Citrus Sinensis ID: 025265

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYT
ccccccccccccccccEEccccccccccccccccHHHHHHHHcccccccccccEEEEEcccccccEEEEEEEEEcccccEEEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEEEcccccccccEEEEcEEccccccccccccEEEEccccccHHHHHHHcccccccEEEEEccccccEEEEEccccccccccEEEccccccc
cccccccccccccHHHHHHccHHHHccccHHHHHHHHHHHcccccccccccccEEcccccccccccEEEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccccccccccccHHHHHcccccccccccccccEEEEEEEcccccccEEEEEEEEEEccccccccccEEEEcccccccccccccccEEEEcccccccHHHHHHHccccccEEEEEEccccccEEEEccccccccccEEEccccccc
mqgsmfpfgstlpseafvrlpdrsfhfqpvpgrlswsrnYAAKGIKFICACSSLLFqvhgnvyptgyynvtmyigqparpyfldldtgsdltwlqcdapcvrcveaphplyrpsndlvpcedpicaslhapghhncedpaqcdyeleyadggsslgVLVKDAfafnytngqrlnprlalgcgynqvpgasyhpldgilglgkgkssIVSQLHSQKLIRNVVGhclsgggggflffgddlydssRVVWTSMSSDYT
mqgsmfpfgstLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYT
MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHClsgggggflffgddlydssRVVWTSMSSDYT
***************AFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHC*******************************
***S*********************************************************VYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEA***********VPCEDPICASLHA*****CEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVW*SMS****
MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYT
******P*GSTLPSEAFVRLPDRSFHFQP*P***SWSRNYA**********SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMS****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query255 2.2.26 [Sep-21-2011]
Q0IU52 410 Aspartic proteinase Asp1 no no 0.768 0.478 0.485 5e-49
A2ZC67 410 Aspartic proteinase Asp1 N/A no 0.776 0.482 0.490 1e-48
Q9S9K4 475 Aspartic proteinase-like no no 0.725 0.389 0.284 2e-16
Q766C3 437 Aspartic proteinase nepen N/A no 0.584 0.340 0.329 7e-15
Q766C2 438 Aspartic proteinase nepen N/A no 0.513 0.299 0.329 3e-14
Q9LX20 528 Aspartic proteinase-like no no 0.623 0.301 0.304 5e-13
Q9LS40 500 Protein ASPARTIC PROTEASE no no 0.470 0.24 0.318 1e-12
Q9LHE3 470 Protein ASPARTIC PROTEASE no no 0.466 0.253 0.295 4e-10
Q3EBM5 447 Probable aspartic proteas no no 0.466 0.266 0.296 5e-09
Q6XBF8 437 Aspartic proteinase CDR1 no no 0.466 0.272 0.301 1e-08
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function desciption
 Score =  194 bits (493), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 104/214 (48%), Positives = 140/214 (65%), Gaps = 18/214 (8%)

Query: 52  SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY 111
           S+++ ++HGNVYP G++ +TM IG PA+ YFLD+DTGS LTWLQCDAPC  C   PH LY
Sbjct: 22  SAVVLELHGNVYPIGHFFITMNIGDPAKSYFLDIDTGSTLTWLQCDAPCTNCNIVPHVLY 81

Query: 112 RPS-NDLVPCEDPICASLHAP--GHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYT 168
           +P+   LV C D +C  L+        C    QCDY ++Y D  SS+GVLV D F+ + +
Sbjct: 82  KPTPKKLVTCADSLCTDLYTDLGKPKRCGSQKQCDYVIQYVD-SSSMGVLVIDRFSLSAS 140

Query: 169 NGQRLNP-RLALGCGYNQ------VPGASYHPLDGILGLGKGKSSIVSQLHSQKLI-RNV 220
           NG   NP  +A GCGY+Q      VP     P+D ILGL +GK +++SQL SQ +I ++V
Sbjct: 141 NGT--NPTTIAFGCGYDQGKKNRNVP----IPVDSILGLSRGKVTLLSQLKSQGVITKHV 194

Query: 221 VGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDY 254
           +GHC+S  GGGFLFFGD    +S V WT M+ ++
Sbjct: 195 LGHCISSKGGGFLFFGDAQVPTSGVTWTPMNREH 228

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
297798582 425 hypothetical protein ARALYDRAFT_328390 [ 0.854 0.512 0.712 3e-90
334187133 425 aspartyl protease family protein [Arabid 0.854 0.512 0.712 4e-90
79495937 401 aspartyl protease family protein [Arabid 0.854 0.543 0.712 6e-90
26452545 413 putative nucellin [Arabidopsis thaliana] 0.854 0.527 0.712 8e-90
4490316 420 nucellin-like protein [Arabidopsis thali 0.827 0.502 0.721 8e-90
312282457 424 unnamed protein product [Thellungiella h 0.815 0.490 0.736 2e-89
225438361 426 PREDICTED: aspartic proteinase Asp1 [Vit 0.788 0.471 0.772 2e-88
147802609 424 hypothetical protein VITISV_037997 [Viti 0.788 0.474 0.752 1e-84
255563835 433 nucellin, putative [Ricinus communis] gi 0.803 0.473 0.770 4e-84
56692305 426 nucellin-like protein [Daucus carota] 0.768 0.460 0.705 1e-80
>gi|297798582|ref|XP_002867175.1| hypothetical protein ARALYDRAFT_328390 [Arabidopsis lyrata subsp. lyrata] gi|297313011|gb|EFH43434.1| hypothetical protein ARALYDRAFT_328390 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 156/219 (71%), Positives = 182/219 (83%), Gaps = 1/219 (0%)

Query: 38  RNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97
           R  A    +F  A SS++F VHGNVYP GYYNVT+ IGQP RPY+LDLDTGSDLTWLQCD
Sbjct: 30  RKTAGFSDRFTRAVSSVVFPVHGNVYPLGYYNVTINIGQPPRPYYLDLDTGSDLTWLQCD 89

Query: 98  APCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGV 157
           APCVRC+EAPHPLY+PS+DL+PC DP+C +LH   +  CE P QCDYE+EYADGGSSLGV
Sbjct: 90  APCVRCLEAPHPLYQPSSDLIPCNDPLCKALHLNSNQRCETPEQCDYEVEYADGGSSLGV 149

Query: 158 LVKDAFAFNYTNGQRLNPRLALGCGYNQVPGA-SYHPLDGILGLGKGKSSIVSQLHSQKL 216
           LV+D F+ NYT G RL PRLALGCGY+Q+PGA S+HPLDG+LGLG+GK SI+SQLHSQ  
Sbjct: 150 LVRDVFSMNYTKGLRLTPRLALGCGYDQIPGASSHHPLDGVLGLGRGKVSILSQLHSQGY 209

Query: 217 IRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYT 255
           ++NV+GHCLS  GGG LFFGDDLYDSSRV WT MS +Y+
Sbjct: 210 VKNVIGHCLSSLGGGILFFGDDLYDSSRVSWTPMSREYS 248

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|334187133|ref|NP_001190905.1| aspartyl protease family protein [Arabidopsis thaliana] gi|21592493|gb|AAM64443.1| nucellin-like protein [Arabidopsis thaliana] gi|332660834|gb|AEE86234.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79495937|ref|NP_567922.2| aspartyl protease family protein [Arabidopsis thaliana] gi|332660833|gb|AEE86233.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26452545|dbj|BAC43357.1| putative nucellin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4490316|emb|CAB38807.1| nucellin-like protein [Arabidopsis thaliana] gi|7270297|emb|CAB80066.1| nucellin-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312282457|dbj|BAJ34094.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|225438361|ref|XP_002273988.1| PREDICTED: aspartic proteinase Asp1 [Vitis vinifera] gi|296082608|emb|CBI21613.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147802609|emb|CAN73001.1| hypothetical protein VITISV_037997 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563835|ref|XP_002522918.1| nucellin, putative [Ricinus communis] gi|223537845|gb|EEF39461.1| nucellin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|56692305|dbj|BAD80835.1| nucellin-like protein [Daucus carota] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
TAIR|locus:2205861 405 AT1G44130 [Arabidopsis thalian 0.788 0.496 0.460 1.2e-47
TAIR|locus:2204725 466 AT1G77480 [Arabidopsis thalian 0.792 0.433 0.424 8.4e-42
TAIR|locus:2028466 583 AT1G49050 [Arabidopsis thalian 0.674 0.295 0.455 1.1e-36
TAIR|locus:2075512 488 AT3G02740 [Arabidopsis thalian 0.611 0.319 0.341 1e-19
TAIR|locus:2198753 485 AT1G05840 [Arabidopsis thalian 0.619 0.325 0.331 1.7e-19
TAIR|locus:505006268 458 AT2G23945 [Arabidopsis thalian 0.603 0.336 0.365 1.8e-18
TAIR|locus:2183617 482 AT5G36260 [Arabidopsis thalian 0.611 0.323 0.321 4.4e-18
TAIR|locus:2102335 452 AT3G25700 [Arabidopsis thalian 0.6 0.338 0.333 6e-18
TAIR|locus:2056916 461 AT2G03200 [Arabidopsis thalian 0.572 0.316 0.351 6.4e-18
TAIR|locus:2083098 632 AT3G50050 [Arabidopsis thalian 0.623 0.251 0.329 8.1e-18
TAIR|locus:2205861 AT1G44130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 94/204 (46%), Positives = 124/204 (60%)

Query:    52 SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY 111
             SS++F + GNV+P GYY+V M IG P + +  D+DTGSDLTW+QCDAPC  C   P+  Y
Sbjct:    33 SSVVFPLSGNVFPLGYYSVLMQIGSPPKAFQFDIDTGSDLTWVQCDAPCSGCTLPPNLQY 92

Query:   112 RPSNDLVPCEDPICASLHAPGHHNCEDPA-QCDYELEYADGGSSLGVLVKDAFAFNYTNG 170
             +P  +++PC +PIC +LH P   +C +P  QCDYE++YAD GSS+G LV D F     NG
Sbjct:    93 KPKGNIIPCSNPICTALHWPNKPHCPNPQEQCDYEVKYADQGSSMGALVTDQFPLKLVNG 152

Query:   171 QRLNPRLALGCGYNQ-VPGASYHPLD-GILGLGKGKSSIVSQLHSQKLIRNVVGHCXXXX 228
               + P +A GCGY+Q  P A   P   G+LGLG+GK  +++QL S  L RNVVGHC    
Sbjct:   153 SFMQPPVAFGCGYDQSYPSAHPPPATAGVLGLGRGKIGLLTQLVSAGLTRNVVGHCLSSK 212

Query:   229 XXXXXXXXXXXXXXXRVVWTSMSS 252
                             V WT + S
Sbjct:   213 GGGFLFFGDNLVPSIGVAWTPLLS 236
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2204725 AT1G77480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028466 AT1G49050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006268 AT2G23945 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183617 AT5G36260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102335 AT3G25700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083098 AT3G50050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
cd05475 273 cd05475, nucellin_like, Nucellins, plant aspartic 3e-80
cd05476 265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 4e-33
cd05471 283 cd05471, pepsin_like, Pepsin-like aspartic proteas 5e-27
cd05472 299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-23
PLN03146 431 PLN03146, PLN03146, aspartyl protease family prote 9e-21
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 4e-19
cd05489 362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 5e-07
pfam00026 316 pfam00026, Asp, Eukaryotic aspartyl protease 5e-06
cd06096 326 cd06096, Plasmepsin_5, Plasmepsins are a class of 2e-05
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information 
 Score =  242 bits (619), Expect = 3e-80
 Identities = 101/190 (53%), Positives = 115/190 (60%), Gaps = 39/190 (20%)

Query: 66  GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPIC 125
           GYY VT+ IG P +PYFLD+DTGSDLTWLQCDAPC  C                      
Sbjct: 1   GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC---------------------- 38

Query: 126 ASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQ 185
                          QCDYE+EYADGGSS+GVLV D F+   TNG R  PR+A GCGY+Q
Sbjct: 39  ---------------QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQ 83

Query: 186 VPGA--SYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSS 243
                    P DGILGLG+GK S+ SQL SQ +I+NV+GHCLS  GGGFLFFGDDL  SS
Sbjct: 84  QGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGGFLFFGDDLVPSS 143

Query: 244 RVVWTSMSSD 253
            V WT M  +
Sbjct: 144 GVTWTPMRRE 153

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. Length = 273
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 255
PLN03146 431 aspartyl protease family protein; Provisional 100.0
KOG1339 398 consensus Aspartyl protease [Posttranslational mod 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 100.0
cd05475 273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd06096 326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05478 317 pepsin_A Pepsin A, aspartic protease produced in g 99.97
cd05490 325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 99.97
cd05477 318 gastricsin Gastricsins, asparate proteases produce 99.97
PTZ00165 482 aspartyl protease; Provisional 99.97
cd06097 278 Aspergillopepsin_like Aspergillopepsin_like, aspar 99.97
cd05488 320 Proteinase_A_fungi Fungal Proteinase A , aspartic 99.97
cd06098 317 phytepsin Phytepsin, a plant homolog of mammalian 99.97
cd05486 316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 99.97
PTZ00147 453 plasmepsin-1; Provisional 99.97
cd05472 299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 99.97
cd05485 329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 99.97
cd05471 283 pepsin_like Pepsin-like aspartic proteases, biloba 99.96
cd05489 362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 99.96
PTZ00013 450 plasmepsin 4 (PM4); Provisional 99.96
cd05487 326 renin_like Renin stimulates production of angioten 99.96
cd05476 265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 99.95
cd05473 364 beta_secretase_like Beta-secretase, aspartic-acid 99.95
cd05474 295 SAP_like SAPs, pepsin-like proteinases secreted fr 99.93
PF00026 317 Asp: Eukaryotic aspartyl protease The Prosite entr 99.92
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.89
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.54
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 92.57
PF1365090 Asp_protease_2: Aspartyl protease 92.12
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 87.68
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 80.43
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.3e-38  Score=298.02  Aligned_cols=184  Identities=35%  Similarity=0.642  Sum_probs=153.8

Q ss_pred             CCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCC----CCCCCCcccccCCCCCCCCCCCC
Q 025265           64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDP  139 (255)
Q Consensus        64 ~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S----~v~C~s~~C~~~~~~~~~~C~~~  139 (255)
                      .+++|+++|.||||||++.|++||||+++||+|. +|..|..+.++.|+|++|    .++|.++.|..+..  ...|..+
T Consensus        81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~  157 (431)
T PLN03146         81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDE  157 (431)
T ss_pred             CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCCC
Confidence            4789999999999999999999999999999999 999999888999999998    38999999987653  2347655


Q ss_pred             CCceeeeecCCCceEeEEEEEEEEEEeecCCC-cCCCceEEeeeEecCCCCCCCCcceEEeeCCCCCchHHHhhhcCCcc
Q 025265          140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQ-RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR  218 (255)
Q Consensus       140 ~~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~-~~~~~~~fGc~~~~~~~~~~~~~dGIlGLg~~~~Sl~~ql~~~g~i~  218 (255)
                      +.|.|.+.|+||+.+.|.+++|+|+|+...+. ..++++.|||++++ .+......+||||||++++|+++||...  +.
T Consensus       158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~-~g~f~~~~~GilGLG~~~~Sl~sql~~~--~~  234 (431)
T PLN03146        158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNN-GGTFDEKGSGIVGLGGGPLSLISQLGSS--IG  234 (431)
T ss_pred             CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCC-CCCccCCCceeEecCCCCccHHHHhhHh--hC
Confidence            67999999999988899999999999753322 35789999999886 3322235899999999999999999864  56


Q ss_pred             ceEEEecCC-----CCCeEEEECCCCCCC-CCeEEEECccC
Q 025265          219 NVVGHCLSG-----GGGGFLFFGDDLYDS-SRVVWTSMSSD  253 (255)
Q Consensus       219 ~~FS~cL~~-----~~~G~l~fG~~~~~~-~~l~~tPli~~  253 (255)
                      ++|||||.+     ...|.|+||+...+. ..+.||||+.+
T Consensus       235 ~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~  275 (431)
T PLN03146        235 GKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSK  275 (431)
T ss_pred             CcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccC
Confidence            799999963     247999999865443 45999999864

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
1uh7_A 325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 5e-04
3apr_E 325 Binding Of A Reduced Peptide Inhibitor To The Aspar 5e-04
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure 
Iteration: 1

 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 31/153 (20%)
Query: 72  MYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAP 131
           + IG P + + LD DTGS   W+     C  C  +    Y P+           ++  A 
Sbjct: 21  VTIGTPGKKFNLDFDTGSSDLWI-ASTLCTNC-GSRQTKYDPNQ---------SSTYQAD 69
Query: 132 GHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASY 191
           G           + + Y DG S+ G+L KD    N   G  L     +     +    + 
Sbjct: 70  GRT---------WSISYGDGSSASGILAKD----NVNLGGLLIKGQTIELAKREAASFAS 116
Query: 192 HPLDGILGLG-------KGKSSIVSQLHSQKLI 217
            P DG+LGLG       +G  + +  L SQ LI
Sbjct: 117 GPNDGLLGLGFDTITTVRGVKTPMDNLISQGLI 149
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
3aup_A 403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 4e-41
3vla_A 413 EDGP; extracellular, inhibitor, plant protein; HET 5e-39
1t6e_X 381 Xylanase inhibitor; two beta-barrel domain structu 6e-35
1j71_A 334 Candidapepsin, aspartic proteinase; candida tropic 1e-06
2qzx_A 342 Candidapepsin-5; aspartic proteinase, aspartyl pro 2e-06
3pvk_A 342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 8e-06
2apr_A 325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 8e-06
1ibq_A 325 Aspergillopepsin; aspartic proteinase, hydrolase; 2e-05
1oew_A 329 Endothiapepsin; hydrolase, aspartic proteinase mec 2e-05
1bxo_A 323 Protein (penicillopepsin); hydrolase, phosphonate 3e-05
3c9x_A 329 Trichoderma reesei aspartic protease; aspartic pro 5e-05
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 6e-05
2bju_A 453 Plasmepsin II; aspartic proteinase, drug design, m 2e-04
3qvc_A 451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 2e-04
3psg_A 370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 3e-04
2ewy_A 383 Beta-secretase 2; BACE2, aspartic protease, hydrol 3e-04
2qp8_A 395 Beta-secretase 1; BACE1, protease, alternative spl 3e-04
1am5_A 324 Pepsin, acid proteinase; aspartyl protease, hydrol 3e-04
3fv3_A 339 SAPP1P-secreted aspartic protease 1; secreted aspa 4e-04
1tzs_A 351 Cathepsin E; hydrolase, aspartic protease, activat 4e-04
1miq_A 375 Plasmepsin; aspartic proteinase zymogen, domain op 5e-04
1mpp_A 361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 7e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  144 bits (364), Expect = 4e-41
 Identities = 37/216 (17%), Positives = 65/216 (30%), Gaps = 21/216 (9%)

Query: 52  SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY 111
           + ++  V  +   TG +   +    P     + +D   +  W+ C+           P  
Sbjct: 8   NLVVLPVQND-GSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCE-QQYSSKTYQAPFC 65

Query: 112 RPSN----DLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNY 167
             +     +   C     AS        C                + LG L +D  A + 
Sbjct: 66  HSTQCSRANTHQCLSCPAASR-----PGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHA 120

Query: 168 TNGQRLN-------PRLALGCGYNQVPGASYHP-LDGILGLGKGKSSIVSQLHSQKLIRN 219
           T G           P+    C  + +          G+ GLG    S+ +QL S   ++ 
Sbjct: 121 TQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQR 180

Query: 220 VVGHCLSG--GGGGFLFFGDDLYDSSRVVWTSMSSD 253
               CLS      G + FGD   +  +     +  D
Sbjct: 181 QFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHD 216
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
3vla_A 413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A 403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
2apr_A 325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1t6e_X 381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1mpp_A 361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3c9x_A 329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
3psg_A 370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1oew_A 329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1tzs_A 351 Cathepsin E; hydrolase, aspartic protease, activat 99.98
2x0b_A 383 Renin; hydrolase-hormone complex, hydrolase hormon 99.98
1am5_A 324 Pepsin, acid proteinase; aspartyl protease, hydrol 99.98
3cms_A 323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 99.98
3k1w_A 341 Renin; protease, alternative splicing, aspartyl pr 99.97
1j71_A 334 Candidapepsin, aspartic proteinase; candida tropic 99.97
3fv3_A 339 SAPP1P-secreted aspartic protease 1; secreted aspa 99.97
1dpj_A 329 Proteinase A; proteinase A, hydrolase-hydrolase in 99.97
2qzx_A 342 Candidapepsin-5; aspartic proteinase, aspartyl pro 99.97
4aa9_A 320 Chymosin; hydrolase, aspartic peptidase, rennet; H 99.97
1htr_B 329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 99.97
3pvk_A 342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 99.97
2bju_A 453 Plasmepsin II; aspartic proteinase, drug design, m 99.97
1miq_A 375 Plasmepsin; aspartic proteinase zymogen, domain op 99.97
1ibq_A 325 Aspergillopepsin; aspartic proteinase, hydrolase; 99.97
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 99.97
1wkr_A 340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 99.97
1izd_A 323 Aspartic proteinase; sugar binding, acid protease, 99.97
3qvc_A 451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 99.97
1bxo_A 323 Protein (penicillopepsin); hydrolase, phosphonate 99.97
1yg9_A 330 Aspartic protease BLA G 2; allegren, hydrolase, al 99.96
2ewy_A 383 Beta-secretase 2; BACE2, aspartic protease, hydrol 99.96
2qp8_A 395 Beta-secretase 1; BACE1, protease, alternative spl 99.96
3vf3_A 402 Beta-secretase 1; structure-based drug design, hyd 99.95
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 99.95
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.85
1lya_B 241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.28
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=2.9e-38  Score=294.60  Aligned_cols=192  Identities=24%  Similarity=0.418  Sum_probs=157.6

Q ss_pred             CCceEEeeecCCCCCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCC
Q 025265           51 CSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHA  130 (255)
Q Consensus        51 ~s~~~~p~~~~~~~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~  130 (255)
                      .+++++|++++. .+++|+++|+||||||++.|+|||||+++||+|. +|.     ....|.+    +.|.++.|.....
T Consensus         6 ~~~~~~pv~~d~-~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~-~c~-----~Sst~~~----v~C~s~~C~~~~~   74 (413)
T 3vla_A            6 PSALVVPVKKDA-STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD-QNY-----VSSTYRP----VRCRTSQCSLSGS   74 (413)
T ss_dssp             CSEEEEEEEECT-TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS-SSC-----CCTTCEE----CBTTSHHHHHTTC
T ss_pred             CccEEEEeeecC-CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccC-CCC-----CCCCcCc----cCCCccccccccc
Confidence            467899999884 6899999999999999999999999999999998 662     1233443    8999999998765


Q ss_pred             CCCC--------CCCCCCCceeeeec-CCCceEeEEEEEEEEEEeecCCC-----cCCCceEEeeeEecCCCCCCCCcce
Q 025265          131 PGHH--------NCEDPAQCDYELEY-ADGGSSLGVLVKDAFAFNYTNGQ-----RLNPRLALGCGYNQVPGASYHPLDG  196 (255)
Q Consensus       131 ~~~~--------~C~~~~~c~~~~~Y-~dgs~~~G~l~~Dtl~l~~~~g~-----~~~~~~~fGc~~~~~~~~~~~~~dG  196 (255)
                      +.+.        .|. .+.|.|.+.| +|++.+.|.|++|+|+|+.++|.     +.+++++|||++++.........||
T Consensus        75 ~~~~~c~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~~dG  153 (413)
T 3vla_A           75 IACGDCFNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVG  153 (413)
T ss_dssp             CEEECCSSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTTCCE
T ss_pred             CCCcccccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCccccccc
Confidence            4322        343 3679999999 58888999999999999876654     4568999999987521123467899


Q ss_pred             EEeeCCCCCchHHHhhhcCCccceEEEecCC--CCCeEEEECCCCC-------CCCC-eEEEECccCC
Q 025265          197 ILGLGKGKSSIVSQLHSQKLIRNVVGHCLSG--GGGGFLFFGDDLY-------DSSR-VVWTSMSSDY  254 (255)
Q Consensus       197 IlGLg~~~~Sl~~ql~~~g~i~~~FS~cL~~--~~~G~l~fG~~~~-------~~~~-l~~tPli~~~  254 (255)
                      |||||++++|+++||..+++++++|||||++  ..+|+|+||+++.       +.++ ++||||+.++
T Consensus       154 IlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~  221 (413)
T 3vla_A          154 MAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNP  221 (413)
T ss_dssp             EEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCS
T ss_pred             ccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCC
Confidence            9999999999999999988889999999986  4689999999874       3567 9999999874
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 255
d1t6ex_ 381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 4e-22
g1lya.1 338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 1e-13
d2apra_ 325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 3e-13
d3cmsa_ 323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 1e-12
d1bxoa_ 323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 1e-12
d1oewa_ 330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-12
d2qp8a1 387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 3e-12
d1j71a_ 334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 1e-11
g1b5f.1 326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 2e-11
d1eaga_ 342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 4e-11
d1am5a_ 324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 5e-11
d2bjua1 329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-10
d1dpja_ 329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 2e-10
d1miqa_ 373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 3e-10
d1izea_ 323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 1e-09
d3psga_ 370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 2e-09
d1qdma2 337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 2e-09
d1smra_ 335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 3e-09
d1mppa_ 357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 4e-09
g1htr.1 372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 1e-08
d1hrna_ 337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 3e-07
d1wkra_ 340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 1e-05
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 92.0 bits (227), Expect = 4e-22
 Identities = 41/190 (21%), Positives = 58/190 (30%), Gaps = 21/190 (11%)

Query: 63  YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSN----DLV 118
             T  Y +  + G       L LD    L W  CD       E P               
Sbjct: 11  PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCD-GGQPPAEIPCSSPTCLLANAYPAP 64

Query: 119 PCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLA 178
            C  P C S       +  D     Y      G  + G L    F  N T+G +   ++ 
Sbjct: 65  GCPAPSCGS-------DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVN 117

Query: 179 LGCGYNQVPGASYHPL----DGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLF 234
           +G      P      L     G+ GL     ++ +Q+ S + + N    CL  GG G   
Sbjct: 118 VGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAI 177

Query: 235 FGDDLYDSSR 244
           FG       +
Sbjct: 178 FGGGPVPWPQ 187
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
d3psga_ 370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 99.96
g1htr.1 372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 99.96
d2apra_ 325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 99.96
d1am5a_ 324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 99.96
d1oewa_ 330 Endothiapepsin {Chestnut blight fungus (Endothia p 99.96
d1dpja_ 329 Acid protease {Baker's yeast (Saccharomyces cerevi 99.95
d1mppa_ 357 Pepsin {Mucor pusillus [TaxId: 4840]} 99.94
d1smra_ 335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 99.94
d1t6ex_ 381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 99.94
d1miqa_ 373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.94
d1j71a_ 334 Acid protease {Yeast (Candida tropicalis) [TaxId: 99.94
d1eaga_ 342 Acid protease {Yeast (Candida albicans) [TaxId: 54 99.93
d1wkra_ 340 Acid protease {Irpex lacteus (Polyporus tulipifera 99.93
g1lya.1 338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1izea_ 323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 99.93
d2qp8a1 387 beta-secretase (memapsin) {Human (Homo sapiens) [T 99.92
g1b5f.1 326 Plant acid proteinase, phytepsin {Cynara carduncul 99.92
d1hrna_ 337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 99.92
d2bjua1 329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.92
d1bxoa_ 323 Acid protease {Fungus (Penicillium janthinellum), 99.91
d3cmsa_ 323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 99.91
d1qdma2 337 Plant acid proteinase, phytepsin {Barley (Hordeum 99.9
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=9.4e-30  Score=230.69  Aligned_cols=172  Identities=23%  Similarity=0.377  Sum_probs=141.7

Q ss_pred             EeeecCCCCCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 025265           56 FQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHN  135 (255)
Q Consensus        56 ~p~~~~~~~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~  135 (255)
                      .|+.+.  .+.+|+++|.||||||++.|++||||+++||+|. .|..|..+.++.|+|++|.                 +
T Consensus        48 ~~l~n~--~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~-~C~~~~~~~~~~yd~~~Ss-----------------t  107 (370)
T d3psga_          48 EPLENY--LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV-YCSSLACSDHNQFNPDDSS-----------------T  107 (370)
T ss_dssp             CTTGGG--TTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSGGGTTSCCBCGGGCT-----------------T
T ss_pred             cccccc--cCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECc-cCCCcccccccccCCCccc-----------------c
Confidence            455442  3779999999999999999999999999999999 9999988889999998874                 1


Q ss_pred             CCCCCCceeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCc------hH
Q 025265          136 CEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IV  208 (255)
Q Consensus       136 C~~~~~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGLg~~~~S------l~  208 (255)
                      + ....|.|.+.|++| ++.|.++.|++.++    ...++++.|||+...... ......+||+|||+...+      +.
T Consensus       108 ~-~~~~~~~~~~Yg~G-s~~G~~~~d~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~  181 (370)
T d3psga_         108 F-EATSQELSITYGTG-SMTGILGYDTVQVG----GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVF  181 (370)
T ss_dssp             C-EEEEEEEEEESSSC-EEEEEEEEEEEEET----TEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHH
T ss_pred             c-ccCCCcEEEEeCCc-eEEEEEEEEEEeee----ceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCchh
Confidence            1 12578999999999 68999999999995    466789999999876322 234678999999987653      67


Q ss_pred             HHhhhcCCc-cceEEEecCC--CCCeEEEECCCCC--CCCCeEEEECccC
Q 025265          209 SQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSSD  253 (255)
Q Consensus       209 ~ql~~~g~i-~~~FS~cL~~--~~~G~l~fG~~~~--~~~~l~~tPli~~  253 (255)
                      .++..+++| +++||+|+..  ..+|.|+||++|.  +.++++|+|+...
T Consensus       182 ~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~  231 (370)
T d3psga_         182 DNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE  231 (370)
T ss_dssp             HHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE
T ss_pred             hhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeeccc
Confidence            789999999 8999999985  3579999999975  5789999998754
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure