ~~~-----------~~~~~~~~l~~~-~G~~v~~g~~ 174 (255)
... ....+++.+... -++++.++..
T Consensus 77 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~ 113 (227)
T 3dhn_A 77 PGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA 113 (227)
T ss_dssp C------CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence 641 234455555543 1388888764
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00034 Score=55.71 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc---CC-c-E--EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF---GV-T-E--FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~---g~-~-~--vi~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++ +. . . ..|-.+ ++.+.+.+.+...
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 109 (281)
T 4dry_A 32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD-PDQVAALFAAVRAEF 109 (281)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5789999997 9999999999999999 9999999987766542 22 21 1 1 134333 1223222322211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 110 g~iD~lvnnAG~ 121 (281)
T 4dry_A 110 ARLDLLVNNAGS 121 (281)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00055 Score=52.44 Aligned_cols=87 Identities=14% Similarity=0.224 Sum_probs=59.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
.++++||+|+ +++|.+.++.+...|+ +|++++++++ .|-.+ ++.+.+.+.++ +++|+++++.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~-~~~v~~~~~~~--g~id~lv~nA 67 (223)
T 3uce_A 5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISD-EKSVYHYFETI--GAFDHLIVTA 67 (223)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTC-HHHHHHHHHHH--CSEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCC-HHHHHHHHHHh--CCCCEEEECC
Confidence 4578999997 9999999999988999 9999987654 23332 12233333333 4789999888
Q ss_pred CcH-----------H---------------HHHHHHHHhccCCceEEEEccC
Q 025257 149 GNV-----------S---------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 149 g~~-----------~---------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
|.. . ..+...+.++++ |+++.++..
T Consensus 68 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~~sS~ 118 (223)
T 3uce_A 68 GSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQG-GSITLTSGM 118 (223)
T ss_dssp CCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE-EEEEEECCG
T ss_pred CCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCC-eEEEEecch
Confidence 742 0 123344455665 899999764
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0018 Score=53.50 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=65.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
.+|+|+|+|.+|..+++.+.. .. .|.+.+++.++.+.+++......+|..+ .+ .+.+... ++|+|++|++..
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d--~~---~l~~~~~-~~DvVi~~~p~~ 88 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASN--FD---KLVEVMK-EFELVIGALPGF 88 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTC--HH---HHHHHHT-TCSEEEECCCGG
T ss_pred cEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCC--HH---HHHHHHh-CCCEEEEecCCc
Confidence 479999999999999888754 45 8999999998888887654333345443 22 2322222 589999999876
Q ss_pred HHHHHHHHHhccCCceEEEEcc
Q 025257 152 SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 152 ~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.....+-.++..+ -.++.+..
T Consensus 89 ~~~~v~~~~~~~g-~~yvD~s~ 109 (365)
T 3abi_A 89 LGFKSIKAAIKSK-VDMVDVSF 109 (365)
T ss_dssp GHHHHHHHHHHHT-CEEEECCC
T ss_pred ccchHHHHHHhcC-cceEeeec
Confidence 6455666677775 67777653
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0016 Score=50.27 Aligned_cols=101 Identities=16% Similarity=0.258 Sum_probs=67.7
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhc----C-CcEEeCCCCCCchHHHHHHhhc
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNF----G-VTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
....++||++||=.|+|+ |..+..+++..|.. +|++++.+++..+.+++. + ...+...... . +... ..
T Consensus 71 ~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~-p---~~~~-~~ 144 (233)
T 4df3_A 71 IELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARF-P---EKYR-HL 144 (233)
T ss_dssp SCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTC-G---GGGT-TT
T ss_pred hhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccC-c---cccc-cc
Confidence 556799999999999975 88889999988753 899999999888777542 2 2333322210 1 1111 11
Q ss_pred CCCccEEEecCCcH----HHHHHHHHHhccCCceEEEE
Q 025257 138 DGGVDYSFECIGNV----SVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 138 ~~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~ 171 (255)
.+.+|+||.....+ ..+..+.+.|+++ |+++..
T Consensus 145 ~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpG-G~lvI~ 181 (233)
T 4df3_A 145 VEGVDGLYADVAQPEQAAIVVRNARFFLRDG-GYMLMA 181 (233)
T ss_dssp CCCEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cceEEEEEEeccCChhHHHHHHHHHHhccCC-CEEEEE
Confidence 12689888544432 2367778899997 998765
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0026 Score=51.25 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=65.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|.|.|.|.+|...++.++..|. +|++.++++++ +.+.+.|+.. .++.+.+. ..|+|+.++.
T Consensus 141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~--------~~l~ell~-----~aDvV~l~~p 205 (307)
T 1wwk_A 141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKF--------VDLETLLK-----ESDVVTIHVP 205 (307)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEE--------CCHHHHHH-----HCSEEEECCC
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCccc--------cCHHHHHh-----hCCEEEEecC
Confidence 56899999999999999999999999 99999998877 5667777642 12323332 4789988766
Q ss_pred cHH----HH-HHHHHHhccCCceEEEEcc
Q 025257 150 NVS----VM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~~----~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
... .+ +..+..++++ +.++.++.
T Consensus 206 ~~~~t~~li~~~~l~~mk~g-a~lin~ar 233 (307)
T 1wwk_A 206 LVESTYHLINEERLKLMKKT-AILINTSR 233 (307)
T ss_dssp CSTTTTTCBCHHHHHHSCTT-CEEEECSC
T ss_pred CChHHhhhcCHHHHhcCCCC-eEEEECCC
Confidence 321 12 4567888886 88887765
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00078 Score=53.38 Aligned_cols=102 Identities=21% Similarity=0.268 Sum_probs=71.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhc-----C--CcE--EeCCCCCCchHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNF-----G--VTE--FVNPKDHDKPIQ 130 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~~-----g--~~~--vi~~~~~~~~~~ 130 (255)
+.....++++++||..|+| .|..+..+++.. +. +|++++.+++..+.+++. | .+. ++.. +..
T Consensus 91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~-----d~~ 163 (280)
T 1i9g_A 91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAG-QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS-----DLA 163 (280)
T ss_dssp HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS-----CGG
T ss_pred HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEEC-----chH
Confidence 4566788999999999998 588888999875 45 999999999888777542 4 221 2221 111
Q ss_pred HHHHhhcCCCccEEEecCCcH-HHHHHHHHHhccCCceEEEEcc
Q 025257 131 QVLVDLTDGGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 131 ~~i~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+. ....+.+|+|+.....+ ..++.+.+.|+++ |+++.+..
T Consensus 164 ~~--~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 204 (280)
T 1i9g_A 164 DS--ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA 204 (280)
T ss_dssp GC--CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred hc--CCCCCceeEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence 10 11123799999655543 4588999999997 99888754
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0023 Score=49.84 Aligned_cols=72 Identities=22% Similarity=0.161 Sum_probs=50.7
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.+++++||+|+ |++|.+.++.+...|+ +|++++++++. +++++...++ |- . .+..+.+.+.. ++|++++
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~~~~~~~D~-~--~~~~~~~~~~~--~iD~lv~ 87 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVVCDL-R--KDLDLLFEKVK--EVDILVL 87 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEECCT-T--TCHHHHHHHSC--CCSEEEE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHH---HHhhCCeEEEeeH-H--HHHHHHHHHhc--CCCEEEE
Confidence 46789999997 9999999999999999 99999988643 3344422222 32 1 34444343332 6999999
Q ss_pred cCC
Q 025257 147 CIG 149 (255)
Q Consensus 147 ~~g 149 (255)
+.|
T Consensus 88 ~Ag 90 (249)
T 1o5i_A 88 NAG 90 (249)
T ss_dssp CCC
T ss_pred CCC
Confidence 887
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0011 Score=51.87 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=51.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE--E-eCCCCCCchHHHHHHhhc--CCC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE--F-VNPKDHDKPIQQVLVDLT--DGG 140 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~--v-i~~~~~~~~~~~~i~~~~--~~~ 140 (255)
++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+... + .|-.+ ++.+.+.+.+.. -++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC
Confidence 468999997 9999999999999999 9999999887665442 234321 1 24333 122333333221 137
Q ss_pred ccEEEecCC
Q 025257 141 VDYSFECIG 149 (255)
Q Consensus 141 ~d~v~d~~g 149 (255)
+|+++++.|
T Consensus 80 id~lv~nAg 88 (256)
T 1geg_A 80 FDVIVNNAG 88 (256)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 999999887
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00057 Score=50.55 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=66.3
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--EEeCCCCCCchHHHHHHhhc
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT--EFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~i~~~~ 137 (255)
....++++++||-.|+|. |..+..+++. +. +|++++.+++..+.+++ .|.+ .++.... . .+....
T Consensus 16 l~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~--~----~l~~~~ 86 (185)
T 3mti_A 16 LAEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDGH--E----NLDHYV 86 (185)
T ss_dssp HHTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCG--G----GGGGTC
T ss_pred HHHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcH--H----HHHhhc
Confidence 345678999999999875 7788888877 77 99999999988777743 3432 2222111 1 122223
Q ss_pred CCCccEEEecCCc---------------HHHHHHHHHHhccCCceEEEEcc
Q 025257 138 DGGVDYSFECIGN---------------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 ~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
++.||+|+-..+. ...++.+.+.|+++ |+++.+..
T Consensus 87 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 136 (185)
T 3mti_A 87 REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIY 136 (185)
T ss_dssp CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 3379999855321 12357888999997 99887744
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00081 Score=54.00 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=52.4
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCC-c--E-EeCCCCCCc-hHH----HHHH
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGV-T--E-FVNPKDHDK-PIQ----QVLV 134 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~-~--~-vi~~~~~~~-~~~----~~i~ 134 (255)
.+++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++.+. . . ..|-.+ . +-. +.+.
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~v~~~~~~~~ 86 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD--PIATMSSLADFIK 86 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS--CHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC--cHHHHHHHHHHHH
Confidence 35689999997 9999999999999999 999999998775544 22232 1 1 234443 3 322 2232
Q ss_pred hhcCCCccEEEecCCc
Q 025257 135 DLTDGGVDYSFECIGN 150 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~ 150 (255)
+.. +++|+++++.|.
T Consensus 87 ~~~-g~iD~lv~nAg~ 101 (311)
T 3o26_A 87 THF-GKLDILVNNAGV 101 (311)
T ss_dssp HHH-SSCCEEEECCCC
T ss_pred HhC-CCCCEEEECCcc
Confidence 222 379999999984
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0011 Score=51.94 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=50.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhcCCcEE---eCCCCCCchHHHHHHhhcC--CCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK--FDRAKNFGVTEF---VNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~--~~~~~~~g~~~v---i~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++ .+.+++.+.... .|-.+ ++.+.+.+.+... +++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~i 80 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDPAPALAEIARHGVKAVHHPADLSD-VAQIEALFALAEREFGGV 80 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTSCCEEEECCCTTS-HHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHhcCCceEEEeCCCCC-HHHHHHHHHHHHHHcCCC
Confidence 4678999997 9999999999999999 99999987652 122233343221 23332 1223332332211 379
Q ss_pred cEEEecCC
Q 025257 142 DYSFECIG 149 (255)
Q Consensus 142 d~v~d~~g 149 (255)
|+++++.|
T Consensus 81 d~lv~~Ag 88 (255)
T 2q2v_A 81 DILVNNAG 88 (255)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99999887
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00087 Score=52.28 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=52.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc--E-EeCCCCCCchHHHHHHhhcC--CCccEE
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVT--E-FVNPKDHDKPIQQVLVDLTD--GGVDYS 144 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~--~-vi~~~~~~~~~~~~i~~~~~--~~~d~v 144 (255)
+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++.. . ..|-.+ ++.+.+.+.+... +++|++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~l 78 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWCNIDIL 78 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHTSCTTTCCCCEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHhCCCCCEE
Confidence 36899997 8999999999999999 999999988776665 334422 1 124333 1234344444332 279999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+++.|.
T Consensus 79 vnnAg~ 84 (248)
T 3asu_A 79 VNNAGL 84 (248)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 998873
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00073 Score=53.01 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE--E-eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE--F-VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~--v-i~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+... + .|-.+ ++.+.+.+.+... +
T Consensus 13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 90 (260)
T 2zat_A 13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK-AEDRERLVAMAVNLHG 90 (260)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4689999997 9999999999999999 999999988765543 2234321 1 23332 1222222222211 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 91 ~iD~lv~~Ag~ 101 (260)
T 2zat_A 91 GVDILVSNAAV 101 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00088 Score=55.04 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-----------HHHHHhcCCcE---EeCCCCCCchHHHHHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-----------FDRAKNFGVTE---FVNPKDHDKPIQQVLV 134 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-----------~~~~~~~g~~~---vi~~~~~~~~~~~~i~ 134 (255)
.++++||+|+ +++|.+.++.+...|+ +|+++++++++ .+.+++.|... ..|-.+ ++.+.+.+.
T Consensus 44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~ 121 (346)
T 3kvo_A 44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD-EQQISAAVE 121 (346)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHH
Confidence 5689999997 9999999999999999 99999988764 22334445322 134443 122332333
Q ss_pred hhcC--CCccEEEecCCc
Q 025257 135 DLTD--GGVDYSFECIGN 150 (255)
Q Consensus 135 ~~~~--~~~d~v~d~~g~ 150 (255)
+... +++|+++++.|.
T Consensus 122 ~~~~~~g~iDilVnnAG~ 139 (346)
T 3kvo_A 122 KAIKKFGGIDILVNNASA 139 (346)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2221 379999999884
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0024 Score=53.74 Aligned_cols=95 Identities=15% Similarity=0.240 Sum_probs=67.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
.+.+|+|.|.|.+|..+++.++..|. .|++++.++++.+.+++.|...++ |..+ .+ .++...-..+|+++-++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~GDat~--~~---~L~~agi~~A~~viv~~ 76 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFYGDATR--MD---LLESAGAAKAEVLINAI 76 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEESCTTC--HH---HHHHTTTTTCSEEEECC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEEcCCCC--HH---HHHhcCCCccCEEEECC
Confidence 34679999999999999999999999 999999999999999998876554 3332 32 23333112799999999
Q ss_pred CcHHHHHH---HHHHhccCCceEEEE
Q 025257 149 GNVSVMRA---ALECCHKGWGTSVIV 171 (255)
Q Consensus 149 g~~~~~~~---~~~~l~~~~G~~v~~ 171 (255)
+....-.. ..+.+.+. .+++.-
T Consensus 77 ~~~~~n~~i~~~ar~~~p~-~~Iiar 101 (413)
T 3l9w_A 77 DDPQTNLQLTEMVKEHFPH-LQIIAR 101 (413)
T ss_dssp SSHHHHHHHHHHHHHHCTT-CEEEEE
T ss_pred CChHHHHHHHHHHHHhCCC-CeEEEE
Confidence 87653333 33344453 455544
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00076 Score=53.04 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE--E-eCCCCCCchHHHHH---HhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE--F-VNPKDHDKPIQQVL---VDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~--v-i~~~~~~~~~~~~i---~~~~~ 138 (255)
+++++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++.+... + .|-.+ +..+.+.+ .+..+
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSSMFG 90 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 4678999997 9999999999999999 999999987765543 2234321 1 23332 12222222 22222
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 91 ~~id~li~~Ag~ 102 (266)
T 1xq1_A 91 GKLDILINNLGA 102 (266)
T ss_dssp TCCSEEEEECCC
T ss_pred CCCcEEEECCCC
Confidence 479999998874
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.002 Score=52.80 Aligned_cols=98 Identities=30% Similarity=0.294 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCC-----CC-------c-hH-HHHHH
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD-----HD-------K-PI-QQVLV 134 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-----~~-------~-~~-~~~i~ 134 (255)
-+|++|.|.|.|.+|+.+++.++..|+ +|++.+.++++.+..+++|++.+ +..+ ++ . .+ .+.+.
T Consensus 173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~ 250 (355)
T 1c1d_A 173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR 250 (355)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh
Confidence 578999999999999999999999999 99988887766555666775432 1110 00 0 00 01111
Q ss_pred hhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEc
Q 025257 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.+ +.++|+++...+...+.+.+.|..+ |.++.-+
T Consensus 251 ~l---k~~iVie~AN~p~t~~eA~~~L~~~-gIlv~Pd 284 (355)
T 1c1d_A 251 TL---DCSVVAGAANNVIADEAASDILHAR-GILYAPD 284 (355)
T ss_dssp HC---CCSEECCSCTTCBCSHHHHHHHHHT-TCEECCH
T ss_pred hC---CCCEEEECCCCCCCCHHHHHHHHhC-CEEEECC
Confidence 11 4667777666655233556667765 6555433
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00099 Score=51.77 Aligned_cols=75 Identities=15% Similarity=0.063 Sum_probs=52.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-c--CCcchHHHH-Hhc-CCcEEeCCCCCCchHHHHHHhhcCCCccEE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-D--IDPKKFDRA-KNF-GVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~--~~~~~~~~~-~~~-g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
++++||+|+ |++|.+.++.+...|+ +|+++ + +++++.+.+ +++ +.+ +.+..+ -..+.+.+.+.. +++|++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~-g~iD~l 76 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGTI-ALAEQK-PERLVDATLQHG-EAIDTI 76 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTEE-ECCCCC-GGGHHHHHGGGS-SCEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCCc-ccCHHH-HHHHHHHHHHHc-CCCCEE
Confidence 367999997 8999999999999999 99999 6 888776655 344 332 333332 133444454433 379999
Q ss_pred EecCC
Q 025257 145 FECIG 149 (255)
Q Consensus 145 ~d~~g 149 (255)
+++.|
T Consensus 77 v~~Ag 81 (244)
T 1zmo_A 77 VSNDY 81 (244)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99887
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0043 Score=49.83 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=55.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|........+ + .+ ...|+|+.|+..+
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~--e----~~-----~~aDvvi~~vp~~ 75 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACGAAASAR--E----FA-----GVVDALVILVVNA 75 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEESSST--T----TT-----TTCSEEEECCSSH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccCCHH--H----HH-----hcCCEEEEECCCH
Confidence 579999999999999999999999 9999999999999998888754222221 1 01 1467888777765
Q ss_pred HHHHHHH
Q 025257 152 SVMRAAL 158 (255)
Q Consensus 152 ~~~~~~~ 158 (255)
...+..+
T Consensus 76 ~~~~~v~ 82 (303)
T 3g0o_A 76 AQVRQVL 82 (303)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4355543
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00066 Score=52.67 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=53.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhc-CCc--E-EeCCCCCCchHHH---HHHhhcCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAKNF-GVT--E-FVNPKDHDKPIQQ---VLVDLTDG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~~-g~~--~-vi~~~~~~~~~~~---~i~~~~~~ 139 (255)
+++++||+|+ |++|..+++.+...| + +|+++++++++.+.++++ +.. . ..|-.+ +..+.+ .+.+..+.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~ 79 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTC-DKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTC-HHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCC-HHHHHHHHHHHHHhcCC
Confidence 3578999997 999999999999899 8 999999998887777665 322 1 123333 122222 23222332
Q ss_pred -CccEEEecCC
Q 025257 140 -GVDYSFECIG 149 (255)
Q Consensus 140 -~~d~v~d~~g 149 (255)
++|+++++.|
T Consensus 80 ~~id~li~~Ag 90 (250)
T 1yo6_A 80 DGLSLLINNAG 90 (250)
T ss_dssp GCCCEEEECCC
T ss_pred CCCcEEEECCc
Confidence 6999999886
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00092 Score=53.03 Aligned_cols=77 Identities=23% Similarity=0.215 Sum_probs=53.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE--E-eCCCCCCchH---HHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE--F-VNPKDHDKPI---QQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~--v-i~~~~~~~~~---~~~i~~~~~ 138 (255)
.++++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. +.+... + .|-.+ +... .+.+.+.
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~-- 107 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE-AGAGTDLIERAEAI-- 107 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS-TTHHHHHHHHHHHH--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC-HHHHHHHHHHHHHh--
Confidence 5689999997 9999999999999999 9999999887655542 234321 1 23333 1222 2333333
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 108 g~iD~lvnnAg~ 119 (275)
T 4imr_A 108 APVDILVINASA 119 (275)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 479999999883
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00083 Score=52.71 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=51.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCcEE---eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++ .+++++.+.+ ++.+.... .|-.+ +..+.+.+.+...
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ-PAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5789999997 9999999999999999 98886 7777665554 23343221 24333 1223222332211
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 81 g~id~lv~nAg 91 (258)
T 3oid_A 81 GRLDVFVNNAA 91 (258)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37999999987
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00062 Score=53.54 Aligned_cols=78 Identities=9% Similarity=0.167 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcC---CCeEEEEcCCcchHHHHHhc---CCc--EE-eCCCCCCchHHH---HHHhh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAG---ASRVIGIDIDPKKFDRAKNF---GVT--EF-VNPKDHDKPIQQ---VLVDL 136 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g---~~~v~~~~~~~~~~~~~~~~---g~~--~v-i~~~~~~~~~~~---~i~~~ 136 (255)
++.++||+|+ |++|.++++.+...| + +|+++++++++.+.++++ +.. .+ .|-.+ ++.+.+ .+.+.
T Consensus 20 ~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 97 (267)
T 1sny_A 20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIEGV 97 (267)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCC-hHHHHHHHHHHHHh
Confidence 4578999997 999999999999899 7 999999987765544332 322 11 23333 133333 33333
Q ss_pred cCC-CccEEEecCC
Q 025257 137 TDG-GVDYSFECIG 149 (255)
Q Consensus 137 ~~~-~~d~v~d~~g 149 (255)
.+. ++|++++++|
T Consensus 98 ~g~~~id~li~~Ag 111 (267)
T 1sny_A 98 TKDQGLNVLFNNAG 111 (267)
T ss_dssp HGGGCCSEEEECCC
T ss_pred cCCCCccEEEECCC
Confidence 333 5999999887
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00051 Score=53.75 Aligned_cols=76 Identities=17% Similarity=0.028 Sum_probs=50.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH---hcCCcE-EeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK---NFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~---~~g~~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.|... .++..+ -..+.+.+.+.. +++|++++
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~-v~~~~~~~~~~~-g~iD~lv~ 78 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE-PAELIEAVTSAY-GQVDVLVS 78 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS-HHHHHHHHHHHH-SCCCEEEE
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEECHHH-HHHHHHHHHHHh-CCCCEEEE
Confidence 46899997 8999999999999999 9999998887665543 224322 222221 112233333322 37999999
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
+.|.
T Consensus 79 nAg~ 82 (254)
T 1zmt_A 79 NDIF 82 (254)
T ss_dssp ECCC
T ss_pred CCCc
Confidence 8874
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0011 Score=56.83 Aligned_cols=92 Identities=23% Similarity=0.260 Sum_probs=69.7
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
.-.|.+|.|.|.|.+|..+++.++..|+ +|+++++++.+.......|... .++.+.+. ..|+|+.+
T Consensus 274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~~--------~~l~ell~-----~aDiVi~~ 339 (494)
T 3d64_A 274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYRV--------VTMEYAAD-----KADIFVTA 339 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCEE--------CCHHHHTT-----TCSEEEEC
T ss_pred ccCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCEe--------CCHHHHHh-----cCCEEEEC
Confidence 3578999999999999999999999999 9999999887654445556532 22333232 58999998
Q ss_pred CCcHHHH-HHHHHHhccCCceEEEEccC
Q 025257 148 IGNVSVM-RAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 148 ~g~~~~~-~~~~~~l~~~~G~~v~~g~~ 174 (255)
++....+ ...++.++++ ..++.+|..
T Consensus 340 ~~t~~lI~~~~l~~MK~g-AilINvgrg 366 (494)
T 3d64_A 340 TGNYHVINHDHMKAMRHN-AIVCNIGHF 366 (494)
T ss_dssp SSSSCSBCHHHHHHCCTT-EEEEECSSS
T ss_pred CCcccccCHHHHhhCCCC-cEEEEcCCC
Confidence 8755433 5778899996 888888764
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00064 Score=53.87 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc---C---C--cEE-eCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF---G---V--TEF-VNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~---g---~--~~v-i~~~~~~~~~~~~i~~~~~ 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++ . . ..+ .|-.+ ++.+.+.+.+...
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 82 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLG 82 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC-HHHHHHHHHHHHH
Confidence 4678999997 9999999999999999 9999999887766542 22 2 1 111 24333 1223222332211
Q ss_pred --CCccEEEecCCc
Q 025257 139 --GGVDYSFECIGN 150 (255)
Q Consensus 139 --~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 83 ~~g~id~lv~~Ag~ 96 (278)
T 1spx_A 83 KFGKLDILVNNAGA 96 (278)
T ss_dssp HHSCCCEEEECCC-
T ss_pred HcCCCCEEEECCCC
Confidence 379999999874
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00067 Score=54.06 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=50.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE--E--eCCCCCCchHHHHHHhhc--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE--F--VNPKDHDKPIQQVLVDLT--D 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~--v--i~~~~~~~~~~~~i~~~~--~ 138 (255)
+++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +.+... + .|-.+ ++.+.+.+.+.. .
T Consensus 27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~ 104 (286)
T 1xu9_A 27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED-MTFAEQFVAQAGKLM 104 (286)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC-HHHHHHHHHHHHHHc
Confidence 4678999998 9999999999999999 9999999987766542 234321 1 23333 122222222221 1
Q ss_pred CCccEEEec
Q 025257 139 GGVDYSFEC 147 (255)
Q Consensus 139 ~~~d~v~d~ 147 (255)
+++|+++++
T Consensus 105 g~iD~li~n 113 (286)
T 1xu9_A 105 GGLDMLILN 113 (286)
T ss_dssp TSCSEEEEC
T ss_pred CCCCEEEEC
Confidence 379999988
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00065 Score=53.59 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hc--CCc--E-EeCCCCCCchHHHHHHhhcCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NF--GVT--E-FVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~--g~~--~-vi~~~~~~~~~~~~i~~~~~~ 139 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+... +. +.. . ..|..+ .+-.+.+.+.. +
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~-g 84 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT--EQGCQDVIEKY-P 84 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS--HHHHHHHHHHC-C
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC--HHHHHHHHHhc-C
Confidence 4688999997 9999999999999999 9999999887655442 22 221 1 123333 33333333322 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 85 ~id~lv~nAg~ 95 (267)
T 3t4x_A 85 KVDILINNLGI 95 (267)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.001 Score=52.38 Aligned_cols=79 Identities=20% Similarity=0.166 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCCcchHHHH----HhcCC--cEE-eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRA----KNFGV--TEF-VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~-~g~~~v~~~~~~~~~~~~~----~~~g~--~~v-i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|..+++.+.. .|+ +|++++++.++.+.+ ++.+. ..+ .|-.+ ...+.+.+.+...
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD-LQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHhc
Confidence 5688999997 9999999988888 899 999999987765543 22232 222 33333 1223332332211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|++++++|.
T Consensus 81 g~id~li~~Ag~ 92 (276)
T 1wma_A 81 GGLDVLVNNAGI 92 (276)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 269999998873
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0012 Score=52.19 Aligned_cols=78 Identities=22% Similarity=0.188 Sum_probs=50.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---cCCcE---EeCCCCCCchHHHHHHhhc--CCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN---FGVTE---FVNPKDHDKPIQQVLVDLT--DGG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~---~g~~~---vi~~~~~~~~~~~~i~~~~--~~~ 140 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++++..+.+++ .+... ..|-.+ .+-.+.+.+.. .++
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~g~ 106 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLAD--LEGAANVAEELAATRR 106 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTC--HHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHhcCC
Confidence 4689999997 8999999999999999 99999976544433333 33221 124333 33222222211 137
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++++.|.
T Consensus 107 iD~lv~nAg~ 116 (273)
T 3uf0_A 107 VDVLVNNAGI 116 (273)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCCC
Confidence 9999998874
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00084 Score=53.18 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=52.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcC----CcEE-eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFG----VTEF-VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g----~~~v-i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++. +..+ .|-.+ ++.+.+.+.+... +.+|
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 99 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRD-RAAMSAAVDNLPEEFATLR 99 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHTCCGGGSSCC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhCCCC
Confidence 68999997 8999999999999999 9999999987766553 232 1111 24333 1233333443322 2689
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 100 ~lvnnAG~ 107 (272)
T 2nwq_A 100 GLINNAGL 107 (272)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998873
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00087 Score=52.12 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=51.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++ ++++.+.+ ++.+... ..|-.+ ++.+.+.+.+...
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN-AEDVTNMVKQTVDVF 80 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4678999997 9999999999999999 9999998 66655443 2234321 124333 1223333332211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 81 g~id~lv~nAg~ 92 (246)
T 2uvd_A 81 GQVDILVNNAGV 92 (246)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999883
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0007 Score=52.84 Aligned_cols=79 Identities=27% Similarity=0.335 Sum_probs=51.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-cchHHHH----HhcCCc--EE-eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFDRA----KNFGVT--EF-VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~-~~~~~~~----~~~g~~--~v-i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|...++.+...|+ +|++++++ +++.+.+ ++.+.. .+ .|-.+ ++.+.+.+.+...
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT-SEACQQLVDEFVAKF 83 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4578999997 9999999999999999 99999988 6655443 222422 11 23333 1223333332221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 84 g~id~vi~~Ag~ 95 (258)
T 3afn_B 84 GGIDVLINNAGG 95 (258)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 269999998874
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.001 Score=51.86 Aligned_cols=75 Identities=25% Similarity=0.279 Sum_probs=50.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhc--CCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~--~~~~d~v~ 145 (255)
+++++||+|+ |++|.+.++.+...|+ +|++++++++. ++.+...+ .|-.+ ++.+.+.+.+.. .+++|+++
T Consensus 6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g~id~lv 79 (250)
T 2fwm_X 6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVAD-AAQVAQVCQRLLAETERLDALV 79 (250)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTC-HHHHHHHHHHHHHHCSCCCEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4678999997 9999999999999999 99999987653 22343222 34333 123333333221 13799999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 80 ~~Ag~ 84 (250)
T 2fwm_X 80 NAAGI 84 (250)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99874
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.003 Score=49.77 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=60.8
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+++++|+|+|++|.+++..+...|. +|+++.|++++.+.+.+++.. .....+ + . .+|+|++|+..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~~~-~~~~~~----l-------~--~~DiVInaTp~ 182 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGCD-CFMEPP----K-------S--AFDLIINATSA 182 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHTCE-EESSCC----S-------S--CCSEEEECCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-EecHHH----h-------c--cCCEEEEcccC
Confidence 8899999999999999999999996 999999999988776677753 333322 1 0 58999998764
Q ss_pred HH----HH--HHHHHHhccCCceEEEE
Q 025257 151 VS----VM--RAALECCHKGWGTSVIV 171 (255)
Q Consensus 151 ~~----~~--~~~~~~l~~~~G~~v~~ 171 (255)
.. .+ +.+...++++ ..++.+
T Consensus 183 Gm~~~~~l~~~~l~~~l~~~-~~v~D~ 208 (269)
T 3phh_A 183 SLHNELPLNKEVLKGYFKEG-KLAYDL 208 (269)
T ss_dssp CCCCSCSSCHHHHHHHHHHC-SEEEES
T ss_pred CCCCCCCCChHHHHhhCCCC-CEEEEe
Confidence 21 01 2222356775 666655
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0029 Score=50.38 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=54.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+... .+..+.+. ..|+|+.|+..+.
T Consensus 3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~advvi~~v~~~~ 69 (287)
T 3pdu_A 3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGARQA-------SSPAEVCA-----ACDITIAMLADPA 69 (287)
T ss_dssp CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCEEC-------SCHHHHHH-----HCSEEEECCSSHH
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec-------CCHHHHHH-----cCCEEEEEcCCHH
Confidence 58899999999999988888898 99999999999998887775421 22333333 3688888887764
Q ss_pred HHHHHH
Q 025257 153 VMRAAL 158 (255)
Q Consensus 153 ~~~~~~ 158 (255)
.++..+
T Consensus 70 ~~~~v~ 75 (287)
T 3pdu_A 70 AAREVC 75 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 355544
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0017 Score=51.52 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=31.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~ 43 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRC 43 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999997 9999999999999999 99999986
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00085 Score=50.31 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=60.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+|+|+|+ |.+|..+++.+...|. +|+++++++++.+.....+...+ .|..+ . +.+.+... ++|+|+++.+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~~--~---~~~~~~~~-~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVLQ--A---ADVDKTVA-GQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTTS--H---HHHHHHHT-TCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCceEEEEecCCC--H---HHHHHHHc-CCCEEEECcc
Confidence 68999998 9999999999998998 99999998776533212233322 23322 2 22333222 5899999988
Q ss_pred cHH----------HHHHHHHHhcc-CCceEEEEccC
Q 025257 150 NVS----------VMRAALECCHK-GWGTSVIVGVA 174 (255)
Q Consensus 150 ~~~----------~~~~~~~~l~~-~~G~~v~~g~~ 174 (255)
... ....+++.+.. +-++++.++..
T Consensus 77 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred CCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 532 13344444433 22588887654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0024 Score=50.49 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=52.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
++++++|+|+|++|.++++.+...|+ +|+++.+++++.+.+ ++++...-++..+ . +.+.+ +.+|++++|+
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~~--~---~~~~~---~~~DivVn~t 188 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALS--M---DELEG---HEFDLIINAT 188 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECC--S---GGGTT---CCCSEEEECC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEec--H---HHhcc---CCCCEEEECC
Confidence 67899999999999999999999997 999999998886555 4454310011111 1 11111 4799999999
Q ss_pred CcHH
Q 025257 149 GNVS 152 (255)
Q Consensus 149 g~~~ 152 (255)
+...
T Consensus 189 ~~~~ 192 (271)
T 1nyt_A 189 SSGI 192 (271)
T ss_dssp SCGG
T ss_pred CCCC
Confidence 9765
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00049 Score=52.82 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=67.4
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhcC-
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~~- 138 (255)
.+..++.+||..|+| .|..+..+++.. +. +|++++.+++..+.+++ .|...-+.... .+..+.+.+...
T Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~--~d~~~~~~~~~~~ 140 (229)
T 2avd_A 65 ARLIQAKKALDLGTF-TGYSALALALALPADG-RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL--KPALETLDELLAA 140 (229)
T ss_dssp HHHTTCCEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE--SCHHHHHHHHHHT
T ss_pred HHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE--cCHHHHHHHHHhc
Confidence 445678899999987 588888888876 45 99999999988777754 34311111111 233333333221
Q ss_pred ---CCccEEEecCCc---HHHHHHHHHHhccCCceEEEEcc
Q 025257 139 ---GGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 139 ---~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.||+|+-.... ...++.+.+.++++ |.++....
T Consensus 141 ~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~~ 180 (229)
T 2avd_A 141 GEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLRV 180 (229)
T ss_dssp TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred CCCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEECC
Confidence 379999844332 23478889999997 99887643
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0019 Score=49.17 Aligned_cols=96 Identities=9% Similarity=0.079 Sum_probs=62.1
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+ .+...+.-.- .+..+.+.+... ++|+|++++|..
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~~~~~~D~---~d~~~~~~~~~~-~~d~vi~~ag~~ 74 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNVKAVHFDV---DWTPEEMAKQLH-GMDAIINVSGSG 74 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTEEEEECCT---TSCHHHHHTTTT-TCSEEEECCCCT
T ss_pred eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCceEEEecc---cCCHHHHHHHHc-CCCEEEECCcCC
Confidence 6999997 9999999999999999 999999987765432 2222221111 111344555443 699999999853
Q ss_pred H---------HHHHHHHHhccC-CceEEEEccCC
Q 025257 152 S---------VMRAALECCHKG-WGTSVIVGVAA 175 (255)
Q Consensus 152 ~---------~~~~~~~~l~~~-~G~~v~~g~~~ 175 (255)
. ....+++.++.. -++++.++...
T Consensus 75 ~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~ 108 (219)
T 3dqp_A 75 GKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF 108 (219)
T ss_dssp TSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 2 133444444442 15888887754
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.001 Score=51.67 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=51.0
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----CCc--EE-eCCCCCCchHHHHHHhhcC--C
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----GVT--EF-VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g~~--~v-i~~~~~~~~~~~~i~~~~~--~ 139 (255)
++++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++ +.. .+ .|-.+ ++.+.+.+.+... +
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 79 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVAD-EGDVNAAIAATMEQFG 79 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhC
Confidence 568999997 9999999999999999 9999999887765542 22 322 11 23333 1223333332211 2
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|+++++.|
T Consensus 80 ~id~li~~Ag 89 (250)
T 2cfc_A 80 AIDVLVNNAG 89 (250)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6999999887
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0015 Score=51.68 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------cchHHHH----HhcCCcEE---eCCCCCCchH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID------------PKKFDRA----KNFGVTEF---VNPKDHDKPI 129 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~------------~~~~~~~----~~~g~~~v---i~~~~~~~~~ 129 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++ +++.+.. ++.+.... .|-.+ ++.+
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v 89 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRD-RESL 89 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTC-HHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHH
Confidence 5689999997 9999999999999999 99999876 3333332 23343221 23333 1223
Q ss_pred HHHHHhhcC--CCccEEEecCCc
Q 025257 130 QQVLVDLTD--GGVDYSFECIGN 150 (255)
Q Consensus 130 ~~~i~~~~~--~~~d~v~d~~g~ 150 (255)
.+.+.+... +++|+++++.|.
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~ 112 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGI 112 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 333332221 379999999884
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0012 Score=56.21 Aligned_cols=92 Identities=28% Similarity=0.366 Sum_probs=69.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
--.|.+|.|.|.|.+|..+++.++..|+ +|+++++++.+...+.+.|.. + .++.+.+. ..|+|+-+
T Consensus 254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~-------~~l~ell~-----~aDiVi~~ 319 (479)
T 1v8b_A 254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-V-------VTLDEIVD-----KGDFFITC 319 (479)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-E-------CCHHHHTT-----TCSEEEEC
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-e-------cCHHHHHh-----cCCEEEEC
Confidence 3578999999999999999999999999 999999988776455566653 2 22333222 58999988
Q ss_pred CCcHHHH-HHHHHHhccCCceEEEEccC
Q 025257 148 IGNVSVM-RAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 148 ~g~~~~~-~~~~~~l~~~~G~~v~~g~~ 174 (255)
.+....+ ...+..++++ ..++.+|..
T Consensus 320 ~~t~~lI~~~~l~~MK~g-ailiNvgrg 346 (479)
T 1v8b_A 320 TGNVDVIKLEHLLKMKNN-AVVGNIGHF 346 (479)
T ss_dssp CSSSSSBCHHHHTTCCTT-CEEEECSST
T ss_pred CChhhhcCHHHHhhcCCC-cEEEEeCCC
Confidence 7665533 4677889996 888888764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00032 Score=54.39 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=66.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC----Cc-EEeCCCCCCchHHHHHHhhcCCCcc
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG----VT-EFVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g----~~-~vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
..+|.+||-.|+|. |..+..+++..+. ++++++.+++-.+.+++.. .. .++. .+..+.......+.||
T Consensus 58 ~~~G~rVLdiG~G~-G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~-----~~a~~~~~~~~~~~FD 130 (236)
T 3orh_A 58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK-----GLWEDVAPTLPDGHFD 130 (236)
T ss_dssp TTTCEEEEEECCTT-SHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE-----SCHHHHGGGSCTTCEE
T ss_pred ccCCCeEEEECCCc-cHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEe-----ehHHhhcccccccCCc
Confidence 46889999999874 7788888877677 9999999999888886643 21 1221 2333333344334799
Q ss_pred EEE-ecCCc----------HHHHHHHHHHhccCCceEEEEc
Q 025257 143 YSF-ECIGN----------VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 143 ~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.|+ |++.. +..++.+.++|++| |+++.+.
T Consensus 131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG-G~l~f~~ 170 (236)
T 3orh_A 131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN 170 (236)
T ss_dssp EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred eEEEeeeecccchhhhcchhhhhhhhhheeCCC-CEEEEEe
Confidence 985 65432 22367889999997 9998764
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0011 Score=52.84 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-----------HHHHHhcCCcEE---eCCCCCCchHHHHHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-----------FDRAKNFGVTEF---VNPKDHDKPIQQVLV 134 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-----------~~~~~~~g~~~v---i~~~~~~~~~~~~i~ 134 (255)
+++++||+|+ +++|.+.++.+...|+ +|+++++++++ .+.+++.+.... .|-.+ ++.+.+.+.
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~ 85 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD-GDAVAAAVA 85 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTS-HHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHH
Confidence 4689999997 8999999999999999 99999988763 222333443221 24333 122322233
Q ss_pred hhcC--CCccEEEecCCc
Q 025257 135 DLTD--GGVDYSFECIGN 150 (255)
Q Consensus 135 ~~~~--~~~d~v~d~~g~ 150 (255)
+... +++|+++++.|.
T Consensus 86 ~~~~~~g~id~lvnnAg~ 103 (285)
T 3sc4_A 86 KTVEQFGGIDICVNNASA 103 (285)
T ss_dssp HHHHHHSCCSEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2221 279999999884
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0017 Score=52.08 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=50.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------cchHHHH----HhcCCcE---EeCCCCCCchH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID------------PKKFDRA----KNFGVTE---FVNPKDHDKPI 129 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~------------~~~~~~~----~~~g~~~---vi~~~~~~~~~ 129 (255)
.++++||+|+ +++|.+.++.+...|+ +|++++++ +++.+.. ++.|... ..|-.+ +..+
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v 104 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD-FDAM 104 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHH
Confidence 4689999997 8999999999999999 99999876 3333332 3345332 134333 1223
Q ss_pred HHHHHhhcC--CCccEEEecCC
Q 025257 130 QQVLVDLTD--GGVDYSFECIG 149 (255)
Q Consensus 130 ~~~i~~~~~--~~~d~v~d~~g 149 (255)
.+.+.+... +++|+++++.|
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg 126 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAA 126 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 222332221 37999999887
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0011 Score=53.29 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=53.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc--EEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVT--EFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~--~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
++++++|+|+|++|.+++..+...|+.+|++..+++++.+.+ ++++.. .+++ + +.+.+.. ..+|+|++
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~-------~-~~~~~~~-~~aDivIn 210 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS-------L-AEAETRL-AEYDIIIN 210 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC-------H-HHHHHTG-GGCSEEEE
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee-------H-HHHHhhh-ccCCEEEE
Confidence 578999999999999999999999987899999998886655 555542 2221 1 1232222 16999999
Q ss_pred cCCcHH
Q 025257 147 CIGNVS 152 (255)
Q Consensus 147 ~~g~~~ 152 (255)
|++...
T Consensus 211 ~t~~~~ 216 (297)
T 2egg_A 211 TTSVGM 216 (297)
T ss_dssp CSCTTC
T ss_pred CCCCCC
Confidence 998654
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0015 Score=51.79 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhcC-CCccE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLTD-GGVDY 143 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~~-~~~d~ 143 (255)
+++++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++++... ..|-.+ ++.+.+.+.+... +++|+
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~id~ 106 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTS-EDSVLAAIEAANQLGRLRY 106 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHTTSSEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHhCCCCe
Confidence 4678999997 9999999999999999 999999998877666 4455322 124333 1233333333311 26899
Q ss_pred EEec
Q 025257 144 SFEC 147 (255)
Q Consensus 144 v~d~ 147 (255)
++.+
T Consensus 107 lv~~ 110 (281)
T 3ppi_A 107 AVVA 110 (281)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9987
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=52.56 Aligned_cols=78 Identities=13% Similarity=0.182 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh----cCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KN----FGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~----~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ +++|.+.++.+...|+ +|++++++.++.+.. .+ .|... ..|-.+ +....+.+.+...
T Consensus 26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 103 (277)
T 4fc7_A 26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA-PPAVMAAVDQALKEF 103 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5789999997 8999999999999999 999999988765444 22 24321 124333 1223222332221
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 104 g~id~lv~nAg 114 (277)
T 4fc7_A 104 GRIDILINCAA 114 (277)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 37999999988
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0014 Score=51.94 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-------HHH----HHhcCCcE---EeCCCCCCchHHHHHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-------FDR----AKNFGVTE---FVNPKDHDKPIQQVLV 134 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-------~~~----~~~~g~~~---vi~~~~~~~~~~~~i~ 134 (255)
+++++||+|+ +++|.+.++.+...|+ +|++++++.++ .+. +++.+... ..|-.+ +....+.+.
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~ 82 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIRE-EDQVRAAVA 82 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTC-HHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHH
Confidence 4689999997 8999999999999999 99999988653 222 22334321 234333 122222223
Q ss_pred hhcC--CCccEEEecCCc
Q 025257 135 DLTD--GGVDYSFECIGN 150 (255)
Q Consensus 135 ~~~~--~~~d~v~d~~g~ 150 (255)
+... +++|+++++.|.
T Consensus 83 ~~~~~~g~iD~lvnnAG~ 100 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASA 100 (274)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 2221 379999999884
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0013 Score=52.69 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h--------cCCcE--E-eCCCCCCchHHHHHHhh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N--------FGVTE--F-VNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~--------~g~~~--v-i~~~~~~~~~~~~i~~~ 136 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. + .+... + .|-.+ +..+.+.+.+.
T Consensus 17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~ 94 (303)
T 1yxm_A 17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVKST 94 (303)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC-HHHHHHHHHHH
Confidence 4679999997 9999999999999999 9999999887665442 1 13221 1 23333 12232223322
Q ss_pred cC--CCccEEEecCC
Q 025257 137 TD--GGVDYSFECIG 149 (255)
Q Consensus 137 ~~--~~~d~v~d~~g 149 (255)
.. +++|+++++.|
T Consensus 95 ~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 95 LDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 11 26999999988
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0013 Score=51.94 Aligned_cols=78 Identities=12% Similarity=0.034 Sum_probs=50.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHHH-hc----CCcE--E-eCCCCCC----chHHHHHHh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRAK-NF----GVTE--F-VNPKDHD----KPIQQVLVD 135 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~~-~~----g~~~--v-i~~~~~~----~~~~~~i~~ 135 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++ ++++.+.+. ++ +... + .|-.+ + ..+.+.+.+
T Consensus 10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 87 (276)
T 1mxh_A 10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL-SSSLLDCCEDIIDC 87 (276)
T ss_dssp -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-STTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCC-ccccHHHHHHHHHH
Confidence 4678999997 9999999999999999 9999998 776655442 22 4221 1 24433 2 222222222
Q ss_pred hcC--CCccEEEecCC
Q 025257 136 LTD--GGVDYSFECIG 149 (255)
Q Consensus 136 ~~~--~~~d~v~d~~g 149 (255)
... +++|+++++.|
T Consensus 88 ~~~~~g~id~lv~nAg 103 (276)
T 1mxh_A 88 SFRAFGRCDVLVNNAS 103 (276)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHhcCCCCEEEECCC
Confidence 211 36999999988
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0013 Score=51.82 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=49.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v~ 145 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++ ...+..+ .|-.+ ++.+.+.+.+... +++|+++
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g~iD~lv 79 (264)
T 2dtx_A 7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKYDHIECDVTN-PDQVKASIDHIFKEYGSISVLV 79 (264)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSSEEEECCTTC-HHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 3678999997 9999999999999999 99999987665 1112222 34333 1223333332221 3699999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 80 ~~Ag~ 84 (264)
T 2dtx_A 80 NNAGI 84 (264)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98873
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00083 Score=52.35 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
+++++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++.+... . .|-.+ ++.+.+.+.+... +
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence 4678999997 9999999999988999 999999988765543 2234321 1 23333 1223222322211 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 88 ~~d~vi~~Ag~ 98 (255)
T 1fmc_A 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0013 Score=51.45 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=50.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--HHHH-H---hcCCcE--E-eCCCCCCchHHHHHHhhcC--
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK--FDRA-K---NFGVTE--F-VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~--~~~~-~---~~g~~~--v-i~~~~~~~~~~~~i~~~~~-- 138 (255)
++++||+|+ |++|.+.++.+...|+ +|+++++++++ .+.+ + +.+... + .|-.+ ++.+.+.+.+...
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD-KANFDSAIDEAAEKL 79 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 578999997 9999999998888999 99999988776 4433 2 224321 1 24333 1223222322211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 80 g~iD~lv~nAg~ 91 (258)
T 3a28_C 80 GGFDVLVNNAGI 91 (258)
T ss_dssp TCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 369999998873
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0018 Score=51.88 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcEE--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g--~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ | ++|.+.++.+...|+ +|++++++++..+.++ +.+.... .|-.+ ++.+.+.+.+...
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 106 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSD-AESVDNMFKVLAEEW 106 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5689999997 5 999999999999999 9999999876554443 2342222 34333 1223322332221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 107 g~iD~lVnnAG~ 118 (296)
T 3k31_A 107 GSLDFVVHAVAF 118 (296)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999874
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0047 Score=49.88 Aligned_cols=88 Identities=17% Similarity=0.254 Sum_probs=62.7
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
.+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|.. +. .+..+.+. .+|+|+.|+..+
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~------~~~~~~~~-----~~DvVi~av~~~ 97 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGAR-LG------RTPAEVVS-----TCDITFACVSDP 97 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCE-EC------SCHHHHHH-----HCSEEEECCSSH
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCE-Ec------CCHHHHHh-----cCCEEEEeCCCH
Confidence 579999999999999988888998 999999999998888777753 21 22333333 479999999855
Q ss_pred HHHHHHHH-------HhccCCceEEEEcc
Q 025257 152 SVMRAALE-------CCHKGWGTSVIVGV 173 (255)
Q Consensus 152 ~~~~~~~~-------~l~~~~G~~v~~g~ 173 (255)
..++..+. .+.++ ..++.++.
T Consensus 98 ~~~~~v~~~~~~~~~~l~~~-~~vv~~s~ 125 (316)
T 2uyy_A 98 KAAKDLVLGPSGVLQGIRPG-KCYVDMST 125 (316)
T ss_dssp HHHHHHHHSTTCGGGGCCTT-CEEEECSC
T ss_pred HHHHHHHcCchhHhhcCCCC-CEEEECCC
Confidence 54665553 34453 55555543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00048 Score=53.18 Aligned_cols=103 Identities=24% Similarity=0.254 Sum_probs=67.0
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhc--
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT-- 137 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~-- 137 (255)
.+..++.+||-.|+| .|..+..+++.. +. +|++++.+++..+.+++ .|...-+.... .+..+.+.+..
T Consensus 68 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~--~d~~~~l~~l~~~ 143 (232)
T 3cbg_A 68 ISLTGAKQVLEIGVF-RGYSALAMALQLPPDG-QIIACDQDPNATAIAKKYWQKAGVAEKISLRL--GPALATLEQLTQG 143 (232)
T ss_dssp HHHHTCCEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE--SCHHHHHHHHHTS
T ss_pred HHhcCCCEEEEecCC-CCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHHHHhc
Confidence 344567899999987 588888898876 45 99999999988777754 34321111111 33333333332
Q ss_pred C--CCccEEE-ecCCc--HHHHHHHHHHhccCCceEEEEcc
Q 025257 138 D--GGVDYSF-ECIGN--VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 ~--~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+ +.||+|| |+... ...++.+.+.|+++ |.++.-..
T Consensus 144 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 183 (232)
T 3cbg_A 144 KPLPEFDLIFIDADKRNYPRYYEIGLNLLRRG-GLMVIDNV 183 (232)
T ss_dssp SSCCCEEEEEECSCGGGHHHHHHHHHHTEEEE-EEEEEECT
T ss_pred CCCCCcCEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence 1 4799998 43322 33478888999997 98876533
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0016 Score=50.86 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=50.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCe-EEEEcCCcc--hHHHHHhc--CCc--E-EeCCCCCC-chHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASR-VIGIDIDPK--KFDRAKNF--GVT--E-FVNPKDHD-KPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~-v~~~~~~~~--~~~~~~~~--g~~--~-vi~~~~~~-~~~~~~i~~~~~- 138 (255)
+++++||+|+ |++|.++++.+...|+ + |++++++++ ..+.+++. +.. . ..|-.+ + +.+.+.+.+...
T Consensus 4 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 81 (254)
T 1sby_A 4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTV-PVAESKKLLKKIFDQ 81 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS-CHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC-ChHHHHHHHHHHHHh
Confidence 4678999997 9999999999999999 6 888888763 33344332 221 1 124333 1 223322332211
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 82 ~g~id~lv~~Ag~ 94 (254)
T 1sby_A 82 LKTVDILINGAGI 94 (254)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCcc
Confidence 369999999883
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0014 Score=52.02 Aligned_cols=95 Identities=18% Similarity=0.136 Sum_probs=62.6
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
+|||+|+ |.+|..+++.+... |. +|+++++++++.+.+...+...+ .|..+ . +.+.+... ++|+|+++.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~d--~---~~l~~~~~-~~d~vi~~a 74 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYNQ--P---ESLQKAFA-GVSKLLFIS 74 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTTC--H---HHHHHHTT-TCSEEEECC
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccCC--H---HHHHHHHh-cCCEEEEcC
Confidence 5899998 99999999888877 88 99999998877766655555433 23332 2 23333332 589999988
Q ss_pred CcH-------HHHHHHHHHhccC-CceEEEEccC
Q 025257 149 GNV-------SVMRAALECCHKG-WGTSVIVGVA 174 (255)
Q Consensus 149 g~~-------~~~~~~~~~l~~~-~G~~v~~g~~ 174 (255)
+.. .....+++.+... -++++.++..
T Consensus 75 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~ 108 (287)
T 2jl1_A 75 GPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA 108 (287)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred CCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 741 1233445555443 1478887654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0016 Score=48.56 Aligned_cols=100 Identities=23% Similarity=0.265 Sum_probs=67.7
Q ss_pred hcCCCCCCEEEEEcCChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHh----cCC-c--EEeCCCCCCchHHHHHHh
Q 025257 65 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAKN----FGV-T--EFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 65 ~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~i~~ 135 (255)
...++++++||-.|+|. |..+..+++..+ . +|++++.+++..+.+++ .|. . .++.. +. ..+..
T Consensus 17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~-~~~~~ 88 (197)
T 3eey_A 17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENG-RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD-----GH-QNMDK 88 (197)
T ss_dssp HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECS-----CG-GGGGG
T ss_pred HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC-----CH-HHHhh
Confidence 34678899999999876 788888888864 4 99999999988777754 343 1 22221 11 11111
Q ss_pred hcCCCccEEEecCCc---------------HHHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDGGVDYSFECIGN---------------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
...+.||+|+-..+- ...+..+.+.|+++ |+++....
T Consensus 89 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 140 (197)
T 3eey_A 89 YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVIY 140 (197)
T ss_dssp TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEEc
Confidence 222479999855432 23488999999997 99887743
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0022 Score=50.97 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=50.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----Hhc-CCcE-E--eCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNF-GVTE-F--VNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~-g~~~-v--i~~~~~~~~~~~~i~~~~~- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++ ++++.+.+ ++. +... . .|-.+ ++.+.+.+.+...
T Consensus 24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK-PSEIADMMAMVADR 101 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC-HHHHHHHHHHHHHH
Confidence 4679999997 9999999999999999 9999998 44444433 222 3221 1 23332 1223222322211
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 102 ~g~iD~lv~nAg~ 114 (281)
T 3v2h_A 102 FGGADILVNNAGV 114 (281)
T ss_dssp TSSCSEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 379999999884
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0032 Score=48.60 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=65.7
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.++++.+||-.|+|. |..+..+++. |+ +|++++.+++..+.+++. .. ++. .+..+.+.....+.||+|+-
T Consensus 38 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~-~~-~~~-----~d~~~~~~~~~~~~fD~i~~ 107 (240)
T 3dli_A 38 YFKGCRRVLDIGCGR-GEFLELCKEE-GI-ESIGVDINEDMIKFCEGK-FN-VVK-----SDAIEYLKSLPDKYLDGVMI 107 (240)
T ss_dssp GTTTCSCEEEETCTT-THHHHHHHHH-TC-CEEEECSCHHHHHHHHTT-SE-EEC-----SCHHHHHHTSCTTCBSEEEE
T ss_pred hhcCCCeEEEEeCCC-CHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh-cc-eee-----ccHHHHhhhcCCCCeeEEEE
Confidence 357889999999864 5566666664 88 999999999998888776 22 222 33333333333348999985
Q ss_pred c-----CCc---HHHHHHHHHHhccCCceEEEEcc
Q 025257 147 C-----IGN---VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 147 ~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
. ... ...+..+.+.|+++ |+++....
T Consensus 108 ~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 141 (240)
T 3dli_A 108 SHFVEHLDPERLFELLSLCYSKMKYS-SYIVIESP 141 (240)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHBCTT-CCEEEEEE
T ss_pred CCchhhCCcHHHHHHHHHHHHHcCCC-cEEEEEeC
Confidence 3 222 34578889999997 98877543
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0011 Score=52.36 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=50.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|++++++. +..+.+ ++.+... + .|..+ +..+.+.+.+...
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 105 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAAS-ESDFIEAIQTIVQSD 105 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhc
Confidence 5689999997 9999999999999999 999999844 333333 3344322 2 23332 1223333332221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 106 g~id~li~nAg~ 117 (271)
T 4iin_A 106 GGLSYLVNNAGV 117 (271)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999884
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0017 Score=52.02 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----CCcE--E-eCCCCCCchHHHHHHhhc--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----GVTE--F-VNPKDHDKPIQQVLVDLT--D 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g~~~--v-i~~~~~~~~~~~~i~~~~--~ 138 (255)
.+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++ +... + .|-.+ ++.+.+.+.+.. .
T Consensus 25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 102 (302)
T 1w6u_A 25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD-PDMVQNTVSELIKVA 102 (302)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHHHHHHc
Confidence 4679999997 9999999999999999 9999999887665442 22 4321 1 24333 122333333221 1
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+.+|+++++.|
T Consensus 103 g~id~li~~Ag 113 (302)
T 1w6u_A 103 GHPNIVINNAA 113 (302)
T ss_dssp CSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37899999988
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00021 Score=55.82 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=69.0
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~ 134 (255)
+.....++++.+||-.|+|. |..+..+++..|. +|++++.+++..+.+++ .|.. .++...- .++
T Consensus 28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~--~~~----- 98 (256)
T 1nkv_A 28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA--AGY----- 98 (256)
T ss_dssp HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC--TTC-----
T ss_pred HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh--HhC-----
Confidence 45667789999999999976 8888899988888 99999999987777743 3421 1111110 111
Q ss_pred hhcCCCccEEEecC------CcHHHHHHHHHHhccCCceEEEEc
Q 025257 135 DLTDGGVDYSFECI------GNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 135 ~~~~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.. .+.||+|+-.. .....+..+.+.|+++ |+++...
T Consensus 99 ~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~ 140 (256)
T 1nkv_A 99 VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE 140 (256)
T ss_dssp CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC-eEEEEec
Confidence 01 23799998421 2344588888999997 9888764
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0032 Score=50.88 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
-.|.+|.|.|.|.+|...++.++..|. +|++.++++++. .+++.|+.. .++.+.+. ..|+|+.++
T Consensus 140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~--------~~l~ell~-----~aDvVvl~~ 204 (313)
T 2ekl_A 140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKA--------VSLEELLK-----NSDVISLHV 204 (313)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEE--------CCHHHHHH-----HCSEEEECC
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCcee--------cCHHHHHh-----hCCEEEEec
Confidence 367899999999999999999999999 999999988764 456777652 12323333 379998877
Q ss_pred CcHH----HH-HHHHHHhccCCceEEEEcc
Q 025257 149 GNVS----VM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~~----~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
.... .+ +..+..++++ +.++.++.
T Consensus 205 P~~~~t~~li~~~~l~~mk~g-a~lIn~ar 233 (313)
T 2ekl_A 205 TVSKDAKPIIDYPQFELMKDN-VIIVNTSR 233 (313)
T ss_dssp CCCTTSCCSBCHHHHHHSCTT-EEEEESSC
T ss_pred cCChHHHHhhCHHHHhcCCCC-CEEEECCC
Confidence 6322 12 4667888996 88887755
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00038 Score=56.45 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=68.9
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~ 136 (255)
+.....++++++||..|+|. |..+..+++..+. .+|++++.+++..+.+++ .|...+ .... .+..+...
T Consensus 67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v-~~~~--~d~~~~~~-- 140 (317)
T 1dl5_A 67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENV-IFVC--GDGYYGVP-- 140 (317)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEE--SCGGGCCG--
T ss_pred HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCe-EEEE--CChhhccc--
Confidence 45667889999999999876 7788888887541 269999999988887754 343321 1110 11111011
Q ss_pred cCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEc
Q 025257 137 TDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 137 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
..+.||+|+....-....+.+.+.|+++ |+++..-
T Consensus 141 ~~~~fD~Iv~~~~~~~~~~~~~~~Lkpg-G~lvi~~ 175 (317)
T 1dl5_A 141 EFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVPI 175 (317)
T ss_dssp GGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEEB
T ss_pred cCCCeEEEEEcCCHHHHHHHHHHhcCCC-cEEEEEE
Confidence 1237999997655444346778899997 9887763
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0041 Score=50.21 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=51.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC---cchHHHHH-h----cCCc-EEeCCCCCCchHHHHHHhhcCCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---PKKFDRAK-N----FGVT-EFVNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~---~~~~~~~~-~----~g~~-~vi~~~~~~~~~~~~i~~~~~~~ 140 (255)
.++++||+|+|++|.+++..+...|+.+|+++.|+ .++.+.+. + .+.. .+++..+ .+++.+.+. .
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~-~~~l~~~l~-----~ 226 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED-HEQLRKEIA-----E 226 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHHH-----T
T ss_pred cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch-HHHHHhhhc-----C
Confidence 67899999999999999999999998789999998 56655442 2 2322 2333332 012333332 5
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+|++|+..
T Consensus 227 aDiIINaTp~ 236 (315)
T 3tnl_A 227 SVIFTNATGV 236 (315)
T ss_dssp CSEEEECSST
T ss_pred CCEEEECccC
Confidence 8999998864
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0017 Score=51.53 Aligned_cols=80 Identities=24% Similarity=0.401 Sum_probs=51.8
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-------------CcchHHHH----HhcCCcE---EeCCCCCCc
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-------------DPKKFDRA----KNFGVTE---FVNPKDHDK 127 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-------------~~~~~~~~----~~~g~~~---vi~~~~~~~ 127 (255)
-.++++||+|+ +++|.+.++.+...|+ +|+++++ ++++.+.+ ++.|... ..|-.+ ++
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~ 90 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD-DA 90 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC-HH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HH
Confidence 35789999997 8999999999999999 9999987 44444443 2334322 124333 12
Q ss_pred hHHHHHHhhcC--CCccEEEecCCc
Q 025257 128 PIQQVLVDLTD--GGVDYSFECIGN 150 (255)
Q Consensus 128 ~~~~~i~~~~~--~~~d~v~d~~g~ 150 (255)
.+.+.+.+... +++|+++++.|.
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 23322332211 379999999884
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0016 Score=51.05 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---cCCcE--E-eCCCCCCchHHHHHHhh---cC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N---FGVTE--F-VNPKDHDKPIQQVLVDL---TD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~---~g~~~--v-i~~~~~~~~~~~~i~~~---~~ 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. + .+... + .|-.+ +..+.+.+.+. ..
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ-ESEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence 4678999997 9999999999999999 9999999887665442 2 24321 1 24333 12233333332 13
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+.+|+++++.|
T Consensus 82 g~id~lvnnAg 92 (260)
T 2qq5_A 82 GRLDVLVNNAY 92 (260)
T ss_dssp TCCCEEEECCC
T ss_pred CCceEEEECCc
Confidence 47999999984
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0021 Score=51.01 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=51.6
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC-
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~- 138 (255)
..++++||+|+ |++|.+.++.+...|+ +|+++++ ++++.+.+ ++.|... ..|-.+ ++...+.+.+...
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD-LSSHQATVDAVVAE 104 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS-GGGHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHH
Confidence 35689999997 9999999999999999 9999985 55544433 2334322 124333 2333333333221
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 105 ~g~iD~lvnnAg~ 117 (280)
T 4da9_A 105 FGRIDCLVNNAGI 117 (280)
T ss_dssp HSCCCEEEEECC-
T ss_pred cCCCCEEEECCCc
Confidence 379999999885
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.002 Score=48.79 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=67.5
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE--EeCCCCCCchHHHHHHhhcCCCccE
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~--vi~~~~~~~~~~~~i~~~~~~~~d~ 143 (255)
..+.++.+||-.|+|. |..+..+++. |. +|++++.+++..+.+++.+... ++...- .++ ...+.||+
T Consensus 42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~--~~~------~~~~~~D~ 110 (218)
T 3ou2_A 42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDL--FDW------TPDRQWDA 110 (218)
T ss_dssp TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECCT--TSC------CCSSCEEE
T ss_pred hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEeccc--ccC------CCCCceeE
Confidence 3477888999999875 7777777777 88 9999999999999998766322 121110 111 12237999
Q ss_pred EEecCC-----c---HHHHHHHHHHhccCCceEEEEccC
Q 025257 144 SFECIG-----N---VSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 144 v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
|+.... . ...++.+.+.|+++ |+++.....
T Consensus 111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~ 148 (218)
T 3ou2_A 111 VFFAHWLAHVPDDRFEAFWESVRSAVAPG-GVVEFVDVT 148 (218)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence 985432 2 34478888999997 998887653
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00098 Score=52.20 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=50.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCcE-E--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~-v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++ ++++.+.+ ++.+... + .|-.+ +..+.+.+.+...
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4678999997 9999999999888999 9999998 66555443 2234321 1 23333 1223332332211
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 84 g~id~li~~Ag 94 (261)
T 1gee_A 84 GKLDVMINNAG 94 (261)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 26999999887
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=51.80 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=52.3
Q ss_pred CCCEEEEEcC-C-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcC-Cc--E-EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFG-VT--E-FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g-~~--~-vi~~~~~~~~~~~~i~~~~~- 138 (255)
+++++||+|+ | ++|.+.++.+...|+ +|+++++++++.+.+. +.+ .. . ..|-.+ ++.+.+.+.+...
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS-TEAVDALITQTVEK 98 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC-HHHHHHHHHHHHHH
Confidence 5689999997 7 799999999999999 9999999887765542 222 11 1 124333 1223222332211
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 99 ~g~id~li~~Ag~ 111 (266)
T 3o38_A 99 AGRLDVLVNNAGL 111 (266)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCcEEEECCCc
Confidence 379999999883
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0016 Score=49.91 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=67.7
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcC------CCeEEEEcCCcchHHHHHhc----C-----Cc--EEeCCCCCCchH
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAG------ASRVIGIDIDPKKFDRAKNF----G-----VT--EFVNPKDHDKPI 129 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g------~~~v~~~~~~~~~~~~~~~~----g-----~~--~vi~~~~~~~~~ 129 (255)
.++++++||..|+|. |..+..+++..+ . +|++++.+++..+.+++. + .. .++.... ...+
T Consensus 77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~ 153 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNS-YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI-YQVN 153 (227)
T ss_dssp TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTC-EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG-GGCC
T ss_pred hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCC-EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh-Hhcc
Confidence 588999999999976 888888888876 5 999999999887777542 3 11 1221111 0111
Q ss_pred HHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 130 QQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 130 ~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+... ..+.||+|+........++.+.+.|+++ |+++..-.
T Consensus 154 ~~~~~--~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~ 194 (227)
T 2pbf_A 154 EEEKK--ELGLFDAIHVGASASELPEILVDLLAEN-GKLIIPIE 194 (227)
T ss_dssp HHHHH--HHCCEEEEEECSBBSSCCHHHHHHEEEE-EEEEEEEE
T ss_pred cccCc--cCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEc
Confidence 00001 1237999997766555568889999997 98876643
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0026 Score=51.29 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=68.6
Q ss_pred hhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHHh
Q 025257 64 NTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 64 ~~~~-~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~~ 135 (255)
.... ++++++||-.|+|. |..+..+++..|+ +|++++.+++..+.+++ .|.. .++...- .++ .
T Consensus 110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~-----~ 180 (312)
T 3vc1_A 110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM--LDT-----P 180 (312)
T ss_dssp TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSC-----C
T ss_pred HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh--hcC-----C
Confidence 4444 78999999999875 7788888887788 99999999988877754 3422 1221110 111 0
Q ss_pred hcCCCccEEEec-----CCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDGGVDYSFEC-----IGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~~~d~v~d~-----~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
...+.||+|+.. .+....++.+.+.|+++ |+++....
T Consensus 181 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 222 (312)
T 3vc1_A 181 FDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG-GRYVTITG 222 (312)
T ss_dssp CCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC-cEEEEEEc
Confidence 112379999753 23345588999999997 99988764
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0031 Score=48.78 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=49.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
.+.+|||+|+ |.+|..+++.+... |. +|+++++++++.+.+ ..+...+ .|..+ . +.+.+... ++|+|+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~D~~d--~---~~~~~~~~-~~d~vi 74 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADVFIGDITD--A---DSINPAFQ-GIDALV 74 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTEEECCTTS--H---HHHHHHHT-TCSEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeEEEecCCC--H---HHHHHHHc-CCCEEE
Confidence 4578999997 99999999988888 78 999999987665443 1223322 23332 2 22333222 589999
Q ss_pred ecCC
Q 025257 146 ECIG 149 (255)
Q Consensus 146 d~~g 149 (255)
++.+
T Consensus 75 ~~a~ 78 (253)
T 1xq6_A 75 ILTS 78 (253)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9887
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0018 Score=52.54 Aligned_cols=79 Identities=28% Similarity=0.315 Sum_probs=50.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC----------cchHHHH----HhcCCcEEe---CCCCCCchHHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID----------PKKFDRA----KNFGVTEFV---NPKDHDKPIQQ 131 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~----------~~~~~~~----~~~g~~~vi---~~~~~~~~~~~ 131 (255)
.++++||+|+ +++|.+.++.+...|+ +|++++++ .++.+.+ ++.|....+ |-.+ +..+.+
T Consensus 26 ~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~ 103 (322)
T 3qlj_A 26 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVAD-WDQAAG 103 (322)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTS-HHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHH
Confidence 5689999997 8999999999999999 99999876 3443333 334433222 3222 122222
Q ss_pred HHHhhcC--CCccEEEecCCc
Q 025257 132 VLVDLTD--GGVDYSFECIGN 150 (255)
Q Consensus 132 ~i~~~~~--~~~d~v~d~~g~ 150 (255)
.+.+... +++|+++++.|.
T Consensus 104 ~~~~~~~~~g~iD~lv~nAg~ 124 (322)
T 3qlj_A 104 LIQTAVETFGGLDVLVNNAGI 124 (322)
T ss_dssp HHHHHHHHHSCCCEEECCCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 2222211 379999999884
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0026 Score=50.61 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=30.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
.++++||+|+ +++|.+.++.+...|+ +|++++++
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~ 44 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC 44 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence 5689999997 8999999999999999 99999876
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0017 Score=53.34 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=65.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|.|.|.|.+|...++.++..|. +|++.++++...+.+++.|+..+ .++.+.+. ..|+|+-++.
T Consensus 163 ~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvV~l~~P 229 (351)
T 3jtm_A 163 EGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV-------EDLNEMLP-----KCDVIVINMP 229 (351)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC-------SCHHHHGG-----GCSEEEECSC
T ss_pred cCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc-------CCHHHHHh-----cCCEEEECCC
Confidence 57899999999999999999999999 99999988777777777776432 23333333 4788887665
Q ss_pred cH-H---H-HHHHHHHhccCCceEEEEcc
Q 025257 150 NV-S---V-MRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~-~---~-~~~~~~~l~~~~G~~v~~g~ 173 (255)
.. . . -...+..|+++ ..++.++-
T Consensus 230 lt~~t~~li~~~~l~~mk~g-ailIN~aR 257 (351)
T 3jtm_A 230 LTEKTRGMFNKELIGKLKKG-VLIVNNAR 257 (351)
T ss_dssp CCTTTTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred CCHHHHHhhcHHHHhcCCCC-CEEEECcC
Confidence 21 1 1 25667778885 77777654
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0014 Score=51.35 Aligned_cols=77 Identities=22% Similarity=0.334 Sum_probs=48.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE---EeCCCCCCchHHHHHHhhc-CCCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE---FVNPKDHDKPIQQVLVDLT-DGGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~---vi~~~~~~~~~~~~i~~~~-~~~~d~v 144 (255)
+++++||+|+ +++|.+.++.+...|+ +|++++++.++ ..++++... ..|-.+ ++...+.+.... .+++|++
T Consensus 8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~g~id~l 83 (257)
T 3tl3_A 8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGED--VVADLGDRARFAAADVTD-EAAVASALDLAETMGTLRIV 83 (257)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHH--HHHHTCTTEEEEECCTTC-HHHHHHHHHHHHHHSCEEEE
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHH--HHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhCCCCEE
Confidence 4678999997 8999999999999999 99999985443 334455322 124333 122222222111 1379999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+++.|.
T Consensus 84 v~nAg~ 89 (257)
T 3tl3_A 84 VNCAGT 89 (257)
T ss_dssp EECGGG
T ss_pred EECCCC
Confidence 999883
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0028 Score=50.19 Aligned_cols=79 Identities=24% Similarity=0.330 Sum_probs=50.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-------------CcchHHHH----HhcCCcE---EeCCCCCCch
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-------------DPKKFDRA----KNFGVTE---FVNPKDHDKP 128 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-------------~~~~~~~~----~~~g~~~---vi~~~~~~~~ 128 (255)
.++++||+|+ +++|.+.++.+...|+ +|+++++ ++++.+.+ ...+... ..|-.+ ++.
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~ 87 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRD-FDR 87 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHH
Confidence 5689999997 8999999999999999 9999987 34443333 2234322 124333 122
Q ss_pred HHHHHHhhcC--CCccEEEecCCc
Q 025257 129 IQQVLVDLTD--GGVDYSFECIGN 150 (255)
Q Consensus 129 ~~~~i~~~~~--~~~d~v~d~~g~ 150 (255)
+.+.+.+... +++|+++++.|.
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 3333333221 369999998874
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0014 Score=51.73 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=50.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++ ++++.+.+ ++.+... ..|-.+ ++.+.+.+.+...
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~~~ 104 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQ-ESEVEALFAAVIERW 104 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4689999997 9999999999999999 9999887 44444433 3334322 124333 1222222322211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 105 g~id~lv~nAg~ 116 (269)
T 4dmm_A 105 GRLDVLVNNAGI 116 (269)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998874
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0042 Score=50.68 Aligned_cols=87 Identities=20% Similarity=0.354 Sum_probs=62.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+.+|.|.|.|.+|...++.++..|. +|++.++++++ +.+++.|... .++.+.+. ..|+|+.++.
T Consensus 149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~--------~~l~~~l~-----~aDvVil~vp 213 (334)
T 2dbq_A 149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAEF--------KPLEDLLR-----ESDFVVLAVP 213 (334)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCEE--------CCHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCccc--------CCHHHHHh-----hCCEEEECCC
Confidence 56799999999999999999999999 99999998877 6666666531 12333333 3788887776
Q ss_pred cHH----HH-HHHHHHhccCCceEEEEc
Q 025257 150 NVS----VM-RAALECCHKGWGTSVIVG 172 (255)
Q Consensus 150 ~~~----~~-~~~~~~l~~~~G~~v~~g 172 (255)
... .+ ...+..++++ ..++.++
T Consensus 214 ~~~~t~~~i~~~~~~~mk~~-ailIn~s 240 (334)
T 2dbq_A 214 LTRETYHLINEERLKLMKKT-AILINIA 240 (334)
T ss_dssp CCTTTTTCBCHHHHHHSCTT-CEEEECS
T ss_pred CChHHHHhhCHHHHhcCCCC-cEEEECC
Confidence 432 12 3556777875 6776665
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0082 Score=48.31 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=63.9
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+.. . .+..+.+. ..|+|+-|+..
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~------~~~~e~~~-----~aDvVi~~vp~ 75 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAHL-C------ESVKAALS-----ASPATIFVLLD 75 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCEE-C------SSHHHHHH-----HSSEEEECCSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee-c------CCHHHHHh-----cCCEEEEEeCC
Confidence 4579999999999999999999999 9999999999998887777632 1 33444443 37899988887
Q ss_pred HHHHHHHHH-----HhccCCceEEEEcc
Q 025257 151 VSVMRAALE-----CCHKGWGTSVIVGV 173 (255)
Q Consensus 151 ~~~~~~~~~-----~l~~~~G~~v~~g~ 173 (255)
+..++..+. .+.++ ..++.++.
T Consensus 76 ~~~~~~v~~~~~l~~~~~g-~ivid~st 102 (306)
T 3l6d_A 76 NHATHEVLGMPGVARALAH-RTIVDYTT 102 (306)
T ss_dssp HHHHHHHHTSTTHHHHTTT-CEEEECCC
T ss_pred HHHHHHHhcccchhhccCC-CEEEECCC
Confidence 654554442 34453 55555544
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0016 Score=50.23 Aligned_cols=96 Identities=24% Similarity=0.264 Sum_probs=60.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe--CCCCCCchH---HHHHHhhcC-CCccE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV--NPKDHDKPI---QQVLVDLTD-GGVDY 143 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~---~~~i~~~~~-~~~d~ 143 (255)
++++||+|+ |++|.+.++.+...|+ +|+++++++++.+ +....+ |-.+ ++.+ .+.+.+..+ +++|+
T Consensus 3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~g~id~ 75 (236)
T 1ooe_A 3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNW-TEQEQSILEQTASSLQGSQVDG 75 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCH-HHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCccccc-----cccEEEeCCCCC-HHHHHHHHHHHHHHhCCCCCCE
Confidence 568999997 9999999999999999 9999998876532 101111 2111 0112 222323232 47999
Q ss_pred EEecCCc--------HH------------------HHHHHHHHhccCCceEEEEccC
Q 025257 144 SFECIGN--------VS------------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 144 v~d~~g~--------~~------------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++++.|. .. ..+.+.+.++.+ |+++.++..
T Consensus 76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~ 131 (236)
T 1ooe_A 76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAA 131 (236)
T ss_dssp EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC-CEEEEECch
Confidence 9999882 11 123344555565 899998764
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0014 Score=51.84 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=50.0
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE-EeCCCCCCchHHHHHHhhcC--CCccE
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTD--GGVDY 143 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~i~~~~~--~~~d~ 143 (255)
..++++|||+|+ |++|.+.++.+...|+ +|+++++++++... .... ..|-.+ ++...+.+.+... +++|+
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~----~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~ 84 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDVN----VSDHFKIDVTN-EEEVKEAVEKTTKKYGRIDI 84 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CTT----SSEEEECCTTC-HHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhccC----ceeEEEecCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 456789999997 8999999999999999 99999987654411 1222 234333 1223332332221 37999
Q ss_pred EEecCCc
Q 025257 144 SFECIGN 150 (255)
Q Consensus 144 v~d~~g~ 150 (255)
++++.|.
T Consensus 85 lv~nAg~ 91 (269)
T 3vtz_A 85 LVNNAGI 91 (269)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9999884
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.006 Score=51.18 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=63.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCC--CeEEEEcCCcchHHHHH-hcC------CcE-EeCCCCCCchHHHHHHhhcCCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGA--SRVIGIDIDPKKFDRAK-NFG------VTE-FVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~--~~v~~~~~~~~~~~~~~-~~g------~~~-vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
.+|+|+|+|.+|..+++.+...|. .+|++.++++++.+.+. +++ ... .+|..+ ..++.+.+.+. ++
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d-~~~l~~~l~~~---~~ 77 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS-IEELVALINEV---KP 77 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC-HHHHHHHHHHH---CC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC-HHHHHHHHHhh---CC
Confidence 379999999999999998888873 38999999988877653 222 222 233332 12333334332 58
Q ss_pred cEEEecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 142 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
|+|++|++..........++..+ -.++.+..
T Consensus 78 DvVin~ag~~~~~~v~~a~l~~g-~~vvD~a~ 108 (405)
T 4ina_A 78 QIVLNIALPYQDLTIMEACLRTG-VPYLDTAN 108 (405)
T ss_dssp SEEEECSCGGGHHHHHHHHHHHT-CCEEESSC
T ss_pred CEEEECCCcccChHHHHHHHHhC-CCEEEecC
Confidence 99999998655445555667774 66665533
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0026 Score=50.24 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=59.0
Q ss_pred hhcCC-CCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCc
Q 025257 64 NTAKV-EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 64 ~~~~~-~~~~~vlI~G~g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
+...+ -.|++++|.|.| .+|..+++++...|+ +|++..+. . .++.+.++ .+
T Consensus 153 ~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t--~~L~~~~~-----~A 205 (285)
T 3l07_A 153 REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRF-------------------T--TDLKSHTT-----KA 205 (285)
T ss_dssp HHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C--SSHHHHHT-----TC
T ss_pred HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC-------------------c--hhHHHhcc-----cC
Confidence 44443 488999999985 589999999999999 88777532 1 34444444 48
Q ss_pred cEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 142 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
|+|+.++|.+..+ .-.+++++ ..++.+|..
T Consensus 206 DIVI~Avg~p~~I--~~~~vk~G-avVIDvgi~ 235 (285)
T 3l07_A 206 DILIVAVGKPNFI--TADMVKEG-AVVIDVGIN 235 (285)
T ss_dssp SEEEECCCCTTCB--CGGGSCTT-CEEEECCCE
T ss_pred CEEEECCCCCCCC--CHHHcCCC-cEEEEeccc
Confidence 9999999987622 23567886 788888764
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0016 Score=51.85 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhc--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~--~~ 139 (255)
+++++||+|+ |++|...++.+...|+ +|+++++++++.+.+ ++.+... ..|-.+ ++.+.+.+.+.. .+
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~~ 120 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTEHK 120 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC-HHHHHHHHHHHHHhcC
Confidence 3578999997 9999999998888999 999988887765543 2234322 124333 122333333221 13
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 121 ~id~li~~Ag~ 131 (285)
T 2c07_A 121 NVDILVNNAGI 131 (285)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0021 Score=49.76 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=48.1
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe--CCCCCCchHH---HHHHhhcC-CCc
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV--NPKDHDKPIQ---QVLVDLTD-GGV 141 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~---~~i~~~~~-~~~ 141 (255)
.+++++||+|+ |++|.+.++.+...|+ +|+++++++++.+ +....+ |-.+ ++.+. +.+.+..+ +++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~g~i 77 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSF-TEQADQVTAEVGKLLGDQKV 77 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCH-HHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc-----CCcEEEEcCCCC-HHHHHHHHHHHHHHhCCCCC
Confidence 35678999997 9999999999999999 9999998876532 111111 2221 11222 22222232 479
Q ss_pred cEEEecCC
Q 025257 142 DYSFECIG 149 (255)
Q Consensus 142 d~v~d~~g 149 (255)
|+++++.|
T Consensus 78 D~lv~~Ag 85 (241)
T 1dhr_A 78 DAILCVAG 85 (241)
T ss_dssp EEEEECCC
T ss_pred CEEEEccc
Confidence 99999987
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0082 Score=48.01 Aligned_cols=87 Identities=20% Similarity=0.315 Sum_probs=61.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
.+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|.. +. .++.+.+. .+|+|+.|+..+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~------~~~~~~~~-----~~D~vi~~vp~~ 71 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGAQ-AC------ENNQKVAA-----ASDIIFTSLPNA 71 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTCE-EC------SSHHHHHH-----HCSEEEECCSSH
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe-ec------CCHHHHHh-----CCCEEEEECCCH
Confidence 479999999999999988888898 999999999888888776653 21 22333333 379999998765
Q ss_pred HHHHHHH-------HHhccCCceEEEEc
Q 025257 152 SVMRAAL-------ECCHKGWGTSVIVG 172 (255)
Q Consensus 152 ~~~~~~~-------~~l~~~~G~~v~~g 172 (255)
..++..+ ..++++ ..++.+.
T Consensus 72 ~~~~~v~~~~~~l~~~l~~~-~~vv~~~ 98 (301)
T 3cky_A 72 GIVETVMNGPGGVLSACKAG-TVIVDMS 98 (301)
T ss_dssp HHHHHHHHSTTCHHHHSCTT-CEEEECC
T ss_pred HHHHHHHcCcchHhhcCCCC-CEEEECC
Confidence 5455444 345564 5555553
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.001 Score=51.21 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=67.0
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC--cE--EeCCCCCCchHHHHHHhhcCC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV--TE--FVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~--~~--vi~~~~~~~~~~~~i~~~~~~ 139 (255)
....++++++||-.|+|. |..+..+++..|..+|++++.+++..+.+++.-. +. .+.... .+.. ..... .+
T Consensus 68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~--~~~~-~~~~~-~~ 142 (230)
T 1fbn_A 68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA--NKPQ-EYANI-VE 142 (230)
T ss_dssp CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT--TCGG-GGTTT-SC
T ss_pred cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC--CCcc-ccccc-Cc
Confidence 445678899999999986 8888889988874499999999988777754211 11 111111 1100 00011 13
Q ss_pred CccEEEecCCcH----HHHHHHHHHhccCCceEEEE
Q 025257 140 GVDYSFECIGNV----SVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 140 ~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~ 171 (255)
.+|+|+.....+ ..++.+.+.|+++ |+++..
T Consensus 143 ~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 177 (230)
T 1fbn_A 143 KVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA 177 (230)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cEEEEEEecCChhHHHHHHHHHHHhCCCC-cEEEEE
Confidence 799999655543 3378888899997 998876
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.004 Score=53.16 Aligned_cols=94 Identities=17% Similarity=0.101 Sum_probs=60.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh-cCCcE-EeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKN-FGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~-~g~~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
++.+|+|+|+|.+|.+++..+... |. +|++.++++++.+.+.+ .+... .+|..+ ...+.+.+. ++|+|++
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~d-~~~l~~~l~-----~~DvVIn 94 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVTD-DSALDKVLA-----DNDVVIS 94 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTTC-HHHHHHHHH-----TSSEEEE
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecCC-HHHHHHHHc-----CCCEEEE
Confidence 356899999999999999888877 67 89999999888776643 34432 233332 012333332 5899999
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEE
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
|++..........++..+ -.++..
T Consensus 95 ~tp~~~~~~v~~a~l~~g-~~vvd~ 118 (467)
T 2axq_A 95 LIPYTFHPNVVKSAIRTK-TDVVTS 118 (467)
T ss_dssp CSCGGGHHHHHHHHHHHT-CEEEEC
T ss_pred CCchhhhHHHHHHHHhcC-CEEEEe
Confidence 998654233334455553 444443
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0013 Score=51.52 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=49.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE-EeCCCCCCchHHHHHHhhc--CCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLT--DGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~i~~~~--~~~~d~v~ 145 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+. +.. ..|-.+ ++.+.+.+.+.. .+.+|+++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~~Dl~d-~~~v~~~~~~~~~~~g~iD~lv 92 (253)
T 2nm0_A 20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG-----FLAVKCDITD-TEQVEQAYKEIEETHGPVEVLI 92 (253)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT-----SEEEECCTTS-HHHHHHHHHHHHHHTCSCSEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc-----ceEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4678999997 9999999999999999 99999987665432 211 124333 122322233221 13699999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 93 ~nAg~ 97 (253)
T 2nm0_A 93 ANAGV 97 (253)
T ss_dssp EECSC
T ss_pred ECCCC
Confidence 98874
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0027 Score=49.78 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=49.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCc--EE-eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRA----KNFGVT--EF-VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~--~v-i~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ +++|.+.++.+...|+ +|+++ .+++++.+.. ++.+.. .+ .|-.+ ++...+.+.+...
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN-AAEVEAAISAAADKF 84 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence 4689999997 8999999999999999 99988 4454443333 334432 11 24333 1223222332221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 85 g~id~lv~nAg~ 96 (259)
T 3edm_A 85 GEIHGLVHVAGG 96 (259)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999998873
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0035 Score=49.57 Aligned_cols=72 Identities=13% Similarity=0.040 Sum_probs=52.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC--cEEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV--TEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~--~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.+++++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+ ++++. -.++... ++ .. ..+|+|++
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~----~l----~~---~~~DivIn 187 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYE----AL----EG---QSFDIVVN 187 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSG----GG----TT---CCCSEEEE
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHH----Hh----cc---cCCCEEEE
Confidence 578999999999999999999999976999999998887765 44442 1233222 11 11 36999999
Q ss_pred cCCcHH
Q 025257 147 CIGNVS 152 (255)
Q Consensus 147 ~~g~~~ 152 (255)
|+....
T Consensus 188 aTp~gm 193 (272)
T 3pwz_A 188 ATSASL 193 (272)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 987543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0021 Score=47.38 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=68.3
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-cEEeCCCCCCchHHHHHHhh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGV-TEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~i~~~ 136 (255)
+.....+.++++||..|+|. |..+..+++.. . +|++++.+++..+.+++ .+. +.+ .... .+..+.+...
T Consensus 25 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~--~d~~~~~~~~ 98 (192)
T 1l3i_A 25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNV-TLME--GDAPEALCKI 98 (192)
T ss_dssp HHHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEE--SCHHHHHTTS
T ss_pred HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcce-EEEe--cCHHHhcccC
Confidence 44556788999999999876 77777777765 5 99999999988877754 343 211 1111 3333323221
Q ss_pred cCCCccEEEecCC---cHHHHHHHHHHhccCCceEEEEc
Q 025257 137 TDGGVDYSFECIG---NVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 137 ~~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+.+|+|+.... -...++.+.+.++++ |+++...
T Consensus 99 --~~~D~v~~~~~~~~~~~~l~~~~~~l~~g-G~l~~~~ 134 (192)
T 1l3i_A 99 --PDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA 134 (192)
T ss_dssp --CCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred --CCCCEEEECCchHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence 27999996543 134478888899997 9887764
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0035 Score=50.57 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=50.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC---cchHHHH-Hhc----CCc-EEeCCCCCCch-HHHHHHhhcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---PKKFDRA-KNF----GVT-EFVNPKDHDKP-IQQVLVDLTDG 139 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~---~~~~~~~-~~~----g~~-~vi~~~~~~~~-~~~~i~~~~~~ 139 (255)
.++++||+|+|++|.+++..+...|+++|+++.|+ .++.+.+ +++ +.. .+++..+ .+ +.+.+.
T Consensus 147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~--l~~~~~~l~----- 219 (312)
T 3t4e_A 147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLAD--QHAFTEALA----- 219 (312)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTC--HHHHHHHHH-----
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHh--hhhhHhhcc-----
Confidence 57899999999999999999999998789999999 5555544 222 222 2333322 11 122232
Q ss_pred CccEEEecCCcH
Q 025257 140 GVDYSFECIGNV 151 (255)
Q Consensus 140 ~~d~v~d~~g~~ 151 (255)
.+|+|++|++..
T Consensus 220 ~~DiIINaTp~G 231 (312)
T 3t4e_A 220 SADILTNGTKVG 231 (312)
T ss_dssp HCSEEEECSSTT
T ss_pred CceEEEECCcCC
Confidence 489999988643
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0023 Score=49.61 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=49.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|...++.+...|+ +|+++ .+++++.+.+ ++.+... ..|-.+ ++.+.+.+.+...
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 81 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKN-PEDVENMVKTAMDAF 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTS-HHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHhc
Confidence 4678999997 9999999999999999 99998 5665554433 2334321 124333 1223332332211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 82 ~~~d~vi~~Ag~ 93 (247)
T 2hq1_A 82 GRIDILVNNAGI 93 (247)
T ss_dssp SCCCEEEECC--
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0023 Score=51.78 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=50.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------cchHHHH----HhcCCcEE---eCCCCCCchH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID------------PKKFDRA----KNFGVTEF---VNPKDHDKPI 129 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~------------~~~~~~~----~~~g~~~v---i~~~~~~~~~ 129 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++ +++.+.+ ++.|.... .|-.+ +..+
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v 122 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRD-LASL 122 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHH
Confidence 5689999997 9999999999999999 99999865 3333322 33443321 24333 1223
Q ss_pred HHHHHhhcC--CCccEEEecCCc
Q 025257 130 QQVLVDLTD--GGVDYSFECIGN 150 (255)
Q Consensus 130 ~~~i~~~~~--~~~d~v~d~~g~ 150 (255)
.+.+.+... +++|+++++.|.
T Consensus 123 ~~~~~~~~~~~g~iD~lVnnAg~ 145 (317)
T 3oec_A 123 QAVVDEALAEFGHIDILVSNVGI 145 (317)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 332332221 379999999883
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0023 Score=52.14 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=35.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRA 111 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~-~~~~~~~~~ 111 (255)
.++++||+|+ |++|.++++.+...|+ +|++++ +++++.+.+
T Consensus 45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~ 87 (328)
T 2qhx_A 45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL 87 (328)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence 4678999997 9999999999999999 999999 888766554
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0018 Score=53.43 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=64.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCe-EEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASR-VIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~-v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
.|.+|.|.|.|.+|...++.++..|. + |++.++++.+.+.+.+.|+..+ .++.+.+. ..|+|+.++
T Consensus 163 ~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvV~l~~ 229 (364)
T 2j6i_A 163 EGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGARRV-------ENIEELVA-----QADIVTVNA 229 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTEEEC-------SSHHHHHH-----TCSEEEECC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCcEec-------CCHHHHHh-----cCCEEEECC
Confidence 67899999999999999999999999 8 9999988877777777775421 22333333 478888776
Q ss_pred CcH----HHH-HHHHHHhccCCceEEEEcc
Q 025257 149 GNV----SVM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~----~~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
... ..+ +..+..++++ +.++.++.
T Consensus 230 P~t~~t~~li~~~~l~~mk~g-a~lIn~ar 258 (364)
T 2j6i_A 230 PLHAGTKGLINKELLSKFKKG-AWLVNTAR 258 (364)
T ss_dssp CCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred CCChHHHHHhCHHHHhhCCCC-CEEEECCC
Confidence 642 112 3566777885 77777654
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0095 Score=45.50 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=58.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhcC-CcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRAKNFG-VTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~~~~~~g-~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
.+.+|||.|+|.+|...++++...|+ +|++++.... ..+.+.+.+ .. ++...- .+. .+ .++|+||-+
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~-~i~~~~-~~~------dL--~~adLVIaA 98 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLR-VKRKKV-GEE------DL--LNVFFIVVA 98 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCE-EECSCC-CGG------GS--SSCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcE-EEECCC-CHh------Hh--CCCCEEEEC
Confidence 46899999999999999999999999 9999986543 233333333 33 332111 011 11 269999999
Q ss_pred CCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 148 IGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 148 ~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
++.+. .+..+...... |..|..-.
T Consensus 99 T~d~~-~N~~I~~~ak~-gi~VNvvD 122 (223)
T 3dfz_A 99 TNDQA-VNKFVKQHIKN-DQLVNMAS 122 (223)
T ss_dssp CCCTH-HHHHHHHHSCT-TCEEEC--
T ss_pred CCCHH-HHHHHHHHHhC-CCEEEEeC
Confidence 99988 54444444445 77776654
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0056 Score=50.08 Aligned_cols=130 Identities=12% Similarity=0.172 Sum_probs=79.2
Q ss_pred CEEEEEcCChHHHHHHHHHH-Hc-CCCeEEE-EcCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 72 SIVAVFGLGTVGLAVAEGAK-AA-GASRVIG-IDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~-~~-g~~~v~~-~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
-+|.|.|+|.+|...++.++ .. ++ ++++ .++++++.+.+ +++|+..++ .++.+.+.+ ..+|+|+.|
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~-~~vav~d~~~~~~~~~a~~~g~~~~~------~~~~~~l~~---~~~D~V~i~ 78 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGV-KLVAACALDSNQLEWAKNELGVETTY------TNYKDMIDT---ENIDAIFIV 78 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSE-EEEEEECSCHHHHHHHHHTTCCSEEE------SCHHHHHTT---SCCSEEEEC
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEecCCHHHHHHHHHHhCCCccc------CCHHHHhcC---CCCCEEEEe
Confidence 47899999999998888776 43 66 6655 46677776554 567875554 233333321 269999999
Q ss_pred CCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCch---hhc-----c-CcEEEEeeeCCCCccCcHHHHHHHHHcCC
Q 025257 148 IGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF---QLV-----T-GRVWKGTAFGGFKSRSQVPWLVDKYMKKE 218 (255)
Q Consensus 148 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~~-----~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 218 (255)
+......+.+..+++. |+-+.+... +..+.. .+. + +..+.... +......++.+.+++++|.
T Consensus 79 tp~~~h~~~~~~al~~--G~~v~~eKp-----~~~~~~~~~~l~~~a~~~~~~~~~~~~--~~r~~p~~~~~~~~i~~g~ 149 (346)
T 3cea_A 79 APTPFHPEMTIYAMNA--GLNVFCEKP-----LGLDFNEVDEMAKVIKSHPNQIFQSGF--MRRYDDSYRYAKKIVDNGD 149 (346)
T ss_dssp SCGGGHHHHHHHHHHT--TCEEEECSC-----CCSCHHHHHHHHHHHHTCTTSCEECCC--GGGTCHHHHHHHHHHHTTT
T ss_pred CChHhHHHHHHHHHHC--CCEEEEcCC-----CCCCHHHHHHHHHHHHhCCCCeEEEec--ccccCHHHHHHHHHHHcCC
Confidence 9987768888888887 454555432 222211 121 1 22332111 1112235788888888887
Q ss_pred CC
Q 025257 219 IK 220 (255)
Q Consensus 219 ~~ 220 (255)
+.
T Consensus 150 iG 151 (346)
T 3cea_A 150 IG 151 (346)
T ss_dssp TC
T ss_pred CC
Confidence 53
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0025 Score=50.92 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=35.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRA 111 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~-~~~~~~~~~ 111 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++ +++++.+.+
T Consensus 8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~ 50 (291)
T 1e7w_A 8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL 50 (291)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence 4678999997 9999999999999999 999999 888765544
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0028 Score=51.40 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=48.4
Q ss_pred cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhc----CCcEE-eCCCCCCchHHHHHHhhc
Q 025257 66 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK--FDRAKNF----GVTEF-VNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 66 ~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~--~~~~~~~----g~~~v-i~~~~~~~~~~~~i~~~~ 137 (255)
-..+++.+|||+|+ |.+|..+++.+...|. +|+++++++++ .+.+..+ +...+ .|..+ ...+.+.+...
T Consensus 9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~- 85 (335)
T 1rpn_A 9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD-ACSVQRAVIKA- 85 (335)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTC-HHHHHHHHHHH-
T ss_pred cccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCccccccchhhccccCceEEEECCCCC-HHHHHHHHHHc-
Confidence 34578899999998 9999999998888999 99999987654 1233332 22222 23322 12232233222
Q ss_pred CCCccEEEecCCc
Q 025257 138 DGGVDYSFECIGN 150 (255)
Q Consensus 138 ~~~~d~v~d~~g~ 150 (255)
.+|+|+++.+.
T Consensus 86 --~~d~Vih~A~~ 96 (335)
T 1rpn_A 86 --QPQEVYNLAAQ 96 (335)
T ss_dssp --CCSEEEECCSC
T ss_pred --CCCEEEECccc
Confidence 58999999874
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00061 Score=51.33 Aligned_cols=133 Identities=18% Similarity=0.252 Sum_probs=78.3
Q ss_pred cceeeEEE-EcCCceEEcCCCCCcccccccccchhhhhhHHHhhcC--CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEE
Q 025257 23 STFSQYTV-VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK--VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI 99 (255)
Q Consensus 23 g~~ae~~~-v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~--~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~ 99 (255)
..|.+|.. .+....+.+++.+++..+.. .+... +..... ++++.+||-.|+|. |..+..+++ .+..+|+
T Consensus 16 p~w~~~~~~~~~~~~~~~~~~~~f~~~~~-----~~~~~-~~~~l~~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~ 87 (205)
T 3grz_A 16 PEWEDYQPVFKDQEIIRLDPGLAFGTGNH-----QTTQL-AMLGIERAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVL 87 (205)
T ss_dssp ETTCCCCCSSTTCEEEEESCC-----CCH-----HHHHH-HHHHHHHHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEE
T ss_pred ccccccccCCCCceeEEecCCcccCCCCC-----ccHHH-HHHHHHHhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEE
Confidence 45777776 66777888888776655421 11111 112222 67889999999875 777777666 4555999
Q ss_pred EEcCCcchHHHHHh----cCCc--EEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH---HHHHHHHHhccCCceEEE
Q 025257 100 GIDIDPKKFDRAKN----FGVT--EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS---VMRAALECCHKGWGTSVI 170 (255)
Q Consensus 100 ~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~---~~~~~~~~l~~~~G~~v~ 170 (255)
+++.+++..+.+++ .+.. .++..+ . .+...+.||+|+....... .++.+.+.|+++ |+++.
T Consensus 88 ~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~----~~~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~g-G~l~~ 157 (205)
T 3grz_A 88 ATDISDESMTAAEENAALNGIYDIALQKTS-----L----LADVDGKFDLIVANILAEILLDLIPQLDSHLNED-GQVIF 157 (205)
T ss_dssp EEESCHHHHHHHHHHHHHTTCCCCEEEESS-----T----TTTCCSCEEEEEEESCHHHHHHHGGGSGGGEEEE-EEEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCceEEEecc-----c----cccCCCCceEEEECCcHHHHHHHHHHHHHhcCCC-CEEEE
Confidence 99999988777754 3432 122111 1 1111247999996554333 245556678896 98887
Q ss_pred Ecc
Q 025257 171 VGV 173 (255)
Q Consensus 171 ~g~ 173 (255)
.+.
T Consensus 158 ~~~ 160 (205)
T 3grz_A 158 SGI 160 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.004 Score=50.79 Aligned_cols=89 Identities=22% Similarity=0.381 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
-.|.+|.|.|.|.+|...++.++..|. +|++.++++++ +.+.+.|+.. .++.+.+. ..|+|+.++
T Consensus 163 l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~--------~~l~ell~-----~aDvV~l~~ 227 (335)
T 2g76_A 163 LNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQ--------LPLEEIWP-----LCDFITVHT 227 (335)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEE--------CCHHHHGG-----GCSEEEECC
T ss_pred CCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCcee--------CCHHHHHh-----cCCEEEEec
Confidence 367899999999999999999999999 99999987766 4566777642 12322222 489998876
Q ss_pred CcHH----HH-HHHHHHhccCCceEEEEcc
Q 025257 149 GNVS----VM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~~----~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
.... .+ ...+..++++ +.++.++.
T Consensus 228 P~t~~t~~li~~~~l~~mk~g-ailIN~ar 256 (335)
T 2g76_A 228 PLLPSTTGLLNDNTFAQCKKG-VRVVNCAR 256 (335)
T ss_dssp CCCTTTTTSBCHHHHTTSCTT-EEEEECSC
T ss_pred CCCHHHHHhhCHHHHhhCCCC-cEEEECCC
Confidence 6432 12 4677888996 88888866
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0003 Score=57.51 Aligned_cols=105 Identities=21% Similarity=0.231 Sum_probs=67.4
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhc----C-----------Cc--EEeCCC
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNF----G-----------VT--EFVNPK 123 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~----g-----------~~--~vi~~~ 123 (255)
+.....++++++||-.|+|+ |..+..+++..|. .+|++++.+++..+.+++. | .. .++..+
T Consensus 97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d 175 (336)
T 2b25_A 97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 175 (336)
T ss_dssp HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence 44556789999999999876 8888888888763 3999999999887777542 1 01 111111
Q ss_pred CCCchHHHHHHhhcCCCccEEEecCCcH-HHHHHHHHHhccCCceEEEEcc
Q 025257 124 DHDKPIQQVLVDLTDGGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 124 ~~~~~~~~~i~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
- .+. ...+..+.||+|+-....+ ..++.+.+.|+++ |+++.+..
T Consensus 176 ~--~~~---~~~~~~~~fD~V~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 220 (336)
T 2b25_A 176 I--SGA---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV 220 (336)
T ss_dssp T--TCC---C-------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred h--HHc---ccccCCCCeeEEEECCCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence 0 111 0011123699998544443 3378899999997 99987654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0041 Score=48.43 Aligned_cols=102 Identities=18% Similarity=0.297 Sum_probs=65.6
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhc--
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT-- 137 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~-- 137 (255)
....++++||-.|+|. |..++.+++.. +. +|++++.+++..+.+++ .|...-+.... .+..+.+....
T Consensus 75 ~~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~--gda~~~l~~l~~~ 150 (247)
T 1sui_A 75 LKLINAKNTMEIGVYT-GYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFRE--GPALPVLDEMIKD 150 (247)
T ss_dssp HHHTTCCEEEEECCGG-GHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHS
T ss_pred HHhhCcCEEEEeCCCc-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE--CCHHHHHHHHHhc
Confidence 3445678999999874 77888888886 56 99999999988777753 45421111111 22333333221
Q ss_pred ---CCCccEEEecCCc---HHHHHHHHHHhccCCceEEEEc
Q 025257 138 ---DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 138 ---~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.+.||+||-.... ...++.+.+.|++| |.++.-.
T Consensus 151 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~ 190 (247)
T 1sui_A 151 EKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN 190 (247)
T ss_dssp GGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEEC
T ss_pred cCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCC-eEEEEec
Confidence 2379999843322 34478889999997 9887643
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0019 Score=50.80 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|...++.+...|+ +|+++++ ++++.+.+ ++.+... ..|-.+ +..+.+.+.+...
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK-PSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence 4678999997 9999999999999999 9999998 66554433 3335332 124333 1223333332211
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 98 ~~~d~vi~~Ag 108 (274)
T 1ja9_A 98 GGLDFVMSNSG 108 (274)
T ss_dssp SCEEEEECCCC
T ss_pred CCCCEEEECCC
Confidence 26999999887
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.001 Score=51.90 Aligned_cols=94 Identities=26% Similarity=0.327 Sum_probs=57.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+++||+|+ |++|.++++.+...|+ +|+++++++++.+. ....|-.+ .+.+.+.+.+. .+++|+++++.|.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~------~~~~Dl~~-~~~v~~~~~~~-~~~id~lv~~Ag~ 72 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA------DLSTAEGR-KQAIADVLAKC-SKGMDGLVLCAGL 72 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHHHH-HHHHHHHHTTC-TTCCSEEEECCCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc------ccccCCCC-HHHHHHHHHHh-CCCCCEEEECCCC
Confidence 37899997 9999999999999999 99999987654321 10011111 01122222222 2378999998874
Q ss_pred HH------------------HHHHHHHHhcc-CCceEEEEccC
Q 025257 151 VS------------------VMRAALECCHK-GWGTSVIVGVA 174 (255)
Q Consensus 151 ~~------------------~~~~~~~~l~~-~~G~~v~~g~~ 174 (255)
.. ..+.+++.+.. +.|+++.++..
T Consensus 73 ~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~ 115 (257)
T 1fjh_A 73 GPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV 115 (257)
T ss_dssp CTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred CCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence 22 13344444433 22799998764
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.01 Score=49.60 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=70.9
Q ss_pred hhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-----------hcCC--cEE--eCC
Q 025257 58 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-----------NFGV--TEF--VNP 122 (255)
Q Consensus 58 a~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-----------~~g~--~~v--i~~ 122 (255)
.+..+.....++++++||=+|+|. |..++++++..|+.+|++++.+++-.+.++ ..|. ..+ +.-
T Consensus 161 ~i~~il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 161 LVAQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTT-SHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 344466778899999999999874 888889998889856999999986544442 2342 222 211
Q ss_pred CCCCchHHHHHHhhcCCCccEEEec-C--C--cHHHHHHHHHHhccCCceEEEEccCC
Q 025257 123 KDHDKPIQQVLVDLTDGGVDYSFEC-I--G--NVSVMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 123 ~~~~~~~~~~i~~~~~~~~d~v~d~-~--g--~~~~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+-.+.++.+.+. .+|+|+-. . . ....+...++.|++| |+++......
T Consensus 240 D~~~lp~~d~~~-----~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPG-GrIVssE~f~ 291 (438)
T 3uwp_A 240 DFLSEEWRERIA-----NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSKPFA 291 (438)
T ss_dssp CTTSHHHHHHHH-----TCSEEEECCTTCCHHHHHHHHHHHTTSCTT-CEEEESSCSS
T ss_pred cccCCccccccC-----CccEEEEcccccCchHHHHHHHHHHcCCCC-cEEEEeeccc
Confidence 110122322111 58999832 2 1 122366778899997 9999886543
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0025 Score=51.63 Aligned_cols=77 Identities=25% Similarity=0.282 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC---------CcchHHHH----HhcCCcEEeCCCCCCchH---HHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI---------DPKKFDRA----KNFGVTEFVNPKDHDKPI---QQV 132 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~---------~~~~~~~~----~~~g~~~vi~~~~~~~~~---~~~ 132 (255)
.++++||+|+ |++|...++.+...|+ +|++.++ +.++.+.+ ++.+...+.|..+ .... .+.
T Consensus 8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~-~~~~~~~~~~ 85 (319)
T 1gz6_A 8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS-VEAGEKLVKT 85 (319)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC-GGGHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCC-HHHHHHHHHH
Confidence 4678999997 9999999999999999 9999754 44444332 3344444455444 1222 233
Q ss_pred HHhhcCCCccEEEecCC
Q 025257 133 LVDLTDGGVDYSFECIG 149 (255)
Q Consensus 133 i~~~~~~~~d~v~d~~g 149 (255)
+.+.. +++|+++++.|
T Consensus 86 ~~~~~-g~iD~lVnnAG 101 (319)
T 1gz6_A 86 ALDTF-GRIDVVVNNAG 101 (319)
T ss_dssp HHHHT-SCCCEEEECCC
T ss_pred HHHHc-CCCCEEEECCC
Confidence 33322 37999999887
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0034 Score=51.56 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=62.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|.|.|.|.+|...++.++..|. +|++.+++. +.+.+.+.|+..+ .++.+.+. ..|+|+-++.
T Consensus 159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~~-------~~l~ell~-----~aDiV~l~~P 224 (352)
T 3gg9_A 159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAVA-------ESKDALFE-----QSDVLSVHLR 224 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEEC-------SSHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceEe-------CCHHHHHh-----hCCEEEEecc
Confidence 57799999999999999999999999 999999875 4455666776421 23444443 3688887664
Q ss_pred c-HH----HHHHHHHHhccCCceEEEEc
Q 025257 150 N-VS----VMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 150 ~-~~----~~~~~~~~l~~~~G~~v~~g 172 (255)
. +. .-...+..++++ ..++.++
T Consensus 225 lt~~t~~li~~~~l~~mk~g-ailIN~a 251 (352)
T 3gg9_A 225 LNDETRSIITVADLTRMKPT-ALFVNTS 251 (352)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred CcHHHHHhhCHHHHhhCCCC-cEEEECC
Confidence 2 11 023567778886 7887776
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0019 Score=49.55 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=68.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCcEEeCCCCCCchHHHHHHhhc
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
+.....+.++++||..|+|. |..+..+++.. . +|++++.+++..+.+++. +.-.++.. +..+... .
T Consensus 62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~-----d~~~~~~--~ 131 (231)
T 1vbf_A 62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILG-----DGTLGYE--E 131 (231)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEES-----CGGGCCG--G
T ss_pred HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEEC-----Ccccccc--c
Confidence 44666788999999999985 77888887764 6 999999999888888653 21112211 1111010 1
Q ss_pred CCCccEEEecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 138 DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.||+|+....-....+.+.+.|+++ |+++..-.
T Consensus 132 ~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~l~~~~~ 166 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILPIG 166 (231)
T ss_dssp GCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEEC
T ss_pred CCCccEEEECCcHHHHHHHHHHHcCCC-cEEEEEEc
Confidence 237999996655444356788899997 98877643
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0014 Score=51.90 Aligned_cols=78 Identities=28% Similarity=0.379 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE-E--eCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--i~~~~~~~~~~~~i~~~~~--~ 139 (255)
.++++||+|+ |++|...+..+...|+ +|+++++++++.+.+. +.+... . .|-.+ +..+.+.+.+... +
T Consensus 33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g 110 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISD-PKSVEETISQQEKDFG 110 (279)
T ss_dssp TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC-HHHHHHHHHHHHHHhC
Confidence 4679999997 9999999988888899 9999998876654442 224321 1 24333 1223333332211 3
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
.+|+++++.|
T Consensus 111 ~id~li~~Ag 120 (279)
T 3ctm_A 111 TIDVFVANAG 120 (279)
T ss_dssp CCSEEEECGG
T ss_pred CCCEEEECCc
Confidence 6999999877
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00063 Score=53.02 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcC--CCccEEEe
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD--GGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~--~~~d~v~d 146 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. + ...|-.+ ++.+.+.+.+... +++|++++
T Consensus 14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~-~~~~~~~~~~~~~~~g~id~lv~ 87 (247)
T 1uzm_A 14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTD-SDAVDRAFTAVEEHQGPVEVLVS 87 (247)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTC-HHHHHHHHHHHHHHHSSCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCC-HHHHHHHHHHHHHHcCCCCEEEE
Confidence 4678999997 9999999999999999 9999998876543322 1 2234433 1223222332211 36999999
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
+.|.
T Consensus 88 ~Ag~ 91 (247)
T 1uzm_A 88 NAGL 91 (247)
T ss_dssp ECSC
T ss_pred CCCC
Confidence 8874
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0014 Score=50.08 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=66.0
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhc--
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT-- 137 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~-- 137 (255)
....++.+||-.|+|. |..+..+++.. +. +|++++.+++..+.+++ .|...-+.... .+..+.+....
T Consensus 54 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~ 129 (223)
T 3duw_A 54 VQIQGARNILEIGTLG-GYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERANLNDRVEVRT--GLALDSLQQIENE 129 (223)
T ss_dssp HHHHTCSEEEEECCTT-SHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE--SCHHHHHHHHHHT
T ss_pred HHhhCCCEEEEecCCc-cHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHHHHhc
Confidence 3456788999999874 78888888876 56 99999999988777643 35321011111 23333332221
Q ss_pred -CCCccEEEecCCc---HHHHHHHHHHhccCCceEEEEcc
Q 025257 138 -DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 -~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.||+||-.... +..++.+.+.|+++ |.++.-..
T Consensus 130 ~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~~ 168 (223)
T 3duw_A 130 KYEPFDFIFIDADKQNNPAYFEWALKLSRPG-TVIIGDNV 168 (223)
T ss_dssp TCCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEESC
T ss_pred CCCCcCEEEEcCCcHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence 1369999943322 33478888999997 98776544
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00082 Score=52.82 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=49.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v~ 145 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++.++.+. ..+..+ .|-.+ ++.+.+.+.+... +++|+++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~---~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~lv 101 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSAD---PDIHTVAGDISK-PETADRIVREGIERFGRIDSLV 101 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSS---TTEEEEESCTTS-HHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccc---CceEEEEccCCC-HHHHHHHHHHHHHHCCCCCEEE
Confidence 4679999997 9999999999999999 99999987654321 122211 23333 1223222332211 3799999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 102 ~nAg~ 106 (260)
T 3un1_A 102 NNAGV 106 (260)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99873
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0019 Score=51.44 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=50.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHHH-----hcCCcE-E--eCCCCC---CchHHHHHHhh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRAK-----NFGVTE-F--VNPKDH---DKPIQQVLVDL 136 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~~~~~-----~~g~~~-v--i~~~~~---~~~~~~~i~~~ 136 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++ ++.+.+. +.+... . .|-.+. +..+.+.+.+.
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~ 100 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC 100 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence 4678999997 9999999999999999 999999987 6554432 234221 1 222210 12222222222
Q ss_pred cC--CCccEEEecCC
Q 025257 137 TD--GGVDYSFECIG 149 (255)
Q Consensus 137 ~~--~~~d~v~d~~g 149 (255)
.. +++|+++++.|
T Consensus 101 ~~~~g~iD~lvnnAG 115 (288)
T 2x9g_A 101 FRAFGRCDVLVNNAS 115 (288)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHhcCCCCEEEECCC
Confidence 11 37999999887
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0033 Score=49.42 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=52.2
Q ss_pred CCCCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC-cE-EeCCCCCCchHHHHHHhhc-
Q 025257 68 VEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV-TE-FVNPKDHDKPIQQVLVDLT- 137 (255)
Q Consensus 68 ~~~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~-~~-vi~~~~~~~~~~~~i~~~~- 137 (255)
..++++|||+|+ +++|.+.++.+...|+ +|++++++++..+.++ +.+. .. ..|-.+ +..+.+.+.+..
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVAD-DAQIDALFASLKT 88 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCC-HHHHHHHHHHHHH
Confidence 456789999984 6999999999999999 9999998865544443 2332 22 234333 122322232221
Q ss_pred -CCCccEEEecCCc
Q 025257 138 -DGGVDYSFECIGN 150 (255)
Q Consensus 138 -~~~~d~v~d~~g~ 150 (255)
.+++|+++++.|.
T Consensus 89 ~~g~id~lv~nAg~ 102 (271)
T 3ek2_A 89 HWDSLDGLVHSIGF 102 (271)
T ss_dssp HCSCEEEEEECCCC
T ss_pred HcCCCCEEEECCcc
Confidence 1379999998873
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.016 Score=41.30 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=59.3
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHHH---hcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEE
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRAK---NFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~~~~~---~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
..+++|.|+|.+|...++.+...|. +|+++++++ ++.+.++ ..|...+. |..+ ++ .+++..-.++|+|+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~--~~---~l~~a~i~~ad~vi 76 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIPGDSND--SS---VLKKAGIDRCRAIL 76 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEESCTTS--HH---HHHHHTTTTCSEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCeEEEcCCCC--HH---HHHHcChhhCCEEE
Confidence 4679999999999999999999999 999999874 5554443 33554443 2222 22 23332112799999
Q ss_pred ecCCcHHHH---HHHHHHhccCCceEEEE
Q 025257 146 ECIGNVSVM---RAALECCHKGWGTSVIV 171 (255)
Q Consensus 146 d~~g~~~~~---~~~~~~l~~~~G~~v~~ 171 (255)
-+++....- ....+.+.+. .+++..
T Consensus 77 ~~~~~d~~n~~~~~~a~~~~~~-~~ii~~ 104 (153)
T 1id1_A 77 ALSDNDADNAFVVLSAKDMSSD-VKTVLA 104 (153)
T ss_dssp ECSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred EecCChHHHHHHHHHHHHHCCC-CEEEEE
Confidence 998875522 2233344343 455543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0021 Score=50.85 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=67.3
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----c-CCcE--EeCCCCCCchHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----F-GVTE--FVNPKDHDKPIQQV 132 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~-g~~~--vi~~~~~~~~~~~~ 132 (255)
+.....++++++||-.|+|. |..+..+++.. +. +|++++.+++..+.+++ . |.+. ++.. +..+
T Consensus 102 ~~~~~~~~~~~~VLD~G~G~-G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~-----d~~~- 173 (275)
T 1yb2_A 102 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS-----DIAD- 173 (275)
T ss_dssp ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS-----CTTT-
T ss_pred HHHHcCCCCcCEEEEecCCC-CHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC-----chhc-
Confidence 44556788999999999873 77888888874 56 99999999988877754 2 5322 2211 1111
Q ss_pred HHhhcCCCccEEEecCCcH-HHHHHHHHHhccCCceEEEEcc
Q 025257 133 LVDLTDGGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 133 i~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
....+.||+|+-....+ ..++.+.+.|+++ |+++....
T Consensus 174 --~~~~~~fD~Vi~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 212 (275)
T 1yb2_A 174 --FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP 212 (275)
T ss_dssp --CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred --cCcCCCccEEEEcCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 11123799999654433 4478899999997 99887754
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.004 Score=46.59 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=44.0
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
++||+|+ |.+|...++.+. .|+ +|++++++++ ....|-.+ ++.+.+.+.+. +++|+++++.|
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~-~~~~~~~~~~~--~~~d~vi~~ag 67 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITN-IDSIKKMYEQV--GKVDAIVSATG 67 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTC-HHHHHHHHHHH--CCEEEEEECCC
T ss_pred EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCC-HHHHHHHHHHh--CCCCEEEECCC
Confidence 7999997 999999998888 899 9999998764 12234333 12233333333 36999999887
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0035 Score=50.12 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=57.8
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-------chHHHH---HhcCCcEE-eCCCCCCchHHHHHHhhcC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-------KKFDRA---KNFGVTEF-VNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-------~~~~~~---~~~g~~~v-i~~~~~~~~~~~~i~~~~~ 138 (255)
+.+|||+|+ |.+|..+++.+...|. +|+++++++ ++.+.+ ...++..+ .|..+ . +.+.+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d--~---~~l~~~~~ 75 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND--H---ETLVKAIK 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC--H---HHHHHHHT
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC--H---HHHHHHHh
Confidence 357999998 9999999988888898 999999886 444433 23465543 34333 2 22333322
Q ss_pred CCccEEEecCCcH--HHHHHHHHHhccC--CceEE
Q 025257 139 GGVDYSFECIGNV--SVMRAALECCHKG--WGTSV 169 (255)
Q Consensus 139 ~~~d~v~d~~g~~--~~~~~~~~~l~~~--~G~~v 169 (255)
++|+||++++.. .....+++.+... -.+++
T Consensus 76 -~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 109 (307)
T 2gas_A 76 -QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF 109 (307)
T ss_dssp -TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred -CCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence 599999998852 1133444544432 13665
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0046 Score=50.11 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=62.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
.|.+|.|.|.|.+|...++.++..|. +|++.++ ++++ +.+++.|+.. . .++.+.+. ..|+|+.++
T Consensus 145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~-~------~~l~ell~-----~aDvVil~~ 210 (320)
T 1gdh_A 145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATF-H------DSLDSLLS-----VSQFFSLNA 210 (320)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEE-C------SSHHHHHH-----HCSEEEECC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEE-c------CCHHHHHh-----hCCEEEEec
Confidence 67899999999999999999999999 9999998 7766 3556677642 1 23333333 378888776
Q ss_pred CcHH----HH-HHHHHHhccCCceEEEEcc
Q 025257 149 GNVS----VM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~~----~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
.... .+ +..+..++++ ..++.++.
T Consensus 211 p~~~~t~~~i~~~~l~~mk~g-ailIn~ar 239 (320)
T 1gdh_A 211 PSTPETRYFFNKATIKSLPQG-AIVVNTAR 239 (320)
T ss_dssp CCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred cCchHHHhhcCHHHHhhCCCC-cEEEECCC
Confidence 6321 12 3466778885 77777754
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0026 Score=51.75 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=49.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-----cchHHHH----HhcCCc--E-EeCCCCCCchHHHHHHhhc
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-----PKKFDRA----KNFGVT--E-FVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~-----~~~~~~~----~~~g~~--~-vi~~~~~~~~~~~~i~~~~ 137 (255)
++++||+|+ |++|.+.++.+...|+ +|++++++ .++.+.+ ++.+.. . ..|-.+ +..+.+.+.+..
T Consensus 5 ~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd-~~~v~~~~~~~~ 82 (324)
T 3u9l_A 5 KKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQS-QVSVDRAIDQII 82 (324)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHH
Confidence 578999997 9999999999999999 99998765 2333333 223322 1 124333 123333333322
Q ss_pred C--CCccEEEecCC
Q 025257 138 D--GGVDYSFECIG 149 (255)
Q Consensus 138 ~--~~~d~v~d~~g 149 (255)
. |++|+++++.|
T Consensus 83 ~~~g~iD~lVnnAG 96 (324)
T 3u9l_A 83 GEDGRIDVLIHNAG 96 (324)
T ss_dssp HHHSCCSEEEECCC
T ss_pred HHcCCCCEEEECCC
Confidence 1 37999999998
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0045 Score=50.82 Aligned_cols=91 Identities=16% Similarity=0.309 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHH-HcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~-~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
-.|.+|.|.|.|.+|...++.++ ..|. +|++.++++++.+...+.|+..+ .++.+.+. ..|+|+.+
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvVil~ 227 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV-------DSLEELAR-----RSDCVSVS 227 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC-------SSHHHHHH-----HCSEEEEC
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe-------CCHHHHhc-----cCCEEEEe
Confidence 35789999999999999999999 9999 99999998877766666665421 12333333 36888877
Q ss_pred CCcHH----HH-HHHHHHhccCCceEEEEcc
Q 025257 148 IGNVS----VM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 148 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
+.... .+ ...+..++++ ..++.++.
T Consensus 228 vp~~~~t~~li~~~~l~~mk~g-ailin~sr 257 (348)
T 2w2k_A 228 VPYMKLTHHLIDEAFFAAMKPG-SRIVNTAR 257 (348)
T ss_dssp CCCSGGGTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred CCCChHHHHHhhHHHHhcCCCC-CEEEECCC
Confidence 65321 12 3456677775 66665543
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0034 Score=49.55 Aligned_cols=89 Identities=24% Similarity=0.262 Sum_probs=62.8
Q ss_pred hhhhhH--HHhhcCC-CCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHH
Q 025257 56 PTGLGA--VWNTAKV-EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 131 (255)
Q Consensus 56 ~ta~~~--l~~~~~~-~~~~~vlI~G~g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~ 131 (255)
||++.+ +.+...+ -.|++++|.|.| .+|..+++++...|+ +|++..+. . .++.+
T Consensus 142 cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~-------------------t--~~L~~ 199 (285)
T 3p2o_A 142 CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIK-------------------T--KDLSL 199 (285)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C--SCHHH
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC-------------------c--hhHHH
Confidence 455444 2344433 488999999985 589999999999999 88887642 1 34444
Q ss_pred HHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 132 VLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 132 ~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.++ .+|+++.++|.+..+ .-++++++ ..++.+|..
T Consensus 200 ~~~-----~ADIVI~Avg~p~~I--~~~~vk~G-avVIDVgi~ 234 (285)
T 3p2o_A 200 YTR-----QADLIIVAAGCVNLL--RSDMVKEG-VIVVDVGIN 234 (285)
T ss_dssp HHT-----TCSEEEECSSCTTCB--CGGGSCTT-EEEEECCCE
T ss_pred Hhh-----cCCEEEECCCCCCcC--CHHHcCCC-eEEEEeccC
Confidence 444 489999999987622 33567886 888888764
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0022 Score=49.52 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=49.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCc--E-E-eCCCCCCchHHHHHHhhcC--C
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRA----KNFGVT--E-F-VNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~--~-v-i~~~~~~~~~~~~i~~~~~--~ 139 (255)
+++||+|+ |++|...++.+...|+ +|+++ ++++++.+.+ ++.+.. . + .|-.+ ++.+.+.+.+... +
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE-AEAATALVHQAAEVLG 79 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCC-HHHHHHHHHHHHHhcC
Confidence 57999997 9999999999988999 99998 7877765544 223432 2 1 24333 1222222222211 3
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|+++++.|
T Consensus 80 ~~d~li~~Ag 89 (245)
T 2ph3_A 80 GLDTLVNNAG 89 (245)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6999999887
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0015 Score=53.13 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=49.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHhcC----CcEE-eCCCCCCchHHHHHHhhcCCCcc
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF--DRAKNFG----VTEF-VNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~--~~~~~~g----~~~v-i~~~~~~~~~~~~i~~~~~~~~d 142 (255)
+.+|||+|+ |.+|..+++.+...|. +|+++++++++. +.+++++ ...+ .|..+ ...+.+.+... .+|
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~---~~d 77 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLE-FSNIIRTIEKV---QPD 77 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTC-HHHHHHHHHHH---CCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEEECCCCC-HHHHHHHHHhc---CCC
Confidence 578999998 9999999998888999 999999887643 2344442 1111 12222 12222223222 589
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+|+++++.
T Consensus 78 ~vih~A~~ 85 (345)
T 2z1m_A 78 EVYNLAAQ 85 (345)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.012 Score=46.70 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=36.8
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~ 113 (255)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 45 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK 45 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence 589999999999999999999999 99999999988777654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0012 Score=50.53 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=66.5
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhcC-
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~~- 138 (255)
....++.+||-.|+|. |..+..+++.. +. +|++++.+++..+.+++ .|...-+.... .+..+.+.....
T Consensus 60 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~ 135 (225)
T 3tr6_A 60 VKLMQAKKVIDIGTFT-GYSAIAMGLALPKDG-TLITCDVDEKSTALAKEYWEKAGLSDKIGLRL--SPAKDTLAELIHA 135 (225)
T ss_dssp HHHHTCSEEEEECCTT-SHHHHHHHTTCCTTC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE--SCHHHHHHHHHTT
T ss_pred HHhhCCCEEEEeCCcc-hHHHHHHHHhCCCCC-EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe--CCHHHHHHHhhhc
Confidence 3445778999999875 78888888876 45 99999999988777744 35321011111 233333333221
Q ss_pred ---CCccEEEecCCc---HHHHHHHHHHhccCCceEEEEcc
Q 025257 139 ---GGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 139 ---~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.||+|+-.... ...++.+.+.|+++ |.++.-..
T Consensus 136 ~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~~ 175 (225)
T 3tr6_A 136 GQAWQYDLIYIDADKANTDLYYEESLKLLREG-GLIAVDNV 175 (225)
T ss_dssp TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEECS
T ss_pred cCCCCccEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence 479999943332 33478888999997 99886543
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0041 Score=49.07 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=59.8
Q ss_pred hhcCC-CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCc
Q 025257 64 NTAKV-EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 64 ~~~~~-~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
+...+ -.|++++|.|. +.+|..+++++...|+ +|++..+. . .++.+.++ .+
T Consensus 153 ~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~-------------------T--~~L~~~~~-----~A 205 (286)
T 4a5o_A 153 ASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRF-------------------T--RDLADHVS-----RA 205 (286)
T ss_dssp HHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTT-------------------C--SCHHHHHH-----TC
T ss_pred HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC-------------------C--cCHHHHhc-----cC
Confidence 44444 48899999997 5699999999999999 88887532 1 34544454 48
Q ss_pred cEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 142 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
|+++.++|.+..+ .-.+++++ ..++.+|..
T Consensus 206 DIVI~Avg~p~~I--~~~~vk~G-avVIDvgi~ 235 (286)
T 4a5o_A 206 DLVVVAAGKPGLV--KGEWIKEG-AIVIDVGIN 235 (286)
T ss_dssp SEEEECCCCTTCB--CGGGSCTT-CEEEECCSC
T ss_pred CEEEECCCCCCCC--CHHHcCCC-eEEEEeccc
Confidence 9999999987622 23567886 888888864
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0038 Score=49.68 Aligned_cols=89 Identities=18% Similarity=0.143 Sum_probs=64.0
Q ss_pred hhhhhH--HHhhcCC-CCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHH
Q 025257 56 PTGLGA--VWNTAKV-EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 131 (255)
Q Consensus 56 ~ta~~~--l~~~~~~-~~~~~vlI~G~g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~ 131 (255)
||+... +.+...+ -.|.+++|.|+| .+|.-+++++...|+ +|++..+. . .++.+
T Consensus 147 cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t--~~L~~ 204 (301)
T 1a4i_A 147 CTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSK-------------------T--AHLDE 204 (301)
T ss_dssp HHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C--SSHHH
T ss_pred chHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECC-------------------c--ccHHH
Confidence 455544 2333443 478999999997 689999999999999 88877532 2 45555
Q ss_pred HHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 132 VLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 132 ~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.++ .+|+|+.++|.+. + -.-++++++ ..++.+|..
T Consensus 205 ~~~-----~ADIVI~Avg~p~-~-I~~~~vk~G-avVIDVgi~ 239 (301)
T 1a4i_A 205 EVN-----KGDILVVATGQPE-M-VKGEWIKPG-AIVIDCGIN 239 (301)
T ss_dssp HHT-----TCSEEEECCCCTT-C-BCGGGSCTT-CEEEECCCB
T ss_pred Hhc-----cCCEEEECCCCcc-c-CCHHHcCCC-cEEEEccCC
Confidence 554 4899999999886 3 223457886 899999874
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0023 Score=50.27 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=64.4
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE--eCCCCCCchHHHHHHhhcCC
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF--VNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v--i~~~~~~~~~~~~i~~~~~~ 139 (255)
+.....++++.+||-.|+|. |..+..+++ .|+ +|++++.+++-.+.+++.-.... .+..+ .+. .......+
T Consensus 37 il~~l~l~~g~~VLDlGcGt-G~~a~~La~-~g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~--~~~--~~~~~~~~ 109 (261)
T 3iv6_A 37 DIFLENIVPGSTVAVIGAST-RFLIEKALE-RGA-SVTVFDFSQRMCDDLAEALADRCVTIDLLD--ITA--EIPKELAG 109 (261)
T ss_dssp HHHTTTCCTTCEEEEECTTC-HHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHTSSSCCEEEECC--TTS--CCCGGGTT
T ss_pred HHHhcCCCCcCEEEEEeCcc-hHHHHHHHh-cCC-EEEEEECCHHHHHHHHHHHHhccceeeeee--ccc--ccccccCC
Confidence 44666788999999999975 878888776 488 99999999998888865322111 11111 000 00001123
Q ss_pred CccEEEecCC-----c---HHHHHHHHHHhccCCceEEEE
Q 025257 140 GVDYSFECIG-----N---VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 140 ~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.||+|+-+.. . ...+....+.+ ++ |+++..
T Consensus 110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG-G~l~lS 147 (261)
T 3iv6_A 110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GS-GTVRAS 147 (261)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC-cEEEEE
Confidence 7999985432 1 22467777788 96 988754
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0021 Score=52.25 Aligned_cols=72 Identities=22% Similarity=0.201 Sum_probs=48.6
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+|||+|+ |.+|..+++.+...|. +|+++++++.+.+.+.+.+...+ .|..+ . +.+.+... ++|+|+++.+
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d--~---~~~~~~~~-~~d~vih~a~ 86 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLAYLEPECRVAEMLD--H---AGLERALR-GLDGVIFSAG 86 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGGGGCCEEEECCTTC--H---HHHHHHTT-TCSEEEEC--
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhccCCeEEEEecCCC--H---HHHHHHHc-CCCEEEECCc
Confidence 47999997 9999999999988998 99999998776554443354433 23332 2 23333332 5999999987
Q ss_pred c
Q 025257 150 N 150 (255)
Q Consensus 150 ~ 150 (255)
.
T Consensus 87 ~ 87 (342)
T 2x4g_A 87 Y 87 (342)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0057 Score=48.02 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=50.0
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHHH-hcCCcEE--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK---KFDRAK-NFGVTEF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~---~~~~~~-~~g~~~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|++++++++ ..+.+. +.+.... .|-.+ ++.+.+.+.+...
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE-DASIDTMFAELGKVW 85 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 4678999985 6999999999999999 9999998762 233332 2232222 34433 1223333333322
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 86 g~iD~lv~~Ag 96 (265)
T 1qsg_A 86 PKFDGFVHSIG 96 (265)
T ss_dssp SSEEEEEECCC
T ss_pred CCCCEEEECCC
Confidence 27999999887
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0067 Score=49.58 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=64.9
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
.+|.|+|.|.+|...+..++..|. +|++.++++++.+.+++.|+... .++.+.+.+.. ...|+|+-|+...
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~~-------~~~~e~~~~a~-~~aDlVilavP~~ 79 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDVS-------ADLEATLQRAA-AEDALIVLAVPMT 79 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCEE-------SCHHHHHHHHH-HTTCEEEECSCHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeee-------CCHHHHHHhcc-cCCCEEEEeCCHH
Confidence 579999999999999999999998 99999999999999999987432 22333333220 1479999998865
Q ss_pred HHHHHHHHH---hccCCceEEEEccC
Q 025257 152 SVMRAALEC---CHKGWGTSVIVGVA 174 (255)
Q Consensus 152 ~~~~~~~~~---l~~~~G~~v~~g~~ 174 (255)
. +...++. ++++ ..++.++..
T Consensus 80 ~-~~~vl~~l~~~~~~-~iv~Dv~Sv 103 (341)
T 3ktd_A 80 A-IDSLLDAVHTHAPN-NGFTDVVSV 103 (341)
T ss_dssp H-HHHHHHHHHHHCTT-CCEEECCSC
T ss_pred H-HHHHHHHHHccCCC-CEEEEcCCC
Confidence 4 4444332 3454 556666543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0057 Score=48.77 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=60.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCCcchH--HHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKF--DRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~--~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
..+|||+|+ |.+|..+++.+...| . +|+++++++++. +.+...++..+ .|..+ . +.+.+... ++|.||
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d--~---~~l~~~~~-~~d~vi 77 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKKAAKELRLQGAEVVQGDQDD--Q---VIMELALN-GAYATF 77 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTSHHHHHHHHTTCEEEECCTTC--H---HHHHHHHT-TCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCCHHHHHHHHCCCEEEEecCCC--H---HHHHHHHh-cCCEEE
Confidence 468999998 999999998888888 8 999999987654 33344565543 23332 2 22333322 599999
Q ss_pred ecCCcHH---------HHHHHHHHhcc-CCceEEEEcc
Q 025257 146 ECIGNVS---------VMRAALECCHK-GWGTSVIVGV 173 (255)
Q Consensus 146 d~~g~~~---------~~~~~~~~l~~-~~G~~v~~g~ 173 (255)
.+.+... ....+++.+.. +-++++..+.
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~ 115 (299)
T 2wm3_A 78 IVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGL 115 (299)
T ss_dssp ECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred EeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 9987421 12344444443 2147776544
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0023 Score=49.86 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=32.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDR 110 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~~~~~~~~~ 110 (255)
+++++||+|+ +++|.+.++.+...|+ +|+++ .+++++.+.
T Consensus 6 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~ 47 (255)
T 3icc_A 6 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEE 47 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Confidence 5789999997 8999999999999999 88886 555554443
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.012 Score=46.55 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=60.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-EEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
+|.|+|+|.+|.+.+..+...|. +|++.++++++.+.+++.|.. .+... + .+. ..+|+|+.|+...
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~------~----~~~--~~~D~vi~av~~~ 68 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQD------L----SLL--QTAKIIFLCTPIQ 68 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESC------G----GGG--TTCSEEEECSCHH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccccCC------H----HHh--CCCCEEEEECCHH
Confidence 68899999999999999988998 999999999988888877753 22211 1 112 2589999999865
Q ss_pred HHHHHHHHH----hccCCceEEEEc
Q 025257 152 SVMRAALEC----CHKGWGTSVIVG 172 (255)
Q Consensus 152 ~~~~~~~~~----l~~~~G~~v~~g 172 (255)
. ....++. ++++ ..++.++
T Consensus 69 ~-~~~~~~~l~~~~~~~-~~vv~~~ 91 (279)
T 2f1k_A 69 L-ILPTLEKLIPHLSPT-AIVTDVA 91 (279)
T ss_dssp H-HHHHHHHHGGGSCTT-CEEEECC
T ss_pred H-HHHHHHHHHhhCCCC-CEEEECC
Confidence 4 4444443 4453 4555553
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0035 Score=49.95 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=32.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
++.+|+|.|+|++|..+++.+...|..++.+++.+.
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 447999999999999999999999998999998665
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0036 Score=54.19 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=52.5
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-------HHHHHhcCCcEE---eCCCCCCchHHHHHHhh
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-------FDRAKNFGVTEF---VNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-------~~~~~~~g~~~v---i~~~~~~~~~~~~i~~~ 136 (255)
++++.++||+|+ |++|...++.+...|+.+|+.+.++... .+.+++.|.... .|-.+ ...+.+.+.+
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~~- 333 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAE-RDALAALVTA- 333 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSC-HHHHHHHHHH-
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCC-HHHHHHHHhc-
Confidence 578899999997 9999999988888998568888887632 122344564322 23333 1223333332
Q ss_pred cCCCccEEEecCCc
Q 025257 137 TDGGVDYSFECIGN 150 (255)
Q Consensus 137 ~~~~~d~v~d~~g~ 150 (255)
+.+|.||++.|.
T Consensus 334 --~~ld~VVh~AGv 345 (511)
T 2z5l_A 334 --YPPNAVFHTAGI 345 (511)
T ss_dssp --SCCSEEEECCCC
T ss_pred --CCCcEEEECCcc
Confidence 479999999883
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0033 Score=52.32 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=61.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|.|+|.|.+|...++.++..|. +|++.++++.+.+..++.|+... .++.+.+. ..|+|+.++.
T Consensus 190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~~~-------~~l~ell~-----~aDvV~l~~P 256 (393)
T 2nac_A 190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH-------ATREDMYP-----VCDVVTLNCP 256 (393)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC-------SSHHHHGG-----GCSEEEECSC
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCceec-------CCHHHHHh-----cCCEEEEecC
Confidence 57899999999999999999999999 99999988766666667775421 12222222 3677776655
Q ss_pred cH----HHH-HHHHHHhccCCceEEEEcc
Q 025257 150 NV----SVM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~----~~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
.. ..+ +..+..|+++ ..++.++.
T Consensus 257 lt~~t~~li~~~~l~~mk~g-ailIN~aR 284 (393)
T 2nac_A 257 LHPETEHMINDETLKLFKRG-AYIVNTAR 284 (393)
T ss_dssp CCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred CchHHHHHhhHHHHhhCCCC-CEEEECCC
Confidence 21 112 3556677775 66666653
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0047 Score=49.21 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCC--CeEEEEcCCcchHHHHHh-c-----CCcE---EeCCCCCCchHHHHHHhhc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGA--SRVIGIDIDPKKFDRAKN-F-----GVTE---FVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~--~~v~~~~~~~~~~~~~~~-~-----g~~~---vi~~~~~~~~~~~~i~~~~ 137 (255)
.++++||+|+ |++|.+.++.+...|+ .+|+.+++++++.+.+.+ + +... ..|-.+ ++.+.+.+.+..
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~ 110 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ-AEKIKPFIENLP 110 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTC-GGGHHHHHHTSC
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHH
Confidence 4689999997 8999998877766654 289999998887666532 1 3221 124333 244544455443
Q ss_pred C--CCccEEEecCC
Q 025257 138 D--GGVDYSFECIG 149 (255)
Q Consensus 138 ~--~~~d~v~d~~g 149 (255)
. +++|+++++.|
T Consensus 111 ~~~g~iD~lVnnAG 124 (287)
T 3rku_A 111 QEFKDIDILVNNAG 124 (287)
T ss_dssp GGGCSCCEEEECCC
T ss_pred HhcCCCCEEEECCC
Confidence 3 27999999888
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0074 Score=50.56 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=54.8
Q ss_pred hcCC-CCCCEEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCCcchH----------------HHHHhcCCcEE---eCC
Q 025257 65 TAKV-EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKKF----------------DRAKNFGVTEF---VNP 122 (255)
Q Consensus 65 ~~~~-~~~~~vlI~G~-g~vG~~a~~l~~~-~g~~~v~~~~~~~~~~----------------~~~~~~g~~~v---i~~ 122 (255)
..++ +.++++||+|+ +++|++.++.+.. .|+ +|++++++.+.. +.+++.|.... .|-
T Consensus 54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dv 132 (422)
T 3s8m_A 54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDA 132 (422)
T ss_dssp TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred ccccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecC
Confidence 3455 46788999997 8999998888887 999 999998765421 34455664321 233
Q ss_pred CCCCch---HHHHHHhhcCCCccEEEecCCc
Q 025257 123 KDHDKP---IQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 123 ~~~~~~---~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
.+ ++. +.+.+.+..+|.+|+++++.|.
T Consensus 133 td-~~~v~~~v~~i~~~~~G~IDiLVNNAG~ 162 (422)
T 3s8m_A 133 FS-DAARAQVIELIKTEMGGQVDLVVYSLAS 162 (422)
T ss_dssp TS-HHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred CC-HHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence 33 122 3334444442579999998875
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.007 Score=49.29 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=62.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+.+|.|.|.|.+|...++.++..|. +|++.++++++.+.+.+.|.... ++.+.+. ..|+|+.++.
T Consensus 154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~--------~l~e~l~-----~aDvVi~~vp 219 (330)
T 2gcg_A 154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQAEFV--------STPELAA-----QSDFIVVACS 219 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTCEEC--------CHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCceeC--------CHHHHHh-----hCCEEEEeCC
Confidence 46799999999999999999999999 99999988776666666665321 1222232 3788887776
Q ss_pred cHH----HH-HHHHHHhccCCceEEEEcc
Q 025257 150 NVS----VM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~~----~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
... .+ ...+..++++ ..++.++.
T Consensus 220 ~~~~t~~~i~~~~~~~mk~g-ailIn~sr 247 (330)
T 2gcg_A 220 LTPATEGLCNKDFFQKMKET-AVFINISR 247 (330)
T ss_dssp CCTTTTTCBSHHHHHHSCTT-CEEEECSC
T ss_pred CChHHHHhhCHHHHhcCCCC-cEEEECCC
Confidence 421 12 3556677775 66665543
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0025 Score=49.88 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=49.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
++ +++|+|+|++|.+++..+...|+.+|+++.|++++.+.+.+ ++. ... .++.+.+. .+|+|++|+
T Consensus 108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~----~~~~~~~~-----~aDiVInat 174 (253)
T 3u62_A 108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSL----DQLDEVVK-----KAKSLFNTT 174 (253)
T ss_dssp CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEG----GGHHHHHH-----TCSEEEECS
T ss_pred CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCH----HHHHhhhc-----CCCEEEECC
Confidence 45 99999999999999999999998789999999887665532 221 111 33333333 589999988
Q ss_pred Cc
Q 025257 149 GN 150 (255)
Q Consensus 149 g~ 150 (255)
..
T Consensus 175 p~ 176 (253)
T 3u62_A 175 SV 176 (253)
T ss_dssp ST
T ss_pred CC
Confidence 53
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.012 Score=46.82 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=54.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|... . .+..+.+. ..|+|+-|+..+.
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~-~------~~~~~~~~-----~~Dvvi~~vp~~~ 68 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGEQV-V------SSPADVAE-----KADRIITMLPTSI 68 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTCEE-C------SSHHHHHH-----HCSEEEECCSSHH
T ss_pred eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCee-c------CCHHHHHh-----cCCEEEEeCCCHH
Confidence 57899999999999988888898 9999999999988887777532 1 22333333 3788888886554
Q ss_pred HHHHHHH
Q 025257 153 VMRAALE 159 (255)
Q Consensus 153 ~~~~~~~ 159 (255)
..+..+.
T Consensus 69 ~~~~v~~ 75 (296)
T 2gf2_A 69 NAIEAYS 75 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4565554
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0058 Score=49.91 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=56.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc----chHHHH---HhcCCcEE-eCCCCCCchHHHHHHhhcCCCcc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRA---KNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~----~~~~~~---~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d 142 (255)
.+|||+|+ |.+|..+++.+...|. +|+++++++ ++.+.+ +..++..+ .|..+ .+.+.+.+.+. ++|
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d-~~~l~~~~~~~---~~d 85 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHR-PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINE-QEAMEKILKEH---EID 85 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTC-HHHHHHHHHHT---TCC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCC-HHHHHHHHhhC---CCC
Confidence 57999998 9999999999998998 999999876 444433 34455543 23332 12333333321 699
Q ss_pred EEEecCCcHH--HHHHHHHHhcc
Q 025257 143 YSFECIGNVS--VMRAALECCHK 163 (255)
Q Consensus 143 ~v~d~~g~~~--~~~~~~~~l~~ 163 (255)
+||.+.+... ....+++.++.
T Consensus 86 ~Vi~~a~~~n~~~~~~l~~aa~~ 108 (346)
T 3i6i_A 86 IVVSTVGGESILDQIALVKAMKA 108 (346)
T ss_dssp EEEECCCGGGGGGHHHHHHHHHH
T ss_pred EEEECCchhhHHHHHHHHHHHHH
Confidence 9999988632 13445555554
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0041 Score=49.30 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=51.1
Q ss_pred CCCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCc--chHHHHHh-cCCcEE--eCCCCCCchHHHHHHhhcC--
Q 025257 69 EPGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDP--KKFDRAKN-FGVTEF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g--~vG~~a~~l~~~~g~~~v~~~~~~~--~~~~~~~~-~g~~~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
-+++++||+|+ | ++|.+.++.+...|+ +|+++++++ +..+.+.+ .+.-.. .|-.+ ++.+.+.+.+...
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 101 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVIS-DQEIKDLFVELGKVW 101 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTC-HHHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCC-HHHHHHHHHHHHHHc
Confidence 35689999985 4 499999999999999 999999887 44455433 332122 34333 1223322332211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 102 g~id~li~nAg~ 113 (280)
T 3nrc_A 102 DGLDAIVHSIAF 113 (280)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 379999998873
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0029 Score=49.52 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=50.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHh----cCCcE---EeCCCCCCchHHHHHHhhc--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AKN----FGVTE---FVNPKDHDKPIQQVLVDLT--D 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~~----~g~~~---vi~~~~~~~~~~~~i~~~~--~ 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|++++++.++.+. +++ .+... ..|-.+ ++.+.+.+.+.. -
T Consensus 13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 90 (265)
T 1h5q_A 13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDADL 90 (265)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCC-HHHHHHHHHHHHHhc
Confidence 4578999997 9999999999999999 99999986554332 222 23221 124333 122333333322 1
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 91 ~~id~li~~Ag~ 102 (265)
T 1h5q_A 91 GPISGLIANAGV 102 (265)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 369999998874
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0051 Score=48.97 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=56.9
Q ss_pred CCCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHH--HHHHhhcCCCccEE
Q 025257 68 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ--QVLVDLTDGGVDYS 144 (255)
Q Consensus 68 ~~~~~~vlI~G~g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~--~~i~~~~~~~~d~v 144 (255)
--.|.+++|.|.| .+|..+++++...|+ +|++..+.. .++. +.++ .+|+|
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T---------------------~~l~l~~~~~-----~ADIV 214 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGT---------------------STEDMIDYLR-----TADIV 214 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTS---------------------CHHHHHHHHH-----TCSEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCC---------------------CCchhhhhhc-----cCCEE
Confidence 3488999999985 589999999999999 888887522 2232 3333 48999
Q ss_pred EecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 145 FECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 145 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+.++|.+..+. -.+++++ ..++.+|..
T Consensus 215 I~Avg~p~~I~--~~~vk~G-avVIDvgi~ 241 (300)
T 4a26_A 215 IAAMGQPGYVK--GEWIKEG-AAVVDVGTT 241 (300)
T ss_dssp EECSCCTTCBC--GGGSCTT-CEEEECCCE
T ss_pred EECCCCCCCCc--HHhcCCC-cEEEEEecc
Confidence 99999876222 2457886 888888764
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0023 Score=50.08 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=50.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHH---cCCCeEEEEcCCcchHHHHH-hc-----CCcE---EeCCCCCCchHHHHHHhh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKA---AGASRVIGIDIDPKKFDRAK-NF-----GVTE---FVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~---~g~~~v~~~~~~~~~~~~~~-~~-----g~~~---vi~~~~~~~~~~~~i~~~ 136 (255)
+++++||+|+ |++|.+.++.+.. .|+ +|+++++++++.+.+. ++ +... ..|-.+ ++.+.+.+.+.
T Consensus 5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~ 82 (259)
T 1oaa_A 5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT-EAGVQRLLSAV 82 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS-HHHHHHHHHHH
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCC-HHHHHHHHHHH
Confidence 3578999997 9999999988877 899 9999999887765542 22 3221 124333 12333333333
Q ss_pred cC----CCcc--EEEecCC
Q 025257 137 TD----GGVD--YSFECIG 149 (255)
Q Consensus 137 ~~----~~~d--~v~d~~g 149 (255)
.. +.+| +++++.|
T Consensus 83 ~~~~~~g~~d~~~lvnnAg 101 (259)
T 1oaa_A 83 RELPRPEGLQRLLLINNAA 101 (259)
T ss_dssp HHSCCCTTCCEEEEEECCC
T ss_pred HhccccccCCccEEEECCc
Confidence 22 3577 9998876
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0023 Score=49.42 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=49.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHHH----hcCCcE--E-eCCCCCCchHHHHHHhhc--CC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRAK----NFGVTE--F-VNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~~~~~~~~~~~----~~g~~~--v-i~~~~~~~~~~~~i~~~~--~~ 139 (255)
++++||+|+ |++|...++.+...|+ +|+++ .+++++.+.+. +.+... + .|-.+ ++.+.+.+.+.. -+
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcC
Confidence 468999997 9999999999999999 99884 77776655432 234321 1 23333 122333333221 13
Q ss_pred CccEEEecCC
Q 025257 140 GVDYSFECIG 149 (255)
Q Consensus 140 ~~d~v~d~~g 149 (255)
++|+++++.|
T Consensus 79 ~id~li~~Ag 88 (244)
T 1edo_A 79 TIDVVVNNAG 88 (244)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999887
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.012 Score=48.45 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=66.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC----cch---------HHHHHhcCCcEEeCCCCCCchHHHHHHh
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID----PKK---------FDRAKNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~----~~~---------~~~~~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
-++.+|+|.|+|..|..+++++...|+++|++++++ .++ .+++++... .... .++.+.++
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~----~~~~--~~L~eav~- 262 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP----ERLS--GDLETALE- 262 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TCCC--SCHHHHHT-
T ss_pred CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc----cCch--hhHHHHHc-
Confidence 356899999999999999999999999889999987 444 333343321 0112 56777665
Q ss_pred hcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 136 LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++|+++-+++....-++.++.|+++ -.++.+...
T Consensus 263 ----~ADVlIG~Sap~l~t~emVk~Ma~~-pIIfalSNP 296 (388)
T 1vl6_A 263 ----GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANP 296 (388)
T ss_dssp ----TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSS
T ss_pred ----cCCEEEEeCCCCccCHHHHHhcCCC-CEEEEcCCC
Confidence 4799999888433246777888885 666666553
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0031 Score=49.00 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=50.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhcCCcEE---eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|+++++ ++++.+.+ ++.+.... .|-.+ ++.+.+.+.+...
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 80 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVAD-ADEVKAMIKEVVSQF 80 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 4578999997 9999999999999999 9988876 43444433 33443321 23333 1223222332211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 81 g~id~lv~nAg~ 92 (246)
T 3osu_A 81 GSLDVLVNNAGI 92 (246)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998884
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.012 Score=47.46 Aligned_cols=91 Identities=18% Similarity=0.251 Sum_probs=64.2
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCc-EEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+|.|+|.|.+|...++.++..|.. +|++.++++++.+.+++.|.. ......+ ++ .+ ..+|+|+.|+.
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~---~~--~~-----~~aDvVilavp 103 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA---KV--ED-----FSPDFVMLSSP 103 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTT---GG--GG-----GCCSEEEECSC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHH---HH--hh-----ccCCEEEEeCC
Confidence 6899999999999999999988864 799999999999999888863 2332211 10 11 15899999988
Q ss_pred cHH---HHHHHHHHhccCCceEEEEcc
Q 025257 150 NVS---VMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~~---~~~~~~~~l~~~~G~~v~~g~ 173 (255)
... .++.+...++++ ..++.++.
T Consensus 104 ~~~~~~vl~~l~~~l~~~-~iv~d~~S 129 (314)
T 3ggo_A 104 VRTFREIAKKLSYILSED-ATVTDQGS 129 (314)
T ss_dssp GGGHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred HHHHHHHHHHHhhccCCC-cEEEECCC
Confidence 654 233444556664 66666654
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.005 Score=48.25 Aligned_cols=79 Identities=24% Similarity=0.442 Sum_probs=49.9
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHHHh-cC-CcEE-eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK---KFDRAKN-FG-VTEF-VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~---~~~~~~~-~g-~~~v-i~~~~~~~~~~~~i~~~~~-- 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|++++++++ ..+.+.+ .+ ...+ .|-.+ ++.+.+.+.+...
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 84 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ-DEELDALFAGVKEAF 84 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4678999985 6999999988888999 9999998875 2333322 33 2222 24333 1223222332211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 85 g~iD~lv~~Ag~ 96 (261)
T 2wyu_A 85 GGLDYLVHAIAF 96 (261)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998873
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0071 Score=49.86 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=81.8
Q ss_pred CEEEEEcCChHHHHHHHHHHHc-CCCeEEEE-cCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAA-GASRVIGI-DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~-~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
-+|.|+|+|.+|...+..++.. ++ +++++ ++++++.+.+++.|+. ++ .++.+.+.+ ..+|+|+.|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~a~~~g~~-~~------~~~~~ll~~---~~~D~V~i~tp 74 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNL-EVHGVFDILAEKREAAAQKGLK-IY------ESYEAVLAD---EKVDAVLIATP 74 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTE-EEEEEECSSHHHHHHHHTTTCC-BC------SCHHHHHHC---TTCCEEEECSC
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHhcCCc-ee------CCHHHHhcC---CCCCEEEEcCC
Confidence 4789999999999888777766 67 77765 6677777777777764 22 344444442 26999999999
Q ss_pred cHHHHHHHHHHhccCCceEEEEccCCCCCccccCchh------hcc--CcEEEEeeeCCCCccCcHHHHHHHHHcCCCC
Q 025257 150 NVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ------LVT--GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK 220 (255)
Q Consensus 150 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (255)
.....+.+..++.. |+-|++... +..+... ..+ +..+.-.. +......++.+.+++++|.+.
T Consensus 75 ~~~h~~~~~~al~a--GkhVl~EKP-----~a~~~~ea~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~k~~i~~g~iG 144 (359)
T 3e18_A 75 NDSHKELAISALEA--GKHVVCEKP-----VTMTSEDLLAIMDVAKRVNKHFMVHQ--NRRWDEDFLIIKEMFEQKTIG 144 (359)
T ss_dssp GGGHHHHHHHHHHT--TCEEEEESS-----CCSSHHHHHHHHHHHHHHTCCEEEEC--GGGGCHHHHHHHHHHHHTTTS
T ss_pred cHHHHHHHHHHHHC--CCCEEeeCC-----CcCCHHHHHHHHHHHHHhCCeEEEEe--eeccCHHHHHHHHHHHcCCCC
Confidence 88778888888888 454555432 2222111 111 33332111 122224677888888888753
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0025 Score=51.84 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=49.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh------cCCcEE-eCCCCCCchHHHHHHhhcCCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KN------FGVTEF-VNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~------~g~~~v-i~~~~~~~~~~~~i~~~~~~~ 140 (255)
.+.+|||+|+ |.+|..+++.+...|+ +|++++++.++.+.. ++ .+...+ .|-.+ +..+.+.+.+ ++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~---~~ 78 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD-ERALARIFDA---HP 78 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTC-HHHHHHHHHH---SC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCC-HHHHHHHHhc---cC
Confidence 4568999997 9999999999999999 999999876543222 11 123222 23322 1222222322 27
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+|+++.+.
T Consensus 79 ~d~vih~A~~ 88 (341)
T 3enk_A 79 ITAAIHFAAL 88 (341)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECccc
Confidence 9999999874
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.009 Score=44.88 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=62.5
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-C------------------CcEE-eCCC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-G------------------VTEF-VNPK 123 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g------------------~~~v-i~~~ 123 (255)
....+.++.+||..|+|. |..+..+++. |+ +|++++.|++-.+.+++. + .+.+ -|..
T Consensus 16 ~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 92 (203)
T 1pjz_A 16 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF 92 (203)
T ss_dssp HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred HhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence 445677889999999875 7777788875 88 999999999988888542 1 1111 1222
Q ss_pred CCCchHHHHHHhhcCCCccEEEecCC-----c---HHHHHHHHHHhccCCceEEEE
Q 025257 124 DHDKPIQQVLVDLTDGGVDYSFECIG-----N---VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 124 ~~~~~~~~~i~~~~~~~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+ ..+.+ .+.||+|++... . ...++.+.+.|+++ |+++.+
T Consensus 93 ~--l~~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg-G~~~l~ 139 (203)
T 1pjz_A 93 A--LTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLI 139 (203)
T ss_dssp S--STHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEE
T ss_pred c--CCccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 1 11110 026999996322 1 12367888999997 984433
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.008 Score=45.92 Aligned_cols=100 Identities=16% Similarity=0.289 Sum_probs=65.5
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-cEEeCCCCCCchHHHHHHhhcC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGV-TEFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~i~~~~~ 138 (255)
....++++++||-.|+|..|..+..+++..+. +|++++.+++..+.+++ .+. -.++..+- .. +.....
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~--~~----~~~~~~ 121 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG--GI----IKGVVE 121 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS--CS----STTTCC
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc--hh----hhhccc
Confidence 34457899999999998558888888887677 99999999988777743 342 12222110 00 111112
Q ss_pred CCccEEEecCC----------------------c---HHHHHHHHHHhccCCceEEEE
Q 025257 139 GGVDYSFECIG----------------------N---VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 139 ~~~d~v~d~~g----------------------~---~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+.||+|+-... . ...++.+.+.|+++ |+++.+
T Consensus 122 ~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 178 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALY 178 (230)
T ss_dssp SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEE
T ss_pred CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEE
Confidence 37999984311 0 33477888889997 988875
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0043 Score=50.80 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=51.8
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHH-hc---CCcEE-eCCCCCCchHHHHHHhhcCCCc
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAK-NF---GVTEF-VNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~-~~---g~~~v-i~~~~~~~~~~~~i~~~~~~~~ 141 (255)
-++.+|||+|+ |.+|..+++.+... |..+|+++++++.+.+.+. ++ +...+ .|-.+ . +.+.+... ++
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d--~---~~l~~~~~-~~ 92 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD--L---ERLNYALE-GV 92 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC--H---HHHHHHTT-TC
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC--H---HHHHHHHh-cC
Confidence 35689999997 99999999888777 8658999999887766553 22 22222 23333 2 23333332 69
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+||++++.
T Consensus 93 D~Vih~Aa~ 101 (344)
T 2gn4_A 93 DICIHAAAL 101 (344)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0098 Score=47.34 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=51.5
Q ss_pred CCCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----CCcE-EeCCCCCCchHHHHHHhhcCCCc
Q 025257 69 EPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----GVTE-FVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 69 ~~~~~vlI~G-~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g~~~-vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
.+++++||+| +|++|.+++..+...|+ +|+++.+++++.+.+. ++ +... ..|..+ .+ .+.+... .+
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~--~~---~~~~~~~-~~ 189 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD--DA---SRAEAVK-GA 189 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS--HH---HHHHHTT-TC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC--HH---HHHHHHH-hC
Confidence 3678999999 59999999999999999 8999999887766542 22 3221 234332 22 2322222 48
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|++++++|.
T Consensus 190 DvlVn~ag~ 198 (287)
T 1lu9_A 190 HFVFTAGAI 198 (287)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCc
Confidence 999999973
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00075 Score=53.27 Aligned_cols=73 Identities=23% Similarity=0.254 Sum_probs=48.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCch-H---HHHHHhhcCCCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP-I---QQVLVDLTDGGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~-~---~~~i~~~~~~~~d~v 144 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++.++.+..... ..|-.+ .. . .+.+.+.. +++|++
T Consensus 27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~----~~Dv~~--~~~~~~~~~~~~~~~-g~iD~l 98 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAADLHL----PGDLRE--AAYADGLPGAVAAGL-GRLDIV 98 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCCSEEC----CCCTTS--HHHHHHHHHHHHHHH-SCCCEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHhhhcc----CcCCCC--HHHHHHHHHHHHHhc-CCCCEE
Confidence 4689999997 9999999999999999 999999876544322111 112222 22 2 22222222 379999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+++.|.
T Consensus 99 vnnAg~ 104 (266)
T 3uxy_A 99 VNNAGV 104 (266)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998884
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0029 Score=49.92 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=50.6
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhcCCcEE---eCCCCCCchHHHHHHhhcC-
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~~~~~~~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~~- 138 (255)
.+++++||+|+ |++|.+.++.+...|+ +|+++ .+++++.+.+ ++.+.... .|-.+ ++.+.+.+.+...
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGN-AADIAAMFSAVDRQ 101 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHh
Confidence 45679999997 9999999999999999 88776 6666655544 23343221 23333 1223222332211
Q ss_pred -CCccEEEecCC
Q 025257 139 -GGVDYSFECIG 149 (255)
Q Consensus 139 -~~~d~v~d~~g 149 (255)
+++|++++++|
T Consensus 102 ~g~id~li~nAg 113 (272)
T 4e3z_A 102 FGRLDGLVNNAG 113 (272)
T ss_dssp HSCCCEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 36999999887
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0053 Score=48.76 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=49.6
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHHHh-cC-CcEE-eCCCCCCchHHHHHHhhc--C
Q 025257 70 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK---KFDRAKN-FG-VTEF-VNPKDHDKPIQQVLVDLT--D 138 (255)
Q Consensus 70 ~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~---~~~~~~~-~g-~~~v-i~~~~~~~~~~~~i~~~~--~ 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++++ ..+.+.+ .+ ...+ .|-.+ ++.+.+.+.+.. -
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 97 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSL-DEDIKNLKKFLEENW 97 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4678999985 6999999999999999 9999998875 2223322 33 2222 34333 122322222221 1
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 98 g~iD~lv~~Ag 108 (285)
T 2p91_A 98 GSLDIIVHSIA 108 (285)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37999999887
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0038 Score=48.28 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=65.2
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhc--
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT-- 137 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~-- 137 (255)
....+..+||..|+|. |..+..+++.. +. +|++++.+++..+.+++ .|...-+.... .+..+.+....
T Consensus 66 ~~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~--gda~~~l~~l~~~ 141 (237)
T 3c3y_A 66 LKLVNAKKTIEVGVFT-GYSLLLTALSIPDDG-KITAIDFDREAYEIGLPFIRKAGVEHKINFIE--SDAMLALDNLLQG 141 (237)
T ss_dssp HHHTTCCEEEEECCTT-SHHHHHHHHHSCTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHS
T ss_pred HHhhCCCEEEEeCCCC-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHHHHhc
Confidence 3445678999999874 77888888876 45 99999999988777743 45421111111 22333333221
Q ss_pred ---CCCccEEEecCCc---HHHHHHHHHHhccCCceEEEEc
Q 025257 138 ---DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 138 ---~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.+.||+||-.... ...++.+.+.|++| |.++.-.
T Consensus 142 ~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG-G~lv~d~ 181 (237)
T 3c3y_A 142 QESEGSYDFGFVDADKPNYIKYHERLMKLVKVG-GIVAYDN 181 (237)
T ss_dssp TTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred cCCCCCcCEEEECCchHHHHHHHHHHHHhcCCC-eEEEEec
Confidence 2379999943332 33478888999996 8887643
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0025 Score=49.69 Aligned_cols=81 Identities=21% Similarity=0.204 Sum_probs=49.1
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHH----HHhcCCcE-E--eCCCCCCchHHHHHHhhc-
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDR----AKNFGVTE-F--VNPKDHDKPIQQVLVDLT- 137 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~-~~~~~~~~----~~~~g~~~-v--i~~~~~~~~~~~~i~~~~- 137 (255)
..+++++||+|+ |++|.+.++.+...|+ +|++++ ++.++.+. +++.+... . .|-.+ .+.+.+.+.+..
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGD-WDSTKQAFDKVKA 87 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCC-HHHHHHHHHHHHH
Confidence 456789999997 9999999999999999 998887 44443332 23344321 1 23332 122332233221
Q ss_pred -CCCccEEEecCCc
Q 025257 138 -DGGVDYSFECIGN 150 (255)
Q Consensus 138 -~~~~d~v~d~~g~ 150 (255)
.+++|+++++.|.
T Consensus 88 ~~g~id~lv~~Ag~ 101 (256)
T 3ezl_A 88 EVGEIDVLVNNAGI 101 (256)
T ss_dssp HTCCEEEEEECCCC
T ss_pred hcCCCCEEEECCCC
Confidence 1379999998883
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0011 Score=51.51 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=47.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHH-----HHhhcC--CCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQV-----LVDLTD--GGV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~-----i~~~~~--~~~ 141 (255)
.++++||+|+ |++|.+.++.+.. |. +|+++++++++.+.+.+......+. .++.+. +.+... +++
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~-----~D~~~~~~~~~~~~~~~~~~~i 76 (245)
T 3e9n_A 4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIE-----SDIVKEVLEEGGVDKLKNLDHV 76 (245)
T ss_dssp --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEE-----CCHHHHHHTSSSCGGGTTCSCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCccee-----cccchHHHHHHHHHHHHhcCCC
Confidence 3678999997 9999998877765 88 9999999988887776643222221 112111 111111 269
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++++.|.
T Consensus 77 d~lv~~Ag~ 85 (245)
T 3e9n_A 77 DTLVHAAAV 85 (245)
T ss_dssp SEEEECC--
T ss_pred CEEEECCCc
Confidence 999999885
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.005 Score=48.93 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=51.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC---cEEeCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV---TEFVNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~---~~vi~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
.+++++|+|+|++|.+++..+...|+.+|+++.|++++.+.+ ++++. -.+.+..+ .. ..+|+|+
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~-----------l~-~~aDiII 192 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQ-----------LK-QSYDVII 192 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG-----------CC-SCEEEEE
T ss_pred cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHH-----------hc-CCCCEEE
Confidence 678999999999999999988889976999999998886665 33332 12222211 11 2699999
Q ss_pred ecCCcHH
Q 025257 146 ECIGNVS 152 (255)
Q Consensus 146 d~~g~~~ 152 (255)
+|++...
T Consensus 193 naTp~gm 199 (281)
T 3o8q_A 193 NSTSASL 199 (281)
T ss_dssp ECSCCCC
T ss_pred EcCcCCC
Confidence 9987643
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0095 Score=48.07 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=62.9
Q ss_pred CEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhc-CC---c--EEeCCCCCCchHHHHHHhhcCCCccEE
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNF-GV---T--EFVNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~-g~---~--~vi~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
.+||++|+|. |..+..+++.. +. +|++++.+++-.+.+++. +. . .++. .+..+.+.+...+.||+|
T Consensus 91 ~rVLdIG~G~-G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~-----~Da~~~l~~~~~~~fDvI 163 (317)
T 3gjy_A 91 LRITHLGGGA-CTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRAPRVKIRV-----DDARMVAESFTPASRDVI 163 (317)
T ss_dssp CEEEEESCGG-GHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCTTTEEEEE-----SCHHHHHHTCCTTCEEEE
T ss_pred CEEEEEECCc-CHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCCCceEEEE-----CcHHHHHhhccCCCCCEE
Confidence 3899999874 77788888865 67 999999999988888653 21 1 1221 334444444333479999
Q ss_pred Ee-cCCc---------HHHHHHHHHHhccCCceEEEEc
Q 025257 145 FE-CIGN---------VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 145 ~d-~~g~---------~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+- .... ...++.+.+.|+++ |.++..-
T Consensus 164 i~D~~~~~~~~~~L~t~efl~~~~r~Lkpg-Gvlv~~~ 200 (317)
T 3gjy_A 164 IRDVFAGAITPQNFTTVEFFEHCHRGLAPG-GLYVANC 200 (317)
T ss_dssp EECCSTTSCCCGGGSBHHHHHHHHHHEEEE-EEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEEe
Confidence 84 3221 33478899999997 9877654
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0031 Score=55.85 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=47.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC---------CcchHHHH----HhcCCcEEeCCCCCCchHHHHHHh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI---------DPKKFDRA----KNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~---------~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
.++++||+|+ +++|.+.++.+...|+ +|+++++ +.++.+.+ ++.+...+.|..+ ..+..+.+.+
T Consensus 18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d-~~~~~~~~~~ 95 (613)
T 3oml_A 18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNS-VIDGAKVIET 95 (613)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCEEECCCC-GGGHHHHHC-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCC-HHHHHHHHHH
Confidence 5688999997 8999999999999999 9999876 44443332 3455555566554 1333333443
Q ss_pred hcC--CCccEEEecCCc
Q 025257 136 LTD--GGVDYSFECIGN 150 (255)
Q Consensus 136 ~~~--~~~d~v~d~~g~ 150 (255)
... +.+|+++++.|.
T Consensus 96 ~~~~~g~iDiLVnnAGi 112 (613)
T 3oml_A 96 AIKAFGRVDILVNNAGI 112 (613)
T ss_dssp ---------CEECCCCC
T ss_pred HHHHCCCCcEEEECCCC
Confidence 332 269999999884
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.016 Score=47.78 Aligned_cols=91 Identities=12% Similarity=0.204 Sum_probs=62.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+... .++.+.+.+. ..+|+|+-|+..
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~-------~s~~e~~~~a--~~~DvVi~~vp~ 91 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAGA-------RSIEEFCAKL--VKPRVVWLMVPA 91 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBCC-------SSHHHHHHHS--CSSCEEEECSCG
T ss_pred CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEEe-------CCHHHHHhcC--CCCCEEEEeCCH
Confidence 3689999999999999999999998 99999999999998887775321 3343444332 135888888776
Q ss_pred HHHHHHHHH----HhccCCceEEEEcc
Q 025257 151 VSVMRAALE----CCHKGWGTSVIVGV 173 (255)
Q Consensus 151 ~~~~~~~~~----~l~~~~G~~v~~g~ 173 (255)
.. .+..++ .++++ ..++..+.
T Consensus 92 ~~-v~~vl~~l~~~l~~g-~iiId~st 116 (358)
T 4e21_A 92 AV-VDSMLQRMTPLLAAN-DIVIDGGN 116 (358)
T ss_dssp GG-HHHHHHHHGGGCCTT-CEEEECSS
T ss_pred HH-HHHHHHHHHhhCCCC-CEEEeCCC
Confidence 53 443333 34443 45554443
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0086 Score=50.29 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=71.0
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCc
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
+.....++++.+||-.|+|. |..+..+++ .|. +|++++.+++..+.+++.+.......-. ....+.+. ...+.|
T Consensus 99 l~~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~--~~~~~~l~-~~~~~f 172 (416)
T 4e2x_A 99 FLATELTGPDPFIVEIGCND-GIMLRTIQE-AGV-RHLGFEPSSGVAAKAREKGIRVRTDFFE--KATADDVR-RTEGPA 172 (416)
T ss_dssp HHHTTTCSSSCEEEEETCTT-TTTHHHHHH-TTC-EEEEECCCHHHHHHHHTTTCCEECSCCS--HHHHHHHH-HHHCCE
T ss_pred HHHHhCCCCCCEEEEecCCC-CHHHHHHHH-cCC-cEEEECCCHHHHHHHHHcCCCcceeeec--hhhHhhcc-cCCCCE
Confidence 34555677899999999864 555555555 588 9999999999999998887665443322 33333332 222479
Q ss_pred cEEEecCC------cHHHHHHHHHHhccCCceEEEE
Q 025257 142 DYSFECIG------NVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 142 d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
|+|+-... ....++.+.+.|+++ |+++..
T Consensus 173 D~I~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~ 207 (416)
T 4e2x_A 173 NVIYAANTLCHIPYVQSVLEGVDALLAPD-GVFVFE 207 (416)
T ss_dssp EEEEEESCGGGCTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EEEEECChHHhcCCHHHHHHHHHHHcCCC-eEEEEE
Confidence 99985432 233478899999997 988865
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0036 Score=47.77 Aligned_cols=97 Identities=21% Similarity=0.184 Sum_probs=65.3
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cC-----Cc--EEeCCCCCCchHHHHHH
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FG-----VT--EFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g-----~~--~vi~~~~~~~~~~~~i~ 134 (255)
.++++++||..|+|+ |..+..+++..|. .+|++++.++...+.+++ .| .+ .++.. +..+.
T Consensus 74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-----d~~~~-- 145 (226)
T 1i1n_A 74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-----DGRMG-- 145 (226)
T ss_dssp TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES-----CGGGC--
T ss_pred hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC-----CcccC--
Confidence 378999999999875 8888888888763 299999999988877743 22 11 11111 11000
Q ss_pred hhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEc
Q 025257 135 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
....+.||+|+....-...++.+.+.|+++ |+++..-
T Consensus 146 ~~~~~~fD~i~~~~~~~~~~~~~~~~Lkpg-G~lv~~~ 182 (226)
T 1i1n_A 146 YAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILPV 182 (226)
T ss_dssp CGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred cccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEE
Confidence 011237999986655555468889999997 9887753
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0075 Score=51.84 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=54.9
Q ss_pred CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch---H----HHHHhcCCcEE---eCCCCCCchHHHHHHh
Q 025257 67 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK---F----DRAKNFGVTEF---VNPKDHDKPIQQVLVD 135 (255)
Q Consensus 67 ~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~---~----~~~~~~g~~~v---i~~~~~~~~~~~~i~~ 135 (255)
.++++.++||+|+ |++|...++.+...|+.+|+.+++++.. . +.+++.|.... .|-.+ ...+.+.+.+
T Consensus 222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d-~~~v~~~~~~ 300 (486)
T 2fr1_A 222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD-RESVRELLGG 300 (486)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHT
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCC-HHHHHHHHHH
Confidence 3678899999997 9999999988888898559999887642 1 22344564321 23333 1234444444
Q ss_pred hcCC-CccEEEecCCc
Q 025257 136 LTDG-GVDYSFECIGN 150 (255)
Q Consensus 136 ~~~~-~~d~v~d~~g~ 150 (255)
.... .+|.||++.|.
T Consensus 301 i~~~g~ld~VIh~AG~ 316 (486)
T 2fr1_A 301 IGDDVPLSAVFHAAAT 316 (486)
T ss_dssp SCTTSCEEEEEECCCC
T ss_pred HHhcCCCcEEEECCcc
Confidence 4222 78999999883
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.007 Score=47.87 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=62.9
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
.+|||+|+|.+|..+++.+...|. +|+++++++++.+.+...+...+. |..+ .+ -.++|+|+++.+.
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d--~~---------~~~~d~vi~~a~~ 73 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPGEE--PS---------LDGVTHLLISTAP 73 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEESSSSC--CC---------CTTCCEEEECCCC
T ss_pred CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEEecccc--cc---------cCCCCEEEECCCc
Confidence 589999999999999999988999 999999999888877776665443 3222 11 1379999998874
Q ss_pred H----HHHHHHHHHhcc---CCceEEEEcc
Q 025257 151 V----SVMRAALECCHK---GWGTSVIVGV 173 (255)
Q Consensus 151 ~----~~~~~~~~~l~~---~~G~~v~~g~ 173 (255)
. ......++.++. +-.+++.++.
T Consensus 74 ~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss 103 (286)
T 3ius_A 74 DSGGDPVLAALGDQIAARAAQFRWVGYLST 103 (286)
T ss_dssp BTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred cccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence 2 113444444433 1157777754
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.004 Score=48.91 Aligned_cols=74 Identities=15% Similarity=0.084 Sum_probs=48.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchH---HHHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPI---QQVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~---~~~i~~~~~~~~d~v~ 145 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+++++++++. ..+.+ ....|-.+ ++.. .+.+.+.. |++|+++
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~--~~~~Dv~~-~~~v~~~~~~~~~~~-G~iDilV 83 (261)
T 4h15_A 10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPEG-LPEEL--FVEADLTT-KEGCAIVAEATRQRL-GGVDVIV 83 (261)
T ss_dssp TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCTT-SCTTT--EEECCTTS-HHHHHHHHHHHHHHT-SSCSEEE
T ss_pred CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchhC-CCcEE--EEEcCCCC-HHHHHHHHHHHHHHc-CCCCEEE
Confidence 6789999997 8999999999999999 999999875421 00111 11123332 1222 22333322 3799999
Q ss_pred ecCC
Q 025257 146 ECIG 149 (255)
Q Consensus 146 d~~g 149 (255)
++.|
T Consensus 84 nnAG 87 (261)
T 4h15_A 84 HMLG 87 (261)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9877
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0023 Score=50.59 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=60.9
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
+|||+|+ |.+|...++.+... |. +|+++++++++.+.+...+...+ .|..+ . +.+.+... ++|+|+++.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d--~---~~~~~~~~-~~d~vi~~a 73 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYGD--E---AALTSALQ-GVEKLLLIS 73 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTCEEEECCTTC--H---HHHHHHTT-TCSEEEECC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCCeEEEcCCCC--H---HHHHHHHh-CCCEEEEeC
Confidence 4899998 99999999888877 88 99999998877666655555433 23332 2 23333332 589999988
Q ss_pred CcH-----HHHHHHHHHhccC-CceEEEEccC
Q 025257 149 GNV-----SVMRAALECCHKG-WGTSVIVGVA 174 (255)
Q Consensus 149 g~~-----~~~~~~~~~l~~~-~G~~v~~g~~ 174 (255)
+.. .....+++.+... -++++.++..
T Consensus 74 ~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~ 105 (286)
T 2zcu_A 74 SSEVGQRAPQHRNVINAAKAAGVKFIAYTSLL 105 (286)
T ss_dssp --------CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 742 1134445544432 1478887664
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0096 Score=45.27 Aligned_cols=74 Identities=16% Similarity=0.079 Sum_probs=55.0
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+|+|.|+|.+|..+++.+...|. +|+++++++++.+.+. ..|...+. |..+ . +.+++..-..+|+++-+++.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~~i~gd~~~--~---~~l~~a~i~~ad~vi~~~~~ 75 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKATIIHGDGSH--K---EILRDAEVSKNDVVVILTPR 75 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSEEEESCTTS--H---HHHHHHTCCTTCEEEECCSC
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCeEEEcCCCC--H---HHHHhcCcccCCEEEEecCC
Confidence 58999999999999999999999 9999999999888764 46665443 2222 2 23333322279999999988
Q ss_pred HH
Q 025257 151 VS 152 (255)
Q Consensus 151 ~~ 152 (255)
..
T Consensus 76 d~ 77 (218)
T 3l4b_C 76 DE 77 (218)
T ss_dssp HH
T ss_pred cH
Confidence 66
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0034 Score=50.97 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=50.9
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-----C--CcEE--eCCCCCCchHHHHHHhhcC
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-----G--VTEF--VNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-----g--~~~v--i~~~~~~~~~~~~i~~~~~ 138 (255)
.++.+|||+|+ |.+|..+++.+...|. +|++++++.++.+.+.+. + ...+ .|-.+ .+ .+.+...
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~---~~~~~~~ 82 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK--QG---AYDEVIK 82 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS--TT---TTTTTTT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC--hH---HHHHHHc
Confidence 45689999998 9999999998888999 999999987766554321 2 2222 23222 11 2222222
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
++|+|+++++.
T Consensus 83 -~~d~vih~A~~ 93 (342)
T 1y1p_A 83 -GAAGVAHIASV 93 (342)
T ss_dssp -TCSEEEECCCC
T ss_pred -CCCEEEEeCCC
Confidence 69999998874
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0032 Score=48.17 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCC------CeEEEEcCCcchHHHHHhc----C-----Cc--EEeCCCCCCchH
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA------SRVIGIDIDPKKFDRAKNF----G-----VT--EFVNPKDHDKPI 129 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~------~~v~~~~~~~~~~~~~~~~----g-----~~--~vi~~~~~~~~~ 129 (255)
.++++++||..|+|. |..+..+++..+. .+|++++.+++..+.+++. + .. .++.. +.
T Consensus 81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-----d~ 154 (227)
T 1r18_A 81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG-----DG 154 (227)
T ss_dssp TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES-----CG
T ss_pred hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC-----Cc
Confidence 578999999999876 8888888887652 3999999999887777542 1 11 12211 11
Q ss_pred HHHHHhhcC-CCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 130 QQVLVDLTD-GGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 130 ~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.+ .+.. +.||+|+.........+.+.+.|+++ |+++..
T Consensus 155 ~~---~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lvi~ 193 (227)
T 1r18_A 155 RK---GYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVP 193 (227)
T ss_dssp GG---CCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEE
T ss_pred cc---CCCcCCCccEEEECCchHHHHHHHHHHhcCC-CEEEEE
Confidence 11 1112 37999997766555468889999997 987765
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.005 Score=50.23 Aligned_cols=69 Identities=28% Similarity=0.328 Sum_probs=46.4
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.++.+|||+|+ |.+|..+++.+...|. +|+++++++.+ .+...+ .|..+ .+. +.+... ++|+|+.
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~------~~~~~~~~Dl~d--~~~---~~~~~~-~~d~vih 83 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPSG------TGGEEVVGSLED--GQA---LSDAIM-GVSAVLH 83 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCCS------SCCSEEESCTTC--HHH---HHHHHT-TCSEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCCC------CCccEEecCcCC--HHH---HHHHHh-CCCEEEE
Confidence 45678999998 9999999999999999 99999988765 333333 23333 322 222222 6999999
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
+.+.
T Consensus 84 ~A~~ 87 (347)
T 4id9_A 84 LGAF 87 (347)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8763
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0032 Score=49.13 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=50.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHH-hcCCcE---EeCCCCCCchHHHHHHhhcC--CCc
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAK-NFGVTE---FVNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~-~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
++++||+|+ +++|.+.++.+...| + +|+.+++++++.+.+. +++... ..|-.+ +....+.+.+... +++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i 79 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGDRFFYVVGDITE-DSVLKQLVNAAVKGHGKI 79 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGGGEEEEESCTTS-HHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHhcCCc
Confidence 578999997 899999887776664 6 8999999888776663 344221 124333 1223222322211 379
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++++.|.
T Consensus 80 d~lvnnAg~ 88 (254)
T 3kzv_A 80 DSLVANAGV 88 (254)
T ss_dssp CEEEEECCC
T ss_pred cEEEECCcc
Confidence 999998884
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.02 Score=45.28 Aligned_cols=89 Identities=20% Similarity=0.308 Sum_probs=61.0
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCc-EEeCCCCCCchHHHHHHhhcCC-CccEEEecCC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIG 149 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g 149 (255)
+|.|+|+|.+|.+.++.++..|.. +|++.++++++.+.+++.|.. ..... +.+.+ . .+|+|+.|+.
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~------~~~~~-----~~~aDvVilavp 71 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTS------IAKVE-----DFSPDFVMLSSP 71 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESC------GGGGG-----GTCCSEEEECSC
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCC------HHHHh-----cCCCCEEEEcCC
Confidence 689999999999999999888752 699999999998888888863 22211 11111 2 4899999998
Q ss_pred cHHH---HHHHHHHhccCCceEEEEcc
Q 025257 150 NVSV---MRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~~~---~~~~~~~l~~~~G~~v~~g~ 173 (255)
.... +......++++ ..++.++.
T Consensus 72 ~~~~~~v~~~l~~~l~~~-~iv~~~~~ 97 (281)
T 2g5c_A 72 VRTFREIAKKLSYILSED-ATVTDQGS 97 (281)
T ss_dssp HHHHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred HHHHHHHHHHHHhhCCCC-cEEEECCC
Confidence 7652 22333445664 56665544
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0094 Score=47.81 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=59.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
.+|||+|+ |.+|..+++.+...|. +|+++++++.+.+ ++ +...+.- + -. .+.+.+... ++|+|+++++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~--~~~~~~~--D--l~-~~~~~~~~~-~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA-IN--DYEYRVS--D--YT-LEDLINQLN-DVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC--------CCEEEEC--C--CC-HHHHHHHTT-TCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc-CC--ceEEEEc--c--cc-HHHHHHhhc-CCCEEEEcccc
Confidence 58999997 9999999999999999 9999999855554 43 4433321 1 33 455555544 79999998874
Q ss_pred HH-------------HHHHHHHHhccC-CceEEEEcc
Q 025257 151 VS-------------VMRAALECCHKG-WGTSVIVGV 173 (255)
Q Consensus 151 ~~-------------~~~~~~~~l~~~-~G~~v~~g~ 173 (255)
.. ....+++.+... -.+++.++.
T Consensus 73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS 109 (311)
T 3m2p_A 73 RGSQGKISEFHDNEILTQNLYDACYENNISNIVYAST 109 (311)
T ss_dssp CCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 21 123445555442 136877764
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0076 Score=49.13 Aligned_cols=98 Identities=21% Similarity=0.254 Sum_probs=64.8
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc------CC--c--EEeCCCCCCchHHHHHHhh
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF------GV--T--EFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~------g~--~--~vi~~~~~~~~~~~~i~~~ 136 (255)
...+..+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. |. . .++. .+..+.+...
T Consensus 117 ~~~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~-----~D~~~~l~~~ 190 (334)
T 1xj5_A 117 SIPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI-----GDGVAFLKNA 190 (334)
T ss_dssp TSSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE-----SCHHHHHHTS
T ss_pred hCCCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE-----CCHHHHHHhc
Confidence 345668999999864 66777788766444999999999888877542 11 1 1221 3343444433
Q ss_pred cCCCccEEEe-cC---C------cHHHHHHHHHHhccCCceEEEE
Q 025257 137 TDGGVDYSFE-CI---G------NVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 137 ~~~~~d~v~d-~~---g------~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
..+.||+|+- .. + ....++.+.+.|+++ |.++.-
T Consensus 191 ~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~ 234 (334)
T 1xj5_A 191 AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQ 234 (334)
T ss_dssp CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEE
T ss_pred cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence 2347999984 33 1 234588899999997 998875
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0042 Score=47.98 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=50.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCC------eEEEEcCCcchHHHHH-h---cCCc--EE-eCCCCCCchHHHHHHhh
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGAS------RVIGIDIDPKKFDRAK-N---FGVT--EF-VNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~------~v~~~~~~~~~~~~~~-~---~g~~--~v-i~~~~~~~~~~~~i~~~ 136 (255)
++++||+|+ |++|...++.+...|+. +|+++++++++.+.+. + .+.. .+ .|-.+ +..+.+.+.+.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~ 80 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHI 80 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCC-HHHHHHHHHHH
Confidence 468999997 99999999888888874 7899998877665542 2 2422 11 24333 12233223322
Q ss_pred c--CCCccEEEecCC
Q 025257 137 T--DGGVDYSFECIG 149 (255)
Q Consensus 137 ~--~~~~d~v~d~~g 149 (255)
. .+++|+++++.|
T Consensus 81 ~~~~g~id~li~~Ag 95 (244)
T 2bd0_A 81 VERYGHIDCLVNNAG 95 (244)
T ss_dssp HHHTSCCSEEEECCC
T ss_pred HHhCCCCCEEEEcCC
Confidence 1 137999999887
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0095 Score=47.47 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=66.2
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHHhhcCC
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
.+.++.+||-.|+|. |..+..+++..|+ +|++++.++...+.+++ .|.. .++...- .++ ....+
T Consensus 79 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~~~~ 149 (297)
T 2o57_A 79 VLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF--LEI-----PCEDN 149 (297)
T ss_dssp CCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT--TSC-----SSCTT
T ss_pred CCCCCCEEEEeCCCC-CHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc--ccC-----CCCCC
Confidence 788999999999874 7888888888898 99999999987777643 2321 1211110 111 01123
Q ss_pred CccEEEecCCc------HHHHHHHHHHhccCCceEEEEcc
Q 025257 140 GVDYSFECIGN------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 140 ~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.||+|+....- ...+..+.+.|+++ |+++....
T Consensus 150 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 188 (297)
T 2o57_A 150 SYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP 188 (297)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CEeEEEecchhhhcCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence 79999854321 34488999999997 99887754
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.013 Score=48.02 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=60.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHhc-CCcEE-eC-CCCCCchHHHHHHhhcCCCccEE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF--DRAKNF-GVTEF-VN-PKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~--~~~~~~-g~~~v-i~-~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
+.+|||+|+ |.+|..+++.+...|. +|+++++++++. +.+.+. ++..+ .| ..+ .+ .+.+... ++|.|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d--~~---~l~~~~~-~~d~V 77 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNN--VP---LMDTLFE-GAHLA 77 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSHHHHHHHTSTTEEEEESCCTTC--HH---HHHHHHT-TCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCChhhHHHHhhcCCcEEEECCccCC--HH---HHHHHHh-cCCEE
Confidence 467999998 9999999988888998 999999887764 334332 33332 23 332 22 2222222 58999
Q ss_pred EecCCcH-----HHHHHHHHHhccCC--ceEEEEccC
Q 025257 145 FECIGNV-----SVMRAALECCHKGW--GTSVIVGVA 174 (255)
Q Consensus 145 ~d~~g~~-----~~~~~~~~~l~~~~--G~~v~~g~~ 174 (255)
|.+.+.. .....+++.+...+ ++++.++..
T Consensus 78 i~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~ 114 (352)
T 1xgk_A 78 FINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP 114 (352)
T ss_dssp EECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence 9766542 11244455544421 488888764
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0023 Score=50.32 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=68.9
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~ 134 (255)
+.....++++.+||-.|+|. |..+..+++..|. +|++++.+++..+.+++ .|.. .++...- .++
T Consensus 53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~----- 123 (273)
T 3bus_A 53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADA--MDL----- 123 (273)
T ss_dssp HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSC-----
T ss_pred HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc--ccC-----
Confidence 45667788999999999875 7888888888888 99999999988777754 2321 1221111 110
Q ss_pred hhcCCCccEEEecC-----C-cHHHHHHHHHHhccCCceEEEEcc
Q 025257 135 DLTDGGVDYSFECI-----G-NVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 135 ~~~~~~~d~v~d~~-----g-~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
....+.||+|+-.. . ....++.+.+.|+++ |+++....
T Consensus 124 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 167 (273)
T 3bus_A 124 PFEDASFDAVWALESLHHMPDRGRALREMARVLRPG-GTVAIADF 167 (273)
T ss_dssp CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE-EEEEEEEE
T ss_pred CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence 11123799998422 1 234478888999997 98887653
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0088 Score=51.48 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=53.5
Q ss_pred CCCC--CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-------HHHHHhcCCcEE---eCCCCCCchHHHHHH
Q 025257 68 VEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-------FDRAKNFGVTEF---VNPKDHDKPIQQVLV 134 (255)
Q Consensus 68 ~~~~--~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-------~~~~~~~g~~~v---i~~~~~~~~~~~~i~ 134 (255)
++++ .++||+|+ |++|...++.+...|+.+|+.+.++... .+.+++.|.... .|-.+ ...+.+.+.
T Consensus 234 ~~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~ 312 (496)
T 3mje_A 234 KRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAAD-REALAALLA 312 (496)
T ss_dssp CCCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHH
Confidence 3455 89999987 9999999988888998678888876321 223345665432 23333 133444444
Q ss_pred hhcCC-CccEEEecCCc
Q 025257 135 DLTDG-GVDYSFECIGN 150 (255)
Q Consensus 135 ~~~~~-~~d~v~d~~g~ 150 (255)
+.... ++|.++++.|.
T Consensus 313 ~i~~~g~ld~vVh~AGv 329 (496)
T 3mje_A 313 ELPEDAPLTAVFHSAGV 329 (496)
T ss_dssp TCCTTSCEEEEEECCCC
T ss_pred HHHHhCCCeEEEECCcc
Confidence 44333 79999999884
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0058 Score=48.08 Aligned_cols=78 Identities=15% Similarity=0.322 Sum_probs=51.0
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHH-HhcCC--cEE-eCCCCCCchHHH---HHHhhcC
Q 025257 70 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRA-KNFGV--TEF-VNPKDHDKPIQQ---VLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~~-~~~g~--~~v-i~~~~~~~~~~~---~i~~~~~ 138 (255)
+++++||+|+ |++|.+.++.+...|+ +|+++++++++ .+.+ ++++. ..+ .|-.+ ++.+.+ .+.+..+
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 83 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN-EEHLASLAGRVTEAIG 83 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC-HHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 4688999984 7999999999999999 99999988765 2444 34442 222 34333 122222 2222222
Q ss_pred --CCccEEEecCC
Q 025257 139 --GGVDYSFECIG 149 (255)
Q Consensus 139 --~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 84 ~~~~iD~lv~nAg 96 (269)
T 2h7i_A 84 AGNKLDGVVHSIG 96 (269)
T ss_dssp TTCCEEEEEECCC
T ss_pred CCCCceEEEECCc
Confidence 16999999887
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0046 Score=50.66 Aligned_cols=74 Identities=19% Similarity=0.172 Sum_probs=49.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----CCcEE-eCCCCCCchHHHHHHhhcCC-Ccc
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----GVTEF-VNPKDHDKPIQQVLVDLTDG-GVD 142 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g~~~v-i~~~~~~~~~~~~i~~~~~~-~~d 142 (255)
+.+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+. .+ +...+ .|..+ .+ .+.+...+ .+|
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~---~~~~~~~~~~~d 82 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD--QN---KLLESIREFQPE 82 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC--HH---HHHHHHHHHCCS
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcccchhhHhhccCCceEEEEccccC--HH---HHHHHHHhcCCC
Confidence 578999997 9999999999988999 9999998775543322 11 22222 23332 22 22222223 589
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+||++.+.
T Consensus 83 ~vih~A~~ 90 (357)
T 1rkx_A 83 IVFHMAAQ 90 (357)
T ss_dssp EEEECCSC
T ss_pred EEEECCCC
Confidence 99999883
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0066 Score=47.43 Aligned_cols=98 Identities=15% Similarity=0.018 Sum_probs=61.5
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCC--------------------cEEeCCCCC
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGV--------------------TEFVNPKDH 125 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~--------------------~~vi~~~~~ 125 (255)
..+++.+||..|+|. |..+..|++ .|+ +|++++.|+.-.+.+++ .+. ..+ ....
T Consensus 65 ~~~~~~~vLD~GCG~-G~~~~~La~-~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~- 139 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGK-AIEMKWFAD-RGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSI-SLYC- 139 (252)
T ss_dssp TTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE-EEEE-
T ss_pred cCCCCCeEEEeCCCC-cHHHHHHHH-CCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCce-EEEE-
Confidence 346789999999875 777777776 499 99999999998888853 321 011 0000
Q ss_pred CchHHHHHHhhcCCCccEEEecCC-----c---HHHHHHHHHHhccCCceEEEEc
Q 025257 126 DKPIQQVLVDLTDGGVDYSFECIG-----N---VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 126 ~~~~~~~i~~~~~~~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.++. .+.....+.||+|++... . ...+..+.+.|+++ |+++++.
T Consensus 140 -~D~~-~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG-G~l~l~~ 191 (252)
T 2gb4_A 140 -CSIF-DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE-FQYLVAV 191 (252)
T ss_dssp -SCTT-TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred -Cccc-cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC-eEEEEEE
Confidence 1110 011111147999997432 1 22477888999997 9986543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0012 Score=52.01 Aligned_cols=94 Identities=17% Similarity=0.297 Sum_probs=63.2
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHc---CCCeEEEEcCCcchHHHHHh----cCCc-E--EeCCCCCCchHHHHHHhhc
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAA---GASRVIGIDIDPKKFDRAKN----FGVT-E--FVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~---g~~~v~~~~~~~~~~~~~~~----~g~~-~--vi~~~~~~~~~~~~i~~~~ 137 (255)
++||.+||-.|+|. |..+..+++.. |+ +|++++.+++-.+.+++ .+.. . ++.. + +.++.
T Consensus 68 ~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~-----D----~~~~~ 136 (261)
T 4gek_A 68 VQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG-----D----IRDIA 136 (261)
T ss_dssp CCTTCEEEEETCTT-THHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-----C----TTTCC
T ss_pred CCCCCEEEEEeCCC-CHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEeec-----c----ccccc
Confidence 78999999999874 77777888764 67 99999999988777754 3322 1 1211 1 11222
Q ss_pred CCCccEEEecCC-----c---HHHHHHHHHHhccCCceEEEEcc
Q 025257 138 DGGVDYSFECIG-----N---VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 ~~~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.+|+|+-... . ...++.+.+.|++| |+++....
T Consensus 137 ~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG-G~lii~e~ 179 (261)
T 4gek_A 137 IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSEK 179 (261)
T ss_dssp CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred ccccccceeeeeeeecCchhHhHHHHHHHHHcCCC-cEEEEEec
Confidence 236888874322 1 12478899999997 99987644
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0037 Score=50.93 Aligned_cols=89 Identities=16% Similarity=0.253 Sum_probs=61.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|.|.|.|.+|...++.++..|. +|++.++++.+.+...+.|+.. .++.+.+. ..|+|+-++.
T Consensus 144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~--------~~l~ell~-----~aDvV~l~~P 209 (330)
T 4e5n_A 144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGLRQ--------VACSELFA-----SSDFILLALP 209 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTEEE--------CCHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCcee--------CCHHHHHh-----hCCEEEEcCC
Confidence 57899999999999999999999999 9999999876666666666532 12333333 2677776654
Q ss_pred cH-H---HH-HHHHHHhccCCceEEEEcc
Q 025257 150 NV-S---VM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~-~---~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
.. . .+ ...+..++++ ..++.++-
T Consensus 210 ~t~~t~~li~~~~l~~mk~g-ailIN~ar 237 (330)
T 4e5n_A 210 LNADTLHLVNAELLALVRPG-ALLVNPCR 237 (330)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred CCHHHHHHhCHHHHhhCCCC-cEEEECCC
Confidence 21 1 11 3566677775 66666654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.014 Score=46.09 Aligned_cols=104 Identities=14% Similarity=0.238 Sum_probs=65.1
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHHhh
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~~~ 136 (255)
....++++++||-.|+|+ |..+..++... +..+|++++.++++.+.+++ .|... ++..+. .++......
T Consensus 77 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~--~~~~~~~~~- 152 (274)
T 3ajd_A 77 IVLNPREDDFILDMCAAP-GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADM--RKYKDYLLK- 152 (274)
T ss_dssp HHHCCCTTCEEEETTCTT-CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCH--HHHHHHHHH-
T ss_pred HHhCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCCh--Hhcchhhhh-
Confidence 445688999999888764 66667777765 42499999999998887743 45432 222111 122111110
Q ss_pred cCCCccEEE-e--cCCc---------------------HHHHHHHHHHhccCCceEEEEc
Q 025257 137 TDGGVDYSF-E--CIGN---------------------VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 137 ~~~~~d~v~-d--~~g~---------------------~~~~~~~~~~l~~~~G~~v~~g 172 (255)
..+.||+|+ | |.|. ...++.+++.++++ |+++...
T Consensus 153 ~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~st 211 (274)
T 3ajd_A 153 NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD-GELVYST 211 (274)
T ss_dssp TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEEE
Confidence 123799998 4 3331 33477888899997 9887754
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.012 Score=46.37 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=52.6
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
.+..+.+++|+|+|+.|.+++..+...|+.+|+++.|+.++.+.+ ++++.+ +.+ + .. + ..+|+|+
T Consensus 115 ~~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~~~--~--~~----~-----~~~DivI 180 (271)
T 1npy_A 115 HLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-YIN--S--LE----N-----QQADILV 180 (271)
T ss_dssp TCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-EES--C--CT----T-----CCCSEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-cch--h--hh----c-----ccCCEEE
Confidence 344668999999999999999999999987899999998876655 555642 111 1 10 0 2699999
Q ss_pred ecCCcHH
Q 025257 146 ECIGNVS 152 (255)
Q Consensus 146 d~~g~~~ 152 (255)
+|+....
T Consensus 181 naTp~gm 187 (271)
T 1npy_A 181 NVTSIGM 187 (271)
T ss_dssp ECSSTTC
T ss_pred ECCCCCc
Confidence 9988543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0013 Score=52.08 Aligned_cols=71 Identities=7% Similarity=0.034 Sum_probs=49.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+++++|+|+|++|.+++..+...|+++|+++.|+.++.+.+.+. . ... .+. .+.+.. ..+|+|++|++
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~-~-~~~-------~~~-~~~~~~-~~aDiVInaTp 184 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLN-I-NKI-------NLS-HAESHL-DEFDIIINTTP 184 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSC-C-EEE-------CHH-HHHHTG-GGCSEEEECCC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHh-c-ccc-------cHh-hHHHHh-cCCCEEEECcc
Confidence 578999999999999999999999987899999998876554321 1 111 121 222221 15899999987
Q ss_pred cH
Q 025257 150 NV 151 (255)
Q Consensus 150 ~~ 151 (255)
..
T Consensus 185 ~G 186 (277)
T 3don_A 185 AG 186 (277)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0056 Score=48.40 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=59.6
Q ss_pred hhcC-CCCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCc
Q 025257 64 NTAK-VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 64 ~~~~-~~~~~~vlI~G~g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
+... --.|.+++|.|.| .+|.-+++++...|+ +|++..+. . .++.+.+++ +
T Consensus 151 ~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t--~~L~~~~~~-----A 203 (288)
T 1b0a_A 151 ERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRF-------------------T--KNLRHHVEN-----A 203 (288)
T ss_dssp HHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSS-------------------C--SCHHHHHHH-----C
T ss_pred HHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCC-------------------c--hhHHHHhcc-----C
Confidence 4444 3478999999986 689999999999999 88887532 1 445555553 8
Q ss_pred cEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 142 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
|+|+.++|.+. + -.-++++++ ..++.+|..
T Consensus 204 DIVI~Avg~p~-l-I~~~~vk~G-avVIDVgi~ 233 (288)
T 1b0a_A 204 DLLIVAVGKPG-F-IPGDWIKEG-AIVIDVGIN 233 (288)
T ss_dssp SEEEECSCCTT-C-BCTTTSCTT-CEEEECCCE
T ss_pred CEEEECCCCcC-c-CCHHHcCCC-cEEEEccCC
Confidence 99999999886 2 222346886 888888764
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0064 Score=49.98 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=31.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHH--cCCCeEEEEcCCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKA--AGASRVIGIDIDPK 106 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~--~g~~~v~~~~~~~~ 106 (255)
.+.+|||+|+ |.+|..+++.+.. .|. +|+++++++.
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~ 47 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRS 47 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCc
Confidence 4579999997 9999999988888 899 9999998654
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.016 Score=47.03 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=75.1
Q ss_pred EEEEEcCChHHHHH-HHHHHHcCCCeEEE-EcCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 73 IVAVFGLGTVGLAV-AEGAKAAGASRVIG-IDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 73 ~vlI~G~g~vG~~a-~~l~~~~g~~~v~~-~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+|.|.|+|.+|... +..++..+. ++++ .++++++.+.+ +++|...++ .++.+.+.+ ..+|+|+.|+.
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~-~~vav~d~~~~~~~~~~~~~g~~~~~------~~~~~~l~~---~~~D~V~i~tp 71 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGG-EVVSMMSTSAERGAAYATENGIGKSV------TSVEELVGD---PDVDAVYVSTT 71 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTC-EEEEEECSCHHHHHHHHHHTTCSCCB------SCHHHHHTC---TTCCEEEECSC
T ss_pred eEEEEcccHHHHHhhhHHhhcCCC-eEEEEECCCHHHHHHHHHHcCCCccc------CCHHHHhcC---CCCCEEEEeCC
Confidence 58899999999876 544444777 7765 46676666554 566754232 334333332 26999999999
Q ss_pred cHHHHHHHHHHhccCCceEEEEccCCCCCccccCch---h---hcc--CcEEEEeeeCCCCccCcHHHHHHHHHcCCC
Q 025257 150 NVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF---Q---LVT--GRVWKGTAFGGFKSRSQVPWLVDKYMKKEI 219 (255)
Q Consensus 150 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~---~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 219 (255)
.....+.+..++.. |+-+.+... +..+.. . ..+ +..+.-. ........++.+.+++++|.+
T Consensus 72 ~~~h~~~~~~al~~--Gk~v~~ekP-----~~~~~~~~~~l~~~a~~~g~~~~~~--~~~r~~p~~~~~~~~i~~g~i 140 (332)
T 2glx_A 72 NELHREQTLAAIRA--GKHVLCEKP-----LAMTLEDAREMVVAAREAGVVLGTN--HHLRNAAAHRAMRDAIAEGRI 140 (332)
T ss_dssp GGGHHHHHHHHHHT--TCEEEECSS-----SCSSHHHHHHHHHHHHHHTCCEEEC--CCGGGSHHHHHHHHHHHTTTT
T ss_pred hhHhHHHHHHHHHC--CCeEEEeCC-----CcCCHHHHHHHHHHHHHcCCEEEEe--ehhhcCHHHHHHHHHHHcCCC
Confidence 87767788888887 454555432 122211 1 111 3333211 112222457788888888765
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0066 Score=48.68 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=57.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-----chHHHHH---hcCCcEE-eCCCCCCchHHHHHHhhcCCCc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-----KKFDRAK---NFGVTEF-VNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-----~~~~~~~---~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~ 141 (255)
.+|||+|+ |.+|..+++.+...|. +|+++++++ ++.+.++ ..++..+ .|..+ . +.+.+... ++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~---~~l~~~~~-~~ 77 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD--H---QRLVDALK-QV 77 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSC--H---HHHHHHHT-TC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCC--H---HHHHHHHh-CC
Confidence 57999998 9999999999988998 999999873 3443332 3355433 23332 2 23333322 59
Q ss_pred cEEEecCCcH------HHHHHHHHHhccCC--ceEE
Q 025257 142 DYSFECIGNV------SVMRAALECCHKGW--GTSV 169 (255)
Q Consensus 142 d~v~d~~g~~------~~~~~~~~~l~~~~--G~~v 169 (255)
|.||.+++.. .....+++.+...+ ++++
T Consensus 78 d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v 113 (313)
T 1qyd_A 78 DVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL 113 (313)
T ss_dssp SEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred CEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence 9999988743 11344555555431 3666
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0078 Score=47.52 Aligned_cols=78 Identities=9% Similarity=0.241 Sum_probs=50.0
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHHHh-cC-CcEE-eCCCCCCchHHHHHHhhc--C
Q 025257 70 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK---KFDRAKN-FG-VTEF-VNPKDHDKPIQQVLVDLT--D 138 (255)
Q Consensus 70 ~~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~---~~~~~~~-~g-~~~v-i~~~~~~~~~~~~i~~~~--~ 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++++ ..+.+.+ .+ ...+ .|-.+ ++.+.+.+.+.. -
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK-EEHFKSLYNSVKKDL 82 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4678999985 6999999999999999 9999998875 3333322 34 2222 34333 122322232221 1
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 83 g~id~lv~nAg 93 (275)
T 2pd4_A 83 GSLDFIVHSVA 93 (275)
T ss_dssp SCEEEEEECCC
T ss_pred CCCCEEEECCc
Confidence 37999999887
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.019 Score=50.69 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=63.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-c-hHHHHHhcCCcEEeCCCCC---CchHHHHHHhhcCCCccE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-K-KFDRAKNFGVTEFVNPKDH---DKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-~-~~~~~~~~g~~~vi~~~~~---~~~~~~~i~~~~~~~~d~ 143 (255)
.++.+||+|+ +++|.+.++.+...|+ +|++.++.. + -.+.+++.|...+....+. ...+.+.+.+.. |.+|+
T Consensus 321 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~-G~iDi 398 (604)
T 2et6_A 321 KDKVVLITGAGAGLGKEYAKWFAKYGA-KVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKY-GTIDI 398 (604)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHH-SCCCE
T ss_pred CCCeEEEECcchHHHHHHHHHHHHCCC-EEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhc-CCCCE
Confidence 4678999997 8999999999999999 999987532 1 2233445554433322220 012233333322 37999
Q ss_pred EEecCCcH----------H---------------HHHHHHHHhc-cCCceEEEEccC
Q 025257 144 SFECIGNV----------S---------------VMRAALECCH-KGWGTSVIVGVA 174 (255)
Q Consensus 144 v~d~~g~~----------~---------------~~~~~~~~l~-~~~G~~v~~g~~ 174 (255)
++++.|.. . ..+.++..+. .++|+++.+++.
T Consensus 399 LVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ 455 (604)
T 2et6_A 399 LVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITST 455 (604)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCh
Confidence 99998831 1 1345556663 223899998763
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0075 Score=51.39 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH---HHHhcCCcEE-eCCCCCCchHHH---HHHhhcCCCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD---RAKNFGVTEF-VNPKDHDKPIQQ---VLVDLTDGGV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~---~~~~~g~~~v-i~~~~~~~~~~~---~i~~~~~~~~ 141 (255)
+++++||+|+ |++|.+.++.+...|+ +|+.+++++...+ ...+.+...+ .|-.+ .....+ .+.+..++.+
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd-~~~v~~~~~~~~~~~g~~i 289 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGAAEDLKRVADKVGGTALTLDVTA-DDAVDKITAHVTEHHGGKV 289 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGGHHHHHHHHHHHTCEEEECCTTS-TTHHHHHHHHHHHHSTTCC
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEecCC-HHHHHHHHHHHHHHcCCCc
Confidence 5679999987 9999999988888999 9999987643322 2244555433 33333 233333 3333333259
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++++.|.
T Consensus 290 d~lV~nAGv 298 (454)
T 3u0b_A 290 DILVNNAGI 298 (454)
T ss_dssp SEEEECCCC
T ss_pred eEEEECCcc
Confidence 999999884
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0071 Score=48.65 Aligned_cols=99 Identities=14% Similarity=0.071 Sum_probs=64.2
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC--------Cc--EEeCCCCCCchHHHHHHhhc
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG--------VT--EFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g--------~~--~vi~~~~~~~~~~~~i~~~~ 137 (255)
..++.+||+.|+|. |..+..+++..+..+|++++.+++-.+.+++.- .. .++. .+..+.+....
T Consensus 93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~-----~D~~~~~~~~~ 166 (304)
T 3bwc_A 93 HPKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV-----GDGLAFVRQTP 166 (304)
T ss_dssp SSSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----SCHHHHHHSSC
T ss_pred CCCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE-----CcHHHHHHhcc
Confidence 45678999999864 667777777654449999999998888776421 11 1221 33333333222
Q ss_pred CCCccEEEecCCc----------HHHHHHHHHHhccCCceEEEEcc
Q 025257 138 DGGVDYSFECIGN----------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 ~~~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.||+|+-.... ...++.+.+.|+++ |.++....
T Consensus 167 ~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~~ 211 (304)
T 3bwc_A 167 DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD-GICCNQGE 211 (304)
T ss_dssp TTCEEEEEEECC---------CCHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred CCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence 3479999842211 23478889999997 99887643
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0041 Score=49.44 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-----CC---------c--EEeCCCCCCchHHHH
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-----GV---------T--EFVNPKDHDKPIQQV 132 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-----g~---------~--~vi~~~~~~~~~~~~ 132 (255)
.++.+||+.|+|. |..+..+++. +..+|++++.+++-.+.+++. +. . .++. .+..+.
T Consensus 74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~-----~D~~~~ 146 (281)
T 1mjf_A 74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-----GDGFEF 146 (281)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-----SCHHHH
T ss_pred CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE-----CchHHH
Confidence 4568999999864 6677777777 655999999999888887642 11 1 1121 223333
Q ss_pred HHhhcCCCccEEE-ecCC---------cHHHHHHHHHHhccCCceEEEE
Q 025257 133 LVDLTDGGVDYSF-ECIG---------NVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 133 i~~~~~~~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+.. .+.||+|+ |... ....++.+.+.|+++ |.++..
T Consensus 147 l~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~ 192 (281)
T 1mjf_A 147 IKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQ 192 (281)
T ss_dssp HHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEE
T ss_pred hcc--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEE
Confidence 333 34799998 4432 133478889999997 988775
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0081 Score=48.01 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=49.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc------chHHHH---HhcCCcEE-eCCCCCCchHHHHHHhhcCC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP------KKFDRA---KNFGVTEF-VNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~------~~~~~~---~~~g~~~v-i~~~~~~~~~~~~i~~~~~~ 139 (255)
..+|+|+|+ |.+|..+++.+...|. +|++++++. ++.+.+ ...|+..+ .|..+ ++.+.+.++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d-~~~l~~~~~----- 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDD-HASLVEAVK----- 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTC-HHHHHHHHH-----
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCC-HHHHHHHHc-----
Confidence 357999998 9999999999998998 999999874 233333 23455433 23332 122322222
Q ss_pred CccEEEecCCcH
Q 025257 140 GVDYSFECIGNV 151 (255)
Q Consensus 140 ~~d~v~d~~g~~ 151 (255)
++|+||.+++..
T Consensus 77 ~~d~vi~~a~~~ 88 (308)
T 1qyc_A 77 NVDVVISTVGSL 88 (308)
T ss_dssp TCSEEEECCCGG
T ss_pred CCCEEEECCcch
Confidence 599999998853
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.004 Score=48.80 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=49.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHh----cCCc--E-EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRAKN----FGVT--E-FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~~~~~----~g~~--~-vi~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|++++++.+ ..+.+++ .+.. . ..|-.+ ++.+.+.+.+...
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 83 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTK-KEDLHKIVEEAMSHF 83 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHh
Confidence 3578999997 9999999999999999 9999866543 3333332 2221 1 124333 1223333333221
Q ss_pred CCccEEEecCC
Q 025257 139 GGVDYSFECIG 149 (255)
Q Consensus 139 ~~~d~v~d~~g 149 (255)
+++|+++++.|
T Consensus 84 g~id~lv~~Ag 94 (264)
T 3i4f_A 84 GKIDFLINNAG 94 (264)
T ss_dssp SCCCEEECCCC
T ss_pred CCCCEEEECCc
Confidence 27999999998
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0072 Score=47.00 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=67.6
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcC--CcEEeCCCCCCchHHHHHHhhcC
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFG--VTEFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g--~~~vi~~~~~~~~~~~~i~~~~~ 138 (255)
+.....+.++.+||-.|+|. |..+..+++.. +. +|++++.+++..+.+++.. ...+...- .++ . ..
T Consensus 25 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~~----~--~~ 93 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGP-GNSTELLTDRYGVN-VITGIDSDDDMLEKAADRLPNTNFGKADL---ATW----K--PA 93 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTT-THHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHSTTSEEEECCT---TTC----C--CS
T ss_pred HHHhcCCCCCCEEEEecCcC-CHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhCCCcEEEECCh---hhc----C--cc
Confidence 45666778889999999874 77777888776 66 9999999999888886642 22222111 111 0 12
Q ss_pred CCccEEEecCC------cHHHHHHHHHHhccCCceEEEEc
Q 025257 139 GGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 139 ~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+.||+|+.... ....+..+.+.|+++ |+++...
T Consensus 94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~ 132 (259)
T 2p35_A 94 QKADLLYANAVFQWVPDHLAVLSQLMDQLESG-GVLAVQM 132 (259)
T ss_dssp SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCC-eEEEEEe
Confidence 37999986442 233477888899997 9887764
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0084 Score=48.92 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=49.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch----HHHHHhc-------CCcEE-eCCCCCCchHHHHHHhh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK----FDRAKNF-------GVTEF-VNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~----~~~~~~~-------g~~~v-i~~~~~~~~~~~~i~~~ 136 (255)
.+.+|||+|+ |.+|..+++.+...|. +|+++++++.+ .+.++.. +...+ .|..+ . +.+.+.
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~---~~~~~~ 97 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRD--L---TTCEQV 97 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTC--H---HHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCC--H---HHHHHH
Confidence 3579999998 9999999999999999 99999986542 2223322 23322 23332 2 233333
Q ss_pred cCCCccEEEecCCc
Q 025257 137 TDGGVDYSFECIGN 150 (255)
Q Consensus 137 ~~~~~d~v~d~~g~ 150 (255)
.. ++|+||++++.
T Consensus 98 ~~-~~d~Vih~A~~ 110 (351)
T 3ruf_A 98 MK-GVDHVLHQAAL 110 (351)
T ss_dssp TT-TCSEEEECCCC
T ss_pred hc-CCCEEEECCcc
Confidence 33 69999999884
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0019 Score=49.48 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=66.2
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC--CcEEeCCCCCCchHHHHHHhhc-CCCccEE
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG--VTEFVNPKDHDKPIQQVLVDLT-DGGVDYS 144 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g--~~~vi~~~~~~~~~~~~i~~~~-~~~~d~v 144 (255)
++++.+||-.|+|. |..+..+++. |. +|++++.++...+.+++.. ...+...-. ..+ ... .+.||+|
T Consensus 46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~--~~~-----~~~~~~~fD~v 115 (226)
T 3m33_A 46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNGK--GEL-----PAGLGAPFGLI 115 (226)
T ss_dssp CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCSC--SSC-----CTTCCCCEEEE
T ss_pred CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcchh--hcc-----CCcCCCCEEEE
Confidence 46889999999875 6777777776 88 9999999999888886653 222211110 000 111 2379999
Q ss_pred EecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 145 FECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 145 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+........+..+.+.|+++ |+++..+.
T Consensus 116 ~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 143 (226)
T 3m33_A 116 VSRRGPTSVILRLPELAAPD-AHFLYVGP 143 (226)
T ss_dssp EEESCCSGGGGGHHHHEEEE-EEEEEEES
T ss_pred EeCCCHHHHHHHHHHHcCCC-cEEEEeCC
Confidence 97766666688999999997 99985544
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.01 Score=47.37 Aligned_cols=44 Identities=30% Similarity=0.361 Sum_probs=36.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~ 113 (255)
.++.+||-.|+|. |..+..+++..+..+|++++.++.-.+.+++
T Consensus 45 ~~~~~VLDiGCG~-G~~~~~la~~~~~~~v~gvDis~~~i~~A~~ 88 (292)
T 3g07_A 45 FRGRDVLDLGCNV-GHLTLSIACKWGPSRMVGLDIDSRLIHSARQ 88 (292)
T ss_dssp TTTSEEEEESCTT-CHHHHHHHHHTCCSEEEEEESCHHHHHHHHH
T ss_pred cCCCcEEEeCCCC-CHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3678999999875 7888889998764499999999988877765
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0012 Score=53.29 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhcCC--cEE--eC-CCCCCchHHHHHHhhcCCCc
Q 025257 69 EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKF-DRAKNFGV--TEF--VN-PKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 69 ~~~~~vlI~G~g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~-~~~~~~g~--~~v--i~-~~~~~~~~~~~i~~~~~~~~ 141 (255)
-.+.+++|.|+| .+|..+++++...|+ +|++..++..+. ++..+++. ... +. +.. .++.+.++ .+
T Consensus 175 l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~--~~L~e~l~-----~A 246 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSE--DLLKKCSL-----DS 246 (320)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCCCCEEEEEEECCH--HHHHHHHH-----HC
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhhcccccccccccH--hHHHHHhc-----cC
Confidence 368899999997 579999999999999 999888764321 12222332 111 00 111 34555555 48
Q ss_pred cEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 142 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
|+|+.++|.+. +--.-.+++++ ..++.+|..
T Consensus 247 DIVIsAtg~p~-~vI~~e~vk~G-avVIDVgi~ 277 (320)
T 1edz_A 247 DVVITGVPSEN-YKFPTEYIKEG-AVCINFACT 277 (320)
T ss_dssp SEEEECCCCTT-CCBCTTTSCTT-EEEEECSSS
T ss_pred CEEEECCCCCc-ceeCHHHcCCC-eEEEEcCCC
Confidence 99999999876 21122346885 788888774
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.013 Score=49.81 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=69.0
Q ss_pred hcCCCCCCEEEEEcCChHHHHHHHHHHHc-CC--CeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCC
Q 025257 65 TAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GA--SRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 65 ~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~--~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~ 140 (255)
.-++....+|+|+|+|+||..++.++... +. ..|++++..+.+.+..+..|.... ..-.. .+..+.+..+..++
T Consensus 7 ~~~~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vda--dnv~~~l~aLl~~~ 84 (480)
T 2ph5_A 7 TKKILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITP--QNYLEVIGSTLEEN 84 (480)
T ss_dssp TTCBCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCT--TTHHHHTGGGCCTT
T ss_pred cceecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccc--hhHHHHHHHHhcCC
Confidence 34556667899999999999999777654 44 268888877666666666675433 22222 55555565554444
Q ss_pred ccEEEecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 141 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
|+|++++-....+..+-.|+..+ -.++....
T Consensus 85 -DvVIN~s~~~~~l~Im~acleaG-v~YlDTa~ 115 (480)
T 2ph5_A 85 -DFLIDVSIGISSLALIILCNQKG-ALYINAAT 115 (480)
T ss_dssp -CEEEECCSSSCHHHHHHHHHHHT-CEEEESSC
T ss_pred -CEEEECCccccCHHHHHHHHHcC-CCEEECCC
Confidence 99999776555455566667775 66666654
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0086 Score=48.23 Aligned_cols=91 Identities=10% Similarity=0.095 Sum_probs=57.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc------chHHHH---HhcCCcEE-eCCCCCCchHHHHHHhhcCCC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP------KKFDRA---KNFGVTEF-VNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~------~~~~~~---~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~ 140 (255)
.+|+|+|+ |.+|..+++.+...|. +|+++++++ ++.+.+ ...++..+ .|..+ . +.+.+... +
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d--~---~~l~~a~~-~ 77 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSFSH-PTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEE--H---EKMVSVLK-Q 77 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTC--H---HHHHHHHT-T
T ss_pred cEEEEEcCCchhHHHHHHHHHhCCC-cEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCC--H---HHHHHHHc-C
Confidence 57999998 9999999998888998 999999875 233333 23455443 34333 2 23333332 5
Q ss_pred ccEEEecCCcHH--HHHHHHHHhccCC--ceEE
Q 025257 141 VDYSFECIGNVS--VMRAALECCHKGW--GTSV 169 (255)
Q Consensus 141 ~d~v~d~~g~~~--~~~~~~~~l~~~~--G~~v 169 (255)
+|+||.+++... ....+++.+...+ ++++
T Consensus 78 ~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 78 VDIVISALPFPMISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp CSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred CCEEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence 999999988531 1344555554421 3666
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.025 Score=46.16 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=55.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+.+|.|+|.|.+|.+.++.++..|. +|++.++++++ .+.+++.|... . +..+.+. ..|+|+-|+.
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~~~-~-------~~~e~~~-----~aDvVilavp 81 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGLKV-A-------DVKTAVA-----AADVVMILTP 81 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTCEE-E-------CHHHHHH-----TCSEEEECSC
T ss_pred CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCCEE-c-------cHHHHHh-----cCCEEEEeCC
Confidence 3579999999999999999999998 99999988766 67777788642 2 1222332 4899999988
Q ss_pred cHHHHHHHHH
Q 025257 150 NVSVMRAALE 159 (255)
Q Consensus 150 ~~~~~~~~~~ 159 (255)
... ....+.
T Consensus 82 ~~~-~~~v~~ 90 (338)
T 1np3_A 82 DEF-QGRLYK 90 (338)
T ss_dssp HHH-HHHHHH
T ss_pred cHH-HHHHHH
Confidence 766 455554
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.019 Score=41.49 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=62.6
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcC-CCcc
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTD-GGVD 142 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~-~~~d 142 (255)
.++++++||..|+|. |..+..+++..| . ++++++.++ ..+. -....+ .|..+ .+..+.+.+... +.||
T Consensus 19 ~~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~-~v~~~D~~~-~~~~---~~~~~~~~d~~~--~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAP-GGWSQYVVTQIGGKG-RIIACDLLP-MDPI---VGVDFLQGDFRD--ELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CCCTTCEEEEESCTT-CHHHHHHHHHHCTTC-EEEEEESSC-CCCC---TTEEEEESCTTS--HHHHHHHHHHHTTCCEE
T ss_pred CCCCCCeEEEeCCCC-CHHHHHHHHHhCCCC-eEEEEECcc-cccc---CcEEEEEccccc--chhhhhhhccCCCCcee
Confidence 378899999999976 888888888864 5 999999876 3221 111211 12222 222233333233 3799
Q ss_pred EEEe-----cCCc------------HHHHHHHHHHhccCCceEEEEcc
Q 025257 143 YSFE-----CIGN------------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 143 ~v~d-----~~g~------------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+|+. ..+. ...++.+.+.++++ |+++....
T Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 137 (180)
T 1ej0_A 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKVF 137 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 9996 2332 24478888999997 99887654
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.011 Score=47.10 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=53.1
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
.+|.|+|+|.+|...+..+...|. +|++.+ ++++.+.+.+.|... . .+..+.+. .+|+|+.|+..+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~-~~~~~~~~~~~g~~~---~----~~~~~~~~-----~~D~vi~~vp~~ 69 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT-IGPVADELLSLGAVN---V----ETARQVTE-----FADIIFIMVPDT 69 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTC-EEEECC-SSCCCHHHHTTTCBC---C----SSHHHHHH-----TCSEEEECCSSH
T ss_pred CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc-CHHHHHHHHHcCCcc---c----CCHHHHHh-----cCCEEEEECCCH
Confidence 378999999999999988888898 999888 888888877666431 1 22333332 478888888766
Q ss_pred HHHHHHHH
Q 025257 152 SVMRAALE 159 (255)
Q Consensus 152 ~~~~~~~~ 159 (255)
..++..+.
T Consensus 70 ~~~~~v~~ 77 (295)
T 1yb4_A 70 PQVEDVLF 77 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 54555554
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.01 Score=47.75 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=57.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHH---HhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRA---KNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~~~---~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
.+|||+|+ |.+|..+++.+...|. +|+++++++. +.+.+ ...|+..+ .|..+ . +.+.+... ++|+||
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d--~---~~l~~a~~-~~d~vi 84 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDE--H---EKLVELMK-KVDVVI 84 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTTCSCHHHHHHHHHTTCEEEECCTTC--H---HHHHHHHT-TCSEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCCCchhhHHHHhhcCCCEEEEecCCC--H---HHHHHHHc-CCCEEE
Confidence 47999998 9999999999998998 9999998874 43333 34565543 24333 2 23333322 599999
Q ss_pred ecCCcHH--HHHHHHHHhccC--CceEE
Q 025257 146 ECIGNVS--VMRAALECCHKG--WGTSV 169 (255)
Q Consensus 146 d~~g~~~--~~~~~~~~l~~~--~G~~v 169 (255)
.+++... ....+++.+... -++++
T Consensus 85 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v 112 (318)
T 2r6j_A 85 SALAFPQILDQFKILEAIKVAGNIKRFL 112 (318)
T ss_dssp ECCCGGGSTTHHHHHHHHHHHCCCCEEE
T ss_pred ECCchhhhHHHHHHHHHHHhcCCCCEEE
Confidence 9987532 133444444432 13665
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.001 Score=51.85 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=67.5
Q ss_pred hcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHHhhc
Q 025257 65 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 65 ~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~~~~ 137 (255)
...++++.+||-.|+|. |..+..+++..+. +|++++.++...+.+++ .|.. .++...- .++ ...
T Consensus 41 l~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~~ 111 (257)
T 3f4k_A 41 INELTDDAKIADIGCGT-GGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM--DNL-----PFQ 111 (257)
T ss_dssp SCCCCTTCEEEEETCTT-SHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSC-----SSC
T ss_pred HhcCCCCCeEEEeCCCC-CHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh--hhC-----CCC
Confidence 34678899999999985 8889999998887 99999999988777643 3422 1221110 111 011
Q ss_pred CCCccEEEe-----cCCcHHHHHHHHHHhccCCceEEEEc
Q 025257 138 DGGVDYSFE-----CIGNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 138 ~~~~d~v~d-----~~g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.+.||+|+- ..+....++.+.+.|+++ |+++...
T Consensus 112 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~ 150 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNIGFERGMNEWSKYLKKG-GFIAVSE 150 (257)
T ss_dssp TTCEEEEEEESCSCCCCHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred CCCEEEEEecChHhhcCHHHHHHHHHHHcCCC-cEEEEEE
Confidence 237999973 233345588899999997 9988775
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.007 Score=47.62 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=49.2
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH----HhcCCc--EE-eCCCCCCchHHHHHHhhcC-
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRA----KNFGVT--EF-VNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~-~~~~~~~~~----~~~g~~--~v-i~~~~~~~~~~~~i~~~~~- 138 (255)
.+++++||+|+ |++|.+.++.+...|+ +|++++ ++.++.+.. ++.+.. .+ .|-.+ +....+.+.+...
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVAD-FESCERCAEKVLAD 100 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHH
Confidence 35678999997 9999999999999999 999988 444433332 223322 11 34333 1222222222221
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 101 ~g~id~li~nAg~ 113 (269)
T 3gk3_A 101 FGKVDVLINNAGI 113 (269)
T ss_dssp HSCCSEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 269999998873
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0071 Score=52.52 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=53.0
Q ss_pred CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCc-------------ch----HHHHHhcCCcEE---eCCCC
Q 025257 67 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDP-------------KK----FDRAKNFGVTEF---VNPKD 124 (255)
Q Consensus 67 ~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~-~~~~-------------~~----~~~~~~~g~~~v---i~~~~ 124 (255)
.++++.++||+|+ |++|...++.+...|+.+++.+ .+++ ++ .+.+++.|.... .|-.+
T Consensus 247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd 326 (525)
T 3qp9_A 247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD 326 (525)
T ss_dssp SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence 4678899999987 9999999988888899447777 7763 22 222344565322 23333
Q ss_pred CCchHHHHHHhhcC-CCccEEEecCCc
Q 025257 125 HDKPIQQVLVDLTD-GGVDYSFECIGN 150 (255)
Q Consensus 125 ~~~~~~~~i~~~~~-~~~d~v~d~~g~ 150 (255)
...+.+.+.+... +.+|.|+++.|.
T Consensus 327 -~~~v~~~~~~i~~~g~id~vVh~AGv 352 (525)
T 3qp9_A 327 -AEAAARLLAGVSDAHPLSAVLHLPPT 352 (525)
T ss_dssp -HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred -HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence 1334444444432 279999999884
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0043 Score=49.97 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=47.5
Q ss_pred CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEE
Q 025257 67 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 67 ~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
..++..+|||+|+ |.+|..+++.+...|. +|+++++++.+ +. ++...+ .|..+ +..+.+.+.. +.+|+|
T Consensus 8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~-~~---l~~~~~~~Dl~d-~~~~~~~~~~---~~~d~v 78 (321)
T 2pk3_A 8 HHHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNNEA-KL---PNVEMISLDIMD-SQRVKKVISD---IKPDYI 78 (321)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCTTC-CC---TTEEEEECCTTC-HHHHHHHHHH---HCCSEE
T ss_pred cccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCcc-cc---ceeeEEECCCCC-HHHHHHHHHh---cCCCEE
Confidence 3456789999998 9999999999988999 99999987654 21 233322 23332 1222222322 269999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+++++.
T Consensus 79 ih~A~~ 84 (321)
T 2pk3_A 79 FHLAAK 84 (321)
T ss_dssp EECCSC
T ss_pred EEcCcc
Confidence 999874
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0073 Score=46.43 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=47.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE-EeCCCCCCchHHHHHHhhc-CCCccEEEec
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLT-DGGVDYSFEC 147 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~i~~~~-~~~~d~v~d~ 147 (255)
++++||+|+ |++|...++.+...|+ +|++++++++ . .+. .. ..|-.+ ++.+.+.+.+.. .+++|+++++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~-~---~~~--~~~~~D~~~-~~~~~~~~~~~~~~~~~d~li~~ 73 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE-G---EDL--IYVEGDVTR-EEDVRRAVARAQEEAPLFAVVSA 73 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC-S---SSS--EEEECCTTC-HHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccCcc-c---cce--EEEeCCCCC-HHHHHHHHHHHHhhCCceEEEEc
Confidence 578999997 9999999998888999 9999998765 1 111 11 123333 123333333331 1279999998
Q ss_pred CCc
Q 025257 148 IGN 150 (255)
Q Consensus 148 ~g~ 150 (255)
.|.
T Consensus 74 ag~ 76 (242)
T 1uay_A 74 AGV 76 (242)
T ss_dssp CCC
T ss_pred ccc
Confidence 873
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0098 Score=46.69 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=59.8
Q ss_pred hhcCCCCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCcc
Q 025257 64 NTAKVEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
+... -.|.+++|.|.| .+|..+++++...|+ +|++..+. . .++.+.+++ +|
T Consensus 144 ~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~-------------------t--~~L~~~~~~-----AD 195 (276)
T 3ngx_A 144 DYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSK-------------------T--KDIGSMTRS-----SK 195 (276)
T ss_dssp HHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C--SCHHHHHHH-----SS
T ss_pred HHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCC-------------------c--ccHHHhhcc-----CC
Confidence 4444 789999999985 699999999999999 88887642 1 445555553 79
Q ss_pred EEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 143 YSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 143 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++.++|.+..+. -.+++++ ..++.+|..
T Consensus 196 IVI~Avg~p~~I~--~~~vk~G-avVIDvgi~ 224 (276)
T 3ngx_A 196 IVVVAVGRPGFLN--REMVTPG-SVVIDVGIN 224 (276)
T ss_dssp EEEECSSCTTCBC--GGGCCTT-CEEEECCCE
T ss_pred EEEECCCCCcccc--HhhccCC-cEEEEeccC
Confidence 9999999876232 2457886 888888764
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.012 Score=45.87 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=61.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
.+|.|+|+|.+|...+..+...|. .|.+.++++++.+.+. +.|... . .++.+.+. .+|+|+.|+..
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~g~~~---~----~~~~~~~~-----~~D~Vi~~v~~ 70 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPY---A----MSHQDLID-----QVDLVILGIKP 70 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCB---C----SSHHHHHH-----TCSEEEECSCG
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHHcCCEe---e----CCHHHHHh-----cCCEEEEEeCc
Confidence 378999999999999888888887 9999999988887775 457541 1 23333333 48999999985
Q ss_pred HHHHHHHHHHhccCCceEEEE
Q 025257 151 VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 151 ~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.. ....+..++++ ..++..
T Consensus 71 ~~-~~~v~~~l~~~-~~vv~~ 89 (259)
T 2ahr_A 71 QL-FETVLKPLHFK-QPIISM 89 (259)
T ss_dssp GG-HHHHHTTSCCC-SCEEEC
T ss_pred Hh-HHHHHHHhccC-CEEEEe
Confidence 54 67777777764 555555
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.015 Score=47.30 Aligned_cols=87 Identities=17% Similarity=0.157 Sum_probs=61.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|.|.|.|.+|...++.++..|. +|++.++++++. +.+. +.. . .++.+.+. ..|+|+.++.
T Consensus 145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~~~~-~~~----~---~~l~ell~-----~aDvV~l~~p 208 (333)
T 1j4a_A 145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE--LEKK-GYY----V---DSLDDLYK-----QADVISLHVP 208 (333)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH--HHHT-TCB----C---SCHHHHHH-----HCSEEEECSC
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh--HHhh-Cee----c---CCHHHHHh-----hCCEEEEcCC
Confidence 46799999999999999999999999 999999887664 2332 221 1 23333333 3789988776
Q ss_pred cHH----HH-HHHHHHhccCCceEEEEcc
Q 025257 150 NVS----VM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~~----~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
... .+ +..+..++++ +.++.++.
T Consensus 209 ~~~~t~~li~~~~l~~mk~g-a~lIn~ar 236 (333)
T 1j4a_A 209 DVPANVHMINDESIAKMKQD-VVIVNVSR 236 (333)
T ss_dssp CCGGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred CcHHHHHHHhHHHHhhCCCC-cEEEECCC
Confidence 322 12 4567788886 88887765
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0053 Score=50.86 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=48.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
..+|||+|+ |.+|..+++.+...|. +|+++++++.+.......+...+ .|..+ .+ .+.+... ++|+||++.
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d--~~---~~~~~~~-~~d~Vih~A 101 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMTEDMFCDEFHLVDLRV--ME---NCLKVTE-GVDHVFNLA 101 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSCGGGTCSEEEECCTTS--HH---HHHHHHT-TCSEEEECC
T ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCccchhhccCCceEEECCCCC--HH---HHHHHhC-CCCEEEECc
Confidence 468999998 9999999998888998 99999987655332222233332 23332 22 2222222 699999988
Q ss_pred C
Q 025257 149 G 149 (255)
Q Consensus 149 g 149 (255)
+
T Consensus 102 ~ 102 (379)
T 2c5a_A 102 A 102 (379)
T ss_dssp C
T ss_pred e
Confidence 7
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0021 Score=52.35 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=48.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH----HHHHhc------CC--cEE-eCCCCCCchHHHHHHhh
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF----DRAKNF------GV--TEF-VNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~----~~~~~~------g~--~~v-i~~~~~~~~~~~~i~~~ 136 (255)
++++||+|+ |++|.++++.+...|+ +|+.+.++.++. +.++.. +. ..+ .|-.+ +..+.+.+.+.
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~-~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~ 79 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD-SKSVAAARERV 79 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC-HHHHHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCC-HHHHHHHHHHH
Confidence 568999997 9999999999999999 777776544332 122221 12 111 24333 13344444444
Q ss_pred cCCCccEEEecCC
Q 025257 137 TDGGVDYSFECIG 149 (255)
Q Consensus 137 ~~~~~d~v~d~~g 149 (255)
..+.+|+++++.|
T Consensus 80 ~~g~iD~lVnnAG 92 (327)
T 1jtv_A 80 TEGRVDVLVCNAG 92 (327)
T ss_dssp TTSCCSEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 3347999999887
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0068 Score=47.73 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=61.9
Q ss_pred hhhhhH--HHhhcC-CCCCCEEEEEcCC-hHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchH
Q 025257 56 PTGLGA--VWNTAK-VEPGSIVAVFGLG-TVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPI 129 (255)
Q Consensus 56 ~ta~~~--l~~~~~-~~~~~~vlI~G~g-~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~ 129 (255)
||++.+ +.+... --.|.+++|.|.| .+|..+++++... |+ +|++..+. . .++
T Consensus 140 cTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~a-tVtv~h~~-------------------t--~~L 197 (281)
T 2c2x_A 140 CTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENA-TVTLCHTG-------------------T--RDL 197 (281)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCC-EEEEECTT-------------------C--SCH
T ss_pred ChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCC-EEEEEECc-------------------h--hHH
Confidence 444443 223344 3478999999997 5799999999998 78 88876432 1 445
Q ss_pred HHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 130 QQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 130 ~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.+.++ .+|+|+.++|.+. + -.-++++++ ..++.+|..
T Consensus 198 ~~~~~-----~ADIVI~Avg~p~-~-I~~~~vk~G-avVIDVgi~ 234 (281)
T 2c2x_A 198 PALTR-----QADIVVAAVGVAH-L-LTADMVRPG-AAVIDVGVS 234 (281)
T ss_dssp HHHHT-----TCSEEEECSCCTT-C-BCGGGSCTT-CEEEECCEE
T ss_pred HHHHh-----hCCEEEECCCCCc-c-cCHHHcCCC-cEEEEccCC
Confidence 55554 4899999999886 3 333457886 888888764
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0094 Score=46.48 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=66.3
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~~ 135 (255)
+.....++++.+||-.|+| .|..+..+++. +. +|++++.+++..+.+++ .|... ++...- .++ .
T Consensus 29 l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~--~~l-----~ 98 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA--EQM-----P 98 (260)
T ss_dssp HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC---CC-----C
T ss_pred HHHHhCCCCCCEEEEEeCC-CCHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH--HhC-----C
Confidence 4455677899999999987 37777776664 55 99999999988777754 23221 111111 111 1
Q ss_pred hcCCCccEEEecCCc------HHHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDGGVDYSFECIGN------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
..++.||+|+....- ...+..+.+.|+++ |+++....
T Consensus 99 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~~~~~ 141 (260)
T 1vl5_A 99 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVDN 141 (260)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC-CEEEEEEc
Confidence 112379999965332 34588999999997 99988643
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.021 Score=48.49 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=53.9
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cC-CcEE-eCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FG-VTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g-~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
+.+|+|+|+|.+|...++.+...|. +|++.++++++.+.+.+ ++ ...+ .|..+ ..++.+.+ . ++|+|++|
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d-~~~l~~~l----~-~~DvVIn~ 75 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVND-DAALDAEV----A-KHDLVISL 75 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTTC-HHHHHHHH----T-TSSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecCC-HHHHHHHH----c-CCcEEEEC
Confidence 5689999999999999988888898 89999998877665533 33 2111 23322 01222222 2 69999999
Q ss_pred CCcHHHHHHHHHHhcc
Q 025257 148 IGNVSVMRAALECCHK 163 (255)
Q Consensus 148 ~g~~~~~~~~~~~l~~ 163 (255)
++..........++..
T Consensus 76 a~~~~~~~i~~a~l~~ 91 (450)
T 1ff9_A 76 IPYTFHATVIKSAIRQ 91 (450)
T ss_dssp CC--CHHHHHHHHHHH
T ss_pred CccccchHHHHHHHhC
Confidence 9864322223344555
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0079 Score=46.96 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=30.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
+.+|+|.|+|++|..++..+...|+.++.+++.+
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d 61 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD 61 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4799999999999999999999999888888654
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0057 Score=50.39 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=49.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh-cCCcEE-eCCC-CCCch-HHHHHHhhcCCCccEE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKN-FGVTEF-VNPK-DHDKP-IQQVLVDLTDGGVDYS 144 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~-~g~~~v-i~~~-~~~~~-~~~~i~~~~~~~~d~v 144 (255)
..+|||+|+ |.+|..+++.+... |. +|+++++++++.+.+.+ .+...+ .|.. + .+ +.+.+. ++|+|
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d--~~~~~~~~~-----~~d~V 95 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDLVKHERMHFFEGDITIN--KEWVEYHVK-----KCDVI 95 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGGGGSTTEEEEECCTTTC--HHHHHHHHH-----HCSEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhhccCCCeEEEeCccCCC--HHHHHHHhc-----cCCEE
Confidence 468999997 99999999888877 88 99999998876555433 333333 2333 2 32 222232 59999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
|++++.
T Consensus 96 ih~A~~ 101 (372)
T 3slg_A 96 LPLVAI 101 (372)
T ss_dssp EECBCC
T ss_pred EEcCcc
Confidence 998773
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.032 Score=45.64 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=81.5
Q ss_pred EEEEEcCChHHHH-HHHHHHHc-CCCeEEEEc-CCcchHHH-HHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 73 IVAVFGLGTVGLA-VAEGAKAA-GASRVIGID-IDPKKFDR-AKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 73 ~vlI~G~g~vG~~-a~~l~~~~-g~~~v~~~~-~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
++.|.|+|.+|.. .+..++.. ++ ++++++ +++++.+. ++++|...++ .++.+.+.+ ..+|+|+-|+
T Consensus 25 rigiIG~G~ig~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~y------~d~~ell~~---~~iDaV~I~t 94 (350)
T 4had_A 25 RFGIISTAKIGRDNVVPAIQDAENC-VVTAIASRDLTRAREMADRFSVPHAF------GSYEEMLAS---DVIDAVYIPL 94 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHHCSSE-EEEEEECSSHHHHHHHHHHHTCSEEE------SSHHHHHHC---SSCSEEEECS
T ss_pred EEEEEcChHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcCCCeee------CCHHHHhcC---CCCCEEEEeC
Confidence 7899999999975 45555554 67 888764 55565554 4678877665 445444442 2799999999
Q ss_pred CcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhh---cc--CcEEEEeeeCCCCccCcHHHHHHHHHcCCCC
Q 025257 149 GNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL---VT--GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK 220 (255)
Q Consensus 149 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~---~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (255)
......+.+..++.. |+=|++..+-.... -....+ .+ +..+.-.. ++.....++.+-+++++|.+-
T Consensus 95 P~~~H~~~~~~al~a--GkhVl~EKPla~~~--~ea~~l~~~a~~~~~~l~v~~--~~R~~p~~~~~k~~i~~G~iG 165 (350)
T 4had_A 95 PTSQHIEWSIKAADA--GKHVVCEKPLALKA--GDIDAVIAARDRNKVVVTEAY--MITYSPVWQKVRSLIDEGAIG 165 (350)
T ss_dssp CGGGHHHHHHHHHHT--TCEEEECSCCCSSG--GGGHHHHHHHHHHTCCEEECC--GGGGSHHHHHHHHHHHTTTTS
T ss_pred CCchhHHHHHHHHhc--CCEEEEeCCcccch--hhHHHHHHHHHHcCCceeEee--eeecCHHHHHhhHhhhcCCCC
Confidence 987778899999988 56667755321110 011111 11 33332111 122234677888888888763
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.008 Score=49.46 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=28.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 107 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~ 107 (255)
.+|||+|+ |.+|..+++.+...|. +|+++++++++
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~ 37 (372)
T 1db3_A 2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRASS 37 (372)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC----
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence 57999997 9999999998888998 99999987654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0086 Score=47.53 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=49.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+|.|+|+|.+|...+..+.. |. +|++.++++++.+.+.+.|... .+ . .+ .+ ..+|+|+.|+..+.
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~g~~~-~~-~---~~---~~-----~~~D~vi~~v~~~~ 67 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEEFGSE-AV-P---LE---RV-----AEARVIFTCLPTTR 67 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHHHCCE-EC-C---GG---GG-----GGCSEEEECCSSHH
T ss_pred eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHCCCcc-cC-H---HH---HH-----hCCCEEEEeCCChH
Confidence 58899999999998887777 98 8999999998888876656432 11 1 11 11 14788888877654
Q ss_pred HHHHHH
Q 025257 153 VMRAAL 158 (255)
Q Consensus 153 ~~~~~~ 158 (255)
.++..+
T Consensus 68 ~~~~v~ 73 (289)
T 2cvz_A 68 EVYEVA 73 (289)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344433
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0092 Score=48.89 Aligned_cols=89 Identities=25% Similarity=0.260 Sum_probs=57.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|.|.|.|.+|...++.++..|. +|++.+++.++. ..++.|+..+ .++.+.+. ..|+|+-++.
T Consensus 167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~~-------~~l~ell~-----~aDvV~l~~P 232 (347)
T 1mx3_A 167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV-------STLQDLLF-----HSDCVTLHCG 232 (347)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC-------SSHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcchh-hHhhcCCeec-------CCHHHHHh-----cCCEEEEcCC
Confidence 57899999999999999999999999 999999876542 3345565321 12322232 2677766554
Q ss_pred cH-H---HH-HHHHHHhccCCceEEEEcc
Q 025257 150 NV-S---VM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~-~---~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
.. . .+ +..+..++++ ..++.++.
T Consensus 233 ~t~~t~~li~~~~l~~mk~g-ailIN~ar 260 (347)
T 1mx3_A 233 LNEHNHHLINDFTVKQMRQG-AFLVNTAR 260 (347)
T ss_dssp CCTTCTTSBSHHHHTTSCTT-EEEEECSC
T ss_pred CCHHHHHHhHHHHHhcCCCC-CEEEECCC
Confidence 21 1 12 4455666664 66665544
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0075 Score=46.99 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHHh--hcCC
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVD--LTDG 139 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~~--~~~~ 139 (255)
..++.+||-.|+|+ |..++.+++.....+|++++.+++..+.+++ +|... ++. .+.. .+.. ...+
T Consensus 78 ~~~~~~vLDiG~G~-G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~-----~d~~-~~~~~~~~~~ 150 (249)
T 3g89_A 78 WQGPLRVLDLGTGA-GFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALW-----GRAE-VLAREAGHRE 150 (249)
T ss_dssp CCSSCEEEEETCTT-TTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEE-----CCHH-HHTTSTTTTT
T ss_pred cCCCCEEEEEcCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEE-----CcHH-HhhcccccCC
Confidence 46788999998764 6667777777633399999999998888753 45432 222 2222 2221 1123
Q ss_pred CccEEEec-CCc-HHHHHHHHHHhccCCceEEEEc
Q 025257 140 GVDYSFEC-IGN-VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 140 ~~d~v~d~-~g~-~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.||+|+-. +.. +..++.+.+.|+++ |+++.+-
T Consensus 151 ~fD~I~s~a~~~~~~ll~~~~~~Lkpg-G~l~~~~ 184 (249)
T 3g89_A 151 AYARAVARAVAPLCVLSELLLPFLEVG-GAAVAMK 184 (249)
T ss_dssp CEEEEEEESSCCHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred CceEEEECCcCCHHHHHHHHHHHcCCC-eEEEEEe
Confidence 79999853 332 33467788899997 9988764
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.011 Score=44.39 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=62.8
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCcEEeCCCCCCchHHHHHHhhcCCCccEE
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
..+.++.+||-.|+|. |..+..+++. |. +|++++.+++..+.+++. +...+...- .++ . ..+.||+|
T Consensus 39 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~d~---~~~----~--~~~~fD~v 106 (211)
T 3e23_A 39 GELPAGAKILELGCGA-GYQAEAMLAA-GF-DVDATDGSPELAAEASRRLGRPVRTMLF---HQL----D--AIDAYDAV 106 (211)
T ss_dssp TTSCTTCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHTSCCEECCG---GGC----C--CCSCEEEE
T ss_pred HhcCCCCcEEEECCCC-CHHHHHHHHc-CC-eEEEECCCHHHHHHHHHhcCCceEEeee---ccC----C--CCCcEEEE
Confidence 3467889999999864 6666666665 88 999999999888888654 443222111 111 1 12379999
Q ss_pred EecCC--------cHHHHHHHHHHhccCCceEEEEc
Q 025257 145 FECIG--------NVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 145 ~d~~g--------~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+.... ....+..+.+.|+++ |+++..-
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 141 (211)
T 3e23_A 107 WAHACLLHVPRDELADVLKLIWRALKPG-GLFYASY 141 (211)
T ss_dssp EECSCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred EecCchhhcCHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence 85432 123478888999997 9887763
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0095 Score=52.66 Aligned_cols=103 Identities=21% Similarity=0.204 Sum_probs=64.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc---------chHHH----HHhcCCcEEeCCCCCC--chHHHHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP---------KKFDR----AKNFGVTEFVNPKDHD--KPIQQVL 133 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~---------~~~~~----~~~~g~~~vi~~~~~~--~~~~~~i 133 (255)
.++.+||+|+ +++|.+.++.+...|+ +|++.+++. ++.+. +++.|...+.|..+.. ..+.+.+
T Consensus 7 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~ 85 (604)
T 2et6_A 7 KDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETA 85 (604)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 4678999997 8999999999999999 999987654 33332 2334544444544311 1233333
Q ss_pred HhhcCCCccEEEecCCcH----------H---------------HHHHHHHHhcc-CCceEEEEccC
Q 025257 134 VDLTDGGVDYSFECIGNV----------S---------------VMRAALECCHK-GWGTSVIVGVA 174 (255)
Q Consensus 134 ~~~~~~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~-~~G~~v~~g~~ 174 (255)
.+.. |.+|+++++.|.. . ..+.++..++. ++|++|.+++.
T Consensus 86 ~~~~-G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ 151 (604)
T 2et6_A 86 VKNF-GTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSP 151 (604)
T ss_dssp HHHH-SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred HHHc-CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCH
Confidence 3332 3799999998831 0 23455556632 23899998763
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.013 Score=47.90 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=58.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|.|.|.|.+|...++.++..|. +|++.++++.+.+... |+..+ .++.+.+. ..|+|+-++.
T Consensus 172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~--g~~~~-------~~l~ell~-----~sDvV~l~~P 236 (345)
T 4g2n_A 172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE--GAIYH-------DTLDSLLG-----ASDIFLIAAP 236 (345)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHT--TCEEC-------SSHHHHHH-----TCSEEEECSC
T ss_pred CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchhhhc--CCeEe-------CCHHHHHh-----hCCEEEEecC
Confidence 46799999999999999999999999 9999998865544332 44321 23333333 3677776655
Q ss_pred c-HH---HH-HHHHHHhccCCceEEEEcc
Q 025257 150 N-VS---VM-RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~-~~---~~-~~~~~~l~~~~G~~v~~g~ 173 (255)
. +. .+ ...+..++++ ..++.++-
T Consensus 237 lt~~T~~li~~~~l~~mk~g-ailIN~aR 264 (345)
T 4g2n_A 237 GRPELKGFLDHDRIAKIPEG-AVVINISR 264 (345)
T ss_dssp CCGGGTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred CCHHHHHHhCHHHHhhCCCC-cEEEECCC
Confidence 2 11 11 4566777775 67766653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0091 Score=46.81 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=65.1
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHHhhcCC
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
.++++.+||-.|+|. |..+..+++..+. +|++++.++...+.+++ .|.. .++...- .++ ....+
T Consensus 43 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~-----~~~~~ 113 (267)
T 3kkz_A 43 NLTEKSLIADIGCGT-GGQTMVLAGHVTG-QVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM--DDL-----PFRNE 113 (267)
T ss_dssp CCCTTCEEEEETCTT-CHHHHHHHTTCSS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSC-----CCCTT
T ss_pred cCCCCCEEEEeCCCC-CHHHHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh--hhC-----CCCCC
Confidence 478999999999875 8888888888556 99999999987777743 3421 1221110 111 01123
Q ss_pred CccEEEec-----CCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 140 GVDYSFEC-----IGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 140 ~~d~v~d~-----~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.||+|+-. .+....++.+.+.|+++ |+++....
T Consensus 114 ~fD~i~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 151 (267)
T 3kkz_A 114 ELDLIWSEGAIYNIGFERGLNEWRKYLKKG-GYLAVSEC 151 (267)
T ss_dssp CEEEEEESSCGGGTCHHHHHHHHGGGEEEE-EEEEEEEE
T ss_pred CEEEEEEcCCceecCHHHHHHHHHHHcCCC-CEEEEEEe
Confidence 79999843 23344578888999997 99887643
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0067 Score=48.24 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CC-------c--EEeCCCCCCchHHHHHHhhc
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GV-------T--EFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~-------~--~vi~~~~~~~~~~~~i~~~~ 137 (255)
..++.+||+.|+|. |..+..+++..+..+|++++.+++-.+.+++. .. . .++. .+..+.+...
T Consensus 76 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~-----~D~~~~l~~~- 148 (283)
T 2i7c_A 76 SKEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI-----EDASKFLENV- 148 (283)
T ss_dssp SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE-----SCHHHHHHHC-
T ss_pred CCCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE-----CChHHHHHhC-
Confidence 34668999999764 66677777765444999999999988888652 11 1 1221 2333333332
Q ss_pred CCCccEEEe-cCC---c------HHHHHHHHHHhccCCceEEEEcc
Q 025257 138 DGGVDYSFE-CIG---N------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 ~~~~d~v~d-~~g---~------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.||+|+- ... . ...++.+.+.|+++ |.++....
T Consensus 149 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~~ 193 (283)
T 2i7c_A 149 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN-GYCVAQCE 193 (283)
T ss_dssp CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEECC
Confidence 347999984 321 1 34478889999997 99887643
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=50.66 Aligned_cols=70 Identities=27% Similarity=0.340 Sum_probs=44.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
++|||+|+ |.+|..+++.+...|+ +|+++++++++.+. ....|-.+ +..+.+.+.++ .+++|+++++.|.
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~~~D~~~-~~~~~~~~~~~-~~~~d~vi~~Ag~ 72 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQADIEA------DLSTPGGR-ETAVAAVLDRC-GGVLDGLVCCAGV 72 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHHHH-HHHHHHHHHHH-TTCCSEEEECCCC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHccc------cccCCccc-HHHHHHHHHHc-CCCccEEEECCCC
Confidence 37999998 9999999998888999 99999987654321 00001000 01122222222 2479999998874
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.02 Score=43.29 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=61.4
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHH----HHHhcCCcEEeCCCCCCchHHHHHHhhcCCCc
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD----RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~----~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
..++++++||-.|+|+ |..+..+++..|..+|++++.+++..+ .+++...-..+..+. .... ..... .+.|
T Consensus 53 ~~~~~g~~VLDlGcGt-G~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~--~~~~-~~~~~-~~~f 127 (210)
T 1nt2_A 53 LKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA--SKPW-KYSGI-VEKV 127 (210)
T ss_dssp CCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT--TCGG-GTTTT-CCCE
T ss_pred cCCCCCCEEEEECCcC-CHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCC--CCch-hhccc-ccce
Confidence 4578999999999875 777788888775339999999986433 333332111121111 1110 00011 1379
Q ss_pred cEEEecCCcHH----HHHHHHHHhccCCceEEEE
Q 025257 142 DYSFECIGNVS----VMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 142 d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~ 171 (255)
|+|+-....+. .+..+.+.|++| |+++..
T Consensus 128 D~V~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~i~ 160 (210)
T 1nt2_A 128 DLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIM 160 (210)
T ss_dssp EEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred eEEEEeccChhHHHHHHHHHHHHhCCC-CEEEEE
Confidence 99986544322 257788899997 998877
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.013 Score=46.88 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=52.0
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
.+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+... .++.+.+ . .|+|+.|+..+
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~-----~-aDvvi~~vp~~ 81 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEAGATLA-------DSVADVA-----A-ADLIHITVLDD 81 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHTTCEEC-------SSHHHHT-----T-SSEEEECCSSH
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCEEc-------CCHHHHH-----h-CCEEEEECCCh
Confidence 479999999999999999888998 99999999999998888775421 2222211 1 67888887754
Q ss_pred HHHH
Q 025257 152 SVMR 155 (255)
Q Consensus 152 ~~~~ 155 (255)
..++
T Consensus 82 ~~~~ 85 (296)
T 3qha_A 82 AQVR 85 (296)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0086 Score=47.00 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=48.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH----HhcCCc-EE--eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRA----KNFGVT-EF--VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~-~~~~~~~~~----~~~g~~-~v--i~~~~~~~~~~~~i~~~~~-- 138 (255)
.++++||+|+ |++|.+.++.+...|+ +|++.. ++.++.+.. ++.+.. .+ .|-.+ ++.+.+.+.+...
T Consensus 25 ~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 102 (267)
T 4iiu_A 25 MSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVAN-REQCREVLEHEIAQH 102 (267)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHh
Confidence 3578999997 9999999999999999 886654 555444333 233322 12 23333 1223332332211
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+.+|+++++.|.
T Consensus 103 g~id~li~nAg~ 114 (267)
T 4iiu_A 103 GAWYGVVSNAGI 114 (267)
T ss_dssp CCCSEEEECCCC
T ss_pred CCccEEEECCCC
Confidence 379999998873
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.01 Score=45.66 Aligned_cols=101 Identities=20% Similarity=0.309 Sum_probs=66.0
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc---EEeCCCCCCchHHHHHHhhcC
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT---EFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~---~vi~~~~~~~~~~~~i~~~~~ 138 (255)
+.......++.+||-.|+|. |..+..+++. |..+|++++.+++..+.+++.... .++...- .++ ....
T Consensus 35 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~--~~~-----~~~~ 105 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADL--DKL-----HLPQ 105 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCG--GGC-----CCCT
T ss_pred HHHhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcCh--hhc-----cCCC
Confidence 44556667889999999875 6666677665 554899999999988888765421 1111110 111 0112
Q ss_pred CCccEEEecCC------cHHHHHHHHHHhccCCceEEEEc
Q 025257 139 GGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 139 ~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+.||+|+.... ....++.+.+.|+++ |+++...
T Consensus 106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~ 144 (243)
T 3bkw_A 106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPG-GHFVFST 144 (243)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred CCceEEEEeccccccchHHHHHHHHHHhcCcC-cEEEEEe
Confidence 37999985432 133478888999997 9888753
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0026 Score=49.01 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=60.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
++.+|||+|+ |.+|...++.+...|+. +|+++++++++.+....-+...+ .|..+ . +.+.+... ++|++++
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d--~---~~~~~~~~-~~d~vi~ 90 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK--L---DDYASAFQ-GHDVGFC 90 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG--G---GGGGGGGS-SCSEEEE
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCC--H---HHHHHHhc-CCCEEEE
Confidence 3578999997 99999999888888863 79999988765432221222222 22221 1 22333322 6999999
Q ss_pred cCCcHH--------------HHHHHHHHhcc-CCceEEEEccCC
Q 025257 147 CIGNVS--------------VMRAALECCHK-GWGTSVIVGVAA 175 (255)
Q Consensus 147 ~~g~~~--------------~~~~~~~~l~~-~~G~~v~~g~~~ 175 (255)
+.|... ....+++.+.. +.++++.++...
T Consensus 91 ~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~ 134 (242)
T 2bka_A 91 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG 134 (242)
T ss_dssp CCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCc
Confidence 998532 12233344433 225888887653
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.015 Score=43.21 Aligned_cols=95 Identities=20% Similarity=0.167 Sum_probs=58.9
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcC----CCc
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTD----GGV 141 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~----~~~ 141 (255)
-++++.+||=+|+|+ |..+..+++. +. +|++++.++... .-++..+. |..+ ....+.+.+..+ +.|
T Consensus 22 ~~~~g~~VLDlG~G~-G~~s~~la~~-~~-~V~gvD~~~~~~----~~~v~~~~~D~~~--~~~~~~~~~~~~~~~~~~~ 92 (191)
T 3dou_A 22 VVRKGDAVIEIGSSP-GGWTQVLNSL-AR-KIISIDLQEMEE----IAGVRFIRCDIFK--ETIFDDIDRALREEGIEKV 92 (191)
T ss_dssp CSCTTCEEEEESCTT-CHHHHHHTTT-CS-EEEEEESSCCCC----CTTCEEEECCTTS--SSHHHHHHHHHHHHTCSSE
T ss_pred CCCCCCEEEEEeecC-CHHHHHHHHc-CC-cEEEEecccccc----CCCeEEEEccccC--HHHHHHHHHHhhcccCCcc
Confidence 367899999999864 5555555555 77 999999887531 11333221 2222 444444544332 379
Q ss_pred cEEEe-----cCCc------------HHHHHHHHHHhccCCceEEEE
Q 025257 142 DYSFE-----CIGN------------VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 142 d~v~d-----~~g~------------~~~~~~~~~~l~~~~G~~v~~ 171 (255)
|+|+. +.|. ...++.+.+.|+++ |+++.-
T Consensus 93 D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpG-G~lv~k 138 (191)
T 3dou_A 93 DDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNG-GNVLLK 138 (191)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred eEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC-CEEEEE
Confidence 99984 2332 12356678899997 998754
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.012 Score=48.86 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=51.8
Q ss_pred cCC-CCCCEEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCCcch----------------HHHHHhcCCcEE---eCCC
Q 025257 66 AKV-EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKK----------------FDRAKNFGVTEF---VNPK 123 (255)
Q Consensus 66 ~~~-~~~~~vlI~G~-g~vG~~a~~l~~~-~g~~~v~~~~~~~~~----------------~~~~~~~g~~~v---i~~~ 123 (255)
..+ ..++++||+|+ +++|++.++.+.. .|+ +|++++++.+. .+.+++.|.... .|-.
T Consensus 41 ~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvt 119 (405)
T 3zu3_A 41 GPIANGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAF 119 (405)
T ss_dssp CCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred CCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCC
Confidence 344 56778899997 8999998888887 999 99998765432 123345564321 2333
Q ss_pred CCCchHH---HHHHhhcCCCccEEEecCCc
Q 025257 124 DHDKPIQ---QVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 124 ~~~~~~~---~~i~~~~~~~~d~v~d~~g~ 150 (255)
+ ++... +.+.+.. |.+|+++++.|.
T Consensus 120 d-~~~v~~~v~~i~~~~-G~IDiLVNNAG~ 147 (405)
T 3zu3_A 120 S-DEIKQLTIDAIKQDL-GQVDQVIYSLAS 147 (405)
T ss_dssp S-HHHHHHHHHHHHHHT-SCEEEEEECCCC
T ss_pred C-HHHHHHHHHHHHHHc-CCCCEEEEcCcc
Confidence 2 12222 2333322 379999998875
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0024 Score=50.29 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=47.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
+++|||+|+ |.+|..+++.+...|+ +|+++++++.+.+ ..+...+ .|-.+ .+ .+.+... ++|+++++.
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~~~---~~~~~~~~~Dl~d--~~---~~~~~~~-~~D~vi~~A 72 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLDPA---GPNEECVQCDLAD--AN---AVNAMVA-GCDGIVHLG 72 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCCCC---CTTEEEEECCTTC--HH---HHHHHHT-TCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcccc---CCCCEEEEcCCCC--HH---HHHHHHc-CCCEEEECC
Confidence 358999997 9999999999988999 9999998876543 1122222 23332 22 2333222 699999998
Q ss_pred Cc
Q 025257 149 GN 150 (255)
Q Consensus 149 g~ 150 (255)
|.
T Consensus 73 g~ 74 (267)
T 3rft_A 73 GI 74 (267)
T ss_dssp SC
T ss_pred CC
Confidence 74
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 255 | ||||
| d1d1ta2 | 176 | c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human ( | 3e-53 | |
| d1p0fa2 | 174 | c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog | 3e-47 | |
| d1e3ia2 | 174 | c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse ( | 2e-45 | |
| d2jhfa2 | 176 | c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse ( | 1e-43 | |
| d2fzwa2 | 176 | c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human ( | 1e-42 | |
| d1cdoa2 | 175 | c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga | 1e-37 | |
| d1f8fa2 | 174 | c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase { | 4e-33 | |
| d1jqba2 | 174 | c.2.1.1 (A:1140-1313) Bacterial secondary alcohol | 4e-20 | |
| d1cdoa1 | 199 | b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase | 2e-15 | |
| d1vj0a2 | 182 | c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T | 4e-14 | |
| d1p0fa1 | 198 | b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro | 6e-13 | |
| d2fzwa1 | 197 | b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase | 2e-12 | |
| d1kola2 | 195 | c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps | 2e-12 | |
| d1h2ba2 | 172 | c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo | 1e-11 | |
| d1e3ia1 | 202 | b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase | 5e-11 | |
| d2jhfa1 | 198 | b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase | 1e-10 | |
| d1pl8a2 | 171 | c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh | 4e-10 | |
| d1f8fa1 | 194 | b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr | 4e-10 | |
| d1uufa2 | 168 | c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc | 3e-09 | |
| d1e3ja2 | 170 | c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh | 1e-07 | |
| d1piwa1 | 192 | b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy | 3e-07 | |
| d1piwa2 | 168 | c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase | 9e-07 | |
| d1kola1 | 201 | b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog | 9e-07 | |
| d1pqwa_ | 183 | c.2.1.1 (A:) Putative enoyl reductase domain of po | 1e-04 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 2e-04 | |
| d1qora2 | 179 | c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher | 3e-04 | |
| d1mv8a2 | 202 | c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse | 4e-04 | |
| d1dlja2 | 196 | c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD | 9e-04 |
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 168 bits (426), Expect = 3e-53
Identities = 92/175 (52%), Positives = 118/175 (67%)
Query: 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102
AP +KVCL+GCG TG GA T KV+PGS VFGLG VGL+V G K+AGASR+IGID
Sbjct: 2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61
Query: 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 162
++ KF++A G TE ++PKD KPI +VL ++T V Y+FE IG++ M AL CH
Sbjct: 62 LNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCH 121
Query: 163 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKK 217
+GTSV+VGV S + ++ P L TGR WKG FGG KSR VP LV +++ K
Sbjct: 122 MNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAK 176
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Score = 153 bits (386), Expect = 3e-47
Identities = 90/176 (51%), Positives = 117/176 (66%), Gaps = 2/176 (1%)
Query: 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102
APL+ CL+GCG TG GA NTAKV PGS AVFGLG VG + G KAAGASR+IG+
Sbjct: 1 APLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG 59
Query: 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 162
KF +A G TE +NPKD+DKPI +V+ + T+GGVDY+ EC G + M AL+ +
Sbjct: 60 THKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTY 119
Query: 163 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 218
G G +V++G+A+ + + P L+TGR KG+ FGGFK +V LVD YMKK+
Sbjct: 120 CGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKK 174
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Score = 148 bits (373), Expect = 2e-45
Identities = 86/176 (48%), Positives = 115/176 (65%), Gaps = 2/176 (1%)
Query: 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102
A L++VCL+GCG +G GA NTAKV PGS AVFGLG VGL+ G K AGASR+I ID
Sbjct: 1 ANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID 60
Query: 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 162
I+ +KF +AK G T+ +NP++ DKP+Q V+ +LT GGVDYS +C G ++AA++C
Sbjct: 61 INGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV 120
Query: 163 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 218
GWG+ +VG E++ ++ GR GT FGG+KS VP LV Y K+
Sbjct: 121 LGWGSCTVVGA--KVDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKK 174
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Score = 143 bits (362), Expect = 1e-43
Identities = 97/176 (55%), Positives = 124/176 (70%)
Query: 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102
+PL+KVCL+GCG TG G+ AKV GS AVFGLG VGL+V G KAAGA+R+IG+D
Sbjct: 1 SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD 60
Query: 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 162
I+ KF +AK G TE VNP+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC
Sbjct: 61 INKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQ 120
Query: 163 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 218
+ +G SVIVGV Q +S P L++GR WKG FGGFKS+ VP LV +M K+
Sbjct: 121 EAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKK 176
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 141 bits (355), Expect = 1e-42
Identities = 130/176 (73%), Positives = 148/176 (84%)
Query: 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102
APLDKVCLLGCG+ TG GA NTAK+EPGS+ AVFGLG VGLAV G K AGASR+IG+D
Sbjct: 1 APLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60
Query: 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 162
I+ KF RAK FG TE +NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CH
Sbjct: 61 INKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH 120
Query: 163 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 218
KGWG SV+VGVAASG+EI+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+
Sbjct: 121 KGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKK 176
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Score = 128 bits (322), Expect = 1e-37
Identities = 107/176 (60%), Positives = 130/176 (73%), Gaps = 1/176 (0%)
Query: 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 102
APLD VCLLGCGV TG GA NTAKVEPGS AVFGLG VGLA G +AGA R+I +D
Sbjct: 1 APLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD 60
Query: 103 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 162
++P KF++AK FG T+FVNP DH +PI QVL +T+GGVD+S EC+GNV VMR ALE C
Sbjct: 61 LNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCL 120
Query: 163 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 218
KGWG SV+VG +++TRP QL+ GR WKG+ FGGFK + VP +V Y+ K+
Sbjct: 121 KGWGVSVLVGW-TDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKK 175
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 116 bits (292), Expect = 4e-33
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 44 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 103
P++ + LGCG+ TG GA N KV P S +G G VGL+ AK GAS +I +DI
Sbjct: 2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61
Query: 104 DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHK 163
+ + AK G T +N K D + ++TDGGV+++ E G+ +++
Sbjct: 62 VESRLELAKQLGATHVINSKTQD--PVAAIKEITDGGVNFALESTGSPEILKQG-VDALG 118
Query: 164 GWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 218
G +VG G L+ G+ G G + +P LV Y + +
Sbjct: 119 ILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGK 174
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Score = 82.3 bits (202), Expect = 4e-20
Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 8/172 (4%)
Query: 44 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 103
PL+ ++ + TG A +E GS V V G+G VGL GAK GA R+IG+
Sbjct: 2 PLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60
Query: 104 DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHK 163
P + AK +G T+ +N + QV+ GVD G + A++
Sbjct: 61 RPICVEAAKFYGATDILNY-KNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKP 119
Query: 164 GWGTSVIVGVAASGQEISTRPFQLVTG---RVWKGTAFGGFKSRSQVPWLVD 212
G G + SG + + G + KG G R + L D
Sbjct: 120 G-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPG--GRLRAERLRD 168
|
| >d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Score = 70.3 bits (171), Expect = 2e-15
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M+ +++RF+ G+ + F+GTSTFSQYTVV+ ++VAKIDP LD+ + +
Sbjct: 123 VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVND 182
Query: 61 AVWNTAKVEPGSIVAVF 77
A+ + V
Sbjct: 183 AIDLMKHGKCIRTVLSL 199
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Score = 66.5 bits (161), Expect = 4e-14
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 6/159 (3%)
Query: 45 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104
LD + + C T A + G V + G G +GL A++ GA VI I
Sbjct: 3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62
Query: 105 PKKFDRAKNFGVTEFVNPKDH--DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 162
P + A+ G +N ++ ++ + ++ G D+ E G+ + E
Sbjct: 63 PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR 122
Query: 163 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 201
+G G + GVA + + ++ + V K F G
Sbjct: 123 RG-GFYSVAGVAVPQDPVPFKVYEWL---VLKNATFKGI 157
|
| >d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Score = 63.7 bits (154), Expect = 6e-13
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GKPIY+ MGTSTF++YTVV D++VAKIDP+ ++ + +
Sbjct: 122 LMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL----- 176
Query: 61 AVWNTAKVEPGSIVAVFGLGTVGLAV 86
++ + G G + +
Sbjct: 177 -----DQINKAFELLSSGQGVRSIMI 197
|
| >d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 62.2 bits (150), Expect = 2e-12
Identities = 31/76 (40%), Positives = 39/76 (51%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP +D+
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINK 180
Query: 61 AVWNTAKVEPGSIVAV 76
A + V
Sbjct: 181 AFELMHSGKSIRTVVK 196
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 61.8 bits (149), Expect = 2e-12
Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 18/159 (11%)
Query: 45 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104
+ + L +PTG A V PGS V V G G VGLA A A+ GA+ VI D++
Sbjct: 1 IRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN 59
Query: 105 PKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG--------------- 149
P + AK G D +Q+ L + VD + + +G
Sbjct: 60 PARLAHAKAQGFEIADLSLDTP-LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEA 118
Query: 150 NVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV 188
+V+ + ++ G I G+ + + +
Sbjct: 119 PATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKI 156
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 59.2 bits (142), Expect = 1e-11
Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 11/164 (6%)
Query: 51 LGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 109
L T AV A+ + PG+ VA+ G+G +G + K + VI +D+ +K
Sbjct: 12 LADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLK 71
Query: 110 RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSV 169
A+ G V+ + P++QV+ GV+ + + +G+ + + + G +
Sbjct: 72 LAERLGADHVVDARRD--PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLI 128
Query: 170 IVGVAASGQEISTRPFQLVTGRV-WKGTAFGGFKSRSQVPWLVD 212
IVG G E+ ++++ V ++G+ G + ++ LV
Sbjct: 129 IVGY---GGELRFPTIRVISSEVSFEGSLVG---NYVELHELVT 166
|
| >d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Score = 58.4 bits (140), Expect = 5e-11
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M DR SRF+ G+ IYHFMG S+FSQYTVV + ++A++D + LD + +
Sbjct: 126 LMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESIND 185
Query: 61 AVWNTAKVEPGSIVAV 76
A+ ++ G +
Sbjct: 186 AI---DLMKEGKSIRT 198
|
| >d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Score = 57.2 bits (137), Expect = 1e-10
Identities = 33/78 (42%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID LD L V
Sbjct: 122 TMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALD---PLITHVLPFEK 178
Query: 61 AVWNTAKVEPGSIVAVFG 78
+ G +
Sbjct: 179 INEGFDLLRSGESIRTIL 196
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.3 bits (132), Expect = 4e-10
Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 8/164 (4%)
Query: 57 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 116
G+ A V G V V G G +G+ AKA GA++V+ D+ + +AK G
Sbjct: 14 VGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA 72
Query: 117 TEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 175
+ V+ G + + EC G + ++A + G +V V
Sbjct: 73 DLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG---GTLVLVGL 129
Query: 176 SGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEI 219
+ + V G F+ + P + K +
Sbjct: 130 GSEMTTVPLLHAAIREV---DIKGVFRYCNTWPVAISMLASKSV 170
|
| >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 55.3 bits (132), Expect = 4e-10
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 1 MMNDRKSRFSINGK--PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 58
++ + + HF S+F+ Y + + + K+ P D++
Sbjct: 116 ADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEIN 175
Query: 59 LGAVWNTAKVEPGSIVAV 76
A+ + + I+ +
Sbjct: 176 QAAIDSRKGITLKPIIKI 193
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Score = 52.7 bits (125), Expect = 3e-09
Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 12/179 (6%)
Query: 41 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 100
PQ L V L C T + + PG V V G+G +G + A A GA V
Sbjct: 2 PQEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAF 60
Query: 101 IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALEC 160
K + AK G E VN ++ D+ + D+ + +
Sbjct: 61 TT-SEAKREAAKALGADEVVNSRNADEMAAHL------KSFDFILNTVAAPHNLDDFTTL 113
Query: 161 CHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEI 219
+ GT +VG A+ + ++ R G+ G + ++D + I
Sbjct: 114 LKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIG---GIPETQEMLDFCAEHGI 168
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Score = 48.0 bits (113), Expect = 1e-07
Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 13/160 (8%)
Query: 57 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 116
G+ A A V+ G+ V V G G +GL AKA GA V + + AKN G
Sbjct: 14 VGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR-RLEVAKNCGA 71
Query: 117 TEFVNPKDHDKPIQQVLV---DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 173
+ + ++ + + +C GN + + GT ++VG+
Sbjct: 72 DVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRT-GGTLMLVGM 130
Query: 174 AASGQEISTRPFQLVTGRVWKG-TAFGGFKSRSQVPWLVD 212
+ + + F+ + P ++
Sbjct: 131 GSQMVTVPLVNA------CAREIDIKSVFRYCNDYPIALE 164
|
| >d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (112), Expect = 3e-07
Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
K + + ++ ++ Y VH+ V I ++ + + GV
Sbjct: 111 EPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFE 170
Query: 61 AVWNTAKVEPGSIVAVFG 78
+ V + +
Sbjct: 171 RM-EKGDVRYRFTLVGYD 187
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.8 bits (107), Expect = 9e-07
Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 10/177 (5%)
Query: 44 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 103
P L CG T + PG V + GLG +G +K A + I
Sbjct: 2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVISR 59
Query: 104 DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHK 163
+K + A G ++ + ++ V S + ++M A+ K
Sbjct: 60 SSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAM----K 115
Query: 164 GWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK 220
G V + + + +S +P+ + +A G S ++ L+ +K+IK
Sbjct: 116 VGGRIVSISIPEQHEMLSLKPY-GLKAVSISYSALG---SIKELNQLLKLVSEKDIK 168
|
| >d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 46.0 bits (108), Expect = 9e-07
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 58
+ +R + T ++Y +V D ++ K+ + + + V
Sbjct: 110 CLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQ 169
Query: 59 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 95
+ ++ + A G F G V + K A
Sbjct: 170 VISLDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.3 bits (90), Expect = 1e-04
Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 11/178 (6%)
Query: 51 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 110
G T ++ ++ PG V + A +R+ K +
Sbjct: 6 FGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM 65
Query: 111 AKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSV 169
GV + + D +++LTDG GVD + ++ R G +
Sbjct: 66 LSRLGVEYVGDSRSVD--FADEILELTDGYGVDVVLNSLAGEAIQRG--VQILAPGGRFI 121
Query: 170 IVGVAASGQEISTRPFQLVTGRVWKGTAFGGF------KSRSQVPWLVDKYMKKEIKV 221
+G + S L + + R + ++ +++V
Sbjct: 122 ELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEV 179
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 6/112 (5%)
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG---VTEFVNPKDHDKPIQ 130
AV GLG G A A G V+ DID ++ ++ G +
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 62
Query: 131 QVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 182
+ L D + + A +I + G
Sbjct: 63 TSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLI--ILNPGATGGA 112
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 18/151 (11%), Positives = 44/151 (29%), Gaps = 2/151 (1%)
Query: 51 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 110
T + T +++P +A A +++IG +K
Sbjct: 9 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS 68
Query: 111 AKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVI 170
A G + +N ++ D + + L ++T G +L+C +
Sbjct: 69 ALKAGAWQVINYREED--LVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSF 126
Query: 171 VGVAASGQEISTRPFQLVTGRVWKGTAFGGF 201
+ + ++ + G+
Sbjct: 127 GNSSGAVTGVNLGILNQKGSLYVTRPSLQGY 157
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.1 bits (87), Expect = 4e-04
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 125
+++FGLG VG A A G VIG+D+ K D +
Sbjct: 3 ISIFGLGYVGAVCAGCLSARG-HEVIGVDVSSTKIDLINQGKSPIVEPGLEA 53
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 37.3 bits (85), Expect = 9e-04
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 125
+AV G G VGL++ + + V +DI P K D+ N ++
Sbjct: 3 IAVAGSGYVGLSLG--VLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEY 52
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 255 | |||
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 100.0 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 99.98 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 99.97 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 99.97 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 99.97 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 99.97 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 99.97 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 99.97 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 99.97 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 99.96 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 99.96 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 99.96 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 99.96 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 99.96 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.96 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 99.96 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 99.96 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 99.96 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 99.96 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 99.96 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 99.95 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 99.95 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 99.95 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 99.94 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 99.94 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 99.93 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.91 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 99.91 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.65 | |
| d1yb5a1 | 150 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 99.35 | |
| d1e3ja1 | 178 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 99.34 | |
| d1iz0a1 | 131 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 99.27 | |
| d1h2ba1 | 171 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 99.2 | |
| d1qora1 | 147 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 99.17 | |
| d1xa0a1 | 152 | B. subtilis YhfP homologue {Bacillus stearothermop | 99.17 | |
| d1cdoa1 | 199 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 99.02 | |
| d1pl8a1 | 185 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 98.99 | |
| d1tt7a1 | 162 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 98.98 | |
| d1piwa1 | 192 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 98.95 | |
| d1llua1 | 175 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 98.94 | |
| d1gu7a1 | 175 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 98.9 | |
| d1rjwa1 | 171 | Alcohol dehydrogenase {Bacillus stearothermophilus | 98.85 | |
| d1f8fa1 | 194 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 98.72 | |
| d1o89a1 | 146 | Hypothetical protein YhdH {Escherichia coli [TaxId | 98.71 | |
| d2fzwa1 | 197 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 98.7 | |
| d1kola1 | 201 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 98.63 | |
| d1e3ia1 | 202 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 98.6 | |
| d1vj0a1 | 184 | Hypothetical protein TM0436 {Thermotoga maritima [ | 98.52 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.42 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.35 | |
| d1vj1a1 | 166 | Putative zinc-binding alcohol dehydrogenase {Mouse | 98.34 | |
| d1jvba1 | 177 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 98.32 | |
| d1jqba1 | 177 | Bacterial secondary alcohol dehydrogenase {Clostri | 98.25 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 98.22 | |
| d1v3va1 | 147 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 98.21 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 98.14 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 98.14 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.1 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 98.04 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 98.01 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 97.99 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 97.97 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 97.96 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.95 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 97.92 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.9 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.9 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 97.87 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 97.87 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 97.87 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 97.86 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.83 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 97.83 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 97.81 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 97.79 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 97.78 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 97.78 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 97.77 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 97.76 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.75 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.75 | |
| d2jhfa1 | 198 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 97.75 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.75 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 97.75 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 97.74 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 97.73 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 97.73 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.72 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.71 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 97.71 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 97.7 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.7 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 97.7 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 97.68 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 97.68 | |
| d1p0fa1 | 198 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.65 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 97.65 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 97.64 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.62 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 97.61 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 97.6 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.58 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 97.58 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 97.58 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.58 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 97.57 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 97.56 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 97.54 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 97.53 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 97.5 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 97.5 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 97.5 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 97.49 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 97.47 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 97.47 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 97.47 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 97.47 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 97.46 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 97.45 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 97.44 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 97.43 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.43 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 97.42 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 97.42 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 97.41 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 97.41 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.41 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 97.4 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 97.4 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.4 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.37 | |
| d1uufa1 | 179 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.36 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 97.35 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 97.33 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 97.33 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.26 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.26 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 97.26 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.25 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 97.25 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.24 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 97.23 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 97.22 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.19 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 97.15 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 97.15 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 97.15 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 97.14 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 97.12 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 97.09 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 97.06 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.05 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.0 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 96.97 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.91 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 96.84 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 96.83 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 96.82 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 96.82 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 96.82 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.8 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 96.79 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 96.76 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.74 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.73 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.71 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.68 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 96.64 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 96.62 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 96.61 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 96.5 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 96.48 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 96.47 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 96.47 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.38 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.37 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 96.35 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 96.35 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 96.29 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.26 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.25 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 96.2 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 96.16 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.16 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 96.12 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.11 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 96.08 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 96.08 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 96.06 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.05 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.05 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 96.05 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.03 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 96.03 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.03 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.02 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 96.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 95.98 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 95.97 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.96 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.95 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 95.95 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 95.91 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.84 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.81 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.81 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.81 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 95.81 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.8 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 95.79 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 95.75 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.74 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 95.74 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 95.73 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.73 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.72 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 95.69 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.63 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 95.62 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 95.6 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 95.59 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.56 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.56 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 95.55 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.52 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.51 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 95.51 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.51 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.48 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.44 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.4 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.38 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 95.34 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 95.27 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.23 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 95.23 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 95.22 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 95.16 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 95.16 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 95.14 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 95.13 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 95.13 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 95.12 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.12 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 95.09 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.07 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.07 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 95.05 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 95.03 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 95.03 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 95.02 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.0 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.97 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.95 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.95 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 94.95 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 94.94 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 94.94 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 94.91 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 94.89 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.87 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 94.87 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 94.86 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 94.77 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.71 | |
| d2bhsa1 | 292 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 94.7 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 94.67 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 94.65 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.62 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 94.61 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 94.59 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 94.58 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.55 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 94.52 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 94.49 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.46 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 94.45 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 94.42 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 94.41 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.41 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.41 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 94.36 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 94.34 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 94.3 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 94.28 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 94.21 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 94.2 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.15 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 94.15 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.06 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 94.05 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 94.05 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 94.03 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 94.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 93.9 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.78 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 93.74 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 93.6 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.58 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 93.57 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 93.52 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 93.43 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 93.39 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.38 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 93.28 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 93.27 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 93.26 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 93.17 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.13 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.12 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.91 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.9 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 92.87 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 92.84 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 92.76 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 92.73 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 92.65 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 92.64 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 92.62 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 92.62 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 92.6 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 92.58 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 92.56 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.52 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 92.52 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 92.48 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 92.41 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 92.41 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 92.35 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 92.34 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 92.33 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 92.31 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.27 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 92.27 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 92.27 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 92.24 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 92.23 | |
| d1y7la1 | 310 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 92.19 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.17 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.11 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 92.1 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.07 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 91.91 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 91.85 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 91.85 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 91.83 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.73 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 91.71 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 91.68 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 91.59 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 91.49 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 91.48 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 91.41 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 91.32 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 91.27 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 91.26 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 91.23 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 91.15 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 91.13 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 91.01 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 91.0 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 90.94 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 90.94 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 90.87 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 90.84 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 90.78 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 90.61 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 90.54 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.32 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 90.08 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 90.01 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 89.94 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 89.88 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 89.8 | |
| d2ax3a2 | 211 | Hypothetical protein TM0922, N-terminal domain {Th | 89.63 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 89.63 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 89.59 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 89.53 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 89.21 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 89.13 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 89.01 | |
| d1z7wa1 | 320 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 88.95 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 88.86 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 88.74 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 88.66 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 88.44 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 88.28 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 87.8 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 87.78 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 87.73 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 87.7 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 87.63 | |
| d1fcja_ | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 87.58 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 87.43 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.42 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 87.36 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 87.34 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 87.32 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 87.23 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 87.14 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 87.06 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 86.87 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 86.7 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 86.69 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 86.69 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 86.65 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 86.46 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 86.38 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 86.22 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 85.8 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 85.76 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 85.49 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 85.22 | |
| d1o58a_ | 293 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 85.03 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 84.93 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.84 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 84.73 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 84.67 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 84.54 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.41 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.36 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 84.3 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 84.24 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 83.98 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 83.82 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 83.77 | |
| d1tdja1 | 331 | Threonine deaminase {Escherichia coli [TaxId: 562] | 83.48 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 83.31 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 82.9 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 82.82 | |
| d1kjna_ | 152 | Hypothetical protein MTH777 (MT0777) {Archaeon Met | 82.48 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 82.44 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 82.33 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 82.25 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 82.23 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 82.19 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 81.83 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 81.56 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 81.52 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 81.19 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.04 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 80.79 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 80.69 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 80.62 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 80.59 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 80.57 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 80.56 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 80.56 |
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=100.00 E-value=6.8e-33 Score=206.36 Aligned_cols=173 Identities=30% Similarity=0.517 Sum_probs=156.0
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 122 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~ 122 (255)
++++.+++++|++.|||+++.+..+++||++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++|+++++|+
T Consensus 1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~ 80 (174)
T d1f8fa2 1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS 80 (174)
T ss_dssp SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence 35688999999999999999999999999999999999999999999999999677788889999999999999999999
Q ss_pred CCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCC
Q 025257 123 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF 201 (255)
Q Consensus 123 ~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 201 (255)
++ +++.+++++.+++++|+||||+|.+..++.++++++++ |+++.+|........+++...++. ++++.|+..+++
T Consensus 81 ~~--~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~ 157 (174)
T d1f8fa2 81 KT--QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSG 157 (174)
T ss_dssp TT--SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGS
T ss_pred CC--cCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCc-eEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCC
Confidence 98 89999999999889999999999988799999999997 999999986555566777777665 999999988777
Q ss_pred CccCcHHHHHHHHHcCC
Q 025257 202 KSRSQVPWLVDKYMKKE 218 (255)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ 218 (255)
..+++++++++++++|+
T Consensus 158 ~~~~~~~~~~~l~~~Gk 174 (174)
T d1f8fa2 158 SPKKFIPELVRLYQQGK 174 (174)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHcCC
Confidence 66678999999999885
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=99.98 E-value=3.5e-31 Score=196.65 Aligned_cols=173 Identities=50% Similarity=0.861 Sum_probs=147.6
Q ss_pred cccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCC
Q 025257 45 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 124 (255)
Q Consensus 45 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~ 124 (255)
+.+||++.|++.|||+++.+.++++||++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++|+++++|+++
T Consensus 2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~ 81 (174)
T d1p0fa2 2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD 81 (174)
T ss_dssp CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence 45699999999999999989999999999999999999999999999999878999999999999999999999999876
Q ss_pred CCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCcc
Q 025257 125 HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSR 204 (255)
Q Consensus 125 ~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 204 (255)
.+....+..+..+++++|++||++|.+..++..+..+++++|+++.+|.......++++...+++++++.|+.++++. .
T Consensus 82 ~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~-~ 160 (174)
T d1p0fa2 82 YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFK-G 160 (174)
T ss_dssp CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTCEEEECSGGGCC-G
T ss_pred chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHhCCCEEEEEEeCCCC-H
Confidence 223355555555555999999999999888999988876338999999876666677776666678899999887764 3
Q ss_pred CcHHHHHHHHHcCC
Q 025257 205 SQVPWLVDKYMKKE 218 (255)
Q Consensus 205 ~~~~~~~~~~~~~~ 218 (255)
++++++++++.+|+
T Consensus 161 ~d~~~lidl~~~gK 174 (174)
T d1p0fa2 161 EEVSRLVDDYMKKK 174 (174)
T ss_dssp GGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCC
Confidence 58999999999875
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.5e-32 Score=200.31 Aligned_cols=166 Identities=20% Similarity=0.273 Sum_probs=146.0
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 121 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~ 121 (255)
+|+++||+++++++|||+++.+..+++||++|||+|+ |++|++++|+++.+|+ +|+++++++++.++++++|+++++|
T Consensus 1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~ 79 (174)
T d1yb5a2 1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN 79 (174)
T ss_dssp SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence 5889999999999999999989999999999999997 9999999999999999 9999999999999999999999999
Q ss_pred CCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeC
Q 025257 122 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFG 199 (255)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~ 199 (255)
+++ +++.+.+++.+++ ++|++|||+|++. ++.++++++++ |+++.+|..+ ..+++...++. ++++.|+.+.
T Consensus 80 ~~~--~~~~~~i~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~-G~iv~~G~~~---~~~~~~~~~~~k~~~i~g~~~~ 152 (174)
T d1yb5a2 80 HRE--VNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLLSHG-GRVIVVGSRG---TIEINPRDTMAKESSIIGVTLF 152 (174)
T ss_dssp TTS--TTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHEEEE-EEEEECCCCS---CEEECTHHHHTTTCEEEECCGG
T ss_pred ccc--ccHHHHhhhhhccCCceEEeecccHHH-HHHHHhccCCC-CEEEEEecCC---CCCCCHHHHHHCCCEEEEEEec
Confidence 998 9999999999988 9999999999876 99999999997 9999998742 34666666655 9999998765
Q ss_pred CCCccCcHHHHHHHHHcC
Q 025257 200 GFKSRSQVPWLVDKYMKK 217 (255)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~ 217 (255)
.. ..+++++++++++++
T Consensus 153 ~~-~~~~~~~~~~~l~~g 169 (174)
T d1yb5a2 153 SS-TKEEFQQYAAALQAG 169 (174)
T ss_dssp GC-CHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHH
Confidence 43 235677777776653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=99.97 E-value=6.2e-31 Score=195.01 Aligned_cols=173 Identities=49% Similarity=0.921 Sum_probs=147.3
Q ss_pred CcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCC
Q 025257 44 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 123 (255)
Q Consensus 44 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 123 (255)
++++||.++|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++..|+++|++++.+++|+++++++|+++++++.
T Consensus 2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~ 81 (174)
T d1e3ia2 2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR 81 (174)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence 46789999999999999998999999999999999999999999999999997899999999999999999999999876
Q ss_pred CCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCc
Q 025257 124 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKS 203 (255)
Q Consensus 124 ~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 203 (255)
+.+....+..+...++++|++|||+|.+.+++.++++++++.|+++.+|... ...+++...++.+.++.|+..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~--~~~~i~~~~~~~~k~i~Gs~~Gs~~~ 159 (174)
T d1e3ia2 82 ELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV--DEMTIPTVDVILGRSINGTFFGGWKS 159 (174)
T ss_dssp GCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS--SEEEEEHHHHHTTCEEEECSGGGCCH
T ss_pred cchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCC--CccccchHHHhccCEEEEEEeeCCCh
Confidence 4223343334444444999999999999889999999998328999999854 45567766666788999999888877
Q ss_pred cCcHHHHHHHHHcCC
Q 025257 204 RSQVPWLVDKYMKKE 218 (255)
Q Consensus 204 ~~~~~~~~~~~~~~~ 218 (255)
.++++++++++++|+
T Consensus 160 ~~d~p~li~l~~~GK 174 (174)
T d1e3ia2 160 VDSVPNLVSDYKNKK 174 (174)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCcC
Confidence 788999999998875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=99.97 E-value=3.7e-31 Score=196.43 Aligned_cols=170 Identities=29% Similarity=0.425 Sum_probs=146.7
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 122 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~ 122 (255)
+|+|+|++++++++|||+++ +.++++||++|+|+|+|++|++++|+++.+|+.+|++++++++|++.++++|+++++|+
T Consensus 1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~ 79 (174)
T d1jqba2 1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY 79 (174)
T ss_dssp SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence 57899999999999999986 77999999999999999999999999999998789999999999999999999999999
Q ss_pred CCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchh---hccCcEEEEeee
Q 025257 123 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ---LVTGRVWKGTAF 198 (255)
Q Consensus 123 ~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~~~~~~~~g~~~ 198 (255)
++ +++.+.+++.+++ ++|+||||+|.+..++.++++++++ |+++.+|........+++... .+++.++.++..
T Consensus 80 ~~--~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 156 (174)
T d1jqba2 80 KN--GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLC 156 (174)
T ss_dssp GG--SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCC
T ss_pred cc--hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcC-CEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecC
Confidence 98 8899999999998 9999999999888799999999997 999999987655555544332 334788888765
Q ss_pred CCCCccCcHHHHHHHHHcCC
Q 025257 199 GGFKSRSQVPWLVDKYMKKE 218 (255)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~ 218 (255)
+.. +..++.+.++++.|+
T Consensus 157 ~~~--r~~~e~l~~li~~gk 174 (174)
T d1jqba2 157 PGG--RLRAERLRDMVVYNR 174 (174)
T ss_dssp CCH--HHHHHHHHHHHHTTS
T ss_pred CCC--cccHHHHHHHHHcCC
Confidence 443 234677888888775
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=2.3e-31 Score=200.01 Aligned_cols=173 Identities=18% Similarity=0.260 Sum_probs=148.1
Q ss_pred ccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCC
Q 025257 46 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 124 (255)
Q Consensus 46 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~ 124 (255)
+|||+++++++|||+++.+..++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|+++++++++
T Consensus 1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~ 79 (183)
T d1pqwa_ 1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS 79 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence 5789999999999999999999999999999987 9999999999999999 9999999999999999999999999998
Q ss_pred CCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCC-
Q 025257 125 HDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK- 202 (255)
Q Consensus 125 ~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 202 (255)
+++.+.+++.+++ ++|++|||+|++. ++.++++++++ |+++.+|..+...........+.++.++.++.+....
T Consensus 80 --~~~~~~v~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
T d1pqwa_ 80 --VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPG-GRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLK 155 (183)
T ss_dssp --STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEE-EEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHH
T ss_pred --cCHHHHHHHHhCCCCEEEEEecccchH-HHHHHHHhcCC-CEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceec
Confidence 9999999999988 9999999999977 99999999997 9999998765433334444455568888877543221
Q ss_pred -----ccCcHHHHHHHHHcCCCCCCC
Q 025257 203 -----SRSQVPWLVDKYMKKEIKVDE 223 (255)
Q Consensus 203 -----~~~~~~~~~~~~~~~~~~~~~ 223 (255)
.++.++++++++++|++++.|
T Consensus 156 ~~~~~~~~~~~~v~~~i~~G~i~p~P 181 (183)
T d1pqwa_ 156 LQPARYRQLLQHILQHVADGKLEVLP 181 (183)
T ss_dssp HCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred cCHHHHHHHHHHHHHHHHCCCCceeC
Confidence 124577888999999987643
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=99.97 E-value=3e-30 Score=192.64 Aligned_cols=174 Identities=69% Similarity=1.134 Sum_probs=145.1
Q ss_pred CcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCC
Q 025257 44 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 123 (255)
Q Consensus 44 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 123 (255)
++++||+++|++.|||+++.+.++++||++|||+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++|+.
T Consensus 2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~ 81 (176)
T d2fzwa2 2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ 81 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence 57889999999999999998999999999999999999999999999999987899999999999999999999999986
Q ss_pred CCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCC-ccccCchhhccCcEEEEeeeCCCC
Q 025257 124 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ-EISTRPFQLVTGRVWKGTAFGGFK 202 (255)
Q Consensus 124 ~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 202 (255)
+.+.+..+.++..+++++|+|||++|.+..++.+..+++++ |+++.++...... ....+...+++++++.|+.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 160 (176)
T d2fzwa2 82 DFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG-WGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWK 160 (176)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred chhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC-ceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCc
Confidence 53345555666666569999999999998788999999996 8877775543322 223334445568999999988777
Q ss_pred ccCcHHHHHHHHHcCC
Q 025257 203 SRSQVPWLVDKYMKKE 218 (255)
Q Consensus 203 ~~~~~~~~~~~~~~~~ 218 (255)
..+++.++++++++|+
T Consensus 161 ~~~d~~~li~l~~~GK 176 (176)
T d2fzwa2 161 SVESVPKLVSEYMSKK 176 (176)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6678999999998875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=99.97 E-value=4.1e-30 Score=191.10 Aligned_cols=172 Identities=49% Similarity=0.886 Sum_probs=148.2
Q ss_pred CcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCC
Q 025257 44 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 123 (255)
Q Consensus 44 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 123 (255)
++++||.++|++.|+|+++.+.+++++|++|+|+|+|++|+.++|+++..|+.+|++++.+++|++.++++|+++++|++
T Consensus 3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~ 82 (176)
T d1d1ta2 3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK 82 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence 57899999999999999998999999999999999999999999999999977999999999999999999999999988
Q ss_pred CCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCC
Q 025257 124 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK 202 (255)
Q Consensus 124 ~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 202 (255)
+. ....+.+.+.+.+ ++|+++|++|.+..++..+..+.+++|+++.+|.........+++..++++.+++|+.+++..
T Consensus 83 ~~-~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 161 (176)
T d1d1ta2 83 DS-TKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLK 161 (176)
T ss_dssp GC-SSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred cc-chHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHhCCCEEEEEEEeCCC
Confidence 61 2234556666666 999999999999878888887765348999999877666667777777779999999988877
Q ss_pred ccCcHHHHHHHHHc
Q 025257 203 SRSQVPWLVDKYMK 216 (255)
Q Consensus 203 ~~~~~~~~~~~~~~ 216 (255)
.++++.++++++.+
T Consensus 162 ~~~dip~li~~~~~ 175 (176)
T d1d1ta2 162 SRDDVPKLVTEFLA 175 (176)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhC
Confidence 77788888887654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=99.97 E-value=1.9e-29 Score=188.11 Aligned_cols=175 Identities=55% Similarity=1.010 Sum_probs=142.8
Q ss_pred CcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCC
Q 025257 44 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 123 (255)
Q Consensus 44 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 123 (255)
++++||+++|++.|||+++.+.++++||++|+|+|+|++|++++++++..|+.+|++++++++|+++++++|+++++++.
T Consensus 2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~ 81 (176)
T d2jhfa2 2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 81 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence 57889999999999999999999999999999999999999999999999977999999999999999999999999876
Q ss_pred CCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCCc
Q 025257 124 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKS 203 (255)
Q Consensus 124 ~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 203 (255)
+.+....+..+..+++++|++||++|.+..++.++.++++++|+++..+..............+++++++.|+.+++...
T Consensus 82 ~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~ 161 (176)
T d2jhfa2 82 DYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKS 161 (176)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCCH
T ss_pred CchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCCH
Confidence 52233444444444449999999999999889999999986244444444333333334444556699999999887777
Q ss_pred cCcHHHHHHHHHcCC
Q 025257 204 RSQVPWLVDKYMKKE 218 (255)
Q Consensus 204 ~~~~~~~~~~~~~~~ 218 (255)
+++++++++++.+|+
T Consensus 162 ~~~~~~li~~~~~GK 176 (176)
T d2jhfa2 162 KDSVPKLVADFMAKK 176 (176)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCcC
Confidence 788999999998875
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.96 E-value=6.5e-30 Score=189.65 Aligned_cols=167 Identities=20% Similarity=0.266 Sum_probs=149.0
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 121 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~ 121 (255)
+++.+||+++|++.|||+++ ++.+++++++|+|+|+ |++|++++|+++..|+.+|++++++++++++++++|++++++
T Consensus 1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~ 79 (170)
T d1jvba2 1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN 79 (170)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence 57789999999999999987 7789999999999996 999999999999999769999999999999999999999999
Q ss_pred CCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeC
Q 025257 122 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFG 199 (255)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~ 199 (255)
+++ +++.+.+++.+.+ ++|+++||+|++..++.++++++++ |+++.+|.... +.+++...++. ++++.|++.+
T Consensus 80 ~~~--~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~k~i~i~Gs~~~ 154 (170)
T d1jvba2 80 ASM--QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGA--DLHYHAPLITLSEIQFVGSLVG 154 (170)
T ss_dssp TTT--SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCC--CCCCCHHHHHHHTCEEEECCSC
T ss_pred cCC--cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccC-CEEEEeccccC--ccccCHHHHHhCCcEEEEEecC
Confidence 988 8899999998887 8999999999988899999999997 99999998643 45666666655 9999999765
Q ss_pred CCCccCcHHHHHHHHHcCC
Q 025257 200 GFKSRSQVPWLVDKYMKKE 218 (255)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ 218 (255)
+ +++++++++++++|+
T Consensus 155 ~---~~d~~~~l~lv~~GK 170 (170)
T d1jvba2 155 N---QSDFLGIMRLAEAGK 170 (170)
T ss_dssp C---HHHHHHHHHHHHTTS
T ss_pred C---HHHHHHHHHHHHcCC
Confidence 4 378999999999885
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=1.3e-29 Score=190.05 Aligned_cols=168 Identities=23% Similarity=0.351 Sum_probs=143.7
Q ss_pred cccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCC
Q 025257 45 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 124 (255)
Q Consensus 45 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~ 124 (255)
++.+|++.|+++|||+++.+..++++|++|||+|+|++|++++|+++++|+.+|+++++++++++.++++|+++++|+++
T Consensus 3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~ 82 (182)
T d1vj0a2 3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE 82 (182)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence 35678899999999999988889999999999999999999999999999878999999999999999999999999887
Q ss_pred CCch---HHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchh-h-ccCcEEEEeee
Q 025257 125 HDKP---IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-L-VTGRVWKGTAF 198 (255)
Q Consensus 125 ~~~~---~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~-~~~~~~~g~~~ 198 (255)
.+ ..+.+.+.+++ ++|+||||+|.+..++.++++++++ |+++.+|......+++++... + ++++++.|++.
T Consensus 83 --~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~ 159 (182)
T d1vj0a2 83 --TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWV 159 (182)
T ss_dssp --SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCC
T ss_pred --cchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCccccccHHHHHHCCcEEEEEEe
Confidence 54 44557777878 9999999999987799999999997 999999986655666666543 3 45999999876
Q ss_pred CCCCccCcHHHHHHHHHcCC
Q 025257 199 GGFKSRSQVPWLVDKYMKKE 218 (255)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~ 218 (255)
++. .++++++++++++.
T Consensus 160 ~~~---~~~~~~~~~i~~~~ 176 (182)
T d1vj0a2 160 SDT---SHFVKTVSITSRNY 176 (182)
T ss_dssp CCH---HHHHHHHHHHHTCH
T ss_pred CCH---HHHHHHHHHHHHCh
Confidence 533 67889999888753
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=5.5e-30 Score=191.68 Aligned_cols=139 Identities=21% Similarity=0.267 Sum_probs=126.0
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 121 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~ 121 (255)
+|+++||+++++++|||++|.+..+++||++|||+|+ |++|++++|+|+..|+ +|++++++++++++++++|+++++|
T Consensus 1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~ 79 (179)
T d1qora2 1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN 79 (179)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence 5899999999999999999999999999999999987 8899999999999999 9999999999999999999999999
Q ss_pred CCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhh
Q 025257 122 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL 187 (255)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~ 187 (255)
+++ +++.+++++.|++ ++|+++|++|++. ++.++++++++ |+++.++.... ...+++...+
T Consensus 80 ~~~--~d~~~~v~~~t~g~g~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~ 141 (179)
T d1qora2 80 YRE--EDLVERLKEITGGKKVRVVYDSVGRDT-WERSLDCLQRR-GLMVSFGNSSG-AVTGVNLGIL 141 (179)
T ss_dssp TTT--SCHHHHHHHHTTTCCEEEEEECSCGGG-HHHHHHTEEEE-EEEEECCCTTC-CCCCBCTHHH
T ss_pred CCC--CCHHHHHHHHhCCCCeEEEEeCccHHH-HHHHHHHHhcC-CeeeecccccC-Cccccchhhh
Confidence 998 9999999999988 9999999999887 99999999997 99999987654 3334444333
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.96 E-value=1.1e-29 Score=187.86 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=134.3
Q ss_pred CCcccccccccchhhhhhH---HHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE
Q 025257 43 APLDKVCLLGCGVPTGLGA---VWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 118 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~---l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~ 118 (255)
+|+++||+++++++|||++ |.+....++|++|||+|+ |+||.+++|+++.+|+ +|+++++++++.++++++|+++
T Consensus 1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~ 79 (176)
T d1xa0a2 1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE 79 (176)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence 6899999999999999966 445688999999999987 9999999999999999 9999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEee
Q 025257 119 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTA 197 (255)
Q Consensus 119 vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~ 197 (255)
++|++ +.+.+.++...++++|+|||++|++. ++.++++|+++ |+++.+|...+ ...+++...++. ++++.|+.
T Consensus 80 vi~~~---~~~~~~~~~~~~~gvD~vid~vgg~~-~~~~l~~l~~~-Griv~~G~~~g-~~~~~~~~~~~~k~~~i~Gv~ 153 (176)
T d1xa0a2 80 VLARE---DVMAERIRPLDKQRWAAAVDPVGGRT-LATVLSRMRYG-GAVAVSGLTGG-AEVPTTVHPFILRGVSLLGID 153 (176)
T ss_dssp EEECC------------CCSCCEEEEEECSTTTT-HHHHHHTEEEE-EEEEECSCCSS-SCCCCCSHHHHHTTCEEEECC
T ss_pred eeecc---hhHHHHHHHhhccCcCEEEEcCCchh-HHHHHHHhCCC-ceEEEeecccC-cccCCCHHHHHHCCcEEEEEe
Confidence 99986 34444444433449999999999998 99999999997 99999999744 455677777665 99999975
Q ss_pred eCCCCccCcHHHHHHHHHcCCCCC
Q 025257 198 FGGFKSRSQVPWLVDKYMKKEIKV 221 (255)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~ 221 (255)
.... +.+...++++.+. +.++|
T Consensus 154 ~~~~-~~~~~~~~~~~la-g~lkP 175 (176)
T d1xa0a2 154 SVYC-PMDLRLRIWERLA-GDLKP 175 (176)
T ss_dssp SSSC-CHHHHHHHHHHHH-TTTCC
T ss_pred CCcC-CHHHHHHHHHHHh-cccCC
Confidence 3322 2345556666553 55544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=99.96 E-value=7.6e-29 Score=184.72 Aligned_cols=173 Identities=57% Similarity=1.047 Sum_probs=142.0
Q ss_pred CcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCC
Q 025257 44 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 123 (255)
Q Consensus 44 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 123 (255)
++++||+++|++.|+|+++.+.++++||++|+|+|+|++|+++++.++..|+.+|++++++++|++.++++|+++++|+.
T Consensus 2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~ 81 (175)
T d1cdoa2 2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN 81 (175)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence 57889999999999999998999999999999999999999999999999987899999999999999999999999987
Q ss_pred CCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhccCcEEEEeeeCCCC
Q 025257 124 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK 202 (255)
Q Consensus 124 ~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 202 (255)
+ +.+..+++.+.+.+ ++|+++|++|.+..++.++.++++++++++..|.. ...........+++++++.|+..+++.
T Consensus 82 ~-~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~-~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 159 (175)
T d1cdoa2 82 D-HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT-DLHDVATRPIQLIAGRTWKGSMFGGFK 159 (175)
T ss_dssp G-CSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC-SSSCEEECHHHHHTTCEEEECSGGGCC
T ss_pred C-cchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEec-CCcccCccHHHHHCCcEEEEEEEeCCc
Confidence 5 13345566666655 99999999999887889899988852444445443 333323333334559999999888877
Q ss_pred ccCcHHHHHHHHHcCC
Q 025257 203 SRSQVPWLVDKYMKKE 218 (255)
Q Consensus 203 ~~~~~~~~~~~~~~~~ 218 (255)
.+++++++++++.+|+
T Consensus 160 ~~~d~~~~i~l~~~gK 175 (175)
T d1cdoa2 160 GKDGVPKMVKAYLDKK 175 (175)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7788999999999875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=4.4e-29 Score=184.41 Aligned_cols=164 Identities=23% Similarity=0.343 Sum_probs=142.3
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 122 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~ 122 (255)
++++++|+++|+++|||+++ ++.++++|++|+|+|+|++|++++|+++.+|+ +|++++++++++++++++|+++++|+
T Consensus 1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~ 78 (166)
T d1llua2 1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA 78 (166)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence 47899999999999999987 66899999999999999999999999999998 99999999999999999999999999
Q ss_pred CCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCC
Q 025257 123 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF 201 (255)
Q Consensus 123 ~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 201 (255)
.+ +++.+.+.+.+. ++|.++++++++..++.++++++++ |+++.+|... .+.+++...++. ++++.|+..+.
T Consensus 79 ~~--~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~~~i~Gs~~~~- 151 (166)
T d1llua2 79 RQ--EDPVEAIQRDIG-GAHGVLVTAVSNSAFGQAIGMARRG-GTIALVGLPP--GDFPTPIFDVVLKGLHIAGSIVGT- 151 (166)
T ss_dssp TT--SCHHHHHHHHHS-SEEEEEECCSCHHHHHHHHTTEEEE-EEEEECCCCS--SEEEEEHHHHHHTTCEEEECCSCC-
T ss_pred cc--hhHHHHHHHhhc-CCcccccccccchHHHHHHHHhcCC-cEEEEEEecC--CCccCCHHHHHhCCcEEEEEeecC-
Confidence 88 888888887765 4666666777777799999999997 9999999754 355677777655 99999987553
Q ss_pred CccCcHHHHHHHHHcC
Q 025257 202 KSRSQVPWLVDKYMKK 217 (255)
Q Consensus 202 ~~~~~~~~~~~~~~~~ 217 (255)
+++++++++++++|
T Consensus 152 --~~d~~e~l~l~~~G 165 (166)
T d1llua2 152 --RADLQEALDFAGEG 165 (166)
T ss_dssp --HHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHCc
Confidence 36899999999887
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.96 E-value=4.6e-29 Score=185.24 Aligned_cols=164 Identities=22% Similarity=0.369 Sum_probs=141.5
Q ss_pred cccccccccchhhhhhHHHhhc-CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCC
Q 025257 45 LDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 123 (255)
Q Consensus 45 ~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 123 (255)
+.++|+++++++|||+++.+.. .++||++|+|+|+|++|++++|+++.+|+.+|++++++++|++.++++|++++++++
T Consensus 6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~ 85 (172)
T d1h2ba2 6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR 85 (172)
T ss_dssp HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence 5678999999999999997765 489999999999999999999999999987888899999999999999999999988
Q ss_pred CCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCC
Q 025257 124 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF 201 (255)
Q Consensus 124 ~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 201 (255)
+ + ..+.+.+.+++ ++|+||||+|++..++.++++++++ |+++.+|... ..+++...++. ++++.|++.+++
T Consensus 86 ~--~-~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~---~~~~~~~~l~~k~~~i~Gs~~~~~ 158 (172)
T d1h2ba2 86 R--D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYGG---ELRFPTIRVISSEVSFEGSLVGNY 158 (172)
T ss_dssp S--C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEE-EEEEECCCSS---CCCCCHHHHHHTTCEEEECCSCCH
T ss_pred c--c-HHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCC-CEEEEEeCcc---cccCCHHHHHhCCcEEEEEEecCH
Confidence 5 4 44556667777 9999999999988799999999997 9999999632 35667666655 999999976543
Q ss_pred CccCcHHHHHHHHHcCC
Q 025257 202 KSRSQVPWLVDKYMKKE 218 (255)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ 218 (255)
++++++++++++|+
T Consensus 159 ---~d~~~~l~l~~~GK 172 (172)
T d1h2ba2 159 ---VELHELVTLALQGK 172 (172)
T ss_dssp ---HHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHHcCC
Confidence 68999999999885
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.9e-28 Score=181.70 Aligned_cols=167 Identities=22% Similarity=0.339 Sum_probs=141.5
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 122 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~ 122 (255)
+|+++||++. ++++||+++ ++.+++++++|+|+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++++
T Consensus 1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~ 78 (171)
T d1pl8a2 1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI 78 (171)
T ss_dssp SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence 4788988775 889999986 77899999999999999999999999999999789999999999999999999999988
Q ss_pred CCCCchHHHHHHhh--cCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeee
Q 025257 123 KDHDKPIQQVLVDL--TDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAF 198 (255)
Q Consensus 123 ~~~~~~~~~~i~~~--~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~ 198 (255)
.+ .+..+..+.. +.+ ++|+||||+|.+..++.++++++++ |+++.+|... .+.+++...++. ++++.|++.
T Consensus 79 ~~--~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~--~~~~~~~~~~~~k~l~i~Gs~~ 153 (171)
T d1pl8a2 79 SK--ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS--EMTTVPLLHAAIREVDIKGVFR 153 (171)
T ss_dssp SS--CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC--SCCCCCHHHHHHTTCEEEECCS
T ss_pred cc--cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCC-CEEEEEecCC--CCCccCHHHHHHCCcEEEEEeC
Confidence 76 5554443332 234 8999999999998899999999997 9999999865 345677777655 999999852
Q ss_pred CCCCccCcHHHHHHHHHcCCCC
Q 025257 199 GGFKSRSQVPWLVDKYMKKEIK 220 (255)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~ 220 (255)
+..+++++++++++|+++
T Consensus 154 ----~~~~~~~al~li~~gkid 171 (171)
T d1pl8a2 154 ----YCNTWPVAISMLASKSVN 171 (171)
T ss_dssp ----CSSCHHHHHHHHHTTSCC
T ss_pred ----CHhHHHHHHHHHHcCCCC
Confidence 236799999999999863
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.96 E-value=1e-28 Score=182.91 Aligned_cols=167 Identities=23% Similarity=0.381 Sum_probs=144.6
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 122 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~ 122 (255)
+|+++||+++++++|||+++ +..+++|+++|||+|+|++|++++|+++..|+ +|++++++++|.++++++|++.++++
T Consensus 1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~ 78 (168)
T d1rjwa2 1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP 78 (168)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence 68999999999999999987 67899999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCC
Q 025257 123 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF 201 (255)
Q Consensus 123 ~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 201 (255)
.+ +++.+.+++.+.+..|++ ++++++..++.++++++++ |+++.+|... .+.+++...++. ++++.|+..+.
T Consensus 79 ~~--~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~a~~~l~~~-G~i~~~g~~~--~~~~~~~~~~~~~~~~i~gs~~~~- 151 (168)
T d1rjwa2 79 LK--EDAAKFMKEKVGGVHAAV-VTAVSKPAFQSAYNSIRRG-GACVLVGLPP--EEMPIPIFDTVLNGIKIIGSIVGT- 151 (168)
T ss_dssp TT--SCHHHHHHHHHSSEEEEE-ESSCCHHHHHHHHHHEEEE-EEEEECCCCS--SEEEEEHHHHHHTTCEEEECCSCC-
T ss_pred cc--chhhhhcccccCCCceEE-eecCCHHHHHHHHHHhccC-CceEeccccc--CCCCCCHHHHHHCCcEEEEEeeCC-
Confidence 98 899999998887644544 5556666699999999997 9999999854 455666666655 99999986543
Q ss_pred CccCcHHHHHHHHHcCCCC
Q 025257 202 KSRSQVPWLVDKYMKKEIK 220 (255)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~ 220 (255)
+++++++++++++|+++
T Consensus 152 --~~~~~~~l~l~~~Gkik 168 (168)
T d1rjwa2 152 --RKDLQEALQFAAEGKVK 168 (168)
T ss_dssp --HHHHHHHHHHHHTTSCC
T ss_pred --HHHHHHHHHHHHhCCCC
Confidence 46899999999999863
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=99.96 E-value=8.9e-29 Score=185.36 Aligned_cols=164 Identities=19% Similarity=0.189 Sum_probs=136.7
Q ss_pred cccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCc
Q 025257 49 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 127 (255)
Q Consensus 49 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~ 127 (255)
++++++++|||+++.+..+++||++|||+|+ |++|++++|+++..|+ +|+++++++++.++++++|+++++++++ +
T Consensus 8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~--~ 84 (182)
T d1v3va2 8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT--V 84 (182)
T ss_dssp TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--C
T ss_pred HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc--c
Confidence 4677899999999999999999999999987 8999999999999999 9999999999999999999999999988 8
Q ss_pred hHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCC-----CCccccCchhhcc-CcEEEEeeeCC
Q 025257 128 PIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS-----GQEISTRPFQLVT-GRVWKGTAFGG 200 (255)
Q Consensus 128 ~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-----~~~~~~~~~~~~~-~~~~~g~~~~~ 200 (255)
++.+.+.+.+.+ ++|+|||++|++. ++..+++++++ |+++.+|..+. ..+..++...++. ++++.|++...
T Consensus 85 ~~~~~~~~~~~~~Gvd~v~D~vG~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~ 162 (182)
T d1v3va2 85 NSLEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYR 162 (182)
T ss_dssp SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGG
T ss_pred cHHHHHHHHhhcCCCceeEEecCchh-hhhhhhhccCC-CeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEec
Confidence 888888777777 9999999999876 99999999997 99999986432 1222344444544 99999998766
Q ss_pred CCc---cCcHHHHHHHHHcC
Q 025257 201 FKS---RSQVPWLVDKYMKK 217 (255)
Q Consensus 201 ~~~---~~~~~~~~~~~~~~ 217 (255)
+.. .+.++++++++++|
T Consensus 163 ~~~~~~~~~~~~l~~~i~~G 182 (182)
T d1v3va2 163 WQGDVREKALRDLMKWVLEG 182 (182)
T ss_dssp CCHHHHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHHHHHhCc
Confidence 542 13456667776654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=99.96 E-value=9.6e-28 Score=177.84 Aligned_cols=166 Identities=22% Similarity=0.307 Sum_probs=137.7
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 122 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~ 122 (255)
+|+|+||++. ++++||+++ ++.++++|++|+|+|+|++|++++|+++.+|+ +|++++++++|++.++++|++..++.
T Consensus 1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~ 77 (170)
T d1e3ja2 1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV 77 (170)
T ss_dssp SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence 4788998875 789999986 77899999999999999999999999999999 99999999999999999999876644
Q ss_pred CCCCch---HHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeee
Q 025257 123 KDHDKP---IQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAF 198 (255)
Q Consensus 123 ~~~~~~---~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~ 198 (255)
+....+ ..+.+++..++++|+||||+|.+..++.++++++++ |+++.+|... .+.+++...++. ++++.|++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~--~~~~~~~~~~~~k~i~i~gs~~ 154 (170)
T d1e3ja2 78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS--QMVTVPLVNACAREIDIKSVFR 154 (170)
T ss_dssp CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCS--SCCCCCHHHHHTTTCEEEECCS
T ss_pred cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcC-CceEEEecCC--CCCCcCHHHHHHCCCEEEEEEC
Confidence 332233 344555555559999999999998899999999997 9999999864 345677776665 999998752
Q ss_pred CCCCccCcHHHHHHHHHcCC
Q 025257 199 GGFKSRSQVPWLVDKYMKKE 218 (255)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~ 218 (255)
+.++++++++++++|+
T Consensus 155 ----~~~~~~~ai~li~~Gk 170 (170)
T d1e3ja2 155 ----YCNDYPIALEMVASGR 170 (170)
T ss_dssp ----CSSCHHHHHHHHHTTS
T ss_pred ----CHHHHHHHHHHHHcCC
Confidence 2357999999999885
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2e-28 Score=181.03 Aligned_cols=163 Identities=23% Similarity=0.330 Sum_probs=133.9
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 122 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~ 122 (255)
.+++.+|+++|+..|+|+++ +..+++||++|+|+|+|++|++++|+++.+|+ ++++++++++++++++++|+++++|+
T Consensus 4 ~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~ 81 (168)
T d1uufa2 4 EQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNS 81 (168)
T ss_dssp GGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEET
T ss_pred ccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEEC
Confidence 55677888999999999987 67999999999999999999999999999999 88999999999999999999999998
Q ss_pred CCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCC
Q 025257 123 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF 201 (255)
Q Consensus 123 ~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 201 (255)
.+ ++..... .+++|++||++|.+..++..+++++++ |+++.+|.... ....++...++. ++++.|+..++.
T Consensus 82 ~~--~~~~~~~----~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~l~~k~~~i~Gs~~~~~ 153 (168)
T d1uufa2 82 RN--ADEMAAH----LKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPAT-PHKSPEVFNLIMKRRAIAGSMIGGI 153 (168)
T ss_dssp TC--HHHHHTT----TTCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEEECCSCCH
T ss_pred ch--hhHHHHh----cCCCceeeeeeecchhHHHHHHHHhcC-CEEEEeccCCC-CcccccHHHHHHCCcEEEEEeecCH
Confidence 86 5432211 128999999999887799999999997 99999997543 333456555554 999999876543
Q ss_pred CccCcHHHHHHHHHcCC
Q 025257 202 KSRSQVPWLVDKYMKKE 218 (255)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ 218 (255)
.+++++++++.+++
T Consensus 154 ---~d~~e~l~l~a~~~ 167 (168)
T d1uufa2 154 ---PETQEMLDFCAEHG 167 (168)
T ss_dssp ---HHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHcC
Confidence 68999999998765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.9e-28 Score=181.09 Aligned_cols=164 Identities=19% Similarity=0.223 Sum_probs=135.2
Q ss_pred CcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCC
Q 025257 44 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 123 (255)
Q Consensus 44 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 123 (255)
+.+.||++.|++.|||+++ ++.+++||++|+|+|+|++|++++|+++.+|+ +|++++++++|++.++++|+++++++.
T Consensus 2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~ 79 (168)
T d1piwa2 2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATL 79 (168)
T ss_dssp CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeecc
Confidence 4577889999999999987 57899999999999999999999999999999 999999999999999999999999876
Q ss_pred CCCchHHHHHHhhcCCCccEEEecCCcHH--HHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCC
Q 025257 124 DHDKPIQQVLVDLTDGGVDYSFECIGNVS--VMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGG 200 (255)
Q Consensus 124 ~~~~~~~~~i~~~~~~~~d~v~d~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~ 200 (255)
+ +.++.+.. .+++|+++||++... .++..+++++++ |+++.+|.... ..+++..+++. ++++.|+..++
T Consensus 80 ~-~~~~~~~~----~~~~d~vi~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~k~~~i~Gs~~g~ 151 (168)
T d1piwa2 80 E-EGDWGEKY----FDTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ--HEMLSLKPYGLKAVSISYSALGS 151 (168)
T ss_dssp G-TSCHHHHS----CSCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS--SCCEEECGGGCBSCEEEECCCCC
T ss_pred c-hHHHHHhh----hcccceEEEEecCCccchHHHHHHHhhcc-ceEEEeccccc--cccccHHHHHhCCcEEEEEeeCC
Confidence 5 13333322 237999999988643 367889999997 99999997553 34555555555 99999987654
Q ss_pred CCccCcHHHHHHHHHcCCCC
Q 025257 201 FKSRSQVPWLVDKYMKKEIK 220 (255)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~ 220 (255)
+++++++++++++|+++
T Consensus 152 ---~~~~~e~l~li~~gkIk 168 (168)
T d1piwa2 152 ---IKELNQLLKLVSEKDIK 168 (168)
T ss_dssp ---HHHHHHHHHHHHHTTCC
T ss_pred ---HHHHHHHHHHHHhCCCC
Confidence 36899999999999863
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=1.6e-28 Score=181.87 Aligned_cols=146 Identities=22% Similarity=0.296 Sum_probs=120.2
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 121 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~ 121 (255)
+|+++||+++++++|||+++ +..+++||++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|+++++|
T Consensus 1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~ 78 (171)
T d1iz0a2 1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT 78 (171)
T ss_dssp CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence 58899999999999999988 5689999999999997 9999999999999999 9999999999999999999999998
Q ss_pred CCCCCchHHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeC
Q 025257 122 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFG 199 (255)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~ 199 (255)
+.+ . ..+.+.+ ++|+|||++| +. ++.++++++++ |+++.+|..++ ...+++...++. ++++.|+++.
T Consensus 79 ~~~----~---~~~~~~~~g~D~v~d~~G-~~-~~~~~~~l~~~-G~~v~~G~~~g-~~~~~~~~~~~~k~~~i~g~~~~ 147 (171)
T d1iz0a2 79 YAE----V---PERAKAWGGLDLVLEVRG-KE-VEESLGLLAHG-GRLVYIGAAEG-EVAPIPPLRLMRRNLAVLGFWLT 147 (171)
T ss_dssp GGG----H---HHHHHHTTSEEEEEECSC-TT-HHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCHH
T ss_pred hhh----h---hhhhhccccccccccccc-hh-HHHHHHHHhcC-CcEEEEeCCCC-CCCCccHHHHHHCCcEEEEEeCc
Confidence 764 2 2334445 8999999988 45 89999999996 99999998643 345666666555 9999999765
Q ss_pred CC
Q 025257 200 GF 201 (255)
Q Consensus 200 ~~ 201 (255)
.+
T Consensus 148 ~~ 149 (171)
T d1iz0a2 148 PL 149 (171)
T ss_dssp HH
T ss_pred Ch
Confidence 44
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=99.94 E-value=9.8e-28 Score=180.57 Aligned_cols=172 Identities=13% Similarity=0.160 Sum_probs=136.0
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCCCEEEEE-cC-ChHHHHHHHHHHHcCCCeEEEEcCCcch----HHHHHhcCC
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-GL-GTVGLAVAEGAKAAGASRVIGIDIDPKK----FDRAKNFGV 116 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~-G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~----~~~~~~~g~ 116 (255)
+|+++||+++++++|||++|.+..+++||++|+|+ |+ |++|++++|+||.+|+ +||++++++++ .++++++|+
T Consensus 1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa 79 (189)
T d1gu7a2 1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA 79 (189)
T ss_dssp CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence 58999999999999999999999999999999887 65 8999999999999999 99999866543 456789999
Q ss_pred cEEeCCCC-CCchHHHHHHhhc---CCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-Cc
Q 025257 117 TEFVNPKD-HDKPIQQVLVDLT---DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GR 191 (255)
Q Consensus 117 ~~vi~~~~-~~~~~~~~i~~~~---~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~ 191 (255)
++++++++ ...++.+.+++.+ ++++|++||++|++. ++.++++++++ |+++.+|.... .+.+++...++. ++
T Consensus 80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~-~~~~~~~l~~~-G~~v~~G~~~~-~~~~~~~~~l~~k~~ 156 (189)
T d1gu7a2 80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNN-GLMLTYGGMSF-QPVTIPTSLYIFKNF 156 (189)
T ss_dssp SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTT-CEEEECCCCSS-CCEEECHHHHHHSCC
T ss_pred cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcch-hhhhhhhhcCC-cEEEEECCccC-CCccCcHHHHHHCCc
Confidence 99998753 0133444555443 348999999999888 89999999997 99999997643 456677666654 99
Q ss_pred EEEEeeeCCCCc------cCcHHHHHHHHHcCC
Q 025257 192 VWKGTAFGGFKS------RSQVPWLVDKYMKKE 218 (255)
Q Consensus 192 ~~~g~~~~~~~~------~~~~~~~~~~~~~~~ 218 (255)
++.|++++.+.. .+.++++++++++|+
T Consensus 157 ~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 189 (189)
T d1gu7a2 157 TSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK 189 (189)
T ss_dssp EEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence 999987654321 134667777777764
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=5.4e-27 Score=176.10 Aligned_cols=171 Identities=18% Similarity=0.178 Sum_probs=129.0
Q ss_pred CCcccccccccchhhhhhHHHhhcCCCCC--CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE
Q 025257 43 APLDKVCLLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE 118 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~ 118 (255)
+|+.+.| +++++.|||+++.+..+++++ ++|||+|+ |++|++++|+||..|+.+|+++++++++...+ +++|+++
T Consensus 2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~ 80 (187)
T d1vj1a2 2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA 80 (187)
T ss_dssp GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence 4666654 677899999999999999987 88999986 99999999999999995566667776666555 6899999
Q ss_pred EeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCC---Ccc--ccC---ch-hhcc
Q 025257 119 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG---QEI--STR---PF-QLVT 189 (255)
Q Consensus 119 vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~---~~~--~~~---~~-~~~~ 189 (255)
++|+++ +++.+.+++.++.++|+|||++|++. ++.++++++++ |+++.+|..+.. .+. +.. .. ...+
T Consensus 81 vi~~~~--~~~~~~~~~~~~~GvDvv~D~vGg~~-~~~~~~~l~~~-G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k 156 (187)
T d1vj1a2 81 AVNYKT--GNVAEQLREACPGGVDVYFDNVGGDI-SNTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPPAVEAIRKER 156 (187)
T ss_dssp EEETTS--SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEE-EEEEEC------------CCCCCHHHHHHHHHT
T ss_pred Eeeccc--hhHHHHHHHHhccCceEEEecCCchh-HHHHhhhcccc-ccEEEeccccccccccccCCchHHHHHHHHHhc
Confidence 999998 99999999998769999999999887 99999999997 999999975321 111 111 11 1234
Q ss_pred CcEEEEeeeCCCCc--cCcHHHHHHHHHcCC
Q 025257 190 GRVWKGTAFGGFKS--RSQVPWLVDKYMKKE 218 (255)
Q Consensus 190 ~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~ 218 (255)
++++.|+.+..+.+ .+.++++.+++++|+
T Consensus 157 ~i~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk 187 (187)
T d1vj1a2 157 NITRERFTVLNYKDKFEPGILQLSQWFKEGK 187 (187)
T ss_dssp TCEEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred ceEEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence 88888887655432 234566666777664
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=2e-25 Score=168.05 Aligned_cols=166 Identities=26% Similarity=0.291 Sum_probs=134.8
Q ss_pred ccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCC
Q 025257 46 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 125 (255)
Q Consensus 46 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~ 125 (255)
++.++++.+++|||+++ +.+++++|++|||+|+|++|++++++++.+|+.+|++++.+++|++.++++|+++++++.+
T Consensus 2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~- 79 (195)
T d1kola2 2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD- 79 (195)
T ss_dssp HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-
T ss_pred chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-
Confidence 46677888999999996 7799999999999999999999999999999989999999999999999999999999988
Q ss_pred CchHHHHHHhhcCC-CccEEEecCCc---------------HHHHHHHHHHhccCCceEEEEccCCCCCccc--------
Q 025257 126 DKPIQQVLVDLTDG-GVDYSFECIGN---------------VSVMRAALECCHKGWGTSVIVGVAASGQEIS-------- 181 (255)
Q Consensus 126 ~~~~~~~i~~~~~~-~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-------- 181 (255)
+++.+.+.+.|++ ++|++||++|. +..++.++++++++ |+++.+|.+....+..
T Consensus 80 -~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~G~~~~~~~~~~~~~~~~~ 157 (195)
T d1kola2 80 -TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIG 157 (195)
T ss_dssp -SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCCTTCSSHHHHTT
T ss_pred -cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEeeecCCCcccchhhhhhcC
Confidence 9999999999988 99999999984 34599999999996 9999999865433222
Q ss_pred ---cCchhhc-cCcEEEEeeeCCCCccCcHHHHHHHHHcCC
Q 025257 182 ---TRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 218 (255)
Q Consensus 182 ---~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 218 (255)
++...++ +++++.+ +....+++++++++++.+++
T Consensus 158 ~~~~~~~~~~~k~~~i~~---g~~~v~~~~~~Ll~~I~~~k 195 (195)
T d1kola2 158 SLSIRFGLGWAKSHSFHT---GQTPVMKYNRALMQAIMWDR 195 (195)
T ss_dssp CCCCCHHHHHHTTCEEEE---SSCCHHHHHHHHHHHHHTTS
T ss_pred ceeeeHHHHHhhcceecc---CCCchHHHHHHHHHHHHcCC
Confidence 2222222 3555532 33333356777888877654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1e-25 Score=166.66 Aligned_cols=148 Identities=15% Similarity=0.183 Sum_probs=122.7
Q ss_pred CCcccccccccchhhhhhHHH---hhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE
Q 025257 43 APLDKVCLLGCGVPTGLGAVW---NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 118 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~ 118 (255)
+++.+||++++++.|||+++. +....+++++|||+|+ |++|++++|+||.+|+ +|+++++++++.+.++++|+++
T Consensus 1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~ 79 (177)
T d1o89a2 1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR 79 (177)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence 578899999999999997753 3444556679999987 9999999999999999 9999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEee
Q 025257 119 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTA 197 (255)
Q Consensus 119 vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~ 197 (255)
++|+++ .++.+.+ ....+|.++|++|++. +...+++++++ |+++.+|...+ ...+++..+++. ++++.|++
T Consensus 80 vi~~~~--~~~~~~l---~~~~~~~vvD~Vgg~~-~~~~l~~l~~~-Griv~~G~~~~-~~~~~~~~~~~~k~~~i~G~~ 151 (177)
T d1o89a2 80 VLPRDE--FAESRPL---EKQVWAGAIDTVGDKV-LAKVLAQMNYG-GCVAACGLAGG-FTLPTTVMPFILRNVRLQGVD 151 (177)
T ss_dssp EEEGGG--SSSCCSS---CCCCEEEEEESSCHHH-HHHHHHTEEEE-EEEEECCCTTC-SCCCCCSHHHHHHCCEEEECC
T ss_pred cccccc--HHHHHHH---HhhcCCeeEEEcchHH-HHHHHHHhccc-cceEeecccCC-ccccccHHHHHHCCCeEEEEe
Confidence 999876 4443222 2236899999999988 99999999997 99999998754 445667666655 99999986
Q ss_pred eC
Q 025257 198 FG 199 (255)
Q Consensus 198 ~~ 199 (255)
..
T Consensus 152 ~~ 153 (177)
T d1o89a2 152 SV 153 (177)
T ss_dssp SS
T ss_pred cc
Confidence 54
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=5.9e-25 Score=161.05 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=119.8
Q ss_pred cchhhhhhH---HHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCch
Q 025257 53 CGVPTGLGA---VWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP 128 (255)
Q Consensus 53 ~~~~ta~~~---l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~ 128 (255)
+++.|||.+ |.+....+++++|||+|+ |+||.+++|+||.+|+ +|++++++++|.++++++|+++++++++
T Consensus 3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~---- 77 (167)
T d1tt7a2 3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED---- 77 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH----
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc----
Confidence 345677644 556666778889999987 9999999999999999 9999999999999999999999987642
Q ss_pred HHHHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccCCCCCccccCchhhcc-CcEEEEeeeCCCCccCc
Q 025257 129 IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQ 206 (255)
Q Consensus 129 ~~~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~ 206 (255)
+..+....+.+ ++|+|+|++|++. ++.++++++++ |+++.+|...+ ...+++...++. ++++.|+..... +.+.
T Consensus 78 ~~~~~~~~~~~~gvd~vid~vgg~~-~~~~~~~l~~~-G~iv~~G~~~g-~~~~~~~~~l~~k~~~i~G~~~~~~-~~~~ 153 (167)
T d1tt7a2 78 VYDGTLKALSKQQWQGAVDPVGGKQ-LASLLSKIQYG-GSVAVSGLTGG-GEVPATVYPFILRGVSLLGIDSVYC-PMDV 153 (167)
T ss_dssp HCSSCCCSSCCCCEEEEEESCCTHH-HHHHHTTEEEE-EEEEECCCSSC-SCEEECSHHHHTSCCEEEECCSSSC-CHHH
T ss_pred hhchhhhcccCCCceEEEecCcHHH-HHHHHHHhccC-ceEEEeeccCC-CcccCCHHHHHHCCcEEEEEecCCC-CHHH
Confidence 22223333444 9999999999998 99999999997 99999998754 456777776655 999999754322 2234
Q ss_pred HHHHHHHHH
Q 025257 207 VPWLVDKYM 215 (255)
Q Consensus 207 ~~~~~~~~~ 215 (255)
..++++.+.
T Consensus 154 ~~~~~~~l~ 162 (167)
T d1tt7a2 154 RAAVWERMS 162 (167)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 455555543
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=3.9e-17 Score=102.01 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=66.4
Q ss_pred CCcccccccccchhhhhhHHH---hhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025257 43 APLDKVCLLGCGVPTGLGAVW---NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 116 (255)
Q Consensus 43 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~ 116 (255)
+|+++|+.+++++.|||.++. +....+++++|||+|+ |++|.+++|+++..|+ +|+++++++++.++++++|+
T Consensus 1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA 77 (77)
T d1o8ca2 1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA 77 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence 578999999999999998754 4566789999999987 9999999999999999 99999999999999999885
|
| >d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=4.2e-13 Score=95.76 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=68.4
Q ss_pred CCCCCCccccCCccccccc-CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 2 MNDRKSRFSINGKPIYHFM-GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~~~~-~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
+|+++++|++ ||+|++.. .+|+|+||+.+++++++++|+++++++||+++++..|+|+++...+..++|+++||+
T Consensus 75 vG~~v~~~~v-GdrV~~~~~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL 150 (150)
T d1yb5a1 75 VGDNASAFKK-GDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL 150 (150)
T ss_dssp ECTTCTTCCT-TCEEEESCCSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred ecceeecccc-CccccccccccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence 4678999999 99998654 459999999999999999999999999999999999999999899999999999984
|
| >d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=99.34 E-value=1.8e-13 Score=100.73 Aligned_cols=75 Identities=9% Similarity=0.103 Sum_probs=65.5
Q ss_pred CCCCCccccCCcccccc----------------------------cCccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 3 NDRKSRFSINGKPIYHF----------------------------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~----------------------------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
|.++.+|++ ||+|+.. ..+|+||||+++|+++++++|++++++++|+++++
T Consensus 73 G~~v~~~~~-GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~ 151 (178)
T d1e3ja1 73 GKNVKHLKK-GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFK 151 (178)
T ss_dssp CTTCCSCCT-TCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEE
T ss_pred CcccCCCCC-CCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhH
Confidence 667888888 8888521 23489999999999999999999999999999999
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcC
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGL 79 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~ 79 (255)
+.|||+++ +.+++++|++|+|+|+
T Consensus 152 ~~ta~~a~-~~~~~~~g~~VlVig~ 175 (178)
T d1e3ja1 152 LEQTVDAF-EAARKKADNTIKVMIS 175 (178)
T ss_dssp GGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred HHHHHHHH-HHhCCCCCCEEEEEcc
Confidence 99999986 7889999999999974
|
| >d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=9.8e-13 Score=91.37 Aligned_cols=72 Identities=8% Similarity=0.093 Sum_probs=62.0
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
|...++.-+ ||+|+++..+|+|+||+.+++++++++|+++++++||++++++.|||++|.+++ +.|++||++
T Consensus 60 G~E~~G~Vv-Gd~V~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l 131 (131)
T d1iz0a1 60 GMEVVGVVE-GRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL 131 (131)
T ss_dssp CCEEEEEET-TEEEEEECSSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred eeeeEEeec-cceEEEEeccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence 444445445 999999888899999999999999999999999999999999999999987766 458888863
|
| >d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.20 E-value=9.1e-12 Score=90.70 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=60.6
Q ss_pred CCCCCccccCCccccc---------------------------ccCccceeeEEEEcCCceEEcCCCCCcccccccccch
Q 025257 3 NDRKSRFSINGKPIYH---------------------------FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 55 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~---------------------------~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~ 55 (255)
|+++.++++ ||+|+. +..+|+||||+.+++++++++|++++++.++++.+++
T Consensus 73 G~~v~~~~~-GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~ 151 (171)
T d1h2ba1 73 AEGVEGLEK-GDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEI 151 (171)
T ss_dssp CTTCCSCCT-TCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGH
T ss_pred cCCCCcCCC-CCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHHHHHhHH
Confidence 667778888 888753 2234899999999999999999999999888888899
Q ss_pred hhhhhHHHhhcCCCCCCEEEE
Q 025257 56 PTGLGAVWNTAKVEPGSIVAV 76 (255)
Q Consensus 56 ~ta~~~l~~~~~~~~~~~vlI 76 (255)
.|||+++ +...+ .|++|||
T Consensus 152 ~ta~~al-~~~~~-~G~~VlI 170 (171)
T d1h2ba1 152 NDVLERL-EKGEV-LGRAVLI 170 (171)
T ss_dssp HHHHHHH-HTTCC-SSEEEEE
T ss_pred HHHHHHH-HhcCC-CCCEEEe
Confidence 9999987 66777 8999998
|
| >d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.7e-11 Score=86.97 Aligned_cols=73 Identities=8% Similarity=0.070 Sum_probs=60.1
Q ss_pred CCCCCCccccCCcccc-cccCccceeeEEEEcCCceEEcCCCCCcccc--cccccchhhhhhHHHhhcCCCCCCEEEE
Q 025257 2 MNDRKSRFSINGKPIY-HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV--CLLGCGVPTGLGAVWNTAKVEPGSIVAV 76 (255)
Q Consensus 2 ~g~~~~~~~~~g~~v~-~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~a--a~~~~~~~ta~~~l~~~~~~~~~~~vlI 76 (255)
+|.++.+|++ ||+|+ .....|+|+||++++++.++++|++++++++ ++++....|+++++.+ .++++|++|||
T Consensus 71 vG~~v~~~~v-GdrV~~~~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI 146 (147)
T d1qora1 71 VGSGVKHIKA-GDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI 146 (147)
T ss_dssp ECTTCCSCCT-TCEEEESCCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred eeeecccccc-cceeeeeccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence 3678899999 99996 4456799999999999999999999988755 4456666777777654 68999999998
|
| >d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.17 E-value=6.5e-12 Score=89.70 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=60.9
Q ss_pred CCCCccccCCcccccc------cCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 4 DRKSRFSINGKPIYHF------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 4 ~~~~~~~~~g~~v~~~------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
+++..|++ ||+|++. ..+|+||||+.+|+++++++|++++ ++||+++++..||+.++....+++ |++|||+
T Consensus 75 ~~~~~~~~-g~~v~~~~~~~~~~~~G~~aEy~~v~~~~~~~iP~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l 151 (152)
T d1xa0a1 75 SQHPRFRE-GDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRL 151 (152)
T ss_dssp CCSSSCCT-TCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEEC
T ss_pred cCCCcccc-CCEEEEecCccccccCCCcceeeeehhhccccCCCCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEc
Confidence 45677888 8888643 2359999999999999999999998 468889989999999888888886 9999997
Q ss_pred c
Q 025257 78 G 78 (255)
Q Consensus 78 G 78 (255)
|
T Consensus 152 ~ 152 (152)
T d1xa0a1 152 A 152 (152)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=99.02 E-value=1.4e-10 Score=86.44 Aligned_cols=57 Identities=37% Similarity=0.367 Sum_probs=53.4
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
.+|+||||+++++.+++++|++++++++|++.+++.|+++++....+.+.|++|||+
T Consensus 143 ~~Ggfaey~~v~~~~~~~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~ 199 (199)
T d1cdoa1 143 GTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 199 (199)
T ss_dssp GTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred ccCCceEEEEEchHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence 359999999999999999999999999999999999999999888899999999984
|
| >d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.8e-10 Score=84.83 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=47.0
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCCh
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT 81 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~ 81 (255)
+|+|+||+++++++++++|++++++++++++ +++|++++ +..++++|++||| |+|+
T Consensus 125 ~G~~aey~~~~~~~~~~lP~~~~~~~aa~~p--l~~a~~a~-~~~~~~~G~~VlI-g~GP 180 (185)
T d1pl8a1 125 DGNLCRFYKHNAAFCYKLPDNVKPLVTHRFP--LEKALEAF-ETFKKGLGLKIML-KCDP 180 (185)
T ss_dssp CCSCBSEEEEEGGGEEECCTTCGGGEEEEEE--GGGHHHHH-HHHHTTCCSEEEE-ECCT
T ss_pred cccceEEEEEchHHEEECCCCCCHHHHHHHH--HHHHHHHH-HHhCCCCCCEEEE-EeCC
Confidence 4789999999999999999999999987654 56777765 6778999999998 5554
|
| >d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=98.98 E-value=1.9e-12 Score=93.53 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=60.3
Q ss_pred CCCccccCCcccccc------cCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEc
Q 025257 5 RKSRFSINGKPIYHF------MGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 78 (255)
Q Consensus 5 ~~~~~~~~g~~v~~~------~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G 78 (255)
++.++++ |++|+.. ..+|+||||+.+|+++++++|+++|+++||++++.++|||.++. ..++..+++|||+|
T Consensus 76 ~~~~~~~-g~~v~~~~~~~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~g 153 (162)
T d1tt7a1 76 NDPRFAE-GDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNR 153 (162)
T ss_dssp SSTTCCT-TCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTC
T ss_pred ccccccc-ceeeEeeeccceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEC
Confidence 4566777 8887632 34599999999999999999999999999999999999998753 34455667788887
Q ss_pred C-Ch
Q 025257 79 L-GT 81 (255)
Q Consensus 79 ~-g~ 81 (255)
+ |+
T Consensus 154 a~G~ 157 (162)
T d1tt7a1 154 IQGR 157 (162)
T ss_dssp CSSE
T ss_pred Ccce
Confidence 6 54
|
| >d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=2.1e-10 Score=84.72 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=49.0
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
.+|+||||+++++.+++++|+++++++|+.+...+.|||+++ +.+.+++++.|+|.
T Consensus 131 ~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~ 186 (192)
T d1piwa1 131 SQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY 186 (192)
T ss_dssp CCCSSBSEEEEEGGGEEECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred cccceeeEEEeehHHeEECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence 358999999999999999999999988776665577999987 68999999999875
|
| >d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.94 E-value=4.8e-10 Score=81.74 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=58.2
Q ss_pred CCCCCccccCCccccc----------------------------ccCccceeeEEEEcCCceEEcCCCCCcccccccccc
Q 025257 3 NDRKSRFSINGKPIYH----------------------------FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 54 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~----------------------------~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~ 54 (255)
|.++.++++ ||+|+. +..+|+|+||+++++.+++++|++++++.++++.++
T Consensus 76 G~~v~~~~~-GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~ 154 (175)
T d1llua1 76 GSGVTRVKE-GDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDD 154 (175)
T ss_dssp CTTCCSCCT-TCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGG
T ss_pred CCCcccccc-CCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHHHHHhH
Confidence 567788888 888752 123479999999999999999999999988888889
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEE
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
+.|+++++ +.. ..+|++|||+
T Consensus 155 ~~t~~~~~-~~g-~~~G~~VLVl 175 (175)
T d1llua1 155 INQILDQM-RAG-QIEGRIVLEM 175 (175)
T ss_dssp HHHHHHHH-HTT-CCSSEEEEEC
T ss_pred HHHHHHHH-HhC-CCCCCEEEeC
Confidence 99998865 444 4479999984
|
| >d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=98.90 E-value=1.7e-12 Score=95.15 Aligned_cols=83 Identities=12% Similarity=0.007 Sum_probs=65.3
Q ss_pred CCCCCccccCCccccc-ccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHh-hcCCCCCCEEEEEc-C
Q 025257 3 NDRKSRFSINGKPIYH-FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN-TAKVEPGSIVAVFG-L 79 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~-~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~vlI~G-~ 79 (255)
+.+++.++. |++|+. ....|+|+||+++++.+++++|++++.+.+ +++..+|||+++.. ..+++||++|||.| +
T Consensus 88 ~~~~~~~~~-g~~v~~~~~~~g~~aey~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa 164 (175)
T d1gu7a1 88 GSNVSSLEA-GDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVA 164 (175)
T ss_dssp CTTCCSCCT-TCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHH
T ss_pred ccccccccc-ccceeccccccccccceeeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECcc
Confidence 456777888 888874 345699999999999999999997754444 44578899988754 46799999999997 4
Q ss_pred -ChHHHHHHH
Q 025257 80 -GTVGLAVAE 88 (255)
Q Consensus 80 -g~vG~~a~~ 88 (255)
|++|++++|
T Consensus 165 ~~gvG~~~iQ 174 (175)
T d1gu7a1 165 NSKDGKQLIT 174 (175)
T ss_dssp TGGGSCEEEE
T ss_pred chhhhheEEe
Confidence 679988766
|
| >d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.85 E-value=1.6e-09 Score=78.59 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=43.2
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcC
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL 79 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~ 79 (255)
+|+||||+++++++++++|++++++.|+ +. ...++++.+ ..+.+ +|++|||+|.
T Consensus 117 ~G~~aey~~v~~~~~~~iP~~~~~e~A~-l~-~~~~~~~~~-~~~~~-~G~tVlViG~ 170 (171)
T d1rjwa1 117 DGGYAEYCRAAADYVVKIPDNTIIEVQP-LE-KINEVFDRM-LKGQI-NGRVVLTLED 170 (171)
T ss_dssp CCSSBSEEEEEGGGCEECCTTCCEEEEE-GG-GHHHHHHHH-HTTCC-SSEEEEECCC
T ss_pred cCccccceEecHHHEEECCCCCCHHHHH-HH-HHHHHHHHH-HhcCC-CCCEEEEeCC
Confidence 4899999999999999999999987665 44 456777765 44555 5999999984
|
| >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.72 E-value=6.7e-09 Score=76.66 Aligned_cols=54 Identities=20% Similarity=0.443 Sum_probs=44.7
Q ss_pred cceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 23 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 23 g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
|+|+||+++++.+++++|++++++++ +++.|+|++|++++|+++.+|+.+|+++
T Consensus 140 g~fae~~~v~~~~~~~ip~~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV 193 (194)
T d1f8fa1 140 SSFATYALSRENNTVKVTKDFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI 193 (194)
T ss_dssp CCSBSEEEEEGGGEEEECTTCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred cccceeEEEehHHEEECCCCCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 68999999999999999998876543 3456779999999999999999455543
|
| >d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=5.1e-09 Score=73.67 Aligned_cols=57 Identities=9% Similarity=0.001 Sum_probs=46.3
Q ss_pred CCCccccCCccccc------ccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHH
Q 025257 5 RKSRFSINGKPIYH------FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 62 (255)
Q Consensus 5 ~~~~~~~~g~~v~~------~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l 62 (255)
+...+.. |++++. ...+|+||||+++|+++++++|+++|+++||++++++.||+..+
T Consensus 73 ~~~~~~~-g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~ 135 (146)
T d1o89a1 73 EDPRFHA-GQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN 135 (146)
T ss_dssp CSTTCCT-TCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred ccCCccc-eeeEEeecccceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3445666 787763 23459999999999999999999999999999998888886543
|
| >d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=98.70 E-value=6.6e-09 Score=76.92 Aligned_cols=64 Identities=39% Similarity=0.419 Sum_probs=53.3
Q ss_pred cccccccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 14 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 14 ~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
..+.++.++|+||||+++++.+++++|+.++++++|.+.+++.|++.++.....-+.+++|||+
T Consensus 134 ~~v~~~~g~GgfAey~vvp~~~~~~vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi 197 (197)
T d2fzwa1 134 KTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 197 (197)
T ss_dssp EEEBCCTTTCCSBSEEEEEGGGEEECCTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred cceecccccccceeEEEechHHEEECCCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence 3344455569999999999999999999999999999999999999987555555678888874
|
| >d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.63 E-value=1.1e-11 Score=92.42 Aligned_cols=69 Identities=17% Similarity=0.110 Sum_probs=53.6
Q ss_pred ccceeeEEEEcCC--ceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC
Q 025257 22 TSTFSQYTVVHDV--SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 95 (255)
Q Consensus 22 ~g~~ae~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~ 95 (255)
+|+|+||+++|.. +++++|++.+..+++++..++.++++++ .....+.+ ++|+|++|+.++|.||.+|+
T Consensus 131 ~Gg~aeyv~vp~~~~~l~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g----~~g~G~vG~~~i~~ak~~GA 201 (201)
T d1kola1 131 TGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYG----EFDAGVPKKFVIDPHKTFSA 201 (201)
T ss_dssp CCCSBSEEEESSHHHHCEECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred ccccccEEEeehHHCeEEECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCe----EEeeCHHHHHHHHHHHHcCC
Confidence 4899999999863 6999999877667676766888888875 33444444 25889999999999998885
|
| >d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=98.60 E-value=1.3e-08 Score=75.64 Aligned_cols=53 Identities=26% Similarity=0.336 Sum_probs=45.3
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
.|+||||+++++.+++++|++++++.++++.+++.++++++.. +++|++|.|.
T Consensus 147 ~G~faey~~v~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~~---~k~G~~V~vi 199 (202)
T d1e3ia1 147 VSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESINDAIDL---MKEGKSIRTI 199 (202)
T ss_dssp TCCSBSEEEEEGGGEEECCTTSCGGGGEEEEEEGGGHHHHHHH---HHTTCCSEEE
T ss_pred cCCceEEEEEehhhEEECCCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCEEEEE
Confidence 4899999999999999999999999988888888888887632 4678888765
|
| >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=98.52 E-value=3.3e-08 Score=72.08 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=42.1
Q ss_pred ccceeeEEEEc-CCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEc
Q 025257 22 TSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 78 (255)
Q Consensus 22 ~g~~ae~~~v~-~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G 78 (255)
+|+||||++++ +.+++++|++++.++ ++.+|++++ +.+.+++|++|||+.
T Consensus 133 ~Gg~ae~~~v~~~~~v~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~~ 183 (184)
T d1vj0a1 133 RGCYSSHIVLDPETDVLKVSEKITHRL------PLKEANKAL-ELMESREALKVILYP 183 (184)
T ss_dssp CSSSBSEEEECTTCCEEEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEEC
T ss_pred ceeCcCcEEechhHcEEECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEee
Confidence 58999999996 578999999998753 456788876 778999999999983
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.42 E-value=5.3e-07 Score=63.61 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=74.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--EEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
+..+|+|+|+|.+|+.+++.|+.+|+ .|.+++.+.++.+.+++.... ......+ +.+.+.++ .+|+|+.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~--~~l~~~~~-----~aDivI~a 102 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS--AEIETAVA-----EADLLIGA 102 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH--HHHHHHHH-----TCSEEEEC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhhh--hhHHHhhc-----cCcEEEEe
Confidence 34789999999999999999999999 999999999999998765421 2222222 45655555 48999987
Q ss_pred CCcHH------HHHHHHHHhccCCceEEEEccCCC
Q 025257 148 IGNVS------VMRAALECCHKGWGTSVIVGVAAS 176 (255)
Q Consensus 148 ~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~ 176 (255)
+--+- .-++.++.|+++ +.++.+..-.+
T Consensus 103 alipG~~aP~lIt~~mv~~Mk~G-SVIVDvaidqG 136 (168)
T d1pjca1 103 VLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQG 136 (168)
T ss_dssp CCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTC
T ss_pred eecCCcccCeeecHHHHhhcCCC-cEEEEeecCCC
Confidence 75321 247889999997 99999976443
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.35 E-value=1.1e-06 Score=62.80 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=74.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeC-CCC---C--------------CchHHH
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN-PKD---H--------------DKPIQQ 131 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~---~--------------~~~~~~ 131 (255)
|..+|+|+|+|.+|+.+++.|+.+|+ +|.+++.++++++.+++++...+.- ... . .....+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 34689999999999999999999999 9999999999999999998754411 000 0 001122
Q ss_pred HHHhhcCCCccEEEecCCcHH------HHHHHHHHhccCCceEEEEccCC
Q 025257 132 VLVDLTDGGVDYSFECIGNVS------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 132 ~i~~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
.+.+... ..|+|+-++--+- .-++.++.|++| +.++.+..-.
T Consensus 107 ~l~~~l~-~aDlVI~talipG~~aP~lit~~mv~~Mk~G-SVIVDvaidq 154 (183)
T d1l7da1 107 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEA 154 (183)
T ss_dssp HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGG
T ss_pred HHHHHHH-hhhhheeeeecCCcccceeehHHHHHhcCCC-cEEEEEeecC
Confidence 2333222 5899997665321 257889999997 9999996543
|
| >d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.32 E-value=4.4e-07 Score=65.68 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=37.6
Q ss_pred ccceeeEEEEcCCc-eEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEE
Q 025257 22 TSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 76 (255)
Q Consensus 22 ~g~~ae~~~v~~~~-~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI 76 (255)
+|+||||+++++.+ ++++|+..+.+.++....++.+|++++ +..++ .|++|||
T Consensus 123 ~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI 176 (177)
T d1jvba1 123 DGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI 176 (177)
T ss_dssp CCSSBSEEEESCGGGEEECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred ccccccEEEEEhHHeEEECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence 48999999998765 556666444444444455788999876 55665 5889987
|
| >d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=98.25 E-value=8.6e-09 Score=74.86 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=38.5
Q ss_pred ccceeeEEEEcC--CceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHH
Q 025257 22 TSTFSQYTVVHD--VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAV 86 (255)
Q Consensus 22 ~g~~ae~~~v~~--~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a 86 (255)
+|+|+||+++|. .+++++|+++++++++... .+++..+ ++.++|+|+|++|+.+
T Consensus 117 ~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~---~~~~~~~--------~~~vlv~g~gp~gl~a 172 (177)
T d1jqba1 117 DGVFGEYFHVNDADMNLAILPKDVDLSKLVTHV---YHGFDHI--------EEALLLMKDKPKDLIK 172 (177)
T ss_dssp CCSSBSSEEESSHHHHCEECCTTSCGGGGEEEE---EESGGGH--------HHHHHHHHHCCTTCSE
T ss_pred ChhcCeeEEEEhhhCeEEECCCCcchHHHHHHH---HHHHHHh--------cCceEEECCCHHHhhe
Confidence 489999999996 3689999999988765433 2333332 2347788888877654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=5.6e-06 Score=63.02 Aligned_cols=105 Identities=25% Similarity=0.237 Sum_probs=73.3
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEE
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYS 144 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v 144 (255)
-+|+++||+|+ +++|.+.++.+...|+ +|+..++++++.+.+++.+...+ .|-.+ +++..+.+.+... |++|++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~iDiL 80 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLED-ERERVRFVEEAAYALGRVDVL 80 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHHHHHhcCCCCeE
Confidence 36899999997 8999999999999999 99999999988888888776543 34333 1222222332221 379999
Q ss_pred EecCCcHH-------------------------HHHHHHHHhcc-CCceEEEEccCC
Q 025257 145 FECIGNVS-------------------------VMRAALECCHK-GWGTSVIVGVAA 175 (255)
Q Consensus 145 ~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~ 175 (255)
++++|... ..+.+++.|.. ++|+++.++...
T Consensus 81 VnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~ 137 (248)
T d2d1ya1 81 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQ 137 (248)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred EEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccc
Confidence 99887411 24455566643 238999987654
|
| >d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=98.21 E-value=6.6e-07 Score=62.43 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=50.5
Q ss_pred CCCCCccccCCcccccccCccceeeEEEEcCCceEEcCCCCC-----cccccccccchhhhhh-HHHhhcCCCCCCEEEE
Q 025257 3 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP-----LDKVCLLGCGVPTGLG-AVWNTAKVEPGSIVAV 76 (255)
Q Consensus 3 g~~~~~~~~~g~~v~~~~~~g~~ae~~~v~~~~~~~~p~~~~-----~~~aa~~~~~~~ta~~-~l~~~~~~~~~~~vlI 76 (255)
.++..+|++ ||+|++. ++|+||.+++.+.+.++|+.++ ....+++....+||++ .+. ...+.|++|++
T Consensus 73 ~S~~~~f~~-GD~V~g~---~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~~k~Getvv~ 146 (147)
T d1v3va1 73 ESKNSAFPA-GSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVT 146 (147)
T ss_dssp EESCTTSCT-TCEEEEC---CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEE
T ss_pred EeCCCcccC-CCEEEEc---cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhh--CCCCCCCEEEe
Confidence 456778999 9999864 6799999999999999986543 3345556667777544 453 44577999986
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=98.14 E-value=7e-06 Score=58.51 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=57.3
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCC
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~ 140 (255)
+.+...+.++++|+|+|+|+.+.+++..++..|++++.++.|+.++.+.+.+ ++... ++... ...
T Consensus 8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~-~~~~~-------------~~~ 73 (167)
T d1npya1 8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY-INSLE-------------NQQ 73 (167)
T ss_dssp HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE-ESCCT-------------TCC
T ss_pred HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh-hhccc-------------ccc
Confidence 3466677788999999999999999999999998789999999998887744 55433 22221 015
Q ss_pred ccEEEecCC
Q 025257 141 VDYSFECIG 149 (255)
Q Consensus 141 ~d~v~d~~g 149 (255)
+|++++|+.
T Consensus 74 ~DliINaTp 82 (167)
T d1npya1 74 ADILVNVTS 82 (167)
T ss_dssp CSEEEECSS
T ss_pred hhhheeccc
Confidence 899999876
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=98.14 E-value=6.8e-06 Score=62.74 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=71.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEEe---CCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFV---NPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi---~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+..++++++.+.+ ++++...++ |-.+ +.+..+.+.+... |.+|
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~iD 82 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSS-EADWTLVMAAVQRRLGTLN 82 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTC-HHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCC-HHHHHHHHHHHHHHhCCCC
Confidence 6789999997 8999999999999999 999999998887766 556643322 3222 1222222222221 3799
Q ss_pred EEEecCCcHH-------------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 143 YSFECIGNVS-------------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 143 ~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+++++.|... ..+.+++.|+..+|+++.++...
T Consensus 83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~ 140 (253)
T d1hxha_ 83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVS 140 (253)
T ss_dssp EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchh
Confidence 9999988411 24556666754349999998754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.10 E-value=1.1e-06 Score=65.43 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=75.5
Q ss_pred cccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcEEeCCCCCC
Q 025257 51 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEFVNPKDHD 126 (255)
Q Consensus 51 ~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~ 126 (255)
++.+...|. +.+...++++++||..|+|+ |..++.+++..|. +|++++.+++-.+.+ +++|.+.+.....
T Consensus 61 is~P~~~a~--ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g-- 134 (215)
T d1jg1a_ 61 VSAPHMVAI--MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG-- 134 (215)
T ss_dssp ECCHHHHHH--HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES--
T ss_pred hhhhhhHHH--HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEEC--
Confidence 443444454 45788999999999999875 7888888888887 899999987655554 4567654432221
Q ss_pred chHHHHHHhhc-CCCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 127 KPIQQVLVDLT-DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 127 ~~~~~~i~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+. ...+. .+.||.|+-+.+.+..-+..++.|++| |+++..
T Consensus 135 -d~---~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~g-GrLv~p 175 (215)
T d1jg1a_ 135 -DG---SKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP 175 (215)
T ss_dssp -CG---GGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred -cc---ccCCcccCcceeEEeecccccCCHHHHHhcCCC-CEEEEE
Confidence 11 11111 137999997766655457788999997 998764
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=1.2e-05 Score=61.17 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=69.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcE--EeCCCCCCchHHHHHHhhcC--CCccE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTE--FVNPKDHDKPIQQVLVDLTD--GGVDY 143 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~--vi~~~~~~~~~~~~i~~~~~--~~~d~ 143 (255)
+|+++||+|+ +++|.+.++.+...|+ +|++.++++++.+.+.+ ++... ..|-.+ +++..+.+.+... |++|+
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~iDi 82 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ-EDDVKTLVSETIRRFGRLDC 82 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCC-HHHHHHHHHHHHHhcCCCCE
Confidence 5789999997 8999999999999999 99999999988887754 43222 234333 1233332332222 37999
Q ss_pred EEecCCcHH--------------------------HHHHHHHHhccCCceEEEEccC
Q 025257 144 SFECIGNVS--------------------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 144 v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++++.|... ..+.+++.|+.++|+++.++..
T Consensus 83 lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~ 139 (250)
T d1ydea1 83 VVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSL 139 (250)
T ss_dssp EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCH
T ss_pred EEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccc
Confidence 999887311 2455566665434899998764
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=98.01 E-value=1.2e-05 Score=60.80 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=57.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEE-eCCCCCCchHHHHHHhhcC--CCccEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v-i~~~~~~~~~~~~i~~~~~--~~~d~v 144 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ +++++..+ .|-.+ +++..+.+.+... |++|++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iDil 81 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD-PASVERGFAEALAHLGRLDGV 81 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC-HHHHHHHHHHHHHHHSSCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCC-HHHHHHHHHHHHHhcCCceEE
Confidence 5789999997 8999999999999999 999999999888776 45665443 34333 2233333332221 379999
Q ss_pred EecCCc
Q 025257 145 FECIGN 150 (255)
Q Consensus 145 ~d~~g~ 150 (255)
+++.|.
T Consensus 82 VnnAG~ 87 (242)
T d1ulsa_ 82 VHYAGI 87 (242)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 998884
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=1.5e-05 Score=60.32 Aligned_cols=103 Identities=27% Similarity=0.388 Sum_probs=69.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCc---EEeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVT---EFVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~---~vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++.. ...|-.+ ++...+.+.+... |++|
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 80 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTD-PASIESVLEKIRAEFGEVD 80 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHTCSCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC-HHHhhhhhhhhhcccCCcc
Confidence 5789999997 8999999999999999 999999999887776 444432 2234333 1223333333221 3799
Q ss_pred EEEecCCcHH-------------------------HHHHHHHHhc-cCCceEEEEccC
Q 025257 143 YSFECIGNVS-------------------------VMRAALECCH-KGWGTSVIVGVA 174 (255)
Q Consensus 143 ~v~d~~g~~~-------------------------~~~~~~~~l~-~~~G~~v~~g~~ 174 (255)
+++++.|... ..+.+++.+. .++|+++.++..
T Consensus 81 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~ 138 (243)
T d1q7ba_ 81 ILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSV 138 (243)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred eehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecch
Confidence 9999887421 2455566653 223899999764
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=97.97 E-value=8.2e-06 Score=61.92 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=69.4
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cC-CcEEeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FG-VTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~i~~ 135 (255)
+....+++||++||-.|+|+ |.++..+|+..|. .+|++++.+++..+.+++ ++ ...+--.. .++ .+
T Consensus 77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~---~Di----~~ 148 (250)
T d1yb2a1 77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR---SDI----AD 148 (250)
T ss_dssp ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC---SCT----TT
T ss_pred HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE---eee----ec
Confidence 45678999999999999875 7788888887753 289999999988888754 22 23221111 111 12
Q ss_pred hcCC-CccEEE-ecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDG-GVDYSF-ECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~-~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
...+ .||.|+ |.......++.+.+.|++| |+++.+..
T Consensus 149 ~~~~~~fD~V~ld~p~p~~~l~~~~~~LKpG-G~lv~~~P 187 (250)
T d1yb2a1 149 FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP 187 (250)
T ss_dssp CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred ccccceeeeeeecCCchHHHHHHHHHhcCCC-ceEEEEeC
Confidence 2223 799987 5544445589999999997 99987744
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=3.9e-05 Score=58.06 Aligned_cols=106 Identities=23% Similarity=0.251 Sum_probs=70.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc---EEeCCCCCCchHHHHHHhhc--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVT---EFVNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~---~vi~~~~~~~~~~~~i~~~~--~~ 139 (255)
.|+.+||+|+ +++|...+..+...|+ +|+.+++++++.+.+ ++.|.. ...|..+ ++...+.+++.. .|
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAEIG 83 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHcC
Confidence 5789999998 8999999999999999 999999999887765 334432 1234443 122333333222 23
Q ss_pred CccEEEecCCcHH-------------------------HHHHHHHHhcc-CCceEEEEccCCCC
Q 025257 140 GVDYSFECIGNVS-------------------------VMRAALECCHK-GWGTSVIVGVAASG 177 (255)
Q Consensus 140 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~~~ 177 (255)
.+|+++++.|... ..+..++.+.. ++|+++.++.....
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~ 147 (244)
T d1yb1a_ 84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGH 147 (244)
T ss_dssp CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-C
T ss_pred CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhc
Confidence 7999999988521 23455555543 33789999876543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=8.4e-07 Score=66.12 Aligned_cols=102 Identities=19% Similarity=0.220 Sum_probs=70.8
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~ 136 (255)
+.+...++||++||-.|+|+ |..++.+++..|. .+|++++.+++..+.+++ .+...+.-.. .+. ....
T Consensus 67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~---~d~---~~~~ 139 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC---GDG---YYGV 139 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---SCG---GGCC
T ss_pred HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccccccccc---Cch---HHcc
Confidence 45788999999999999976 8888889998763 289999999887777743 3443222111 110 0011
Q ss_pred c-CCCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 137 T-DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 137 ~-~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
. .+.||+|+.+.+-....+..++.|+++ |+++..
T Consensus 140 ~~~~~fD~I~~~~~~~~~p~~l~~~LkpG-G~lv~p 174 (213)
T d1dl5a1 140 PEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP 174 (213)
T ss_dssp GGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEE
T ss_pred ccccchhhhhhhccHHHhHHHHHHhcCCC-cEEEEE
Confidence 1 126999998776655456788999997 998763
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=3.1e-05 Score=58.61 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=57.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC-Cc-EEeCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG-VT-EFVNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g-~~-~vi~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++ .. ...|-.+ ++-.+++.+.. |.+|+++
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~-g~iDilV 81 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD--WEATERALGSV-GPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHTTC-CCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC--HHHHHHHHHHh-CCceEEE
Confidence 6899999997 8999999999999999 999999999887776 4444 22 2345444 43333333322 3799999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 82 nnAg~ 86 (244)
T d1pr9a_ 82 NNAAV 86 (244)
T ss_dssp ECCCC
T ss_pred ecccc
Confidence 98874
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=97.90 E-value=7e-05 Score=57.12 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=68.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHH---HHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQ---VLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~---~i~~~~~ 138 (255)
+|+++||+|+ +++|.+.++.+...|+ +|++.++++++.+.+ ++.|... ..|-.+ +++..+ .+.+..+
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVANHFH 84 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC-HHHHHHHHHHHHHHhC
Confidence 6899999997 8999999999999999 999999998877665 2334322 233333 122332 2333333
Q ss_pred CCccEEEecCCcHH-------------------------HHHHHHHHhc-cCCceEEEEccCC
Q 025257 139 GGVDYSFECIGNVS-------------------------VMRAALECCH-KGWGTSVIVGVAA 175 (255)
Q Consensus 139 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l~-~~~G~~v~~g~~~ 175 (255)
+.+|+++++.|... ..+..++.+. .++|+++.++...
T Consensus 85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~ 147 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVS 147 (259)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGG
T ss_pred CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccc
Confidence 36999999988411 1344555543 2238999997753
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.90 E-value=4.5e-05 Score=53.64 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=57.4
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
--.+.+|||.|+|.+|.+.++.+...|+.+++++.|+.++.+. ++++|.. ++++ .++.+.+. .+|+|+.
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~----~~~~~~l~-----~~Divi~ 90 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRF----DELVDHLA-----RSDVVVS 90 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG----GGHHHHHH-----TCSEEEE
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccc----hhHHHHhc-----cCCEEEE
Confidence 3467899999999999999999999999679999998777654 4677754 3333 44555554 5999999
Q ss_pred cCCcH
Q 025257 147 CIGNV 151 (255)
Q Consensus 147 ~~g~~ 151 (255)
|++.+
T Consensus 91 atss~ 95 (159)
T d1gpja2 91 ATAAP 95 (159)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 99864
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.87 E-value=5.2e-05 Score=57.60 Aligned_cols=103 Identities=19% Similarity=0.318 Sum_probs=68.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----HhcCCcE---EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-----KNFGVTE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-----~~~g~~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.. ++.|... ..|-.+ +++..+.+.+...
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAVKEKF 81 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 5789999997 8999999999999999 999999998776543 3345432 224333 1233222332221
Q ss_pred CCccEEEecCCcHH-------------------------HHHHHHHHhcc-CCceEEEEccC
Q 025257 139 GGVDYSFECIGNVS-------------------------VMRAALECCHK-GWGTSVIVGVA 174 (255)
Q Consensus 139 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~ 174 (255)
|++|++++++|... ..+..++.|.. ++|+++.++..
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~ 143 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL 143 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence 37999999988411 24566667743 23799988763
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=97.87 E-value=5.3e-05 Score=57.88 Aligned_cols=79 Identities=22% Similarity=0.441 Sum_probs=54.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--G 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~ 139 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.|... ..|-.+ +++..+.+.+... |
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 5889999997 8999999999999999 999999998877665 3345332 234333 1233332332221 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|+++++.|.
T Consensus 82 ~iDilVnnaG~ 92 (260)
T d1zema1 82 KIDFLFNNAGY 92 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCeehhhhcc
Confidence 79999998874
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.87 E-value=0.0001 Score=56.22 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc---EEeCCCCCCchHH---HHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT---EFVNPKDHDKPIQ---QVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~vi~~~~~~~~~~---~~i~~~~~ 138 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +.+.. ...|-.+ +++.. +.+.+..+
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSSMFG 84 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC-HHHHHHHHHHHHHHhC
Confidence 6899999997 8999999999999999 9999999988776652 23322 1234333 12222 33333334
Q ss_pred CCccEEEecCCcHH-------------------------HHHHHHHHhc-cCCceEEEEccCC
Q 025257 139 GGVDYSFECIGNVS-------------------------VMRAALECCH-KGWGTSVIVGVAA 175 (255)
Q Consensus 139 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l~-~~~G~~v~~g~~~ 175 (255)
|.+|+++++.|... ..+.++..+. .++|+++.++...
T Consensus 85 g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~ 147 (259)
T d1xq1a_ 85 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIA 147 (259)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC---
T ss_pred CCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccc
Confidence 47999999988522 1344455553 2238999987654
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=3.7e-05 Score=58.88 Aligned_cols=112 Identities=19% Similarity=0.248 Sum_probs=76.7
Q ss_pred cccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCC-cEE-eC
Q 025257 49 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGV-TEF-VN 121 (255)
Q Consensus 49 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~-~~v-i~ 121 (255)
+....+--.+| +....+++||++||-.|+|+ |..+..+|+..|. .+|++++.+++..+.+++ .|. +.+ +.
T Consensus 84 ~qiiypkd~~~--Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~ 160 (266)
T d1o54a_ 84 TQIVYPKDSSF--IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK 160 (266)
T ss_dssp CCCCCHHHHHH--HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred ccccchHHHHH--HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEE
Confidence 33333433333 56889999999999999876 7788888998753 289999999998888743 453 222 22
Q ss_pred CCCCCchHHHHHHhhcCC-CccEEE-ecCCcHHHHHHHHHHhccCCceEEEEc
Q 025257 122 PKDHDKPIQQVLVDLTDG-GVDYSF-ECIGNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~-~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
..+ +...... .+|.|+ |.......++.+.++|++| |+++.+.
T Consensus 161 ~~d--------~~~~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpG-G~lv~~~ 204 (266)
T d1o54a_ 161 VRD--------ISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVC 204 (266)
T ss_dssp CCC--------GGGCCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEE
T ss_pred ecc--------ccccccccceeeeEecCCCHHHHHHHHHhhcCCC-CEEEEEe
Confidence 211 1122223 788877 4444455689999999997 9998764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=97.83 E-value=4.8e-05 Score=58.03 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=56.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCch---HHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKP---IQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~---~~~~i~~~~~ 138 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.+... ..|-.+ +++ +.+.+.+..+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~-~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS-RTERDKLMQTVAHVFD 82 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC-HHHHHHHHHHHHHHhC
Confidence 7899999997 8999999999999999 999999998776655 3445432 234433 122 2333444444
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+..|+++++.|.
T Consensus 83 g~idilinnag~ 94 (258)
T d1ae1a_ 83 GKLNILVNNAGV 94 (258)
T ss_dssp SCCCEEEECCCC
T ss_pred CCcEEEeccccc
Confidence 579999998885
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=97.83 E-value=9.7e-05 Score=53.58 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=55.2
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-c----CC-cEEeCCCCCCchHHHHHHhhcCCC
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F----GV-TEFVNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~----g~-~~vi~~~~~~~~~~~~i~~~~~~~ 140 (255)
--+|++++|+|+ |++|..+++.+...|+ +|+.+++++++.+.+.+ + .. ....|..+ . +.+.+.. ++
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~--~---~~~~~~~-~~ 92 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD--D---ASRAEAV-KG 92 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS--H---HHHHHHT-TT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc--H---HHHHHHh-cC
Confidence 448899999997 9999999999999999 99999999988776633 2 21 22333332 2 2333333 36
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++++.|.
T Consensus 93 iDilin~Ag~ 102 (191)
T d1luaa1 93 AHFVFTAGAI 102 (191)
T ss_dssp CSEEEECCCT
T ss_pred cCeeeecCcc
Confidence 9999999874
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.81 E-value=3.9e-05 Score=58.00 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=55.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcC-CcE-EeCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG-VTE-FVNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g-~~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.+ ... ..|-.+ ++-.+++-+.. |++|+++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~-g~iDilV 79 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD--WDATEKALGGI-GPVDLLV 79 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHTTC-CCCSEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC--HHHHHHHHHHc-CCCeEEE
Confidence 5789999997 8999999999999999 999999998887766 4443 322 234443 43333333222 3799999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
++.|.
T Consensus 80 nnAg~ 84 (242)
T d1cyda_ 80 NNAAL 84 (242)
T ss_dssp ECCCC
T ss_pred ECCcc
Confidence 98874
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=4e-05 Score=58.03 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=57.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCcE-EeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.+. +... +.|... .+..+...+..+ ..|.+++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~-~id~lVn 80 (245)
T d2ag5a1 5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK--KKQIDQFANEVE-RLDVLFN 80 (245)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC--HHHHHHHHHHCS-CCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeeccc--cccccccccccc-cceeEEe
Confidence 5789999997 8999999999999999 999999998887777553 4322 334333 555555544433 7999999
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
+.|.
T Consensus 81 ~ag~ 84 (245)
T d2ag5a1 81 VAGF 84 (245)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8874
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=3.5e-05 Score=59.19 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 111 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~ 111 (255)
-+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~ 54 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKV 54 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 36899999998 8999999999999999 999999999888776
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00011 Score=56.01 Aligned_cols=78 Identities=22% Similarity=0.332 Sum_probs=54.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCC-cEE----eCCCCCCchH---HHHHHhh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGV-TEF----VNPKDHDKPI---QQVLVDL 136 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~-~~v----i~~~~~~~~~---~~~i~~~ 136 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.+. ..+ .|-.+ +++. .+.+.+.
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRSQ 86 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC-HHHHHHHHHHHHHh
Confidence 5789999997 8999999999999999 999999998887765 33332 122 23333 1333 3333333
Q ss_pred cCCCccEEEecCCc
Q 025257 137 TDGGVDYSFECIGN 150 (255)
Q Consensus 137 ~~~~~d~v~d~~g~ 150 (255)
. |++|+++++.|.
T Consensus 87 ~-g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 87 H-SGVDICINNAGL 99 (257)
T ss_dssp H-CCCSEEEECCCC
T ss_pred c-CCCCEEEecccc
Confidence 3 379999998885
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.77 E-value=4.2e-05 Score=57.83 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=56.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+..++++++.+.+ ++++... ..|-.+ ++...+.+++... +++|
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 82 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGGLH 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCC-HHHHHHHHHHHHHHhCCCe
Confidence 5789999997 8999999999999999 999999999887776 4454321 134333 1233333333322 3799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 83 ilinnAG~ 90 (244)
T d1nffa_ 83 VLVNNAGI 90 (244)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999885
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.76 E-value=6.9e-06 Score=62.04 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=64.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCC----chHHHHHHhhcCC-CccE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD----KPIQQVLVDLTDG-GVDY 143 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~----~~~~~~i~~~~~~-~~d~ 143 (255)
+|++|||+|+ +++|.+.++.+...|+ +|+.+++++.+.. .....+...... ..+...+.+..+. ++|+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~ 74 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA 74 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc-----cccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence 4789999998 8999999999999999 9999987654321 111111111100 1223334444444 7999
Q ss_pred EEecCCcHH--------------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 144 SFECIGNVS--------------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 144 v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+++++|.-. .....++.++++ |+++.++...
T Consensus 75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-G~Iv~isS~~ 131 (236)
T d1dhra_ 75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAKA 131 (236)
T ss_dssp EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGG
T ss_pred EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-cceeEEccHH
Confidence 999887310 244556677886 9999997753
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.75 E-value=1.1e-05 Score=62.60 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=70.6
Q ss_pred HHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-cEE-eCCCCCCchHHHHHH
Q 025257 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGV-TEF-VNPKDHDKPIQQVLV 134 (255)
Q Consensus 61 ~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v-i~~~~~~~~~~~~i~ 134 (255)
-+.++.+++||++||-+|+|- |..++.+++..|+ +|++++.|++..+.+++ .|. +.+ +.. .++ +
T Consensus 53 ~~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~----~d~----~ 122 (285)
T d1kpga_ 53 LALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLL----AGW----E 122 (285)
T ss_dssp HHHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE----SCG----G
T ss_pred HHHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHH----hhh----h
Confidence 366889999999999999974 7888899999999 99999999998888744 332 111 111 111 1
Q ss_pred hhcCCCccEEEe-----cCCc---HHHHHHHHHHhccCCceEEEEc
Q 025257 135 DLTDGGVDYSFE-----CIGN---VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 135 ~~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+. ++.+|.|+. .++. ...++.+.++|+++ |++++-.
T Consensus 123 ~~-~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg-G~~~l~~ 166 (285)
T d1kpga_ 123 QF-DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHT 166 (285)
T ss_dssp GC-CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred cc-cccccceeeehhhhhcCchhHHHHHHHHHhhcCCC-CcEEEEE
Confidence 11 236887753 4443 23478888999997 9987643
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.75 E-value=0.00016 Score=51.76 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCC--------CCchHHHHHHhhcCCCcc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD--------HDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~--------~~~~~~~~i~~~~~~~~d 142 (255)
++++.|+|+|.+|++.+..+...|. +|.++++++++.+.+++.+......... ...+..+.+. .+|
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~aD 74 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK-----DAD 74 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT-----TCS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc-----CCC
Confidence 3689999999999999999999999 9999999999999887655321111000 0022333343 589
Q ss_pred EEEecCCcHHHHHHHHHHh
Q 025257 143 YSFECIGNVSVMRAALECC 161 (255)
Q Consensus 143 ~v~d~~g~~~~~~~~~~~l 161 (255)
+++-++.... .+..++.+
T Consensus 75 ~iii~v~~~~-~~~~~~~i 92 (184)
T d1bg6a2 75 VILIVVPAIH-HASIAANI 92 (184)
T ss_dssp EEEECSCGGG-HHHHHHHH
T ss_pred EEEEEEchhH-HHHHHHHh
Confidence 9999988765 44444433
|
| >d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=97.75 E-value=1.2e-05 Score=58.98 Aligned_cols=56 Identities=38% Similarity=0.443 Sum_probs=40.8
Q ss_pred ccCccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEE
Q 025257 19 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77 (255)
Q Consensus 19 ~~~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~ 77 (255)
+...|+|+||+++++.+++++|+.++++.++....++.+... ....+++|++|.|.
T Consensus 140 ~~~~G~fAEy~~v~~~~~~~~p~~~~~e~l~~~~~~~~~v~~---g~~~l~~G~~VaVi 195 (198)
T d2jhfa1 140 FLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEKINE---GFDLLRSGESIRTI 195 (198)
T ss_dssp STTTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHH---HHHHHHTTCCSEEE
T ss_pred CCCCCcccCeEEeCHHHeEECCCCCCHHHHHHHHHHHHhhhh---CCceeeCCCEEEEE
Confidence 344589999999999999999999988776655545443332 22346788888775
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.75 E-value=5.3e-05 Score=58.73 Aligned_cols=103 Identities=14% Similarity=0.219 Sum_probs=71.1
Q ss_pred HHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHhh
Q 025257 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 61 ~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~~ 136 (255)
-+.++.++++|++||=+|+|- |..+..+++..|+ +|++++.|++..+.++ +.|....+.... .++ ..
T Consensus 52 ~~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~--~d~-----~~ 122 (291)
T d1kpia_ 52 LALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI--QGW-----EE 122 (291)
T ss_dssp HHHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE--CCG-----GG
T ss_pred HHHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhh--hcc-----cc
Confidence 366889999999999999873 5677889999999 9999999998876663 455432111111 111 11
Q ss_pred cCCCccEEEe-----cCCc----------HHHHHHHHHHhccCCceEEEEcc
Q 025257 137 TDGGVDYSFE-----CIGN----------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 137 ~~~~~d~v~d-----~~g~----------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
..+.||.|+. .++. +..++.+.++|+|+ |++++-..
T Consensus 123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l~~i 173 (291)
T d1kpia_ 123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTI 173 (291)
T ss_dssp CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEEEEE
T ss_pred cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEEEEE
Confidence 2347998863 3332 23478899999997 99886543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=97.75 E-value=4.5e-05 Score=58.02 Aligned_cols=104 Identities=25% Similarity=0.298 Sum_probs=69.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+..++++++.+.+ ++++... ..|-.+ +++..+.+.+... |++|
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 81 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGSVD 81 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCC-HHHHHHHHHHHHHHcCCcc
Confidence 5789999997 8999999999999999 999999998887766 5566322 233333 1233333332221 3799
Q ss_pred EEEecCCcHH-------------------------HHHHHHHHhc-cCCceEEEEccCC
Q 025257 143 YSFECIGNVS-------------------------VMRAALECCH-KGWGTSVIVGVAA 175 (255)
Q Consensus 143 ~v~d~~g~~~-------------------------~~~~~~~~l~-~~~G~~v~~g~~~ 175 (255)
+++++.|... ..+.+++.+. .++|+++.++...
T Consensus 82 ilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~ 140 (254)
T d1hdca_ 82 GLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAA 140 (254)
T ss_dssp EEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred EEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccch
Confidence 9999888411 2344444433 2238999998754
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=97.74 E-value=0.00014 Score=54.82 Aligned_cols=167 Identities=18% Similarity=0.262 Sum_probs=97.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEE---eCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF---VNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v---i~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+|+++||+|+ +++|.+.++-+...|+ +|+.+.++.++.+.+ ++++.+.. .|-.+ +++..+.+.+... |++|
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~-~~~i~~~~~~i~~~~g~iD 81 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRLH 81 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCC-HHHHHHHHHHHHHHhCCcc
Confidence 5789999998 8999999999999999 999999999877665 56775422 24333 2333333333322 3799
Q ss_pred EEEecCCcHH-------------------------HHHHHHHHhccCCceEEEEccCCCCCccccCch------------
Q 025257 143 YSFECIGNVS-------------------------VMRAALECCHKGWGTSVIVGVAASGQEISTRPF------------ 185 (255)
Q Consensus 143 ~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~------------ 185 (255)
+.+++.|... ..+..+..+..+ +.++..+.............
T Consensus 82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~-~~i~~~ss~a~~~~~~~~~Y~~sK~al~~lt~ 160 (241)
T d2a4ka1 82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG-GSLVLTGSVAGLGAFGLAHYAAGKLGVVGLAR 160 (241)
T ss_dssp EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-CEEEEECCCTTCCHHHHHHHHHCSSHHHHHHH
T ss_pred Eeccccccccccchhhhhccccccccccccccccccccccccccccc-cceeeccccccccccCccccchhhHHHHHHHH
Confidence 9999877422 134555667775 77776665432211111111
Q ss_pred ----hhcc-CcEEEEeeeCCCCcc---CcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCC
Q 025257 186 ----QLVT-GRVWKGTAFGGFKSR---SQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG 244 (255)
Q Consensus 186 ----~~~~-~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 244 (255)
.+-. +++......+..... ...++..+.+.+.. .+. +.-..+|+.++..+|.+.
T Consensus 161 ~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~-p~~----r~~~p~dva~~v~fL~S~ 222 (241)
T d2a4ka1 161 TLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGAS-PLG----RAGRPEEVAQAALFLLSE 222 (241)
T ss_dssp HHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTS-TTC----SCBCHHHHHHHHHHHHSG
T ss_pred HHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhCC-CCC----CCcCHHHHHHHHHHHhcc
Confidence 1223 567766655443211 12233344333321 122 222468899998888654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.73 E-value=0.00012 Score=54.79 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++ +++.+...+. |-. ......+.++ +.+|+++++
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~---l~~~~~~~~~~Dv~---~~~~~~~~~~--g~iD~lVnn 73 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVVCDLR---KDLDLLFEKV--KEVDILVLN 73 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEECCTT---TCHHHHHHHS--CCCSEEEEC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHH---HHhcCCcEEEcchH---HHHHHHHHHh--CCCcEEEec
Confidence 5789999997 8999999999999999 99999988654 4455544333 322 3333333333 379999998
Q ss_pred CCc
Q 025257 148 IGN 150 (255)
Q Consensus 148 ~g~ 150 (255)
.|.
T Consensus 74 AG~ 76 (234)
T d1o5ia_ 74 AGG 76 (234)
T ss_dssp CCC
T ss_pred ccc
Confidence 874
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.73 E-value=3.2e-05 Score=59.02 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=56.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ +++|... ..|-.+ ++...+.+.+... |++|
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~~g~iD 81 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTD-QASIDRCVAELLDRWGSID 81 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCC-HHHHHHHHHHHHHHhCCcc
Confidence 5789999997 8999999999999999 999999998887765 5666432 234333 1233333333222 3799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++++.|.
T Consensus 82 ilVnnAg~ 89 (256)
T d1k2wa_ 82 ILVNNAAL 89 (256)
T ss_dssp EEEECCCC
T ss_pred EEEeeccc
Confidence 99998884
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.72 E-value=4.2e-05 Score=56.91 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=67.5
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC--Cc--EEeCCCCCCchHHHHHHhhc
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG--VT--EFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g--~~--~vi~~~~~~~~~~~~i~~~~ 137 (255)
+.+...++++++||-.|+|. |..++.+++. +. +|++++.+++..+.+++.- .. .++.... ...+ ..
T Consensus 62 ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l-~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~-~~g~------~~ 131 (224)
T d1vbfa_ 62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEI-VD-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG-TLGY------EE 131 (224)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG-GGCC------GG
T ss_pred HHHHhhhcccceEEEecCCC-CHHHHHHHHH-hc-ccccccccHHHHHHHHHHHhcccccccccCch-hhcc------hh
Confidence 45778999999999999874 7777777775 55 9999999998888875531 11 1221110 0101 11
Q ss_pred CCCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 138 DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.+.||.|+-+.+.+...+..++.|++| |+++..
T Consensus 132 ~~pfD~Iiv~~a~~~ip~~l~~qLk~G-GrLV~p 164 (224)
T d1vbfa_ 132 EKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILP 164 (224)
T ss_dssp GCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred hhhHHHHHhhcchhhhhHHHHHhcCCC-CEEEEE
Confidence 237999987666555456788999997 998875
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=3.2e-05 Score=56.82 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=64.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
.++|+|+|+ |.+|..+++.+...|. +|++++|++++.......++..+. |..+ . +.+.+... ++|+|+.++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~~~~gD~~d--~---~~l~~al~-~~d~vi~~~ 75 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVLQ--A---ADVDKTVA-GQDAVIVLL 75 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTTS--H---HHHHHHHT-TCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccccccccccccccccc--h---hhHHHHhc-CCCEEEEEe
Confidence 468999998 9999999998888999 999999998886655455555443 3332 2 22333222 589999998
Q ss_pred CcHH----------HHHHHHHHhccC-CceEEEEcc
Q 025257 149 GNVS----------VMRAALECCHKG-WGTSVIVGV 173 (255)
Q Consensus 149 g~~~----------~~~~~~~~l~~~-~G~~v~~g~ 173 (255)
|... ....+++.++.. -.+++.++.
T Consensus 76 g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss 111 (205)
T d1hdoa_ 76 GTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS 111 (205)
T ss_dssp CCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence 8521 133445555543 137777754
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=97.71 E-value=4.2e-05 Score=58.96 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ +++|... ..|-.+ +++..+.+.+... +.+|
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~id 81 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRS-LEDQKQAASRCVARFGKID 81 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEeccccc-HHHHHHHHHHHHHHhCCcc
Confidence 5899999997 8999999999999999 999999998887666 4555322 224333 1223333332221 3799
Q ss_pred EEEecCC
Q 025257 143 YSFECIG 149 (255)
Q Consensus 143 ~v~d~~g 149 (255)
+++++.|
T Consensus 82 ilvnnAG 88 (276)
T d1bdba_ 82 TLIPNAG 88 (276)
T ss_dssp EEECCCC
T ss_pred ccccccc
Confidence 9999887
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.70 E-value=9.4e-05 Score=56.13 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=94.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHH---HHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQ---VLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~---~i~~~~~ 138 (255)
.++.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.|... ..|-.+ ++...+ .+.+..
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~- 85 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTEH- 85 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHC-
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHhc-
Confidence 4788999997 8999999999999999 999999998877655 3445332 234333 122322 332322
Q ss_pred CCccEEEecCCcHH-------------------------HHHHHHHHhc-cCCceEEEEccCCCCCc----cccCc----
Q 025257 139 GGVDYSFECIGNVS-------------------------VMRAALECCH-KGWGTSVIVGVAASGQE----ISTRP---- 184 (255)
Q Consensus 139 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l~-~~~G~~v~~g~~~~~~~----~~~~~---- 184 (255)
|++|+++++.|... ..+..++.+. .++|++|.++....... .....
T Consensus 86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaa 165 (251)
T d2c07a1 86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAG 165 (251)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHH
T ss_pred CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCCHHHHHHHHH
Confidence 37999999887411 1344454442 22489999976431111 11110
Q ss_pred ---------hhhcc-CcEEEEeeeCCCCc---cCcHHHHHHHHHcCCCCCCCcceeeeecchHHHHHHHhhCC
Q 025257 185 ---------FQLVT-GRVWKGTAFGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG 244 (255)
Q Consensus 185 ---------~~~~~-~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 244 (255)
..+-. +++......+.... ....++..+.+.+.. .+. +.-..+|+.++..+|.+.
T Consensus 166 l~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~-pl~----R~~~pedvA~~v~fL~S~ 233 (251)
T d2c07a1 166 VIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNI-PAG----RMGTPEEVANLACFLSSD 233 (251)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTC-TTS----SCBCHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHHHHHHhcC-CCC----CCcCHHHHHHHHHHHhCc
Confidence 01223 67776665543321 112233444433321 122 233467888888887643
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=0.00013 Score=51.80 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cC---CcEEeCCCCCCchHHHHHHhhc
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FG---VTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g---~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
|.+..-..++++|||+|+|+.+.+++..+...|+ +++++.|+.++.+.+.+ +. ....+...+ ..
T Consensus 9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~-----------~~ 76 (170)
T d1nyta1 9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMDE-----------LE 76 (170)
T ss_dssp HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCSGG-----------GT
T ss_pred HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhccccccccccc-----------cc
Confidence 4344444678999999999999999999999999 89999999988777643 22 222222111 11
Q ss_pred CCCccEEEecCCcHH
Q 025257 138 DGGVDYSFECIGNVS 152 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~ 152 (255)
...+|++++|+....
T Consensus 77 ~~~~dliIN~Tp~G~ 91 (170)
T d1nyta1 77 GHEFDLIINATSSGI 91 (170)
T ss_dssp TCCCSEEEECCSCGG
T ss_pred ccccceeecccccCc
Confidence 126899999986543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=8.3e-06 Score=61.88 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=70.7
Q ss_pred hHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHh
Q 025257 60 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 60 ~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
..+....+++||++||=.|+|. |..+..+++..|+ +|++++.|++..+.+++ .|...-+.... .+. .+
T Consensus 23 ~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~--~d~----~~ 94 (245)
T d1nkva_ 23 ATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIH--NDA----AG 94 (245)
T ss_dssp HHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE--SCC----TT
T ss_pred HHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhh--hHH----hh
Confidence 3467889999999999999875 6677788888898 99999999987776644 45321011000 111 11
Q ss_pred hc-CCCccEEEecC------CcHHHHHHHHHHhccCCceEEEEc
Q 025257 136 LT-DGGVDYSFECI------GNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 136 ~~-~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.. .+.||+|+-.- .-...++.+.+.|+++ |+++...
T Consensus 95 ~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG-G~l~i~~ 137 (245)
T d1nkva_ 95 YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE 137 (245)
T ss_dssp CCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred ccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC-cEEEEEe
Confidence 22 23799997421 2244588899999997 9987753
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=1.8e-05 Score=61.27 Aligned_cols=102 Identities=14% Similarity=0.219 Sum_probs=69.2
Q ss_pred hHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHh
Q 025257 60 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 60 ~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
..+.+..+++||++||-+|+|. |..+..+++..|+ +|++++.|++..+.+++ .|....+.... .++ ++
T Consensus 42 ~~~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~--~d~----~~ 113 (280)
T d2fk8a1 42 DLNLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL--QGW----ED 113 (280)
T ss_dssp HHHHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE--SCG----GG
T ss_pred HHHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhh--hhh----hh
Confidence 3466888999999999999874 5566778888899 99999999998887743 34321111010 111 11
Q ss_pred hcCCCccEEEe-----cCCcH---HHHHHHHHHhccCCceEEEE
Q 025257 136 LTDGGVDYSFE-----CIGNV---SVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 136 ~~~~~~d~v~d-----~~g~~---~~~~~~~~~l~~~~G~~v~~ 171 (255)
. .+.||.|+. .++.+ ..++.+.++|+++ |+++.-
T Consensus 114 ~-~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg-G~~~i~ 155 (280)
T d2fk8a1 114 F-AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQ 155 (280)
T ss_dssp C-CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEE
T ss_pred h-ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC-ceEEEE
Confidence 1 236888853 33332 3478889999997 998764
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=0.00024 Score=54.04 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=78.5
Q ss_pred CcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----c--C-
Q 025257 44 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKN----F--G- 115 (255)
Q Consensus 44 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~----~--g- 115 (255)
++...+....+--.++ +....+++||++||-.|+|+ |.++..+|+..|.. +|+.++.+++..+.+++ + +
T Consensus 72 ~~~r~tqiiypkD~s~--Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~ 148 (264)
T d1i9ga_ 72 SMPRGPQVIYPKDAAQ--IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 148 (264)
T ss_dssp TSCSCSCCCCHHHHHH--HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC
T ss_pred hccCCccccchHHHHH--HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCC
Confidence 3444444443333333 56889999999999999875 88889999988743 89999999988888754 1 1
Q ss_pred CcEEeCCCCCCchHHHHHHhhcCCCccEEE-ecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 116 VTEFVNPKDHDKPIQQVLVDLTDGGVDYSF-ECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 116 ~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.+.... .+..+ .....+.||.|| |.......++.+.+.|+++ |+++.+-.
T Consensus 149 ~~nv~~~~---~d~~~--~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpG-G~lv~~~P 201 (264)
T d1i9ga_ 149 PDNWRLVV---SDLAD--SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA 201 (264)
T ss_dssp CTTEEEEC---SCGGG--CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred CceEEEEe---ccccc--ccccCCCcceEEEecCCHHHHHHHHHhccCCC-CEEEEEeC
Confidence 22221111 11111 011123799876 5544445588999999997 99987743
|
| >d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.65 E-value=1.9e-06 Score=63.32 Aligned_cols=55 Identities=33% Similarity=0.474 Sum_probs=40.6
Q ss_pred CccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCCCCCEEEEEcCChHHHH
Q 025257 21 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLA 85 (255)
Q Consensus 21 ~~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~ 85 (255)
..|+|+||+++++..++++|++++.+.++...+.+.+ +.+++.|||.|+|++|++
T Consensus 142 ~~g~faey~~v~~~~~~kip~~~~~~~~~~~~~~~~~----------v~~~~~vlv~G~G~iGl~ 196 (198)
T d1p0fa1 142 GTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLDQ----------INKAFELLSSGQGVRSIM 196 (198)
T ss_dssp TTCCSBSEEEEETTSEEEECTTSCGGGGEEEEECGGG----------HHHHHHHTTTSSCSEEEE
T ss_pred CCccceeeEEecHHHEEECCCCCCHHHHHHhhcchhh----------cCCCCEEEEECCCcceEE
Confidence 3589999999999999999999988776554433333 223456888888887753
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.65 E-value=0.00014 Score=55.83 Aligned_cols=103 Identities=22% Similarity=0.260 Sum_probs=68.2
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHH----HHhcCCcEE---eCCCCCCchHHHHHHhhcC-
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDR----AKNFGVTEF---VNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~~~----~~~~g~~~v---i~~~~~~~~~~~~i~~~~~- 138 (255)
-+|+++||+|+ +++|.+.++.+...|+ +|++.+++. +..+. +++.|.+.. .|-.+ ++++.+.+.+...
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV-VEDIVRMFEEAVKI 93 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCC-HHHHHHHHHHHHHH
Confidence 35799999997 8999999999999999 999988764 33333 345564432 23332 2333333333322
Q ss_pred -CCccEEEecCCcHH-------------------------HHHHHHHHhccCCceEEEEccC
Q 025257 139 -GGVDYSFECIGNVS-------------------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 139 -~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
|+.|+++++.|... ..+..+..|..+ |+++.++..
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-g~~i~i~s~ 154 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI 154 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc-ccccccccc
Confidence 37999998887421 256667778886 888887653
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=97.64 E-value=8.8e-05 Score=56.85 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=54.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC---cEE--eCCCCCCchHHHHHHhhcC--CC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV---TEF--VNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~---~~v--i~~~~~~~~~~~~i~~~~~--~~ 140 (255)
+|+.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++. ... .|-.+ +++..+.+.+... |.
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence 6789999997 8999999999999999 999999998887766 33332 111 24333 1233332332221 37
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|+++++.|.
T Consensus 83 iD~lVnnAG~ 92 (268)
T d2bgka1 83 LDIMFGNVGV 92 (268)
T ss_dssp CCEEEECCCC
T ss_pred cceecccccc
Confidence 9999998873
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.62 E-value=0.00022 Score=50.71 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=61.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
+++|+|.|+|.+|..+++.+...|. +|++++++.++.+.+.+ ++...+. .... .....+... ...|.++.+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~-~~~~~~~~i----~~~~~~i~~~ 75 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVN-DDAALDAEV----AKHDLVISLI 75 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTT-CHHHHHHHH----TTSSEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhccccccccccccc-chhhhHhhh----hccceeEeec
Confidence 5799999999999999999999999 99999999999988855 3332222 1111 111212211 1467787777
Q ss_pred CcHHHHHHHHHHhccCCceEEEEc
Q 025257 149 GNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 149 g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
...........++..+ ..++...
T Consensus 76 ~~~~~~~~~~~~~~~~-~~~~~~~ 98 (182)
T d1e5qa1 76 PYTFHATVIKSAIRQK-KHVVTTS 98 (182)
T ss_dssp CGGGHHHHHHHHHHHT-CEEECSS
T ss_pred cchhhhHHHHHHHhhc-cceeecc
Confidence 6655344444555554 5555443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.61 E-value=0.00012 Score=55.73 Aligned_cols=104 Identities=19% Similarity=0.316 Sum_probs=67.3
Q ss_pred CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-cchHHHH----HhcCCcEE---eCCCCCCchHHHHHHhhc
Q 025257 67 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 67 ~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~-~~~~~~~----~~~g~~~v---i~~~~~~~~~~~~i~~~~ 137 (255)
++-.|+++||+|+ +++|.+.++.+...|+ +|+...++ ++..+.+ ++.|.+.+ .|..+ ++...+.+.+..
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK-PSEVVALFDKAV 79 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCC-HHHHHHHHHHHH
Confidence 3456899999997 8999999999999999 99887544 4433433 45665432 23332 123333333222
Q ss_pred C--CCccEEEecCCcHH-------------------------HHHHHHHHhccCCceEEEEcc
Q 025257 138 D--GGVDYSFECIGNVS-------------------------VMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 ~--~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~ 173 (255)
. |+.|+++++.|... ..+..+..++.+ |.++.+..
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~~iii~s 141 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSS 141 (259)
T ss_dssp HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC-Cccccccc
Confidence 1 27999999888521 256677778886 77777754
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.60 E-value=0.00027 Score=55.00 Aligned_cols=103 Identities=24% Similarity=0.295 Sum_probs=65.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc---------hHHHH----HhcCCcEEeCCCCCCchHHHHHHh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK---------KFDRA----KNFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~---------~~~~~----~~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
+|+++||+|+ +++|.+.++.+...|+ +|++.+++.+ ..+.+ ...+.....+..+ .....+.+.+
T Consensus 6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~v~~ 83 (302)
T d1gz6a_ 6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS-VEAGEKLVKT 83 (302)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC-GGGHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccch-HHHHHHHHHH
Confidence 5789999998 8999999999999999 9999875432 22222 2234444444443 1233333332
Q ss_pred hc--CCCccEEEecCCcHH-------------------------HHHHHHHHhcc-CCceEEEEccC
Q 025257 136 LT--DGGVDYSFECIGNVS-------------------------VMRAALECCHK-GWGTSVIVGVA 174 (255)
Q Consensus 136 ~~--~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~ 174 (255)
.. -|++|+++++.|... ..+.++..|+. ++|++|.++..
T Consensus 84 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~ 150 (302)
T d1gz6a_ 84 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASA 150 (302)
T ss_dssp HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred HHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCCh
Confidence 21 137999999988411 24555666632 23899999764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.58 E-value=0.00025 Score=49.97 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=60.9
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-cEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV-TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
+|.|.|.|.+|...++.++..|. +|++.++++++.+.+++.|. +...+..+ .+ ...|+|+-|+...
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~-------~~-----~~~DiIilavp~~ 68 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLS-------LL-----QTAKIIFLCTPIQ 68 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGG-------GG-----TTCSEEEECSCHH
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeecc-------cc-----cccccccccCcHh
Confidence 58899999999999999999999 99999999999999988884 44332211 11 1589999888655
Q ss_pred HHHHHHHHH----hccCCceEEEEcc
Q 025257 152 SVMRAALEC----CHKGWGTSVIVGV 173 (255)
Q Consensus 152 ~~~~~~~~~----l~~~~G~~v~~g~ 173 (255)
. .+..++. +.++ ..++.++.
T Consensus 69 ~-~~~vl~~l~~~l~~~-~iv~~~~s 92 (165)
T d2f1ka2 69 L-ILPTLEKLIPHLSPT-AIVTDVAS 92 (165)
T ss_dssp H-HHHHHHHHGGGSCTT-CEEEECCS
T ss_pred h-hhhhhhhhhhhcccc-cceeeccc
Confidence 4 4444444 4443 44444443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=97.58 E-value=0.00053 Score=51.83 Aligned_cols=95 Identities=24% Similarity=0.443 Sum_probs=63.7
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-EEeCCCCCCchHHHHHHhhcCCCc
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
..++|++||=.|+|. |..++.++ ..|+ +|++++.+++..+.+++ .|.. .++. .+..+. ...+.|
T Consensus 117 ~~~~g~~VLDiGcGs-G~l~i~aa-~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~-----~d~~~~---~~~~~f 185 (254)
T d2nxca1 117 HLRPGDKVLDLGTGS-GVLAIAAE-KLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE-----GSLEAA---LPFGPF 185 (254)
T ss_dssp HCCTTCEEEEETCTT-SHHHHHHH-HTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE-----SCHHHH---GGGCCE
T ss_pred hcCccCEEEEcccch-hHHHHHHH-hcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEe-----cccccc---cccccc
Confidence 368999999999874 66666555 4788 99999999998877753 4433 2221 223221 122379
Q ss_pred cEEEecCCcHH---HHHHHHHHhccCCceEEEEcc
Q 025257 142 DYSFECIGNVS---VMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 142 d~v~d~~g~~~---~~~~~~~~l~~~~G~~v~~g~ 173 (255)
|+|+-+..... .++.+.+.|+++ |++++.|.
T Consensus 186 D~V~ani~~~~l~~l~~~~~~~LkpG-G~lilSgi 219 (254)
T d2nxca1 186 DLLVANLYAELHAALAPRYREALVPG-GRALLTGI 219 (254)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred chhhhccccccHHHHHHHHHHhcCCC-cEEEEEec
Confidence 99996544322 256777899997 99987654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=6.8e-05 Score=57.07 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=54.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHH---HHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQ---VLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~---~i~~~~~ 138 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.|... ..|-.+ +++..+ .+.+..
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~-~~~~~~~~~~~~~~~- 86 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISKL- 86 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCC-HHHHHHHHHHHHHHc-
Confidence 6789999997 8999999999999999 999999998876654 3455432 223333 122222 222222
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
|++|+++++.|.
T Consensus 87 g~iDilvnnAG~ 98 (255)
T d1fmca_ 87 GKVDILVNNAGG 98 (255)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEeeeCCcC
Confidence 379999998885
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.58 E-value=0.00071 Score=44.32 Aligned_cols=91 Identities=13% Similarity=-0.053 Sum_probs=63.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhcCCcEEeC-CCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVTEFVN-PKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~--~~~~~~~~g~~~vi~-~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.|.+|||.|+|.+|..-++.+...|+ +|++++.... -.+++++-+....-. +.+ .++ .++++|+-
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~--~dl---------~~~~lv~~ 78 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLTLVEGPFDE--TLL---------DSCWLAIA 78 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCEEEESSCCG--GGG---------TTCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCceeeccCCCH--HHh---------CCCcEEee
Confidence 46899999999999999999999999 9888875443 223333323332221 111 211 26899999
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+++.+..-..+...++.. |.++-+..
T Consensus 79 at~d~~~n~~i~~~a~~~-~ilVNv~D 104 (113)
T d1pjqa1 79 ATDDDTVNQRVSDAAESR-RIFCNVVD 104 (113)
T ss_dssp CCSCHHHHHHHHHHHHHT-TCEEEETT
T ss_pred cCCCHHHHHHHHHHHHHc-CCEEEeCC
Confidence 999988456777888886 88887755
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00011 Score=56.55 Aligned_cols=99 Identities=22% Similarity=0.196 Sum_probs=64.2
Q ss_pred CCEE-EEEcC-ChHHHHHHH-HHHHcCCCeEEEEcCCcchHHHH----HhcCCc--E-EeCCCCCCch---HHHHHHhhc
Q 025257 71 GSIV-AVFGL-GTVGLAVAE-GAKAAGASRVIGIDIDPKKFDRA----KNFGVT--E-FVNPKDHDKP---IQQVLVDLT 137 (255)
Q Consensus 71 ~~~v-lI~G~-g~vG~~a~~-l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~--~-vi~~~~~~~~---~~~~i~~~~ 137 (255)
|++| ||+|+ +++|++.++ |++..|+ +|+..++++++.+.+ ++.+.. . ..|-.+ .+. +.+.+.+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~-~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD-LQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCC-HHHHHHHHHHHHHhc
Confidence 5677 78887 899999875 5555688 999999999887665 333432 1 234333 122 233343332
Q ss_pred CCCccEEEecCCcHH-------------------------HHHHHHHHhccCCceEEEEcc
Q 025257 138 DGGVDYSFECIGNVS-------------------------VMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.+|+++++.|... ..+.++..|+.. |+++.++.
T Consensus 80 -g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-g~ivnisS 138 (275)
T d1wmaa1 80 -GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSS 138 (275)
T ss_dssp -SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECC
T ss_pred -CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccc
Confidence 37999999988410 244556667886 99998875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=1.4e-05 Score=59.81 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=69.7
Q ss_pred chhhhhhHHHhhc--CCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCc-----EEeC
Q 025257 54 GVPTGLGAVWNTA--KVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVT-----EFVN 121 (255)
Q Consensus 54 ~~~ta~~~l~~~~--~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~-----~vi~ 121 (255)
+...|. +.+.. .++||++||..|+|+ |..++.+++..|. .+|++++.+++-.+.+++ .+.. .+..
T Consensus 60 P~~~a~--~le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~ 136 (224)
T d1i1na_ 60 PHMHAY--ALELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 136 (224)
T ss_dssp HHHHHH--HHHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred hHHHHH--HHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEE
Confidence 444443 33444 789999999999975 8888888888763 289999999877666632 2221 1100
Q ss_pred CCCCCchHHHHHHhhcC-CCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 122 PKDHDKPIQQVLVDLTD-GGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 122 ~~~~~~~~~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.. .+. ...... +.||.|+-+...+...+..++.|++| |+++..
T Consensus 137 ~~---gD~---~~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpG-G~LV~p 180 (224)
T d1i1na_ 137 VV---GDG---RMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILP 180 (224)
T ss_dssp EE---SCG---GGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred EE---eec---ccccchhhhhhhhhhhcchhhcCHHHHhhcCCC-cEEEEE
Confidence 00 000 011111 27999997766655457889999997 998774
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=97.54 E-value=0.00021 Score=54.39 Aligned_cols=103 Identities=21% Similarity=0.325 Sum_probs=65.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHH-----HhcCCcEE---eCCCCCCchHHH---HHHhh
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRA-----KNFGVTEF---VNPKDHDKPIQQ---VLVDL 136 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~-~~~~~~-----~~~g~~~v---i~~~~~~~~~~~---~i~~~ 136 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++ ++.+.+ .+.|.... .|-.+ ++...+ .+.+.
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHH
Confidence 6789999997 8999999999999999 999999874 444433 22343322 23332 122322 33332
Q ss_pred cCCCccEEEecCCcHH-------------------------HHHHHHHHhcc-CCceEEEEccCC
Q 025257 137 TDGGVDYSFECIGNVS-------------------------VMRAALECCHK-GWGTSVIVGVAA 175 (255)
Q Consensus 137 ~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~ 175 (255)
. |++|+++++.|... ..+..++.+.. ++|+++.++...
T Consensus 81 ~-G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~ 144 (260)
T d1x1ta1 81 M-GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAH 144 (260)
T ss_dssp H-SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred h-CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccc
Confidence 2 37999999988421 23455555543 238999987654
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.53 E-value=1.9e-05 Score=59.52 Aligned_cols=98 Identities=24% Similarity=0.287 Sum_probs=62.0
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCC----chHHHHHHhhcC-CCccEE
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD----KPIQQVLVDLTD-GGVDYS 144 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~----~~~~~~i~~~~~-~~~d~v 144 (255)
+.+|||+|+ +++|.+.++.+...|+ +|+.+++++++... ....+...... ....+.+..... +.+|++
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l 75 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQAD-----SNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV 75 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTSS-----EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhccc-----ccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence 357999998 9999999999999999 99999987653211 11111111100 111222222223 379999
Q ss_pred EecCCcHH--------------------------HHHHHHHHhccCCceEEEEccCC
Q 025257 145 FECIGNVS--------------------------VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 145 ~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+++.|... ..+..+..++++ |+++.++...
T Consensus 76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~Iv~isS~~ 131 (235)
T d1ooea_ 76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAAA 131 (235)
T ss_dssp EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGG
T ss_pred EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-eEEEEeccHH
Confidence 99887310 134566677886 9999997643
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.50 E-value=0.00017 Score=54.76 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=53.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--CC
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~ 140 (255)
|+.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.|... ..|-.+ +++..+.+.+... |+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence 567899997 8999999999999999 999999998876655 3445432 234333 1233322332221 37
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
+|++++++|.
T Consensus 80 iDilVnnAG~ 89 (257)
T d2rhca1 80 VDVLVNNAGR 89 (257)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEecccc
Confidence 9999999884
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=3.4e-05 Score=60.68 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=68.4
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----cC-----------CcEE-eCCCC
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKN----FG-----------VTEF-VNPKD 124 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~----~g-----------~~~v-i~~~~ 124 (255)
+....+++||++||-.|+|+ |.+++.+|+..|.. +|+.++.+++..+.+++ ++ .+.+ +...+
T Consensus 90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d 168 (324)
T d2b25a1 90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 168 (324)
T ss_dssp HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence 56778999999999999875 88899999988743 89999999988877743 11 1111 10000
Q ss_pred CCchHHHHHHhhcCCCccEEE-ecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 125 HDKPIQQVLVDLTDGGVDYSF-ECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 125 ~~~~~~~~i~~~~~~~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
-.+... ....+.||.|| |-......++.+.+.|++| |+++.+-.
T Consensus 169 -i~~~~~---~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpG-G~lv~~~P 213 (324)
T d2b25a1 169 -ISGATE---DIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV 213 (324)
T ss_dssp -TTCCC----------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred -hhhccc---ccCCCCcceEeecCcCHHHHHHHHHHhccCC-CEEEEEeC
Confidence 011111 11112688887 5433333588999999997 99988743
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00018 Score=54.57 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=66.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc----C-CcE---EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----G-VTE---FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~----g-~~~---vi~~~~~~~~~~~~i~~~~~- 138 (255)
.|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. ++ + ... ..|-.+ +++..+.+.+...
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC-HHHHHHHHHHHHHH
Confidence 4789999997 8999999999999999 9999999988766652 22 1 111 124333 1233333333222
Q ss_pred -CCccEEEecCCcHH-----------------HHHHHHHHhccC----CceEEEEccCC
Q 025257 139 -GGVDYSFECIGNVS-----------------VMRAALECCHKG----WGTSVIVGVAA 175 (255)
Q Consensus 139 -~~~d~v~d~~g~~~-----------------~~~~~~~~l~~~----~G~~v~~g~~~ 175 (255)
|++|+++++.|... .....++.+... +|+++.++...
T Consensus 80 ~G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~ 138 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA 138 (254)
T ss_dssp HSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred cCCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence 37999999988521 133444444321 27899987653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=97.49 E-value=0.00025 Score=51.18 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=65.0
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-Cc-----------------EEe--CCC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG-VT-----------------EFV--NPK 123 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-~~-----------------~vi--~~~ 123 (255)
....++|+.+||..|+|. |..+..||+ .|+ +|++++.|++..+.+++.- .. ..+ +..
T Consensus 14 ~~l~~~~~~rvLd~GCG~-G~~a~~la~-~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 90 (201)
T d1pjza_ 14 SSLNVVPGARVLVPLCGK-SQDMSWLSG-QGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF 90 (201)
T ss_dssp HHHCCCTTCEEEETTTCC-SHHHHHHHH-HCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred HHcCCCCCCEEEEecCcC-CHHHHHHHH-cCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence 445789999999999985 788888886 599 9999999999998886531 10 000 111
Q ss_pred CCCchHHHHHHhhcCCCccEEEecCCc--------HHHHHHHHHHhccCCceEEEEc
Q 025257 124 DHDKPIQQVLVDLTDGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 124 ~~~~~~~~~i~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+ ... ... ..+|.|++...- ...++.+.+.|+++ |+++...
T Consensus 91 ~--l~~--~~~----~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg-G~l~l~~ 138 (201)
T d1pjza_ 91 A--LTA--RDI----GHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLIT 138 (201)
T ss_dssp S--STH--HHH----HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEE
T ss_pred c--ccc--ccc----cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC-cEEEEEE
Confidence 1 111 110 158998874431 23477888999997 9876553
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=97.47 E-value=0.00013 Score=55.27 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=54.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCC--c-E--EeCCCCCCch---HHHHHHhhcCC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGV--T-E--FVNPKDHDKP---IQQVLVDLTDG 139 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~--~-~--vi~~~~~~~~---~~~~i~~~~~~ 139 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++. . . ..|-.+ ++. +.+.+.+.. |
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~-G 81 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAF-G 81 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC-HHHHHHHHHHHHHHh-C
Confidence 5789999997 8999999999999999 9999999988877763 3331 1 1 124333 122 333333333 3
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
++|+++++.|.
T Consensus 82 ~iDiLVnnAg~ 92 (251)
T d1zk4a1 82 PVSTLVNNAGI 92 (251)
T ss_dssp SCCEEEECCCC
T ss_pred CceEEEecccc
Confidence 79999998885
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=97.47 E-value=0.00036 Score=52.93 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=54.7
Q ss_pred cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-------HHHHHhcCCcEE---eCCCCCCchHHHHHH
Q 025257 66 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-------FDRAKNFGVTEF---VNPKDHDKPIQQVLV 134 (255)
Q Consensus 66 ~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~-------~~~~~~~g~~~v---i~~~~~~~~~~~~i~ 134 (255)
..++|+.++||+|+ +++|++.++.+...|+++|+.+.|+..+ .+.+++.|.... .|-.+ .....+.+.
T Consensus 4 ~~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d-~~~~~~~~~ 82 (259)
T d2fr1a1 4 DEWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD-RESVRELLG 82 (259)
T ss_dssp CCCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHH
T ss_pred cccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccch-HHHHHHhhc
Confidence 35789999999997 9999999998888998557777765422 222344565322 24333 123333333
Q ss_pred hhcCC-CccEEEecCCc
Q 025257 135 DLTDG-GVDYSFECIGN 150 (255)
Q Consensus 135 ~~~~~-~~d~v~d~~g~ 150 (255)
..... +.|.++++.|.
T Consensus 83 ~i~~~~~i~~vv~~ag~ 99 (259)
T d2fr1a1 83 GIGDDVPLSAVFHAAAT 99 (259)
T ss_dssp TSCTTSCEEEEEECCCC
T ss_pred ccccccccccccccccc
Confidence 34333 78999998884
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.47 E-value=0.00016 Score=55.49 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=54.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC--c----EEeCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV--T----EFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~--~----~vi~~~~~~~~~~~~i~~~~~ 138 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +.+. . ...|-.+ ++...+.+.+...
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLK 81 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC-HHHHHHHHHHHHH
Confidence 5789999997 8999999999999999 9999999988876653 3332 1 1224333 1223222332222
Q ss_pred --CCccEEEecCCc
Q 025257 139 --GGVDYSFECIGN 150 (255)
Q Consensus 139 --~~~d~v~d~~g~ 150 (255)
|++|+++++.|.
T Consensus 82 ~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGA 95 (272)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HhCCceEEEeCCcc
Confidence 379999998774
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=97.47 E-value=0.00017 Score=54.09 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=66.5
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
+.++.+||-.|+|+ |..+..+++ .|+ +|++++.+++..+.+++.+....+.... .++ ....+.||+|+..
T Consensus 40 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~--~~l-----~~~~~~fD~ii~~ 109 (246)
T d2avna1 40 LKNPCRVLDLGGGT-GKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA--EDL-----PFPSGAFEAVLAL 109 (246)
T ss_dssp CCSCCEEEEETCTT-CHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT--TSC-----CSCTTCEEEEEEC
T ss_pred cCCCCEEEEECCCC-chhcccccc-cce-EEEEeecccccccccccccccccccccc--ccc-----ccccccccceeee
Confidence 45778999999984 888888876 588 9999999999999998877654443322 221 1222379998854
Q ss_pred CC-------cHHHHHHHHHHhccCCceEEEE
Q 025257 148 IG-------NVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 148 ~g-------~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.. ....++.+.++|++| |.++..
T Consensus 110 ~~~~~~~~d~~~~l~~i~r~Lk~g-G~~ii~ 139 (246)
T d2avna1 110 GDVLSYVENKDKAFSEIRRVLVPD-GLLIAT 139 (246)
T ss_dssp SSHHHHCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cchhhhhhhHHHHHHHHHhhcCcC-cEEEEE
Confidence 32 223477888999997 987654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=97.46 E-value=0.0002 Score=54.50 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=53.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hc--CCcE---EeCCCCCCchHHHHHHhhcC-
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NF--GVTE---FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~--g~~~---vi~~~~~~~~~~~~i~~~~~- 138 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +. +... ..|-.+ +++..+.+.+...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATTER 80 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC-HHHHHHHHHHHHHH
Confidence 5789999997 8999999999999999 9999999988766552 22 2221 124333 1233332332222
Q ss_pred -CCccEEEecCC
Q 025257 139 -GGVDYSFECIG 149 (255)
Q Consensus 139 -~~~d~v~d~~g 149 (255)
|++|+++++.|
T Consensus 81 ~G~iDiLVnnAG 92 (258)
T d1iy8a_ 81 FGRIDGFFNNAG 92 (258)
T ss_dssp HSCCSEEEECCC
T ss_pred hCCCCEEEECCc
Confidence 37999999887
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=97.45 E-value=0.00011 Score=55.93 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=64.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC-cE---EeCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGV-TE---FVNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~---vi~~~~~~~~~~~~i~~~~~-- 138 (255)
+|++|||+|+ +++|.+.+..+...|+ +|+++.++.++.+.+.+ .+. .. ..|.........+.+.+...
T Consensus 4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 82 (254)
T d1sbya1 4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence 5799999997 8999999999999999 98888777666554432 221 11 22322101223322332222
Q ss_pred CCccEEEecCCcHH-----------------HHHHHHHHhc-----cCCceEEEEccCC
Q 025257 139 GGVDYSFECIGNVS-----------------VMRAALECCH-----KGWGTSVIVGVAA 175 (255)
Q Consensus 139 ~~~d~v~d~~g~~~-----------------~~~~~~~~l~-----~~~G~~v~~g~~~ 175 (255)
|++|++++++|... .....++.+. .+ |+++.++...
T Consensus 83 g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~-g~Ii~isS~~ 140 (254)
T d1sbya1 83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPG-GIIANICSVT 140 (254)
T ss_dssp SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC-EEEEEECCGG
T ss_pred CCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCC-ceEEEEechh
Confidence 37999999998522 1344444452 33 7888886643
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.44 E-value=0.00044 Score=52.30 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=52.2
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC----CcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG----VTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g----~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
++||+|+ +++|++.++.+...|+ +|++.+++.++.+.++..+ .-.+.+..+ ...+.+.+.+.. |++|+++++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~-~~~~~~~~~~~~-G~iDiLVnN 78 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE-PAELIEAVTSAY-GQVDVLVSN 78 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS-HHHHHHHHHHHH-SCCCEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHH-HHHHHHHHHHHc-CCCCEEEEC
Confidence 6899997 8999999999999999 9999999888877775432 222333322 123444444443 379999987
Q ss_pred CC
Q 025257 148 IG 149 (255)
Q Consensus 148 ~g 149 (255)
.|
T Consensus 79 Ag 80 (252)
T d1zmta1 79 DI 80 (252)
T ss_dssp CC
T ss_pred Cc
Confidence 66
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=97.43 E-value=0.00013 Score=55.54 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=54.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----HhcCCcE---EeCCCCCCchHHHHHHhhc--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-----KNFGVTE---FVNPKDHDKPIQQVLVDLT--D 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-----~~~g~~~---vi~~~~~~~~~~~~i~~~~--~ 138 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+ ++.|... ..|-.+ +++..+.+.+.. -
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 85 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDADL 85 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 5789999997 8999999999999999 999999988766543 3345332 234333 123322233222 1
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
|++|+++++.|.
T Consensus 86 g~iDilVnnAg~ 97 (260)
T d1h5qa_ 86 GPISGLIANAGV 97 (260)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCcEecccccc
Confidence 379999998874
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=0.00015 Score=45.93 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=52.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~--~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
+|++|+|+|.|..|+++++++...|+ +|++.+.++. ..+.+++ +....+...+ ... +. .+|.++-+
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~--~~~---~~-----~~d~vi~S 71 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPGLDKLPE-AVERHTGSLN--DEW---LM-----AADLIVAS 71 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSCTTGGGSCT-TSCEEESBCC--HHH---HH-----HCSEEEEC
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCchhHHHHhh-ccceeecccc--hhh---hc-----cCCEEEEC
Confidence 46789999999999999999999999 9999997543 2222222 2233333222 211 11 47999988
Q ss_pred CCcHHHHHHHHHHhcc
Q 025257 148 IGNVSVMRAALECCHK 163 (255)
Q Consensus 148 ~g~~~~~~~~~~~l~~ 163 (255)
.|-+. -...+.....
T Consensus 72 PGi~~-~~~~~~~a~~ 86 (93)
T d2jfga1 72 PGIAL-AHPSLSAAAD 86 (93)
T ss_dssp TTSCT-TSHHHHHHHH
T ss_pred CCCCC-CCHHHHHHHH
Confidence 88665 3344444443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=97.42 E-value=0.0002 Score=55.44 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----HhcCCcE-E--eCCCCCCchHHHHHHhhc--C
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--D 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-----~~~g~~~-v--i~~~~~~~~~~~~i~~~~--~ 138 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ .+.|... . .|-.+ ++.....+.... .
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 101 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD-PDMVQNTVSELIKVA 101 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccC-hHHHHHHhhhhhhhc
Confidence 5799999997 9999999999999999 999999998776544 2334322 2 23333 122222222221 2
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
+++|+++++.|.
T Consensus 102 g~iDilvnnAg~ 113 (294)
T d1w6ua_ 102 GHPNIVINNAAG 113 (294)
T ss_dssp CSCSEEEECCCC
T ss_pred cccchhhhhhhh
Confidence 379999998884
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=97.42 E-value=0.00016 Score=55.06 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHH----HHhcCCcEE---eCCCCCCchHHHHHHhhcC--
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-KFDR----AKNFGVTEF---VNPKDHDKPIQQVLVDLTD-- 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~-~~~~----~~~~g~~~v---i~~~~~~~~~~~~i~~~~~-- 138 (255)
+|+++||+|+ +++|.+.++.+...|+ +|++++++.+ +.+. +++.|.+.. .|-.+ +++..+.+.+...
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 5789999997 8999999999999999 9999998754 3332 345564322 24333 1233222332221
Q ss_pred CCccEEEecCCc
Q 025257 139 GGVDYSFECIGN 150 (255)
Q Consensus 139 ~~~d~v~d~~g~ 150 (255)
|++|+++++.|.
T Consensus 84 G~iDiLVnnAG~ 95 (261)
T d1geea_ 84 GKLDVMINNAGL 95 (261)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEeecccee
Confidence 379999998885
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.41 E-value=0.00021 Score=54.89 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=54.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC--cE----EeCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV--TE----FVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~--~~----vi~~~~~~~~~~~~i~~~~~ 138 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. +.|. .. ..|-.+ +....+.+.+...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLA 80 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC-HHHHHHHHHHHHH
Confidence 5789999997 8999999999999999 9999999988776652 3332 11 234333 1223222332221
Q ss_pred --CCccEEEecCCc
Q 025257 139 --GGVDYSFECIGN 150 (255)
Q Consensus 139 --~~~d~v~d~~g~ 150 (255)
|.+|+++++.|.
T Consensus 81 ~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 81 KFGKIDILVNNAGA 94 (274)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCceEEEeeccc
Confidence 379999998773
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=97.41 E-value=0.0003 Score=53.12 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=67.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHhcCCcE---EeCCCCCCchHHHHHHhhcC--CCc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF--DRAKNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~--~~~~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~ 141 (255)
+|+.+||+|+ +++|.+.++.+...|+ +|++.++++++. +.+++.|... ..|-.+ +.+..+.+.+... |++
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~G~i 81 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGRC 81 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC-HHHHHHHHHHHHHHcCCC
Confidence 5789999997 8999999999999999 999999876432 3345666432 234333 1223222222221 379
Q ss_pred cEEEecCCcHH-------------------------HHHHHHHHhc-cCCceEEEEccCC
Q 025257 142 DYSFECIGNVS-------------------------VMRAALECCH-KGWGTSVIVGVAA 175 (255)
Q Consensus 142 d~v~d~~g~~~-------------------------~~~~~~~~l~-~~~G~~v~~g~~~ 175 (255)
|+++++.|... ..+..++.+. .++|+++.+++..
T Consensus 82 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~ 141 (247)
T d2ew8a1 82 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTT 141 (247)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred CEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccch
Confidence 99999988511 1344555553 2238999987653
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.0009 Score=47.84 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcC----C-cEEeCCCCCCchHHHHHHhhcCC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFG----V-TEFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g----~-~~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
-++.+|+|+|+|+.|.+++..+...|+.+++++.|++++.+.+. +++ . ..+.+..+ ...+.+.+.
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----- 89 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD-QQAFAEALA----- 89 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHHH-----
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc-ccchhhhhc-----
Confidence 36789999999999999999999999988999999887665442 222 1 12333332 022322222
Q ss_pred CccEEEecCCc
Q 025257 140 GVDYSFECIGN 150 (255)
Q Consensus 140 ~~d~v~d~~g~ 150 (255)
.+|++++|+..
T Consensus 90 ~~diiIN~Tp~ 100 (182)
T d1vi2a1 90 SADILTNGTKV 100 (182)
T ss_dssp TCSEEEECSST
T ss_pred ccceeccccCC
Confidence 58999998763
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=97.40 E-value=0.00031 Score=52.43 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=67.8
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~~ 135 (255)
|.+.+.++||++||-.|+|. |..+..+++ .+. +|++++.|+.-.+.+++ .+.+. ++.-.. .++ .
T Consensus 8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~-~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~--~~~-----~ 77 (234)
T d1xxla_ 8 MIKTAECRAEHRVLDIGAGA-GHTALAFSP-YVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA--ESL-----P 77 (234)
T ss_dssp HHHHHTCCTTCEEEEESCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT--TBC-----C
T ss_pred HHHHhCCCCCCEEEEeCCcC-cHHHHHHHH-hCC-eEEEEeCChhhhhhhhhhhccccccccccccccc--ccc-----c
Confidence 66889999999999999975 777777776 567 99999999887766643 33321 111110 111 1
Q ss_pred hcCCCccEEEecCC------cHHHHHHHHHHhccCCceEEEEc
Q 025257 136 LTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 136 ~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+.++.||+|+-+-. ....+..+.+.|+++ |+++...
T Consensus 78 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~~~~~~ 119 (234)
T d1xxla_ 78 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD-GRFLLVD 119 (234)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccceeeeeceeecccCHHHHHHHHHHeeCCC-cEEEEEE
Confidence 11237999985322 234588999999997 9887754
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.40 E-value=0.0002 Score=54.67 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=53.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC--c---E-EeCCCCCCchHHHHHHhhcC
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV--T---E-FVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~--~---~-vi~~~~~~~~~~~~i~~~~~ 138 (255)
+|+.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +.+. . . ..|-.+ +.+..+.+.+...
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLG 81 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC-HHHHHHHHHHHHH
Confidence 5789999997 8999999999999999 9999999988876652 2331 1 1 224333 1223222332221
Q ss_pred --CCccEEEecCCc
Q 025257 139 --GGVDYSFECIGN 150 (255)
Q Consensus 139 --~~~d~v~d~~g~ 150 (255)
|++|+++++.|.
T Consensus 82 ~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 82 KFGKLDILVNNAGA 95 (264)
T ss_dssp HHSCCCEEEECCC-
T ss_pred HhCCCCEeeccccc
Confidence 379999999874
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.40 E-value=0.001 Score=44.82 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=55.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+|+|.|+|.+|...++.+...|. .|++++.++++.+.+.+ ++...+. |..+ +++ +++..-..+|.++-++..
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~--~~~---l~~~~i~~a~~vv~~t~~ 75 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCTK--IKT---LEDAGIEDADMYIAVTGK 75 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTTS--HHH---HHHTTTTTCSEEEECCSC
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhhhccCcccc--hhh---hhhcChhhhhhhcccCCc
Confidence 68999999999999999999999 99999999999988854 5655443 3332 333 333322278999988887
Q ss_pred HH
Q 025257 151 VS 152 (255)
Q Consensus 151 ~~ 152 (255)
..
T Consensus 76 d~ 77 (132)
T d1lssa_ 76 EE 77 (132)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.37 E-value=0.00059 Score=46.12 Aligned_cols=73 Identities=21% Similarity=0.379 Sum_probs=55.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeC-CCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN-PKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
+++|.|.|.+|..+++.+...|. .|++++.++++.+.+++.|...++- ..+ ++..+... + ..+|.++-+++..
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~gd~~~--~~~l~~a~-i--~~a~~vi~~~~~~ 75 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANATE--ENELLSLG-I--RNFEYVIVAIGAN 75 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEECCTTC--TTHHHHHT-G--GGCSEEEECCCSC
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCcceeeeccc--chhhhccC-C--ccccEEEEEcCch
Confidence 57888999999999999999999 9999999999999998888765543 322 33333321 1 1588888777654
|
| >d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=7.3e-05 Score=53.64 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=30.8
Q ss_pred ccceeeEEEEcCCceEEcCCCCCcccccccccchhhhhhHHHhhcCCC
Q 025257 22 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE 69 (255)
Q Consensus 22 ~g~~ae~~~v~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~ 69 (255)
+|+|+||+++|+.+++++|+.... ++.. .++.++++++ .++.++
T Consensus 124 ~GgfaEy~~v~~~~~~~ip~~~~~--~~~a-~~l~~a~~a~-~~a~v~ 167 (179)
T d1uufa1 124 LGGYSQQIVVHERYVLRIRVADIE--MIRA-DQINEAYERM-LRGDVK 167 (179)
T ss_dssp CCSSBSEEEEEGGGCEECCCCCEE--EECG-GGHHHHHHHH-HTTCSS
T ss_pred ccccceEEEechHHEEECCCCCcC--hhHh-chhHHHHHHH-HHhCcc
Confidence 489999999999999999965432 2222 2567888876 445554
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.00037 Score=54.10 Aligned_cols=81 Identities=15% Similarity=0.262 Sum_probs=54.6
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hc--------CCcE---EeCCCCCCchHHHHHH
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF--------GVTE---FVNPKDHDKPIQQVLV 134 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~--------g~~~---vi~~~~~~~~~~~~i~ 134 (255)
.-+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. ++ +... ..|-.+ ++...+.+.
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~ 86 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVK 86 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC-HHHHHHHHH
Confidence 347899999997 8999999999999999 9999999988765542 21 2221 123333 123333333
Q ss_pred hhcC--CCccEEEecCCc
Q 025257 135 DLTD--GGVDYSFECIGN 150 (255)
Q Consensus 135 ~~~~--~~~d~v~d~~g~ 150 (255)
+... |++|+++++.|.
T Consensus 87 ~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 87 STLDTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHhCCeEEEEeeccc
Confidence 3221 379999998874
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.33 E-value=0.00018 Score=54.38 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=54.8
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCc---E-EeCCCCCCch---HHHHHHhhcCC-C
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVT---E-FVNPKDHDKP---IQQVLVDLTDG-G 140 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~---~-vi~~~~~~~~---~~~~i~~~~~~-~ 140 (255)
.++|||+|+ +++|.+.++.+...|+. +|+.+++++++.+.+++.... . ..|-.+ ++. +.+.+.+..+. +
T Consensus 3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~~~~~ 81 (250)
T d1yo6a1 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC-DKSLDTFVSKVGEIVGSDG 81 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTC-HHHHHHHHHHHHHHHGGGC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCC-HHHHHHHHHHHHHHhCCCC
Confidence 378999998 89999999888888862 688889999988888765421 1 224333 122 33444444444 6
Q ss_pred ccEEEecCCc
Q 025257 141 VDYSFECIGN 150 (255)
Q Consensus 141 ~d~v~d~~g~ 150 (255)
.|+++++.|.
T Consensus 82 idilinnAG~ 91 (250)
T d1yo6a1 82 LSLLINNAGV 91 (250)
T ss_dssp CCEEEECCCC
T ss_pred eEEEEEcCcc
Confidence 9999999884
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.33 E-value=0.00034 Score=50.31 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=66.3
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC-cEEeCCCCCCchHHHHHHhh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV-TEFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~-~~vi~~~~~~~~~~~~i~~~ 136 (255)
+....+++++++||=.|+|. |..++.+++. +. +|++++.+++..+.++ +.|. +.+- ... .+..+....
T Consensus 25 il~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~-~~~--gda~~~~~~- 97 (186)
T d1l3ia_ 25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVT-LME--GDAPEALCK- 97 (186)
T ss_dssp HHHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEE-EEE--SCHHHHHTT-
T ss_pred HHHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceE-EEE--Cchhhcccc-
Confidence 44667899999999999864 5556666653 55 9999999998877774 3554 2221 111 223222222
Q ss_pred cCCCccEEEecCCc---HHHHHHHHHHhccCCceEEEEc
Q 025257 137 TDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 137 ~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g 172 (255)
...+|.|+-.... +..++.+.+.|+++ |+++...
T Consensus 98 -~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~ 134 (186)
T d1l3ia_ 98 -IPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA 134 (186)
T ss_dssp -SCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred -cCCcCEEEEeCccccchHHHHHHHHHhCcC-CEEEEEe
Confidence 1279999854332 33477888899997 9887653
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.0012 Score=45.89 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=72.3
Q ss_pred hhHHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhc
Q 025257 59 LGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 59 ~~~l~~~~~-~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~ 137 (255)
+.++.+... .-.|++++|.|-|-+|...++.++..|+ +|++++..+.+.-.+.--|.. + ..+.+.+.
T Consensus 11 ~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~~-v-------~~~~~a~~--- 78 (163)
T d1li4a1 11 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGYE-V-------TTMDEACQ--- 78 (163)
T ss_dssp HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-E-------CCHHHHTT---
T ss_pred HHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCceE-e-------eehhhhhh---
Confidence 344555444 4589999999999999999999999999 999999988665444444543 2 22322222
Q ss_pred CCCccEEEecCCcHHHH-HHHHHHhccCCceEEEEccC
Q 025257 138 DGGVDYSFECIGNVSVM-RAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~~~-~~~~~~l~~~~G~~v~~g~~ 174 (255)
..|+++-++|....+ .+-++.|+++ ..++.+|-.
T Consensus 79 --~adivvtaTGn~~vI~~eh~~~MKdg-aIL~N~Ghf 113 (163)
T d1li4a1 79 --EGNIFVTTTGCIDIILGRHFEQMKDD-AIVCNIGHF 113 (163)
T ss_dssp --TCSEEEECSSCSCSBCHHHHTTCCTT-EEEEECSSS
T ss_pred --hccEEEecCCCccchhHHHHHhccCC-eEEEEeccc
Confidence 479999999986533 6778889995 666666654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.26 E-value=0.0028 Score=44.51 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=64.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCC-cEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGV-TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+|+|.|.|.+|...+.-++..|.. +|++++++++..+.+++.+. +......+ .......|+|+-|+..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~dlIila~p~ 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA----------KVEDFSPDFVMLSSPV 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG----------GGGGTCCSEEEECSCH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh----------hhhccccccccccCCc
Confidence 699999999999999999988842 79999999999999999885 44433221 1111157999988876
Q ss_pred HHH---HHHHHHHhccCCceEEEEccC
Q 025257 151 VSV---MRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 151 ~~~---~~~~~~~l~~~~G~~v~~g~~ 174 (255)
... ++...+.+.++ ..++.++..
T Consensus 73 ~~~~~vl~~l~~~~~~~-~ii~d~~s~ 98 (171)
T d2g5ca2 73 RTFREIAKKLSYILSED-ATVTDQGSV 98 (171)
T ss_dssp HHHHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred hhhhhhhhhhhcccccc-ccccccccc
Confidence 542 34445556664 666666653
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.26 E-value=0.00046 Score=52.26 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=51.6
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--CCcc
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GGVD 142 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~~d 142 (255)
.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.|... ..|-.+ ++...+.+.+... |++|
T Consensus 3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTCCC
T ss_pred EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHhCCcc
Confidence 4699997 8999999999999999 999999998877655 3445332 234333 1222222332221 3799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
++++++|.
T Consensus 81 ilVnnAG~ 88 (255)
T d1gega_ 81 VIVNNAGV 88 (255)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 99998874
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.25 E-value=0.0017 Score=44.84 Aligned_cols=83 Identities=24% Similarity=0.258 Sum_probs=58.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
+|.+.|+|.+|.+.++-+...|..++++.++++++.+.+++ .|.. +.+..+ . + ...|+||-|+-..
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~-~~~~~~--~-----v-----~~~Div~lavkP~ 68 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE-TSATLP--E-----L-----HSDDVLILAVKPQ 68 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE-EESSCC--C-----C-----CTTSEEEECSCHH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc-cccccc--c-----c-----cccceEEEecCHH
Confidence 58889999999988774444553399999999999888754 6654 333222 1 1 1479999888755
Q ss_pred HHHHHHHHHhccCCceEEE
Q 025257 152 SVMRAALECCHKGWGTSVI 170 (255)
Q Consensus 152 ~~~~~~~~~l~~~~G~~v~ 170 (255)
. ++..++-+++. +.++.
T Consensus 69 ~-~~~v~~~l~~~-~~~vi 85 (152)
T d1yqga2 69 D-MEAACKNIRTN-GALVL 85 (152)
T ss_dssp H-HHHHHTTCCCT-TCEEE
T ss_pred H-HHHhHHHHhhc-ccEEe
Confidence 5 88888887774 55443
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.25 E-value=6.9e-05 Score=55.73 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=59.1
Q ss_pred CCCCCCEEEEEcCChHHHHHHHH---HHHcCC---CeEEEEcCCcchHHHHHh---------cCCcEEeCCCCCCchHHH
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEG---AKAAGA---SRVIGIDIDPKKFDRAKN---------FGVTEFVNPKDHDKPIQQ 131 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l---~~~~g~---~~v~~~~~~~~~~~~~~~---------~g~~~vi~~~~~~~~~~~ 131 (255)
.++|+++||..|+|. |..++.+ +...|+ .+|+.++.+++-.+.+++ .+...+.... .+.
T Consensus 77 ~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~---~d~-- 150 (223)
T d1r18a_ 77 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE---GDG-- 150 (223)
T ss_dssp TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE---SCG--
T ss_pred ccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe---ccc--
Confidence 799999999999753 5444444 444442 179999988876665532 1211121111 111
Q ss_pred HHHhhcC-CCccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 132 VLVDLTD-GGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 132 ~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
...+.. +.||.|+-+.+-+..-+..++.|++| |+++..
T Consensus 151 -~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~g-G~lV~p 189 (223)
T d1r18a_ 151 -RKGYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVP 189 (223)
T ss_dssp -GGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEE
T ss_pred -ccccccccceeeEEEEeechhchHHHHHhcCCC-cEEEEE
Confidence 011111 27999997666655357788899997 998763
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.24 E-value=0.0031 Score=43.87 Aligned_cols=87 Identities=16% Similarity=0.236 Sum_probs=64.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+|-|.|.|.+|...++-+...|. +|++.++++++.+.+++.++.. . .+..+.++ ..|+++-|+..+.
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~-~------~~~~e~~~-----~~d~ii~~v~~~~ 68 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET-A------STAKAIAE-----QCDVIITMLPNSP 68 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-C------SSHHHHHH-----HCSEEEECCSSHH
T ss_pred EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhhh-c------ccHHHHHh-----CCCeEEEEcCCHH
Confidence 57889999999999988888999 9999999999999998888743 2 22333333 3799999998766
Q ss_pred HHHHHH-------HHhccCCceEEEEcc
Q 025257 153 VMRAAL-------ECCHKGWGTSVIVGV 173 (255)
Q Consensus 153 ~~~~~~-------~~l~~~~G~~v~~g~ 173 (255)
..+..+ ..++++ ..++.++.
T Consensus 69 ~v~~v~~~~~~~~~~~~~g-~iiid~sT 95 (161)
T d1vpda2 69 HVKEVALGENGIIEGAKPG-TVLIDMSS 95 (161)
T ss_dssp HHHHHHHSTTCHHHHCCTT-CEEEECSC
T ss_pred HHHHHHhCCcchhhccCCC-CEEEECCC
Confidence 555543 344564 56665544
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.23 E-value=7.8e-05 Score=56.06 Aligned_cols=74 Identities=20% Similarity=0.168 Sum_probs=51.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHH---HHHHhhcCCCccEEE
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ---QVLVDLTDGGVDYSF 145 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~---~~i~~~~~~~~d~v~ 145 (255)
+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.. ...|-.+ +++.. +.+.+.. |++|+++
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~----~~~Dv~~-~~~v~~~~~~~~~~~-g~iDiLV 78 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLFG----VEVDVTD-SDAVDRAFTAVEEHQ-GPVEVLV 78 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSEE----EECCTTC-HHHHHHHHHHHHHHH-SSCSEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCceE----EEEecCC-HHHHHHHHHHHHHhc-CCceEEE
Confidence 6789999997 8999999999999999 99999998765543211 2234333 12222 2333322 3799999
Q ss_pred ecCCc
Q 025257 146 ECIGN 150 (255)
Q Consensus 146 d~~g~ 150 (255)
+++|.
T Consensus 79 nnAG~ 83 (237)
T d1uzma1 79 SNAGL 83 (237)
T ss_dssp EECSC
T ss_pred eeecc
Confidence 98884
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=97.22 E-value=0.00078 Score=50.60 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=62.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH----HhcCCcE---EeCCCCCCchHHHHHHhhcC--CC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD--GG 140 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~-~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~~~i~~~~~--~~ 140 (255)
..+||+|+ +++|.+.++.+...|+ +|+..+ +++++.+.+ ++.|... ..|-.+ +++..+.+.+... |+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~ 79 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcCC
Confidence 36788887 8999999999999999 998865 455555544 3345332 224333 1223222232221 37
Q ss_pred ccEEEecCCcHH-------------------------HHHHHHHHh--ccCCceEEEEccC
Q 025257 141 VDYSFECIGNVS-------------------------VMRAALECC--HKGWGTSVIVGVA 174 (255)
Q Consensus 141 ~d~v~d~~g~~~-------------------------~~~~~~~~l--~~~~G~~v~~g~~ 174 (255)
+|+++++.|... ..+.+++.| +.+ |+++.++..
T Consensus 80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~ 139 (244)
T d1edoa_ 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASV 139 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCT
T ss_pred CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC-cEEEEEcCh
Confidence 999999888421 245556655 344 999999764
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.19 E-value=0.00064 Score=48.12 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=50.6
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-cC---CcEEeCCCCCCchHHHHHHhhcCCCcc
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FG---VTEFVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-~g---~~~vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
-..++++|+|+|+|+.+.+++..+...+. +++++.|+.++.+.+.+ +. ....+...+ .....+|
T Consensus 14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~-~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~-----------~~~~~~d 81 (171)
T d1p77a1 14 WLRPNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKELAERFQPYGNIQAVSMDS-----------IPLQTYD 81 (171)
T ss_dssp CCCTTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG-----------CCCSCCS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHcccCc-eeeeccchHHHHHHHHHHHhhccccchhhhcc-----------ccccccc
Confidence 34578899999999999999888877665 99999999988777633 22 211221111 1112699
Q ss_pred EEEecCCcH
Q 025257 143 YSFECIGNV 151 (255)
Q Consensus 143 ~v~d~~g~~ 151 (255)
++++|+...
T Consensus 82 iiIN~tp~g 90 (171)
T d1p77a1 82 LVINATSAG 90 (171)
T ss_dssp EEEECCCC-
T ss_pred eeeeccccc
Confidence 999998754
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00021 Score=53.34 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=64.9
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc---EEeCCCCCCchHHHHHHhhcCCCccEE
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT---EFVNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~---~vi~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
..+|.+||-.|+|. |..+..+++..+. +|++++.+++-.+.+++.... .+.. .. .+..........+.||.+
T Consensus 51 ~~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~fD~i 125 (229)
T d1zx0a1 51 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIP-LK--GLWEDVAPTLPDGHFDGI 125 (229)
T ss_dssp TTTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEE-EE--SCHHHHGGGSCTTCEEEE
T ss_pred ccCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhccccccc-cc--ccccccccccccccccce
Confidence 36788999999874 7788888886666 999999999988888654311 1110 00 223223333334479988
Q ss_pred E-ecCCc----------HHHHHHHHHHhccCCceEEEE
Q 025257 145 F-ECIGN----------VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 145 ~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+ |+... +..++.+.+.|++| |+++.+
T Consensus 126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG-G~~~~~ 162 (229)
T d1zx0a1 126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYC 162 (229)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred eecccccccccccccCHHHHHHHHHHHcCCC-cEEEEE
Confidence 5 65432 22367788999997 998764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=97.15 E-value=0.00011 Score=56.60 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=69.3
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~ 134 (255)
+.....+.++.+||=.|+|. |..+..+++..|+ +|++++.++...+.+++ .|.. .++...- .++
T Consensus 59 l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~--~~l----- 129 (282)
T d2o57a1 59 LAMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF--LEI----- 129 (282)
T ss_dssp HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT--TSC-----
T ss_pred HHHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccc--ccc-----
Confidence 44567899999999999974 7778888888899 99999999987777643 3432 1221111 111
Q ss_pred hhcCCCccEEEecCC------cHHHHHHHHHHhccCCceEEEEcc
Q 025257 135 DLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
....+.||+|+-.-. ....+..+.++|+++ |+++....
T Consensus 130 ~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg-G~l~~~~~ 173 (282)
T d2o57a1 130 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP 173 (282)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cccccccchhhccchhhhccCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 111237999974222 233578999999997 99887654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=97.15 E-value=0.00067 Score=50.23 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=67.2
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcE--EeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE--FVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~--vi~~~~~~~~~~~~i~~ 135 (255)
+.+..+++++++||-.|+| .|..+..+++ .|+ +|++++.+++-.+.++ +.+.+. ++.... .++ .
T Consensus 7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~-~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~--~~l-----~ 76 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATG-GGHVANAFAP-FVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA--EQM-----P 76 (231)
T ss_dssp HHHHHTCCSCCEEEEETCT-TCHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC---CC-----C
T ss_pred HHHhcCCCCcCEEEEeccc-CcHHHHHHHH-hCC-EEEEEECCHHHHhhhhhccccccccccccccccc--ccc-----c
Confidence 5577899999999999987 3666666664 577 9999999988776664 344332 221111 111 1
Q ss_pred hcCCCccEEEecCC------cHHHHHHHHHHhccCCceEEEEc
Q 025257 136 LTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 136 ~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+..+.||+|+-.-. ....+..+.++|++| |+++...
T Consensus 77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~i~~ 118 (231)
T d1vl5a_ 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD 118 (231)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhcCCC-cEEEEEe
Confidence 22237999974322 234589999999997 9988764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=97.14 E-value=0.0012 Score=49.32 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=64.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCe-------EEEEcCCcchHHHH----HhcCCcE---EeCCCCCCchHH---HHHH
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASR-------VIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQ---QVLV 134 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~-------v~~~~~~~~~~~~~----~~~g~~~---vi~~~~~~~~~~---~~i~ 134 (255)
.|||+|+ +++|.+.++.+...|+ + |+..++++++.+.+ ++.|... ..|-.+ +++.. +.+.
T Consensus 3 VvlITGas~GIG~aia~~la~~G~-~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~ 80 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAAR-HHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHIV 80 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTT-TCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCc-cccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHH
Confidence 4689997 8999999999999998 6 88889988877665 3345332 124333 12222 2333
Q ss_pred hhcCCCccEEEecCCcHH-------------------------HHHHHHHHhcc-CCceEEEEccCC
Q 025257 135 DLTDGGVDYSFECIGNVS-------------------------VMRAALECCHK-GWGTSVIVGVAA 175 (255)
Q Consensus 135 ~~~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~ 175 (255)
+.. |.+|+++++.|... ..+..++.|+. ++|+++.++...
T Consensus 81 ~~~-g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~ 146 (240)
T d2bd0a1 81 ERY-GHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVA 146 (240)
T ss_dssp HHT-SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred HHc-CCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechh
Confidence 322 37999999888411 24555566632 238999987654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=97.12 E-value=0.00065 Score=51.84 Aligned_cols=80 Identities=10% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH---hcC-C-cE-EeCCCCCCchHHHHHHhhcC-
Q 025257 69 EPGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK---NFG-V-TE-FVNPKDHDKPIQQVLVDLTD- 138 (255)
Q Consensus 69 ~~~~~vlI~G~-g--~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~---~~g-~-~~-vi~~~~~~~~~~~~i~~~~~- 138 (255)
-+|+++||+|+ | ++|.+.++.+...|+ +|+.++++++..+.++ +.+ . .. ..+..+ +.+..+.+.+...
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~ 80 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK-EEHFKSLYNSVKKD 80 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccc-hhhHHHHHHHHHHH
Confidence 46899999986 5 799999999999999 9999999875444443 222 2 22 223322 1233333322221
Q ss_pred -CCccEEEecCCc
Q 025257 139 -GGVDYSFECIGN 150 (255)
Q Consensus 139 -~~~d~v~d~~g~ 150 (255)
+.+|+++.+.|.
T Consensus 81 ~g~id~lV~nag~ 93 (274)
T d2pd4a1 81 LGSLDFIVHSVAF 93 (274)
T ss_dssp TSCEEEEEECCCC
T ss_pred cCCCCeEEeeccc
Confidence 379999988874
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00063 Score=50.54 Aligned_cols=106 Identities=13% Similarity=0.071 Sum_probs=66.4
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCcE------------EeCCCCCCchH-
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTE------------FVNPKDHDKPI- 129 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~~------------vi~~~~~~~~~- 129 (255)
....+.++.+||..|+|. |..+..+++ .|+ +|++++.|++..+.+++. +... .........++
T Consensus 39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 115 (229)
T d2bzga1 39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY 115 (229)
T ss_dssp HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence 445678999999999985 778778776 799 999999999988877542 2110 00000000000
Q ss_pred HHHHHhh---cCCCccEEEecCC--------cHHHHHHHHHHhccCCceEEEEcc
Q 025257 130 QQVLVDL---TDGGVDYSFECIG--------NVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 130 ~~~i~~~---~~~~~d~v~d~~g--------~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
...+.++ ..+.+|+|+++.. .+..+..+.++|+++ |+++....
T Consensus 116 ~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg-G~~~l~~~ 169 (229)
T d2bzga1 116 CCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK-FQYLLCVL 169 (229)
T ss_dssp ESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred EcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc-ceEEEEEc
Confidence 0001111 1227999998653 133467889999997 98766644
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=97.06 E-value=0.0017 Score=48.92 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcEEe--CCCCCCchHH---HHHHhhc
Q 025257 70 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFV--NPKDHDKPIQ---QVLVDLT 137 (255)
Q Consensus 70 ~~~~vlI~G~-g--~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~vi--~~~~~~~~~~---~~i~~~~ 137 (255)
+|+++||+|+ | ++|.+.++.+...|+ +|+...++++..+.++ +.+....+ |-.+ +++.. +.+.+..
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 84 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ-DEELDALFAGVKEAF 84 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccccCC-HHHHHHHHHHHHHhc
Confidence 5789999997 5 799999999999999 9999998876554442 23332222 3333 12222 2223322
Q ss_pred CCCccEEEecCCc
Q 025257 138 DGGVDYSFECIGN 150 (255)
Q Consensus 138 ~~~~d~v~d~~g~ 150 (255)
|+.|+.+++.|.
T Consensus 85 -g~iDilVnnag~ 96 (256)
T d1ulua_ 85 -GGLDYLVHAIAF 96 (256)
T ss_dssp -SSEEEEEECCCC
T ss_pred -CCceEEEecccc
Confidence 379999998863
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.05 E-value=0.0019 Score=44.63 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=64.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
+|.+.|+|.+|.+.+.-+...|. ++++..+++++.+.+ +++|.... .+..+.+. ..|+||-|+...
T Consensus 2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~-------~~~~~~~~-----~~dvIilavkp~ 68 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYA-------MSHQDLID-----QVDLVILGIKPQ 68 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBC-------SSHHHHHH-----TCSEEEECSCGG
T ss_pred EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeee-------chhhhhhh-----ccceeeeecchH
Confidence 57889999999998887777788 999999998887776 56676432 22333333 589999999765
Q ss_pred HHHHHHHHHhccCCceEEEEcc
Q 025257 152 SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 152 ~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
. ++..++.++++ ..++.+..
T Consensus 69 ~-~~~vl~~l~~~-~~iis~~a 88 (152)
T d2ahra2 69 L-FETVLKPLHFK-QPIISMAA 88 (152)
T ss_dssp G-HHHHHTTSCCC-SCEEECCT
T ss_pred h-HHHHhhhcccc-eeEecccc
Confidence 5 88888888885 77765543
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.00 E-value=0.003 Score=43.68 Aligned_cols=100 Identities=26% Similarity=0.334 Sum_probs=73.6
Q ss_pred HHHhhcC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC
Q 025257 61 AVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 61 ~l~~~~~-~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
++.+... +-.|++++|.|=|-+|.-.++-++.+|+ +|++++.+|-+.=.+.--|.. + ....+.+.
T Consensus 12 ~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf~-v-------~~~~~a~~----- 77 (163)
T d1v8ba1 12 GLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-V-------VTLDEIVD----- 77 (163)
T ss_dssp HHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-E-------CCHHHHTT-----
T ss_pred HHHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCCc-c-------CchhHccc-----
Confidence 3444444 4689999999999999999999999999 999999998665444444543 2 22323332
Q ss_pred CccEEEecCCcHHH-HHHHHHHhccCCceEEEEccCC
Q 025257 140 GVDYSFECIGNVSV-MRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 140 ~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
..|+++-++|.... -.+-++.|+.+ ..+...|-..
T Consensus 78 ~aDi~vTaTGn~~vI~~~h~~~MKdg-aIl~N~GHfd 113 (163)
T d1v8ba1 78 KGDFFITCTGNVDVIKLEHLLKMKNN-AVVGNIGHFD 113 (163)
T ss_dssp TCSEEEECCSSSSSBCHHHHTTCCTT-CEEEECSSTT
T ss_pred cCcEEEEcCCCCccccHHHHHHhhCC-eEEEeccccc
Confidence 58999999998764 35778899996 7777776643
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.0018 Score=52.08 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=69.7
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-----------C----CcEE-eCCCCC
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-----------G----VTEF-VNPKDH 125 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-----------g----~~~v-i~~~~~ 125 (255)
+.+..+++|++++|=+|+|. |..+.++|+..|+.+|++++.++...+.+++. | .... +.-...
T Consensus 208 Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~ 286 (406)
T d1u2za_ 208 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 286 (406)
T ss_dssp HHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred HHHHhCCCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence 56889999999999999984 99999999999976899999998777766431 1 1111 111110
Q ss_pred CchHHHHHHhhcCCCccEEEec-C-Cc---HHHHHHHHHHhccCCceEEEEcc
Q 025257 126 DKPIQQVLVDLTDGGVDYSFEC-I-GN---VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 126 ~~~~~~~i~~~~~~~~d~v~d~-~-g~---~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.+..+.... .+|+++-. . -. ...+...++.|++| |+++....
T Consensus 287 ~~~~~d~~~~----~adVV~inn~~f~~~l~~~L~ei~r~LKPG-GrIVs~~~ 334 (406)
T d1u2za_ 287 DNNRVAELIP----QCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLKS 334 (406)
T ss_dssp TCHHHHHHGG----GCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESSC
T ss_pred hccccccccc----cceEEEEecccCchHHHHHHHHHHHhcCCC-cEEEEecc
Confidence 1222222211 47788732 1 12 22367888899997 99987643
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.91 E-value=0.002 Score=46.66 Aligned_cols=82 Identities=26% Similarity=0.271 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
-.|.+|+|.|.|.+|..+++++...|+ +|++.+.++++......+|.+.+ +.. ++..-.+|+.+-|.
T Consensus 25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~~-~~~-----------~~~~~~~DI~iPcA 91 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-ALE-----------DVLSTPCDVFAPCA 91 (201)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CGG-----------GGGGCCCSEEEECS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhccccc-Ccc-----------ccccccceeeeccc
Confidence 377899999999999999999999999 99999999888888888887532 221 11112688888766
Q ss_pred CcHHHHHHHHHHhcc
Q 025257 149 GNVSVMRAALECCHK 163 (255)
Q Consensus 149 g~~~~~~~~~~~l~~ 163 (255)
.+...-+...+.++-
T Consensus 92 ~~~~I~~~~a~~i~a 106 (201)
T d1c1da1 92 MGGVITTEVARTLDC 106 (201)
T ss_dssp CSCCBCHHHHHHCCC
T ss_pred ccccccHHHHhhhhh
Confidence 654323455555543
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.001 Score=49.91 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=40.5
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhcCC
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV 116 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~g~ 116 (255)
-+|+.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++.
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~ 51 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN 51 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence 37899999997 8999999999999999 999999998877766 55653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.83 E-value=0.0052 Score=45.78 Aligned_cols=96 Identities=18% Similarity=0.280 Sum_probs=64.7
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCc-EEeCCCCCCchHHHHHHhh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVT-EFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~~~i~~~ 136 (255)
+.......+..+||-.|+|+ |..+..+++ .|+ +|++++.+++-.+.+++. +.. .++.-. +.++
T Consensus 33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d---------~~~l 100 (251)
T d1wzna1 33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGD---------VLEI 100 (251)
T ss_dssp HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESC---------GGGC
T ss_pred HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchheehh---------hhhc
Confidence 44556677888999999985 777777776 688 999999999888777542 321 122111 1222
Q ss_pred cCC-CccEEEecCCc---------HHHHHHHHHHhccCCceEEE
Q 025257 137 TDG-GVDYSFECIGN---------VSVMRAALECCHKGWGTSVI 170 (255)
Q Consensus 137 ~~~-~~d~v~d~~g~---------~~~~~~~~~~l~~~~G~~v~ 170 (255)
... .||+|+...+. ...++.+.++|+++ |+++.
T Consensus 101 ~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg-G~lii 143 (251)
T d1wzna1 101 AFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG-GVFIT 143 (251)
T ss_dssp CCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred ccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC-cEEEE
Confidence 223 79998864321 12477888999997 98865
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.82 E-value=0.0016 Score=48.92 Aligned_cols=77 Identities=9% Similarity=0.141 Sum_probs=50.2
Q ss_pred CEEEEEcC-ChHHHHHHHHHH---HcCCCeEEEEcCCcchHHHHHhc---CCc---EEeCCCCCCchH---HHHHHhhcC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAK---AAGASRVIGIDIDPKKFDRAKNF---GVT---EFVNPKDHDKPI---QQVLVDLTD 138 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~---~~g~~~v~~~~~~~~~~~~~~~~---g~~---~vi~~~~~~~~~---~~~i~~~~~ 138 (255)
++|||+|+ +++|++.++.+. ..|+ +|++.++++++.+.++++ +.. ...|-.+ ++.. .+.++....
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~~ 80 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIEGVTK 80 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHHHHHG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc-HHHHHHHHhhhHHHhh
Confidence 57999998 899999886554 4588 999999999887666432 221 1234333 2333 333333333
Q ss_pred C-CccEEEecCCc
Q 025257 139 G-GVDYSFECIGN 150 (255)
Q Consensus 139 ~-~~d~v~d~~g~ 150 (255)
. .+|+++++.|.
T Consensus 81 ~~~iDiLvnNAg~ 93 (248)
T d1snya_ 81 DQGLNVLFNNAGI 93 (248)
T ss_dssp GGCCSEEEECCCC
T ss_pred cCCcceEEeeccc
Confidence 3 79999998773
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.013 Score=45.63 Aligned_cols=103 Identities=14% Similarity=0.198 Sum_probs=69.6
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----------cCC--c--EEe--CCCC
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----------FGV--T--EFV--NPKD 124 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~-----------~g~--~--~vi--~~~~ 124 (255)
+.+..+++++++||-.|+|. |..+.++|+..++.++++++.+++..+.+++ +|. . .++ |..+
T Consensus 143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~ 221 (328)
T d1nw3a_ 143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS 221 (328)
T ss_dssp HHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred HHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence 56888999999999999874 8888999999998689999999987766632 121 1 122 2222
Q ss_pred CCchHHHHHHhhcCCCccEEEec-CC-cH---HHHHHHHHHhccCCceEEEEcc
Q 025257 125 HDKPIQQVLVDLTDGGVDYSFEC-IG-NV---SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 125 ~~~~~~~~i~~~~~~~~d~v~d~-~g-~~---~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.++.+.+. .+|+|+-. .- .+ ..+...++.|++| |+++..-.
T Consensus 222 --~~~~~~~~-----~advi~~~~~~f~~~~~~~l~e~~r~LKpG-g~iv~~~~ 267 (328)
T d1nw3a_ 222 --EEWRERIA-----NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSKP 267 (328)
T ss_dssp --HHHHHHHH-----HCSEEEECCTTTCHHHHHHHHHHHTTCCTT-CEEEESSC
T ss_pred --cccccccC-----cceEEEEcceecchHHHHHHHHHHHhCCCC-cEEEEecc
Confidence 33444333 26788732 11 12 2367788889997 99987643
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=96.82 E-value=0.011 Score=40.48 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=61.2
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCCcchH---HHHHhcCCcEEeCCCCCCchHH---------------
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAA--GASRVIGIDIDPKKF---DRAKNFGVTEFVNPKDHDKPIQ--------------- 130 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~---~~~~~~g~~~vi~~~~~~~~~~--------------- 130 (255)
++|.|+|+ |.+|..+.++.+.. .+ +|++..-...-. +.++++.+..++-..+ ....
T Consensus 3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~--~~~~~l~~~~~~~~~~v~~ 79 (150)
T d1r0ka2 3 RTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADP--SLYNDLKEALAGSSVEAAA 79 (150)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCG--GGHHHHHHHTTTCSSEEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccH--HHHHHHHHHhhhccccccc
Confidence 68999998 99999999999976 46 888887554322 2236777776643332 1111
Q ss_pred --HHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEE
Q 025257 131 --QVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSV 169 (255)
Q Consensus 131 --~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v 169 (255)
+.+.+.....+|+++.+..+...+.-.+..++.+ -++.
T Consensus 80 g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~g-k~ia 119 (150)
T d1r0ka2 80 GADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKG-KTVA 119 (150)
T ss_dssp SHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTT-SEEE
T ss_pred CccchheecccccceeeeecCchhHHHHHHHHHhcC-CEEE
Confidence 1111111125788888877766688888888884 4443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.80 E-value=0.013 Score=40.54 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=60.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
++|.+.|.|.+|...+.-+...|. +|.+.++++++.+.+.+.++... .+..+.+. ..|+++-|+...
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~-------~~~~e~~~-----~~diii~~v~~~ 68 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGASAA-------RSARDAVQ-----GADVVISMLPAS 68 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEEC-------SSHHHHHT-----SCSEEEECCSCH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhcccc-------chhhhhcc-----ccCeeeecccch
Confidence 368899999999998888888999 99999999999999888775422 22223332 467777777766
Q ss_pred HHHHHHH-------HHhccCCceEEEEcc
Q 025257 152 SVMRAAL-------ECCHKGWGTSVIVGV 173 (255)
Q Consensus 152 ~~~~~~~-------~~l~~~~G~~v~~g~ 173 (255)
...+..+ ..+.++ ..++.++.
T Consensus 69 ~~~~~v~~~~~~~~~~l~~g-~iiid~st 96 (162)
T d3cuma2 69 QHVEGLYLDDDGLLAHIAPG-TLVLECST 96 (162)
T ss_dssp HHHHHHHHSTTCHHHHSCTT-CEEEECSC
T ss_pred hhHHHHHhccccccccCCCC-CEEEECCC
Confidence 5444432 234453 45555544
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.003 Score=47.53 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=51.5
Q ss_pred CCCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcEE-eCCCCCCchHHHHHHhhcCC-
Q 025257 69 EPGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF-VNPKDHDKPIQQVLVDLTDG- 139 (255)
Q Consensus 69 ~~~~~vlI~G~-g--~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v-i~~~~~~~~~~~~i~~~~~~- 139 (255)
-+|+++||+|+ + ++|.+.+..+...|+ +|+..+++++..+.+. ..+.... ...........+...+....
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 81 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence 46899999987 5 688999999999999 9999999876555543 2343222 22221112233333333222
Q ss_pred -CccEEEecCCc
Q 025257 140 -GVDYSFECIGN 150 (255)
Q Consensus 140 -~~d~v~d~~g~ 150 (255)
..|..+++.+.
T Consensus 82 ~~~d~~v~~a~~ 93 (258)
T d1qsga_ 82 PKFDGFVHSIGF 93 (258)
T ss_dssp SSEEEEEECCCC
T ss_pred cccceEEEeecc
Confidence 78999987653
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.76 E-value=0.0019 Score=47.80 Aligned_cols=101 Identities=18% Similarity=0.293 Sum_probs=66.2
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----cCCc-EEeCCCCCCchHHHHHHhhc
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~i~~~~ 137 (255)
....++||++||=.|+|+ |..+..+++..|. .+|++++.+++..+.+++ .+.. .+..... ..+.....
T Consensus 67 ~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~----~~~~~~~~- 140 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDAT----KPEEYRAL- 140 (227)
T ss_dssp CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTT----CGGGGTTT-
T ss_pred cccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECC----Cccccccc-
Confidence 556799999999999875 8888899998864 389999999988777743 2322 2221111 11111111
Q ss_pred CCCccEEEecCCc----HHHHHHHHHHhccCCceEEEE
Q 025257 138 DGGVDYSFECIGN----VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 138 ~~~~d~v~d~~g~----~~~~~~~~~~l~~~~G~~v~~ 171 (255)
...+|+++..... ...+..+.+.|+++ |+++.+
T Consensus 141 ~~~vD~i~~d~~~~~~~~~~l~~~~~~Lkpg-G~lvi~ 177 (227)
T d1g8aa_ 141 VPKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA 177 (227)
T ss_dssp CCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ccceEEEEEEccccchHHHHHHHHHHhcccC-CeEEEE
Confidence 1268888854332 22367778899997 988765
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.00033 Score=49.17 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=57.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc-----EEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-----EFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~-----~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
+|+|+|+|.+|.+....+...|. +|..+++++++.+..+..+.. ..+. .+..+.+. .+|++|-+
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----~~D~iii~ 70 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLT-----ANDPDFLA-----TSDLLLVT 70 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEE-----ESCHHHHH-----TCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccc-----cchhhhhc-----ccceEEEe
Confidence 68999999999999888888999 999999988765544333321 1111 11112222 69999999
Q ss_pred CCcHHHHHHHHHH----hccCCceEEEEc
Q 025257 148 IGNVSVMRAALEC----CHKGWGTSVIVG 172 (255)
Q Consensus 148 ~g~~~~~~~~~~~----l~~~~G~~v~~g 172 (255)
+.... .+..++. +.++ ..++.+.
T Consensus 71 vka~~-~~~~~~~l~~~~~~~-~~Iv~~q 97 (167)
T d1ks9a2 71 LKAWQ-VSDAVKSLASTLPVT-TPILLIH 97 (167)
T ss_dssp SCGGG-HHHHHHHHHTTSCTT-SCEEEEC
T ss_pred ecccc-hHHHHHhhccccCcc-cEEeecc
Confidence 98866 5555544 4443 5566653
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.73 E-value=0.0013 Score=43.56 Aligned_cols=38 Identities=32% Similarity=0.555 Sum_probs=33.9
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
.++++++++|.|+|.+|.-++..++.+|. +|..+.+++
T Consensus 26 ~~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~ 63 (121)
T d1d7ya2 26 GLRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP 63 (121)
T ss_dssp HCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred hhhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc
Confidence 35677999999999999999999999999 999998765
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.71 E-value=0.016 Score=39.99 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=56.7
Q ss_pred CEEEEEcCChHHH-HHHHHHHHcCCCeEEEEcC-Ccc--hHHHHHhcCCcEEeCCCCCCchHHHHHHhhcC-CCccEEEe
Q 025257 72 SIVAVFGLGTVGL-AVAEGAKAAGASRVIGIDI-DPK--KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD-GGVDYSFE 146 (255)
Q Consensus 72 ~~vlI~G~g~vG~-~a~~l~~~~g~~~v~~~~~-~~~--~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~-~~~d~v~d 146 (255)
=+|.|.|+|.+|. ...++++.....++++++. +++ +.+++++.|..... ..+ +.+.+... .++|+||+
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~------~~~-d~l~~~~~~~~iDiVf~ 77 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY------AGV-EGLIKLPEFADIDFVFD 77 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES------SHH-HHHHHSGGGGGEEEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc------cce-eeeeecccccccCEEEE
Confidence 4789999999987 4678887664337777754 333 35667888876432 222 33333222 27999999
Q ss_pred cCCcHHHHHHH--HHHhccCCceEEEEc
Q 025257 147 CIGNVSVMRAA--LECCHKGWGTSVIVG 172 (255)
Q Consensus 147 ~~g~~~~~~~~--~~~l~~~~G~~v~~g 172 (255)
++......+.. .+.++.| -.++...
T Consensus 78 ATpag~h~~~~~~~~aa~~G-~~VID~s 104 (157)
T d1nvmb1 78 ATSASAHVQNEALLRQAKPG-IRLIDLT 104 (157)
T ss_dssp CSCHHHHHHHHHHHHHHCTT-CEEEECS
T ss_pred cCCchhHHHhHHHHHHHHcC-CEEEEcc
Confidence 98754435433 4446663 4555443
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.68 E-value=0.0036 Score=45.99 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=45.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
.+|||+|+ |.+|..++..+...|.. .|+...+++++.+.+.. +...+. |..+ .+ .+.+... ++|.|+.+.
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~--~~---~~~~~~~-~~d~vi~~a 76 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITD--AD---SINPAFQ-GIDALVILT 76 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTS--HH---HHHHHHT-TCSEEEECC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeecc--cc---ccccccc-cceeeEEEE
Confidence 58999997 99999999999888862 56667777766554422 333332 3222 22 2222222 589999887
Q ss_pred Cc
Q 025257 149 GN 150 (255)
Q Consensus 149 g~ 150 (255)
+.
T Consensus 77 ~~ 78 (252)
T d2q46a1 77 SA 78 (252)
T ss_dssp CC
T ss_pred ee
Confidence 53
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.64 E-value=0.0019 Score=50.54 Aligned_cols=103 Identities=28% Similarity=0.271 Sum_probs=62.6
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhc-CC-
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT-DG- 139 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~-~~- 139 (255)
..+++|++||=.++|+ |..++..++ .|+.+|+.++.+++..+.+++ .|...-+.... .+..+.+.... .+
T Consensus 141 ~~~~~g~~VLDl~~g~-G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~--~d~~~~~~~~~~~~~ 216 (324)
T d2as0a2 141 KWVQPGDRVLDVFTYT-GGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV--GSAFEEMEKLQKKGE 216 (324)
T ss_dssp GGCCTTCEEEETTCTT-THHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHTTC
T ss_pred hhcCCCCeeecccCcc-cchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee--chhhhhhHHHHhccC
Confidence 3468899999887643 444444444 477689999999998888743 45421111111 33333333321 23
Q ss_pred CccEEE-ecCCc--------------HHHHHHHHHHhccCCceEEEEcc
Q 025257 140 GVDYSF-ECIGN--------------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 140 ~~d~v~-d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.||+|+ |.... ...+..+++++++| |.++.+..
T Consensus 217 ~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s~ 264 (324)
T d2as0a2 217 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSC 264 (324)
T ss_dssp CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEEC
T ss_pred CCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEeC
Confidence 899998 43321 11356778899997 99888754
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.62 E-value=0.0072 Score=43.94 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=64.9
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc-EEeCCCCCCchHHHHHHhhcC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT-EFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~vi~~~~~~~~~~~~i~~~~~ 138 (255)
....++||++||=.|+|+ |..+..+++..+..+|++++.+++..+.++ +.+.. .++...+ .... .. ...
T Consensus 50 ~~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~-~~~~---~~-~~~ 123 (209)
T d1nt2a_ 50 HRLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDAS-KPWK---YS-GIV 123 (209)
T ss_dssp CCCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTT-CGGG---TT-TTC
T ss_pred ccCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeecc-Cccc---cc-ccc
Confidence 346789999999999875 677778888776558999999998877763 33322 2221111 0111 01 111
Q ss_pred CCccEEEecCCc----HHHHHHHHHHhccCCceEEEEc
Q 025257 139 GGVDYSFECIGN----VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 139 ~~~d~v~d~~g~----~~~~~~~~~~l~~~~G~~v~~g 172 (255)
..+|+++..... ...+..+.+.|+++ |+++..-
T Consensus 124 ~~vd~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 160 (209)
T d1nt2a_ 124 EKVDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIMV 160 (209)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ceEEEEEecccChhhHHHHHHHHHHHhccC-CeEEEEE
Confidence 157888754432 22367778899997 9887663
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.61 E-value=0.005 Score=44.94 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=60.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-EEeCCCCCCchHHHHHHhhcCCCcc
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
++++++||-+|+|. |..+..+++ .|. +|++++.|++..+.+++ .+.. ..+.... .++ ....+.+|
T Consensus 35 l~~~~~ILDiGcG~-G~~~~~la~-~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~--~~l-----~~~~~~fD 104 (226)
T d1ve3a1 35 MKKRGKVLDLACGV-GGFSFLLED-YGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA--RKL-----SFEDKTFD 104 (226)
T ss_dssp CCSCCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT--TSC-----CSCTTCEE
T ss_pred cCCCCEEEEECCCc-chhhhhHhh-hhc-ccccccccccchhhhhhhhcccccccccccccc--ccc-----cccCcCce
Confidence 57889999999975 777777776 588 99999999988877754 3321 1221111 111 11123799
Q ss_pred EEEecCC-----c---HHHHHHHHHHhccCCceEEEE
Q 025257 143 YSFECIG-----N---VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 143 ~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+|+-... . ...++.+.+.|++| |+++..
T Consensus 105 ~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~lii~ 140 (226)
T d1ve3a1 105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPS-GKFIMY 140 (226)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EEEEecchhhCChhHHHHHHHHHHHHcCcC-cEEEEE
Confidence 9874322 1 12478889999997 988654
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.0059 Score=46.69 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=59.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEE---EcCCcchHHHH----Hhc---CCc---EEeCCCCCCchHHHHHHhhc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIG---IDIDPKKFDRA----KNF---GVT---EFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~---~~~~~~~~~~~----~~~---g~~---~vi~~~~~~~~~~~~i~~~~ 137 (255)
+.|||+|+ +++|.+.++.+...|+ +|+. +.++.++.+.+ +++ +.. ...|-.+ ++...+.+.+..
T Consensus 3 kVvlITGassGIG~a~A~~la~~Ga-~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~ 80 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD-SKSVAAARERVT 80 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC-HHHHHHHHHTCT
T ss_pred CEEEEccCCCHHHHHHHHHHHHCCC-CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc-hHhhhhhhhhcc
Confidence 34678897 8999999999998998 6443 34444433322 333 222 1234443 233444444444
Q ss_pred CCCccEEEecCCcHH-------------------------HHHHHHHHhc-cCCceEEEEccCC
Q 025257 138 DGGVDYSFECIGNVS-------------------------VMRAALECCH-KGWGTSVIVGVAA 175 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~-~~~G~~v~~g~~~ 175 (255)
.|..|+++++.|... ..+..+..|. .++|+++.+++..
T Consensus 81 ~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~ 144 (285)
T d1jtva_ 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVG 144 (285)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGG
T ss_pred ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechh
Confidence 458999999887411 1344455553 2238999987653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.48 E-value=0.011 Score=43.70 Aligned_cols=101 Identities=16% Similarity=0.221 Sum_probs=64.0
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CC-cEEeCCCCCCchHHHHHHhhcC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GV-TEFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~-~~vi~~~~~~~~~~~~i~~~~~ 138 (255)
....++||++||=.|+|. |..+..+++......|++++.+++..+.+++. +. ..++..... .. ......
T Consensus 68 ~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~-~~---~~~~~~- 141 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK-PQ---EYANIV- 141 (230)
T ss_dssp CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTC-GG---GGTTTC-
T ss_pred HhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeecc-Cc---cccccc-
Confidence 556799999999999875 77778888865434999999999888877543 22 222222110 11 111111
Q ss_pred CCccEEEecCCc----HHHHHHHHHHhccCCceEEEE
Q 025257 139 GGVDYSFECIGN----VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 139 ~~~d~v~d~~g~----~~~~~~~~~~l~~~~G~~v~~ 171 (255)
..+|+++..... ...+..+.+.|+++ |.++..
T Consensus 142 ~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg-G~~~i~ 177 (230)
T d1g8sa_ 142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA 177 (230)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ceeEEeeccccchHHHHHHHHHHHHhcccC-ceEEEE
Confidence 156677654432 22367778889997 988765
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=96.47 E-value=0.0094 Score=44.85 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchH-HHH-HhcCCc---EEeCCCCC--CchHHHHHHhhc
Q 025257 68 VEPGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKF-DRA-KNFGVT---EFVNPKDH--DKPIQQVLVDLT 137 (255)
Q Consensus 68 ~~~~~~vlI~G~-g--~vG~~a~~l~~~~g~~~v~~~~~~~~~~-~~~-~~~g~~---~vi~~~~~--~~~~~~~i~~~~ 137 (255)
+-+|+++||+|+ | ++|.+.++-+...|+ +|+.+.++.++. +.+ ++++.. ...|-.+. .....+.+.+..
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~ 81 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI 81 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcc
Confidence 457899999984 4 599999999999999 999999887665 333 345532 12233320 022334444433
Q ss_pred CC--CccEEEecCC
Q 025257 138 DG--GVDYSFECIG 149 (255)
Q Consensus 138 ~~--~~d~v~d~~g 149 (255)
+. ..|+++++.|
T Consensus 82 ~~~~~ld~~i~~ag 95 (268)
T d2h7ma1 82 GAGNKLDGVVHSIG 95 (268)
T ss_dssp CTTCCEEEEEECCC
T ss_pred ccCCCcceeeeccc
Confidence 32 6899998887
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.47 E-value=0.0047 Score=47.37 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC---------Cc-EEeCCCCCCchHHHHHHhhcC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG---------VT-EFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g---------~~-~vi~~~~~~~~~~~~i~~~~~ 138 (255)
..-++|||.|+|. |..+-.++++.+..+|++++.+++-.+.+++.- .. .++. .+-.+.+++..+
T Consensus 79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~-----~Da~~~l~~~~~ 152 (290)
T d1xj5a_ 79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI-----GDGVAFLKNAAE 152 (290)
T ss_dssp SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE-----SCHHHHHHTSCT
T ss_pred CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE-----ccHHHHHhhccc
Confidence 3447999998764 556667888777668999999998888886642 11 1221 333445555444
Q ss_pred CCccEEE-ecCCc---------HHHHHHHHHHhccCCceEEEEc
Q 025257 139 GGVDYSF-ECIGN---------VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 139 ~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+.||+|+ |+... ..-++.+.++|+++ |.++.-.
T Consensus 153 ~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~ 195 (290)
T d1xj5a_ 153 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQA 195 (290)
T ss_dssp TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred cCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC-cEEEEec
Confidence 4899887 55431 22378889999997 9887754
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.38 E-value=0.0036 Score=41.06 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=33.1
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
.++..++|+|.|+|.+|.-+++.++.+|. +|..+.+++
T Consensus 18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~ 55 (117)
T d1onfa2 18 NIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN 55 (117)
T ss_dssp TCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred ccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence 44556899999999999999999999999 999999753
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.37 E-value=0.016 Score=36.32 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=51.7
Q ss_pred CCCCCEEEEEcCChHHHHH-HHHHHHcCCCeEEEEcCCc-chHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEE
Q 025257 68 VEPGSIVAVFGLGTVGLAV-AEGAKAAGASRVIGIDIDP-KKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 145 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a-~~l~~~~g~~~v~~~~~~~-~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~ 145 (255)
++..+++.+.|-|++|+.+ +++++..|. .|.+.+... ...+.+++.|+.....+.. .++ .+.|+|+
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~--~~i---------~~~d~vV 72 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAE--EHI---------EGASVVV 72 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCG--GGG---------TTCSEEE
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCcc--ccC---------CCCCEEE
Confidence 4566889999988889776 899999999 999999754 4456667789875554443 222 1578888
Q ss_pred ecCCcH
Q 025257 146 ECIGNV 151 (255)
Q Consensus 146 d~~g~~ 151 (255)
-..+-+
T Consensus 73 ~S~AI~ 78 (96)
T d1p3da1 73 VSSAIK 78 (96)
T ss_dssp ECTTSC
T ss_pred ECCCcC
Confidence 666543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=96.35 E-value=0.0047 Score=48.52 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=49.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hhc----CCcEEe-CCCCCCchHHHHHHhhcCC-Cc
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF----GVTEFV-NPKDHDKPIQQVLVDLTDG-GV 141 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~-~~~----g~~~vi-~~~~~~~~~~~~i~~~~~~-~~ 141 (255)
+|++|||+|+ |-+|..+++.+...|. +|+++++++.+...+ +.. +...+. |-.+ .+... +...+ .+
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d--~~~l~---~~~~~~~~ 80 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD--QNKLL---ESIREFQP 80 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC--HHHHH---HHHHHHCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEEEeeccC--hHhhh---hhhhhchh
Confidence 5789999998 9999999999999999 999999876543222 211 233332 3222 33222 22223 68
Q ss_pred cEEEecCCc
Q 025257 142 DYSFECIGN 150 (255)
Q Consensus 142 d~v~d~~g~ 150 (255)
|+++.+++.
T Consensus 81 ~~v~~~aa~ 89 (356)
T d1rkxa_ 81 EIVFHMAAQ 89 (356)
T ss_dssp SEEEECCSC
T ss_pred hhhhhhhcc
Confidence 999987774
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.35 E-value=0.0064 Score=44.80 Aligned_cols=105 Identities=16% Similarity=0.290 Sum_probs=67.1
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhh-
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDL- 136 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~- 136 (255)
...+..+.++||-+|.+ +|..++.+++.+ +. +++.++.+++..+.+++ .|...-+.... .+..+.+.++
T Consensus 53 ~L~~~~~~k~iLEiGT~-~GyStl~la~al~~~g-~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~--g~a~~~L~~l~ 128 (227)
T d1susa1 53 MLLKLINAKNTMEIGVY-TGYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFRE--GPALPVLDEMI 128 (227)
T ss_dssp HHHHHHTCCEEEEECCG-GGHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHH
T ss_pred HHHHhcCCCcEEEecch-hhhhHHHHHhhCCCCc-EEEEEeccchhHHHHHHHHHHhccccceeeee--hHHHHHHHHHH
Confidence 33444556899999975 478888888876 34 99999999988777743 56432222111 2333333332
Q ss_pred ----cCCCccEEE-ecCCc--HHHHHHHHHHhccCCceEEEEcc
Q 025257 137 ----TDGGVDYSF-ECIGN--VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 137 ----~~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
..+.||.|| |+--. ...++.+++++++| |.++.=..
T Consensus 129 ~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~g-Giii~DNv 171 (227)
T d1susa1 129 KDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDNT 171 (227)
T ss_dssp HCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEETT
T ss_pred hccccCCceeEEEeccchhhhHHHHHHHHhhcCCC-cEEEEccC
Confidence 223799998 54433 33488999999996 87765433
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=96.29 E-value=0.0038 Score=48.97 Aligned_cols=46 Identities=30% Similarity=0.343 Sum_probs=38.9
Q ss_pred cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 025257 66 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 112 (255)
Q Consensus 66 ~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~ 112 (255)
.-+++|++|||+|+ |-+|..++..+...|. +|++++++.++.+.++
T Consensus 6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~ 52 (342)
T d1y1pa1 6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ 52 (342)
T ss_dssp CSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred CCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence 34678999999998 8999999988888899 9999999887766553
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.26 E-value=0.0023 Score=45.79 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=31.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
+++|+|.|+|+.|+.++..|+..|...|+++++++.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 578999999999999999999999845888887654
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.25 E-value=0.016 Score=41.57 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=59.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|.|.|.|.+|...+++++..|. +|++.++..+..... .+.. . .++.+.+.+ .|++.-++.
T Consensus 42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~~~~~--~~~~----~----~~l~~~l~~-----sDii~~~~p 105 (197)
T d1j4aa1 42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPELEK--KGYY----V----DSLDDLYKQ-----ADVISLHVP 105 (197)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHH--TTCB----C----SCHHHHHHH-----CSEEEECSC
T ss_pred cCCeEEEecccccchhHHHhHhhhcc-cccccCccccccccc--ceee----e----ccccccccc-----cccccccCC
Confidence 47899999999999999999999999 999998765433222 2211 1 334444443 688876544
Q ss_pred -cHH----HHHHHHHHhccCCceEEEEcc
Q 025257 150 -NVS----VMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 -~~~----~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+. .-...++.|+++ ..+|-++-
T Consensus 106 lt~~T~~li~~~~l~~mk~~-a~lIN~sR 133 (197)
T d1j4aa1 106 DVPANVHMINDESIAKMKQD-VVIVNVSR 133 (197)
T ss_dssp CCGGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred ccccccccccHHHHhhhCCc-cEEEecCc
Confidence 222 125677888886 77776644
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.20 E-value=0.016 Score=41.40 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=62.9
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc----EEeCCCCCCchHHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT----EFVNPKDHDKPIQQVL 133 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~vi~~~~~~~~~~~~i 133 (255)
|.+.....++++||-.|+|. |..++.+++ .+. +|++++.+++..+.+++ .+.. .++.. ++.
T Consensus 44 Li~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~-----d~~--- 112 (194)
T d1dusa_ 44 LVENVVVDKDDDILDLGCGY-GVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHS-----DLY--- 112 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC-----STT---
T ss_pred HHHhCCcCCCCeEEEEeecC-ChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEc-----chh---
Confidence 55777889999999999864 666666665 566 99999999988777753 2321 12211 111
Q ss_pred HhhcCCCccEEEecC----Cc---HHHHHHHHHHhccCCceEEEE
Q 025257 134 VDLTDGGVDYSFECI----GN---VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 134 ~~~~~~~~d~v~d~~----g~---~~~~~~~~~~l~~~~G~~v~~ 171 (255)
....++.||+|+-.. +. ...++.+.+.|+++ |+++..
T Consensus 113 ~~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 156 (194)
T d1dusa_ 113 ENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVV 156 (194)
T ss_dssp TTCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred hhhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC-cEEEEE
Confidence 112223799998522 22 12367778899997 987654
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.16 E-value=0.072 Score=35.48 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=43.6
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+|.|.|+ |-+|...++..... +. ++++.....+........ ++|+++|++..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~~d~~~~~~~~~~~-------------------------~~DvvIDFS~p 54 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAELDAGDPLSLLTDG-------------------------NTEVVIDFTHP 54 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTS-EEEEEECTTCCTHHHHTT-------------------------TCSEEEECCCT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCchhhhccc-------------------------cCCEEEEcccH
Confidence 5889997 99999988877654 56 666554322222222222 46666666655
Q ss_pred HHHHHHHHHHhccCCceEEEEccCC
Q 025257 151 VSVMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 151 ~~~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+. ....++.+... |.-+.+|.++
T Consensus 55 ~~-~~~~~~~~~~~-~~~~ViGTTG 77 (135)
T d1yl7a1 55 DV-VMGNLEFLIDN-GIHAVVGTTG 77 (135)
T ss_dssp TT-HHHHHHHHHHT-TCEEEECCCC
T ss_pred HH-HHHHHHHHHhc-CCCEEEeccc
Confidence 55 44444444443 5555555543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.16 E-value=0.0051 Score=44.01 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=57.7
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE-----EeCCCC--CCchHHHHHHhhcCCCccEE
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-----FVNPKD--HDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-----vi~~~~--~~~~~~~~i~~~~~~~~d~v 144 (255)
.+|.|+|+|..|.+.+.++...|. +|...+++++..+.+++-+... +.-++. ...++.+.+. +.|++
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~-----~ad~i 81 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN-----GAEII 81 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT-----TCSCE
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccC-----CCCEE
Confidence 369999999999999999988888 9999999998888885433110 000000 0023444443 58999
Q ss_pred EecCCcHHHHHHHHHHhc
Q 025257 145 FECIGNVSVMRAALECCH 162 (255)
Q Consensus 145 ~d~~g~~~~~~~~~~~l~ 162 (255)
+-++.... ++..++.+.
T Consensus 82 iiavPs~~-~~~~~~~~~ 98 (189)
T d1n1ea2 82 LFVIPTQF-LRGFFEKSG 98 (189)
T ss_dssp EECSCHHH-HHHHHHHHC
T ss_pred EEcCcHHH-HHHHHHHHH
Confidence 99998776 777666543
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=96.12 E-value=0.0092 Score=39.11 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=37.2
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
+.+.....++++|+|.|+|.+|+-.+..++.+|. +|..+.+++
T Consensus 13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~ 55 (121)
T d1mo9a2 13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE 55 (121)
T ss_dssp HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence 3455667788999999999999999999999999 999998764
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.11 E-value=0.0039 Score=46.66 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
..++|+|.|+|+.|++++..++..|. +|+++++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 35789999999999999999999999 999999754
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=96.08 E-value=0.013 Score=43.86 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=30.3
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 107 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~ 107 (255)
..||+|+ +++|.+.++.+...|+ +|+.++++.++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~ 37 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEG 37 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH
Confidence 5689997 8999999999999999 99999988654
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=96.08 E-value=0.008 Score=46.59 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=45.6
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC--cch---HHHHHhcC-CcEEe-CCCCCCchHHHHHHhhcCCCccE
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID--PKK---FDRAKNFG-VTEFV-NPKDHDKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~--~~~---~~~~~~~g-~~~vi-~~~~~~~~~~~~i~~~~~~~~d~ 143 (255)
.+|||+|+ |-+|..+++.+...|. +|+++++- ..+ .+.+.+.+ ...+. |-.+ ...+.+.+... .+|+
T Consensus 1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~-~~~l~~~~~~~---~~d~ 75 (338)
T d1orra_ 1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN-KNDVTRLITKY---MPDS 75 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHH---CCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccCC-HHHHHHHHHhc---CCce
Confidence 37999998 9999999998888999 99998631 222 23333333 33332 2222 12233333322 6899
Q ss_pred EEecCCc
Q 025257 144 SFECIGN 150 (255)
Q Consensus 144 v~d~~g~ 150 (255)
|+.+.+.
T Consensus 76 Vih~aa~ 82 (338)
T d1orra_ 76 CFHLAGQ 82 (338)
T ss_dssp EEECCCC
T ss_pred EEeeccc
Confidence 9998763
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0067 Score=45.93 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCC--cEEe-CCCCCCchHHHHHHhhcCCCcc
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGV--TEFV-NPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~--~~vi-~~~~~~~~~~~~i~~~~~~~~d 142 (255)
...++.+||-.|+|. |..+..+++.. +. ++++++.+++..+.+++... ..+. |..+ .+ +..+.||
T Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~--l~-------~~~~sfD 149 (268)
T d1p91a_ 81 LDDKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASSHR--LP-------FSDTSMD 149 (268)
T ss_dssp SCTTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCTTS--CS-------BCTTCEE
T ss_pred cCCCCCEEEEeCCCC-cHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeeehhh--cc-------CCCCCEE
Confidence 356778999999875 66777777765 56 99999999998888876442 2222 2211 11 1123799
Q ss_pred EEEecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 143 YSFECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 143 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+|+....... ++++.+.|+++ |.++....
T Consensus 150 ~v~~~~~~~~-~~e~~rvLkpg-G~l~~~~p 178 (268)
T d1p91a_ 150 AIIRIYAPCK-AEELARVVKPG-GWVITATP 178 (268)
T ss_dssp EEEEESCCCC-HHHHHHHEEEE-EEEEEEEE
T ss_pred EEeecCCHHH-HHHHHHHhCCC-cEEEEEee
Confidence 9997655544 88999999997 99887743
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0047 Score=43.79 Aligned_cols=38 Identities=34% Similarity=0.385 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
....++|+|.|+|+.|+.++..+..+|. +|+++++.++
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~ 77 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSE 77 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCc
Confidence 3456899999999999999999999999 9999997653
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.05 E-value=0.0048 Score=40.75 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=30.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
++++|.|+|.+|+-+++.+..+|. +|.++.+++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence 689999999999999999999999 999998753
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0025 Score=47.22 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=47.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
++.+|||+|+ |-+|...++.+...|. .+|++++|++.+...-+.-..... .|..+ .+.+.+... ++|+++.
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~-----~~~~~~~~~-~~d~vi~ 86 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK-----LDDYASAFQ-GHDVGFC 86 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG-----GGGGGGGGS-SCSEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccc-----ccccccccc-ccccccc
Confidence 3478999998 9999999988887774 389999987644322211122222 22221 122222222 6999999
Q ss_pred cCCc
Q 025257 147 CIGN 150 (255)
Q Consensus 147 ~~g~ 150 (255)
|+|.
T Consensus 87 ~~~~ 90 (232)
T d2bkaa1 87 CLGT 90 (232)
T ss_dssp CCCC
T ss_pred cccc
Confidence 9885
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.03 E-value=0.0076 Score=39.32 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=30.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
++++|.|+|.+|+-+++.+..+|. +|..+.+.+
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGT-KVTILEGAG 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CeEEEECCCccceeeeeeeccccc-EEEEEEecc
Confidence 789999999999999999999999 999998764
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.039 Score=37.56 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=60.8
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCCcchHHH---HHhcCCcEEeCCCCCCchH---H-------------
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAA--GASRVIGIDIDPKKFDR---AKNFGVTEFVNPKDHDKPI---Q------------- 130 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~---~~~~g~~~vi~~~~~~~~~---~------------- 130 (255)
+|.|+|+ |.+|..+..+.+.. .. +|++.+-+..-..+ ++++.+..++-.++ ... .
T Consensus 3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~--~~~~~l~~~l~~~~~~~~~~ 79 (151)
T d1q0qa2 3 QLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDE--ASAKLLKTMLQQQGSRTEVL 79 (151)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSH--HHHHHHHHHHHHTTCCCEEE
T ss_pred eEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccH--HHHHHHHHHhhhhccccccc
Confidence 6899998 99999999999987 35 78877654433222 25677776654432 211 1
Q ss_pred ---HHHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEE
Q 025257 131 ---QVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSV 169 (255)
Q Consensus 131 ---~~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v 169 (255)
+.+.+.... .+|+|+.+..+-..++-.+..++.+ -++.
T Consensus 80 ~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~g-k~ia 121 (151)
T d1q0qa2 80 SGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAG-KTIL 121 (151)
T ss_dssp ESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTT-CEEE
T ss_pred cChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcC-CeEE
Confidence 122222223 6888988888777788888888884 4443
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0061 Score=39.82 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=30.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
++|+|.|+|.+|+-+++.++.+|. +|.++.+.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence 689999999999999999999999 999998764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.02 E-value=0.028 Score=34.55 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=48.5
Q ss_pred CEEEEEcCChHHHHH-HHHHHHcCCCeEEEEcCCc-chHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 72 SIVAVFGLGTVGLAV-AEGAKAAGASRVIGIDIDP-KKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a-~~l~~~~g~~~v~~~~~~~-~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+|-+.|-|++|+.+ +++++..|+ .|.+.+..+ +..+.+++.|+.....+.. .++ .+.|+|+-+..
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~--~~i---------~~~d~vV~SsA 69 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHSA--DNW---------YDPDLVIKTPA 69 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCCT--TSC---------CCCSEEEECTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeecc--ccc---------CCCCEEEEecC
Confidence 367777988889864 699999999 999999876 4556678899875444332 222 25788887665
Q ss_pred cH
Q 025257 150 NV 151 (255)
Q Consensus 150 ~~ 151 (255)
-+
T Consensus 70 I~ 71 (89)
T d1j6ua1 70 VR 71 (89)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=96.00 E-value=0.01 Score=42.51 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=60.4
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCcEE----eCCCCCCchHHHHHHhhc
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF----VNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v----i~~~~~~~~~~~~i~~~~ 137 (255)
.+..++.+||-+|+| .|..+..+++ .|+ +|++++.+++..+.++ ..+.+.+ .+..+ .. .
T Consensus 26 ~~~~~~grvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~--~~--------~ 92 (198)
T d2i6ga1 26 AKVVAPGRTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT--LT--------F 92 (198)
T ss_dssp HTTSCSCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT--CC--------C
T ss_pred cccCCCCcEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhheeccc--cc--------c
Confidence 333334589999997 4777777765 688 9999999998877764 3444321 12111 11 1
Q ss_pred CCCccEEEecCC-----c---HHHHHHHHHHhccCCceEEEEcc
Q 025257 138 DGGVDYSFECIG-----N---VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 138 ~~~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.||+|+...- . +..++.+.++|+++ |.++....
T Consensus 93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 135 (198)
T d2i6ga1 93 DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPG-GYNLIVAA 135 (198)
T ss_dssp CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 127999985221 1 23477888889997 98887644
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=95.98 E-value=0.0027 Score=46.77 Aligned_cols=95 Identities=16% Similarity=0.227 Sum_probs=62.1
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHH---cCCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHHhh
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKA---AGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~---~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~~~ 136 (255)
.++++.+||-.|+|. |..+..+++. .++ +|++++.|++-.+.+++ .+.. ...+.. ..+.
T Consensus 36 ~~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d---------~~~~ 104 (225)
T d1im8a_ 36 FVTADSNVYDLGCSR-GAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND---------IRHV 104 (225)
T ss_dssp HCCTTCEEEEESCTT-CHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSC---------TTTC
T ss_pred hcCCCCEEEEeccch-hhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccch---------hhcc
Confidence 368999999999874 6677777764 477 99999999998888854 2321 112211 1112
Q ss_pred cCCCccEEEecCC--------cHHHHHHHHHHhccCCceEEEEcc
Q 025257 137 TDGGVDYSFECIG--------NVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 137 ~~~~~d~v~d~~g--------~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
..+.+|+++-+.. ....++.+.+.|+++ |.++....
T Consensus 105 ~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~~ 148 (225)
T d1im8a_ 105 EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSEK 148 (225)
T ss_dssp CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeecccc
Confidence 1125676654322 123588999999997 99987643
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=95.97 E-value=0.012 Score=43.23 Aligned_cols=48 Identities=27% Similarity=0.389 Sum_probs=41.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hcCCc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVT 117 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~-~~g~~ 117 (255)
-.|.+|+|.|.|.||..+++++...|+ ++++++.++.+.+.+. +.|..
T Consensus 37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~ 85 (230)
T d1leha1 37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD 85 (230)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCc
Confidence 478999999999999999999999999 9999998888877664 45554
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.96 E-value=0.03 Score=39.15 Aligned_cols=99 Identities=23% Similarity=0.274 Sum_probs=62.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcC-CCeEEEEc-CCc-chHHHHHhcCCcEEeCCCCCCchHHHH-------HHhhcCCCcc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAG-ASRVIGID-IDP-KKFDRAKNFGVTEFVNPKDHDKPIQQV-------LVDLTDGGVD 142 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~-~~~-~~~~~~~~~g~~~vi~~~~~~~~~~~~-------i~~~~~~~~d 142 (255)
+|.|.|.|-+|...++.+.... . +++++- .++ .....+.+.+.+......+....+.+. +.+.. .++|
T Consensus 4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vD 81 (172)
T d2czca2 4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL-EKVD 81 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH-TTCS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh-ccCC
Confidence 6889999999999888776553 5 666664 333 334455666655433221100111110 01111 1699
Q ss_pred EEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 143 YSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 143 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+|+||+|.-...+.+-..+..| -+.|..+..
T Consensus 82 vViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~ 112 (172)
T d2czca2 82 IIVDATPGGIGAKNKPLYEKAG-VKAIFQGGE 112 (172)
T ss_dssp EEEECCSTTHHHHHHHHHHHHT-CEEEECTTS
T ss_pred EEEECCCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence 9999999877778888899996 888888764
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.95 E-value=0.035 Score=38.83 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=38.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 116 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~ 116 (255)
.+|-++|.|.+|...+.-+...|. +|++.++++++.+.+.+.++
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 46 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA 46 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcc
Confidence 468899999999999988888999 99999999999998866543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0036 Score=48.60 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=32.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcch
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 107 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~ 107 (255)
+.+...+.++++||..|+| .|..++.+|+ .|+.+|++++.++.-
T Consensus 27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~ 70 (311)
T d2fyta1 27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEIL 70 (311)
T ss_dssp HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHH
T ss_pred HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHH
Confidence 3344466789999999987 4666665555 687689999988753
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.91 E-value=0.0015 Score=50.34 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=61.9
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCc-----EEeCCCCCCchHHHHHH
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVT-----EFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~-----~vi~~~~~~~~~~~~i~ 134 (255)
...+.+++.+||-.|+|. |..+..|++ .|+ +|++++.|++-.+.+++. +.. ..+.. .++...-.
T Consensus 50 ~~l~~~~~~~vLD~GcG~-G~~~~~la~-~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 122 (292)
T d1xvaa_ 50 GLLRQHGCHRVLDVACGT-GVDSIMLVE-EGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE----ANWLTLDK 122 (292)
T ss_dssp HHHHHTTCCEEEESSCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEE----CCGGGHHH
T ss_pred HHhhhcCCCEEEEecCCC-cHHHHHHHH-cCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeee----cccccccc
Confidence 334445678999999875 778888877 488 999999999877777432 211 01110 11111111
Q ss_pred hhcCC-CccEEEecCCc--------------HHHHHHHHHHhccCCceEEE
Q 025257 135 DLTDG-GVDYSFECIGN--------------VSVMRAALECCHKGWGTSVI 170 (255)
Q Consensus 135 ~~~~~-~~d~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~ 170 (255)
....+ .+|.|+..... ...++.+.+.|++| |.++.
T Consensus 123 ~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~ 172 (292)
T d1xvaa_ 123 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG-GLLVI 172 (292)
T ss_dssp HSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEE
T ss_pred ccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC-cEEEE
Confidence 22223 79999853211 12478899999997 98876
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.84 E-value=0.011 Score=38.80 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=30.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
++++|.|+|.+|+-.++.++.+|. +|.++.+++
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence 789999999999999999999999 999998753
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.81 E-value=0.0084 Score=39.52 Aligned_cols=32 Identities=22% Similarity=0.098 Sum_probs=29.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
++++|.|+|.+|+-.++.++.+|. +|..+.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence 579999999999999999999999 99998754
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.81 E-value=0.13 Score=34.77 Aligned_cols=87 Identities=10% Similarity=-0.028 Sum_probs=57.4
Q ss_pred CEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-C-ccEEEecC
Q 025257 72 SIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G-VDYSFECI 148 (255)
Q Consensus 72 ~~vlI~G-~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~-~d~v~d~~ 148 (255)
++|.|.| .|.+|...+..++..|. .|.+.+++++........+++.++.... .....+.+.+.... . =.+++|+.
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~v~~~~~~~~~~~~iiiD~~ 87 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP-INLTLETIERLKPYLTENMLLADLT 87 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC-GGGHHHHHHHHGGGCCTTSEEEECC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc-hhhheeeeecccccccCCceEEEec
Confidence 5899999 59999999999999999 9999999887766665566666554332 13344444444332 2 24677877
Q ss_pred CcHHHHHHHHHH
Q 025257 149 GNVSVMRAALEC 160 (255)
Q Consensus 149 g~~~~~~~~~~~ 160 (255)
+........+..
T Consensus 88 Svk~~~~~~~~~ 99 (152)
T d2pv7a2 88 SVKREPLAKMLE 99 (152)
T ss_dssp SCCHHHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 754433333333
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0094 Score=42.68 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=35.1
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 111 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~ 111 (255)
++|.|.|+|.+|...++++...|. +|+..+++++..+.+
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a 43 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS 43 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHH
Confidence 589999999999999999999999 999999998876655
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.81 E-value=0.0028 Score=47.85 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=60.5
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHHhhcCC
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDLTDG 139 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~~~~~~ 139 (255)
.+++|++||-.|+|. |..++.+|+.-++ +|++++.+++..+.+++ .|.+ .++.-+. +++...
T Consensus 104 ~~~~g~~VlD~~aG~-G~~~l~~a~~~~~-~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~---------~~~~~~ 172 (260)
T d2frna1 104 VAKPDELVVDMFAGI-GHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---------RDFPGE 172 (260)
T ss_dssp HCCTTCEEEETTCTT-TTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---------TTCCCC
T ss_pred hcCCccEEEECcceE-cHHHHHHHHhCCc-EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch---------HHhccC
Confidence 468999999998752 5555566665445 99999999998888743 3432 2333221 122223
Q ss_pred -CccEEE-ecC-CcHHHHHHHHHHhccCCceEEEEc
Q 025257 140 -GVDYSF-ECI-GNVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 140 -~~d~v~-d~~-g~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
.+|.|+ +.. .+...++.+++.+++| |.+....
T Consensus 173 ~~~D~Ii~~~p~~~~~~l~~a~~~l~~g-G~lh~~~ 207 (260)
T d2frna1 173 NIADRILMGYVVRTHEFIPKALSIAKDG-AIIHYHN 207 (260)
T ss_dssp SCEEEEEECCCSSGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHhhcCCC-CEEEEEe
Confidence 689665 433 3344478899999996 8876554
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.80 E-value=0.023 Score=40.47 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=56.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.++.|+|.|.+|...+++++..|. +|+..++.....+.....+.... .++.+.+.+ .|+|..++.
T Consensus 46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~~-------~~l~~ll~~-----sD~v~l~~p 112 (191)
T d1gdha1 46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEASYQATFH-------DSLDSLLSV-----SQFFSLNAP 112 (191)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHHHHTCEEC-------SSHHHHHHH-----CSEEEECCC
T ss_pred cccceEEeecccchHHHHHHHHhhcc-ccccccccccccchhhccccccc-------CCHHHHHhh-----CCeEEecCC
Confidence 47899999999999999999999999 99999976554443333322111 334444432 577764432
Q ss_pred -cHHH----HHHHHHHhccCCceEEEEc
Q 025257 150 -NVSV----MRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 150 -~~~~----~~~~~~~l~~~~G~~v~~g 172 (255)
.+.+ -...++.|+++ ..+|-++
T Consensus 113 lt~~T~~li~~~~l~~mk~~-a~lIN~s 139 (191)
T d1gdha1 113 STPETRYFFNKATIKSLPQG-AIVVNTA 139 (191)
T ss_dssp CCTTTTTCBSHHHHTTSCTT-EEEEECS
T ss_pred CCchHhheecHHHhhCcCCc-cEEEecC
Confidence 2211 24666677775 6666554
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.79 E-value=0.04 Score=37.52 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=53.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
+|-|+|.|.+|...+.-+...|. .|++..+++++....+..+.... +.. . +.++ ..|+||-|+....
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~-~~~---~---e~~~-----~~diIi~~v~~~~ 68 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIERARTVGVT-ETS---E---EDVY-----SCPVVISAVTPGV 68 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHHHHHHTCE-ECC---H---HHHH-----TSSEEEECSCGGG
T ss_pred EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHhhhccccc-ccH---H---HHHh-----hcCeEEEEecCch
Confidence 57889999999999999999999 99988877766655544333211 111 1 1222 4677777777665
Q ss_pred HHHHHHHHhccCCceEEEEc
Q 025257 153 VMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 153 ~~~~~~~~l~~~~G~~v~~g 172 (255)
..+.+......-+..++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~id~s 88 (152)
T d1i36a2 69 ALGAARRAGRHVRGIYVDIN 88 (152)
T ss_dssp HHHHHHHHHTTCCSEEEECS
T ss_pred HHHHHHhhcccCCceeeccC
Confidence 34444333333213444443
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.75 E-value=0.0042 Score=46.05 Aligned_cols=37 Identities=30% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF 108 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~ 108 (255)
++++||+|+ +++|.+.++.+...|+ +|+.+++++++.
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~ 38 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREGE 38 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcccc
Confidence 467899997 8999999999999999 999999887643
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.74 E-value=0.0052 Score=46.83 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=30.8
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
+++|+|.|+|+.|++++..++..|. +|++++.++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence 5789999999999999999999999 999998653
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=95.74 E-value=0.021 Score=40.81 Aligned_cols=90 Identities=26% Similarity=0.248 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
-.|.+|.|.|.|.+|...+++++..|. +|++.++..... .....+.... .++.+.+.+ .|+|.-++
T Consensus 47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-~~~~~~~~~~-------~~l~~ll~~-----sD~i~~~~ 112 (193)
T d1mx3a1 47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV-------STLQDLLFH-----SDCVTLHC 112 (193)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC-------SSHHHHHHH-----CSEEEECC
T ss_pred eeCceEEEeccccccccceeeeecccc-ceeeccCccccc-chhhhccccc-------cchhhcccc-----CCEEEEee
Confidence 367899999999999999999999999 999999765432 2223333211 334433432 56665433
Q ss_pred C-cHHH----HHHHHHHhccCCceEEEEcc
Q 025257 149 G-NVSV----MRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g-~~~~----~~~~~~~l~~~~G~~v~~g~ 173 (255)
. .+.+ -...++.|+++ ..+|-++-
T Consensus 113 plt~~T~~li~~~~l~~mk~~-a~lIN~sR 141 (193)
T d1mx3a1 113 GLNEHNHHLINDFTVKQMRQG-AFLVNTAR 141 (193)
T ss_dssp CCCTTCTTSBSHHHHTTSCTT-EEEEECSC
T ss_pred cccccchhhhhHHHHhccCCC-CeEEecCC
Confidence 3 2211 23556677775 66665543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0099 Score=43.50 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=65.6
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~ 135 (255)
|....+..+.++||-+|.+. |..++++|+.+ +. +|+.++.+++..+.++ +.|....+.... .+..+.+.+
T Consensus 51 L~~L~~~~~~k~vLEiGt~~-GyStl~~a~al~~~g-~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~--Gda~e~l~~ 126 (219)
T d2avda1 51 LANLARLIQAKKALDLGTFT-GYSALALALALPADG-RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL--KPALETLDE 126 (219)
T ss_dssp HHHHHHHTTCCEEEEECCTT-SHHHHHHHTTSCTTC-EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE--SCHHHHHHH
T ss_pred HHHHHHccCCCeEEEEechh-hHHHHHHHHhCCCCc-eEEEEeechhHHHHHHHHHHhcCccceEEEEE--eehhhcchh
Confidence 33445556668999999753 77788888876 45 9999999998876664 345432222121 233333322
Q ss_pred ----hcCCCccEEEecCCc---HHHHHHHHHHhccCCceEEEE
Q 025257 136 ----LTDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 136 ----~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~ 171 (255)
...+.||.||--... ...++.+++.+++| |.++.=
T Consensus 127 ~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G-Gvii~D 168 (219)
T d2avda1 127 LLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVL 168 (219)
T ss_dssp HHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred hhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCC-cEEEEe
Confidence 223379999833332 23478999999996 776653
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.73 E-value=0.019 Score=40.83 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=57.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+.++.|.|.|.+|...++.++..|. +|+..++........++.+.... .++.+.+. ..|+|.-+..
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~~-------~~l~~~l~-----~sD~v~~~~p 109 (188)
T d2naca1 43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH-------ATREDMYP-----VCDVVTLNCP 109 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC-------SSHHHHGG-----GCSEEEECSC
T ss_pred cccceeeccccccchhhhhhhhccCc-eEEEEeecccccccccccccccc-------CCHHHHHH-----hccchhhccc
Confidence 57899999999999999999999999 99999987655555555443221 22333332 3566654333
Q ss_pred -cHH----HHHHHHHHhccCCceEEEEc
Q 025257 150 -NVS----VMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 150 -~~~----~~~~~~~~l~~~~G~~v~~g 172 (255)
.+. .-...+..|+++ ..+|-++
T Consensus 110 lt~~T~~li~~~~l~~mk~g-a~lIN~a 136 (188)
T d2naca1 110 LHPETEHMINDETLKLFKRG-AYIVNTA 136 (188)
T ss_dssp CCTTTTTCBSHHHHTTSCTT-EEEEECS
T ss_pred ccccchhhhHHHHHHhCCCC-CEEEecC
Confidence 221 124566677774 5665553
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.72 E-value=0.0028 Score=41.96 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
+++++++|.|+|.+|+-+++.++..|. +|..+.+++
T Consensus 30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~ 65 (122)
T d1xhca2 30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA 65 (122)
T ss_dssp HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence 345799999999999999999999999 999998764
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.015 Score=45.71 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=28.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
+.|||+|+ |-+|..++..+...|. +|+++++..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence 67899997 9999999999999999 999999854
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0096 Score=38.51 Aligned_cols=37 Identities=30% Similarity=0.472 Sum_probs=32.4
Q ss_pred CCC-CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 69 EPG-SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 69 ~~~-~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
.|+ .+|.|+|+|-+|.+.++-++.+|. ++++.+.+++
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~ 45 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD 45 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence 344 569999999999999999999999 9999997654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=95.62 E-value=0.047 Score=37.73 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=59.4
Q ss_pred EEEEEcCChHHHH-HHHHHHHc-CCCeEEEEcCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 73 IVAVFGLGTVGLA-VAEGAKAA-GASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 73 ~vlI~G~g~vG~~-a~~l~~~~-g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+|.|.|+|.+|.. ....++.. +. .+++.++++++.+.+ ++++...+++.- .+.+ + ..+|+|+-|+.
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~------~~ll-~---~~iD~V~I~tp 71 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTDY------RDVL-Q---YGVDAVMIHAA 71 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSST------TGGG-G---GCCSEEEECSC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhcccccccccH------HHhc-c---cccceeccccc
Confidence 6889999999864 55566555 55 777778887777666 557765444322 1112 1 25899999998
Q ss_pred cHHHHHHHHHHhccCCceEEEEcc
Q 025257 150 NVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 ~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.....+.+..++..+ +=+.+.-
T Consensus 72 ~~~H~~~~~~al~~g--k~V~~EK 93 (167)
T d1xeaa1 72 TDVHSTLAAFFLHLG--IPTFVDK 93 (167)
T ss_dssp GGGHHHHHHHHHHTT--CCEEEES
T ss_pred ccccccccccccccc--cccccCC
Confidence 887788899999984 4455543
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.60 E-value=0.012 Score=45.66 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=29.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
+++||+|+ |-+|..++..+...|. +|+++++.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~ 34 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR 34 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence 57999998 9999999999999999 99999974
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.59 E-value=0.015 Score=45.73 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=46.5
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcE-EeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.++.+|||+|+ |-+|..++..+...|. +|+++++.+............. ..|..+ .. .+.+.. .++|.|+.
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~D~~~----~~-~~~~~~-~~~d~Vih 85 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMTEDMFCDEFHLVDLRV----ME-NCLKVT-EGVDHVFN 85 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSCGGGTCSEEEECCTTS----HH-HHHHHH-TTCSEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccchhhhcccCcEEEeechh----HH-HHHHHh-hcCCeEee
Confidence 46789999997 9999999999999999 9999986544322111112222 223322 22 222222 26899998
Q ss_pred cCC
Q 025257 147 CIG 149 (255)
Q Consensus 147 ~~g 149 (255)
+++
T Consensus 86 ~a~ 88 (363)
T d2c5aa1 86 LAA 88 (363)
T ss_dssp CCC
T ss_pred ccc
Confidence 774
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.03 Score=43.50 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=45.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC----cchHHHH---HhcCCcEE-eCCCCCCchHHHHHHhhcCCCccE
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID----PKKFDRA---KNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~----~~~~~~~---~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~ 143 (255)
+|||+|+ |-+|..++..+...|. +|+++++. ....... ..-+...+ .|-.+ ...+.+.+++. ++|+
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~~---~~d~ 76 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-EALMTEILHDH---AIDT 76 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC-HHHHHHHHHHT---TCSE
T ss_pred EEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCC-HHHHHHHHhcc---CCCE
Confidence 6999998 9999999999999999 99999752 1222222 22234333 23222 12233333332 7999
Q ss_pred EEecCC
Q 025257 144 SFECIG 149 (255)
Q Consensus 144 v~d~~g 149 (255)
||++++
T Consensus 77 ViHlAa 82 (338)
T d1udca_ 77 VIHFAG 82 (338)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 999875
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.56 E-value=0.018 Score=37.82 Aligned_cols=70 Identities=26% Similarity=0.301 Sum_probs=47.3
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-Ccc
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVD 142 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d 142 (255)
+...-.++++|+|.|+|.+|+-+++.+..+|. +|.++.+.+.- ++ ..-+ ++..+.+.+.... +++
T Consensus 23 ~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~~~------l~-----~~~d--~~~~~~~~~~l~~~gv~ 88 (123)
T d1nhpa2 23 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDRP------LG-----VYLD--KEFTDVLTEEMEANNIT 88 (123)
T ss_dssp HHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSST------TT-----TTCC--HHHHHHHHHHHHTTTEE
T ss_pred HHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecCcc------cc-----cccc--hhhHHHHHHHhhcCCeE
Confidence 33444567899999999999999999999999 99999875321 11 0011 5555555554444 677
Q ss_pred EEEec
Q 025257 143 YSFEC 147 (255)
Q Consensus 143 ~v~d~ 147 (255)
+.+++
T Consensus 89 ~~~~~ 93 (123)
T d1nhpa2 89 IATGE 93 (123)
T ss_dssp EEESC
T ss_pred EEeCc
Confidence 77654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.55 E-value=0.12 Score=36.15 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=60.9
Q ss_pred EEEEEcCChHHHHHHHHHHHc-CCCeEEEE-cCCcchHHHH-HhcCCc---EEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 73 IVAVFGLGTVGLAVAEGAKAA-GASRVIGI-DIDPKKFDRA-KNFGVT---EFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~-~~~~~~~~~~-~~~g~~---~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
++.|.|+|.+|...++.++.. ++ +++++ ++++++.+.+ ++.+.. .++ .++.+.+.+ ..+|+|+-
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~ll~~---~~iD~v~I 72 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIH------GSYESLLED---PEIDALYV 72 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEE------SSHHHHHHC---TTCCEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeec------CcHHHhhhc---cccceeee
Confidence 578899999999888888776 56 77766 5566655444 555532 233 334444432 26999999
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
|+.....++.+..++..+ +=+.+..
T Consensus 73 ~tp~~~h~~~~~~~l~~g--~~v~~EK 97 (184)
T d1ydwa1 73 PLPTSLHVEWAIKAAEKG--KHILLEK 97 (184)
T ss_dssp CCCGGGHHHHHHHHHTTT--CEEEECS
T ss_pred cccchhhcchhhhhhhcc--ceeeccc
Confidence 998877788888999884 5455644
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.52 E-value=0.0084 Score=39.57 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=31.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
.++++|.|+|.+|+-+++.++.+|. +|.++.+++.
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~ 59 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE 59 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccc
Confidence 4789999999999999999999999 9999997643
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.51 E-value=0.015 Score=38.49 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
.++++|.|+|.+|+=+++.++.+|. +|..+.++
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~ 58 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMM 58 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEee
Confidence 4799999999999999999999999 99999875
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=95.51 E-value=0.02 Score=42.41 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=57.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-EEeCCCCCCchHHHHHHhhc-CCCcc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVDLT-DGGVD 142 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~i~~~~-~~~~d 142 (255)
.++++||-.|+|+ |..+..+++ .|. +|++++.|++-.+.+++ .|.. .++.. + +.++. .+.||
T Consensus 36 ~~~~~vLDiGCG~-G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~-----d----~~~~~~~~~fD 103 (246)
T d1y8ca_ 36 LVFDDYLDLACGT-GNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQ-----D----ISNLNINRKFD 103 (246)
T ss_dssp CCTTEEEEETCTT-STTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECC-----C----GGGCCCSCCEE
T ss_pred CCCCeEEEEeCcC-CHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCccceeecc-----c----hhhhccccccc
Confidence 3457899999874 766666665 588 99999999988777743 3322 22221 1 12222 23799
Q ss_pred EEEecCCc------H----HHHHHHHHHhccCCceEEE
Q 025257 143 YSFECIGN------V----SVMRAALECCHKGWGTSVI 170 (255)
Q Consensus 143 ~v~d~~g~------~----~~~~~~~~~l~~~~G~~v~ 170 (255)
+|+...+. + ..++.+.++|+++ |.++.
T Consensus 104 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~ 140 (246)
T d1y8ca_ 104 LITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFIF 140 (246)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE-EEEEE
T ss_pred ccceeeeeeeccCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence 99853221 1 1367788889997 98774
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0086 Score=39.63 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=30.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
++++|.|+|.+|+-+++.++.+|. +|..+.+++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence 689999999999999999999999 999999763
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.48 E-value=0.038 Score=43.00 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=44.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc----hH---HHHHhcCCcEEe-CCCCCCchHHHHHHhhcCCCcc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK----KF---DRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~----~~---~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~~~~~d 142 (255)
+.|||+|+ |-+|..++..+...|. +|+++++... .. +....-+.+.+. |-.+ .+.+.+.+... ++|
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~---~~d 76 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD-RKGLEKVFKEY---KID 76 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTC-HHHHHHHHHHS---CCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCC-HHHHHHHHhcc---CCC
Confidence 57899998 9999999988888999 9999864221 11 122223343332 3222 12222222221 799
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+|+.+++.
T Consensus 77 ~VihlAa~ 84 (347)
T d1z45a2 77 SVIHFAGL 84 (347)
T ss_dssp EEEECCSC
T ss_pred EEEEcccc
Confidence 99998764
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.44 E-value=0.015 Score=40.93 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=36.5
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 111 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~ 111 (255)
|.+...--++++|||+|+|+++.+++..+... .+|.++.|+.++.+.+
T Consensus 9 l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~--~~i~I~nR~~~ka~~l 56 (177)
T d1nvta1 9 LEEEIGRVKDKNIVIYGAGGAARAVAFELAKD--NNIIIANRTVEKAEAL 56 (177)
T ss_dssp HHHHHCCCCSCEEEEECCSHHHHHHHHHHTSS--SEEEEECSSHHHHHHH
T ss_pred HHHhCCCcCCCEEEEECCcHHHHHHHHHHccc--cceeeehhhhhHHHHH
Confidence 43433335789999999999999887666433 3899999998887766
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.40 E-value=0.092 Score=36.75 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=52.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhcCCc---------EEeCCCCCCchHHHHHHhhcCCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVT---------EFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~--~~~~~~~~g~~---------~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
+|.|+|+|..|.+.+..+...|. +|....+..+ ..+.+++..-. ..+... .++.+.+. +.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~-----~a 72 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP---EQLEKCLE-----NA 72 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECG---GGHHHHHT-----TC
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhcccccccc---ccHHHHHh-----cc
Confidence 58899999999999999888898 9999887433 23333322110 001111 33444443 58
Q ss_pred cEEEecCCcHHHHHHHHHHhcc
Q 025257 142 DYSFECIGNVSVMRAALECCHK 163 (255)
Q Consensus 142 d~v~d~~g~~~~~~~~~~~l~~ 163 (255)
|+|+.++.... ++..++.+.+
T Consensus 73 d~Ii~avps~~-~~~~~~~l~~ 93 (180)
T d1txga2 73 EVVLLGVSTDG-VLPVMSRILP 93 (180)
T ss_dssp SEEEECSCGGG-HHHHHHHHTT
T ss_pred chhhcccchhh-hHHHHHhhcc
Confidence 99999998776 6666665544
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.38 E-value=0.037 Score=41.94 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=30.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
-.+|||+|+ |-+|..++..+...|. +|++++|++.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~ 38 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV 38 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCc
Confidence 356999998 9999999998888998 9999998653
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=95.34 E-value=0.035 Score=42.80 Aligned_cols=95 Identities=22% Similarity=0.267 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc------CC-----cEEeCCCCCCchHHHHHHhhc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF------GV-----TEFVNPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~------g~-----~~vi~~~~~~~~~~~~i~~~~ 137 (255)
...++|||+|+|. |..+-++++.....+|.+++.+++-.+.+++. ++ -.++. .+..+.+++ +
T Consensus 76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~-----~Da~~~l~~-~ 148 (312)
T d1uira_ 76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI-----DDARAYLER-T 148 (312)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE-----SCHHHHHHH-C
T ss_pred CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE-----chHHHHhhh-c
Confidence 3447999998764 66677777776555999999999888877653 11 01221 334444544 3
Q ss_pred CCCccEEE-ecC---Cc---------HHHHHHHHHHhccCCceEEEE
Q 025257 138 DGGVDYSF-ECI---GN---------VSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 138 ~~~~d~v~-d~~---g~---------~~~~~~~~~~l~~~~G~~v~~ 171 (255)
++.+|+|+ |.. +. ..-++.+.+.|+++ |.++.-
T Consensus 149 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gvlv~~ 194 (312)
T d1uira_ 149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQ 194 (312)
T ss_dssp CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEE
T ss_pred CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC-ceEEEe
Confidence 34899997 542 21 12367888999997 988764
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=95.27 E-value=0.023 Score=42.96 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-----C-----cEEeCCCCCCchHHHHHHhhcC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG-----V-----TEFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-----~-----~~vi~~~~~~~~~~~~i~~~~~ 138 (255)
...++|||.|+|. |..+..++++.+..+|.+++.+++=.+.+++.- + -.++. .+-.+.+++ ++
T Consensus 74 ~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~-----~D~~~~l~~-~~ 146 (274)
T d1iy9a_ 74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV-----DDGFMHIAK-SE 146 (274)
T ss_dssp SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE-----SCSHHHHHT-CC
T ss_pred CCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEe-----chHHHHHhh-cC
Confidence 3457999998765 667777788777669999999998888876532 1 01222 222233443 23
Q ss_pred CCccEEE-ecCC---------cHHHHHHHHHHhccCCceEEEEc
Q 025257 139 GGVDYSF-ECIG---------NVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 139 ~~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
..+|+|+ |... ...-++.+.+.|+++ |.++.-.
T Consensus 147 ~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-Gv~v~q~ 189 (274)
T d1iy9a_ 147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT 189 (274)
T ss_dssp SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred CCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-ceEEEec
Confidence 3899997 5433 122378889999997 9888754
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0089 Score=35.85 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=31.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcch
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 107 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~ 107 (255)
++|.|+|+|-+|.+.++-++.+|. ++++.+.+++.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCCC
Confidence 478999999999999999999999 99999976543
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=95.23 E-value=0.0073 Score=41.39 Aligned_cols=85 Identities=9% Similarity=-0.078 Sum_probs=53.0
Q ss_pred EEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHHHH
Q 025257 75 AVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM 154 (255)
Q Consensus 75 lI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~ 154 (255)
-+.|+|.+|.+.++.++..+. .+.+..|++++.+.+.+.+.....+..+ .. ...|+||-|+.... +
T Consensus 3 gfIG~G~mg~~l~~~L~~~~~-~~~v~~R~~~~~~~l~~~~~~~~~~~~~-----------~~-~~~DiVil~v~d~~-i 68 (153)
T d2i76a2 3 NFVGTGTLTRFFLECLKDRYE-IGYILSRSIDRARNLAEVYGGKAATLEK-----------HP-ELNGVVFVIVPDRY-I 68 (153)
T ss_dssp EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCC-----------CC-C---CEEECSCTTT-H
T ss_pred EEEeCcHHHHHHHHHHHhCCC-EEEEEeCChhhhcchhhcccccccchhh-----------hh-ccCcEEEEeccchh-h
Confidence 367999999998887765443 4457889999998887765432222221 10 15899999998776 8
Q ss_pred HHHHHHhccCCceEEEEcc
Q 025257 155 RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 155 ~~~~~~l~~~~G~~v~~g~ 173 (255)
...+..++..+..++.+..
T Consensus 69 ~~v~~~l~~~~~ivi~~s~ 87 (153)
T d2i76a2 69 KTVANHLNLGDAVLVHCSG 87 (153)
T ss_dssp HHHHTTTCCSSCCEEECCS
T ss_pred hHHHhhhcccceeeeeccc
Confidence 8888888754144455533
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.22 E-value=0.053 Score=42.03 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=30.7
Q ss_pred CCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 025257 71 GSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 109 (255)
Q Consensus 71 ~~~vlI~G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~ 109 (255)
++..||+|+ .++|.+.++.+...|+ +|+.+.++.....
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~~~~~~ 42 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNI 42 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECGGGHHH
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCchhhhh
Confidence 467799994 3899999999999999 9999887665433
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.16 E-value=0.016 Score=42.67 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
+..++|+|.|+|+.|+.++..++..|. +|++++.+++
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence 466899999999999999999999999 9999987653
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.16 E-value=0.015 Score=41.12 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=34.2
Q ss_pred EEEEE-cCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 025257 73 IVAVF-GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 112 (255)
Q Consensus 73 ~vlI~-G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~ 112 (255)
+|.|+ |+|.+|.+.++.+...|+ +|++..|++++.+.+.
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l~ 41 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKA 41 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence 57888 559999999999999999 9999999998877663
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=95.14 E-value=0.014 Score=42.81 Aligned_cols=93 Identities=9% Similarity=0.060 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--EEeCCCCCCchHHHHHHhhc-CCCcc
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EFVNPKDHDKPIQQVLVDLT-DGGVD 142 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~i~~~~-~~~~d 142 (255)
.+..++.+||-.|+|. |..+..++ ..|. +|++++.+++..+.+++...+ .++... +.+.. ++.||
T Consensus 16 ~~~~~~~~VLDiGcG~-G~~~~~l~-~~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~---------~~~~~~~~~fD 83 (225)
T d2p7ia1 16 TPFFRPGNLLELGSFK-GDFTSRLQ-EHFN-DITCVEASEEAISHAQGRLKDGITYIHSR---------FEDAQLPRRYD 83 (225)
T ss_dssp GGGCCSSCEEEESCTT-SHHHHHHT-TTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESC---------GGGCCCSSCEE
T ss_pred hhhCCCCcEEEEeCCC-cHHHHHHH-HcCC-eEEEEeCcHHHhhhhhccccccccccccc---------ccccccccccc
Confidence 3445677899999875 66666655 4688 999999999999998764322 122211 11112 23799
Q ss_pred EEEecC-----CcH-HHHHHHH-HHhccCCceEEEE
Q 025257 143 YSFECI-----GNV-SVMRAAL-ECCHKGWGTSVIV 171 (255)
Q Consensus 143 ~v~d~~-----g~~-~~~~~~~-~~l~~~~G~~v~~ 171 (255)
+|+-.- ..+ ..+..+. ++|+++ |.++..
T Consensus 84 ~I~~~~vleh~~d~~~~l~~i~~~~Lk~g-G~l~i~ 118 (225)
T d2p7ia1 84 NIVLTHVLEHIDDPVALLKRINDDWLAEG-GRLFLV 118 (225)
T ss_dssp EEEEESCGGGCSSHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred cccccceeEecCCHHHHHHHHHHHhcCCC-ceEEEE
Confidence 997321 122 2255665 678996 877654
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=95.13 E-value=0.017 Score=43.73 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=29.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-cchHHHH
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFDRA 111 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~-~~~~~~~ 111 (255)
.+||+|+ +++|.+.++.+...|+ +|++.+++ +++.+.+
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~ 43 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL 43 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHHH
Confidence 4688887 8999999999999999 99887654 3444333
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.13 E-value=0.054 Score=35.74 Aligned_cols=72 Identities=13% Similarity=0.227 Sum_probs=47.8
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
+|.|.|+ |-+|++..+++...|. +++....... . ..+ ..+|+++|.+..+
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~~----------~---------~~~---------~~~DVvIDFS~p~ 52 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVNG----------V---------EEL---------DSPDVVIDFSSPE 52 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETTE----------E---------EEC---------SCCSEEEECSCGG
T ss_pred EEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCCc----------H---------HHh---------ccCCEEEEecCHH
Confidence 5889997 9999999999999998 6665431100 0 000 1478888888776
Q ss_pred HHHHHHHHHhccCCceEEEEccCC
Q 025257 152 SVMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 152 ~~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
. ....++.+... +.-+.+|.++
T Consensus 53 ~-~~~~l~~~~~~-~~p~ViGTTG 74 (128)
T d1vm6a3 53 A-LPKTVDLCKKY-RAGLVLGTTA 74 (128)
T ss_dssp G-HHHHHHHHHHH-TCEEEECCCS
T ss_pred H-HHHHHHHHHhc-CCCEEEEcCC
Confidence 6 55555555553 5666677754
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=95.12 E-value=0.018 Score=43.22 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=28.5
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
+|||+|+ |-+|..++..++..|. +|++++++
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~ 34 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQ 34 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEeech
Confidence 6999998 9999999999999999 99999875
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.12 E-value=0.22 Score=34.73 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=58.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcC-CCeEEEEcC-Ccc-hHHHHHhcCCcEEeCCCC----------CCchHHHHHHhhcCC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDI-DPK-KFDRAKNFGVTEFVNPKD----------HDKPIQQVLVDLTDG 139 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~-~~~-~~~~~~~~g~~~vi~~~~----------~~~~~~~~i~~~~~~ 139 (255)
+|.|.|.|-+|..+++.+.... . +++++.. ++. ....+...+......... ...++.+...
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~----- 76 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK----- 76 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH-----
T ss_pred EEEEECCCHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhh-----
Confidence 5889999999999999988664 5 7777743 333 233333344322221111 0011111111
Q ss_pred CccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 140 GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 140 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++|+|+||+|.-...+.+-.+++.+ -+++..+..
T Consensus 77 ~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~~ 110 (178)
T d1b7go1 77 TSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGGE 110 (178)
T ss_dssp HCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTS
T ss_pred cCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECCC
Confidence 4899999999876677777888875 677776553
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.09 E-value=0.061 Score=37.94 Aligned_cols=88 Identities=24% Similarity=0.260 Sum_probs=58.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+.++.|.|.|.+|...+++++..|. +|++.++...+.+. .+.+... .++.+.+. ..|+|.-++.
T Consensus 43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~-~~~~~~~--------~~l~ell~-----~sDiv~~~~P 107 (184)
T d1ygya1 43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARA-AQLGIEL--------LSLDDLLA-----RADFISVHLP 107 (184)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHH-HHHTCEE--------CCHHHHHH-----HCSEEEECCC
T ss_pred cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHH-hhcCcee--------ccHHHHHh-----hCCEEEEcCC
Confidence 56899999999999999999999999 99999976554333 3333321 23433343 2677765443
Q ss_pred -cHHH----HHHHHHHhccCCceEEEEcc
Q 025257 150 -NVSV----MRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 -~~~~----~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.+ -...++.|+++ ..+|-++-
T Consensus 108 lt~~T~~lin~~~l~~mk~~-a~lIN~sR 135 (184)
T d1ygya1 108 KTPETAGLIDKEALAKTKPG-VIIVNAAR 135 (184)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred CCchhhhhhhHHHHhhhCCC-ceEEEecc
Confidence 2221 24667777775 67666644
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.07 E-value=0.22 Score=34.45 Aligned_cols=99 Identities=23% Similarity=0.284 Sum_probs=60.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcC-CCeEEEEcC-Cc-chHHHHHhcCCcEEeCCCCCCchHHH-------HHHhhcCCCcc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDI-DP-KKFDRAKNFGVTEFVNPKDHDKPIQQ-------VLVDLTDGGVD 142 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~-~~-~~~~~~~~~g~~~vi~~~~~~~~~~~-------~i~~~~~~~~d 142 (255)
+|.|.|-|-+|..+.+.+...+ . +++++.. ++ .....+...+.+......+....+.+ ...+.. .++|
T Consensus 3 ~VgINGfGRIGR~v~R~l~~~~di-~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~-~~vD 80 (171)
T d1cf2o1 3 AVAINGYGTVGKRVADAIAQQDDM-KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-DEAD 80 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHTSSSE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-HTCS
T ss_pred EEEEEcCcHHHHHHHHHHHhCCCc-eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhh-cCCC
Confidence 6889999999999999887665 4 6666643 22 33344555555433322210000100 001111 1699
Q ss_pred EEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 143 YSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 143 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+|+||+|.-...+.+-..+..+ -+++..+..
T Consensus 81 vViEcTG~f~~~~~~~~hl~~G-~K~vi~~~~ 111 (171)
T d1cf2o1 81 IVIDCTPEGIGAKNLKMYKEKG-IKAIFQGGE 111 (171)
T ss_dssp EEEECCSTTHHHHHHHHHHHTT-CEEEECTTS
T ss_pred EEEEccCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence 9999999876677888889886 788777553
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.07 E-value=0.018 Score=42.56 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
...+|+|.|+|..|++++..++..|. +|.++++.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGY-SVHILARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence 44689999999999999999999999 99999864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.035 Score=42.20 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC---------Cc-EEeCCCCCCchHHHHHHhhcC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG---------VT-EFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g---------~~-~vi~~~~~~~~~~~~i~~~~~ 138 (255)
...++|||+|+|. |..+-.+++..+..+|++++.+++-.+.+++.- .. .++. .+-.+.+++ +.
T Consensus 77 ~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~-----~Da~~~l~~-~~ 149 (285)
T d2o07a1 77 PNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV-----GDGFEFMKQ-NQ 149 (285)
T ss_dssp SSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----SCHHHHHHT-CS
T ss_pred cCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE-----ccHHHHHhc-CC
Confidence 3447999998764 566777788777669999999998888886532 11 1221 233334443 33
Q ss_pred CCccEEE-ecCCc---------HHHHHHHHHHhccCCceEEEEc
Q 025257 139 GGVDYSF-ECIGN---------VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 139 ~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+.+|+|+ |.... ..-++.+-+.|+++ |.++.-.
T Consensus 150 ~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~ 192 (285)
T d2o07a1 150 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG 192 (285)
T ss_dssp SCEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred CCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC-CeEEEec
Confidence 3899998 54431 11267788899997 9887654
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.03 E-value=0.0037 Score=48.63 Aligned_cols=93 Identities=27% Similarity=0.310 Sum_probs=53.4
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCC-c--EEeCCCCCCchHHHHHHhhcC
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGV-T--EFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~-~--~vi~~~~~~~~~~~~i~~~~~ 138 (255)
..+.+|++||-.|+|. |..++.+++ .|+.+|++++.++. ...+ +..+. + .++.... .++ ....
T Consensus 29 ~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~--~~~-----~~~~ 98 (316)
T d1oria_ 29 RHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKV--EEV-----ELPV 98 (316)
T ss_dssp HHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCT--TTC-----CCSS
T ss_pred cccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccH--HHc-----cccc
Confidence 3456899999999874 666665555 78768999998764 3332 23332 1 1222111 111 1111
Q ss_pred CCccEEEe-cCCc--------HHHHHHHHHHhccCCceEE
Q 025257 139 GGVDYSFE-CIGN--------VSVMRAALECCHKGWGTSV 169 (255)
Q Consensus 139 ~~~d~v~d-~~g~--------~~~~~~~~~~l~~~~G~~v 169 (255)
+.+|+|+. ..+. +..+...-+.|+++ |+++
T Consensus 99 ~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~-G~ii 137 (316)
T d1oria_ 99 EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-GLIF 137 (316)
T ss_dssp SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred ceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC-eEEE
Confidence 27999973 3321 22345556789997 8775
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.03 E-value=0.014 Score=43.45 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=29.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
+.|||+|+ +++|.+.++.+...|+ +|+.++++++
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~ 36 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA 36 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence 46799997 8999999999999999 9999997653
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.0034 Score=48.66 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=28.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 103 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~ 103 (255)
++|||+|+ |-+|..++..+...|. +|+++++
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence 58999998 9999999988888999 9999975
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.00 E-value=0.016 Score=44.63 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
....++|+|+|+|..|+.++..++..|. +|++++.++
T Consensus 27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~ 63 (370)
T d2iida1 27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE 63 (370)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 3444689999999999999999999999 999998654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.97 E-value=0.028 Score=37.44 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=34.3
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
..++++++|+|.|+|.+|+-++..++..|. +|.++.+.+
T Consensus 30 ~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~ 68 (133)
T d1q1ra2 30 RQLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA 68 (133)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred HhhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence 345677899999999999999999999999 999999764
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.95 E-value=0.012 Score=44.76 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=29.7
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
.|+|.|+|+.|++++..++..|. +|+++++++
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT 35 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 58999999999999999999999 999999865
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.12 Score=33.89 Aligned_cols=88 Identities=16% Similarity=0.292 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCh-----------HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEe-CCCCCCchHHHHHHhhc
Q 025257 70 PGSIVAVFGLGT-----------VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 70 ~~~~vlI~G~g~-----------vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~i~~~~ 137 (255)
.-++|||+|+|+ .+-.++..++..|+ +++.+..+++...--.+. +++++ .+-. .+....+.+.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~-aD~lYfePlt--~e~v~~Ii~~- 80 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEM-ADATYIEPIH--WEVVRKIIEK- 80 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGG-SSEEECSCCC--HHHHHHHHHH-
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhh-cceeeeecCC--HHHHHHHHHH-
Confidence 347899999863 24556677778899 999999888775332222 34443 3333 3343343332
Q ss_pred CCCccEEEecCCcHHHHHHHHHHhcc
Q 025257 138 DGGVDYSFECIGNVSVMRAALECCHK 163 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~~~~~~~~~l~~ 163 (255)
+..|.|+-..|+...++...++.+.
T Consensus 81 -E~pd~il~~~GGQtalnla~~L~~~ 105 (127)
T d1a9xa3 81 -ERPDAVLPTMGGQTALNCALELERQ 105 (127)
T ss_dssp -HCCSEEECSSSHHHHHHHHHHHHHT
T ss_pred -hCcCCeEEEeeeehHhHHHHHHHHc
Confidence 2689999999999878777777655
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=94.95 E-value=0.057 Score=40.56 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=30.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcch
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 107 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~ 107 (255)
++|||+|+ |-+|..++..+...|. +|++++|++..
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~~ 39 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTA 39 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCT
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCcc
Confidence 68999998 9999999999989999 99999986543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=94.94 E-value=0.16 Score=35.08 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=55.1
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCC-cEEeCCCCCCchHHHHHHhhcCCCc
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV-TEFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~-~~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
.+.+|.+||=.++|. |..++. |...|+ +|+.++.+++..+.++ ..|. ..+..... ..+.... ...+..|
T Consensus 38 ~~~~g~~vLDl~~G~-G~~~i~-a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~--d~~~~~~-~~~~~~f 111 (171)
T d1ws6a1 38 RYPRRGRFLDPFAGS-GAVGLE-AASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV--EVFLPEA-KAQGERF 111 (171)
T ss_dssp HCTTCCEEEEETCSS-CHHHHH-HHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH--HHHHHHH-HHTTCCE
T ss_pred cccCCCeEEEecccc-chhhhh-hhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeeh--hcccccc-cccCCcc
Confidence 467888999887532 223333 334799 9999999998887774 3454 34544332 2222222 2222379
Q ss_pred cEEE-ecC---CcHHHHHHHHH--HhccCCceEEE
Q 025257 142 DYSF-ECI---GNVSVMRAALE--CCHKGWGTSVI 170 (255)
Q Consensus 142 d~v~-d~~---g~~~~~~~~~~--~l~~~~G~~v~ 170 (255)
|+|| |.. +-...+...+. +++++ |.++.
T Consensus 112 D~If~DPPY~~~~~~~l~~l~~~~ll~~~-g~ivi 145 (171)
T d1ws6a1 112 TVAFMAPPYAMDLAALFGELLASGLVEAG-GLYVL 145 (171)
T ss_dssp EEEEECCCTTSCTTHHHHHHHHHTCEEEE-EEEEE
T ss_pred ceeEEccccccCHHHHHHHHHHcCCcCCC-eEEEE
Confidence 9998 431 22222444433 47775 76654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.94 E-value=0.069 Score=40.96 Aligned_cols=101 Identities=18% Similarity=0.081 Sum_probs=62.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--EEeCCCCC---CchHHHHHHhhcCCCccEE
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EFVNPKDH---DKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~---~~~~~~~i~~~~~~~~d~v 144 (255)
..++|||+|+|. |..+-.++++....+|.+++.+++-.+.+++.-.. ..++.... ..+-.+.+++ +.+.||+|
T Consensus 106 ~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~yDvI 183 (312)
T d2b2ca1 106 DPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDVI 183 (312)
T ss_dssp SCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEEE
T ss_pred CCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCCCCEE
Confidence 447899998764 55666778877766999999999988888764211 01111000 0233344544 33489999
Q ss_pred E-ecCCc---------HHHHHHHHHHhccCCceEEEEcc
Q 025257 145 F-ECIGN---------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 145 ~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+ |.... ..-++.+.++|+++ |.++.-+.
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~-Gi~v~q~~ 221 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQGE 221 (312)
T ss_dssp EECCC-------------HHHHHHHHEEEE-EEEEEECC
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCCC-cEEEEecC
Confidence 8 43321 11167778899997 98887643
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.3 Score=32.81 Aligned_cols=93 Identities=12% Similarity=0.005 Sum_probs=58.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHH----HHHhcCCcEEeC-CCCCCchHHHHHHhhcCCCccEEEe
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD----RAKNFGVTEFVN-PKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~----~~~~~g~~~vi~-~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
+.++|.|.|.+|..+++.+...|. ++++++.++++.. .....|...+.- ..+ ++ .+++..-..+|.++-
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d--~~---~L~~a~i~~a~~vi~ 77 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIPGDSND--SS---VLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEESCTTS--HH---HHHHHTTTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcEEEEccCcc--hH---HHHHhccccCCEEEE
Confidence 579999999999999999999999 9999998775432 223346654442 222 22 333332226899998
Q ss_pred cCCcHHH---HHHHHHHhccCCceEEEE
Q 025257 147 CIGNVSV---MRAALECCHKGWGTSVIV 171 (255)
Q Consensus 147 ~~g~~~~---~~~~~~~l~~~~G~~v~~ 171 (255)
+++.... .-...+.+.+. -+++.-
T Consensus 78 ~~~~d~~n~~~~~~~r~~~~~-~~iia~ 104 (153)
T d1id1a_ 78 LSDNDADNAFVVLSAKDMSSD-VKTVLA 104 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred ccccHHHHHHHHHHHHHhCCC-CceEEE
Confidence 8876542 22233344453 455544
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=94.89 E-value=0.024 Score=43.33 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=61.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC---------c-EEeCCCCCCchHHHHHHhhcCCC
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV---------T-EFVNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~---------~-~vi~~~~~~~~~~~~i~~~~~~~ 140 (255)
-++|||+|+|. |..+-.++++.+..+|++++.+++-.+.+++.-. . .++. .+-.+.+++ +++.
T Consensus 90 pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~-----~Da~~~l~~-~~~~ 162 (295)
T d1inla_ 90 PKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI-----ANGAEYVRK-FKNE 162 (295)
T ss_dssp CCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----SCHHHHGGG-CSSC
T ss_pred CceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh-----hhHHHHHhc-CCCC
Confidence 47999998764 5566677777766589999999988888766321 0 1221 233344443 2337
Q ss_pred ccEEE-ecCCc----------HHHHHHHHHHhccCCceEEEEcc
Q 025257 141 VDYSF-ECIGN----------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 141 ~d~v~-d~~g~----------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
||+|+ |+... ..-++.+.+.|+++ |.++.-..
T Consensus 163 yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~-Gi~v~q~~ 205 (295)
T d1inla_ 163 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAETE 205 (295)
T ss_dssp EEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred CCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC-cEEEEecC
Confidence 99998 54331 12377888899997 98877543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.87 E-value=0.016 Score=41.18 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=34.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 111 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~ 111 (255)
++|.|.|+|.+|...+.++...|. +|+..+++++..+.+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~ 43 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG 43 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence 579999999999999988889999 999999998876655
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.87 E-value=0.012 Score=44.13 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=33.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHH-HH--HcCCCeEEEEcCCcchHHHH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEG-AK--AAGASRVIGIDIDPKKFDRA 111 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l-~~--~~g~~~v~~~~~~~~~~~~~ 111 (255)
.|+.++|+|+ +++|.+.++. ++ ..|+ +|+.+++++++.+.+
T Consensus 5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~ 49 (259)
T d1oaaa_ 5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL 49 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHH
Confidence 4677888897 8999987765 44 3689 999999999887766
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=94.86 E-value=0.14 Score=36.61 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=62.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHH----HhcCCcEE--eCCCCCCchHHHHHHhhcCCCccE
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRA----KNFGVTEF--VNPKDHDKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~----~~~g~~~v--i~~~~~~~~~~~~i~~~~~~~~d~ 143 (255)
+..||-+|+|. |..++.+|+.. +. .+++++.++.....+ ++.|.+.+ +.-.. ..+. ..+..+.+|.
T Consensus 30 ~PlvLeIGcG~-G~~~~~lA~~~p~~-~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da--~~l~---~~~~~~~~d~ 102 (204)
T d2fcaa1 30 NPIHIEVGTGK-GQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA--DTLT---DVFEPGEVKR 102 (204)
T ss_dssp CCEEEEECCTT-SHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG--GGHH---HHCCTTSCCE
T ss_pred CceEEEEEecC-cHHHHHHHHhCCCC-cEEEeecchHHHHHHHHHHHHHhccCchhcccch--hhhh---cccCchhhhc
Confidence 34677779875 88899999987 45 999999998877665 45565543 32221 2232 2222336887
Q ss_pred EEecCCc--------------HHHHHHHHHHhccCCceEEEEc
Q 025257 144 SFECIGN--------------VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 144 v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g 172 (255)
|+-.... +..++.+.+.|++| |.+....
T Consensus 103 v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg-G~l~i~T 144 (204)
T d2fcaa1 103 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG-GSIHFKT 144 (204)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS-CEEEEEE
T ss_pred cccccccccchhhhcchhhhHHHHHHHHHHhCCCC-cEEEEEE
Confidence 7643332 23488999999997 9987763
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.77 E-value=0.088 Score=35.74 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=42.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc---EEeCCCCCCchHHHHHHhhcCCCc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT---EFVNPKDHDKPIQQVLVDLTDGGV 141 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~vi~~~~~~~~~~~~i~~~~~~~~ 141 (255)
-+|.+||=.++|. |...+.. ..+|+.+|+.++.+++..+.++ ..+.. .++. .+..+.+.. ..+.|
T Consensus 13 ~~g~~vlDl~~Gt-G~~~iea-~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~-----~D~~~~l~~-~~~~f 84 (152)
T d2esra1 13 FNGGRVLDLFAGS-GGLAIEA-VSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK-----MEAERAIDC-LTGRF 84 (152)
T ss_dssp CCSCEEEEETCTT-CHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC-----SCHHHHHHH-BCSCE
T ss_pred CCCCeEEEcCCcc-CHHHHHH-HHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc-----ccccccccc-ccccc
Confidence 3688999887532 3333333 3478879999999988776664 34542 2333 333333433 23389
Q ss_pred cEEE
Q 025257 142 DYSF 145 (255)
Q Consensus 142 d~v~ 145 (255)
|+||
T Consensus 85 DiIf 88 (152)
T d2esra1 85 DLVF 88 (152)
T ss_dssp EEEE
T ss_pred ceeE
Confidence 9998
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.71 E-value=0.02 Score=42.87 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=29.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
.|+|.|+|+.|++++.+++..|..+|.+++++++
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 5899999999999999999999647888887643
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Probab=94.70 E-value=0.3 Score=36.75 Aligned_cols=109 Identities=16% Similarity=0.169 Sum_probs=67.7
Q ss_pred HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhcCCcEEeCCCC---------------
Q 025257 63 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRAKNFGVTEFVNPKD--------------- 124 (255)
Q Consensus 63 ~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~---~~~~~~~~~~~g~~~vi~~~~--------------- 124 (255)
.+...+.++..|+...+|..|++++..++.+|. +++++.. ++.+.+.++.+|++.++...+
T Consensus 52 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~-~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~ 130 (292)
T d2bhsa1 52 EKRGEIKPGDVLIEATSGNTGIALAMIAALKGY-RMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMAN 130 (292)
T ss_dssp HHTTSCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHH
T ss_pred HHhCCcCCCceeeeecccchhHHHHHHHHhcCc-ceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccc
Confidence 355666777776666779999999999999998 6665543 556778889999875432221
Q ss_pred -----------CCch-------HHHHHHhhcCCCccEEEecCCcHHHHHHHH---HHhccCCceEEEEcc
Q 025257 125 -----------HDKP-------IQQVLVDLTDGGVDYSFECIGNVSVMRAAL---ECCHKGWGTSVIVGV 173 (255)
Q Consensus 125 -----------~~~~-------~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~---~~l~~~~G~~v~~g~ 173 (255)
++.+ ...++.+-.++.+|.++-++|+.-.+.-.. +...+. .+++.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~-~~i~~Vep 199 (292)
T d2bhsa1 131 RGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKP-VTIVGLQP 199 (292)
T ss_dssp HTSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSC-CEEEEEEE
T ss_pred cccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCc-ceEEEecc
Confidence 0111 112333333346899998888654344444 444554 66666543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.65 E-value=0.055 Score=40.88 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-C-------------c--EEeCCCCCCchHHHH
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG-V-------------T--EFVNPKDHDKPIQQV 132 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-~-------------~--~vi~~~~~~~~~~~~ 132 (255)
.+.++|||+|+|. |..+-.++++ +..+|++++.+++=.+.+++.- . + .++. .+-.+-
T Consensus 71 ~~p~~vLiiG~G~-G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~-----~Da~~~ 143 (276)
T d1mjfa_ 71 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-----GDGFEF 143 (276)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-----SCHHHH
T ss_pred CCCceEEEecCCc-hHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE-----ChHHHH
Confidence 4457999998764 4455555664 4448999999988888876532 1 0 2222 223333
Q ss_pred HHhhcCCCccEEE-ecCCc---------HHHHHHHHHHhccCCceEEEEc
Q 025257 133 LVDLTDGGVDYSF-ECIGN---------VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 133 i~~~~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+++ .+.+|+|+ |+... ..-++.+.+.|+++ |.++.-+
T Consensus 144 l~~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~-Gv~v~q~ 190 (276)
T d1mjfa_ 144 IKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA 190 (276)
T ss_dssp HHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred Hhc--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC-ceEEEec
Confidence 433 23799997 55542 12278888999997 9887654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.62 E-value=0.026 Score=36.50 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
++++|.|+|.+|+-+++.++.+|. +|..+.+.+
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE 54 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence 789999999999999999999999 999998753
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.054 Score=41.92 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=46.5
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc-CCcEEe-CCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~-g~~~vi-~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+|||+|+ |-+|..+++.+...|..+|+++++...+...+.+. .+..+. |-.+ ..++.+...+ ++|.|+.+++
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~-~~~~~~~~~~----~~d~Vih~a~ 76 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI-HSEWIEYHVK----KCDVVLPLVA 76 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTT-CSHHHHHHHH----HCSEEEECBC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCC-hHHHHHHHHh----CCCccccccc
Confidence 6999998 99999999888788833899998766554444332 223222 2121 1344443322 5899999877
Q ss_pred c
Q 025257 150 N 150 (255)
Q Consensus 150 ~ 150 (255)
.
T Consensus 77 ~ 77 (342)
T d2blla1 77 I 77 (342)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=94.59 E-value=0.058 Score=40.77 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=63.8
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----cCCcEEeCCCCCCchHHHHHHhhc-C
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT-D 138 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~i~~~~-~ 138 (255)
.++.+..+||-.|+|. |..+..+++.. +. +|++++.+++..+.+++ .+...-+... +. .+.. .
T Consensus 23 ~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~----d~----~~~~~~ 92 (281)
T d2gh1a1 23 WKITKPVHIVDYGCGY-GYLGLVLMPLLPEGS-KYTGIDSGETLLAEARELFRLLPYDSEFLEG----DA----TEIELN 92 (281)
T ss_dssp SCCCSCCEEEEETCTT-THHHHHHTTTSCTTC-EEEEEECCHHHHHHHHHHHHSSSSEEEEEES----CT----TTCCCS
T ss_pred hccCCcCEEEEecCcC-CHHHHHHHHhCCCCC-EEEEEecchhHhhhhhccccccccccccccc----cc----cccccc
Confidence 3677788999999874 88888888865 45 89999999987777753 3432111111 11 1111 2
Q ss_pred CCccEEEecCC------cHHHHHHHHHHhccCCceEEEEc
Q 025257 139 GGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 139 ~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+.||+|+.... ....++.+.+.|+++ |+++...
T Consensus 93 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~lii~~ 131 (281)
T d2gh1a1 93 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKG-GKIICFE 131 (281)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred CCceEEEEehhhhcCCCHHHHHHHHHHHcCcC-cEEEEEE
Confidence 37999985322 233578999999997 9988764
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=94.58 E-value=0.073 Score=41.02 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCC--c--EEeCCCCCCchHHHHHHh
Q 025257 66 AKVEPGSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGV--T--EFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 66 ~~~~~~~~vlI~G~--g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~--~--~vi~~~~~~~~~~~~i~~ 135 (255)
..+.+|++||=..+ |+.++ . |...|+..|+.++.++...+.+++ .|. . .++. .+.-+.+++
T Consensus 140 ~~~~~g~~VLdlf~~~G~~sl---~-aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~-----~d~~~~l~~ 210 (317)
T d2b78a2 140 NGSAAGKTVLNLFSYTAAFSV---A-AAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV-----MDVFDYFKY 210 (317)
T ss_dssp HTTTBTCEEEEETCTTTHHHH---H-HHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE-----SCHHHHHHH
T ss_pred HHhhCCCceeecCCCCcHHHH---H-HHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE-----ccHHHHHHH
Confidence 45778999998865 44433 2 334687689999999988888753 222 1 2232 223333333
Q ss_pred hc-CC-CccEEE-ecCCc--------------HHHHHHHHHHhccCCceEEEEcc
Q 025257 136 LT-DG-GVDYSF-ECIGN--------------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~-~~-~~d~v~-d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.. .+ .||+|+ |...- ...+..++++++++ |.++.+..
T Consensus 211 ~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~sc 264 (317)
T d2b78a2 211 ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTN 264 (317)
T ss_dssp HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred HHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 21 23 799998 53311 12366788899997 98887654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.55 E-value=0.021 Score=44.15 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=31.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
+.++|+|.|||..|+.++..+...|. +|++++.++
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~ 35 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD 35 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence 35789999999999999999998899 999998754
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=94.52 E-value=0.32 Score=33.75 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=77.2
Q ss_pred EEEEEcCChHHHH-HHHHHHHcCCC-eEEEE-cCCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 73 IVAVFGLGTVGLA-VAEGAKAAGAS-RVIGI-DIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 73 ~vlI~G~g~vG~~-a~~l~~~~g~~-~v~~~-~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
+|.|.|+|.+|.. .+..++..+-. +++++ ++++++.+.+ ++++...++ .++.+.+.+ ..+|+|+-|+
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~------~~~~ell~~---~~id~v~I~t 75 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF------DSYEELLES---GLVDAVDLTL 75 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE------SCHHHHHHS---SCCSEEEECC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee------eeeeccccc---cccceeeccc
Confidence 6889999999865 46666655421 66755 5556665554 567766555 334444442 2699999888
Q ss_pred CcHHHHHHHHHHhccCCceEEEEccCCCCCcccc-Cchhhcc--CcEE-EEeeeCCCCccCcHHHHHHHHHcCCCC
Q 025257 149 GNVSVMRAALECCHKGWGTSVIVGVAASGQEIST-RPFQLVT--GRVW-KGTAFGGFKSRSQVPWLVDKYMKKEIK 220 (255)
Q Consensus 149 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~~~~~~~--~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (255)
......+.+..++.. |+=+.+..+.....-.. ....+.+ +..+ .++..........+.++.+++++|++.
T Consensus 76 p~~~h~~~~~~al~~--gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~ig 149 (181)
T d1zh8a1 76 PVELNLPFIEKALRK--GVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKPN 149 (181)
T ss_dssp CGGGHHHHHHHHHHT--TCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccccccccccccc--chhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCCc
Confidence 877768888888888 45555544221111000 0111222 3322 222211111123567888889998853
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.0074 Score=44.18 Aligned_cols=98 Identities=19% Similarity=0.070 Sum_probs=63.2
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhc----CCcEEeCCCCCCchHHHHHHhhc--CC
Q 025257 66 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTEFVNPKDHDKPIQQVLVDLT--DG 139 (255)
Q Consensus 66 ~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~i~~~~--~~ 139 (255)
....++.+||-.|+|. |..+..+++..+. +|++++.+++-.+.+++. +...+ .... .+ +.++. .+
T Consensus 56 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~-~f~~--~d----~~~~~~~~~ 126 (222)
T d2ex4a1 56 PNKTGTSCALDCGAGI-GRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVR-NYFC--CG----LQDFTPEPD 126 (222)
T ss_dssp --CCCCSEEEEETCTT-THHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEE-EEEE--CC----GGGCCCCSS
T ss_pred cCCCCCCEEEEeccCC-CHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccc-cccc--cc----ccccccccc
Confidence 3456788999999875 7777787776666 999999999988888653 22221 1110 11 11111 23
Q ss_pred CccEEEecC-----CcH---HHHHHHHHHhccCCceEEEEcc
Q 025257 140 GVDYSFECI-----GNV---SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 140 ~~d~v~d~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.||+|+... ..+ ..+..+.+.|+++ |.++....
T Consensus 127 ~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~-G~~~i~~~ 167 (222)
T d2ex4a1 127 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKDN 167 (222)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cccccccccccccchhhhhhhHHHHHHHhcCCc-ceEEEEEc
Confidence 799998532 222 2477888899997 99887744
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.46 E-value=0.018 Score=39.23 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=30.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 103 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~ 103 (255)
.|.+|||.|+|.+|..-+..+...|+ +|++++.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57899999999999999999999999 9999864
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.45 E-value=0.016 Score=45.18 Aligned_cols=95 Identities=24% Similarity=0.293 Sum_probs=52.8
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCc---EEeCCCCCCchHHHHHHhh
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVT---EFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~---~vi~~~~~~~~~~~~i~~~ 136 (255)
+.....+|++||-.|+|. |..+..+ ...|+.+|++++.++ ..+.+ ++.+.. .++.-.- .++ ..
T Consensus 32 ~~~~~~~~~~VLDlGcGt-G~ls~~a-a~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~--~~l-----~~ 101 (328)
T d1g6q1_ 32 QNKDLFKDKIVLDVGCGT-GILSMFA-AKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL--EDV-----HL 101 (328)
T ss_dssp HHHHHHTTCEEEEETCTT-SHHHHHH-HHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT--TTS-----CC
T ss_pred hccccCCcCEEEEeCCCC-CHHHHHH-HHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh--hhc-----cC
Confidence 334456899999999874 6665544 447877899999775 33333 334421 1222111 111 11
Q ss_pred cCCCccEEEe-cCC----c----HHHHHHHHHHhccCCceEE
Q 025257 137 TDGGVDYSFE-CIG----N----VSVMRAALECCHKGWGTSV 169 (255)
Q Consensus 137 ~~~~~d~v~d-~~g----~----~~~~~~~~~~l~~~~G~~v 169 (255)
..+.+|+|+. ..+ . +..+...-+.|+++ |+++
T Consensus 102 ~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg-G~ii 142 (328)
T d1g6q1_ 102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG-GLIF 142 (328)
T ss_dssp SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred cccceeEEEEEecceeeccchhHHHHHHHHHhccCCC-eEEE
Confidence 1227999874 222 1 22244445789996 8774
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=94.42 E-value=0.022 Score=42.37 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc-EEeCCCCCCchHHHHHHhh-cCCCc
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVDL-TDGGV 141 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~i~~~-~~~~~ 141 (255)
++++++||-.|+|. |..+..+++. |..+|++++.|++..+.+++ .+.. .+.-.. .+.. -... .++.|
T Consensus 22 ~~~~~~VLDlGCG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~---~D~~--~~~~~~~~~f 94 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA---QDSY--GRHMDLGKEF 94 (252)
T ss_dssp CCTTCEEEEETCTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEE---SCTT--TSCCCCSSCE
T ss_pred CCCcCEEEEecccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEE---cchh--hhcccccccc
Confidence 57899999999875 6566677665 44389999999998888753 3321 111000 0000 0011 12279
Q ss_pred cEEEecCCc------H----HHHHHHHHHhccCCceEEEE
Q 025257 142 DYSFECIGN------V----SVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 142 d~v~d~~g~------~----~~~~~~~~~l~~~~G~~v~~ 171 (255)
|+|+....- + ..+..+.+.|+++ |.++..
T Consensus 95 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g-G~~i~~ 133 (252)
T d1ri5a_ 95 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPG-GYFIMT 133 (252)
T ss_dssp EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred eEEEEcceeeecCCCHHHHHHHHHHHhceeCCC-CEEEEE
Confidence 999753321 1 2356677889997 988754
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.39 Score=37.37 Aligned_cols=109 Identities=18% Similarity=0.254 Sum_probs=69.9
Q ss_pred HhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhcCCcEEeCCCC---------------
Q 025257 63 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRAKNFGVTEFVNPKD--------------- 124 (255)
Q Consensus 63 ~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~---~~~~~~~~~~~g~~~vi~~~~--------------- 124 (255)
.+...++++..|+...+|..|.+++..++.+|. +.+++.. +++|.+.++.+|++.+.....
T Consensus 89 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi-~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~ 167 (355)
T d1jbqa_ 89 ERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGY-RCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWR 167 (355)
T ss_dssp HHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHH
T ss_pred HHcCCcccCceEEEecccchhhHHHHHHHhccC-CeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHH
Confidence 345567777777666779999999999999999 6666643 457888889999875432110
Q ss_pred ---------------CCch-------HHHHHHhhcCCCccEEEecCCcHHHHH---HHHHHhccCCceEEEEcc
Q 025257 125 ---------------HDKP-------IQQVLVDLTDGGVDYSFECIGNVSVMR---AALECCHKGWGTSVIVGV 173 (255)
Q Consensus 125 ---------------~~~~-------~~~~i~~~~~~~~d~v~d~~g~~~~~~---~~~~~l~~~~G~~v~~g~ 173 (255)
.+.+ ...++.+-.++.+|.++-++|+-..+. ..++...++ -+++.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~-~kii~vep 240 (355)
T d1jbqa_ 168 LKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPG-CRIIGVDP 240 (355)
T ss_dssp HHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEEE
T ss_pred HHHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCc-ceEEeecc
Confidence 0111 122333333346899999998654344 344445555 67777654
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.41 E-value=0.02 Score=42.35 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=28.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
.|+|.|+|+.|+.++..++..|.++|+++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 589999999999999999999974699998754
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.027 Score=43.36 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
++..+|+|.|+|..|+.++..++..|. +|++.+.++
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~ 38 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARD 38 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence 456789999999999999999999999 999998653
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=94.36 E-value=0.12 Score=40.00 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=33.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 025257 70 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF 108 (255)
Q Consensus 70 ~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~ 108 (255)
+.++|+|+|+ |-+|..++..+...|. +|++++|++++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~~ 40 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGL 40 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcchh
Confidence 4578999998 9999999999999999 999999876643
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.34 E-value=0.026 Score=43.33 Aligned_cols=43 Identities=26% Similarity=0.265 Sum_probs=33.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhcC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFG 115 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~--~~~~~~~~g 115 (255)
++|||+|+ |-+|..++..+...|. +|+++++... ..+.++.++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~ 46 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELG 46 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhc
Confidence 48999998 9999999998888899 9999987543 344555444
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=94.30 E-value=0.033 Score=41.21 Aligned_cols=35 Identities=34% Similarity=0.383 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
-.|.+|+|.|.|.||..+++++...|+ +|++++.+
T Consensus 29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD~ 63 (242)
T d1v9la1 29 IEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSDI 63 (242)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeecc
Confidence 478999999999999999999999999 99988743
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.28 E-value=0.034 Score=39.18 Aligned_cols=83 Identities=28% Similarity=0.348 Sum_probs=56.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.|.+|.|+|.|.+|...+++++..|. +|++.++++.. +..... .++.+.++ ..|+|+-++.
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~-------~~~~~~------~~l~ell~-----~sDiv~~~~p 101 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKE-------GPWRFT------NSLEEALR-----EARAAVCALP 101 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCC-------SSSCCB------SCSHHHHT-----TCSEEEECCC
T ss_pred cCceEEEeccccccccceeeeecccc-ccccccccccc-------cceeee------echhhhhh-----ccchhhcccc
Confidence 57899999999999999999999999 99999976532 111111 22333333 4788876553
Q ss_pred c-HHH----HHHHHHHhccCCceEEEEc
Q 025257 150 N-VSV----MRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 150 ~-~~~----~~~~~~~l~~~~G~~v~~g 172 (255)
- +.+ -...++.++++ ..+|.++
T Consensus 102 l~~~t~~li~~~~l~~mk~~-ailIN~~ 128 (181)
T d1qp8a1 102 LNKHTRGLVKYQHLALMAED-AVFVNVG 128 (181)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred cccccccccccceeeecccc-ceEEecc
Confidence 2 221 25677778885 7777664
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=94.21 E-value=0.06 Score=41.56 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcE--EeCCCCCCchHHHHHHhhc-CC-C
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVDLT-DG-G 140 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~i~~~~-~~-~ 140 (255)
.+|++||=.++|+ |..++.+++ .+. +|++++.+++..+.+++ .|.+. ++. .+..+.++.+. .+ .
T Consensus 144 ~~g~rVLDl~~gt-G~~s~~~a~-g~~-~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~-----~d~~~~~~~~~~~~~~ 215 (318)
T d1wxxa2 144 FRGERALDVFSYA-GGFALHLAL-GFR-EVVAVDSSAEALRRAEENARLNGLGNVRVLE-----ANAFDLLRRLEKEGER 215 (318)
T ss_dssp CCEEEEEEETCTT-THHHHHHHH-HEE-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEE-----SCHHHHHHHHHHTTCC
T ss_pred hCCCeeeccCCCC-cHHHHHHHh-cCC-cEEeecchHHHHHHHHHHHHHcCCCCcceee-----ccHHHHhhhhHhhhcC
Confidence 4689999887754 444455554 345 99999999998888853 45432 222 22333333222 23 7
Q ss_pred ccEEE-ecCC----c----------HHHHHHHHHHhccCCceEEEEcc
Q 025257 141 VDYSF-ECIG----N----------VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 141 ~d~v~-d~~g----~----------~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
||+|+ |... . ...+..+++++++| |.++.+..
T Consensus 216 fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~sc 262 (318)
T d1wxxa2 216 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASC 262 (318)
T ss_dssp EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred CCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 99998 4221 1 11356778889997 99888755
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.065 Score=40.32 Aligned_cols=104 Identities=8% Similarity=0.010 Sum_probs=58.5
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHH----c---CCCeEEEEcCCcchHHHHHhc-C----Cc-EEeCCCCC-CchHHHH
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKA----A---GASRVIGIDIDPKKFDRAKNF-G----VT-EFVNPKDH-DKPIQQV 132 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~----~---g~~~v~~~~~~~~~~~~~~~~-g----~~-~vi~~~~~-~~~~~~~ 132 (255)
..+++-+||-.|+|. |..+..+++. . +. ++++++.++...+.+++. . .. .-++.... .+++...
T Consensus 37 ~~~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~-~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (280)
T d1jqea_ 37 DTKSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCI-NNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSR 114 (280)
T ss_dssp TTCSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEE-EEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHH
T ss_pred cCCCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCce-EEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcch
Confidence 345555899999864 5454444443 2 23 678999888877777542 1 11 11222220 0122222
Q ss_pred HHhhcCC-CccEEEecCC-----c-HHHHHHHHHHhccCCceEEEEcc
Q 025257 133 LVDLTDG-GVDYSFECIG-----N-VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 133 i~~~~~~-~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
....... .||+|+-... . ...+..+.++|+++ |.++....
T Consensus 115 ~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg-G~l~i~~~ 161 (280)
T d1jqea_ 115 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN-AKMLIIVV 161 (280)
T ss_dssp HTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred hcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC-CEEEEEEe
Confidence 2222233 8999975222 2 34588999999997 98776643
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.15 E-value=0.042 Score=39.38 Aligned_cols=42 Identities=36% Similarity=0.553 Sum_probs=37.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 115 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g 115 (255)
+|.|+|.|-+|+..+..+...|. +|++++.++++.+.+++-.
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~g~ 43 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQGK 43 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTC
T ss_pred EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcccC
Confidence 58899999999999988888999 9999999999888886643
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=94.15 E-value=0.028 Score=41.78 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=29.6
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
-|+|.|+|+.|++++..+...|. +|++++++++
T Consensus 6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~ 38 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK 38 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 38899999999999999999999 9999998764
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.06 E-value=0.034 Score=39.86 Aligned_cols=86 Identities=21% Similarity=0.167 Sum_probs=55.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+.+|.|+|.|.+|..++++++..|. +|++.++...+.. ..... . .++.+.+. ..|++.-++.
T Consensus 44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~---~~~~~----~----~~l~~l~~-----~~D~v~~~~p 106 (199)
T d1dxya1 44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMKGD---HPDFD----Y----VSLEDLFK-----QSDVIDLHVP 106 (199)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSSC---CTTCE----E----CCHHHHHH-----HCSEEEECCC
T ss_pred cceeeeeeecccccccccccccccce-eeeccCCccchhh---hcchh----H----HHHHHHHH-----hcccceeeec
Confidence 46799999999999999999999999 9999997644311 00111 1 23333333 2677765433
Q ss_pred -cHHH----HHHHHHHhccCCceEEEEcc
Q 025257 150 -NVSV----MRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 -~~~~----~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+.+ -...++.|+++ ..+|-++-
T Consensus 107 lt~~T~~li~~~~l~~mk~~-a~lIN~aR 134 (199)
T d1dxya1 107 GIEQNTHIINEAAFNLMKPG-AIVINTAR 134 (199)
T ss_dssp CCGGGTTSBCHHHHHHSCTT-EEEEECSC
T ss_pred ccccccccccHHHhhccCCc-eEEEeccc
Confidence 2221 25677888886 77776654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=94.05 E-value=0.068 Score=39.75 Aligned_cols=101 Identities=10% Similarity=-0.093 Sum_probs=65.8
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-CcEEeCCCCCCchHHHHHHhhc--CCC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG-VTEFVNPKDHDKPIQQVLVDLT--DGG 140 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~~~i~~~~--~~~ 140 (255)
+.....++.+||-.|+|. |..+..++...+. +|++++.+++-.+.+++.- ....+++.. .+ +.++. .+.
T Consensus 87 ~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~--~d----~~~~~~~~~~ 158 (254)
T d1xtpa_ 87 ASLPGHGTSRALDCGAGI-GRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFIL--AS----METATLPPNT 158 (254)
T ss_dssp HTSTTCCCSEEEEETCTT-THHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEE--SC----GGGCCCCSSC
T ss_pred hhCCCCCCCeEEEecccC-ChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEE--cc----ccccccCCCc
Confidence 445556788999999985 8888888887766 9999999999888886532 111111111 11 11222 237
Q ss_pred ccEEEecCC-----cH---HHHHHHHHHhccCCceEEEEcc
Q 025257 141 VDYSFECIG-----NV---SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 141 ~d~v~d~~g-----~~---~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
||+|+-.-. .+ ..+..+.+.|+++ |.++....
T Consensus 159 fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg-G~iii~e~ 198 (254)
T d1xtpa_ 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPN-GYIFFKEN 198 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cceEEeeccccccchhhhHHHHHHHHHhcCCC-cEEEEEec
Confidence 999975322 12 2367888899997 98887543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=94.05 E-value=0.11 Score=36.19 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=37.9
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 116 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~ 116 (255)
+|-|.|.|.+|...+.-+...|. +|++.++++++.+.+.+.+.
T Consensus 3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~ 45 (178)
T d1pgja2 3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANA 45 (178)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTT
T ss_pred EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCC
Confidence 47788999999999999989999 99999999999998866553
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=94.03 E-value=0.03 Score=41.27 Aligned_cols=32 Identities=44% Similarity=0.543 Sum_probs=28.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
|+|.|+|+.|+.++..+...|. +|+++++++.
T Consensus 5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~ 36 (251)
T d2i0za1 5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNK 36 (251)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence 7899999999999988889999 9999997654
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=94.00 E-value=0.031 Score=42.50 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=31.5
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 70 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 70 ~~~~vlI~G~-g--~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
+|+++||+|+ | ++|.+.++.+...|+ +|+...++++
T Consensus 7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~ 45 (297)
T d1d7oa_ 7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPA 45 (297)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchh
Confidence 6789999997 5 899999999999999 9999887654
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.90 E-value=0.21 Score=39.20 Aligned_cols=31 Identities=35% Similarity=0.316 Sum_probs=28.0
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID 102 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~ 102 (255)
|.+|||+|+ |-+|..+++.+...|. +|++++
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD 32 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD 32 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence 679999998 9999999999999999 999997
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.78 E-value=0.033 Score=40.15 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=28.0
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus 6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~~ 36 (221)
T d1dxla1 6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRG 36 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHHTC-CEEEEECSS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence 7888999999999999999999 999998653
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.018 Score=40.80 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=31.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
++..|+|.|+|+.|+.++..+.+.|. +|+++++.+.
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~~ 39 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGMEK 39 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSST
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeecc
Confidence 45679999999999999999999999 9999986543
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=93.60 E-value=0.22 Score=36.02 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=58.0
Q ss_pred EEEEEcCChHHHH-HHHHHHHc-CCCeEEEE-cCCcchHHHH-HhcCCc--EEeCCCCCCchHHHHHHhhcCC-CccEEE
Q 025257 73 IVAVFGLGTVGLA-VAEGAKAA-GASRVIGI-DIDPKKFDRA-KNFGVT--EFVNPKDHDKPIQQVLVDLTDG-GVDYSF 145 (255)
Q Consensus 73 ~vlI~G~g~vG~~-a~~l~~~~-g~~~v~~~-~~~~~~~~~~-~~~g~~--~vi~~~~~~~~~~~~i~~~~~~-~~d~v~ 145 (255)
+|.|.|+|.+|.. .+...+.. +. +++++ ++++++.+.+ +++|.+ .+..+.+ + .++... .+|+|+
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d----~----~ell~~~~iD~V~ 105 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN----F----DKIAKDPKIDAVY 105 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSSS----G----GGGGGCTTCCEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccCc----h----hhhcccccceeee
Confidence 7888999988863 44444443 66 77765 5566665554 666643 2322322 2 222223 799999
Q ss_pred ecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 146 ECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 146 d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
-|+......+.+..++.. |+=+.+..
T Consensus 106 I~tp~~~H~~~~~~al~~--gk~v~~EK 131 (221)
T d1h6da1 106 IILPNSLHAEFAIRAFKA--GKHVMCEK 131 (221)
T ss_dssp ECSCGGGHHHHHHHHHHT--TCEEEECS
T ss_pred eccchhhhhhHHHHhhhc--chhhhcCC
Confidence 998887778889999988 45556644
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.58 E-value=0.48 Score=30.71 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=60.0
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 152 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 152 (255)
.++|.|.|.+|..+++.++ |. .+++++.++++.+.+++.|...+.-. ..-.+.+++..-..++.++-++....
T Consensus 2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i~Gd----~~~~~~L~~a~i~~A~~vi~~~~~d~ 74 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFVHGD----PTRVSDLEKANVRGARAVIVNLESDS 74 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEEESC----TTSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCccccccc----cCCHHHHHHhhhhcCcEEEEeccchh
Confidence 5788999999998888774 55 78888989999998888887655422 22234455543237888887777544
Q ss_pred H---HHHHHHHhccCCceEEEE
Q 025257 153 V---MRAALECCHKGWGTSVIV 171 (255)
Q Consensus 153 ~---~~~~~~~l~~~~G~~v~~ 171 (255)
. .-...+.+.+. .+++..
T Consensus 75 ~n~~~~~~~r~~~~~-~~iia~ 95 (129)
T d2fy8a1 75 ETIHCILGIRKIDES-VRIIAE 95 (129)
T ss_dssp HHHHHHHHHHHHCSS-SCEEEE
T ss_pred hhHHHHHHHHHHCCC-ceEEEE
Confidence 2 23344455564 555544
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=93.57 E-value=0.036 Score=38.74 Aligned_cols=30 Identities=27% Similarity=0.199 Sum_probs=27.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 103 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~ 103 (255)
-|+|.|+|+.|+.++..+...|. +|+++++
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~-~v~iie~ 32 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGI-RTGLMGE 32 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred cEEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence 37899999999999999999999 9999985
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.21 Score=37.71 Aligned_cols=101 Identities=18% Similarity=0.237 Sum_probs=59.9
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhcCCcEE-eCCCCCCchHHHHHHhhcC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF-VNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v-i~~~~~~~~~~~~i~~~~~ 138 (255)
....++++++||-.-|++=|.. .+++....-.+|++.+.++.|.+.+ +.+|...+ +...+ ...... ...
T Consensus 96 ~~L~~~~g~~vLD~CAaPGgKt-~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~--~~~~~~---~~~ 169 (284)
T d1sqga2 96 TWLAPQNGEHILDLCAAPGGKT-THILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG--RYPSQW---CGE 169 (284)
T ss_dssp HHHCCCTTCEEEEESCTTCHHH-HHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT--TCTHHH---HTT
T ss_pred cccCccccceeEeccCccccch-hhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc--cccchh---ccc
Confidence 3457899999998844332333 2333333323899999999998776 45776533 22222 211111 112
Q ss_pred CCccEEE-e--cCCcHH-------------------------HHHHHHHHhccCCceEEEE
Q 025257 139 GGVDYSF-E--CIGNVS-------------------------VMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 139 ~~~d~v~-d--~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~ 171 (255)
+.||.|+ | |+|... .+..+++.+++| |++|..
T Consensus 170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g-G~lvYs 229 (284)
T d1sqga2 170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYA 229 (284)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEE
T ss_pred ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC-ceEEEe
Confidence 3799997 5 555422 367777788996 877654
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.43 E-value=0.42 Score=32.05 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcch
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKK 107 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~ 107 (255)
..+.+|.|.|+|.+|...+..+...|. .+++.++..+++
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~ 43 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK 43 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence 356789999999999998888887774 378899987765
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=93.39 E-value=0.097 Score=35.67 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 108 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~ 108 (255)
++..+|.|.|+|.+|..++.++...+..+++.++.++++.
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~ 44 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMP 44 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHH
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccc
Confidence 5667899999999999988888888866899998877653
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.38 E-value=0.03 Score=42.12 Aligned_cols=32 Identities=34% Similarity=0.456 Sum_probs=28.9
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
+|+|.|+|..|+.++..++..|. +|++++.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 58999999999999999999999 999998753
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.28 E-value=0.056 Score=40.96 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=30.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 103 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~ 103 (255)
+|.+|+|.|.|.||..+++++...|+ +|++++.
T Consensus 35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vsD 67 (293)
T d1hwxa1 35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVGE 67 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEc
Confidence 67899999999999999999999999 9998863
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=93.27 E-value=0.054 Score=40.31 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 103 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~ 103 (255)
-++.+|+|.|.|.||..+++++...|+ +|+++..
T Consensus 34 l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavsD 67 (255)
T d1bgva1 34 LVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLSG 67 (255)
T ss_dssp STTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 477899999999999999999999999 9998864
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=93.26 E-value=0.099 Score=33.63 Aligned_cols=34 Identities=18% Similarity=0.016 Sum_probs=27.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHHc---CCCeEEEEcCCc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAA---GASRVIGIDIDP 105 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~---g~~~v~~~~~~~ 105 (255)
.++++|.|+|.+|.-+++++..+ |. +|..+.+++
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~ 54 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGD 54 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhccccc-ccceecccc
Confidence 37899999999999888776655 77 898888653
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=93.17 E-value=0.055 Score=41.36 Aligned_cols=33 Identities=27% Similarity=0.234 Sum_probs=29.6
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
.|+|+|||..|++++..++..|. +|+++++.++
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~~ 41 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAGD 41 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCCC
Confidence 58999999999999999999999 9999997643
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.13 Score=35.45 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=62.7
Q ss_pred ccccchhhhhhHHHhhcCC-CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCc
Q 025257 50 LLGCGVPTGLGAVWNTAKV-EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 127 (255)
Q Consensus 50 ~~~~~~~ta~~~l~~~~~~-~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~ 127 (255)
.+||+....+. +.+..++ -.|++|+|.|. ..+|.-+..++...|+ .|+...... .
T Consensus 16 ~~PcTp~aI~~-lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t---------------------~ 72 (166)
T d1b0aa1 16 LRPCTPRGIVT-LLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT---------------------K 72 (166)
T ss_dssp SCCHHHHHHHH-HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC---------------------S
T ss_pred CCCchHHHHHH-HHHHcCcccccceEEEEeccccccHHHHHHHHHhhc-ccccccccc---------------------c
Confidence 44543333333 3344554 47899999997 6899999999999999 887665321 3
Q ss_pred hHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 128 PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 128 ~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++.+.++ ..|+++-++|.+..+. -+.++++ ..++.+|..
T Consensus 73 ~l~~~~~-----~ADivI~a~G~p~~i~--~~~vk~g-~vvIDvGi~ 111 (166)
T d1b0aa1 73 NLRHHVE-----NADLLIVAVGKPGFIP--GDWIKEG-AIVIDVGIN 111 (166)
T ss_dssp CHHHHHH-----HCSEEEECSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred hhHHHHh-----hhhHhhhhccCccccc--ccccCCC-cEEEecCce
Confidence 3433443 3799999999876332 3467885 788888763
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.052 Score=39.45 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=28.2
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
|+|.|+|..|+.++..+...|. +|.++++++
T Consensus 8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence 7889999999999999999999 999999864
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.91 E-value=0.08 Score=36.45 Aligned_cols=35 Identities=37% Similarity=0.348 Sum_probs=29.1
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDP 105 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~ 105 (255)
|++|+|.|+|..|+.+++.++..+.. +|+++++++
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 68999999999999999888888742 788887654
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.27 Score=33.94 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=64.2
Q ss_pred cccccchhhhhhHHHhhcCCC-CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCC
Q 025257 49 CLLGCGVPTGLGAVWNTAKVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 126 (255)
Q Consensus 49 a~~~~~~~ta~~~l~~~~~~~-~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~ 126 (255)
+.+||+....+. +.+..++. .|++|+|.|. ..+|.-++.++...|+ .|.......
T Consensus 17 ~~~PcTp~aii~-lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t--------------------- 73 (170)
T d1a4ia1 17 CFIPCTPKGCLE-LIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT--------------------- 73 (170)
T ss_dssp CCCCHHHHHHHH-HHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC---------------------
T ss_pred CCCCChHHHHHH-HHHHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEeccc---------------------
Confidence 445544433333 34555554 7899999997 6899999999999999 888776432
Q ss_pred chHHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 127 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 127 ~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.++.+.++ ..|+++-++|.+. + .--++++++ -.++.+|..
T Consensus 74 ~~l~~~~~-----~aDivi~a~G~~~-~-i~~~~vk~g-~iviDvgi~ 113 (170)
T d1a4ia1 74 AHLDEEVN-----KGDILVVATGQPE-M-VKGEWIKPG-AIVIDCGIN 113 (170)
T ss_dssp SSHHHHHT-----TCSEEEECCCCTT-C-BCGGGSCTT-CEEEECCCB
T ss_pred ccHHHHHh-----hccchhhcccccc-c-cccccccCC-CeEeccCcc
Confidence 22322332 4788888888876 2 223578886 788888764
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.87 E-value=0.13 Score=34.91 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=30.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
-+++|+|+|+|.+|.=.+..+...|+..|+++.+.+
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 457899999999999999999999996677877643
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.016 Score=40.20 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=54.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcC----Cc----EEeCCCCCCchHHHHHHhhcCCCcc
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFG----VT----EFVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g----~~----~vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
+|.|.|+ |-+|+++++++... ++ ++++...++.....-++.| .. .+.+..+ .. ...+|
T Consensus 6 kI~i~Ga~GrMG~~i~~~i~~~~~~-~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~----------~~-~~~~D 73 (162)
T d1diha1 6 RVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLD----------AV-KDDFD 73 (162)
T ss_dssp EEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCST----------TT-TTSCS
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecccchhccchhhhhhccccCCceeeccHH----------HH-hcccc
Confidence 6888897 99999999988876 56 6665543322111111111 00 0111111 11 12689
Q ss_pred EEEecCCcHHHHHHHHHHhccCCceEEEEccCCC
Q 025257 143 YSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 176 (255)
Q Consensus 143 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~ 176 (255)
+++|.+.... ....++.+... ++=+.+|.++.
T Consensus 74 ViIDFs~p~~-~~~~~~~a~~~-~~~~ViGTTG~ 105 (162)
T d1diha1 74 VFIDFTRPEG-TLNHLAFCRQH-GKGMVIGTTGF 105 (162)
T ss_dssp EEEECSCHHH-HHHHHHHHHHT-TCEEEECCCCC
T ss_pred eEEEeccHHH-HHHHHHHHHhc-cceeEEecCCC
Confidence 9999987766 67777777764 78888887654
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.25 Score=37.99 Aligned_cols=31 Identities=29% Similarity=0.184 Sum_probs=27.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 103 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~ 103 (255)
++|||+|+ |-+|..++..+...|. +|+++++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence 68999998 9999999999988998 9999863
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=92.65 E-value=0.066 Score=39.90 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=28.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
-|+|.|+|.+|+.++..+...|. +|+++++.+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 48999999999999988888998 999999753
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=92.64 E-value=0.14 Score=32.98 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=40.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCC--eEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEec
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFEC 147 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~--~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~ 147 (255)
.++++|.|+|.+|.-++..++.+|.. +|..+.+.+. ++..-+ ++..+.+.+.... ++++.+++
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~------------iL~~~d--~~~~~~l~~~l~~~GV~v~~~~ 85 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM------------ILRGFD--HTLREELTKQLTANGIQILTKE 85 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS------------SSTTSC--HHHHHHHHHHHHHTTCEEEESC
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch------------hhcccc--hHHHHHHHHHHHhcCcEEEcCC
Confidence 47999999999999988887777642 6888876421 111111 5555555544434 77777764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.24 Score=38.05 Aligned_cols=32 Identities=31% Similarity=0.272 Sum_probs=28.5
Q ss_pred EE-EEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 73 IV-AVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~v-lI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
+| ||+|+ |-+|..++..+...|+ +|+++++..
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~ 35 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS 35 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred CEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence 57 99998 8999999999988999 999999854
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.62 E-value=0.7 Score=30.76 Aligned_cols=69 Identities=23% Similarity=0.273 Sum_probs=46.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhcC-C------cEEeCCCCCCchHHHHHHhhcCCCcc
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFG-V------TEFVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~~~~~~g-~------~~vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
.+|.|.|| |.+|...+.++...|. .+++.++.++.+.+.+ ++. + ...+. . .+..+.++ +.|
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~-Dl~~~~~~~~~~~~~~--~--~~~~~~~~-----~aD 70 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA-DLSHIETRATVKGYLG--P--EQLPDCLK-----GCD 70 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH-HHTTSSSSCEEEEEES--G--GGHHHHHT-----TCS
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH-HHhhhhhhcCCCeEEc--C--CChHHHhC-----CCC
Confidence 36889997 9999999999998885 4788888776554333 221 1 11221 1 44444443 689
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+|+-+.|.
T Consensus 71 ivVitag~ 78 (144)
T d1mlda1 71 VVVIPAGV 78 (144)
T ss_dssp EEEECCSC
T ss_pred EEEECCCc
Confidence 99998884
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.60 E-value=0.064 Score=38.66 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=28.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
.++|+|+|+.|+.++..++.+|. +|.+++..
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 47889999999999999999999 99999864
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=92.58 E-value=0.045 Score=40.69 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=62.2
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHH----HhcCC-cEEeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRA----KNFGV-TEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~----~~~g~-~~vi~~~~~~~~~~~~i~~ 135 (255)
+.....+.+..+||-.|+|. |..+..+++.. +. ++++++. ++..+.+ .+.|. +.+ .... .++ .+
T Consensus 72 ~~~~~d~~~~~~VLDvGcG~-G~~~~~la~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~rv-~~~~--~D~----~~ 141 (253)
T d1tw3a2 72 PAAAYDWTNVRHVLDVGGGK-GGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRV-DVVE--GDF----FE 141 (253)
T ss_dssp HHHHSCCTTCSEEEEETCTT-SHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTE-EEEE--CCT----TS
T ss_pred HHhhcCCccCCEEEEeCCCC-CHHHHHHHHhccee-EEEEccC-HHHHHHHHHHHHHhhcccch-hhcc--ccc----hh
Confidence 44566778889999999874 88888999887 45 8888886 4444444 33342 111 1110 111 01
Q ss_pred hcCCCccEEEecC-----CcH---HHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDGGVDYSFECI-----GNV---SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~~~d~v~d~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
...+++|+|+-.. ..+ ..++.+.+.|+++ |+++....
T Consensus 142 ~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG-G~l~i~e~ 186 (253)
T d1tw3a2 142 PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG-GRILIHER 186 (253)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred hcccchhheeeccccccCCchhhHHHHHHHHHhcCCC-cEEEEEec
Confidence 1112689987322 122 2377888999997 99988754
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.56 E-value=0.06 Score=37.46 Aligned_cols=31 Identities=29% Similarity=0.304 Sum_probs=26.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 101 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~ 101 (255)
.+++|+|.|+|.+|.-++..++.+|. ++.++
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~ 32 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIR 32 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEE
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCC-ceEEE
Confidence 57899999999999999999999998 55444
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.52 E-value=0.074 Score=38.63 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=28.2
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
|+|.|+||.|+.++..+...|. +|++++..+
T Consensus 9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~~~ 39 (229)
T d1ojta1 9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYK 39 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence 7888999999999999999999 999998654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=92.52 E-value=0.051 Score=42.04 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=26.4
Q ss_pred EEEEEcCChHHHHHHHHHH-----HcCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAK-----AAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~-----~~g~~~v~~~~~~~ 105 (255)
-|+|.|+|++|++++..+. ..|. +|+++++.+
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS 45 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence 3889999999999887774 4699 999998754
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=92.48 E-value=0.042 Score=43.12 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=24.9
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 103 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~ 103 (255)
+|||+|+ |-+|..++..+...|...|++++.
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~ 33 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK 33 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 6999997 999999999888889834555553
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.41 E-value=0.077 Score=38.39 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=28.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
-|+|+|+|+.|+.++..+...|. +|++++..++
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~-kV~lie~~~~ 39 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGK 39 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCC
Confidence 37889999999999999999999 9999986543
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.41 E-value=0.053 Score=41.38 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=28.6
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
.|+|.|||..|+.++..+...|. +|.+++.++
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~ 34 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN 34 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence 47899999999999999988998 999998754
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.35 E-value=0.075 Score=37.51 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=28.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
..|+|.|+|+.|+.++..+...|. +++++++.
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~ 37 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGW 37 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEee
Confidence 579999999999999999999999 99988754
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.34 E-value=0.1 Score=36.96 Aligned_cols=39 Identities=36% Similarity=0.436 Sum_probs=33.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~ 113 (255)
+|.|.|.|-+|+..+.++ +.|. +|++++.++++.+.+++
T Consensus 2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~ 40 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN 40 (196)
T ss_dssp EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence 588899999999887666 4699 99999999999888865
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=92.33 E-value=0.21 Score=35.41 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=58.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
+.|+.+||-.|+|. |..+..+ . ++++++.+++..+.+++.+...+...- .++ ...++.||+|+..
T Consensus 34 ~~~~~~vLDiGcG~-G~~~~~~-----~-~~~giD~s~~~~~~a~~~~~~~~~~d~---~~l-----~~~~~~fD~I~~~ 98 (208)
T d1vlma_ 34 LLPEGRGVEIGVGT-GRFAVPL-----K-IKIGVEPSERMAEIARKRGVFVLKGTA---ENL-----PLKDESFDFALMV 98 (208)
T ss_dssp HCCSSCEEEETCTT-STTHHHH-----T-CCEEEESCHHHHHHHHHTTCEEEECBT---TBC-----CSCTTCEEEEEEE
T ss_pred hCCCCeEEEECCCC-ccccccc-----c-eEEEEeCChhhcccccccccccccccc---ccc-----ccccccccccccc
Confidence 45677899999863 5444333 3 678999999999999887765443222 111 1112379999853
Q ss_pred CC-----c-HHHHHHHHHHhccCCceEEEEcc
Q 025257 148 IG-----N-VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 148 ~g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.. . ...++.+.+.|+++ |+++....
T Consensus 99 ~~l~h~~d~~~~l~~~~~~L~pg-G~l~i~~~ 129 (208)
T d1vlma_ 99 TTICFVDDPERALKEAYRILKKG-GYLIVGIV 129 (208)
T ss_dssp SCGGGSSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cccccccccccchhhhhhcCCCC-ceEEEEec
Confidence 22 2 22478999999997 98877644
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.31 E-value=0.081 Score=37.95 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=27.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
|+|.|+|+.|+.++..+...|. +|.++++..
T Consensus 6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~~ 36 (223)
T d1ebda1 6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN 36 (223)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEecCC
Confidence 6788999999999999999999 999998653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.27 E-value=0.31 Score=31.83 Aligned_cols=62 Identities=23% Similarity=0.240 Sum_probs=48.8
Q ss_pred HHhhcCCCCCCEEEEE-cCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCC
Q 025257 62 VWNTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 123 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~-G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 123 (255)
..+..++..-+.+++. ..-..-+.++++++.+|..++++...+++..+.++++|++.++++.
T Consensus 57 ~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~ 119 (132)
T d1lssa_ 57 TLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE 119 (132)
T ss_dssp HHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred hhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHH
Confidence 3466777777766654 3345567888999999987899999999999999999999998754
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.27 E-value=0.06 Score=38.57 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=41.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
++|||+|+ |-+|..+++.+...|.. +|++..+++.. ....+ .... .++.+. .+...+.+|.|+.|+|
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------~~~~~-~~~~--~d~~~~-~~~~~~~~d~vi~~~g 71 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------EHPRL-DNPV--GPLAEL-LPQLDGSIDTAFCCLG 71 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------CCTTE-ECCB--SCHHHH-GGGCCSCCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------hcccc-cccc--cchhhh-hhccccchheeeeeee
Confidence 68999998 99999999988888852 55555544211 00111 1111 333332 3333337899999987
Q ss_pred c
Q 025257 150 N 150 (255)
Q Consensus 150 ~ 150 (255)
.
T Consensus 72 ~ 72 (212)
T d2a35a1 72 T 72 (212)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=0.067 Score=38.39 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=27.6
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
|+|+|+|+.|+.++..+..+|. +|.++++.
T Consensus 5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~ 34 (217)
T d1gesa1 5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK 34 (217)
T ss_dssp EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence 7889999999999999999999 99999864
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.013 Score=43.74 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~ 113 (255)
...++.+||-+|+|+ |.....+++. +..+|++++-++...+.+++
T Consensus 48 ~~~~g~~vLDlGcG~-G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~ 92 (257)
T d2a14a1 48 GGLQGDTLIDIGSGP-TIYQVLAACD-SFQDITLSDFTDRNREELEK 92 (257)
T ss_dssp TSCCEEEEEESSCTT-CCGGGTTGGG-TEEEEEEEESCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCC-CHhHHHHhcc-ccCcEEEecCCHHHHHHHHH
Confidence 456788899889874 5444444444 44389999999998888854
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.23 E-value=1.1 Score=30.56 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=51.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcC--CC-eEEEEcCCcch---------------HHHHHhcCCcEEeCCCCCCchHHHHHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAG--AS-RVIGIDIDPKK---------------FDRAKNFGVTEFVNPKDHDKPIQQVLV 134 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g--~~-~v~~~~~~~~~---------------~~~~~~~g~~~vi~~~~~~~~~~~~i~ 134 (255)
+|.+.|.|.||...++++.... .. +++++..+... .+........ . ........
T Consensus 6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~ 77 (168)
T d1ebfa1 6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTK------T--LPLDDLIA 77 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCB------C--CCHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccc------c--ccHHHHHH
Confidence 5788899999999998777543 21 56666543211 1111111110 0 11111111
Q ss_pred hhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 135 DLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 135 ~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
..... ..++++||+++....+.....+..+ -++|..
T Consensus 78 ~~~~~~~~~vivd~t~~~~~~~~~~~aL~~G-~hVVTA 114 (168)
T d1ebfa1 78 HLKTSPKPVILVDNTSSAYIAGFYTKFVENG-ISIATP 114 (168)
T ss_dssp HHTTCSSCEEEEECSCCHHHHTTHHHHHHTT-CEEECC
T ss_pred HhccCCCceEEEEecCChHHHHHHHHHHHcC-CeEEec
Confidence 12223 6789999999988666777788885 666654
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Probab=92.19 E-value=0.87 Score=34.45 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=62.6
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc---CCcchHHHHHhcCCcEEeCCCC----------------
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID---IDPKKFDRAKNFGVTEFVNPKD---------------- 124 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~---~~~~~~~~~~~~g~~~vi~~~~---------------- 124 (255)
+...+.++..|+...+|.-|.+++..++..|. +.+++. .++.+.+.++.+|+..+.-...
T Consensus 54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~-~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~ 132 (310)
T d1y7la1 54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGY-KITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVAS 132 (310)
T ss_dssp HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTC-CEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCceeeeecCCCchHHHHHHHHHhhc-cccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHh
Confidence 44566788777666779999999999999999 544443 2445777778888865531111
Q ss_pred ------------CCch-------HHHHHHhhcCCCccEEEecCCcHHHHHHHHHHhc
Q 025257 125 ------------HDKP-------IQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 162 (255)
Q Consensus 125 ------------~~~~-------~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~ 162 (255)
++.. ..+++.+..++.+|.++-++|+-..+.-..+.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk 189 (310)
T d1y7la1 133 DPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIK 189 (310)
T ss_dssp CTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHH
T ss_pred hcCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHH
Confidence 0011 1234444444478999988887665666655554
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.17 E-value=0.52 Score=30.30 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=52.5
Q ss_pred CCEEEEEcCCh-----------HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcC-CcEEe-CCCCCCchHHHHHHhhc
Q 025257 71 GSIVAVFGLGT-----------VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG-VTEFV-NPKDHDKPIQQVLVDLT 137 (255)
Q Consensus 71 ~~~vlI~G~g~-----------vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g-~~~vi-~~~~~~~~~~~~i~~~~ 137 (255)
.++|||+|+|+ .+-.+++-+|..|. +++.+-.+++.... +.. +++++ .+-. .+....+.+.
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVst--d~d~aD~lYfeplt--~e~v~~Ii~~- 77 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVST--DYDTSDRLYFEPVT--LEDVLEIVRI- 77 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSSTT--STTSSSEEECCCCS--HHHHHHHHHH-
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhhc--ChhhcCceEEccCC--HHHHHHHHHH-
Confidence 46899999863 23456677778899 99999988876642 222 34443 2222 2333332222
Q ss_pred CCCccEEEecCCcHHHHHHHHHHhcc
Q 025257 138 DGGVDYSFECIGNVSVMRAALECCHK 163 (255)
Q Consensus 138 ~~~~d~v~d~~g~~~~~~~~~~~l~~ 163 (255)
+..|.|+-..|+...++.+..+-+.
T Consensus 78 -E~p~~ii~~~GGQtalnla~~L~~~ 102 (121)
T d1a9xa4 78 -EKPKGVIVQYGGQTPLKLARALEAA 102 (121)
T ss_dssp -HCCSEEECSSSTHHHHTTHHHHHHT
T ss_pred -hCCCEEEeehhhhhHHHHHHHHHHc
Confidence 2678888888888766655554444
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=0.073 Score=40.94 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=27.9
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
|+|.|+|..|+.++..++..|. +|++++.++
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 7899999999999999999999 999998643
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.10 E-value=0.046 Score=39.62 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=58.1
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHH----hcCCcEEeCCCCCCchHHHHHHhh---cC
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDL---TD 138 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~i~~~---~~ 138 (255)
..+.++||-+|.+. |..++.+++++ +. +|+.++.+++..+.++ ..|...-+.... .+..+.+.++ ..
T Consensus 54 ~~kpk~ILEiGt~~-G~Sti~la~al~~~g-~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~--Gd~~e~l~~l~~~~~ 129 (214)
T d2cl5a1 54 EYSPSLVLELGAYC-GYSAVRMARLLQPGA-RLLTMEMNPDYAAITQQMLNFAGLQDKVTILN--GASQDLIPQLKKKYD 129 (214)
T ss_dssp HHCCSEEEEECCTT-SHHHHHHHTTCCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE--SCHHHHGGGHHHHSC
T ss_pred hhCCCEEEEEccCc-hhHHHHHHHhCCCcc-EEEEEeccHHHHHHHHHHHHHcCCCccceeee--ccccccccchhhccc
Confidence 33447999999753 66777888865 45 9999999988777663 446432111111 3333333332 22
Q ss_pred C-CccEEE-ecCCcHH----HHHHHHHHhccCCceEEEEcc
Q 025257 139 G-GVDYSF-ECIGNVS----VMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 139 ~-~~d~v~-d~~g~~~----~~~~~~~~l~~~~G~~v~~g~ 173 (255)
. .+|++| |..-... .+...++.+++| |. +.+..
T Consensus 130 ~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpG-Gv-Iv~Dd 168 (214)
T d2cl5a1 130 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKG-TV-LLADN 168 (214)
T ss_dssp CCCEEEEEECSCGGGHHHHHHHHHHTTCEEEE-EE-EEESC
T ss_pred ccccceeeecccccccccHHHHHHHhCccCCC-cE-EEEeC
Confidence 2 699998 4332211 144556678995 65 44543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.07 E-value=0.1 Score=38.43 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=31.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
++.+|+|.|+|++|..+++.+...|..+++.++.+
T Consensus 29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 34799999999999999999999999888888743
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.91 E-value=0.11 Score=35.02 Aligned_cols=91 Identities=16% Similarity=0.038 Sum_probs=52.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g--~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
-+|.|.|+ |-+|+-.++++..++ ..++..+.++...-+.+...+.+..+ .+. ....-.++|++|-|.
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~------~~~----~~~~~~~~d~vf~a~ 72 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRV------GDV----DSFDFSSVGLAFFAA 72 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEEC------EEG----GGCCGGGCSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchh------ccc----hhhhhccceEEEecC
Confidence 46899998 999999999997543 22676665443222211111111111 001 111111689999999
Q ss_pred CcHHHHHHHHHHhccCCceEEEEcc
Q 025257 149 GNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+...+.+..-.....+ .+++..+.
T Consensus 73 p~~~s~~~~~~~~~~g-~~VID~Ss 96 (144)
T d2hjsa1 73 AAEVSRAHAERARAAG-CSVIDLSG 96 (144)
T ss_dssp CHHHHHHHHHHHHHTT-CEEEETTC
T ss_pred CcchhhhhccccccCC-ceEEeech
Confidence 8887555566666664 67776544
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=91.85 E-value=0.095 Score=37.61 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=27.3
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
|+|+|+|+-|+.++..|...|. +|.+++..
T Consensus 6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~ 35 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY 35 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence 7888999999999999999999 99999854
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.071 Score=39.84 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~ 113 (255)
+..++.++|-.|+|+ |...+..+...+. +|++++-++..++.+++
T Consensus 51 g~~~g~~vLDiGcG~-g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~ 95 (263)
T d2g72a1 51 GEVSGRTLIDIGSGP-TVYQLLSACSHFE-DITMTDFLEVNRQELGR 95 (263)
T ss_dssp SCSCCSEEEEETCTT-CCGGGTTGGGGCS-EEEEECSCHHHHHHHHH
T ss_pred CCCCCcEEEEeccCC-CHHHHHHhcccCC-eEEEEeCCHHHHHHHHH
Confidence 445678999999875 4443334444455 99999999998888865
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.83 E-value=0.17 Score=34.17 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=38.7
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEE--cCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~--G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
..|....+ ..+..+++.++|. |+|-+|+-+++.+..+|. +|..+.+.+
T Consensus 25 v~t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~ 74 (156)
T d1djqa2 25 QLTPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH 74 (156)
T ss_dssp EECHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred EECHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence 34555543 3567788899888 678999999999999999 999999764
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=91.73 E-value=0.98 Score=30.89 Aligned_cols=98 Identities=20% Similarity=0.226 Sum_probs=57.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc--chHHHHHhc----C---CcE-------EeCCCC----CCchHHHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP--KKFDRAKNF----G---VTE-------FVNPKD----HDKPIQQV 132 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~--~~~~~~~~~----g---~~~-------vi~~~~----~~~~~~~~ 132 (255)
+|.|.|-|-+|..+.+.+...+. +++++-... +....+-+. | ... +++-+. ...+. ++
T Consensus 2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p-~~ 79 (168)
T d2g82a1 2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDP-KE 79 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSG-GG
T ss_pred EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCCh-HH
Confidence 57899999999999999888898 888775432 233333222 1 110 110000 00111 11
Q ss_pred HHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 133 LVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 133 i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+. |...++|+|+||+|.-...+.+..++..+ .+=|.+..+
T Consensus 80 i~-W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP 119 (168)
T d2g82a1 80 IP-WAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITAP 119 (168)
T ss_dssp CC-TGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESSC
T ss_pred Cc-ccccCCceeEeccccccchHHhhhhhccc-cceeeeccc
Confidence 21 11127999999999766567778888875 544455443
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.71 E-value=0.72 Score=29.54 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=63.6
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
+.++.+|+|.|- |.-|....+.++.+|- ++++-+...+.-+.. .|. .++| ...|.+++ + ++|.-+-
T Consensus 4 i~k~trVivQGiTG~~G~~ht~~m~~yGT-~iVaGVtPgkgG~~~--~gi-PVf~------tV~eAv~~-~--~~d~SvI 70 (121)
T d1oi7a1 4 VNRETRVLVQGITGREGQFHTKQMLTYGT-KIVAGVTPGKGGMEV--LGV-PVYD------TVKEAVAH-H--EVDASII 70 (121)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECTTCTTCEE--TTE-EEES------SHHHHHHH-S--CCSEEEE
T ss_pred ecCCCcEEEEcCCCcHHHHHHHHHHHhCC-ceEeeeecCCCCcEE--ECC-chHh------hHHHHHHh-c--CCeEEEE
Confidence 356789999996 9999999999999998 988888643332221 122 2453 34455554 3 4777777
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEE
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.+..+...+.++..+..+ -.++.+
T Consensus 71 fVPp~~a~dAi~EAi~ag-I~liv~ 94 (121)
T d1oi7a1 71 FVPAPAAADAALEAAHAG-IPLIVL 94 (121)
T ss_dssp CCCHHHHHHHHHHHHHTT-CSEEEE
T ss_pred eeCHHHHHHHHHHHHhCC-CcEEEE
Confidence 788888788888888885 666555
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=91.68 E-value=0.43 Score=35.54 Aligned_cols=72 Identities=15% Similarity=0.276 Sum_probs=43.3
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC--CcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEEEecCC
Q 025257 74 VAVFGL-GTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIG 149 (255)
Q Consensus 74 vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~--~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v~d~~g 149 (255)
|||+|+ |-+|..++..+...|..+|++++. +..+.....+......++. .++.+.+.....- .++.++.+.+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~aa 77 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDK----EDFLIQIMAGEEFGDVEAIFHEGA 77 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEH----HHHHHHHHTTCCCSSCCEEEECCS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccc----hHHHHHHhhhhcccchhhhhhhcc
Confidence 799997 899999998888889646888752 2333444455544333332 2333333333222 6777776543
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.59 E-value=0.24 Score=33.47 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 108 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~ 108 (255)
|..+|-|.|+|.+|...+.++...+..+++.++.++++.
T Consensus 2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~ 40 (150)
T d1t2da1 2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMP 40 (150)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence 456899999999999988888888887999899877553
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=91.49 E-value=0.11 Score=38.81 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=27.3
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
|+|.|+|.+|+.++..+...|. +|+++++.
T Consensus 6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~ 35 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF 35 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 7899999999999988888999 99999864
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.48 E-value=0.57 Score=35.83 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHH-HcCCCeEEEEcCCcchHHHH----HhcCCcEEeCCCCCCchHHHHHHhhcCCCccE
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRA----KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~-~~g~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~ 143 (255)
+...++.|+|+|..+..-++.+. .+..++|.+..+++++.+.+ +..+.....+. .+.+. +.|+
T Consensus 123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~-------~~a~~-----~aDi 190 (320)
T d1omoa_ 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP-------AEEAS-----RCDV 190 (320)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC-------HHHHT-----SSSE
T ss_pred CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch-------hhhhc-----cccE
Confidence 44578899999988877665555 45777999999999887665 34454433321 12332 5899
Q ss_pred EEecCCcHH-HHHHHHHHhccCCceEEEEccCC
Q 025257 144 SFECIGNVS-VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 144 v~d~~g~~~-~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
|+-|+.+.. .+. .+.++++ -++..+|...
T Consensus 191 V~taT~s~~P~~~--~~~l~~G-~hv~~iGs~~ 220 (320)
T d1omoa_ 191 LVTTTPSRKPVVK--AEWVEEG-THINAIGADG 220 (320)
T ss_dssp EEECCCCSSCCBC--GGGCCTT-CEEEECSCCS
T ss_pred EEEeccCcccccc--hhhcCCC-CeEeecCCcc
Confidence 998777533 122 2468886 8888888864
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=91.41 E-value=0.79 Score=30.98 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=55.6
Q ss_pred EEEEEcCChHHHH-HHHHHHHc-CCCeEEEEc-CCcchHHHH-HhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecC
Q 025257 73 IVAVFGLGTVGLA-VAEGAKAA-GASRVIGID-IDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 148 (255)
Q Consensus 73 ~vlI~G~g~vG~~-a~~l~~~~-g~~~v~~~~-~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~ 148 (255)
+|.|.|+|.+|.- .+..++.. +. +++++. +++++.+.+ ++++... + .++.+ +. ..+|+|+.|+
T Consensus 3 ri~iIG~G~~g~~~~~~~l~~~~~~-~i~~v~d~~~~~~~~~~~~~~~~~-~------~~~~~-l~----~~~D~V~I~t 69 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAAASDW-TLQGAWSPTRAKALPICESWRIPY-A------DSLSS-LA----ASCDAVFVHS 69 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSE-EEEEEECSSCTTHHHHHHHHTCCB-C------SSHHH-HH----TTCSEEEECS
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEEechhHhhhhhhhcccccc-c------ccchh-hh----hhcccccccc
Confidence 5889999998864 56666544 66 777664 555655544 6677642 2 22222 22 1589999888
Q ss_pred CcHHHHHHHHHHhccCCceEEEEcc
Q 025257 149 GNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 149 g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
......+.+..++..+ +=+.+.-
T Consensus 70 p~~~h~~~~~~al~~g--k~V~~EK 92 (164)
T d1tlta1 70 STASHFDVVSTLLNAG--VHVCVDK 92 (164)
T ss_dssp CTTHHHHHHHHHHHTT--CEEEEES
T ss_pred cchhcccccccccccc--ceeeccc
Confidence 8777688888888884 4455544
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.12 Score=36.99 Aligned_cols=30 Identities=37% Similarity=0.421 Sum_probs=27.3
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
|+|.|+|+.|+.++..+...|. +|.+++..
T Consensus 6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGA-RAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence 6788999999999999999999 99999754
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.27 E-value=0.13 Score=37.27 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=27.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCCcc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPK 106 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~--g~~~v~~~~~~~~ 106 (255)
.+|.|.|+|+.|+.+++.++.. |. +|++++..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCC
Confidence 4799999999999999866544 67 9999987653
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=91.26 E-value=0.12 Score=39.02 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=27.0
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
.|+|.|+|.+|++++..+...|.++|++++++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 58999999999998877777897469999865
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=91.23 E-value=0.12 Score=39.28 Aligned_cols=32 Identities=41% Similarity=0.585 Sum_probs=28.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
-|+|.|+|..|+.++..|...|. +|++++..+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGA-KVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 37899999999999999999999 999998654
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=91.15 E-value=0.9 Score=28.97 Aligned_cols=90 Identities=20% Similarity=0.253 Sum_probs=61.7
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 68 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 68 ~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
+.++.+|+|.|- |.-|....+..+.+|- +|++-+...+.-+. -.|. .++| ...+.+++. ++|.-+-
T Consensus 3 i~k~trVlvQGiTG~~G~~ht~~m~~yGT-~vVaGVtPgkgG~~--~~gi-PVf~------sV~eAv~~~---~~~~SvI 69 (119)
T d2nu7a1 3 IDKNTKVICQGFTGSQGTFHSEQAIAYGT-KMVGGVTPGKGGTT--HLGL-PVFN------TVREAVAAT---GATASVI 69 (119)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECTTCTTEE--ETTE-EEES------SHHHHHHHH---CCCEEEE
T ss_pred ecCCCcEEEEcCCCcHHHHHHHHHHHhCC-ceEEEEccCCCCcc--cCCC-chhh------HHHHHHHHh---CCCeEEE
Confidence 356789999997 9999999999999999 98887754332221 1232 2553 344455543 4677777
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEE
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
.+..+...+.++..+..+ =+++.+
T Consensus 70 fVPp~~a~dA~~EAi~ag-I~~iV~ 93 (119)
T d2nu7a1 70 YVPAPFCKDSILEAIDAG-IKLIIT 93 (119)
T ss_dssp CCCGGGHHHHHHHHHHTT-CSEEEE
T ss_pred eccHHHHHHHHHHHHHCC-CCEEEE
Confidence 788777778888888885 555544
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.13 E-value=0.16 Score=37.17 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHH-HHcCCCeEEEEcC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGIDI 103 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~-~~~g~~~v~~~~~ 103 (255)
-++.+|+|.|.|.||..+++++ +..|+ +|++++.
T Consensus 29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vsd 63 (234)
T d1b26a1 29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVSD 63 (234)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEeec
Confidence 4688999999999999999887 56799 9988863
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=91.01 E-value=0.057 Score=37.50 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=52.3
Q ss_pred EEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCCcH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 151 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~~ 151 (255)
+|.|+|.|.+|...+..++.. ++ +++++.....+. .....+..+. ++ .... ..+|+|+.|++..
T Consensus 5 rvgiiG~G~ig~~~~~~l~~~~~~-elvav~~~~~~~-----~~~~~~~~~~----~~----~~~~-~~~D~Vvi~tp~~ 69 (170)
T d1f06a1 5 RVAIVGYGNLGRSVEKLIAKQPDM-DLVGIFSRRATL-----DTKTPVFDVA----DV----DKHA-DDVDVLFLCMGSA 69 (170)
T ss_dssp EEEEECCSHHHHHHHHHHTTCSSE-EEEEEEESSSCC-----SSSSCEEEGG----GG----GGTT-TTCSEEEECSCTT
T ss_pred eEEEECChHHHHHHHHHHHhCCCc-EEEEEEeccccc-----ccccccccch----hh----hhhc-cccceEEEeCCCc
Confidence 689999999999888777765 56 677665332211 1111121111 11 1111 2699999999887
Q ss_pred HHHHHHHHHhccCCceEEEE
Q 025257 152 SVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 152 ~~~~~~~~~l~~~~G~~v~~ 171 (255)
...+.+.+++..| -.++.+
T Consensus 70 ~h~~~a~~aL~aG-~~vv~~ 88 (170)
T d1f06a1 70 TDIPEQAPKFAQF-ACTVDT 88 (170)
T ss_dssp THHHHHHHHHTTT-SEEECC
T ss_pred ccHHHHHHHHHCC-CcEEEe
Confidence 7689999999995 666543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=91.00 E-value=0.82 Score=31.76 Aligned_cols=103 Identities=28% Similarity=0.395 Sum_probs=64.9
Q ss_pred hhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCc--EEeCCCCCCchHHHHHHhhcCCC
Q 025257 64 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EFVNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~--~vi~~~~~~~~~~~~i~~~~~~~ 140 (255)
....+++|..+ |-+. |+=|+ ...+++. +. +|+++++.++..+.++++-.. ..+...- .++.+.+.....+.
T Consensus 12 ~~l~~~~g~~~-vD~T~G~GGh-s~~iL~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~f--~~~~~~l~~~~~~~ 85 (182)
T d1wg8a2 12 DLLAVRPGGVY-VDATLGGAGH-ARGILER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGNF--RHLKRHLAALGVER 85 (182)
T ss_dssp HHHTCCTTCEE-EETTCTTSHH-HHHHHHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESCG--GGHHHHHHHTTCSC
T ss_pred HhcCCCCCCEE-EEeCCCCcHH-HHHHhcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehHH--HHHHHHHHHcCCCc
Confidence 44567888865 4443 54354 3444553 56 999999999988888765322 2333332 66666665543347
Q ss_pred ccEEE-ecCCcHH---------------HHHHHHHHhccCCceEEEEccC
Q 025257 141 VDYSF-ECIGNVS---------------VMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 141 ~d~v~-d~~g~~~---------------~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+|.|+ |. |-.. .++...+.++++ |+++.+...
T Consensus 86 vdgIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~g-g~~~ii~fh 133 (182)
T d1wg8a2 86 VDGILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPG-GRLVVIAFH 133 (182)
T ss_dssp EEEEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE-EEEEEEECS
T ss_pred cCEEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCC-CeEEEEecc
Confidence 88887 53 4321 267778888996 888877553
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.94 E-value=0.19 Score=35.32 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=56.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+.+|.|+|.|.+|...+++++..|. +|+..++..... ... .... .++.+.++ ..|++.-+..
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-----~~~--~~~~----~~l~ell~-----~sDii~i~~p 105 (188)
T d1sc6a1 43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENKLP-----LGN--ATQV----QHLSDLLN-----MSDVVSLHVP 105 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCC-----CTT--CEEC----SCHHHHHH-----HCSEEEECCC
T ss_pred cceEEEEeecccchhhhhhhcccccc-eEeeccccccch-----hhh--hhhh----hhHHHHHh-----hccceeeccc
Confidence 56899999999999999999999999 999999753311 000 1111 23444443 2677765443
Q ss_pred -cHH----HHHHHHHHhccCCceEEEEcc
Q 025257 150 -NVS----VMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 150 -~~~----~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.+. .-+..++.++++ ..+|-++-
T Consensus 106 lt~~T~~li~~~~l~~mk~~-a~lIN~aR 133 (188)
T d1sc6a1 106 ENPSTKNMMGAKEISLMKPG-SLLINASR 133 (188)
T ss_dssp SSTTTTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred CCcchhhhccHHHHhhCCCC-CEEEEcCc
Confidence 221 125777888885 77776644
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.94 E-value=0.86 Score=31.93 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=65.4
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh----cCCc-EEeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~----~g~~-~vi~~~~~~~~~~~~i~~ 135 (255)
+.....+++++.++=.++|. |..+..+++.. +. +|++++++++..+.+++ ++.. .++...- .++...+.+
T Consensus 15 vi~~l~~~~~~~~lD~t~G~-Gghs~~il~~~~~~-~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f--~~~~~~~~~ 90 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGE-GGHSRAILEHCPGC-RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY--READFLLKT 90 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTT-SHHHHHHHHHCTTC-EEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG--GGHHHHHHH
T ss_pred HHHhhCCCCCCEEEEecCCC-cHHHHHHHhcCCCC-eEEEeechHHHHHHHHHhhccccccccchhHHH--hhHHHHHHH
Confidence 34556788988765444454 44444555555 55 99999999998888854 2322 2333332 556555555
Q ss_pred hcCCCccEEE-ecCCcH--------------HHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDGGVDYSF-ECIGNV--------------SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~~~d~v~-d~~g~~--------------~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
...+.+|.|+ |.--+. ..+..+.+.++++ |+++.+..
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g-G~l~ii~f 142 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG-GRIVVISF 142 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE-EEEEEEES
T ss_pred cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC-Ceeeeecc
Confidence 5444799886 532111 2366777788886 88877654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.87 E-value=0.61 Score=35.54 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=61.1
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHH----HhcCCcEEeCCCCCCchHHHHHHhhcC
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRA----KNFGVTEFVNPKDHDKPIQQVLVDLTD 138 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~i~~~~~ 138 (255)
....+++|++||=.-|++ |.=+.+++...+ -..+++.+.++.+.+.+ +.+|...++...++...+ ....
T Consensus 110 ~~l~~~~g~~vlD~CAap-GgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~-----~~~~ 183 (313)
T d1ixka_ 110 VALDPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI-----GELN 183 (313)
T ss_dssp HHHCCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG-----GGGC
T ss_pred hcccCCccceeeecccch-hhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc-----cccc
Confidence 445789999988774433 222334444443 22799999999888776 456765544333200111 1122
Q ss_pred CCccEEE-e--cCCcHH-------------------------HHHHHHHHhccCCceEEEEcc
Q 025257 139 GGVDYSF-E--CIGNVS-------------------------VMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 139 ~~~d~v~-d--~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+.||.|+ | |+|... .+..+++++++| |++|..-.
T Consensus 184 ~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g-G~lVYsTC 245 (313)
T d1ixka_ 184 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVYSTC 245 (313)
T ss_dssp CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred ccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC-cEEEEeec
Confidence 3789887 5 555311 367888899996 87765533
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.84 E-value=0.11 Score=37.72 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=27.4
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
|+|+|+|+.|+.++..|...|. +|.+++..
T Consensus 6 viVIG~GpaGl~aA~~aa~~G~-kV~viE~~ 35 (235)
T d1h6va1 6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDFV 35 (235)
T ss_dssp EEEECCSHHHHHHHHHHGGGCC-CEEEECCC
T ss_pred EEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence 7889999999999999999999 99999853
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.78 E-value=0.091 Score=38.10 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=28.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcC-------CCeEEEEcCCcc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAG-------ASRVIGIDIDPK 106 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g-------~~~v~~~~~~~~ 106 (255)
.+|+|.|+|+.|++++..+...| . +|.+.+..+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~-~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCC-ceEEEecCCC
Confidence 48999999999999998888776 4 7899987654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=90.61 E-value=0.14 Score=39.49 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=26.8
Q ss_pred CEEEEEcCChHHHHHHHHHHHcC--CCeEEEEcCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAG--ASRVIGIDIDP 105 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g--~~~v~~~~~~~ 105 (255)
++|+|.|||+.|++++..++..| . +|++.++++
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~-~v~vfEk~~ 39 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFD-QVTLFERRG 39 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCS-EEEEECSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCC-CEEEEECCC
Confidence 68999999999998886665544 5 899999764
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=90.54 E-value=0.13 Score=36.03 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=51.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEE-eCCCCCCchHHHHHHhhcCCCccEEEecCCc
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 150 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 150 (255)
+|.|.|+ |-+|+-.++++..+-.-++..+..+...-+.+.+...... .+... .... .+..-.+.|++|-|...
T Consensus 7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~Dvvf~alp~ 81 (183)
T d2cvoa1 7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPN-LVAV----KDADFSNVDAVFCCLPH 81 (183)
T ss_dssp EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCC-CBCG----GGCCGGGCSEEEECCSS
T ss_pred EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcccccccccccccccc-chhh----hhhhhcccceeeecccc
Confidence 6899998 9999999999997632266666543322222221111000 00000 0000 00000169999999998
Q ss_pred HHHHHHHHHHhccCCceEEEEcc
Q 025257 151 VSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 151 ~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
.. .......+... +.++....
T Consensus 82 ~~-s~~~~~~l~~~-~~~v~~~~ 102 (183)
T d2cvoa1 82 GT-TQEIIKGLPQE-LKIVDLSA 102 (183)
T ss_dssp SH-HHHHHHTSCSS-CEEEECSS
T ss_pred ch-HHHHHHHHHhc-Ccccccch
Confidence 77 44555667775 77765543
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=90.32 E-value=0.8 Score=31.37 Aligned_cols=98 Identities=19% Similarity=0.318 Sum_probs=58.7
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhc----C---Cc-------EEeCCCC----CCchHHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRAKNF----G---VT-------EFVNPKD----HDKPIQQ 131 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~---~~~~~~~~~~~----g---~~-------~vi~~~~----~~~~~~~ 131 (255)
+|.|.|-|-+|.++.+.+...+. .++++-. +.+....+-+. | .+ .+++-+. ...+. +
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p-~ 79 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKP-E 79 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSG-G
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCCh-H
Confidence 57899999999999998888888 7777753 22444444332 1 11 0111000 00111 1
Q ss_pred HHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 132 VLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 132 ~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++. |..-++|+|+||+|.-...+.+...+..+ .+=|.+..+
T Consensus 80 ~i~-W~~~gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisaP 120 (169)
T d1dssg1 80 NIP-WSKAGAEYIVESTGVFTTIEKASAHFKGG-AKKVIISAP 120 (169)
T ss_dssp GCC-HHHHTCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESSC
T ss_pred HCC-ccccCCCEEEecCceEcCHHHHHHHHhcC-CceEeecCC
Confidence 111 11117999999999866577888888885 655666553
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=90.08 E-value=0.12 Score=38.57 Aligned_cols=61 Identities=21% Similarity=0.395 Sum_probs=37.7
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
+|||+|+ |-+|..++..+...| ++++++++... . ..|-.+ ...+.+.+++. .+|+|+++++
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g--~~v~~~~~~~~------~----~~Dl~~-~~~~~~~i~~~---~~D~Vih~Aa 63 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVG--NLIALDVHSKE------F----CGDFSN-PKGVAETVRKL---RPDVIVNAAA 63 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTS--EEEEECTTCSS------S----CCCTTC-HHHHHHHHHHH---CCSEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--CEEEEECCCcc------c----cCcCCC-HHHHHHHHHHc---CCCEEEEecc
Confidence 6999998 999999998887766 46666554321 1 112222 12233333322 6899999886
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=90.01 E-value=0.16 Score=38.87 Aligned_cols=32 Identities=44% Similarity=0.599 Sum_probs=28.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
-|+|.|+|..|+.++.-|...|+ +|++++..+
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~ 52 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP 52 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 47899999999999999999999 999998653
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=89.94 E-value=1.3 Score=30.59 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=53.0
Q ss_pred CCCCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCC-CccEE
Q 025257 68 VEPGSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYS 144 (255)
Q Consensus 68 ~~~~~~vlI~G~--g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~-~~d~v 144 (255)
++++.+|+=+|+ |+--+.+.+.. -...++++++..+.+ .......+.-.-.+....+.+.....+ .+|+|
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~--~~~~~v~~vDl~~~~-----~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlV 92 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQI--GGKGRIIACDLLPMD-----PIVGVDFLQGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHH--CTTCEEEEEESSCCC-----CCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeEEEEeccCCcceEEEEeec--cccceEEEeeccccc-----ccCCceEeecccccchhhhhhhhhccCcceeEE
Confidence 689999999986 44433333322 222378888865432 121112221111114444455554444 89999
Q ss_pred E-----ecCCcHH------------HHHHHHHHhccCCceEEEE
Q 025257 145 F-----ECIGNVS------------VMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 145 ~-----d~~g~~~------------~~~~~~~~l~~~~G~~v~~ 171 (255)
+ |++|... .+..+.+.|+++ |.++.=
T Consensus 93 lSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~g-G~fV~K 135 (180)
T d1ej0a_ 93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVK 135 (180)
T ss_dssp EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EecccchhcccchhHHHHHHHHHHHHHHhhhhccCCC-CcEEEE
Confidence 7 3444432 366777889996 887643
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=89.88 E-value=0.3 Score=36.92 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=26.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 103 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~ 103 (255)
++|||+|+ |-+|..+++.+...|. .+++++.
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~ 34 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT 34 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecC
Confidence 48999998 9999999999988998 7777654
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.80 E-value=0.5 Score=37.16 Aligned_cols=53 Identities=25% Similarity=0.171 Sum_probs=40.4
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhcCCcEEe
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRAKNFGVTEFV 120 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~---~~~~~~~~~~~g~~~vi 120 (255)
+++++..|+-..+|..|.+++..++.+|. +++++.. ++.|.+.++.+|++.+.
T Consensus 140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGi-k~~Iv~P~~~~~~K~~~ira~GAeVi~ 195 (382)
T d1wkva1 140 RVEKGSLVADATSSNFGVALSAVARLYGY-RARVYLPGAAEEFGKLLPRLLGAQVIV 195 (382)
T ss_dssp TSCTTCEEEEECCHHHHHHHHHHHHHTTC-EEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCEEEEeCCcHHHHHHHHHHHHcCC-CEEEEeeccccccccccccccCcceee
Confidence 56777765544569999999999999999 6666643 45677788999987654
|
| >d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: YjeF N-terminal domain-like superfamily: YjeF N-terminal domain-like family: YjeF N-terminal domain-like domain: Hypothetical protein TM0922, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.63 E-value=2 Score=30.44 Aligned_cols=104 Identities=21% Similarity=0.163 Sum_probs=59.2
Q ss_pred hhHHHhhcCCCCCCEEEEE-cC---ChHHHHHHHHHHHcCCCeEEEEcCCcch-------HHHHHhcCCcEEeCCCCCCc
Q 025257 59 LGAVWNTAKVEPGSIVAVF-GL---GTVGLAVAEGAKAAGASRVIGIDIDPKK-------FDRAKNFGVTEFVNPKDHDK 127 (255)
Q Consensus 59 ~~~l~~~~~~~~~~~vlI~-G~---g~vG~~a~~l~~~~g~~~v~~~~~~~~~-------~~~~~~~g~~~vi~~~~~~~ 127 (255)
+..+.+...-.+..+|+|+ |. |+=|+.+++.++..|+ +|.++...+++ .+..++.+... ++..+ +
T Consensus 28 a~~i~~~~~~~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~ 103 (211)
T d2ax3a2 28 VLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVK-DVLVVFLGKKKTPDCEYNYGLYKKFGGKV-VEQFE--P 103 (211)
T ss_dssp HHHHHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSS-EEEEEECCSSCCHHHHHHHHHHHHTTCCE-ESCCC--G
T ss_pred HHHHHHhcccccCCcEEEEECCCCCchhHHHHHHHHHhcCC-eeEEEecCccCCcHHHHHHHHHHHcCCcc-ccccc--c
Confidence 3334444333345677777 53 5667888888888898 88777543332 22223455442 23221 1
Q ss_pred hHHHHHHhhcCCCccEEEecCCc--------HHHHHHHHHHhccCCceEEEEccCC
Q 025257 128 PIQQVLVDLTDGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 128 ~~~~~i~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
.. . ..+|+++|+.=+ .. +...++.+......++.+..++
T Consensus 104 ~~------~--~~~dlIIDal~G~Gl~~~l~~~-~~~~i~~iN~~~~~vlsiDiPS 150 (211)
T d2ax3a2 104 SI------L--NEFDVVVDAIFGTGLRGEITGE-YAEIINLVNKSGKVVVSVDVPS 150 (211)
T ss_dssp GG------G--GGCSEEEEESCCTTCCSCCCHH-HHHHHHHHHHSCCEEEEESSCT
T ss_pred cc------c--cCceEEEEecccCCccccchHH-HHHHHHHHHhhccceeeeccCc
Confidence 11 1 158999998742 33 6777777776524677776543
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=89.63 E-value=0.16 Score=38.00 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=26.6
Q ss_pred EEEEEcCChHHHHHHHH-HHHcCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEG-AKAAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l-~~~~g~~~v~~~~~~~ 105 (255)
-|+|.|+|+.|+.++.. ++..|. +|.++++++
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~ 67 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV 67 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence 48999999999988765 555799 999999765
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.59 E-value=0.29 Score=33.09 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=55.2
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCC--CeEEEEcCCcchHHHHHhcCCcE-EeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 71 GSIVAVFGL-GTVGLAVAEGAKAAGA--SRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~~l~~~~g~--~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
|-+|.|.|+ |-+|.-.++++..+.. .++...+++....+.+....... ..+..+ .++ ...|++|-
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~--~~~---------~~~d~~f~ 69 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTE--TAF---------EGVDIALF 69 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCT--TTT---------TTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccch--hhh---------hhhhhhhh
Confidence 347999998 9999999999987743 14444443322111111111111 111111 111 16899999
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+.+...+.+...+....+ -+++..+..
T Consensus 70 ~~~~~~s~~~~~~~~~~~-~~VIDlSsd 96 (154)
T d2gz1a1 70 SAGSSTSAKYAPYAVKAG-VVVVDNTSY 96 (154)
T ss_dssp CSCHHHHHHHHHHHHHTT-CEEEECSST
T ss_pred ccCccchhhHHhhhcccc-ceehhcChh
Confidence 998877677777777886 888888653
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.53 E-value=0.23 Score=38.22 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=28.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 025257 72 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 103 (255)
Q Consensus 72 ~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~ 103 (255)
+++||+|+ |-+|..++..+...|. +|+++++
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~ 48 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN 48 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence 68999998 9999999999999999 9999975
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=89.21 E-value=0.18 Score=38.55 Aligned_cols=31 Identities=45% Similarity=0.724 Sum_probs=27.8
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
|+|.|+|..|+.++..|...|+ +|+++++.+
T Consensus 26 VvVIG~G~aGl~aA~~la~~G~-~V~llEk~~ 56 (322)
T d1d4ca2 26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEP 56 (322)
T ss_dssp EEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 8999999999999988888999 999998654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=89.13 E-value=0.16 Score=37.68 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=62.1
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHH----HhcCC-cEEeCCCCCCchHHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRA----KNFGV-TEFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~----~~~g~-~~vi~~~~~~~~~~~~i~~ 135 (255)
+.....+.+..+||-.|+|. |..+..+++.. +. ++++++. ++-.+.+ ++.|. +.+. ... .++ . +
T Consensus 73 ~~~~~d~~~~~~vlDvG~G~-G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~-~~~--~d~---~-~ 142 (256)
T d1qzza2 73 PADAYDWSAVRHVLDVGGGN-GGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVT-VAE--GDF---F-K 142 (256)
T ss_dssp HHHTSCCTTCCEEEEETCTT-SHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEE-EEE--CCT---T-S
T ss_pred HHhcCCCccCCEEEEECCCC-CHHHHHHHHhhcCc-EEEEecC-hHHHHHHHHHHhhcCCcceee-eee--eec---c-c
Confidence 44556677888999999875 88999999987 56 9999985 5544444 33442 2111 000 111 0 1
Q ss_pred hcCCCccEEEec-----CCcH---HHHHHHHHHhccCCceEEEEcc
Q 025257 136 LTDGGVDYSFEC-----IGNV---SVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 136 ~~~~~~d~v~d~-----~g~~---~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
....++|+++-. ...+ ..++.+.+.|+++ |+++.+..
T Consensus 143 ~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg-G~llI~d~ 187 (256)
T d1qzza2 143 PLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG-GRLLVLDR 187 (256)
T ss_dssp CCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred cccccchhhhccccccccCcHHHHHHHHHHHhhcCCc-ceeEEEEe
Confidence 111268888732 1222 2367888999997 99998864
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=89.01 E-value=0.18 Score=38.56 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=28.0
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
|+|.|+|+.|+.++-.|...|+ +|++++..+
T Consensus 8 VvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~ 38 (336)
T d2bs2a2 8 SLVIGGGLAGLRAAVATQQKGL-STIVLSLIP 38 (336)
T ss_dssp EEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence 8899999999999999999999 999998654
|
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.95 E-value=3.1 Score=31.38 Aligned_cols=107 Identities=19% Similarity=0.149 Sum_probs=65.5
Q ss_pred hhcCCCCCCEEEEE-cCChHHHHHHHHHHHcCCCeEEEEc---CCcchHHHHHhcCCcEEeCCC----------------
Q 025257 64 NTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGID---IDPKKFDRAKNFGVTEFVNPK---------------- 123 (255)
Q Consensus 64 ~~~~~~~~~~vlI~-G~g~vG~~a~~l~~~~g~~~v~~~~---~~~~~~~~~~~~g~~~vi~~~---------------- 123 (255)
+...++++...+|. .+|..|.+.+..++.+|. +.+++. .++.+.+.++.+|++.++...
T Consensus 57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~-~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~ 135 (320)
T d1z7wa1 57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGY-KLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILA 135 (320)
T ss_dssp HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCceEEeeCCchHHHHHHHHHHhhcc-ceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHH
Confidence 45566666555555 469999999999999998 655553 345677888889986443211
Q ss_pred -----------CCCch-------HHHHHHhhcCCCccEEEecCCcHHHHHHHH---HHhccCCceEEEEc
Q 025257 124 -----------DHDKP-------IQQVLVDLTDGGVDYSFECIGNVSVMRAAL---ECCHKGWGTSVIVG 172 (255)
Q Consensus 124 -----------~~~~~-------~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~---~~l~~~~G~~v~~g 172 (255)
+++.+ ...++.+-..+.+|.++-++|+...+.-++ +...+. -+++.+.
T Consensus 136 ~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~-~~~igve 204 (320)
T d1z7wa1 136 KTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNAN-VKLYGVE 204 (320)
T ss_dssp HCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred hCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcc-eeeeccc
Confidence 00111 223443333346899998888755444433 444554 5666553
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.86 E-value=0.14 Score=35.53 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=58.4
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh--c--CCcEEe---CCCCCCchHHHHHHhhcCCC
Q 025257 69 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN--F--GVTEFV---NPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 69 ~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~--~--g~~~vi---~~~~~~~~~~~~i~~~~~~~ 140 (255)
-.|++|+|.|- .-+|.=++.++...|+ .|........ .++-+. . -...+- .... +.+.+..+ .
T Consensus 27 l~GK~vvVIGrS~iVG~Pla~lL~~~ga-TVt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~lk~~~~-----~ 97 (171)
T d1edza1 27 LYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNI-QKFTRGESLKLNKHHVEDLGEYSE--DLLKKCSL-----D 97 (171)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEE-EEEESCCCSSCCCCEEEEEEECCH--HHHHHHHH-----H
T ss_pred CCCCEEEEECCccccHHHHHHHHHHCCC-EEEEeccccc-cccccccceeeeeeccccccccch--hHHhhccc-----c
Confidence 47899999997 6889988888888999 8877664321 111000 0 011111 1111 11222222 4
Q ss_pred ccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 141 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
.|+++-++|.+. +.---+++++| ..++.+|..
T Consensus 98 aDIvIsavG~p~-~~i~~d~ik~G-avvIDvGi~ 129 (171)
T d1edza1 98 SDVVITGVPSEN-YKFPTEYIKEG-AVCINFACT 129 (171)
T ss_dssp CSEEEECCCCTT-CCBCTTTSCTT-EEEEECSSS
T ss_pred CCEEEEccCCCc-cccChhhcccC-ceEeecccc
Confidence 899999999877 43344578886 888888864
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=88.74 E-value=0.26 Score=36.39 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=27.5
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
++|+|+|+.|+.++..|...|. +|..+++.
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~ 33 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNA-KVALVEKS 33 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 6888999999999999999999 99999864
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.66 E-value=0.25 Score=38.94 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=25.8
Q ss_pred EEEEEcCChHHHHHHHHHHH------cCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKA------AGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~------~g~~~v~~~~~~~ 105 (255)
-|+|.|+|+.|++++..+.. .|. +|+++++..
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~ 71 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA 71 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCC
Confidence 47888999999987765554 789 999999754
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.44 E-value=2.2 Score=30.00 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=47.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcch----------HHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCcc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK----------FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~----------~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
++++.|.+.+|..+++.+...|. +|.++.+.+++ .+++++.+.......+-+++.+.+.+.+. .+|
T Consensus 2 kiv~~~~~~~g~~~l~~L~~~g~-~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~---~~D 77 (203)
T d2blna2 2 KTVVFAYHDMGCLGIEALLAAGY-EISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQL---SPD 77 (203)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTC-EEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHT---CCS
T ss_pred eEEEEecCHHHHHHHHHHHHCCC-CEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhh---ccc
Confidence 57778888899999999888898 88777654432 24455666553321111125566666654 689
Q ss_pred EEEecCCc
Q 025257 143 YSFECIGN 150 (255)
Q Consensus 143 ~v~d~~g~ 150 (255)
+++-+...
T Consensus 78 lii~~g~~ 85 (203)
T d2blna2 78 VIFSFYYR 85 (203)
T ss_dssp EEEEESCC
T ss_pred ceeeeecc
Confidence 99866544
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=88.28 E-value=0.62 Score=32.03 Aligned_cols=74 Identities=19% Similarity=0.384 Sum_probs=44.7
Q ss_pred CCCEEEEEcCChHHHHH---HHHHHH--cCCCeEEEEcCCcchHHHH--------HhcCCc-EEeCCCCCCchHHHHHHh
Q 025257 70 PGSIVAVFGLGTVGLAV---AEGAKA--AGASRVIGIDIDPKKFDRA--------KNFGVT-EFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a---~~l~~~--~g~~~v~~~~~~~~~~~~~--------~~~g~~-~vi~~~~~~~~~~~~i~~ 135 (255)
|+-+|.|.|+|.+|... ..+++. ....+++.++.++++.+.. ..++.+ .+... .+..+.+.
T Consensus 1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~----td~~eaL~- 75 (171)
T d1obba1 1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT----MNLDDVII- 75 (171)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE----SCHHHHHT-
T ss_pred CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe----CChhhccc-
Confidence 45689999999888542 233332 2123899999998876542 223432 22221 33444443
Q ss_pred hcCCCccEEEecCCcHH
Q 025257 136 LTDGGVDYSFECIGNVS 152 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~~~ 152 (255)
+.|+|+.+.+...
T Consensus 76 ----dad~Vv~~~~~g~ 88 (171)
T d1obba1 76 ----DADFVINTAMVGG 88 (171)
T ss_dssp ----TCSEEEECCCTTH
T ss_pred ----CCCeEeeeccccc
Confidence 6999999887644
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=87.80 E-value=0.55 Score=31.37 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=31.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCCcchH
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKF 108 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~ 108 (255)
...+|.|.|+|.+|...+..+...| +.+++.++.++++.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~ 43 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT 43 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence 3468999999999999888888777 34899999877543
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=87.78 E-value=0.79 Score=32.92 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=35.1
Q ss_pred HHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 61 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 61 ~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
++....+--.+.+++++|+|..|...++++...+.++++.+++.
T Consensus 16 a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~ 59 (222)
T d1vl6a1 16 ALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 59 (222)
T ss_dssp HHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred HHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence 34334444567899999999999999999998998899999864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=87.73 E-value=0.93 Score=31.38 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=41.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc--EEeCCCCCCchHHHHHHhhcCCCccE
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT--EFVNPKDHDKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~i~~~~~~~~d~ 143 (255)
.+.+||=.++|. |.+.++ |..+|+.+|+.++.+++..+.+++ ++.. .++. .+..+.+.. .+..||+
T Consensus 43 ~~~~vLDlfaGs-G~~gie-alsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~-----~d~~~~l~~-~~~~fDl 114 (183)
T d2fpoa1 43 VDAQCLDCFAGS-GALGLE-ALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVN-----SNAMSFLAQ-KGTPHNI 114 (183)
T ss_dssp TTCEEEETTCTT-CHHHHH-HHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEEC-----SCHHHHHSS-CCCCEEE
T ss_pred chhhhhhhhccc-cceeee-EEecCcceeEEEEEeechhhHHHHHHhhccccceeeee-----ecccccccc-cccccCE
Confidence 556777775432 334444 345888789999999988877743 4442 2333 233333433 2238999
Q ss_pred EE-ec
Q 025257 144 SF-EC 147 (255)
Q Consensus 144 v~-d~ 147 (255)
|| |.
T Consensus 115 If~DP 119 (183)
T d2fpoa1 115 VFVDP 119 (183)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98 54
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=87.70 E-value=0.33 Score=35.82 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=28.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
-++|+|+|+.|+.++..+..+|. +|.++...+
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~G~-kv~vve~~~ 75 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWP 75 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence 48888999999999999999999 999998654
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=87.63 E-value=0.42 Score=34.67 Aligned_cols=32 Identities=25% Similarity=0.183 Sum_probs=28.3
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 106 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~ 106 (255)
|+|.|+|+-|+-|+..+...|. ++..++.+.+
T Consensus 5 VIVIGgG~AG~eAA~~aAR~G~-ktllit~~~~ 36 (230)
T d2cula1 5 VLIVGAGFSGAETAFWLAQKGV-RVGLLTQSLD 36 (230)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESCGG
T ss_pred EEEECcCHHHHHHHHHHHHCCC-cEEEEEeccc
Confidence 7888999999999999999999 8888886643
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Probab=87.58 E-value=4.2 Score=30.14 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=40.1
Q ss_pred hhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc---CCcchHHHHHhcCCcEE
Q 025257 64 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID---IDPKKFDRAKNFGVTEF 119 (255)
Q Consensus 64 ~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~---~~~~~~~~~~~~g~~~v 119 (255)
+...++++..|+..++|.-|.+++..++..|. +.+++. .++.+.+.++.+|+..+
T Consensus 54 ~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~-~~~i~~p~~~~~~k~~~~~~~ga~v~ 111 (302)
T d1fcja_ 54 KRGVLKPGVELVEPTNGNTGIALAYVAAARGY-KLTLTMPETMSIERRKLLKALGANLV 111 (302)
T ss_dssp HHTCCCTTCEEEEECSSHHHHHHHHHHHHHTC-CEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred HcCCCCCCceEEEeccccchhHHHHHHHHhcc-CCceEEeecCcHHHHHHHHHhccceE
Confidence 55667777776666779999999999999998 544443 34466777788887643
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.43 E-value=0.81 Score=30.53 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=43.4
Q ss_pred EEEEEcC-ChHHHHHHHH-HHHc--CCCeEEEEcCCcchHHHHHhcCC-cEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 73 IVAVFGL-GTVGLAVAEG-AKAA--GASRVIGIDIDPKKFDRAKNFGV-TEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l-~~~~--g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
+|.|.|| |-+|+-.+++ +.+. -..++....++..........+- ..+.+.. +. +.+. ++|++|-|
T Consensus 3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~----~~-~~~~-----~~DivF~a 72 (146)
T d1t4ba1 3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAF----DL-EALK-----ALDIIVTC 72 (146)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETT----CH-HHHH-----TCSEEEEC
T ss_pred EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeeccc----ch-hhhh-----cCcEEEEe
Confidence 6889998 9999999975 4443 22266666654332211111111 1111111 11 1111 69999999
Q ss_pred CCcHHHHHHHHHHhcc
Q 025257 148 IGNVSVMRAALECCHK 163 (255)
Q Consensus 148 ~g~~~~~~~~~~~l~~ 163 (255)
++...+.+..-.....
T Consensus 73 ~~~~~s~~~~~~~~~~ 88 (146)
T d1t4ba1 73 QGGDYTNEIYPKLRES 88 (146)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred cCchHHHHhhHHHHhc
Confidence 9988744444444454
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=87.42 E-value=0.76 Score=35.73 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=25.1
Q ss_pred CCEEEEEcC-ChHHHHHH-HHHHHcCCCeEEEEc
Q 025257 71 GSIVAVFGL-GTVGLAVA-EGAKAAGASRVIGID 102 (255)
Q Consensus 71 ~~~vlI~G~-g~vG~~a~-~l~~~~g~~~v~~~~ 102 (255)
+-+|||+|+ |=+|..++ +|++..|. +|++++
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~-~V~~~D 34 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVD 34 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 457999997 99997766 56667888 999986
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.36 E-value=0.37 Score=31.78 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=26.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHH----HHcCCCeEEEEcCCc
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGA----KAAGASRVIGIDIDP 105 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~----~~~g~~~v~~~~~~~ 105 (255)
++.++++|.|+|.+|.-++..+ +..|. +|+.+.+++
T Consensus 35 ~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~ 74 (137)
T d1m6ia2 35 REVKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEK 74 (137)
T ss_dssp HHCSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred hcCCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccc
Confidence 4568999999999886544333 46798 999988653
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=87.34 E-value=1 Score=31.88 Aligned_cols=93 Identities=20% Similarity=0.244 Sum_probs=60.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHH----HhcCCcE--EeCCCCCCchHHHHHHhhcCCCccEE
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRA----KNFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~----~~~g~~~--vi~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
..||-+|+|. |..++.+|+.. .. .+++++.++.....+ ++.+.+. ++.... .++. ..+..+.+|.|
T Consensus 33 plvLdIGcG~-G~~~~~lA~~~p~~-~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da--~~l~---~~~~~~~~~~i 105 (204)
T d1yzha1 33 PIHVEVGSGK-GAFVSGMAKQNPDI-NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG--SDLT---DYFEDGEIDRL 105 (204)
T ss_dssp CEEEEESCTT-SHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS--SCGG---GTSCTTCCSEE
T ss_pred CeEEEEeccC-CHHHHHHHHHCCCC-ceEEEeccHHHHHHHHHhhhhhccccceeeecCH--HHHh---hhccCCceehh
Confidence 4677779875 88999999987 55 999999988766655 3455443 232222 2221 12222368888
Q ss_pred EecCCc--------------HHHHHHHHHHhccCCceEEEEc
Q 025257 145 FECIGN--------------VSVMRAALECCHKGWGTSVIVG 172 (255)
Q Consensus 145 ~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g 172 (255)
+-.... +..++.+.+.|++| |.+....
T Consensus 106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg-G~l~i~T 146 (204)
T d1yzha1 106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN-GEIHFKT 146 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT-CEEEEEE
T ss_pred cccccccccchhhhhhhhhHHHHHHHHHHhCCCC-cEEEEEE
Confidence 654432 34478889999997 9987653
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.32 E-value=2.5 Score=27.26 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=62.6
Q ss_pred cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEE
Q 025257 66 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 144 (255)
Q Consensus 66 ~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v 144 (255)
.-+.++.+|+|.|- |.-|....+.++.+|- ++++-+...+.-+.. .|. .|+| ...+.+++. ++|.-
T Consensus 10 Ili~k~TrVivQGiTG~~G~~ht~~m~~YGT-~iVaGVtPgKgG~~~--~gi-PVf~------tV~eA~~~~---~~daS 76 (130)
T d1euca1 10 LYVDKNTKVICQGFTGKQGTFHSQQALEYGT-NLVGGTTPGKGGKTH--LGL-PVFN------TVKEAKEQT---GATAS 76 (130)
T ss_dssp GCCCTTCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECTTCTTCEE--TTE-EEES------SHHHHHHHH---CCCEE
T ss_pred EEEcCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEeeccCCCCccc--cCc-cchh------hHHHHHHhc---CCcEE
Confidence 34678889999997 9999999999999998 998877543332211 222 2443 233444432 47777
Q ss_pred EecCCcHHHHHHHHHHhccCCceEEEE
Q 025257 145 FECIGNVSVMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 145 ~d~~g~~~~~~~~~~~l~~~~G~~v~~ 171 (255)
+-.+..+...+.++..+..+ =.++.+
T Consensus 77 vIfVPp~~a~dAi~EAi~ag-I~liV~ 102 (130)
T d1euca1 77 VIYVPPPFAAAAINEAIDAE-VPLVVC 102 (130)
T ss_dssp EECCCHHHHHHHHHHHHHTT-CSEEEE
T ss_pred EEecCHHHHHHHHHHHHhCC-CCEEEE
Confidence 77788777778888888875 555444
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.23 E-value=0.43 Score=34.87 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHH-HcCCCeEEEEcCC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDID 104 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~-~~g~~~v~~~~~~ 104 (255)
-+|.+|+|.|.|.||..+++++. ..|+ +|+++..+
T Consensus 30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~-kvv~vsD~ 65 (239)
T d1gtma1 30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVSDS 65 (239)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEECS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhcCc-ceeecccc
Confidence 47899999999999999999875 5688 88888654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.14 E-value=0.89 Score=32.07 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025257 67 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113 (255)
Q Consensus 67 ~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~ 113 (255)
.-..|++||=.|+|. |..++.++ ..|+.+|++++.+++..+.+++
T Consensus 43 ~dl~g~~vLDlg~Gt-G~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~ 87 (201)
T d1wy7a1 43 GDIEGKVVADLGAGT-GVLSYGAL-LLGAKEVICVEVDKEAVDVLIE 87 (201)
T ss_dssp TSSTTCEEEEETCTT-CHHHHHHH-HTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEECcCcc-hHHHHHHH-HcCCCEEEEEcCcHHHHHHHHH
Confidence 334678999998753 44444443 5786699999999988887753
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=87.06 E-value=1.1 Score=32.45 Aligned_cols=94 Identities=7% Similarity=-0.010 Sum_probs=56.1
Q ss_pred CEEEEEcCCh----HHHHHHHHHHHc--CCCeEEEE-cCCcchHHH-HHhcCCcEEeCCCCCCchHHHHHHhhcCCCccE
Q 025257 72 SIVAVFGLGT----VGLAVAEGAKAA--GASRVIGI-DIDPKKFDR-AKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDY 143 (255)
Q Consensus 72 ~~vlI~G~g~----vG~~a~~l~~~~--g~~~v~~~-~~~~~~~~~-~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~ 143 (255)
=+|.|.|.|. ++...+...+.. ++ +++++ ++++++.+. +++++......+ .++.+.+.+ ..+|+
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~---~~iD~ 88 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSLQTIEQLQLKHATGF----DSLESFAQY---KDIDM 88 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHHHHHHHTTCTTCEEE----SCHHHHHHC---TTCSE
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHHHHHHhcccccceee----cchhhcccc---cccce
Confidence 3788999865 334344444443 46 78865 455555544 466765322111 234443332 27999
Q ss_pred EEecCCcHHHHHHHHHHhccCC----ceEEEEcc
Q 025257 144 SFECIGNVSVMRAALECCHKGW----GTSVIVGV 173 (255)
Q Consensus 144 v~d~~g~~~~~~~~~~~l~~~~----G~~v~~g~ 173 (255)
|+.|+......+.+..++..|. ++-+.+.-
T Consensus 89 V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EK 122 (237)
T d2nvwa1 89 IVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEW 122 (237)
T ss_dssp EEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEES
T ss_pred eeccCCCcchhhHHHHHHHhcccccCCceEEEec
Confidence 9999988777888888887630 24566654
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=86.87 E-value=0.71 Score=30.59 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=30.1
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 109 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~ 109 (255)
.+|.|.|+|.+|..++.++...+..+++.++..+++.+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~ 39 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQ 39 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccch
Confidence 47888999999999887777777658999998776533
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=86.70 E-value=0.81 Score=31.28 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=44.0
Q ss_pred CCCEEEEEcCChHHH--HHHHHHHHcC---CCeEEEEcCCcchHHHH--------HhcCCc-EEeCCCCCCchHHHHHHh
Q 025257 70 PGSIVAVFGLGTVGL--AVAEGAKAAG---ASRVIGIDIDPKKFDRA--------KNFGVT-EFVNPKDHDKPIQQVLVD 135 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~--~a~~l~~~~g---~~~v~~~~~~~~~~~~~--------~~~g~~-~vi~~~~~~~~~~~~i~~ 135 (255)
+.-+|.|.|+|++|. +...+++..- ..+++.++.++++.+.. ...+.+ .+.-. .+..+.+.
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~eal~- 76 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT----TDPEEAFT- 76 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE----SCHHHHHS-
T ss_pred CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec----CChhhccC-
Confidence 445788999886663 3444444332 12899999998876532 123433 22222 33444443
Q ss_pred hcCCCccEEEecCCcHH
Q 025257 136 LTDGGVDYSFECIGNVS 152 (255)
Q Consensus 136 ~~~~~~d~v~d~~g~~~ 152 (255)
+.|+|+.+.|.+.
T Consensus 77 ----~AD~Vvitag~~~ 89 (167)
T d1u8xx1 77 ----DVDFVMAHIRVGK 89 (167)
T ss_dssp ----SCSEEEECCCTTH
T ss_pred ----CCCEEEECCCcCC
Confidence 6999999998633
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=86.69 E-value=0.82 Score=31.70 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=42.1
Q ss_pred CCCEEEEE--cCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hcCCc---EEeCCCCCCchHHHHHHhhcCC-
Q 025257 70 PGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT---EFVNPKDHDKPIQQVLVDLTDG- 139 (255)
Q Consensus 70 ~~~~vlI~--G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~vi~~~~~~~~~~~~i~~~~~~- 139 (255)
.+.+||=+ |.|.+|+-|+ .+|+..|+.++.+.+..+.++ .++.. ..+.. .+..+.++.....
T Consensus 43 ~~~~vLDlFaGsG~~glEal----SRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~----~d~~~~l~~~~~~~ 114 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEAL----SRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVIN----QSSLDFLKQPQNQP 114 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHH----HTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEEC----SCHHHHTTSCCSSC
T ss_pred ccceEeecccCccceeeeee----eecceeeEEeecccchhhhHhhHHhhhccccccccccc----ccccccccccccCC
Confidence 45677766 3477776543 789989999999988777664 35532 22211 3333444433334
Q ss_pred CccEEE
Q 025257 140 GVDYSF 145 (255)
Q Consensus 140 ~~d~v~ 145 (255)
.||+||
T Consensus 115 ~fDlIF 120 (183)
T d2ifta1 115 HFDVVF 120 (183)
T ss_dssp CEEEEE
T ss_pred cccEEE
Confidence 799998
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=86.69 E-value=0.77 Score=33.35 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=40.0
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 113 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~ 113 (255)
+.+...++++++||-.|+|. |.+...+++ .+. +|++++.+++-.+.+++
T Consensus 13 iv~~~~~~~~d~VlEIGpG~-G~LT~~Ll~-~~~-~v~avE~D~~l~~~l~~ 61 (235)
T d1qama_ 13 IMTNIRLNEHDNIFEIGSGK-GHFTLELVQ-RCN-FVTAIEIDHKLCKTTEN 61 (235)
T ss_dssp HHTTCCCCTTCEEEEECCTT-SHHHHHHHH-HSS-EEEEECSCHHHHHHHHH
T ss_pred HHHhcCCCCCCeEEEECCCc-hHHHHHHHh-CcC-ceEEEeeccchHHHHHH
Confidence 55778899999999999874 777777776 467 99999998887777765
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=86.65 E-value=2.6 Score=28.59 Aligned_cols=97 Identities=23% Similarity=0.252 Sum_probs=55.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCCcc--hHHHHHhc----C---Cc-------EEeCCCC----CCchHHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPK--KFDRAKNF----G---VT-------EFVNPKD----HDKPIQQ 131 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~~~~--~~~~~~~~----g---~~-------~vi~~~~----~~~~~~~ 131 (255)
+|.|.|-|-+|.++.+.+.... . +++++-.... ....+-+. | .+ .+++-+. ...+. +
T Consensus 3 kigINGFGRIGR~v~R~~~~~~~i-~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p-~ 80 (166)
T d1gado1 3 KVGINGFGRIGRIVFRAAQKRSDI-EIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP-A 80 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG-G
T ss_pred EEEEECCcHHHHHHHHHHhhCCCe-EEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCCh-H
Confidence 5788899999999998887663 5 7777754332 22233221 1 11 1111100 00111 1
Q ss_pred HHHhhcCC-CccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 132 VLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 132 ~i~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
++. | +. ++|+|+||+|.-...+.+..++..+ .+=|.+..+
T Consensus 81 ~i~-W-~~~gvDiViEcTG~f~t~~~~~~hl~~g-akkViiSaP 121 (166)
T d1gado1 81 NLK-W-DEVGVDVVAEATGLFLTDETARKHITAG-AKKVVMTGP 121 (166)
T ss_dssp GGC-H-HHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSC
T ss_pred HCC-c-cccCCCEEEEccccccCHHHHHHHhcCC-CceEEeecc
Confidence 111 1 12 7999999999766567788888885 655556543
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=86.46 E-value=0.13 Score=35.85 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=52.0
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCCc------chHHHHHh-c-CC--cEEeCCCCCCchHHHHHHhhcCCC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDP------KKFDRAKN-F-GV--TEFVNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~-g~~~v~~~~~~~------~~~~~~~~-~-g~--~~vi~~~~~~~~~~~~i~~~~~~~ 140 (255)
+|.|.|+ |-+|+-+++++..+ .. ++..+..+. ++...... + +. .......+ . .....+
T Consensus 3 kVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~ 72 (179)
T d2g17a1 3 NTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSD--V-------RDFSAD 72 (179)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESC--G-------GGTCTT
T ss_pred EEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccchh--h-------hhhhcc
Confidence 6889998 99999999999987 55 665543211 22222211 1 11 11111110 0 011126
Q ss_pred ccEEEecCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 141 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
+|++|-|.+...+.+..-..+..+ -+++..+.
T Consensus 73 ~dvvf~alp~~~s~~~~~~~~~~~-~~vIDlSa 104 (179)
T d2g17a1 73 VDVVFLATAHEVSHDLAPQFLQAG-CVVFDLSG 104 (179)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTT-CEEEECSS
T ss_pred cceeeccccchhHHHHhhhhhhcC-ceeecccc
Confidence 999999999887556666666664 67776654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=86.38 E-value=0.84 Score=30.96 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchH
Q 025257 68 VEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKF 108 (255)
Q Consensus 68 ~~~~~~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~ 108 (255)
..+..+|.|.|+|.+|..++..+...|. .+++.++.++++.
T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a 58 (160)
T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL 58 (160)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence 3456799999999999999999998884 4788888876543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=86.22 E-value=0.45 Score=33.12 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=53.6
Q ss_pred CCCCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCc---EEeCCCCCCchHHHHHHhhc-
Q 025257 68 VEPGSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDLT- 137 (255)
Q Consensus 68 ~~~~~~vlI~G~--g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~i~~~~- 137 (255)
...|.+||=..+ |.+|+. |..+|+.+|+.++.+++..+.+++ ++.. .++. .+..+.+++..
T Consensus 39 ~~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~-----~D~~~~l~~~~~ 109 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRK-----MDANRALEQFYE 109 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE-----SCHHHHHHHHHH
T ss_pred hcCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhccccccccc-----ccchhhhhhhcc
Confidence 457888888744 566653 234888789999999888777743 4432 2332 33334444432
Q ss_pred CC-CccEEE-ecC-Cc---HHHHHHHHH--HhccCCceEE
Q 025257 138 DG-GVDYSF-ECI-GN---VSVMRAALE--CCHKGWGTSV 169 (255)
Q Consensus 138 ~~-~~d~v~-d~~-g~---~~~~~~~~~--~l~~~~G~~v 169 (255)
.+ .||+|| |.. +. ...++.+.+ .++++ |.++
T Consensus 110 ~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~-giIi 148 (182)
T d2fhpa1 110 EKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNE-AVIV 148 (182)
T ss_dssp TTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEE-EEEE
T ss_pred cCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCC-EEEE
Confidence 23 799998 432 11 222444443 46775 6554
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.80 E-value=1.7 Score=35.63 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=29.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
.+|+|.|+|++|.-++.-+...|.++++.++.+.
T Consensus 26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~ 59 (529)
T d1yova1 26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ 59 (529)
T ss_dssp CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 6899999999999999888889998888887543
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=85.76 E-value=0.82 Score=30.47 Aligned_cols=36 Identities=42% Similarity=0.597 Sum_probs=29.0
Q ss_pred CEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCCcch
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKK 107 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g-~~~v~~~~~~~~~ 107 (255)
++|.|.|+|.+|..++..+...| +.+++.++.++++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~ 38 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAK 38 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccch
Confidence 57889999999999888777777 3478888887765
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=85.49 E-value=3.6 Score=31.47 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCChHHHHHHH-HHHHcCCCeEEEEcCCcchHHHH-Hhc----CCcEEeCCCCCCchHHHHHHhhcCCCcc
Q 025257 69 EPGSIVAVFGLGTVGLAVAE-GAKAAGASRVIGIDIDPKKFDRA-KNF----GVTEFVNPKDHDKPIQQVLVDLTDGGVD 142 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~-l~~~~g~~~v~~~~~~~~~~~~~-~~~----g~~~vi~~~~~~~~~~~~i~~~~~~~~d 142 (255)
+...++.|+|+|..+..-++ ++..++.++|.+.++++++.+.+ +++ |.....- .+..+.++ +.|
T Consensus 126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~-----~s~~eav~-----~AD 195 (340)
T d1x7da_ 126 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRA-----SSVAEAVK-----GVD 195 (340)
T ss_dssp TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEEC-----SSHHHHHT-----TCS
T ss_pred cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceec-----CCHHHHHh-----cCC
Confidence 44578899999988877665 44567888999999998876654 332 3332221 44555554 589
Q ss_pred EEEecCCcHH---HHHHHHHHhccCCceEEEEccCC
Q 025257 143 YSFECIGNVS---VMRAALECCHKGWGTSVIVGVAA 175 (255)
Q Consensus 143 ~v~d~~g~~~---~~~~~~~~l~~~~G~~v~~g~~~ 175 (255)
+|+-|+..+. .+. ..+++++ -++..+|...
T Consensus 196 Ii~t~Tas~s~~Pv~~--~~~l~pG-~hI~aiGs~~ 228 (340)
T d1x7da_ 196 IITTVTADKAYATIIT--PDMLEPG-MHLNAVGGDC 228 (340)
T ss_dssp EEEECCCCSSEEEEEC--GGGCCTT-CEEEECSCCB
T ss_pred ceeeccccCCCCcccc--hhhcCCC-CEEeecccch
Confidence 9987765421 122 2478886 7888888754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=85.22 E-value=0.71 Score=32.54 Aligned_cols=73 Identities=25% Similarity=0.392 Sum_probs=46.2
Q ss_pred HHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCC-cEEeCCCCCCchHHHHHHhhcCCC
Q 025257 62 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV-TEFVNPKDHDKPIQQVLVDLTDGG 140 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~-~~vi~~~~~~~~~~~~i~~~~~~~ 140 (255)
+.....+ .|++||-.|+|. |..++. +..+|+.+|++++.+++..+.+++.-. -.++..+ + .+. .+.
T Consensus 41 ~~~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D-----~----~~l-~~~ 107 (197)
T d1ne2a_ 41 IYNDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD-----V----SEI-SGK 107 (197)
T ss_dssp HHHHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC-----G----GGC-CCC
T ss_pred HHHcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEEe-----h----hhc-CCc
Confidence 3344555 589999999864 555444 445787689999999998888866332 2233211 1 122 247
Q ss_pred ccEEEec
Q 025257 141 VDYSFEC 147 (255)
Q Consensus 141 ~d~v~d~ 147 (255)
||+|+-.
T Consensus 108 fD~Vi~N 114 (197)
T d1ne2a_ 108 YDTWIMN 114 (197)
T ss_dssp EEEEEEC
T ss_pred ceEEEeC
Confidence 9999854
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Probab=85.03 E-value=3.4 Score=30.67 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=33.3
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEc---CCcchHHHHHhcCCcEEe
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGID---IDPKKFDRAKNFGVTEFV 120 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~---~~~~~~~~~~~~g~~~vi 120 (255)
|+...+|..|.+++..++..|. +.+++. .++.|.+.++.+|++.++
T Consensus 58 vv~~SsGN~g~a~A~~a~~~g~-~~~i~~p~~~~~~k~~~~~~~GA~V~~ 106 (293)
T d1o58a_ 58 IVEPTSGNMGIAIAMIGAKRGH-RVILTMPETMSVERRKVLKMLGAELVL 106 (293)
T ss_dssp EEEECSSHHHHHHHHHHHHHTC-CEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred eEEecCcchhhHHHHhhhhccc-eeEeeccccccHHHeeccccCCcEEEE
Confidence 4434569999999999999998 444442 345678888889987543
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=84.93 E-value=1.1 Score=29.96 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=46.8
Q ss_pred EEEEEcC-ChHHHHHHHHHHH-c---CCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEec
Q 025257 73 IVAVFGL-GTVGLAVAEGAKA-A---GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 147 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~-~---g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~ 147 (255)
+|.|.|+ |-+|+-.++++.. . .. .+.....+...-+.. .++.+....... .+. +.+ ..+|++|-|
T Consensus 2 KVaIiGATGyvG~eLi~lLl~~~~~p~~-~i~~~ss~~~~gk~~-~~~~~~~~~~~~--~~~-~~~-----~~~DvvF~a 71 (147)
T d1mb4a1 2 RVGLVGWRGMVGSVLMQRMVEERDFDLI-EPVFFSTSQIGVPAP-NFGKDAGMLHDA--FDI-ESL-----KQLDAVITC 71 (147)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTGGGGS-EEEEEESSCCSSBCC-CSSSCCCBCEET--TCH-HHH-----TTCSEEEEC
T ss_pred EEEEECCccHHHHHHHHHHHhcCCCCce-EEEEecccccccccc-ccCCcceeeecc--cch-hhh-----ccccEEEEe
Confidence 5889998 9999999986543 2 24 666555432211111 111111111000 111 111 268999999
Q ss_pred CCcHHHHHHHHHHhccCCce--EEEEc
Q 025257 148 IGNVSVMRAALECCHKGWGT--SVIVG 172 (255)
Q Consensus 148 ~g~~~~~~~~~~~l~~~~G~--~v~~g 172 (255)
.+...+.+..-+.+..+ -+ ++..+
T Consensus 72 lp~~~s~~~~~~l~~~g-~~~~VIDlS 97 (147)
T d1mb4a1 72 QGGSYTEKVYPALRQAG-WKGYWIDAA 97 (147)
T ss_dssp SCHHHHHHHHHHHHHTT-CCSEEEESS
T ss_pred cCchHHHHHhHHHHHcC-CceEEEeCC
Confidence 99887555555555553 33 55553
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=84.84 E-value=1.2 Score=30.38 Aligned_cols=98 Identities=23% Similarity=0.266 Sum_probs=54.4
Q ss_pred EEEEEcCChHHHHHHHHHHHc---CCCeEEEEcC--CcchHHHHHhc----C---Cc-------EEeCCCC----CCchH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAA---GASRVIGIDI--DPKKFDRAKNF----G---VT-------EFVNPKD----HDKPI 129 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~---g~~~v~~~~~--~~~~~~~~~~~----g---~~-------~vi~~~~----~~~~~ 129 (255)
+|.|.|-|-+|..+.+.+... .. +|+++-. +.+....+-+. | .+ .+++-+. ...+.
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i-~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p 80 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKNPDI-EVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCTTC-EEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred EEEEECCChHHHHHHHHHHhccCCCE-EEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence 688999999999999877643 35 7777643 23344444321 1 11 0111000 00111
Q ss_pred HHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 130 QQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 130 ~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++. |..-++|+|+||+|.-...+.+...+..+ -+=|.+..+
T Consensus 81 -~~i~-W~~~gvD~ViEcTG~f~t~~~~~~hl~~G-akkViiSAP 122 (169)
T d1hdgo1 81 -SKLP-WKDLGVDFVIESTGVFRNREKAELHLQAG-AKKVIITAP 122 (169)
T ss_dssp -GGSC-HHHHTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSC
T ss_pred -hhCC-ccccCCCEEEEecceeccccchhhhccCC-CceEEEecc
Confidence 1111 11017999999999855467788888885 544555443
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.73 E-value=0.64 Score=33.46 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=28.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHH--------------------cCCCeEEEEcCCc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKA--------------------AGASRVIGIDIDP 105 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~--------------------~g~~~v~~~~~~~ 105 (255)
++++|+|+|+|.+++=.+..|.. .|+++|.++.+..
T Consensus 38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg 93 (225)
T d1cjca1 38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 93 (225)
T ss_dssp TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence 58999999999999998888876 4666777776543
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=84.67 E-value=0.38 Score=30.20 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 69 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 69 ~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
=+|++|+|.|+|..|.-.+.-+...+. +++...++
T Consensus 30 f~gK~VlVVG~g~Sa~dia~~l~~~ak-~v~~~~~r 64 (107)
T d2gv8a2 30 FVGESVLVVGGASSANDLVRHLTPVAK-HPIYQSLL 64 (107)
T ss_dssp GTTCCEEEECSSHHHHHHHHHHTTTSC-SSEEEECT
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcC-EEEEEEec
Confidence 368999999998877765555544555 65555443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=84.54 E-value=1.9 Score=28.48 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=47.1
Q ss_pred HHhhcCCCCCCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhcCCcEEeCCC
Q 025257 62 VWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNFGVTEFVNPK 123 (255)
Q Consensus 62 l~~~~~~~~~~~vlI~G~-g~vG~~a~~l~~~~g-~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 123 (255)
..+.+++..-+.+++.-. -..=..++..++.++ ..++++...+++..+.+++.|++.++++.
T Consensus 63 ~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~ 126 (153)
T d1id1a_ 63 VLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQ 126 (153)
T ss_dssp HHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHH
T ss_pred HHHHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHCCCCEEECHH
Confidence 347778888777777643 445567777888764 33899999999999999999999998754
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=84.41 E-value=4.5 Score=27.53 Aligned_cols=99 Identities=24% Similarity=0.320 Sum_probs=53.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCC---eEEEEcC--CcchHHHHHhc-------CCc-------EEeCCCC----CCchH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGAS---RVIGIDI--DPKKFDRAKNF-------GVT-------EFVNPKD----HDKPI 129 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~---~v~~~~~--~~~~~~~~~~~-------g~~-------~vi~~~~----~~~~~ 129 (255)
+|.|.|-|-+|.++.+.+...+.. .|+++-. +.+....+-+. ... .+++-+. ...+.
T Consensus 3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p 82 (173)
T d1obfo1 3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRNP 82 (173)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSCG
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCCH
Confidence 578999999999999877654321 5555543 22333333221 111 0111100 00111
Q ss_pred HHHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 130 QQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 130 ~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++. |..-++|+|+||+|.-...+.+.+.|..+ .+-|.+..+
T Consensus 83 -~~i~-W~~~gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP 124 (173)
T d1obfo1 83 -AQLP-WGALKVDVVLECTGFFTTKEKAGAHIKGG-AKKVIISAP 124 (173)
T ss_dssp -GGSC-TTTTTCSEEEECSSSCCSHHHHHHHHHHT-CSEEEESSC
T ss_pred -HHCc-ccccccceEEEecccccCHHHHHHHhccC-CcceEEecC
Confidence 1111 11128999999999755467788888886 665666543
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.36 E-value=3.6 Score=27.81 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=56.0
Q ss_pred EEEEEcCChHHHHHHHHHHHc-CCCeEEEEcC---CcchHHHHHhc----C---Cc-------EEeCCCC----CCchHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAA-GASRVIGIDI---DPKKFDRAKNF----G---VT-------EFVNPKD----HDKPIQ 130 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~---~~~~~~~~~~~----g---~~-------~vi~~~~----~~~~~~ 130 (255)
+|.|.|-|-+|.++.+.+... .. +++++-. +.+....+-+. | .. .+++-+. ...+.
T Consensus 2 kigINGfGRIGR~v~R~~~~~~~~-~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p- 79 (166)
T d2b4ro1 2 KLGINGFGRIGRLVFRAAFGRKDI-EVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDP- 79 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSG-
T ss_pred eEEEECCCHHHHHHHHHHhhCCCc-EEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCCh-
Confidence 578999999999999887755 45 7777642 23445555332 1 11 0111100 00111
Q ss_pred HHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 131 QVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 131 ~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++. |...++|+|+||+|.-...+.+...+..+ .+=|.+..+
T Consensus 80 ~~i~-W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP 121 (166)
T d2b4ro1 80 SQIP-WGKCQVDVVCESTGVFLTKELASSHLKGG-AKKVIMSAP 121 (166)
T ss_dssp GGCC-HHHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSC
T ss_pred HHcc-ccccCCCEEEEecccccchhhhhhhhccC-CCEEEEecc
Confidence 1111 11117999999999766567788888885 655555443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=84.30 E-value=1.1 Score=29.49 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=29.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFD 109 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~~ 109 (255)
+|.|.|+|.+|...+..+...+. .+++.++.++++.+
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~ 39 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ 39 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence 57888999999998888887773 48999998876644
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.98 E-value=0.55 Score=35.51 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=27.2
Q ss_pred CCEEEEEcCChHHHHHHHHHHH--cCCCeEEEEcCCc
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKA--AGASRVIGIDIDP 105 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~--~g~~~v~~~~~~~ 105 (255)
+..|+|.|+|+.|+.++..+.. .|. +|.++++++
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~-~~~~~~~~~ 85 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSV 85 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEEcCC
Confidence 3459999999999998876654 488 999998764
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=83.82 E-value=1.1 Score=31.80 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=58.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHH----hcCCc--EEeCCCCCCchHHHHHHhhcCC-Cc
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAK----NFGVT--EFVNPKDHDKPIQQVLVDLTDG-GV 141 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~----~~g~~--~vi~~~~~~~~~~~~i~~~~~~-~~ 141 (255)
++++++=.|.|+ |.=.+-+|-.. .. +++.++++.+|..+++ ++|.+ .+++.+. ++ .... .|
T Consensus 65 ~~~~ilDiGsGa-G~PGi~laI~~p~~-~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~--E~-------~~~~~~f 133 (207)
T d1jsxa_ 65 QGERFIDVGTGP-GLPGIPLSIVRPEA-HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV--EE-------FPSEPPF 133 (207)
T ss_dssp CSSEEEEETCTT-TTTHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT--TT-------SCCCSCE
T ss_pred cCCceeeeeccC-Cceeeehhhhcccc-eEEEEecchHHHHHHHHHHHHcCCcceeeeccch--hh-------hcccccc
Confidence 456888787543 43344444444 45 9999999999998884 46754 4454443 22 2223 69
Q ss_pred cEEE-ecCCcHH-HHHHHHHHhccCCceEEEEcc
Q 025257 142 DYSF-ECIGNVS-VMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 142 d~v~-d~~g~~~-~~~~~~~~l~~~~G~~v~~g~ 173 (255)
|+|. -+++... .++.+...++++ |+++.+-.
T Consensus 134 D~V~sRA~~~~~~ll~~~~~~l~~~-g~~~~~KG 166 (207)
T d1jsxa_ 134 DGVISRAFASLNDMVSWCHHLPGEQ-GRFYALKG 166 (207)
T ss_dssp EEEECSCSSSHHHHHHHHTTSEEEE-EEEEEEES
T ss_pred ceehhhhhcCHHHHHHHHHHhcCCC-cEEEEECC
Confidence 9888 4555433 345666678886 98888743
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=83.77 E-value=1.2 Score=28.79 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=43.7
Q ss_pred hhcCCCCCCEEEEE-cCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCC
Q 025257 64 NTAKVEPGSIVAVF-GLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 123 (255)
Q Consensus 64 ~~~~~~~~~~vlI~-G~g-~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~ 123 (255)
....+..-+.+++. +.- ..-.++...++..+..++++-..+++..+.++++|++.++++.
T Consensus 58 ~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~ 119 (134)
T d2hmva1 58 LSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPE 119 (134)
T ss_dssp HHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHH
T ss_pred hccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChH
Confidence 45566665666554 433 4445566677788866899999899999999999999998754
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Probab=83.48 E-value=1.8 Score=32.91 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=66.6
Q ss_pred hhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhcCCcEEeCCCCC----------
Q 025257 59 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRAKNFGVTEFVNPKDH---------- 125 (255)
Q Consensus 59 ~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~---~~~~~~~~~~~g~~~vi~~~~~---------- 125 (255)
++.+.....-.+...|+...+|..|.+++..++..|. +++++.. ++.+.+.++.+|++.+....+.
T Consensus 63 ~~~i~~~~~~~~~~~vv~assGN~g~a~A~~a~~~g~-~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~ 141 (331)
T d1tdja1 63 YAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGV-KALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIEL 141 (331)
T ss_dssp HHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTC-CEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeecccchhHHHHHHhhccccc-cceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhhhh
Confidence 3333333333455556666678899999999999999 6666643 4457777888998755432220
Q ss_pred -------------Cch-------HHHHHHhhcCCCccEEEecCCcHHHH---HHHHHHhccCCceEEEEcc
Q 025257 126 -------------DKP-------IQQVLVDLTDGGVDYSFECIGNVSVM---RAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 126 -------------~~~-------~~~~i~~~~~~~~d~v~d~~g~~~~~---~~~~~~l~~~~G~~v~~g~ 173 (255)
.+. ...++.+-. +.+|.||-++|+-..+ -..++.+.+. .+++.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~-~~ii~ve~ 210 (331)
T d1tdja1 142 SQQQGFTWVPPFDHPMVIAGQGTLALELLQQD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQ-IKVIAVEA 210 (331)
T ss_dssp HHHHCCEECCSSCCHHHHHHHHHHHHHHHHHC-TTCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEEE
T ss_pred hhcCCCccccccCChHHhhhhhhHHHHHHHhc-CCCCEEEEeCChhHHHHHHHHHHHHhCCC-cEEEEecc
Confidence 000 112222221 2689999888864433 3444455564 67777743
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.31 E-value=0.88 Score=32.45 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=27.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHH--------------------HcCCCeEEEEcCC
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAK--------------------AAGASRVIGIDID 104 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~--------------------~~g~~~v~~~~~~ 104 (255)
.+++|+|+|+|.+++=.++.+. ..|+++|.++.|.
T Consensus 38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR 92 (216)
T d1lqta1 38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR 92 (216)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence 4789999999999988877665 4677677777764
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=82.90 E-value=0.26 Score=34.12 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.2
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCC
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGA 95 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~ 95 (255)
.+|+|.|+|.+|+-++..++..|.
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~ 27 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGY 27 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTC
T ss_pred CCEEEECccHHHHHHHHHHHhcCC
Confidence 359999999999999988888887
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.82 E-value=0.41 Score=32.31 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=31.5
Q ss_pred hhhhhhHHHhhcCCCCCCEEEEEcCChHHHHHHHHHHHcCC
Q 025257 55 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 95 (255)
Q Consensus 55 ~~ta~~~l~~~~~~~~~~~vlI~G~g~vG~~a~~l~~~~g~ 95 (255)
..+|+-.| ..+...+++|+|.|+|.+|.-++..+.+.|+
T Consensus 15 V~~a~d~L--~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~ 53 (162)
T d1ps9a2 15 VLSYLDVL--RDKAPVGNKVAIIGCGGIGFDTAMYLSQPGE 53 (162)
T ss_dssp EEEHHHHH--TSCCCCCSEEEEECCHHHHHHHHHHHTCCSS
T ss_pred eEEHHHHh--hCccccCCceEEEcCchhHHHHHHHHHHcCC
Confidence 34555433 3466789999999999999999999999998
|
| >d1kjna_ c.115.1.1 (A:) Hypothetical protein MTH777 (MT0777) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Hypothetical protein MTH777 (MT0777) superfamily: Hypothetical protein MTH777 (MT0777) family: Hypothetical protein MTH777 (MT0777) domain: Hypothetical protein MTH777 (MT0777) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=82.48 E-value=4.7 Score=26.40 Aligned_cols=87 Identities=11% Similarity=0.167 Sum_probs=55.4
Q ss_pred EEEEEcC-C-----hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 73 IVAVFGL-G-----TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 73 ~vlI~G~-g-----~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
.++++|+ - ++.+.+.-.++..|. +|++.. ++..+++++....+..+-..- .++.+.+.+...+.+|++|-
T Consensus 4 ~lilLGCPe~Pvq~~~~lyl~~~Lk~kG~-~v~Va~-npAA~kLievaDPek~Yl~~~--vdld~~i~~i~e~d~d~~~~ 79 (152)
T d1kjna_ 4 ALMVLGCPESPVQIPLAIYTSHKLKKKGF-RVTVTA-NPAALRLVQVADPEGIYTDEM--VDLESCINELAEGDYEFLAG 79 (152)
T ss_dssp EEEECCCSCSTTHHHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHHSTTCCSCSEE--EEHHHHHHHCCTTSCSEEEE
T ss_pred EEEEecCCCCcchhHHHHHHHHHHHhcCC-ceEEec-CHHHHhHhhhcCccchhhhcc--ccHHHHhhhhhhcCCceEEE
Confidence 3455586 3 455666677778899 888888 688888887665443322221 45767777776668888887
Q ss_pred cCCcHHH--HHHHHHHhcc
Q 025257 147 CIGNVSV--MRAALECCHK 163 (255)
Q Consensus 147 ~~g~~~~--~~~~~~~l~~ 163 (255)
.+-.... ....++.+..
T Consensus 80 F~HNDAgv~Ya~T~~~~~~ 98 (152)
T d1kjna_ 80 FVPNDAAAAYLVTFAGILN 98 (152)
T ss_dssp EESSHHHHHHHHHHHHHHC
T ss_pred EeecchhHHHHHHHHHHhC
Confidence 6665442 3445555554
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.44 E-value=0.47 Score=37.88 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=30.2
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
.+|||.|+|++|.-++..+...|..++..++...
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 6799999999999999999999998999988643
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=82.33 E-value=0.4 Score=31.19 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=48.0
Q ss_pred CEEEEEcCChHHHHHHHHHH-HcCCCeEEEEcCC-cchHHHHHhcCCcEEeCCCCCCchHHHHHHhhcCCCccEEEecCC
Q 025257 72 SIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDID-PKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 149 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~-~~g~~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d~~g 149 (255)
.+|+|+|||..|.+++.... ..++ +++++..+ +++.. +...--.|++. .++.+.+ ....++++-++.
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~~~~-~iv~fiDdd~~k~G--~~I~Gi~V~~~----~~l~~~~----~~~i~iai~~i~ 72 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFGESF-ELRGFFDVDPEKVG--RPVRGGVIEHV----DLLPQRV----PGRIEIALLTVP 72 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSE-EEEEEEESCTTTTT--CEETTEEEEEG----GGHHHHS----TTTCCEEEECSC
T ss_pred ceEEEEcCCHHHHHHHHhHhhcCCc-EEEEEEeCchHhcC--CEECCEEEecH----HHHHHHH----hhcccEEEEeCC
Confidence 48999999999997776443 3466 77777543 22221 12211235432 3333322 235788888888
Q ss_pred cHHHHHHHHHHhccC
Q 025257 150 NVSVMRAALECCHKG 164 (255)
Q Consensus 150 ~~~~~~~~~~~l~~~ 164 (255)
... .++..+.|-..
T Consensus 73 ~~~-~~~I~d~l~~~ 86 (126)
T d2dt5a2 73 REA-AQKAADLLVAA 86 (126)
T ss_dssp HHH-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHc
Confidence 776 67777766653
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.25 E-value=0.14 Score=37.06 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGA 95 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~ 95 (255)
+|+|.|+|.+|+.++..+...|.
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYH 24 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHT
T ss_pred EEEEECchHHHHHHHHHHHHCCC
Confidence 68999999999998888887886
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.23 E-value=5.4 Score=26.87 Aligned_cols=71 Identities=20% Similarity=0.122 Sum_probs=40.5
Q ss_pred EEEEEcCChHH--HHHHHHHHHcC---CCeEEEEcCCcch--HHHHH--------hcCCc-EEeCCCCCCchHHHHHHhh
Q 025257 73 IVAVFGLGTVG--LAVAEGAKAAG---ASRVIGIDIDPKK--FDRAK--------NFGVT-EFVNPKDHDKPIQQVLVDL 136 (255)
Q Consensus 73 ~vlI~G~g~vG--~~a~~l~~~~g---~~~v~~~~~~~~~--~~~~~--------~~g~~-~vi~~~~~~~~~~~~i~~~ 136 (255)
+|.|.|+|++| .+...+++... ..+++.++.++++ .+.+. +.+.. .+..+ .+..+.++
T Consensus 3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~----td~~~al~-- 76 (169)
T d1s6ya1 3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLT----LDRRRALD-- 76 (169)
T ss_dssp EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEE----SCHHHHHT--
T ss_pred EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeec----CCchhhcC--
Confidence 57888987544 56666666442 2388888877643 32221 22332 22222 23334443
Q ss_pred cCCCccEEEecCCcHH
Q 025257 137 TDGGVDYSFECIGNVS 152 (255)
Q Consensus 137 ~~~~~d~v~d~~g~~~ 152 (255)
+.|+|+.+.+.+.
T Consensus 77 ---gaDvVv~ta~~~~ 89 (169)
T d1s6ya1 77 ---GADFVTTQFRVGG 89 (169)
T ss_dssp ---TCSEEEECCCTTH
T ss_pred ---CCCEEEEccccCC
Confidence 6899999998543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=82.19 E-value=1.5 Score=29.04 Aligned_cols=37 Identities=30% Similarity=0.445 Sum_probs=29.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCcchH
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKF 108 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~~~~ 108 (255)
.+|.|.|+|.+|..++..+...|.. +++.++.++++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~ 39 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERV 39 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 3588889999999998888877743 788888877553
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=81.83 E-value=0.54 Score=35.92 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=27.3
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 105 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~ 105 (255)
|||.|+|.-|+.++.-|...|. +|++++..+
T Consensus 10 VlVVG~G~AGl~AAl~aa~~G~-~V~lleK~~ 40 (330)
T d1neka2 10 AVVIGAGGAGMRAALQISQSGQ-TCALLSKVF 40 (330)
T ss_dssp CEEECCSHHHHHHHHHHHHTTC-CCEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHcCC-eEEEEeCCC
Confidence 7889999999999988888999 999998654
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=81.56 E-value=0.78 Score=30.82 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=24.7
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 025257 72 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 104 (255)
Q Consensus 72 ~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~ 104 (255)
.+|+|.|+|.+|.-+++.++ .+. +|.++.+.
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~-~~~-~Vtvv~~~ 31 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLS-QTY-EVTVIDKE 31 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTS-EEEEECSS
T ss_pred CeEEEECCcHHHHHHHHHHH-cCC-CEEEEecc
Confidence 37999999999998887765 366 88888754
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.52 E-value=4.4 Score=31.41 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=60.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----cCCcE---------------E-eCCCCCCchH
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE---------------F-VNPKDHDKPI 129 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~~~~~~----~g~~~---------------v-i~~~~~~~~~ 129 (255)
++.+||- +-++.|.-++++++..|+.+|++.+.+++-.+.+++ .+... + ++. .+.
T Consensus 45 ~~~~vLD-~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~----~Da 119 (375)
T d2dula1 45 NPKIVLD-ALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINH----DDA 119 (375)
T ss_dssp CCSEEEE-SSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEE----SCH
T ss_pred CCCEEEE-cCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeeh----hhh
Confidence 3444433 445668899999999998799999999998888853 12111 1 111 122
Q ss_pred HHHHHhhcCCCccEE-EecCCcHH-HHHHHHHHhccCCceEEEE
Q 025257 130 QQVLVDLTDGGVDYS-FECIGNVS-VMRAALECCHKGWGTSVIV 171 (255)
Q Consensus 130 ~~~i~~~~~~~~d~v-~d~~g~~~-~~~~~~~~l~~~~G~~v~~ 171 (255)
...+.+ .+..||+| +|..|.+. -++.+++.++.+ |.+...
T Consensus 120 ~~~~~~-~~~~fDvIDiDPfGs~~pfldsAi~a~~~~-Gll~vT 161 (375)
T d2dula1 120 NRLMAE-RHRYFHFIDLDPFGSPMEFLDTALRSAKRR-GILGVT 161 (375)
T ss_dssp HHHHHH-STTCEEEEEECCSSCCHHHHHHHHHHEEEE-EEEEEE
T ss_pred hhhhHh-hcCcCCcccCCCCCCcHHHHHHHHHHhccC-CEEEEE
Confidence 222222 12279988 59998743 378999999996 766555
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.19 E-value=1.6 Score=29.49 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=30.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCcch
Q 025257 71 GSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKK 107 (255)
Q Consensus 71 ~~~vlI~G~g~vG~~a~~l~~~~g~~-~v~~~~~~~~~ 107 (255)
..+|.|.|+|.+|..++..+...|.. +++.++.++++
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~ 56 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDK 56 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchh
Confidence 35799999999999999888888743 68888877654
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=81.04 E-value=6.1 Score=26.70 Aligned_cols=98 Identities=22% Similarity=0.336 Sum_probs=56.7
Q ss_pred EEEEEcCChHHHHHHHHHHHc-CCCeEEEEcC---CcchHHHHHhc----C---Cc-------EEeCCCC----CCchHH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAA-GASRVIGIDI---DPKKFDRAKNF----G---VT-------EFVNPKD----HDKPIQ 130 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~-g~~~v~~~~~---~~~~~~~~~~~----g---~~-------~vi~~~~----~~~~~~ 130 (255)
+|.|.|-|-+|.++.+.+... .. +++++-. +.+....+-+. | .+ .+++.+. ...+ .
T Consensus 3 kIgINGFGRIGR~v~R~~~~~~~~-~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~-p 80 (169)
T d1u8fo1 3 KVGVNGFGRIGRLVTRAAFNSGKV-DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD-P 80 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSS-EEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS-G
T ss_pred EEEEECCcHHHHHHHHHHHHCCCc-EEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCC-h
Confidence 688999999999999877755 46 7777743 23444444332 1 11 0111100 0011 1
Q ss_pred HHHHhhcCCCccEEEecCCcHHHHHHHHHHhccCCceEEEEccC
Q 025257 131 QVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 174 (255)
Q Consensus 131 ~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 174 (255)
+++ .|..-++|+|+||+|.-...+.+...+..+ .+=|.+..+
T Consensus 81 ~~i-~W~~~~vDiViEcTG~f~~~~~~~~hl~~g-akkViiSaP 122 (169)
T d1u8fo1 81 SKI-KWGDAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISAP 122 (169)
T ss_dssp GGC-CTTTTTCCEEEECSSSCCSHHHHGGGGGGT-CSEEEESSC
T ss_pred hhC-CccccCCCEEEEecceeccHHHHHHHHhcC-CceEeeccc
Confidence 112 121127999999999855567777788885 655566543
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=80.79 E-value=1.4 Score=30.67 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=28.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 025257 70 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 108 (255)
Q Consensus 70 ~~~~vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~~~~~~ 108 (255)
+.++++|+|+|+.|.....+++..+. +++....+....
T Consensus 1 k~kkl~i~Gagg~~~~v~di~~~~~~-~~~~f~dd~~~~ 38 (193)
T d3bswa1 1 RTEKIYIYGASGHGLVCEDVAKNMGY-KECIFLDDFKGM 38 (193)
T ss_dssp CCSEEEEEC--CHHHHHHHHHHHHTC-CEEEECCCCTTG
T ss_pred CCCEEEEEcCCHhHHHHHHHHHhCCC-cEEEEEcCCCCc
Confidence 45789999999999999999999998 777776443333
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=80.69 E-value=3.9 Score=27.90 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=48.3
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhcC----CcEEeCCCCCCchHHHHHHhhcCCCccEEEe
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFG----VTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 146 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~-g~~~v~~~~~~~~~~~~~~~~g----~~~vi~~~~~~~~~~~~i~~~~~~~~d~v~d 146 (255)
+|.|.|+ |-+|+-+++++..+ .. ++..+..+...-+.+.+.. ....+.. .+.. .+.+ +.|++|-
T Consensus 3 kVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~----~~~~-~~~~----~~dvvf~ 72 (176)
T d1vkna1 3 RAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILSE----FDPE-KVSK----NCDVLFT 72 (176)
T ss_dssp EEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCBC----CCHH-HHHH----HCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhccccccc----cCHh-Hhcc----ccceEEE
Confidence 6889998 99999999988866 44 6666654433222222211 1111211 1221 1211 4899999
Q ss_pred cCCcHHHHHHHHHHhccCCceEEEEcc
Q 025257 147 CIGNVSVMRAALECCHKGWGTSVIVGV 173 (255)
Q Consensus 147 ~~g~~~~~~~~~~~l~~~~G~~v~~g~ 173 (255)
|.+...+. ...... .+ -+++..+.
T Consensus 73 a~p~~~s~-~~~~~~-~~-~~VIDlSa 96 (176)
T d1vkna1 73 ALPAGASY-DLVREL-KG-VKIIDLGA 96 (176)
T ss_dssp CCSTTHHH-HHHTTC-CS-CEEEESSS
T ss_pred ccccHHHH-HHHHhh-cc-ceEEecCc
Confidence 98877633 333322 33 56665543
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.62 E-value=1.1 Score=31.96 Aligned_cols=30 Identities=37% Similarity=0.430 Sum_probs=24.0
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 025257 74 VAVFGLGTVGLAVAEGAKAAGASRVIGIDI 103 (255)
Q Consensus 74 vlI~G~g~vG~~a~~l~~~~g~~~v~~~~~ 103 (255)
|+|+|+|+-|+.++..+...|..+|.+++.
T Consensus 6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~ 35 (238)
T d1aoga1 6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDV 35 (238)
T ss_dssp EEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence 678899999999988888888646777653
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.59 E-value=1.1 Score=32.03 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=25.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCC--eEEEEcCC
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID 104 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~~--~v~~~~~~ 104 (255)
+|+|.|+||-|+.++..|..+|.+ +|.+++..
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~ 36 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD 36 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence 689999999999988887776642 67777753
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=80.57 E-value=0.13 Score=39.32 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.2
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCC
Q 025257 73 IVAVFGL-GTVGLAVAEGAKAAGA 95 (255)
Q Consensus 73 ~vlI~G~-g~vG~~a~~l~~~~g~ 95 (255)
+|||+|+ |-+|..+++.+...|.
T Consensus 2 kIlItG~tGfIG~~l~~~L~~~g~ 25 (322)
T d1r6da_ 2 RLLVTGGAGFIGSHFVRQLLAGAY 25 (322)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC
Confidence 6999997 9999999998887765
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.56 E-value=1.5 Score=28.87 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=28.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcch
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKK 107 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~ 107 (255)
+|.|.|+|.+|...+..+...|. .+++.++.++++
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~ 37 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDL 37 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHH
T ss_pred EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccch
Confidence 57888999999998887777764 478889887765
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=80.56 E-value=1.6 Score=28.73 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=27.7
Q ss_pred EEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCCcchH
Q 025257 73 IVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKF 108 (255)
Q Consensus 73 ~vlI~G~g~vG~~a~~l~~~~g~-~~v~~~~~~~~~~ 108 (255)
+|.|.|+|.+|...+..+...+. .+++.++.++++.
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~ 38 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRA 38 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccc
Confidence 57788999999998877776663 3788888776543
|