Citrus Sinensis ID: 025258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKVLVRYLYHAVENHAIENM
Secondary Structure (PSIPRED)
cccEEccccEEEEEccccccccccccccccccccccEEHHHHcccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHccEEEEEEcccEEEccccEEEcccEEEEEEccHHHHHHccccHHHHHHHHHHcccEEEEcccccccEEEEEEcccccccccHHHHHHHcHHHHHccccccHHHHcccccccccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccEEEEEcccccEEEEcccccHHHHcccccEEHEHcccHEEccccccccHHHHHcccccccccEccHcccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHccccEHHccccEEEcccccccccEEEEEHHcccccccccccccccHHHHHHccccEEEEcccccccEEcEEEEccccccccHHHHHHEccHcccccccccHHHcccccccccccccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
maqitsqgglnllfngdgssfgveprdpfqyklgsglrsievhkrklirprngvwssmnkkksskfSVDASlnvsgkgisgeseeydsdeefDELACFRGLVldisyrpvnvVCWKRAICLEFMEKADVLEYYdqtinspngsfyiPAVLRVRHLLQVVKRRRIKnnlsrknlmyrdnftcqycssrenltidhvvpasrggewkWENLVAACFKCNSRKGKKTLEEANMQLSRVPKVLVRYLYHAVENHAIENM
Flexible Loop (DISEMBL)
maqitsqgglnLLFNGDGSSFGVEPRDPFQYKLgsglrsievhkrklirprngvwssmnkkksskfsvdaslnvsgkgisgeseeydsDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLqvvkrrriknnlsrknlmyrdNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSrkgkktleeanmqlsrvpKVLVRYLYHAVENHAIENM
Low Complexity Region (SEG)
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWssmnkkksskfsVDASLNVSGKGIsgeseeydsdeefdeLACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKVLVRYLYHAVENHAIENM
Disordered region (IsUnstruct)
***********LLFN*************FQYKLGSGLRSIEVHKRKLI**********************************************LACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG**TL**ANMQLSRVPKVLVRYLYHAVEN******
Disordered Region (DISOPRED)
********GLNLLFNGDGSSFGVEPRDPFQYKLGSGLRS*********************************************************CFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKVLVRYLYHAVENHA****
Disordered Region (DISEMBL)
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSS************ASLNVSG***************FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKVLVRYLYHAVENHAIENM
Disordered Region (DISPRO)
*AQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVW***NK*K*************************S***FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKVLVRYLYHAVENHA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKVLVRYLYHAVENHAIENM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
255568954	275	endonuclease, putative [Ricinus communis	0.933	0.865	0.644	2e-84
225441641	277	PREDICTED: uncharacterized protein LOC10	0.964	0.888	0.643	6e-84
449446780	277	PREDICTED: uncharacterized protein LOC10	0.952	0.877	0.624	2e-83
449489536	250	PREDICTED: uncharacterized protein LOC10	0.917	0.936	0.635	5e-83
224123804	272	predicted protein [Populus trichocarpa]	0.925	0.867	0.646	1e-81
356571688	288	PREDICTED: uncharacterized protein LOC10	0.913	0.809	0.583	7e-73
297853378	283	HNH endonuclease domain-containing prote	0.921	0.830	0.586	8e-73
297739746	187	unnamed protein product [Vitis vinifera]	0.631	0.860	0.809	8e-73
30682222	284	HNH endonuclease [Arabidopsis thaliana]	0.921	0.827	0.583	2e-71
356560967	282	PREDICTED: uncharacterized protein LOC10	0.917	0.829	0.596	2e-71

>gi|255568954|ref|XP_002525447.1| endonuclease, putative [Ricinus communis] gi|223535260|gb|EEF36937.1| endonuclease, putative [Ricinus communis]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 163/253 (64%), Positives = 189/253 (74%), Gaps = 15/253 (5%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGL----RSIEVHKRKL--IRPRNGV 54
           MAQ T+QG L LLFN DG    +         LG+G      S  V K K   I     +
Sbjct: 1   MAQFTAQGRLKLLFNSDGIQCKL---------LGNGFVGGCTSFRVQKGKFRYIGSSTRL 51

Query: 55  WSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVC 114
            +S   KKS  F+ +ASLN   +   GESE+YDS+ E D+LACFRGLVLDISYRPVNVVC
Sbjct: 52  HASSVSKKSRHFNAEASLNAEEENDIGESEDYDSEYETDDLACFRGLVLDISYRPVNVVC 111

Query: 115 WKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 174
           WKRAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLRV HLLQVVKRRRIK+NLSRKN++
Sbjct: 112 WKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKSNLSRKNVL 171

Query: 175 YRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR 234
           +RDN+TCQYCSSRENLTIDHV+P +RGG+W WENLV AC KCNS+KG+KT EEANM+L +
Sbjct: 172 HRDNYTCQYCSSRENLTIDHVLPTARGGQWTWENLVTACSKCNSKKGQKTPEEANMKLIK 231

Query: 235 VPKVLVRYLYHAV 247
           VPK    Y   A+
Sbjct: 232 VPKAPKEYDILAI 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441641|ref|XP_002282210.1| PREDICTED: uncharacterized protein LOC100264031 [Vitis vinifera]

 Score =  316 bits (810), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 166/258 (64%), Positives = 188/258 (72%), Gaps = 12/258 (4%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQ-YKLGSGL-RSIEVHKRKL-IRPRNGVWSS 57
           MAQ T+QG       G     GVEP+DP+  YK G G      +H  KL       ++SS
Sbjct: 2   MAQFTAQG------QGRLKPLGVEPKDPYHCYKFGGGCWPRFRIHSPKLGFLDSTKLYSS 55

Query: 58  MNKKKSSKFSVDASLNVSGKGI-SGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWK 116
               KS+ F   A LNV  KGI   +    D + E DELACFRGLVLD+SYRPVNVVCW+
Sbjct: 56  SLNTKSNHFRAQARLNVGDKGIYDDDVHAGDGEFEMDELACFRGLVLDLSYRPVNVVCWR 115

Query: 117 RAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYR 176
           RAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLRV HLLQVVKRRRIKNNLSRKN+ YR
Sbjct: 116 RAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKNNLSRKNIFYR 175

Query: 177 DNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVP 236
           DNFTCQYCSS ENLT+DHV+P +RGGEWKWENLV AC KCNS+KG+KTLEEANM+LS+VP
Sbjct: 176 DNFTCQYCSSGENLTVDHVLPIARGGEWKWENLVTACAKCNSKKGQKTLEEANMKLSKVP 235

Query: 237 KVLVRY--LYHAVENHAI 252
           K    Y  L   + N AI
Sbjct: 236 KAPKDYDILAIPLTNTAI 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446780|ref|XP_004141149.1| PREDICTED: uncharacterized protein LOC101207660 [Cucumis sativus]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 158/253 (62%), Positives = 192/253 (75%), Gaps = 10/253 (3%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
           MAQ T+   L LL NGDG  FG E +D F+YKL    RS+   +  L RP +   SS + 
Sbjct: 1   MAQFTAHTRLKLLLNGDGLPFGSESKDRFRYKL----RSVRPRRFPLSRPSSSTTSSTSA 56

Query: 61  -KKSSKFSVDASLNVSGKGISGESEE-----YDSDEEFDELACFRGLVLDISYRPVNVVC 114
            +K ++ + +  + V  + ++G  ++     YD + E D+LACFRGLVLDISYRPVNVVC
Sbjct: 57  LRKPTQHAAEVRVGVRDESVNGGDDDVVGFDYDYELESDDLACFRGLVLDISYRPVNVVC 116

Query: 115 WKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 174
           WKRAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLRV HLLQVVKRRRIKN+LSRKN++
Sbjct: 117 WKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKNSLSRKNIL 176

Query: 175 YRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR 234
           YRDN+TCQYCSS E+LTIDHV+P SRGGEW WENLVAAC KCNS+KG+KT+EEANM+L +
Sbjct: 177 YRDNYTCQYCSSHESLTIDHVLPISRGGEWTWENLVAACVKCNSKKGQKTVEEANMKLKK 236

Query: 235 VPKVLVRYLYHAV 247
            PK    Y   A+
Sbjct: 237 TPKAPKDYDILAI 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489536|ref|XP_004158341.1| PREDICTED: uncharacterized protein LOC101226520 [Cucumis sativus]

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 155/244 (63%), Positives = 191/244 (78%), Gaps = 10/244 (4%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
           MAQ T+   L LL NGDG  FG E +D F+YKL    RS+   +  L RP +   SS + 
Sbjct: 1   MAQFTAHTRLKLLLNGDGLPFGSESKDRFRYKL----RSVRPRRFPLSRPSSSTTSSTSA 56

Query: 61  -KKSSKFSVDASLNVSGKGISGESEE-----YDSDEEFDELACFRGLVLDISYRPVNVVC 114
            +K ++ + +  + V  + ++G  ++     YD + E D+LACFRGLVLDISYRPVNVVC
Sbjct: 57  LRKPTQHAAEVRVGVRDESVNGGDDDVVGFDYDYELESDDLACFRGLVLDISYRPVNVVC 116

Query: 115 WKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 174
           WKRAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLRV HLLQVVKRRRIKN+LSRKN++
Sbjct: 117 WKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKNSLSRKNIL 176

Query: 175 YRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR 234
           YRDN+TCQYCSS E+LTIDHV+P SRGGEW WENLVAAC KCNS+KG+KT+EEANM+L +
Sbjct: 177 YRDNYTCQYCSSHESLTIDHVLPISRGGEWTWENLVAACVKCNSKKGQKTVEEANMKLKK 236

Query: 235 VPKV 238
           +P++
Sbjct: 237 LPRL 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123804|ref|XP_002319168.1| predicted protein [Populus trichocarpa] gi|222857544|gb|EEE95091.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/252 (64%), Positives = 190/252 (75%), Gaps = 16/252 (6%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKL-----IRPRNGVW 55
           MAQ T+ G L   FN DG+S+ +   D        GLRS +  KRK+        R    
Sbjct: 1   MAQFTAHGRLKFPFNNDGASWKLLGND-----FVGGLRSFQNQKRKIRFLGTSGTRLYAA 55

Query: 56  SSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCW 115
           SS++KK    F  +AS +VS   ++ +SEE   D E DELACFRGLVLDISYRPVNVVCW
Sbjct: 56  SSLSKK-PKHFYTEASQSVSE--VNDDSEE---DYERDELACFRGLVLDISYRPVNVVCW 109

Query: 116 KRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMY 175
           +RAICLEFMEKADVLEYYDQ +NSP+GSFYIPAVLRV HLLQVVKRRRIK+NLSRKN++Y
Sbjct: 110 RRAICLEFMEKADVLEYYDQAVNSPSGSFYIPAVLRVPHLLQVVKRRRIKSNLSRKNILY 169

Query: 176 RDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRV 235
           RDN+TCQYCSSRENLTIDHV+P +RGGEWKWENLVAAC KCNS+KG+KT EEANM+LS+V
Sbjct: 170 RDNYTCQYCSSRENLTIDHVLPTARGGEWKWENLVAACAKCNSKKGQKTPEEANMKLSKV 229

Query: 236 PKVLVRYLYHAV 247
           PK    Y   A+
Sbjct: 230 PKAPKDYDILAI 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571688|ref|XP_003554006.1| PREDICTED: uncharacterized protein LOC100787021 isoform 1 [Glycine max] gi|356571690|ref|XP_003554007.1| PREDICTED: uncharacterized protein LOC100787021 isoform 2 [Glycine max]

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 150/257 (58%), Positives = 175/257 (68%), Gaps = 24/257 (9%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
           MAQ T+QG L LL NG+G S  +E +DPF YK     RS++ HKR+  R           
Sbjct: 1   MAQFTTQGRLKLLLNGEGVSSVLEHKDPFLYKC----RSVQTHKRR-TRYAGSSARIYYA 55

Query: 61  KKSSKFSVDASLNVSGKGISGESEEYDSDE-------------------EFDELACFRGL 101
             SS  S     N   +  SG    +D  +                   + D L+CFRGL
Sbjct: 56  STSSLSSKSHRCNAEARHTSGNGSVHDEYDDIDDDEDEDDEEEEEEDVFDRDGLSCFRGL 115

Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKR 161
           VLDI+YRPVNVV WKRAICLEFMEKADVLEYY +T+NSP+GSFYIPAVLRV HLLQVVKR
Sbjct: 116 VLDIAYRPVNVVGWKRAICLEFMEKADVLEYYAKTVNSPSGSFYIPAVLRVPHLLQVVKR 175

Query: 162 RRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
           R IKNNLSRKN+++RDN+TCQYCSS ENLTIDHVVPA+ GGEW WENLV AC KCN +KG
Sbjct: 176 RIIKNNLSRKNILFRDNYTCQYCSSHENLTIDHVVPAALGGEWTWENLVTACAKCNCKKG 235

Query: 222 KKTLEEANMQLSRVPKV 238
           +KTLEEA M+L + PKV
Sbjct: 236 RKTLEEAKMKLIKPPKV 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853378|ref|XP_002894570.1| HNH endonuclease domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297340412|gb|EFH70829.1| HNH endonuclease domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 143/244 (58%), Positives = 180/244 (73%), Gaps = 9/244 (3%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQ---YKLGSGLRSIEVHKRKL---IRPRNGV 54
           MA  +S+  L LL + DG SFGV+ RD F+   Y  G G   + + + +L    R  +  
Sbjct: 1   MAHFSSR--LKLLSSNDGLSFGVDSRDQFRQSLYMAGGGTPLVSIRRSRLKFCARIFSSY 58

Query: 55  WSSMNKKKSSKF-SVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVV 113
                +KK   F + + +L +       + +  D   E D+L+CFRGLVLDISYRPVNVV
Sbjct: 59  SFPYKRKKIRDFDNTEKNLGIDEDNDDWDFDGDDDVLETDDLSCFRGLVLDISYRPVNVV 118

Query: 114 CWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNL 173
           CWKRAICLE+M+KADVLEYYDQT++SP GSFYIPAVLRV HLLQVVKRRR+KN+LSRKN+
Sbjct: 119 CWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPHLLQVVKRRRVKNSLSRKNI 178

Query: 174 MYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLS 233
           + RD++TCQYCSSRENLTIDHV+P SRGGEW W+NLVAAC +CNS+KG+KT EEA+M+L 
Sbjct: 179 LLRDDYTCQYCSSRENLTIDHVMPVSRGGEWSWQNLVAACSRCNSKKGQKTAEEAHMKLL 238

Query: 234 RVPK 237
           +VPK
Sbjct: 239 KVPK 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739746|emb|CBI29928.3| unnamed protein product [Vitis vinifera]

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 132/163 (80%), Positives = 145/163 (88%), Gaps = 2/163 (1%)

Query: 92  FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR 151
            DELACFRGLVLD+SYRPVNVVCW+RAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLR
Sbjct: 1   MDELACFRGLVLDLSYRPVNVVCWRRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLR 60

Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVA 211
           V HLLQVVKRRRIKNNLSRKN+ YRDNFTCQYCSS ENLT+DHV+P +RGGEWKWENLV 
Sbjct: 61  VPHLLQVVKRRRIKNNLSRKNIFYRDNFTCQYCSSGENLTVDHVLPIARGGEWKWENLVT 120

Query: 212 ACFKCNSRKGKKTLEEANMQLSRVPKVLVRY--LYHAVENHAI 252
           AC KCNS+KG+KTLEEANM+LS+VPK    Y  L   + N AI
Sbjct: 121 ACAKCNSKKGQKTLEEANMKLSKVPKAPKDYDILAIPLTNTAI 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682222|ref|NP_179964.2| HNH endonuclease [Arabidopsis thaliana] gi|38603958|gb|AAR24724.1| At2g23840 [Arabidopsis thaliana] gi|44681452|gb|AAS47666.1| At2g23840 [Arabidopsis thaliana] gi|330252404|gb|AEC07498.1| HNH endonuclease [Arabidopsis thaliana]

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/245 (58%), Positives = 181/245 (73%), Gaps = 10/245 (4%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKL-----GSGLRSIEVHKRKLIRPRNGVW 55
           MA  +++  L LL + DG SFGV+ RD F+  L     GS L  I + + K        +
Sbjct: 1   MAHFSAR--LKLLSSNDGLSFGVDSRDQFRQSLYMAGGGSPLVPIRMSRLKFCARIFSSY 58

Query: 56  SSMNKKKSSKF--SVDASLNVSGKGISGESEEYDSDEEFDE-LACFRGLVLDISYRPVNV 112
           S   K+K  +   + + +L++       + +  D   E D+ L+CFRGLVLDISYRPVNV
Sbjct: 59  SFPYKRKKIRDLDNTEKNLDIDEDNDEWDFDGDDDGLETDDHLSCFRGLVLDISYRPVNV 118

Query: 113 VCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKN 172
           VCWKRAICLE+M+KADVLEYYDQT++SP GSFYIPAVLRV HLLQVVKRRR+KN+LSRKN
Sbjct: 119 VCWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPHLLQVVKRRRVKNSLSRKN 178

Query: 173 LMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQL 232
           ++ RD++TCQYCSSRENLTIDHV+P SRGGEW W+NLVAAC +CNSRKG+KT +EA+M+L
Sbjct: 179 ILLRDDYTCQYCSSRENLTIDHVMPVSRGGEWTWQNLVAACSRCNSRKGQKTADEAHMKL 238

Query: 233 SRVPK 237
            +VPK
Sbjct: 239 LKVPK 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560967|ref|XP_003548757.1| PREDICTED: uncharacterized protein LOC100810482 [Glycine max]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 149/250 (59%), Positives = 179/250 (71%), Gaps = 16/250 (6%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEP-RDPFQYKLGSGLRSIEVHKRKLIR-----PRNGV 54
           MAQ T+QG L LLFNG+G S  +E  +DPF Y   +  RS++ HKR+  R      R   
Sbjct: 1   MAQFTTQGRLKLLFNGEGVSSVLEHNKDPFLY---NKCRSVQTHKRRTTRCIGSSARIYY 57

Query: 55  WSSMNKKKSSKFSVDASLNVSGKG------ISGESEEYDSDEEFDELACFRGLVLDISYR 108
            SS    K+   + +A L  SG G           ++ D   + D L+CFRGLVLDI+YR
Sbjct: 58  VSSSLSNKTHLCNAEAWLT-SGNGSVHDEYDDDVEDDDDDVFDRDGLSCFRGLVLDIAYR 116

Query: 109 PVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNL 168
           PVNVV WKRAICLEFMEKADVLEYY +T+NSP+GSFYIPAVLRV  LLQVVKRR +KNNL
Sbjct: 117 PVNVVGWKRAICLEFMEKADVLEYYAKTVNSPSGSFYIPAVLRVPQLLQVVKRRIVKNNL 176

Query: 169 SRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA 228
           SRKN+++RDN+TCQYCSS ENLTIDHV+P + GGEW WENLV AC KCN +KG+KTLEEA
Sbjct: 177 SRKNILFRDNYTCQYCSSHENLTIDHVMPTALGGEWTWENLVTACAKCNCKKGRKTLEEA 236

Query: 229 NMQLSRVPKV 238
            M+L + PKV
Sbjct: 237 KMKLIKPPKV 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2061476	284	AT2G23840 [Arabidopsis thalian	0.560	0.503	0.811	3.3e-69
TIGR_CMR|SPO_2123	194	SPO_2123 "HNH endonuclease fam	0.505	0.664	0.413	2.2e-25
UNIPROTKB|O53196	222	Rv2469c "Uncharacterized prote	0.525	0.603	0.404	1.6e-22
UNIPROTKB|Q0BWS6	197	HNE_3394 "HNH endonuclease dom	0.501	0.649	0.363	3.4e-22
UNIPROTKB|Q3Z918	177	DET0537 "HNH endonuclease doma	0.552	0.796	0.397	9e-22
TIGR_CMR|DET_0537	177	DET_0537 "HNH endonuclease dom	0.552	0.796	0.397	9e-22
UNIPROTKB|Q604E9	196	MCA2596 "HNH endonuclease doma	0.301	0.392	0.402	1.7e-11
UNIPROTKB|Q74BH1	101	GSU2070 "HNH endonuclease fami	0.250	0.633	0.371	3.8e-06
TIGR_CMR|GSU_2070	101	GSU_2070 "HNH endonuclease fam	0.250	0.633	0.371	3.8e-06

TAIR|locus:2061476 AT2G23840 [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
 Identities = 116/143 (81%), Positives = 135/143 (94%)

Query:    95 LACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
             L+CFRGLVLDISYRPVNVVCWKRAICLE+M+KADVLEYYDQT++SP GSFYIPAVLRV H
Sbjct:   101 LSCFRGLVLDISYRPVNVVCWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPH 160

Query:   155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACF 214
             LLQVVKRRR+KN+LSRKN++ RD++TCQYCSSRENLTIDHV+P SRGGEW W+NLVAAC 
Sbjct:   161 LLQVVKRRRVKNSLSRKNILLRDDYTCQYCSSRENLTIDHVMPVSRGGEWTWQNLVAACS 220

Query:   215 KCNSRKGKKTLEEANMQLSRVPK 237
             +CNSRKG+KT +EA+M+L +VPK
Sbjct:   221 RCNSRKGQKTADEAHMKLLKVPK 243

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TIGR_CMR|SPO_2123 SPO_2123 "HNH endonuclease family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 55/133 (41%), Positives = 83/133 (62%)

Query:   105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
             +SY P+++  W+ AI   ++++ D++  YD+ + SP+    IP+V+ ++  ++  KR   
Sbjct:    31 LSYYPLSLWPWQEAIKAAWLDRVDIIAEYDEVVRSPSVVLRIPSVVVLKDYVKPQKRVAF 90

Query:   165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
                 +R NL  RD F CQYC  + +LT DHVVP + GG   WEN+VAAC  CN RKG K+
Sbjct:    91 ----TRFNLFLRDEFRCQYCGGKGDLTFDHVVPRAAGGVTSWENVVAACAPCNLRKGSKS 146

Query:   225 LEEANMQLSRVPK 237
             L +ANM L R P+
Sbjct:   147 LRQANMSLRRPPR 159

GO:0003824 "catalytic activity" evidence=ISS

GO:0006259 "DNA metabolic process" evidence=ISS

UNIPROTKB|O53196 Rv2469c "Uncharacterized protein" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 57/141 (40%), Positives = 83/141 (58%)

Query:    99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHL 155
             R L+L+ +Y P+  +  +RAI +    KADV+ + D +   I+S   S  +P+V+++R  
Sbjct:    56 RVLLLNSTYEPLTALSMRRAIVMVICGKADVV-HEDPSGPVIHSATRSILVPSVIQLRSY 114

Query:   156 LQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
             ++V  R R+   ++R  LM+RD F C YC  + + T+DHVVP SRGG   WEN VA C  
Sbjct:   115 VRVPYRARVP--MTRAALMHRDRFCCAYCGGKAD-TVDHVVPRSRGGAHSWENCVACCSP 171

Query:   216 CNSRKGKKTLEEANMQLSRVP 236
             CN RKG + L E    L R P
Sbjct:   172 CNHRKGDRLLTELGWALRRAP 192

GO:0005576 "extracellular region" evidence=IDA

UNIPROTKB|Q0BWS6 HNE_3394 "HNH endonuclease domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 48/132 (36%), Positives = 75/132 (56%)

Query:   105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
             +SY P+++  W+  I   F+++ D++  YD  + SP+    +P+V+ +R     V++ R 
Sbjct:    34 LSYYPLSLWPWQEVIKAVFLDRVDIIAEYDYVVRSPSREMRLPSVIALRDF---VRQDRA 90

Query:   165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
                 +R N+  RD F C YC + +NLT DHV+P S+GG   WEN+V AC  CN  KG K 
Sbjct:    91 PA-FTRFNVFLRDGFKCAYCGAHDNLTFDHVIPRSKGGRTTWENIVTACSPCNLAKGGKL 149

Query:   225 LEEANMQLSRVP 236
             L  + + L   P
Sbjct:   150 LRASGLDLQHRP 161

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z918 DET0537 "HNH endonuclease domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 58/146 (39%), Positives = 84/146 (57%)

Query:   101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
             LVL+  Y+P+NV   +RA+ L +  KA++LE      +S    F +P+V+R+  L   +K
Sbjct:     7 LVLNQDYQPLNVCHVRRAVLLVYQSKAEMLENGSGFWHSEKDLFALPSVIRLSCL---IK 63

Query:   161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
                ++  L+R  +  RD  TCQYC  ++  LTIDHV P  +GG   WEN+V AC  CN  
Sbjct:    64 HPPLRPKLNRAEIFSRDKHTCQYCGRKDLELTIDHVNPKHQGGPHVWENVVTACLHCNRL 123

Query:   220 KGKKTLEEANMQLSRVPKV-LVRYLY 244
             K  +T E+A+M+L   P V   RY Y
Sbjct:   124 KAGRTPEQAHMKLLSTPGVPQYRYGY 149

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0537 DET_0537 "HNH endonuclease domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 58/146 (39%), Positives = 84/146 (57%)

Query:   101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
             LVL+  Y+P+NV   +RA+ L +  KA++LE      +S    F +P+V+R+  L   +K
Sbjct:     7 LVLNQDYQPLNVCHVRRAVLLVYQSKAEMLENGSGFWHSEKDLFALPSVIRLSCL---IK 63

Query:   161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
                ++  L+R  +  RD  TCQYC  ++  LTIDHV P  +GG   WEN+V AC  CN  
Sbjct:    64 HPPLRPKLNRAEIFSRDKHTCQYCGRKDLELTIDHVNPKHQGGPHVWENVVTACLHCNRL 123

Query:   220 KGKKTLEEANMQLSRVPKV-LVRYLY 244
             K  +T E+A+M+L   P V   RY Y
Sbjct:   124 KAGRTPEQAHMKLLSTPGVPQYRYGY 149

GO:0003824 "catalytic activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q604E9 MCA2596 "HNH endonuclease domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/82 (40%), Positives = 43/82 (52%)

Query:   168 LSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
             L+   L  RD   C YC +      L+ DH+ P SRGG   W N+V AC +CN+ K  +T
Sbjct:    86 LNNAALFRRDGHICLYCGNLFRHSELSRDHIQPTSRGGSDTWNNVVTACKRCNNHKAGRT 145

Query:   225 LEEANMQLSRVP--KVLVRYLY 244
              EEA MQL  +P       Y+Y
Sbjct:   146 PEEAKMQLLAIPFTPTHAEYIY 167

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74BH1 GSU2070 "HNH endonuclease family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 110 (43.8 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query:   157 QVVKRRRIKNNLSRKNLMYR---DNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLV 210
             Q ++R + K    R++  ++      TC +C      E LT+DHVVP  RGG+    N+V
Sbjct:    11 QEIRREKDKARELRRSRWWQTVISRRTCHWCGGDFPPEELTMDHVVPIVRGGKSSRGNVV 70

Query:   211 AACFKCNSRK 220
              AC +CN+RK
Sbjct:    71 PACKECNNRK 80

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2070 GSU_2070 "HNH endonuclease family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 110 (43.8 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query:   157 QVVKRRRIKNNLSRKNLMYR---DNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLV 210
             Q ++R + K    R++  ++      TC +C      E LT+DHVVP  RGG+    N+V
Sbjct:    11 QEIRREKDKARELRRSRWWQTVISRRTCHWCGGDFPPEELTMDHVVPIVRGGKSSRGNVV 70

Query:   211 AACFKCNSRK 220
              AC +CN+RK
Sbjct:    71 PACKECNNRK 80


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      255       228   0.00081  113 3  11 22  0.37    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  193 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.07u 0.12s 17.19t   Elapsed:  00:00:01
  Total cpu time:  17.07u 0.12s 17.19t   Elapsed:  00:00:01
  Start:  Fri May 10 00:25:00 2013   End:  Fri May 10 00:25:01 2013

GO:0004519 "endonuclease activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
COG1403	146	COG1403, McrA, Restriction endonuclease [Defense m	6e-19
pfam01844	47	pfam01844, HNH, HNH endonuclease	6e-11
cd00085	57	cd00085, HNHc, HNH nucleases; HNH endonuclease sig	3e-10
smart00507	52	smart00507, HNHc, HNH nucleases	1e-08
pfam13395	54	pfam13395, HNH_4, HNH endonuclease	7e-04

>gnl|CDD|224321 COG1403, McrA, Restriction endonuclease [Defense mechanisms]

 Score = 80.4 bits (198), Expect = 6e-19
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 115 WKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 174
            + A+     ++A  +  Y   + S +     P+V  +    +    +R      R+ ++
Sbjct: 9   IRPALDRLVSQRAKHVAEYPC-LASESKDLRRPSVTDLTGESKRPSEKRPAKT--RRAVL 65

Query: 175 YRDNFTCQYCSS-RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLS 233
            RDN  CQYC S   +L +DH+VP SRGG   WENL   C +C+++KG +   +A M+L 
Sbjct: 66  LRDNGLCQYCGSVGTDLEVDHIVPLSRGGASAWENLETLCERCHNKKGSRLPGKAGMKLR 125

Query: 234 RVPKVLVRYLYHAVENHAIEN 254
             P+         +       
Sbjct: 126 VKPRKPEVEKRKDLIRAVKLA 146

Length = 146

>gnl|CDD|216737 pfam01844, HNH, HNH endonuclease

 Score = 55.8 bits (135), Expect = 6e-11
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 181 CQYC----SSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
           CQYC       + L +DH++P S+GG     NLV  C  C+ RK  +
Sbjct: 1   CQYCGRPFKDTDALEVDHIIPRSKGGADDLSNLVLLCRSCHRRKHAR 47

Length = 47

>gnl|CDD|238038 cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

 Score = 54.0 bits (130), Expect = 3e-10
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 170 RKNLMYRDNFTCQYC---SSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
           R  L+ RD   C YC      E L +DH++P S GG    +NLV  C KC+ +K 
Sbjct: 4   RLVLLARD-GLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLLCRKCHRKKH 57

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins. Length = 57

>gnl|CDD|214702 smart00507, HNHc, HNH nucleases

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 170 RKNLMYRDNFTCQYCSSREN--LTIDHVVPASRGGEWKWENLVAACFKCNS 218
           R+ L++RD   C YC    +  L +DH++P S GG    +NLV  C KC+ 
Sbjct: 3   RRLLLHRD-GVCAYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLLCPKCHI 52

Length = 52

>gnl|CDD|222099 pfam13395, HNH_4, HNH endonuclease

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 8/52 (15%)

Query: 181 CQYCS--------SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
           C Y                IDH++P SR  +    N V    + N  K  +T
Sbjct: 1   CPYTGKPISIDDLFSNKYDIDHIIPQSRSFDDSLWNKVLVLREANREKSNRT 52

This HNH nuclease domain is found in CRISPR-related proteins. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
COG1403	146	McrA Restriction endonuclease [Defense mechanisms]	99.79
PF13395	54	HNH_4: HNH endonuclease	99.38
cd00085	57	HNHc HNH nucleases; HNH endonuclease signature whi	99.33
smart00507	52	HNHc HNH nucleases.	99.25
TIGR01865	805	cas_Csn1 CRISPR-associated protein, Csn1 family. C	99.24
PF01844	47	HNH: HNH endonuclease; InterPro: IPR002711 HNH end	99.21
TIGR02646	144	conserved hypothetical protein TIGR02646. Members	98.97
PRK11295	113	hypothetical protein; Provisional	98.96
PF14279	71	HNH_5: HNH endonuclease	97.39
COG3513	1088	Predicted CRISPR-associated nuclease, contains Mcr	96.23
PHA02565	157	49 recombination endonuclease VII; Provisional	96.03
smart00782	47	PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein fami	95.65
COG3183	272	Predicted restriction endonuclease [Defense mechan	95.15
PF05766	189	NinG: Bacteriophage Lambda NinG protein; InterPro:	95.02
PF13391	66	HNH_2: HNH endonuclease	94.45
COG3440	301	Predicted restriction endonuclease [Defense mechan	93.57
PF06147	200	DUF968: Protein of unknown function (DUF968); Inte	92.73
TIGR02986	424	restrict_Alw26I type II restriction endonuclease,	92.13
TIGR03031	802	cas_csx12 CRISPR-associated protein, Csx12 family.	91.3
PF09665	511	RE_Alw26IDE: Type II restriction endonuclease (RE_	86.91
PF05198	76	IF3_N: Translation initiation factor IF-3, N-termi	82.08

>COG1403 McrA Restriction endonuclease [Defense mechanisms]

Probab=99.79  E-value=3.4e-19  Score=142.05  Aligned_cols=141  Identities=27%  Similarity=0.464  Sum_probs=123.6

Q ss_pred             cceeeeeeHHHHHHHHHcCceeEEeecCCeeeCCCcceecCcEEEEecceehhhhcccCCHHHHHHHHHHCCCcccccCC
Q 025258          107 YRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSS  186 (255)
Q Consensus       107 y~Pl~~is~qrAi~l~~~gkAevl~~~~~~vrS~s~~~~vPsVIrL~~yv~~p~r~~~~~~~~R~~Vl~RD~~~CqYCG~  186 (255)
                      |.|....+|++++..+..+.|..+..+. ..+++.....+|.+..+..+.+.+...  .++.+|.+++.+|.+.|+||+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~d~~~c~~c~~   77 (146)
T COG1403           1 YNPLESKSIRPALDRLVSQRAKHVAEYP-CLASESKDLRRPSVTDLTGESKRPSEK--RPAKTRRAVLLRDNGLCQYCGS   77 (146)
T ss_pred             CccccccchhHHHHHHhhcccccccCcc-eecceecccccCccceeeeeecccCCC--CchHHHHHHHccccccccccCC
Confidence            6788999999999999999999887654 455667788889999999887776543  3678999999999999999998


Q ss_pred             CC-CCccceEEeCcCCCCCchhhHHHhchhhhhhhcCCCHHHHhhhhccCCCCCchHhHHHhhcc
Q 025258          187 RE-NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKVLVRYLYHAVENH  250 (255)
Q Consensus       187 ~~-~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnrtpeea~m~Ll~~P~~P~~~~~~~l~~~  250 (255)
                      .. .+++|||+|.+.||.+.|+||+++|..||..|+++.+.+++|.+...|..|.......+...
T Consensus        78 ~~~~~~~dHiip~~~g~~~~~~Nl~~lc~~c~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (146)
T COG1403          78 VGTDLEVDHIVPLSRGGASAWENLETLCERCHNKKGSRLPGKAGMKLRVKPRKPEVEKRKDLIRA  142 (146)
T ss_pred             cCCCCceeeEeecccCCcchHHHHHHHHHhhcccccccchhhccCcccccccCCchhhhhhhhhc
Confidence            74 79999999999999999999999999999999999999999999999999998776665443

>PF13395 HNH_4: HNH endonuclease

Probab=99.38  E-value=1.4e-13  Score=98.00  Aligned_cols=45  Identities=49%  Similarity=0.949  Sum_probs=42.1

Q ss_pred             ccccCCC---C-----CCccceEEeCcCCCCCchhhHHHhchhhhhhhcCCCH
Q 025258          181 CQYCSSR---E-----NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTL  225 (255)
Q Consensus       181 CqYCG~~---~-----~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnrtp  225 (255)
                      |.|||+.   .     ..+||||+|+|.++.++++|||++|..||..|++++|
T Consensus         1 C~Y~g~~i~~~~l~~~~~~iDHiiP~s~~~~~s~~Nlvl~~~~~N~~K~~k~P   53 (54)
T PF13395_consen    1 CPYCGKPISIENLFKNKYEIDHIIPRSRGGDDSFWNLVLCCKECNRSKGNKTP   53 (54)
T ss_pred             CCCCCCCCChhhcccCCceeEEEecccccCCCCcchhheECHHHhhcccccCC
Confidence            9999987   2     3799999999999999999999999999999999986

>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

Probab=99.33  E-value=1.1e-12  Score=89.43  Aligned_cols=52  Identities=42%  Similarity=0.797  Sum_probs=47.7

Q ss_pred             HHHHHHHHCCCcccccCCC---CCCccceEEeCcCCCCCchhhHHHhchhhhhhhc
Q 025258          169 SRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG  221 (255)
Q Consensus       169 ~R~~Vl~RD~~~CqYCG~~---~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kg  221 (255)
                      .|..++.|+ ++|+||+..   ..+++|||+|.+.||.++++||+++|..||..|+
T Consensus         3 ~r~~~~~~~-~~C~~c~~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~~~~   57 (57)
T cd00085           3 HRLVLLARD-GLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLLCRKCHRKKH   57 (57)
T ss_pred             HHHHHHHhC-CcCccCCCcCCCCCceEEeecchhhCCCCchHHhHHHHHHHhhccC
Confidence            578889998 899999984   6799999999999999999999999999999874

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.

>smart00507 HNHc HNH nucleases

Probab=99.25  E-value=2.6e-12  Score=86.18  Aligned_cols=49  Identities=41%  Similarity=0.788  Sum_probs=45.1

Q ss_pred             HHHHHHHHCCCcccccCCCC--CCccceEEeCcCCCCCchhhHHHhchhhhh
Q 025258          169 SRKNLMYRDNFTCQYCSSRE--NLTIDHVVPASRGGEWKWENLVAACFKCNS  218 (255)
Q Consensus       169 ~R~~Vl~RD~~~CqYCG~~~--~ltVDHIiP~S~GG~~tweNLv~aC~~CN~  218 (255)
                      .|..++.|| +.|++||...  .+++|||+|.+.||.++++||+++|..||.
T Consensus         2 ~~~~~~~r~-~~C~~C~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~   52 (52)
T smart00507        2 LRRLLLHRD-GVCAYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLLCPKCHI   52 (52)
T ss_pred             HHHHHHHHC-CCCcCCcCCCCCCeEEEecCChhcCCCCChHhCeecChhhCc
Confidence            477899999 9999999874  589999999999999999999999999994

>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family

Probab=99.24  E-value=6.9e-12  Score=129.68  Aligned_cols=61  Identities=31%  Similarity=0.418  Sum_probs=56.2

Q ss_pred             HHHHHHHHHCCCcccccCCC---C------CCccceEEeCcCCCCCchhhHHHhchhhhhhhcCCCHHHH
Q 025258          168 LSRKNLMYRDNFTCQYCSSR---E------NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA  228 (255)
Q Consensus       168 ~~R~~Vl~RD~~~CqYCG~~---~------~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnrtpeea  228 (255)
                      ..|-.++.+++++|+|||.+   .      .++||||+|+|+||.|+|+|+|++|..||+.|++++|.++
T Consensus       571 ~~k~~L~~~q~~~C~Y~g~~i~~~~l~~~~~~~iDHIiP~s~~~dds~~N~vl~~~~~N~~K~~~tp~e~  640 (805)
T TIGR01865       571 ILKLRLYYQQNGKCMYTGKEIDIDDLFDLSYYEIDHILPQSRSFDDSISNKVLVLASENQEKGDQTPYEA  640 (805)
T ss_pred             HHHHHHHHHcCCcCCCCCCcCccccccCCCCCceeeecccccCCCCcHHHHHHHhHHHHhhccCCCHHHH
Confidence            45778999999999999987   2      4789999999999999999999999999999999999986

CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.

>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ]

Probab=99.21  E-value=1.1e-12  Score=88.60  Aligned_cols=43  Identities=42%  Similarity=0.930  Sum_probs=31.8

Q ss_pred             ccccCCC----CCCccceEEeCcCCCCCchhhHHHhchhhhhhhcCC
Q 025258          181 CQYCSSR----ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK  223 (255)
Q Consensus       181 CqYCG~~----~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnr  223 (255)
                      |++||..    ..+++|||+|++.||.++++||+++|..||..|+++
T Consensus         1 C~~C~~~~~~~~~~~v~Hi~~~~~gg~~~~~Nl~~lC~~Ch~~k~~k   47 (47)
T PF01844_consen    1 CQYCGKPGSDNESLHVHHIIPRSKGGKNDLENLILLCPSCHRKKHDK   47 (47)
T ss_dssp             -TTT--B--GG-GEEEEESS-TTTT---STTTEEEEEHHHHHHHH--
T ss_pred             CCCCCCcCccCcceEeECcCchhcCCCCCHHHHHHHhHHHHHHhcCC
Confidence            8999987    468999999999999999999999999999999875

This family includes pyocins, colicins and anaredoxins.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity; PDB: 2QGP_C.

>TIGR02646 conserved hypothetical protein TIGR02646

Probab=98.97  E-value=4.7e-10  Score=93.78  Aligned_cols=79  Identities=18%  Similarity=0.286  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHCCCcccccCCC---CCCccceEEeCcCCCC--CchhhHHHhchh---------hhhhhcCCCHHHHhhhh
Q 025258          167 NLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGE--WKWENLVAACFK---------CNSRKGKKTLEEANMQL  232 (255)
Q Consensus       167 ~~~R~~Vl~RD~~~CqYCG~~---~~ltVDHIiP~S~GG~--~tweNLv~aC~~---------CN~~Kgnrtpeea~m~L  232 (255)
                      +.+|..++..++++|.||+..   ..++|||++|++..+.  .+|+||+++|..         ||..|++...... ..+
T Consensus        13 ~~i~~~L~~~~~~~C~YC~~~~~~~~~~ieH~~Pk~~~~~~~~~~~NL~~sC~~~n~~~~~~~Cn~~K~~~~~~~~-~~~   91 (144)
T TIGR02646        13 DEVHNQLLQLQGGLCAYCEREIELLGSHIEHFRPKGAYPPLTLDWSNLFGSCHRESKQGNPLHCGRFKDNSCGSNN-FDE   91 (144)
T ss_pred             HHHHHHHHHHhCCCcCccCCCcCCCCcceeeecccCCChhhhcChhhchhhccccCCCCCcccccccccccccccc-ccc
Confidence            468999999999999999984   6789999999998876  579999999999         8888865544322 344


Q ss_pred             ccCCCCCchHhHHH
Q 025258          233 SRVPKVLVRYLYHA  246 (255)
Q Consensus       233 l~~P~~P~~~~~~~  246 (255)
                      +..|..+...+++.
T Consensus        92 ~i~P~~~~~~~~f~  105 (144)
T TIGR02646        92 LIDPLADDCEQLFT  105 (144)
T ss_pred             ccCCCCCChHHhee
Confidence            55688777666553

Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins.

>PRK11295 hypothetical protein; Provisional

Probab=98.96  E-value=4.3e-10  Score=91.99  Aligned_cols=61  Identities=20%  Similarity=0.312  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHCCCcccccCCC------CCCccceEEeCcCCCCCchhhHHHhchhhhhhhcCCCHHH
Q 025258          167 NLSRKNLMYRDNFTCQYCSSR------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEE  227 (255)
Q Consensus       167 ~~~R~~Vl~RD~~~CqYCG~~------~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnrtpee  227 (255)
                      .-.|+.++.++.+.|+.|++.      ..++||||+|...|+.++.+||+++|..||..|+.+....
T Consensus        13 ~~~R~~~L~r~p~lC~~Cgr~~~~a~~~a~vVDHIip~~~gd~~D~sNLQ~LC~~CHn~kh~R~~~~   79 (113)
T PRK11295         13 SGYREKALKLYPWVCGRCSREFVYSNLRELTVHHIDHDHDNNPEDGSNWELLCLYCHDHEHSKYTEA   79 (113)
T ss_pred             HHHHHHHHHHCcchhhhhcChhccCCCCCceeeccCCCCCCCCCchhHHHHHhHHHHhHHHhhHHHh
Confidence            468999999999999999985      3579999999998988889999999999999998765543

>PF14279 HNH_5: HNH endonuclease

Probab=97.39  E-value=6.4e-05  Score=56.86  Aligned_cols=45  Identities=40%  Similarity=0.826  Sum_probs=37.5

Q ss_pred             ccccCCC---CCCccceEEeCcCCCCCchhhHHHhchhhhhhhcCCCHHHH
Q 025258          181 CQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA  228 (255)
Q Consensus       181 CqYCG~~---~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnrtpeea  228 (255)
                      |.||++.   ...+.+||+|-|.||...+.|   .|..||+.-|.....+.
T Consensus         1 Ci~C~~~~~~~~~s~EHIIP~sLGG~~~~~~---vC~~CN~~~g~~vD~~l   48 (71)
T PF14279_consen    1 CIYCNKEKSESNFSEEHIIPESLGGKLKINN---VCDKCNNKFGSKVDAEL   48 (71)
T ss_pred             CccCCCCCCccCCCccccCchhcCCcccccc---hhHHHhHHHhHHHHHHH
Confidence            8999987   345699999999999888877   89999999887665544

>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]

Probab=96.23  E-value=0.0018  Score=68.01  Aligned_cols=61  Identities=31%  Similarity=0.357  Sum_probs=53.8

Q ss_pred             HHHHHHHHCCCcccccCCC---------CCCccceEEeCcCCCCCchhhHHHhchhhhhhhcCCCHHHHh
Q 025258          169 SRKNLMYRDNFTCQYCSSR---------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEAN  229 (255)
Q Consensus       169 ~R~~Vl~RD~~~CqYCG~~---------~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnrtpeea~  229 (255)
                      .+-.++.-++++|.|-|+.         ...+||||+|.|+--.|+.+|.|..-..=|+-|||.+|-|+-
T Consensus       562 lKLrLY~~Q~gkcmYsgqei~I~rL~dk~~~eIDHi~P~Sr~~DDS~~NkVLv~s~~Nq~KgnqtP~e~~  631 (1088)
T COG3513         562 LKLRLYYLQNGKCMYSGQEIDIHRLSDKGYYEIDHIVPQSRTWDDSIDNKVLVLSSENQEKGNQTPYEEF  631 (1088)
T ss_pred             hHHHHHHHhcCcccccCcccchhhcccccceeeceeccccccccccccceeEEeccccccccCCCCHHHH
Confidence            3446788899999999986         248999999999999999999999999999999999987753

>PHA02565 49 recombination endonuclease VII; Provisional

Probab=96.03  E-value=0.0049  Score=53.34  Aligned_cols=55  Identities=18%  Similarity=0.290  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHCCCcccccCCC-----CCCccceEEeCcCCCCCchhh-HHHhchhhhhhhcCCC
Q 025258          167 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWEN-LVAACFKCNSRKGKKT  224 (255)
Q Consensus       167 ~~~R~~Vl~RD~~~CqYCG~~-----~~ltVDHIiP~S~GG~~tweN-Lv~aC~~CN~~Kgnrt  224 (255)
                      +..++++++.++++|+.|+.+     ..+++||..|.+.  ..+ .+ --.+|..||...|.-.
T Consensus         9 ~~~k~~l~e~Q~G~CaiC~~~l~~~~~~~~vDHDH~l~g--~~T-G~VRGLLC~~CN~~lG~~~   69 (157)
T PHA02565          9 KEEKQKLFEAQNGICPLCKRELDGDVSKNHLDHDHELNG--PNA-GRVRGLLCNLCNALEGQMK   69 (157)
T ss_pred             HHHHHHHHHHhCCcCCCCCCccCCCccccccCCCCCCCC--ccc-ccccccCchhhhhhhhhhh
Confidence            457889999999999999976     3579999987762  111 23 4579999999887764

>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon

Probab=95.65  E-value=0.0068  Score=42.72  Aligned_cols=44  Identities=32%  Similarity=0.523  Sum_probs=35.8

Q ss_pred             HHHHCCCcccccCCCCCCccceEEeCcCCCCCchhhHHHhchhhhhh
Q 025258          173 LMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR  219 (255)
Q Consensus       173 Vl~RD~~~CqYCG~~~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~  219 (255)
                      ++.|.+.+|..||....|.+-+|-|.+.|   .-+|-+.+|..|+.+
T Consensus         2 L~~Rs~~kCELC~a~~~L~vy~Vpp~~~~---~~d~~iliC~tC~~Q   45 (47)
T smart00782        2 LLARCESKCELCGSDSPLVVYAVPPSSDV---TADNSVMLCDTCHSQ   45 (47)
T ss_pred             hhHHcCCcccCcCCCCCceEEecCCCCCC---CccceeeechHHHHh
Confidence            57899999999998888998887665543   356779999999875

This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.

>COG3183 Predicted restriction endonuclease [Defense mechanisms]

Probab=95.15  E-value=0.018  Score=53.68  Aligned_cols=59  Identities=15%  Similarity=0.302  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHCCCcccccCCC----------CCCccceEEeCcCCC----CCchhhHHHhchhhhhhhcCCC
Q 025258          166 NNLSRKNLMYRDNFTCQYCSSR----------ENLTIDHVVPASRGG----EWKWENLVAACFKCNSRKGKKT  224 (255)
Q Consensus       166 ~~~~R~~Vl~RD~~~CqYCG~~----------~~ltVDHIiP~S~GG----~~tweNLv~aC~~CN~~Kgnrt  224 (255)
                      .+-.|++.+.-.+..|.-|+-.          ...+|||++|.+.-+    -+...-|+++|+.||..-.-+.
T Consensus       183 na~~ra~~Ia~~G~vC~vC~fdF~k~YGe~gKgyIeVHH~~piae~e~~~~vnp~tDL~plCpNCH~mvHrr~  255 (272)
T COG3183         183 NATLRAAAIAIHGTVCDVCEFDFQKKYGEIGKGYIEVHHKIPIAEFEGEYHVNPLTDLAPLCPNCHKMVHRRR  255 (272)
T ss_pred             ChHHHHHHHHHhCceeeecCccHHHHhhhhccCeEEEeeccchhhhcCccccCchhhhhhcCccHHHHHhccC
Confidence            5667888888888999999864          468999999998532    2677899999999998665443

>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap)

Probab=95.02  E-value=0.037  Score=49.29  Aligned_cols=79  Identities=18%  Similarity=0.318  Sum_probs=54.0

Q ss_pred             HHHHHHHHHC-CCcccccCCC--CCCccceEEeCcCCCC--CchhhHHHhchhhhhhhcCCCHH----------HHhhhh
Q 025258          168 LSRKNLMYRD-NFTCQYCSSR--ENLTIDHVVPASRGGE--WKWENLVAACFKCNSRKGKKTLE----------EANMQL  232 (255)
Q Consensus       168 ~~R~~Vl~RD-~~~CqYCG~~--~~ltVDHIiP~S~GG~--~tweNLv~aC~~CN~~Kgnrtpe----------ea~m~L  232 (255)
                      ...+.|..|| +..|..||..  ..++.-|...+..-..  -+..|+-..|..||..+++-..+          +.....
T Consensus        76 afn~~IR~RD~~~~CiSCG~~~~~~~dagHy~s~g~~~~lRF~~~N~~~qC~~CN~~~sgn~~~Yr~~Li~kiG~~~ve~  155 (189)
T PF05766_consen   76 AFNKYIRLRDAGKPCISCGRKHGGQWDAGHYRSRGAAPELRFNEDNIHAQCKHCNRHLSGNIVEYRIGLIEKIGQERVEW  155 (189)
T ss_pred             HHHHHHHHHhcCCCcccCCCcCCCCcccccccccccCcccccChhhHhHcCCccccccccCHHHHHHHHHHHHhHHHHHH
Confidence            4566777886 6799999986  5688999865532232  47899999999999999876433          223333


Q ss_pred             ccCCCCCchHhHHH
Q 025258          233 SRVPKVLVRYLYHA  246 (255)
Q Consensus       233 l~~P~~P~~~~~~~  246 (255)
                      |..|..|..++...
T Consensus       156 Le~~~~~~k~~~~e  169 (189)
T PF05766_consen  156 LEGPHEPRKWTIEE  169 (189)
T ss_pred             HhcCCCCCCCCHHH
Confidence            44666666554443

These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].

>PF13391 HNH_2: HNH endonuclease

Probab=94.45  E-value=0.011  Score=41.97  Aligned_cols=40  Identities=23%  Similarity=0.105  Sum_probs=32.9

Q ss_pred             ccccCCCC-----CCccceEEeCcCC--CCC-----------chhhHHHhchhhhhhh
Q 025258          181 CQYCSSRE-----NLTIDHVVPASRG--GEW-----------KWENLVAACFKCNSRK  220 (255)
Q Consensus       181 CqYCG~~~-----~ltVDHIiP~S~G--G~~-----------tweNLv~aC~~CN~~K  220 (255)
                      |..||...     .+++-||+|.+.+  +.+           +.+|..++|..+|..=
T Consensus         1 C~itg~~~~~~~~~~eaaHI~P~s~~~~~~~~~~~~~~~~~~~~~Ngl~L~~~lH~~f   58 (66)
T PF13391_consen    1 CVITGIRDPSPWELLEAAHIVPFSLGSWWMNNWFGEYANDWISPSNGLLLRPDLHKLF   58 (66)
T ss_pred             CcCCcCCcCCCCCcEEEEEcccCccCCCchhhhhhhhhccCCCccEEEEcCHhHHHHH
Confidence            77888665     6899999999987  445           7889999999999753

>COG3440 Predicted restriction endonuclease [Defense mechanisms]

Probab=93.57  E-value=0.032  Score=52.73  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=46.9

Q ss_pred             CCHHHHHHHHHHCCCcccccCCC-------CCCccceEEeCcCCCCCchhhHHHhchhhhhh
Q 025258          165 KNNLSRKNLMYRDNFTCQYCSSR-------ENLTIDHVVPASRGGEWKWENLVAACFKCNSR  219 (255)
Q Consensus       165 ~~~~~R~~Vl~RD~~~CqYCG~~-------~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~  219 (255)
                      .....|+.|+.--+++|+.||-.       ..+..-||.|...+|.+..-|-.++|...|..
T Consensus       179 rd~~fRk~V~~~Y~~RCalCG~e~~~~~~q~ii~~ahikp~~q~y~~~i~N~LaLC~nHh~~  240 (301)
T COG3440         179 RDGAFRKIVLRQYDYRCALCGLEVLDFLEQNIIKAAHIKPFQQFYPDRIINGLALCKNHHWA  240 (301)
T ss_pred             hhHHHHHHHHHHhcchhhhhcchhhhhhHHHHhhhhhcCcccccCcccccccchhchhhHHH
Confidence            35678999999999999999943       34566799999999999999999999888763

>PF06147 DUF968: Protein of unknown function (DUF968); InterPro: IPR010373 This is a family of uncharacterised prophage proteins that are also found in bacteria and humans

Probab=92.73  E-value=0.18  Score=44.82  Aligned_cols=54  Identities=13%  Similarity=0.237  Sum_probs=39.9

Q ss_pred             CCCcccccCCCCCCccceEEeCcCCCC---CchhhHHHhchhhhhhhcCCCHHHHhhhh
Q 025258          177 DNFTCQYCSSRENLTIDHVVPASRGGE---WKWENLVAACFKCNSRKGKKTLEEANMQL  232 (255)
Q Consensus       177 D~~~CqYCG~~~~ltVDHIiP~S~GG~---~tweNLv~aC~~CN~~Kgnrtpeea~m~L  232 (255)
                      -.-.|..||++ .-.++|++..-.||.   ..-..++++|+.||+...+ ..+.+.-+-
T Consensus       126 ~~~~C~iCGk~-~~d~hH~iG~g~~~~~~~~~d~~~ipLCr~hH~e~H~-g~~~Fe~ky  182 (200)
T PF06147_consen  126 KSRPCVICGKP-PADIHHIIGMGRGRMGIKHHDLFVIPLCREHHRELHR-GRKAFEQKY  182 (200)
T ss_pred             ccCccccCCCC-ccccceeeccccCccccccCCCeehhccHHHHHHHhC-CHHHHHHHh
Confidence            34589999976 348999976655543   4567899999999999888 666655444

>TIGR02986 restrict_Alw26I type II restriction endonuclease, Alw26I/Eco31I/Esp3I family

Probab=92.13  E-value=0.06  Score=52.80  Aligned_cols=47  Identities=26%  Similarity=0.395  Sum_probs=38.8

Q ss_pred             CcccccCCC-CCCccceEEeCcCCCCCchhhHHHhchhhhhhhcCCCHH
Q 025258          179 FTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLE  226 (255)
Q Consensus       179 ~~CqYCG~~-~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnrtpe  226 (255)
                      -.|+.|+.. ..+..|||-|.|.|-.+... .+++|..||+.|.+|.--
T Consensus       245 ~~~~~~~~~p~~~saDHIGPISlGF~h~P~-Fqplc~~cNSaKnnR~~l  292 (424)
T TIGR02986       245 CSIPECCKHPEKISADHIGPISLGFVHDPR-FQPLCSSCNSAKNDRLTL  292 (424)
T ss_pred             ccCcccccCCCCCCccccCCcccccccCcc-ccccccccccccccceeH
Confidence            356678765 77999999999999887764 499999999999998543

Members of this family are type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family. Characterized specificities of three members are GGTCTC, CGTCTC, and the shared subsequence GTCTC.

>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family

Probab=91.30  E-value=0.1  Score=53.78  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=28.5

Q ss_pred             HHHHCCCcccccCCC--CCCccceEEeCcCCCC------CchhhHH
Q 025258          173 LMYRDNFTCQYCSSR--ENLTIDHVVPASRGGE------WKWENLV  210 (255)
Q Consensus       173 Vl~RD~~~CqYCG~~--~~ltVDHIiP~S~GG~------~tweNLv  210 (255)
                      |..-..+.|+|||..  ..-++|||+|+|.-+.      ++..||.
T Consensus       755 Ik~fs~gIcpY~Ga~iG~~gEiDHI~PRSht~k~ygtvFN~E~NLI  800 (802)
T TIGR03031       755 IKNFSMGICPYKGASIGGQGEIDHIYPRSHSKKHYGTIFNSEVNLI  800 (802)
T ss_pred             HHHHhccCCCCCCCCCCCcccccccccccccccccceeecCcccee
Confidence            444457899999987  5679999999998654      3455654

Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.

>PF09665 RE_Alw26IDE: Type II restriction endonuclease (RE_Alw26IDE); InterPro: IPR014328 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=86.91  E-value=0.19  Score=50.32  Aligned_cols=48  Identities=29%  Similarity=0.510  Sum_probs=38.1

Q ss_pred             Ccccc--cCCC-CCCccceEEeCcCCCCCchhhHHHhchhhhhhhcCCCHHH
Q 025258          179 FTCQY--CSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEE  227 (255)
Q Consensus       179 ~~CqY--CG~~-~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnrtpee  227 (255)
                      +.|+.  |++. .-+..|||-|.|.|-.+... .+++|..||+.|.+|.--.
T Consensus       243 G~~~~~~~~~~~~~~SaDHIGPISlGF~h~P~-Fqplc~~cNSaKnnR~~ls  293 (511)
T PF09665_consen  243 GLCRFPNCGKEEECLSADHIGPISLGFVHRPR-FQPLCKSCNSAKNNRMYLS  293 (511)
T ss_pred             CcccCCchhhhccccCccccCCcccccccCcc-ccccccccccccccceeHH
Confidence            55653  6654 56899999999999887765 4999999999999986443

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family [], whose recognition sequences are 5'-GTCTC-3' (Alw26I), 5'-GGTCTC-3' (Eco31I) and 5'-CGTCTC-3' (Esp3I).

>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria

Probab=82.08  E-value=7.4  Score=29.73  Aligned_cols=56  Identities=20%  Similarity=0.255  Sum_probs=38.6

Q ss_pred             ccccceEEEEcCCcceeeeeeHHHHHHHHHcCceeEEeecCCeeeCCCcceecCcEEEEecceeh
Q 025258           94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV  158 (255)
Q Consensus        94 ~l~~~~vLvLn~sy~Pl~~is~qrAi~l~~~gkAevl~~~~~~vrS~s~~~~vPsVIrL~~yv~~  158 (255)
                      .+....|.|+|..++.+++++..+|+.+.-.-..+.|+..      ++..   |.|.+|..|-+.
T Consensus         9 ~I~~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~------~~~~---PPVcKi~dy~k~   64 (76)
T PF05198_consen    9 EIRAPEVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVS------PNAD---PPVCKIMDYGKY   64 (76)
T ss_dssp             G---SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEE------TTSS---S-EEEEE-HHHH
T ss_pred             CcCCCEEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEc------CCCC---CCeEEEechHHH
Confidence            4567789999999999999999999999888888888753      3333   788888776433

IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	255
4h9d_A	112	Crystal Structure Of Mn-Dependent Gme Hnh Nicking E		3e-05

>pdb|4H9D|A Chain A, Crystal Structure Of Mn-Dependent Gme Hnh Nicking Endonuclease From Geobacter Metallireducens Gs-15, Northeast Structural Genomics Consortium (Nesg) Target Gmr87 Length = 112

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFT---CQYCSS---RENLTIDHVVPASRGGEWKWENLV 210
           Q VKR + K    R++  +++      C YC      E LT DH+VP  RGG+    N+V
Sbjct: 11  QEVKREKEKARELRRSQWWKNRIARGICHYCGEIFPPEELTXDHLVPVVRGGKSTRGNVV 70
Query: 211 AACFKCNSRK 220
            AC +CN+RK
Sbjct: 71  PACKECNNRK 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
2qgp_A	112	HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, stru	3e-36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
2qgp_A	112	HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, stru	99.53
1e7l_A	157	GP49, recombination endonuclease VII; resolvase, h	95.83
3m7k_A	142	Restriction endonuclease PACI; HNH restriction end	95.61

>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*

Probab=95.83  E-value=0.0032  Score=53.32  Aligned_cols=55  Identities=16%  Similarity=0.343  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHCCCcccccCCC-----CCCccceEEeCcCCCCCchhhHH-HhchhhhhhhcCCC
Q 025258          167 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWENLV-AACFKCNSRKGKKT  224 (255)
Q Consensus       167 ~~~R~~Vl~RD~~~CqYCG~~-----~~ltVDHIiP~S~GG~~tweNLv-~aC~~CN~~Kgnrt  224 (255)
                      +..++.+++.++++|+.|+.+     ..+++||-.+..  |..+ .++. ++|..||...|...
T Consensus         9 ~~~~~~l~~~Q~g~C~IC~~~l~~~~~~~~vDHdH~~~--g~~t-G~VRGlLC~~CN~~lG~~~   69 (157)
T 1e7l_A            9 KEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELN--GPKA-GKVRGLLCNLCDAAEGQMK   69 (157)
T ss_dssp             HHHHHHHHHHTTTBCTTTCCBCCSSGGGSEEEECCCCS--STTT-TBEEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcCcccCCccccccccccccCCCCCC--CCCC-CcchhhccHhHhchhcccc
Confidence            357889999999999999986     467999997665  2222 3666 89999999865543

>3m7k_A Restriction endonuclease PACI; HNH restriction endonuclease, beta-BETA-alpha-metal active S base-PAIR RARE cutter; HET: DNA; 1.92A {Pseudomonas alcaligenes} PDB: 3ldy_A*

Probab=95.61  E-value=0.0039  Score=51.67  Aligned_cols=52  Identities=25%  Similarity=0.365  Sum_probs=36.6

Q ss_pred             HHHH-HCCCcccccCCC-----------------CCCccceEEeCcCCCCCchhhHHHhchhhhhhhcCCCHH
Q 025258          172 NLMY-RDNFTCQYCSSR-----------------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLE  226 (255)
Q Consensus       172 ~Vl~-RD~~~CqYCG~~-----------------~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnrtpe  226 (255)
                      ..+. ++.-.|-|||-.                 ..|+||..  .+. -..+.+||+.||..||+.|+++.-.
T Consensus        53 ~WY~~~q~k~C~YCgite~~~k~L~k~k~Rg~~~~~LeIeR~--~~~-~~Ys~dNLaLAC~~CNnaKsdk~ta  122 (142)
T 3m7k_A           53 AWYGLSAQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDRS--DSF-EGYSPQNARLACFICNRIKSNIFSA  122 (142)
T ss_dssp             HHHCCGGGCBCTTTCCBHHHHHTTTCBCTTSCBCCSCEEEES--STT-SCBCTTTEEEECHHHHHHHTTTSCH
T ss_pred             HHHccCCCCceeeecccHHHHHHHhhccCCCccccceEEecc--CCc-cccCHHHHHHHHHHHhccccccccc
Confidence            4555 677899999964                 12555542  111 2246999999999999999998744

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1e7la2	103	Recombination endonuclease VII, N-terminal domain	86.56

>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: Recombination endonuclease VII, N-terminal domain
domain: Recombination endonuclease VII, N-terminal domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=86.56  E-value=0.19  Score=37.71  Aligned_cols=55  Identities=16%  Similarity=0.254  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHCCCcccccCCC-----CCCccceEEeCcCCCCCchhhHHHhchhhhhhhcCC
Q 025258          167 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK  223 (255)
Q Consensus       167 ~~~R~~Vl~RD~~~CqYCG~~-----~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnr  223 (255)
                      +..++++++.++++|+.||.+     ..+.|||-.-....+.-..  =-.+|..||..-|-.
T Consensus         9 ~ee~~~l~~~Q~g~C~IC~~~~~~~~~~~~vDHdH~~~~~~TG~V--RGlLC~~CN~~lG~~   68 (103)
T d1e7la2           9 KEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELNGPKAGKV--RGLLCNLCDAAEGQM   68 (103)
T ss_dssp             HHHHHHHHHHTTTBCTTTCCBCCSSGGGSEEEECCCCSSTTTTBE--EEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcCCCCCCCcccccccceeeccccccCCCCCce--eeecchHHhHhhccc
Confidence            456789999999999999976     3578888642210000001  126899999876543