Citrus Sinensis ID: 025269

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQFHLLLLVPGLGGSMDFHDSFIP
cccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccccccccccccccccccccccccccccEEEEEEcccccccEEEcccEEEcccccccEEEcccccc
cccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccEEEEccccccccccHHHHHHHHHcccccccccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEEEcccccccccccccccEEcccccccccEEEEEEcccccccEEEEcccEEEEcccccEEEEcccccc
matdfksipiidvsplvakcedpkmaedpgvSQVVKQLDKACKEAGFfyvkghgipeslindVKNITQkffdlpyeekikikltpatgyrgyqrigenitkgipdMHEAIDCYKEIQEGMYGalgktmegcnqwplnppnFRALMEEYVNLCTDLSRKIMRGIALalggspfefegvragdAFWVLRIIgypglsgakdqkkpennigcgahtdyglltlvnqdddiTALEVQFHLLLLvpglggsmdfhdsfip
matdfksipiidvsplVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKikltpatgyrgyQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQFHLLLLVPGLGGSMDFHDSFIP
MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQFHLLLLVPGLGGSMDFHDSFIP
*******IPIIDVSPLVAKC************QVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSG********NNIGCGAHTDYGLLTLVNQDDDITALEVQFHLLLLVPGLGGSMDF******
***DFKSIPIIDVSPLVAKCEDPK***DPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGA****K****IGCGAHTDYGLLTLVNQDDDITALEVQFHLLLLVPGLGGSMDFHDSFIP
MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQFHLLLLVPGLGGSMDFHDSFIP
*****KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQFHLLLLVPGLGGSMDFHDSFIP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQFHLLLLVPGLGGSMDFHDSFIP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query255 2.2.26 [Sep-21-2011]
A6BM06368 1-aminocyclopropane-1-car N/A no 0.862 0.597 0.316 2e-24
Q76NT9368 1-aminocyclopropane-1-car yes no 0.862 0.597 0.316 2e-24
Q54RA4363 Probable iron/ascorbate o no no 0.843 0.592 0.298 4e-22
Q41452349 Flavonol synthase/flavano N/A no 0.737 0.538 0.285 4e-14
Q9ZWQ9335 Flavonol synthase/flavano N/A no 0.709 0.540 0.280 1e-13
Q07512348 Flavonol synthase/flavano N/A no 0.701 0.514 0.284 8e-13
Q9FFQ4325 Probable flavonol synthas no no 0.658 0.516 0.291 8e-13
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.682 0.516 0.280 9e-13
Q39110377 Gibberellin 20 oxidase 1 no no 0.725 0.490 0.298 3e-12
P27744328 Isopenicillin N synthase N/A no 0.776 0.603 0.271 1e-11
>sp|A6BM06|ACCO1_DICMU 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium mucoroides GN=aco PE=3 SV=1 Back     alignment and function desciption
 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 42/262 (16%)

Query: 1   MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLI 60
           M  D + +PIID+S       D         +QV K+++KACKE GFFY+K HG+ + LI
Sbjct: 1   MEIDIEKLPIIDISSFQNNENDK--------NQVAKEINKACKEYGFFYIKNHGVDQELI 52

Query: 61  NDVKNITQKFFDLPYEEKIKIKL-TPATGYRGYQRIGENITKGIPDMHEAIDCYK----- 114
            +++N+ +KFF LP E K+K K+      + G+ ++G+ IT G  D  E   CY      
Sbjct: 53  ENLQNVIKKFFSLPLEIKMKWKMGLTNREWLGFFKVGQEITYGQVDWKEG--CYYSSEMD 110

Query: 115 -EIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFE 173
            +I       L  T E   Q+ +    F++ +  Y+   T LS++I+  I+L+L      
Sbjct: 111 GDINTIHNVPLYPTAEQEEQYEIQ--GFKSTIHTYIEKLTHLSQQIIEAISLSLNLPQDY 168

Query: 174 FEGVRAGDAFWVLRIIGYPGL---------------SGAK------DQKKPE-NNIGCGA 211
           F      D F ++ ++ YP                 +G K      + KKPE    G G 
Sbjct: 169 FFKNYTYDPFILMGLLHYPSFHHQEQEEEQEDDESNNGGKKSPNPDESKKPEVEKFGTGQ 228

Query: 212 HTDYGLLTLVNQDDDITALEVQ 233
           HTD+GLLT++ Q DD+  L+V+
Sbjct: 229 HTDWGLLTVLYQ-DDVGGLQVK 249
Involved in ethylene biosynthesis and macrocyst formation. Overexpression induces overproduction of ethylene and augmented zyg1 expression and zygote formation.
Dictyostelium mucoroides (taxid: 31287)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 7EC: .EC: 4
>sp|Q76NT9|ACCO1_DICDI 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium discoideum GN=aco PE=2 SV=1 Back     alignment and function description
>sp|Q54RA4|Y3291_DICDI Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum GN=DDB_G0283291 PE=3 SV=1 Back     alignment and function description
>sp|Q41452|FLS_SOLTU Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWQ9|FLS_CITUN Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description
>sp|Q9FFQ4|FLS5_ARATH Probable flavonol synthase 5 OS=Arabidopsis thaliana GN=FLS5 PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|P27744|IPNS_NOCLA Isopenicillin N synthase OS=Nocardia lactamdurans GN=pcbC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
255585117327 Flavonol synthase/flavanone 3-hydroxylas 0.905 0.706 0.793 1e-106
224096718343 2-oxoglutarate-dependent dioxygenase [Po 0.913 0.679 0.736 1e-103
449484025329 PREDICTED: probable iron/ascorbate oxido 0.913 0.708 0.742 1e-103
363808340331 uncharacterized protein LOC100789278 [Gl 0.913 0.703 0.733 1e-103
225438799330 PREDICTED: probable iron/ascorbate oxido 0.913 0.706 0.738 1e-102
449468303329 PREDICTED: probable iron/ascorbate oxido 0.913 0.708 0.733 1e-102
6984228329 putative flavonol synthase-like protein 0.913 0.708 0.738 1e-100
297819704332 hypothetical protein ARALYDRAFT_485377 [ 0.905 0.695 0.729 2e-99
388501998331 unknown [Lotus japonicus] 0.913 0.703 0.703 6e-98
21554579332 flavonol synthase-like protein [Arabidop 0.905 0.695 0.725 8e-98
>gi|255585117|ref|XP_002533264.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223526920|gb|EEF29126.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/233 (79%), Positives = 210/233 (90%), Gaps = 2/233 (0%)

Query: 1   MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLI 60
           MATDFKSIPIIDVSPLVAKC+DP +A++P V +VVKQLD+AC+EAGFFYVKGHGIP+SLI
Sbjct: 1   MATDFKSIPIIDVSPLVAKCDDPNVAQEPAVCEVVKQLDQACREAGFFYVKGHGIPDSLI 60

Query: 61  NDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGM 120
            +VK ++ KFFDLPY+EK+KIK+TPA+GYRGYQRIGENIT+GIPDMHEAIDCYKEI+ GM
Sbjct: 61  EEVKKVSHKFFDLPYKEKLKIKMTPASGYRGYQRIGENITEGIPDMHEAIDCYKEIKPGM 120

Query: 121 YGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAG 180
           YGAL K MEGCNQWPL+PPNF+ALMEEYV LC DLSRKI+RGIALALG S  E EG  AG
Sbjct: 121 YGALSKPMEGCNQWPLDPPNFKALMEEYVALCKDLSRKILRGIALALGESADELEGEIAG 180

Query: 181 DAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQ 233
           DAFWV+RIIGYPG+S  K Q   EN+IGCGAHTDYGLLTLVNQDDDITAL+V+
Sbjct: 181 DAFWVMRIIGYPGVS--KKQDLAENDIGCGAHTDYGLLTLVNQDDDITALQVR 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224096718|ref|XP_002310710.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222853613|gb|EEE91160.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449484025|ref|XP_004156762.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|363808340|ref|NP_001241995.1| uncharacterized protein LOC100789278 [Glycine max] gi|255636451|gb|ACU18564.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225438799|ref|XP_002283192.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291 [Vitis vinifera] gi|296082373|emb|CBI21378.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449468303|ref|XP_004151861.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|6984228|gb|AAF34802.1|AF228663_1 putative flavonol synthase-like protein [Euphorbia esula] Back     alignment and taxonomy information
>gi|297819704|ref|XP_002877735.1| hypothetical protein ARALYDRAFT_485377 [Arabidopsis lyrata subsp. lyrata] gi|297323573|gb|EFH53994.1| hypothetical protein ARALYDRAFT_485377 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388501998|gb|AFK39065.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|21554579|gb|AAM63621.1| flavonol synthase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
TAIR|locus:2074800332 AT3G50210 [Arabidopsis thalian 0.905 0.695 0.721 1.3e-93
TAIR|locus:2114683357 DIN11 "DARK INDUCIBLE 11" [Ara 0.886 0.633 0.649 2.2e-82
DICTYBASE|DDB_G0277497 368 aco "oxidoreductase" [Dictyost 0.760 0.527 0.300 2.4e-27
ASPGD|ASPL0000035942 349 AN11188 [Emericella nidulans ( 0.831 0.607 0.308 2.4e-21
ASPGD|ASPL0000060477332 AN0526 [Emericella nidulans (t 0.854 0.656 0.316 1.7e-20
TAIR|locus:2085879349 AT3G19010 [Arabidopsis thalian 0.811 0.593 0.324 2.7e-20
UNIPROTKB|G4NB73346 MGG_00611 "2OG-Fe(II) oxygenas 0.807 0.595 0.316 1.2e-19
ASPGD|ASPL0000013400338 AN7953 [Emericella nidulans (t 0.835 0.630 0.305 4e-19
ASPGD|ASPL0000059067350 AN0051 [Emericella nidulans (t 0.788 0.574 0.327 5.5e-18
DICTYBASE|DDB_G0283291363 DDB_G0283291 [Dictyostelium di 0.752 0.528 0.281 2.6e-17
TAIR|locus:2074800 AT3G50210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 168/233 (72%), Positives = 200/233 (85%)

Query:     1 MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLI 60
             MATDFKS+P+ID+S L+ KC+DP MAED GV++VV+QLDKAC++AGFFYV GHGI E +I
Sbjct:     1 MATDFKSLPVIDISRLLLKCDDPDMAEDVGVAEVVQQLDKACRDAGFFYVIGHGISEDVI 60

Query:    61 NDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGM 120
             N V+ IT++FF LPYEEK+KIK+TPA GYRGYQRIGEN+TKGIPD+HEAIDCY+EI++G 
Sbjct:    61 NKVREITREFFKLPYEEKLKIKMTPAAGYRGYQRIGENVTKGIPDIHEAIDCYREIKQGK 120

Query:   121 YGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAG 180
             YG +GK MEG NQWP NP  F+ LMEEY+ LCTDLSRKI+RGI+LAL GSP+EFEG  AG
Sbjct:   121 YGDIGKVMEGPNQWPENPQEFKELMEEYIKLCTDLSRKILRGISLALAGSPYEFEGKMAG 180

Query:   181 DAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQ 233
             D FWV+R+IGYPG      Q  PEN+IGCGAHTDYGLLTLVNQDDD TAL+V+
Sbjct:   181 DPFWVMRLIGYPGAEFTNGQ--PENDIGCGAHTDYGLLTLVNQDDDKTALQVR 231
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA;ISS
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009267 "cellular response to starvation" evidence=TAS
GO:0007568 "aging" evidence=TAS
TAIR|locus:2114683 DIN11 "DARK INDUCIBLE 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277497 aco "oxidoreductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035942 AN11188 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000060477 AN0526 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2085879 AT3G19010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4NB73 MGG_00611 "2OG-Fe(II) oxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000013400 AN7953 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000059067 AN0051 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283291 DDB_G0283291 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-166
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-44
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 7e-34
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 5e-32
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 4e-22
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-21
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 3e-19
PLN02947374 PLN02947, PLN02947, oxidoreductase 7e-19
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 1e-18
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-18
PLN02904357 PLN02904, PLN02904, oxidoreductase 3e-18
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-16
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-16
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-14
PLN02704335 PLN02704, PLN02704, flavonol synthase 6e-14
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-13
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 8e-13
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 9e-13
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 5e-12
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 1e-10
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 6e-10
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 4e-09
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 7e-09
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-07
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-06
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-05
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 0.002
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information 
 Score =  461 bits (1188), Expect = e-166
 Identities = 177/233 (75%), Positives = 203/233 (87%), Gaps = 2/233 (0%)

Query: 1   MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLI 60
           MATDFKSIP+ID+SPLVAKC+DP MAEDP V++VV+QLDKAC++AGFFYVKGHGI +SLI
Sbjct: 1   MATDFKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLI 60

Query: 61  NDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGM 120
             V+ +T +FF+LPYEEK+KIK+TPA GYRGYQRIGEN+TKG PDMHEAIDCY+E + G 
Sbjct: 61  KKVREVTHEFFELPYEEKLKIKMTPAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGK 120

Query: 121 YGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAG 180
           YG LGK MEG NQWP NP  F+ALMEEY+ LCTDLSRKI+RGIALALGGSP EFEG  AG
Sbjct: 121 YGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKILRGIALALGGSPDEFEGKMAG 180

Query: 181 DAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQ 233
           D FWV+RIIGYPG+S       PEN+IGCGAHTDYGLLTLVNQDDDITAL+V+
Sbjct: 181 DPFWVMRIIGYPGVSNLNGP--PENDIGCGAHTDYGLLTLVNQDDDITALQVR 231

Length = 329
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 255
PLN02485329 oxidoreductase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02704335 flavonol synthase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.94
PLN03176120 flavanone-3-hydroxylase; Provisional 99.81
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.27
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 87.0
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 85.1
>PLN02485 oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=3e-59  Score=405.37  Aligned_cols=250  Identities=71%  Similarity=1.228  Sum_probs=207.2

Q ss_pred             CCCCCCCCcEEeCCcCcccCCCCCCCCChhHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHhcCCCHHHHhc
Q 025269            1 MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIK   80 (255)
Q Consensus         1 m~~~~~~iPvIDls~l~~~~~~~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~   80 (255)
                      |++++..||||||+.+.++.+++....+..+++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|++
T Consensus         1 ~~~~~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~   80 (329)
T PLN02485          1 MATDFKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLK   80 (329)
T ss_pred             CCCCCCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHh
Confidence            89999999999999986532222111123567899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCccceecccccccCCCCcchhhhchhccccCcccccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 025269           81 IKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIM  160 (255)
Q Consensus        81 ~~~~~~~~~~GY~~~~~~~~~g~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll  160 (255)
                      +.......++||.+.+++...+..|++|.|.++++..+........+..++|.||+.+++||+.+++|++.|.+++.+||
T Consensus        81 ~~~~~~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll  160 (329)
T PLN02485         81 IKMTPAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKIL  160 (329)
T ss_pred             hcccCCCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            87655556899999887766677899999998765433222222234467899999889999999999999999999999


Q ss_pred             HHHHHHcCCCcccccccccCCCccceEEcccCCCCCCCCCCCCCCccccccccccCCeeEEeeCCCCCceeEEc--CCee
Q 025269          161 RGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQF--HLLL  238 (255)
Q Consensus       161 ~~i~~~Lgl~~~~l~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~~~~~HtD~~~lTlL~~d~~~~GLQv~~--~~w~  238 (255)
                      ++|+++||+++++|.+.+.+++.+.||++|||+++....  .++..+|+++|||+|+||||+|++.++||||++  ++|+
T Consensus       161 ~~~a~~Lgl~~~~f~~~~~~~~~~~lrl~~YP~~~~~~~--~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~~~g~Wi  238 (329)
T PLN02485        161 RGIALALGGSPDEFEGKMAGDPFWVMRIIGYPGVSNLNG--PPENDIGCGAHTDYGLLTLVNQDDDITALQVRNLSGEWI  238 (329)
T ss_pred             HHHHHHcCCChHHhhhhhccCccceEEEEeCCCCccccC--CcccCcccccccCCCeEEEEeccCCCCeeeEEcCCCcEE
Confidence            999999999998887665455677899999999974211  234678999999999999999974589999985  4799


Q ss_pred             ecCCCCCceeecCC
Q 025269          239 LVPGLGGSMDFHDS  252 (255)
Q Consensus       239 ~V~~~~g~l~Vn~~  252 (255)
                      +|||+||++|||.|
T Consensus       239 ~V~p~pg~~vVNiG  252 (329)
T PLN02485        239 WAIPIPGTFVCNIG  252 (329)
T ss_pred             ECCCCCCcEEEEhH
Confidence            99999999999976

>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-11
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-11
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 3e-10
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 2e-08
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 2e-08
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 25/221 (11%)
Query: 4   DFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDV 63
           D   +P ID+  +  + +D K+ E+      +++L KA  + G  ++  HGIP  L+  V
Sbjct: 43  DGPQVPTIDLKNI--ESDDEKIREN-----CIEELKKASLDWGVMHLINHGIPADLMERV 95
Query: 64  KNITQKFFDLPYEEKIKIKLTPATG-YRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYG 122
           K   ++FF L  EEK K     ATG  +GY   G  +        E  D +       + 
Sbjct: 96  KKAGEEFFSLSVEEKEKYANDQATGKIQGY---GSKLANNASGQLEWEDYF------FHL 146
Query: 123 ALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAG-- 180
           A  +     + WP  P ++     EY      L+ K+ + +++ LG  P   E    G  
Sbjct: 147 AYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE 206
Query: 181 DAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLV 221
           +    ++I  YP         +PE  +G  AHTD   LT +
Sbjct: 207 ELLLQMKINYYPKCP------QPELALGVEAHTDVSALTFI 241
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 3e-73
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 6e-66
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-64
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 5e-53
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 4e-37
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 6e-35
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
 Score =  224 bits (574), Expect = 3e-73
 Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 1   MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLI 60
           M+T   +I  +  S                 ++  ++L  + +  GF  +  + + ++ I
Sbjct: 2   MSTS--AIDPVSFSLY-----------AKDFTRFAQELGASFERYGFAVLSDYDLDQARI 48

Query: 61  NDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQRIGENITKG--IPDMHEAIDCYKEIQE 118
           +   +  + FF LP E K +       G RGY   G    KG    D+ E     +++  
Sbjct: 49  DAAVDSAKAFFALPVETKKQYAGVKG-GARGYIPFGVETAKGADHYDLKEFWHMGRDLPP 107

Query: 119 GMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVR 178
           G      +     N WP   P F+  +    N    +  K++  IA  L      F+   
Sbjct: 108 GHR---FRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFKP-T 163

Query: 179 AGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQ 233
             D   VLR++ YP         K    +  GAH D   +TL+    +   LEV 
Sbjct: 164 VQDGNSVLRLLHYPP------IPKDATGVRAGAHGDINTITLLLG-AEEGGLEVL 211
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 84.83
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=1.2e-56  Score=385.80  Aligned_cols=225  Identities=21%  Similarity=0.280  Sum_probs=192.6

Q ss_pred             CCCCcEEeCCcCcccCCCCCCCCChhHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHhcCCCHHHHhccccC
Q 025269            5 FKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLT   84 (255)
Q Consensus         5 ~~~iPvIDls~l~~~~~~~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~   84 (255)
                      +.+||||||+.+.+           .+++++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++...
T Consensus         4 ~~~iPvIDls~~~~-----------~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~   72 (312)
T 3oox_A            4 TSAIDPVSFSLYAK-----------DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGV   72 (312)
T ss_dssp             CCSSCCEETHHHHH-----------CHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSS
T ss_pred             CCCCCeEEChHhcc-----------cHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccC
Confidence            56899999998753           3678999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCccceecccccc--cCCCCcchhhhchhccccCcccccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 025269           85 PATGYRGYQRIGENIT--KGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRG  162 (255)
Q Consensus        85 ~~~~~~GY~~~~~~~~--~g~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~  162 (255)
                       ...++||++.+.+..  .+..|++|.|.++.+......   .....++|.||+.+++||+.+++|++.|.+++..||++
T Consensus        73 -~~~~~Gy~~~g~e~~~~~~~~D~kE~~~~~~~~~~~~~---~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~  148 (312)
T 3oox_A           73 -KGGARGYIPFGVETAKGADHYDLKEFWHMGRDLPPGHR---FRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEA  148 (312)
T ss_dssp             -GGGTSEEECCCCCCSTTSCSCCCCEEEEECCCCCTTCG---GGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCccccccccceecCCCCCCCceeeeEeecCCCcCCc---chhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             456899998876643  246799999988764432211   11134679999999999999999999999999999999


Q ss_pred             HHHHcCCCcccccccccCCCccceEEcccCCCCCCCCCCCCCCccccccccccCCeeEEeeCCCCCceeEEcC--Ceeec
Q 025269          163 IALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQFH--LLLLV  240 (255)
Q Consensus       163 i~~~Lgl~~~~l~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~~~~~HtD~~~lTlL~~d~~~~GLQv~~~--~w~~V  240 (255)
                      |+++||+++++|.+.+. .+.+.||++||||++.     .+ ..+|+++|||+|+||||+|| .++||||+++  +|++|
T Consensus       149 la~~Lgl~~~~f~~~~~-~~~~~lr~~~Ypp~~~-----~~-~~~g~~~HtD~g~lTlL~qd-~v~GLqV~~~~g~W~~V  220 (312)
T 3oox_A          149 IATYLKLERDFFKPTVQ-DGNSVLRLLHYPPIPK-----DA-TGVRAGAHGDINTITLLLGA-EEGGLEVLDRDGQWLPI  220 (312)
T ss_dssp             HHHHTTSCTTTTHHHHT-TCCCEEEEEEECCCSS-----CC-C--CEEEECCCSSEEEEECC-TTSCEEEECTTSCEEEC
T ss_pred             HHHHhCcCHHHHHHHhc-CCcceeeeEecCCCCC-----Cc-CCcCccceecCceEEEEeEc-CcCceEEECCCCcEEEC
Confidence            99999999999988874 5668999999999985     22 33999999999999999998 6999999864  69999


Q ss_pred             CCCCCceeecCC
Q 025269          241 PGLGGSMDFHDS  252 (255)
Q Consensus       241 ~~~~g~l~Vn~~  252 (255)
                      +|+||+||||.|
T Consensus       221 ~p~pg~~vVNiG  232 (312)
T 3oox_A          221 NPPPGCLVINIG  232 (312)
T ss_dssp             CCCSSCEEEEEC
T ss_pred             CCCCCeEEEEhH
Confidence            999999999986
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 255
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-32
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 3e-29
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-27
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-24
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Deacetoxycephalosporin C synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score =  118 bits (295), Expect = 3e-32
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 28/222 (12%)

Query: 6   KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKN 65
            ++P   ++ L    +     +         +  +  ++ G FY+   G+ ++ +   K+
Sbjct: 3   TTVPTFSLAEL----QQGLHQD---------EFRRCLRDKGLFYLTDCGLTDTELKSAKD 49

Query: 66  ITQKFFDLPYEEKIKIKLTPATG-YRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGAL 124
           +   FF+   E + +   +P     RG+  +    T  I +     D             
Sbjct: 50  LVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSM---------- 99

Query: 125 GKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFW 184
                G         +F  +  +Y +     SR + R +  A G  P             
Sbjct: 100 -CYSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPL 158

Query: 185 VLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDD 226
           +            + +   E  +    H D  ++TL+ Q   
Sbjct: 159 LRFRYFPQ---VPEHRSAEEQPLRMAPHYDLSMVTLIQQTPC 197
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1e-49  Score=346.23  Aligned_cols=226  Identities=24%  Similarity=0.375  Sum_probs=182.3

Q ss_pred             CCCCCcEEeCCcCcccCCCCCCCCChhHHHHHHHHHHHHHhcceEEEEcCCCChHHHHHHHHHHHHhcCCCHHHHhcccc
Q 025269            4 DFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKL   83 (255)
Q Consensus         4 ~~~~iPvIDls~l~~~~~~~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~   83 (255)
                      +..+||||||+.+.++  +     .+.|++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++..
T Consensus        42 ~~~~IPvIDls~l~~~--d-----~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~  114 (349)
T d1gp6a_          42 DGPQVPTIDLKNIESD--D-----EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYAN  114 (349)
T ss_dssp             CSCCCCEEECTTTTCS--C-----HHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBC
T ss_pred             CCCCcCeEEChhcCCC--C-----HHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhc
Confidence            4568999999999753  2     35788999999999999999999999999999999999999999999999999975


Q ss_pred             CCC-CCCccceecccccccCCCCcchhhhchhccccCcccccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 025269           84 TPA-TGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRG  162 (255)
Q Consensus        84 ~~~-~~~~GY~~~~~~~~~g~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~  162 (255)
                      ... .++.||.....+...+..+..+.+.... .        ......+|.||+..+.|++.+++|++.|..++..|+++
T Consensus       115 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~n~wp~~~~~f~e~~~~~~~~~~~la~~ll~~  185 (349)
T d1gp6a_         115 DQATGKIQGYGSKLANNASGQLEWEDYFFHLA-Y--------PEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA  185 (349)
T ss_dssp             BGGGTBCSEEECCCCCSTTCCCCSCEEEEEEE-E--------SGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCccccccccccccccccchhhhhcccc-c--------ccccccccccccccchHHHHHHHHHHHHHHHHHhhhHH
Confidence            543 2344443322222223333333221110 0        01134678999999999999999999999999999999


Q ss_pred             HHHHcCCCccccccccc--CCCccceEEcccCCCCCCCCCCCCCCccccccccccCCeeEEeeCCCCCceeEEcC-Ceee
Q 025269          163 IALALGGSPFEFEGVRA--GDAFWVLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVQFH-LLLL  239 (255)
Q Consensus       163 i~~~Lgl~~~~l~~~~~--~~~~~~lr~~~Yp~~~~~~~~~~~~~~~~~~~HtD~~~lTlL~~d~~~~GLQv~~~-~w~~  239 (255)
                      ++++||+++++|.+.+.  +.+.+.||++|||+++      .+...+|+++|||+|+||||+|+ .++||||+.. +|++
T Consensus       186 la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~------~~~~~~g~~~HtD~g~lTlL~q~-~~~GLqv~~~g~W~~  258 (349)
T d1gp6a_         186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCP------QPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVT  258 (349)
T ss_dssp             HHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCS------STTTCCSEEEECCCSSEEEEEEC-SCCCEEEEETTEEEE
T ss_pred             HHHHcCCCHHHHHHHhccccccceeeeeccccccc------chhhccccccCCCCcceEEEecc-CCcceeeecCCceEE
Confidence            99999999999877653  3456789999999997      35578899999999999999999 7999999865 6999


Q ss_pred             cCCCCCceeecCC
Q 025269          240 VPGLGGSMDFHDS  252 (255)
Q Consensus       240 V~~~~g~l~Vn~~  252 (255)
                      |+|++|++|||.|
T Consensus       259 V~p~~~a~vVNvG  271 (349)
T d1gp6a_         259 AKCVPDSIVMHIG  271 (349)
T ss_dssp             CCCCTTCEEEEEC
T ss_pred             ccCCCCCeeeeHH
Confidence            9999999999986
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure