Citrus Sinensis ID: 025278

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVPKF
Secondary Structure (PSIPRED)
cEEEEEcccccccccEEEcccccccccccccEEEEEEEEEccHHHHHHHccccccccccccccccccccEEEEEEcccccccccccEEEEEccccccccccccccccEEEcccccccccccccccHHHHHHcHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHcccccEEEEccccccHHHHHHccccEEEEccccccccccccccEEEEcccccHHHHHHHHHcccccEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccHHEEEEHccccccccccccEEEEEEEEEEcHHHHHHHccccccccccccEEccccEEEEEEEEcccccccccccEEEEccccccccccccccccEcEEEEccHHHEEEcccccHHHHHHHHcHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHcccEEEEcccccHHHHHccccEEEEccccHHHHHHHHHHcccccEEEEEEcccccccccc
Coil and Loop (DISEMBL)
MKAWVYKEygnsqsvlkfetnvevpslreDQVLIKVVAAALNPIDFKRMlgafsatdsplptipgydvaGVVEKVGSqvkkfkvgdevygdinekaldhpkrngslaEYTAVEENLLalkpknlsfveaaslplatETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAskvaatssTAKLDLLRSLGADLAIDYTkeniedlpeKFDVVFDAVGKMCISIVYQKCDKFQekslinfglfrqevpkf
Flexible Loop (DISEMBL)
mkawvykeygnsqsvlkfETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDinekaldhpkrngSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSlinfglfrqevpkf
Low Complexity Region (SEG)
MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGaskvaatsstakLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVPKF
Disordered region (IsUnstruct)
***WVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALD******SLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR******
Disordered Region (DISOPRED)
MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVPK*
Disordered Region (DISEMBL)
MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVPKF
Disordered Region (DISPRO)
MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVPKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q9ZUC1	386	Quinone oxidoreductase-li	yes	no	0.878	0.580	0.752	1e-91
Q7T3C7	387	Reticulon-4-interacting p	yes	no	0.835	0.550	0.390	1e-31
Q0VC50	396	Reticulon-4-interacting p	yes	no	0.839	0.540	0.363	3e-30
Q924D0	396	Reticulon-4-interacting p	yes	no	0.839	0.540	0.371	1e-29
Q8WWV3	396	Reticulon-4-interacting p	yes	no	0.839	0.540	0.359	2e-29
Q8H0M1	329	Quinone-oxidoreductase ho	N/A	no	0.760	0.589	0.4	7e-29
O42909	347	Zinc-type alcohol dehydro	yes	no	0.933	0.685	0.346	1e-27
P54006	297	Protein TOXD OS=Cochliobo	N/A	no	0.792	0.680	0.356	6e-25
Q54II4	352	Reticulon-4-interacting p	yes	no	0.843	0.610	0.320	2e-24
Q8CRJ7	336	Zinc-type alcohol dehydro	no	no	0.713	0.541	0.343	5e-24

>sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2

 Score =  335 bits (860), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/226 (75%), Positives = 194/226 (85%), Gaps = 2/226 (0%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWVY +YG    VLK E+N+ VP ++EDQVLIKVVAAALNP+D KR  G F ATDSPL
Sbjct: 78  MKAWVYSDYGGVD-VLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPL 136

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           PT+PGYDVAGVV KVGS VK  K GDEVY +++EKAL+ PK+ GSLAEYTAVEE LLALK
Sbjct: 137 PTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALK 196

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           PKN+ F +AA LPLA ETA EGL R+ FSAGKSILVL GAGGVG++VIQLAKHV+GASKV
Sbjct: 197 PKNIDFAQAAGLPLAIETADEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAKHVYGASKV 256

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC 226
           AAT+ST KL+L+RSLGADLAIDYTKENIEDLP+K+DVVFDA+G MC
Sbjct: 257 AATASTEKLELVRSLGADLAIDYTKENIEDLPDKYDVVFDAIG-MC 301

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q7T3C7|RT4I1_DANRE Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 136/246 (55%), Gaps = 33/246 (13%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLGAFSAT--- 56
           M AWV  +YG +  VL+F  N  +P +   ++V++KV AA LNPID     G  +AT   
Sbjct: 29  MPAWVIDKYGKND-VLRFTKNAALPIIHYPNEVVVKVHAAGLNPIDISMRGGYGAATMAM 87

Query: 57  -DSPL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSL 106
              PL         P I G DV+G + + G  VK FK GD+V+  I       P + GSL
Sbjct: 88  KRDPLNISQSGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIP------PWKQGSL 141

Query: 107 AEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-----FSAGKSILVLGGAG 161
           AE+  V  N ++ KPK+L   EAAS+P    TA+  +  +       SA K +L+LGG+G
Sbjct: 142 AEFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAKKRVLILGGSG 201

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYT----KENIEDLPEKFDV 217
           GVGT  IQ+ K  +GA  V  T S     L+R LGAD  +DYT    ++ +++L EKFD+
Sbjct: 202 GVGTFAIQMVK-AWGA-HVTVTCSQNAERLVRDLGADDVVDYTAGPVEKQLKNL-EKFDL 258

Query: 218 VFDAVG 223
           + D++G
Sbjct: 259 ILDSIG 264

May be a potent inhibitor of regeneration.

Danio rerio (taxid: 7955)

>sp|Q0VC50|RT4I1_BOVIN Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 128/245 (52%), Gaps = 31/245 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLG----AFSA 55
           M AWV  +YG S  VL+F  N+ +P +   ++V+IKV AA++NPID     G    A + 
Sbjct: 43  MPAWVIDKYG-SNEVLRFTQNMMIPMIHYPNEVIIKVHAASINPIDVNMRSGYGATALNM 101

Query: 56  TDSPL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSL 106
              PL         P   G DV+GVV + G  V+ FK GDEV+  +       P + G+L
Sbjct: 102 KRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVRYFKPGDEVWAAVP------PWKQGTL 155

Query: 107 AEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-----FSAGKSILVLGGAG 161
           +E+  V  N ++ KP++L+  +AASLP    TA+  + +          GK +L+LG +G
Sbjct: 156 SEFVVVSGNEVSHKPRSLTHTQAASLPYVALTAWSAINKVGGLNDRNCTGKRVLILGASG 215

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE---DLPEKFDVV 218
           GVGT  IQ+ K     + V A  S    +L+R LGAD  IDY   N+E      + FD +
Sbjct: 216 GVGTFAIQVMKA--WDAHVTAVCSQDASELVRKLGADDVIDYKSGNVEAQLKSSKPFDFI 273

Query: 219 FDAVG 223
            D VG
Sbjct: 274 LDNVG 278

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Bos taurus (taxid: 9913)

>sp|Q924D0|RT4I1_MOUSE Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1 SV=2

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 132/245 (53%), Gaps = 31/245 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLG----AFSA 55
           M AWV  +YG ++ VL+F  N+ +P +   ++V+IKV AA++NPID     G    A + 
Sbjct: 43  MPAWVIDKYGKNE-VLRFTQNMMLPIIHYPNEVIIKVHAASVNPIDVNMRSGYGATALNM 101

Query: 56  TDSPL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSL 106
              PL         P   G DV+GVV + G  VK F+ GDEV+  +       P + G+L
Sbjct: 102 KRDPLHMKTKGEEFPLTLGRDVSGVVMECGLDVKYFQPGDEVWAAVP------PWKQGTL 155

Query: 107 AEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-----FSAGKSILVLGGAG 161
           +E+  V  N ++ KPK+L+  +AASLP    TA+  + +          GK  L+LG +G
Sbjct: 156 SEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLSDKNCKGKRALILGASG 215

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK---FDVV 218
           GVGT  IQ+ K  +GA   A  S  A  +L+R LGAD  IDYT  ++E+  +    FD +
Sbjct: 216 GVGTFAIQVMK-AWGAHVTAVCSKDAS-ELVRKLGADEVIDYTLGSVEEQLKSLKLFDFI 273

Query: 219 FDAVG 223
            D VG
Sbjct: 274 LDNVG 278

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Mus musculus (taxid: 10090)

>sp|Q8WWV3|RT4I1_HUMAN Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 31/245 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLG----AFSA 55
           M AWV  +YG ++ VL+F  N+ +P +   ++V++KV AA++NPID     G    A + 
Sbjct: 43  MPAWVIDKYGKNE-VLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNM 101

Query: 56  TDSPL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSL 106
              PL         P   G DV+GVV + G  VK FK GDEV+  +       P + G+L
Sbjct: 102 KRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTL 155

Query: 107 AEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-----SAFSAGKSILVLGGAG 161
           +E+  V  N ++ KPK+L+  +AASLP    TA+  + +          GK +L+LG +G
Sbjct: 156 SEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASG 215

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK---FDVV 218
           GVGT  IQ+ K     + V A  S    +L+R LGAD  IDY   ++E+  +    FD +
Sbjct: 216 GVGTFAIQVMKA--WDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFI 273

Query: 219 FDAVG 223
            D VG
Sbjct: 274 LDNVG 278

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Homo sapiens (taxid: 9606)

>sp|Q8H0M1|QORH_SPIOL Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1

 Score =  127 bits (319), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 110/210 (52%), Gaps = 16/210 (7%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSAT-DSP 59
           M A  Y  YG     LK    V VP  + D++L+K+ AA LNPID+K   G         
Sbjct: 6   MHAIQYSGYGGGTDALK-HVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRK 64

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLAL 119
            PTIPG DVAG V + GS V +FK GD+V        L H    G+LAEY   +ENL   
Sbjct: 65  FPTIPGTDVAGEVVQAGSAVNRFKTGDKVVA-----VLSH-ATGGALAEYAVAKENLTVA 118

Query: 120 KPKNLSFVEAASLPLATETAYEGLERSA------FSAGKSILVLGGAGGVGTMVIQLAKH 173
           +P  +S  E A+LP+A  TA++ L + A          K+IL+   +GGVG   +QLAK 
Sbjct: 119 RPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAK- 177

Query: 174 VFGASKVAATSSTAKLDLLRSLGADLAIDY 203
             G + V AT     LD ++ LGAD  +DY
Sbjct: 178 -LGNTHVTATCGARNLDFVKGLGADEVLDY 206

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O42909|YBI2_SCHPO Zinc-type alcohol dehydrogenase-like protein C16A3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16A3.02c PE=3 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 131/254 (51%), Gaps = 16/254 (6%)

Query: 3   AWVYKEYGNSQSVLKFETNVEVPS---LREDQVLIKVVAAALNPIDFKRM--LGAFSATD 57
           AW+Y   G  + VL  E  + +P+   L    VL++VVA ++NP+D+K M      +   
Sbjct: 14  AWLYNRTGKPKDVLYLEKGLHIPNPAELGPYDVLVEVVATSINPLDYKLMNTYQMIAKAL 73

Query: 58  SPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLL 117
             LP IPGYD AG V  VGS+VK+F     V+G   +      ++ GS A +    +  +
Sbjct: 74  FKLPNIPGYDFAGRVLAVGSEVKEFSATQRVWG--CQSFPRAGRQGGSCATHIVTGDKDV 131

Query: 118 ALKPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFG 176
              P  +SF E A   +A  TA+E L R      G  +++ G +GGVGT  + LAK +  
Sbjct: 132 WHLPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLVIEGASGGVGTFAVALAKAL-- 189

Query: 177 ASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IEDLPE--KFDVVFDAVGKMCISIVYQK 233
             +V   SST  LDL +SLGA   +DY K+N +E L +   +D VFD V     +++Y+ 
Sbjct: 190 ECEVTTISSTENLDLCKSLGATHTLDYKKDNLVERLADLGPYDFVFDCVND---NVLYRA 246

Query: 234 CDKFQEKSLINFGL 247
             KF +     FG+
Sbjct: 247 SSKFVKPDGAFFGI 260

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P54006|TOXD_COCCA Protein TOXD OS=Cochliobolus carbonum GN=TOXD PE=3 SV=1

 Score =  114 bits (285), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 120/227 (52%), Gaps = 25/227 (11%)

Query: 24  VPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK-F 82
           +P LR+D +L++ V+ ALNP D+K +L       SP   + G D AG+VE+VG  VKK F
Sbjct: 23  IPKLRDDYILVRTVSVALNPTDWKHILRL-----SPPGCLVGCDYAGIVEEVGRSVKKPF 77

Query: 83  KVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG 142
           K GD V G  +         +G+ AE   V+ ++ A  P+NLSF EAA+L +  +T  +G
Sbjct: 78  KKGDRVCGFAHGGNAVFSD-DGTFAEVITVKGDIQAWIPENLSFQEAATLGVGIKTVGQG 136

Query: 143 LERS--------AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS 194
           L +S               IL+ GG+   GT+ IQLAK      +V  T S    +L++S
Sbjct: 137 LYQSLKLSWPTTPIEHAVPILIYGGSTATGTLAIQLAK--LSGYRVITTCSPHHFELMKS 194

Query: 195 LGADLAIDY----TKENIEDLPE-KFDVVFDAVGKMCISIVYQKCDK 236
           LGADL  DY    + ++I    + K  +VFD +    I +  + CD+
Sbjct: 195 LGADLVFDYHEITSADHIRRCTQNKLKLVFDTIS---IDVSARFCDR 238

Unique to isolates that make the cyclic peptide HC-toxin, but has no role in toxin biosynthesis.

Cochliobolus carbonum (taxid: 5017)

>sp|Q54II4|RT4I1_DICDI Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=rtn4ip1 PE=3 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 16/231 (6%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLG-AFSATDSP 59
           MK  +   YG S  +L+++T++ VP   + QVLIK+ + ++NP+D     G A S  D  
Sbjct: 1   MKGILLNGYGESLDLLEYKTDLPVPKPIKSQVLIKIHSTSINPLDNVMRKGYASSIVDLK 60

Query: 60  L--PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLL 117
           L  P I G + +G + ++G  V  +++GD+V+      +   P   GS  EY  V+E+ +
Sbjct: 61  LKLPIILGRECSGEIVEIGDSVWDYEIGDQVW------SASPPFSMGSHCEYITVDESEI 114

Query: 118 ALKPKNLSFVEAASLPLATETAYEGL-----ERSAFSAGKSILVLGGAGGVGTMVIQLAK 172
           +LKPKNL+  ++AS+P A+ TA+  +          +    ILV GG G VG  ++QL K
Sbjct: 115 SLKPKNLTHQQSASIPFASLTAWNAIYNVLPTNKKITTNTKILVNGGNGSVGFFILQLLK 174

Query: 173 HVFGASKVAATSSTAKLDLLRSLG-ADLAIDYTKENIEDLP-EKFDVVFDA 221
                ++V+ T +    + L+ L   +  IDY    I D    KFD++F+ 
Sbjct: 175 KHLNVNQVSTTCNIKHFEKLKKLTLVNETIDYNNLKINDNDNNKFDLIFNC 225

Dictyostelium discoideum (taxid: 44689)

>sp|Q8CRJ7|ZDH1_STAES Zinc-type alcohol dehydrogenase-like protein SE_1777 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1777 PE=3 SV=1

 Score =  111 bits (277), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 112/204 (54%), Gaps = 22/204 (10%)

Query: 19  ETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQ 78
           E N ++P     ++L+KV + ++NP+D K+     +     +P + G+D  GV+EK+G Q
Sbjct: 20  EFNFDIPHPSGHELLVKVQSISVNPVDTKQR----TMPVDKVPRVLGFDAVGVIEKIGDQ 75

Query: 79  VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATET 138
           V  F+ GD V+          P +NGS  EY  +EE L+A  P NL   +AASLPL   T
Sbjct: 76  VSMFQEGDVVFYS------GSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLT 129

Query: 139 AYEGL-------ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL 191
           AYE L       +  + + GKS+L++ GAGGVG++  Q+AK  +G   +   S    +  
Sbjct: 130 AYETLFDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAK-FYGLKVITTASREDTIKW 188

Query: 192 LRSLGADLAIDYTKENIEDLPEKF 215
             ++GAD+ +++ K    DL ++F
Sbjct: 189 SVNMGADVVLNHKK----DLSQQF 208

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
307135978	383	alcohol dehydrogenase [Cucumis melo subs	0.886	0.590	0.762	5e-96
118481558	322	unknown [Populus trichocarpa]	0.890	0.704	0.783	2e-95
310747931	383	chloroplastic alkenal/one oxidoreductase	0.886	0.590	0.754	6e-95
449478569	383	PREDICTED: quinone oxidoreductase-like p	0.886	0.590	0.754	7e-95
449434925	383	PREDICTED: quinone oxidoreductase-like p	0.886	0.590	0.754	7e-95
356567630	395	PREDICTED: quinone oxidoreductase-like p	0.886	0.572	0.75	2e-94
356526809	397	PREDICTED: quinone oxidoreductase-like p	0.886	0.569	0.75	3e-94
255568816	389	alcohol dehydrogenase, putative [Ricinus	0.886	0.580	0.75	4e-94
118488941	383	unknown [Populus trichocarpa x Populus d	0.886	0.590	0.745	5e-93
224140597	309	predicted protein [Populus trichocarpa]	0.886	0.731	0.745	1e-92

>gi|307135978|gb|ADN33837.1| alcohol dehydrogenase [Cucumis melo subsp. melo]

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 180/236 (76%), Positives = 203/236 (86%), Gaps = 10/236 (4%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWVY EYG    VLKF+T+V VP ++EDQVLIKVVAAALNP+D KRMLG F ATDSPL
Sbjct: 75  MKAWVYGEYGGVD-VLKFDTSVSVPEVKEDQVLIKVVAAALNPVDGKRMLGKFKATDSPL 133

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           PT+PGYDVAGVV KVGSQVK+ K GDEVYG+INEKALD PK+ GSLAEYTAVEE LLALK
Sbjct: 134 PTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKALDGPKQFGSLAEYTAVEEKLLALK 193

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           PKN+ F++AA LPLA ETAYEGLE++ FSAGKSILVL GAGGVG++VIQLAK+VFGASKV
Sbjct: 194 PKNIDFIQAAGLPLAIETAYEGLEKTNFSAGKSILVLNGAGGVGSLVIQLAKNVFGASKV 253

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDK 236
           AAT+ST KL+ L+SLG DLAIDYTKENIEDLPEKFDVV+DA+G         +CDK
Sbjct: 254 AATASTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDVVYDAIG---------QCDK 300

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481558|gb|ABK92721.1| unknown [Populus trichocarpa]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 185/236 (78%), Positives = 207/236 (87%), Gaps = 9/236 (3%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWVY EYGN  +VLK ++NV VP ++EDQVLIKVVAA++NP+D KRMLG F  +DSP+
Sbjct: 13  MKAWVYGEYGNVSNVLKLDSNVTVPQVKEDQVLIKVVAASINPVDAKRMLGMFKVSDSPV 72

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           PT+PGYDVAGVV KVGSQVK+ KVGDEVYGDINEKALDHPKR GSLAEYTAVEENLL+LK
Sbjct: 73  PTVPGYDVAGVVVKVGSQVKRLKVGDEVYGDINEKALDHPKRFGSLAEYTAVEENLLSLK 132

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           PKNLSF EAASLPL  ETA+EGLER+ FSAGKSILVLGGAGGVGT +IQLAKHVFGAS V
Sbjct: 133 PKNLSFAEAASLPLVIETAHEGLERTGFSAGKSILVLGGAGGVGTQIIQLAKHVFGASTV 192

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDK 236
           AATSST+KL+LL+SLGADLAIDYTKEN EDLPEKFDVV+DAVG         +CD+
Sbjct: 193 AATSSTSKLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAVG---------QCDR 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310747931|dbj|BAJ23910.1| chloroplastic alkenal/one oxidoreductase [Cucumis sativus]

 Score =  352 bits (904), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 178/236 (75%), Positives = 202/236 (85%), Gaps = 10/236 (4%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWVY EYG    VLKF+++V VP ++EDQVLIKVVAAALNP+D KRMLG F ATDSPL
Sbjct: 75  MKAWVYGEYGGVD-VLKFDSSVSVPEVKEDQVLIKVVAAALNPVDGKRMLGKFKATDSPL 133

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           PT+PGYDVAGVV KVGSQVK+ K GDEVYG+INEKALD PK+ GSLAEYTAVEE LLA+K
Sbjct: 134 PTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKALDGPKQFGSLAEYTAVEEKLLAVK 193

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           PKN+ FV+AA LPLA ETAYEGLE++ FS GKSILVL GAGGVG++VIQLAK+VFGASKV
Sbjct: 194 PKNIDFVQAAGLPLAIETAYEGLEKTNFSTGKSILVLNGAGGVGSLVIQLAKNVFGASKV 253

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDK 236
           AAT+ST KL+ L+SLG DLAIDYTKENIEDLPEKFDVV+DA+G         +CDK
Sbjct: 254 AATASTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDVVYDAIG---------QCDK 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478569|ref|XP_004155355.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Cucumis sativus]

 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 178/236 (75%), Positives = 202/236 (85%), Gaps = 10/236 (4%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWVY EYG    VLKF+++V VP ++EDQVLIKVVAAALNP+D KRMLG F ATDSPL
Sbjct: 75  MKAWVYGEYGGVD-VLKFDSSVSVPEVKEDQVLIKVVAAALNPVDGKRMLGKFKATDSPL 133

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           PT+PGYDVAGVV KVGSQVK+ K GDEVYG+INEKALD PK+ GSLAEYTAVEE LLA+K
Sbjct: 134 PTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKALDGPKQFGSLAEYTAVEEKLLAVK 193

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           PKN+ FV+AA LPLA ETAYEGLE++ FS GKSILVL GAGGVG++VIQLAK+VFGASKV
Sbjct: 194 PKNIDFVQAAGLPLAIETAYEGLEKTNFSTGKSILVLNGAGGVGSLVIQLAKNVFGASKV 253

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDK 236
           AAT+ST KL+ L+SLG DLAIDYTKENIEDLPEKFDVV+DA+G         +CDK
Sbjct: 254 AATASTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDVVYDAIG---------QCDK 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434925|ref|XP_004135246.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Cucumis sativus]

 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 178/236 (75%), Positives = 202/236 (85%), Gaps = 10/236 (4%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWVY EYG    VLKF+++V VP ++EDQVLIKVVAAALNP+D KRMLG F ATDSPL
Sbjct: 75  MKAWVYGEYGGVD-VLKFDSSVSVPEVKEDQVLIKVVAAALNPVDGKRMLGKFKATDSPL 133

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           PT+PGYDVAGVV KVGSQVK+ K GDEVYG+INEKALD PK+ GSLAEYTAVEE LLA+K
Sbjct: 134 PTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKALDGPKQFGSLAEYTAVEEKLLAVK 193

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           PKN+ FV+AA LPLA ETAYEGLE++ FS GKSILVL GAGGVG++VIQLAK+VFGASKV
Sbjct: 194 PKNIDFVQAAGLPLAIETAYEGLEKTNFSTGKSILVLNGAGGVGSLVIQLAKNVFGASKV 253

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDK 236
           AAT+ST KL+ L+SLG DLAIDYTKENIEDLPEKFDVV+DA+G         +CDK
Sbjct: 254 AATASTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDVVYDAIG---------QCDK 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567630|ref|XP_003552020.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Glycine max]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 177/236 (75%), Positives = 198/236 (83%), Gaps = 10/236 (4%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWVY EYG    VLK ++NV VP ++EDQVLIKVVAAALNP+D KR  G F ATDSPL
Sbjct: 87  MKAWVYGEYGGVD-VLKLDSNVTVPDVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPL 145

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           PT+PGYDVAGVV KVGSQVK FKVGDEVYGD+NEKAL+ PK+ GSLAEYTAVEE LLA K
Sbjct: 146 PTVPGYDVAGVVVKVGSQVKDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLASK 205

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           PKNL F +AA+LPLA ETAYEGLER+ FS GKSILVL G+GGVG++VIQLAK VFGAS+V
Sbjct: 206 PKNLDFAQAAALPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLAKQVFGASRV 265

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDK 236
           AATSST  LDLL+SLGADLAIDYTKEN EDLPEKFDVV+DA+G         +CD+
Sbjct: 266 AATSSTRNLDLLKSLGADLAIDYTKENFEDLPEKFDVVYDAIG---------QCDR 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526809|ref|XP_003532009.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Glycine max]

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 177/236 (75%), Positives = 198/236 (83%), Gaps = 10/236 (4%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWVY EYG    VLK ++NV VP ++EDQVLIKVVAAALNP+D KR  G F ATDSPL
Sbjct: 89  MKAWVYGEYGGVD-VLKLDSNVAVPDVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPL 147

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           PT+PGYDVAGVV KVGSQVK FKVGDEVYGD+NEKAL+ PK+ GSLAEYTAVEE LLA K
Sbjct: 148 PTVPGYDVAGVVVKVGSQVKDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLAPK 207

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           PKNL F +AASLPLA ETAYEGLER+ FS GKSILVL G+GGVG++VIQLAK V+GAS+V
Sbjct: 208 PKNLDFAQAASLPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLAKQVYGASRV 267

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDK 236
           AATSST  LDLL+SLGADLAIDYTKEN EDLPEKFDVV+DA+G         +CD+
Sbjct: 268 AATSSTRNLDLLKSLGADLAIDYTKENFEDLPEKFDVVYDAIG---------QCDR 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568816|ref|XP_002525379.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223535342|gb|EEF37017.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 177/236 (75%), Positives = 199/236 (84%), Gaps = 10/236 (4%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWVY EYG    VLKF+  V VP ++EDQVLIKVVAAALNP+D KR  G F ATDSPL
Sbjct: 81  MKAWVYGEYGGVD-VLKFDEKVSVPEVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPL 139

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           PT+PGYDVAG+V KVGS+VK+ K GDEVYGDINEKAL+ PK+ GSLAEYTAVEE LLALK
Sbjct: 140 PTVPGYDVAGIVVKVGSKVKELKEGDEVYGDINEKALEGPKQFGSLAEYTAVEEKLLALK 199

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           PKNL FV+AASLPLA ETAYEGLER+ FSAGKSILVL G+GGVG++VIQLAKHVFGASKV
Sbjct: 200 PKNLDFVQAASLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKHVFGASKV 259

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDK 236
           AATS T  L++L+SLGADLAIDYTKEN EDLPEKFDVV+DA+G         +CD+
Sbjct: 260 AATSGTRNLEILKSLGADLAIDYTKENFEDLPEKFDVVYDAIG---------QCDR 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488941|gb|ABK96279.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  346 bits (888), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 176/236 (74%), Positives = 199/236 (84%), Gaps = 10/236 (4%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA VY EYG  + VLKF+  V VP ++EDQVLIKVVAAALNP+D KR  G F ATDSPL
Sbjct: 75  MKACVYGEYGGVE-VLKFDDKVSVPEVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPL 133

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           PT+PGYDVAGVV KVG+QVK+ K GD VYG+INEKAL+ PK+ GSLAEYTAVEE LLALK
Sbjct: 134 PTVPGYDVAGVVVKVGNQVKELKEGDAVYGNINEKALEGPKQFGSLAEYTAVEEKLLALK 193

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           PKNL F++AA LPLA ETAYEGLER+ FSAGKSILVL GAGGVG++VIQLAKHVFGAS++
Sbjct: 194 PKNLDFIQAAGLPLAIETAYEGLERTGFSAGKSILVLNGAGGVGSLVIQLAKHVFGASRI 253

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDK 236
           AATSST KL+LL+SLGADLAIDYTKEN EDLPEKFDVV+DA+G         +CDK
Sbjct: 254 AATSSTGKLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIG---------QCDK 300

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140597|ref|XP_002323668.1| predicted protein [Populus trichocarpa] gi|222868298|gb|EEF05429.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 176/236 (74%), Positives = 199/236 (84%), Gaps = 10/236 (4%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA VY EYG  + VLKF+  V VP ++EDQVLIKVVAAALNP+D KR  G F ATDSPL
Sbjct: 1   MKACVYGEYGGVE-VLKFDDKVSVPEVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPL 59

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           PT+PGYDVAGVV KVG+QVK+ K GD VYG+INEKAL+ PK+ GSLAEYTAVEE LLALK
Sbjct: 60  PTVPGYDVAGVVVKVGNQVKELKEGDAVYGNINEKALEGPKQFGSLAEYTAVEEKLLALK 119

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           PKNL F++AA LPLA ETAYEGLER+ FSAGKSILVL GAGGVG++VIQLAKHVFGAS++
Sbjct: 120 PKNLDFIQAAGLPLAIETAYEGLERTGFSAGKSILVLNGAGGVGSLVIQLAKHVFGASRI 179

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDK 236
           AATSST KL+LL+SLGADLAIDYTKEN EDLPEKFDVV+DA+G         +CDK
Sbjct: 180 AATSSTGKLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIG---------QCDK 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2034802	386	AOR "alkenal/one oxidoreductas	0.878	0.580	0.707	6e-80
TIGR_CMR|BA_3566	332	BA_3566 "alcohol dehydrogenase	0.823	0.632	0.409	2.1e-36
TIGR_CMR|BA_3435	317	BA_3435 "alcohol dehydrogenase	0.827	0.665	0.414	1.2e-35
TIGR_CMR|BA_3438	335	BA_3438 "alcohol dehydrogenase	0.847	0.644	0.393	4.1e-33
TAIR|locus:2086335	366	AT3G15090 [Arabidopsis thalian	0.839	0.584	0.36	1.6e-29
TIGR_CMR|BA_0176	302	BA_0176 "alcohol dehydrogenase	0.835	0.705	0.351	2.7e-29
ZFIN|ZDB-GENE-040426-1314	387	rtn4ip1 "reticulon 4 interacti	0.831	0.547	0.384	4.4e-29
UNIPROTKB|E2QRQ9	397	RTN4IP1 "Uncharacterized prote	0.843	0.541	0.351	8.2e-28
UNIPROTKB|F6V4D2	426	RTN4IP1 "Uncharacterized prote	0.839	0.502	0.355	8.2e-28
TIGR_CMR|BA_2113	329	BA_2113 "quinone oxidoreductas	0.941	0.729	0.347	1e-27

TAIR|locus:2034802 AOR "alkenal/one oxidoreductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 160/226 (70%), Positives = 183/226 (80%)

Query:     1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
             MKAWVY +YG    VLK E+N+ VP ++EDQVLIKVVAAALNP+D KR  G F ATDSPL
Sbjct:    78 MKAWVYSDYGGVD-VLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPL 136

Query:    61 PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
             PT+PGYDVAGVV KVGS VK  K GDEVY +++EKAL+ PK+ GSLAEYTAVEE LLALK
Sbjct:   137 PTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALK 196

Query:   121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXX 180
             PKN+ F +AA LPLA ETA EGL R+ FSAGKSILVL GAGGVG++VIQLAKHV+G    
Sbjct:   197 PKNIDFAQAAGLPLAIETADEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAKHVYGASKV 256

Query:   181 XXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC 226
                     L+L+RSLGADLAIDYTKENIEDLP+K+DVVFDA+G MC
Sbjct:   257 AATASTEKLELVRSLGADLAIDYTKENIEDLPDKYDVVFDAIG-MC 301

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0035671 "enone reductase activity" evidence=IDA

GO:0035798 "2-alkenal reductase (NADP+) activity" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

TIGR_CMR|BA_3566 BA_3566 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 93/227 (40%), Positives = 131/227 (57%)

Query:     1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSAT-DSP 59
             MKA +  +YG     +     V +P + E +VL ++ AA++NPIDFK   G         
Sbjct:     1 MKAMIIDKYGKVPMRM---AEVPIPEINEHEVLAEIHAASINPIDFKIRDGKVKMLLKYE 57

Query:    60 LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRN--GSLAEYTAVEENLL 117
             +P I G D AGV+ KVGS+V +FK+GDE+Y          P++N  G+ AEY A+ E+ +
Sbjct:    58 MPLILGNDFAGVIIKVGSKVTRFKIGDEIYA--------RPRKNKIGTFAEYIAIHEDDI 109

Query:   118 ALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFG 176
             ALKPKNLSF EAAS+PL   T+Y+ L +       + IL+  G+GGVGT  IQLAK + G
Sbjct:   110 ALKPKNLSFEEAASIPLVGLTSYQALHDIMQLQKDQKILIHAGSGGVGTFAIQLAK-IMG 168

Query:   177 XXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVG 223
                          DL++SLGAD  I+Y  E  E++ + +D VFD +G
Sbjct:   169 ATVTTTASEAGP-DLVKSLGADQIINYKTEKFEEILKDYDAVFDTIG 214

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TIGR_CMR|BA_3435 BA_3435 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 94/227 (41%), Positives = 132/227 (58%)

Query:     1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDS-P 59
             MKA    +YG+ +SVL+ E  ++ P L ++ VLI+V AA +NP+D+K   G      S  
Sbjct:     1 MKAIGLTQYGD-KSVLQ-EIEMQTPLLGDNDVLIEVYAAGVNPVDWKIREGLLQDVISYD 58

Query:    60 LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYG--DINEKALDHPKRNGSLAEYTAVEENLL 117
              P + G+DVAGVV  +G  V  FKVGDEVY   DI        +RNG+ AEY AV+E  +
Sbjct:    59 FPLVLGWDVAGVVAAIGKNVTVFKVGDEVYSRPDI--------ERNGTYAEYVAVDEKYV 110

Query:   118 ALKPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFG 176
             A KP+NLSF EAAS+PL   T+++ L + A    G  +L+  G+GG+GT  IQLAK  FG
Sbjct:   111 AKKPRNLSFEEAASIPLVGLTSWQSLVKFANVQKGNKVLIHAGSGGIGTFAIQLAKS-FG 169

Query:   177 XXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVG 223
                         +  ++ LGAD  +DY  E+   L   +++VFD +G
Sbjct:   170 AHVATTTSTKN-MQFVKDLGADTVVDYKTEDFSLLLHNYNIVFDVLG 215

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TIGR_CMR|BA_3438 BA_3438 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 92/234 (39%), Positives = 131/234 (55%)

Query:     1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
             MKA +   +G+S SV + E  V  P L    VLI V A ++NPID K   GA SA     
Sbjct:     1 MKAQIIHSFGDS-SVFQLE-EVSKPKLLPGHVLIDVKATSVNPIDTKMRSGAVSAVAPEF 58

Query:    61 PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
             P I   DVAG+V +VG  V KFK GDEVYG     A    +  G+LAE+   +  L+A K
Sbjct:    59 PAILHGDVAGIVIEVGEGVSKFKCGDEVYGC----AGGFKETGGALAEFMLADARLIAHK 114

Query:   121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXX 179
             P N++  EAA+LPL   TA+E L +R+   +G+++L+ G  GGVG + IQLAK   G   
Sbjct:   115 PNNITMEEAAALPLVAITAWESLFDRANIKSGQNVLIHGATGGVGHVAIQLAKWA-GANV 173

Query:   180 XXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEK----------FDVVFDAVG 223
                      +++   LGAD+AI+Y +E++++  ++          F+V+FD VG
Sbjct:   174 FTTASQQNKMEIAHRLGADVAINYKEESVQESVQEYVQKHTNGNGFEVIFDTVG 227

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TAIR|locus:2086335 AT3G15090 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 81/225 (36%), Positives = 123/225 (54%)

Query:     2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP-L 60
             +A +   +G  + V +   NV VP+L  ++VL+K  A ++NP+D +   G   +   P L
Sbjct:    33 RAVILPRFGGPE-VFELRENVPVPNLNPNEVLVKAKAVSVNPLDCRIRAGYGRSVFQPHL 91

Query:    61 PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
             P I G DV+G V  +G+ VK  KVG EV+G ++  AL      G+  +Y  + E+ L  K
Sbjct:    92 PIIVGRDVSGEVAAIGTSVKSLKVGQEVFGALHPTAL-----RGTYTDYGILSEDELTEK 146

Query:   121 PKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGXXX 179
             P ++S VEA+++P A  TA+  L+ +A  + G+ +LV GG G VG   IQLA  V     
Sbjct:   147 PSSISHVEASAIPFAALTAWRALKSNARITEGQRLLVFGGGGAVGFSAIQLA--VASGCH 204

Query:   180 XXXXXXXXXLDLLRSLGADLAIDYTKENIE-DLPEKFDVVFDAVG 223
                       D + + GA+ A+DYT E+IE  +  KFD V D +G
Sbjct:   205 VTASCVGQTKDRILAAGAEQAVDYTTEDIELAVKGKFDAVLDTIG 249

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TIGR_CMR|BA_0176 BA_0176 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 83/236 (35%), Positives = 131/236 (55%)

Query:     1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALN-----------PIDFKRM 49
             MKA +  +YG   +VL+ + N+E P  ++++VL+K+ A +++           P+ F   
Sbjct:     1 MKAIICTQYG-PPNVLQLQ-NIEKPIPKKNEVLVKIHATSVSTGDCRIRGFNSPLLFWIP 58

Query:    50 LGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEY 109
             +        P   I G ++AG +E +G+ V +FK GD+++  + E  L      G  AEY
Sbjct:    59 MRLILGLRKPRNPILGVELAGEIEDIGTDVTQFKKGDQIFA-LTELNL------GGYAEY 111

Query:   110 TAVEEN-LLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVI 168
             T V E+ L+ LKP N+++ EAA +P    +A   L +S    G+ +L+ G +G VGT  I
Sbjct:   112 TCVHESGLITLKPTNVTYEEAAVIPFGGTSALHFLRKSRIKKGQQVLIYGASGSVGTAAI 171

Query:   169 QLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGK 224
             QLAK+ FG             +L++SLGAD  IDYTKE+     E++D++FDAVGK
Sbjct:   172 QLAKY-FGATVTAVCSNSN-FELVQSLGADKVIDYTKEDFTKRRERYDIIFDAVGK 225

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

ZFIN|ZDB-GENE-040426-1314 rtn4ip1 "reticulon 4 interacting protein 1" [Danio rerio (taxid:7955)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 95/247 (38%), Positives = 130/247 (52%)

Query:     1 MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLGAFSATD-- 57
             M AWV  +YG +  VL+F  N  +P +   ++V++KV AA LNPID   M G + A    
Sbjct:    29 MPAWVIDKYGKND-VLRFTKNAALPIIHYPNEVVVKVHAAGLNPIDIS-MRGGYGAATMA 86

Query:    58 ---SPL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGS 105
                 PL         P I G DV+G + + G  VK FK GD+V+  I       P + GS
Sbjct:    87 MKRDPLNISQSGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIP------PWKQGS 140

Query:   106 LAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE------GLERSAFSAGKSILVLGG 159
             LAE+  V  N ++ KPK+L   EAAS+P    TA+       GL +   SA K +L+LGG
Sbjct:   141 LAEFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDN-SAKKRVLILGG 199

Query:   160 AGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIE-DLP--EKFD 216
             +GGVGT  IQ+ K  +G              L+R LGAD  +DYT   +E  L   EKFD
Sbjct:   200 SGGVGTFAIQMVK-AWGAHVTVTCSQNAER-LVRDLGADDVVDYTAGPVEKQLKNLEKFD 257

Query:   217 VVFDAVG 223
             ++ D++G
Sbjct:   258 LILDSIG 264

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2QRQ9 RTN4IP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 86/245 (35%), Positives = 126/245 (51%)

Query:     1 MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLG----AFSA 55
             M AWV  +YG ++ VL+F  N+ +P +   ++V+IKV AA++NPID     G    A + 
Sbjct:    43 MPAWVIDKYGKNE-VLRFTQNMMIPVIHYPNEVIIKVHAASVNPIDVNMRSGYGATALNM 101

Query:    56 TDSPL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSL 106
                PL         P   G DV+GVV + G  V+ FK GDEV+  +       P + G+L
Sbjct:   102 KRDPLHIKTKGEEFPLTLGRDVSGVVMECGLDVRYFKPGDEVWAAVP------PWKQGTL 155

Query:   107 AEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-----SAFSAGKSILVLGGAG 161
             +E+  V  N ++LKPK+L+  +AASLP    TA+  + +          GK +L+LG +G
Sbjct:   156 SEFVVVNGNEVSLKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASG 215

Query:   162 GVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEK---FDVV 218
             GVGT  IQ     +              +L+R LGAD  IDY   N+E+  +    FD +
Sbjct:   216 GVGTFAIQQVMKAWDAHVTAVCSQDAS-ELVRKLGADDVIDYKSGNVEEQLKSLKPFDFI 274

Query:   219 FDAVG 223
              D VG
Sbjct:   275 LDNVG 279

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F6V4D2 RTN4IP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 87/245 (35%), Positives = 127/245 (51%)

Query:     1 MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLG----AFSA 55
             M AWV  +YG ++ VL+F  N+ +P +   ++V+IKV AA++NPID     G    A + 
Sbjct:    73 MPAWVIDKYGKNE-VLRFTQNMMIPVIHYPNEVIIKVHAASVNPIDVNMRSGYGATALNM 131

Query:    56 TDSPL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSL 106
                PL         P   G DV+GVV + G  V+ FK GDEV+  +       P + G+L
Sbjct:   132 KRDPLHIKTKGEEFPLTLGRDVSGVVMECGLDVRYFKPGDEVWAAVP------PWKQGTL 185

Query:   107 AEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-----SAFSAGKSILVLGGAG 161
             +E+  V  N ++LKPK+L+  +AASLP    TA+  + +          GK +L+LG +G
Sbjct:   186 SEFVVVNGNEVSLKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASG 245

Query:   162 GVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEK---FDVV 218
             GVGT  IQ+ K                 +L+R LGAD  IDY   N+E+  +    FD +
Sbjct:   246 GVGTFAIQVMKA--WDAHVTAVCSQDASELVRKLGADDVIDYKSGNVEEQLKSLKPFDFI 303

Query:   219 FDAVG 223
              D VG
Sbjct:   304 LDNVG 308

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TIGR_CMR|BA_2113 BA_2113 "quinone oxidoreductase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 91/262 (34%), Positives = 133/262 (50%)

Query:     1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
             MKA V   +G S+ V+K+ T+V++P++ EDQVLI+VVA ++N  D K   G     +  L
Sbjct:     2 MKAIVVTSFGGSE-VMKY-TDVDIPAISEDQVLIRVVATSVNFADIKSRYG--KKGNKAL 57

Query:    61 PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
             P I G D AG+VE+VGS VK    G  V        +  P+ NGS AEY    ENL  + 
Sbjct:    58 PFILGIDAAGIVERVGSHVKNIYPGQRV--------IAFPQ-NGSYAEYVVANENLTFVL 108

Query:   121 PKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGXXX 179
             P  + F  AA+ P+ + T+Y  L   A    G+S+L+   AGG+GT  IQLAK +     
Sbjct:   109 PDEVDFQTAAACPIVSFTSYNLLANVARLQQGESVLIHAAAGGIGTTAIQLAKLLGAGTV 168

Query:   180 XXXXXXXXXLDLLRSLGADLAIDYTKEN----IEDLP--EKFDVVFDAVGKMCISIVYQK 233
                       ++    GAD  I +  E+    + +L   E  DV+ D++    +S    K
Sbjct:   169 IGTVGSEAKKEIALDAGADYVIGHQDEDFVEKVNELTNGEGVDVILDSISGT-VSERSLK 227

Query:   234 CDKFQEKSLINFGLFRQEVPKF 255
             C  +  + LI+FG    E+  F
Sbjct:   228 CLAYYGR-LIHFGNASGEIGNF 248

GO:0003960 "NADPH:quinone reductase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZUC1	QORL_ARATH	1, ., -, ., -, ., -	0.7522	0.8784	0.5803	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-89
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	1e-79
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	8e-76
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	5e-67
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	3e-66
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	4e-60
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	2e-59
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	8e-59
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	6e-52
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	9e-52
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	3e-51
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	1e-50
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	2e-49
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	9e-44
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	1e-42
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	8e-42
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	1e-41
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	4e-41
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	2e-40
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	7e-40
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	3e-39
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	1e-38
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	1e-37
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	4e-37
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	8e-37
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	4e-36
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	5e-36
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	1e-35
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	6e-35
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	6e-35
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	8e-35
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	8e-34
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	1e-32
smart00829	287	smart00829, PKS_ER, Enoylreductase	2e-32
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	3e-31
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	6e-31
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	2e-30
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	1e-29
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	7e-29
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	2e-27
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	8e-27
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	8e-27
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-26
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	2e-26
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	1e-25
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	2e-25
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	1e-24
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	2e-24
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	2e-24
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	9e-24
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	1e-23
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	1e-23
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	2e-23
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	2e-23
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	8e-23
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-22
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	1e-22
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	6e-22
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	2e-21
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	6e-21
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	2e-20
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	3e-20
cd05281	341	cd05281, TDH, Threonine dehydrogenase	9e-19
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	1e-18
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	2e-18
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	1e-17
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	3e-17
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	5e-17
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	8e-17
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	8e-17
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	1e-16
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	3e-16
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	4e-16
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	1e-15
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-15
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	1e-15
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	4e-15
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	7e-15
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	5e-14
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	2e-13
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	2e-13
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	4e-13
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	1e-12
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	1e-12
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	3e-12
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	7e-12
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	9e-12
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	5e-11
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	1e-10
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	3e-10
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	4e-10
cd08295	338	cd08295, double_bond_reductase_like, Arabidopsis a	6e-10
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	8e-10
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	2e-09
cd08293	345	cd08293, PTGR2, Prostaglandin reductase	2e-09
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	2e-09
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	2e-09
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	7e-09
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	3e-08
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	8e-08
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	6e-07
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	7e-07
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	1e-06
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	2e-06
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	2e-06
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	5e-06
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	7e-06
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	2e-05
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	5e-05
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	5e-05
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-04
pfam13602	129	pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenas	2e-04
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	4e-04
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	7e-04
TIGR01202	308	TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacter	8e-04
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	0.001

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score =  266 bits (683), Expect = 2e-89
 Identities = 109/227 (48%), Positives = 131/227 (57%), Gaps = 14/227 (6%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFS-ATDSP 59
           MKA    EYG    VL+   +V  P     +VL+KV AA +NP+D K   G    A    
Sbjct: 1   MKAVRIHEYGGP-EVLE-LADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLT 58

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLAL 119
           LP IPG+DVAGVV  VG  V  FKVGDEV+G           R G+ AEY  V  + LAL
Sbjct: 59  LPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFT------RGGAYAEYVVVPADELAL 112

Query: 120 KPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGAS 178
           KP NLSF EAA+LPLA  TA++ L       AG+++L+ G AGGVG+  +QLAK   GA 
Sbjct: 113 KPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKA-RGA- 170

Query: 179 KVAATSSTAKLDLLRSLGADLAIDYTKENIE--DLPEKFDVVFDAVG 223
           +V AT+S A  D LRSLGAD  IDYTK + E    P   D V D VG
Sbjct: 171 RVIATASAANADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVG 217

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  242 bits (619), Expect = 1e-79
 Identities = 101/226 (44%), Positives = 135/226 (59%), Gaps = 13/226 (5%)

Query: 4   WVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFK-RMLGAFSATDSPLPT 62
            VY  YG+ + +L  E  V +P+ +  +VL+KV AA++NP+D+K R          P P 
Sbjct: 1   VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60

Query: 63  IPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPK 122
           IPG D AG V  VGS V +FKVGDEV+G +       PK  G+LAEY    E+ LA KP+
Sbjct: 61  IPGMDFAGEVVAVGSGVTRFKVGDEVFGRLP------PKGGGALAEYVVAPESGLAKKPE 114

Query: 123 NLSFVEAASLPLATETAYEGLERSAFS-AGKSILVLGGAGGVGTMVIQLAKHVFGASKVA 181
            +SF EAA+LP+A  TA + L  +     G+ +L+ G +GGVGT  +Q+AK   GA  V 
Sbjct: 115 GVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKA-LGA-HVT 172

Query: 182 ATSSTAKLDLLRSLGADLAIDYTKENIEDL---PEKFDVVFDAVGK 224
              ST   +L+RSLGAD  IDYT E+   L    EK+DV+FDAVG 
Sbjct: 173 GVCSTRNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGN 218

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  232 bits (594), Expect = 8e-76
 Identities = 110/229 (48%), Positives = 138/229 (60%), Gaps = 15/229 (6%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V + +G    V +    V  P     QVL++V A+ +NP+D K   G  +A   PL
Sbjct: 1   MKALVLESFGGP-EVFE-LREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARP-PL 57

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P I G DVAGVVE VG  V +F+VGDEVYG             GSLAEY  V+  LLALK
Sbjct: 58  PAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLG----GLQGSLAEYAVVDARLLALK 113

Query: 121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P NLS  EAA+LPL   TA+EGL +R+A  AG+++L+ GGAGGVG + +QLAK   GA +
Sbjct: 114 PANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKA-AGA-R 171

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK-----FDVVFDAVG 223
           V AT+S+ K    RSLGAD  I Y +  +E + E      FDVVFD VG
Sbjct: 172 VYATASSEKAAFARSLGADPIIYYRETVVEYVAEHTGGRGFDVVFDTVG 220

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score =  210 bits (538), Expect = 5e-67
 Identities = 106/246 (43%), Positives = 136/246 (55%), Gaps = 31/246 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLRE-DQVLIKVVAAALNPID-------------F 46
           MKAW    YG   S+L  E N  +P +R+ +QVLIKV AA++NPID              
Sbjct: 1   MKAWQIHSYGGIDSLLLLE-NARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNK 59

Query: 47  KRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSL 106
           KR   +   +    P   G D +GVV  +GS VK F++GDEV+G +       P   G+ 
Sbjct: 60  KRKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAV------PPWSQGTH 113

Query: 107 AEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-----FSAGKSILVLGGAG 161
           AEY  V EN ++ KPKNLS  EAASLP A  TA+  L          +AGK +L+LGG+G
Sbjct: 114 AEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSG 173

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED---LPEKFDVV 218
           GVGT  IQL K  +GA  V  T ST  + L++SLGAD  IDY  E+ E+      KFDV+
Sbjct: 174 GVGTFAIQLLKA-WGA-HVTTTCSTDAIPLVKSLGADDVIDYNNEDFEEELTERGKFDVI 231

Query: 219 FDAVGK 224
            D VG 
Sbjct: 232 LDTVGG 237

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  208 bits (531), Expect = 3e-66
 Identities = 102/230 (44%), Positives = 126/230 (54%), Gaps = 17/230 (7%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V +E+G    VLK    V  P     +VL++V AA +NPID     G       PL
Sbjct: 1   MKAVVVEEFG-GPEVLKVVE-VPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVR-PL 57

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P IPG + AGVV  VGS V  FKVGD V       AL    R+G  AEY  V  + L   
Sbjct: 58  PFIPGSEAAGVVVAVGSGVTGFKVGDRVA------ALGGVGRDGGYAEYVVVPADWLVPL 111

Query: 121 PKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P  LSF EAA+LPLA  TA+  L   A    G+++LV G AGGVG+  IQLAK   GA+ 
Sbjct: 112 PDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKA-LGATV 170

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIED------LPEKFDVVFDAVG 223
           VA  SS+ KL+LL+ LGAD  I+Y +E+  +        +  DVV D VG
Sbjct: 171 VAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG 220

Length = 326

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score =  192 bits (491), Expect = 4e-60
 Identities = 87/241 (36%), Positives = 116/241 (48%), Gaps = 27/241 (11%)

Query: 1   MKA-WVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP 59
            KA  +    G    V     +V VP    D+VL+KV A ALNP+D+K     F      
Sbjct: 1   QKAAVLTGPGGGLLVV----VDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI---PS 53

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLAL 119
            P I G D AG V +VGS V +FKVGD V G ++     +  RNG+  EY   + +L A 
Sbjct: 54  YPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHG-GNPNDPRNGAFQEYVVADADLTAK 112

Query: 120 KPKNLSFVEAASLPLATETAYEGL-----------ERSAFSAGKSILVLGGAGGVGTMVI 168
            P N+SF EAA+LP+   TA   L           + S  S GK +L+ GG+  VGT+ I
Sbjct: 113 IPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAI 172

Query: 169 QLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED-----LPEKFDVVFDAVG 223
           QLAK      KV  T+S    DL++SLGAD   DY   ++ +        K     D + 
Sbjct: 173 QLAKLAGY--KVITTASPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCIS 230

Query: 224 K 224
            
Sbjct: 231 T 231

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score =  191 bits (487), Expect = 2e-59
 Identities = 86/213 (40%), Positives = 120/213 (56%), Gaps = 21/213 (9%)

Query: 1   MKAWVYKEYGNSQSVLKFET-NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP 59
           MKA  + +              +  P      +L++V A ++NP+D K   G   A    
Sbjct: 1   MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGG--APVPG 58

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVY--GDINEKALDHPKRNGSLAEYTAVEENLL 117
            P I G+D +GVVE VGS+V  FKVGDEVY  GDI         R GS AEY  V+E ++
Sbjct: 59  QPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGDIT--------RPGSNAEYQLVDERIV 110

Query: 118 ALKPKNLSFVEAASLPLATETAYEGL------ERSAFSAGKSILVLGGAGGVGTMVIQLA 171
             KPK+LSF EAA+LPL + TA+E L         A + GK++L++GGAGGVG++ IQLA
Sbjct: 111 GHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLA 170

Query: 172 KHVFGASKVAATSSTAK-LDLLRSLGADLAIDY 203
           K + G   V AT+S  + +  ++ LGAD  I++
Sbjct: 171 KQLTGL-TVIATASRPESIAWVKELGADHVINH 202

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  189 bits (481), Expect = 8e-59
 Identities = 94/233 (40%), Positives = 125/233 (53%), Gaps = 23/233 (9%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWV  +   +   L  E  +E+P     +VL+KV AA LNP+D+K +     A     
Sbjct: 1   MKAWVLPK-PGAALQLTLEE-IEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA--WSY 56

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVY--GDINEKALDHPKRNGSLAEYTAVEENLLA 118
           P +PG D AGVV  VG++V  +KVGD V     +         R GS AEYT V+   + 
Sbjct: 57  PHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASL--------ARGGSFAEYTVVDARAVL 108

Query: 119 LKPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGA 177
             P +LSF EAA+LP A  TAY+ L +     AG++IL+ GGAGGVG+  +QLAK   G 
Sbjct: 109 PLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKR-AGL 167

Query: 178 SKVAATSSTAKLDLLRSLGADLAIDYTKEN-IEDLPE-----KFDVVFDAVGK 224
            +V  T S    + ++SLGAD  IDY  E+  E + E       D V D VG 
Sbjct: 168 -RVITTCSKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGG 219

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score =  171 bits (435), Expect = 6e-52
 Identities = 82/227 (36%), Positives = 120/227 (52%), Gaps = 15/227 (6%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+A  Y E+G    VL+   ++ VP+    +VL++V A+ +NP+D     GA+     PL
Sbjct: 1   MRAIRYHEFGAP-DVLR-LGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAY-PGLPPL 57

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P +PG D AGVVE VG  V   KVGD V+  +    L   +R G+ AEY  V  + L   
Sbjct: 58  PYVPGSDGAGVVEAVGEGVDGLKVGDRVW--LTN--LGWGRRQGTAAEYVVVPADQLVPL 113

Query: 121 PKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P  +SF + A+L +   TAY  L   A   AG+++LV GG+G VG   +QLA+   GA  
Sbjct: 114 PDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARW-AGARV 172

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIED------LPEKFDVVFD 220
           +A  SS    +L+R  GAD   +Y  E++ D        +  DV+ +
Sbjct: 173 IATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIE 219

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  169 bits (430), Expect = 9e-52
 Identities = 81/214 (37%), Positives = 103/214 (48%), Gaps = 25/214 (11%)

Query: 31  QVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYG 90
           +VL++V AA L   D     G +      LP I G++ AGVV +VG  V   KVGD V  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPP-KLPLILGHEGAGVVVEVGPGVTGVKVGDRVVV 59

Query: 91  DIN--------------EKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLAT 136
             N                 +     +G  AEY  V  + L   P  LS  EAA LP   
Sbjct: 60  LPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPL 119

Query: 137 ETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-KLDLLRS 194
            TAY  L R+     G ++LVL GAGGVG +  QLAK   GA +V  T  +  KL+L + 
Sbjct: 120 ATAYHALRRAGVLKPGDTVLVL-GAGGVGLLAAQLAKA-AGA-RVIVTDRSDEKLELAKE 176

Query: 195 LGADLAIDYTKENIEDL-----PEKFDVVFDAVG 223
           LGAD  IDY +E++E+          DVV DAVG
Sbjct: 177 LGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG 210

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score =  169 bits (431), Expect = 3e-51
 Identities = 91/235 (38%), Positives = 123/235 (52%), Gaps = 30/235 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V KE G  + VL+    V  P+    +VLI+V AA +N  D  +  G +     P 
Sbjct: 1   MKAIVIKEPGGPE-VLELGE-VPKPAPGPGEVLIRVAAAGVNRADLLQRQGLY-----PP 53

Query: 61  P----TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENL 116
           P     I G +VAGVV  VG  V  +KVGD V   +           G  AEY  V    
Sbjct: 54  PPGASDILGLEVAGVVVAVGPGVTGWKVGDRVCALLA---------GGGYAEYVVVPAGQ 104

Query: 117 LALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF 175
           L   P+ LS VEAA+LP    TA++ L +     AG+++L+ GGA GVGT  IQLAK   
Sbjct: 105 LLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKA-L 163

Query: 176 GASKVAATSSTA-KLDLLRSLGADLAIDYTKENIEDLPEKF------DVVFDAVG 223
           GA +V AT+ +  KL+  R+LGAD+AI+Y  E+  +  ++       DV+ D VG
Sbjct: 164 GA-RVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVG 217

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  167 bits (426), Expect = 1e-50
 Identities = 96/233 (41%), Positives = 115/233 (49%), Gaps = 26/233 (11%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V KE G     L  E     P     +V I+V AA +N  D   + G +     PL
Sbjct: 1   MKAVVCKELG-GPEDLVLEEVPPEPGA-PGEVRIRVEAAGVNFPDLLMIQGKYQVKP-PL 57

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P +PG +VAGVVE VG  V  FKVGD V               G  AE   V    +   
Sbjct: 58  PFVPGSEVAGVVEAVGEGVTGFKVGDRVVA-----LTGQ----GGFAEEVVVPAAAVFPL 108

Query: 121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P  LSF EAA+LP+   TAY  L  R+    G+++LVLG AGGVG   +QLAK   GA  
Sbjct: 109 PDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKA-LGARV 167

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKF---------DVVFDAVG 223
           +AA SS  KL L R+LGAD  IDY      DL E+          DVV+D VG
Sbjct: 168 IAAASSEEKLALARALGADHVIDYRD---PDLRERVKALTGGRGVDVVYDPVG 217

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  165 bits (420), Expect = 2e-49
 Identities = 94/251 (37%), Positives = 122/251 (48%), Gaps = 35/251 (13%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPID-FKRMLGAFSATDSP 59
           MKA V + +G  + VL++   +  P    D+VL++V AAALN +D + R          P
Sbjct: 1   MKAVVIRGHGGPE-VLEYGD-LPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGI--KLP 56

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEV--YGDIN----EKALD--------------H 99
           LP I G D AGVVE VG  V   K G  V  Y  I+    E  L               H
Sbjct: 57  LPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEH 116

Query: 100 PKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLG 158
              +G  AEY AV    L   P NLSF EAA+ PL   TA+  L  R+    G+++LV G
Sbjct: 117 --VDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHG 174

Query: 159 GAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKF--- 215
              GVG+  IQ+AK  FGA+ +A   S  KL+  + LGAD  IDY KE+      +    
Sbjct: 175 AGSGVGSAAIQIAKL-FGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGK 233

Query: 216 ---DVVFDAVG 223
              DVV + VG
Sbjct: 234 RGVDVVVEHVG 244

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  150 bits (381), Expect = 9e-44
 Identities = 77/218 (35%), Positives = 99/218 (45%), Gaps = 18/218 (8%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAW     G     LK      VP     +VL++V A +LN  D   + G +       
Sbjct: 1   MKAWRLSG-GGGLDNLKLVE-EPVPEPGPGEVLVRVHAVSLNYRDLLILNGRY-PPPVKD 57

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV---------YGDINEKALDH---PKRNGSLAE 108
           P IP  D AG V  VG  V +FKVGD V          G    +          +G LAE
Sbjct: 58  PLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAE 117

Query: 109 YTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMV 167
           Y  + E  L   P +LSF EAA+LP A  TA+  L        G ++LV  G GGV    
Sbjct: 118 YVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQ-GTGGVSLFA 176

Query: 168 IQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK 205
           +Q AK   GA  +A +SS  KL+  ++LGAD  I+Y  
Sbjct: 177 LQFAK-AAGARVIATSSSDEKLERAKALGADHVINYRT 213

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  147 bits (373), Expect = 1e-42
 Identities = 83/246 (33%), Positives = 113/246 (45%), Gaps = 32/246 (13%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V K++G    +      V VP     +VLIKV A  +   D     G +      L
Sbjct: 4   MKAAVLKKFGQPLEI----EEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDW--PVPKL 57

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-------------Y---GDINEKALDHPK--- 101
           P IPG+++ G V +VG  V   KVGD V             Y   G  NE    + K   
Sbjct: 58  PLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSG--NENLCPNQKITG 115

Query: 102 --RNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGG 159
              +G  AEY  V    +   P+ L   EAA L  A  T Y  L+++    GK + V+ G
Sbjct: 116 YTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANVKPGKWVAVV-G 174

Query: 160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IEDLPEKFDVV 218
           AGG+G M +Q AK   GA  +A T S  KL+L + LGAD  I+ +  + +E + E  D +
Sbjct: 175 AGGLGHMAVQYAK-AMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAI 233

Query: 219 FDAVGK 224
            D VG 
Sbjct: 234 IDTVGP 239

Length = 339

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score =  144 bits (367), Expect = 8e-42
 Identities = 85/237 (35%), Positives = 112/237 (47%), Gaps = 36/237 (15%)

Query: 2   KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPID--FKRMLGAFSATDSP 59
           KA    + G    VL++E  V VP     +VL++  A  +N ID  F+  L        P
Sbjct: 1   KAVRIHKTGGP-EVLEYED-VPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYP-----LP 53

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEV-YGDINEKALDHPKRNGSLAEYTAVEENLLA 118
           LP + G + AGVVE VG  V  FKVGD V Y              G+ AEY  V  + L 
Sbjct: 54  LPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAGP----------PGAYAEYRVVPASRLV 103

Query: 119 LKPKNLSFVEAASLPLATETAYEGLERSAFS--AGKSILVLGGAGGVGTMVIQLAKHVFG 176
             P  +S   AA+L L   TA+  L R  +    G ++LV   AGGVG ++ Q AK   G
Sbjct: 104 KLPDGISDETAAALLLQGLTAH-YLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKA-LG 161

Query: 177 ASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK---------FDVVFDAVGK 224
           A+ +   SS  K +L R+ GAD  I+Y     ED  E+          DVV+D VGK
Sbjct: 162 ATVIGTVSSEEKAELARAAGADHVINYRD---EDFVERVREITGGRGVDVVYDGVGK 215

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  144 bits (366), Expect = 1e-41
 Identities = 84/232 (36%), Positives = 116/232 (50%), Gaps = 19/232 (8%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPID--FKRMLGAFSATDS 58
           M+A  + ++G    VL+ E  + VP+    +VLI+V A  LN  D  F+R  GA+     
Sbjct: 1   MRAVRFHQFGGP-EVLRIEE-LPVPAPGAGEVLIRVEAIGLNRADAMFRR--GAYIE-PP 55

Query: 59  PLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLA 118
           PLP   GY+ AGVVE VG+ V  F VGD V    +        + G+ AEY  V    + 
Sbjct: 56  PLPARLGYEAAGVVEAVGAGVTGFAVGDRV----SVIPAADLGQYGTYAEYALVPAAAVV 111

Query: 119 LKPKNLSFVEAASLPLATETAYEGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGA 177
             P  LSFVEAA+L +   TAY  L   A    G S+L+   +  VG   IQ+A    GA
Sbjct: 112 KLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAA-GA 170

Query: 178 SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKF------DVVFDAVG 223
           + +A T ++ K D L +LGA   I   +E++     +       DVVFD VG
Sbjct: 171 TVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVG 222

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score =  143 bits (362), Expect = 4e-41
 Identities = 85/234 (36%), Positives = 116/234 (49%), Gaps = 28/234 (11%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA    E G  + VL     V +P  +  +VLI+V AA +N  D  +  G +     P 
Sbjct: 1   MKAIEITEPGGPE-VLVLVE-VPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKY-----PP 53

Query: 61  P----TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENL 116
           P     I G +VAG V  VG  V ++KVGD V   +           G  AEY AV    
Sbjct: 54  PPGASDILGLEVAGEVVAVGEGVSRWKVGDRVCALVA---------GGGYAEYVAVPAGQ 104

Query: 117 LALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF 175
           +   P+ LS VEAA+LP    T +  L +R    AG+++L+ GGA G+GT  IQLAK  F
Sbjct: 105 VLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAK-AF 163

Query: 176 GASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IEDLPEK-----FDVVFDAVG 223
           GA       S  K     +LGAD+AI+Y +E+ +E +  +      DV+ D VG
Sbjct: 164 GARVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVG 217

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  141 bits (358), Expect = 2e-40
 Identities = 79/229 (34%), Positives = 107/229 (46%), Gaps = 21/229 (9%)

Query: 2   KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPID-FKRMLGAFSATDSPL 60
           +A V   +G     LK E    +P     +V ++V A  LN  D   R  G + +     
Sbjct: 1   RAVVLTGFG-GLDKLKVEKE-ALPEPSSGEVRVRVEACGLNFADLMARQ-GLYDSA-PKP 56

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P +PG++ AG VE VG  VK FKVGD V G      L    R G  AE   V  + +   
Sbjct: 57  PFVPGFECAGTVEAVGEGVKDFKVGDRVMG------LT---RFGGYAEVVNVPADQVFPL 107

Query: 121 PKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P  +SF EAA+ P+   TAY  L        G+S+LV   AGGVG    QL K V   + 
Sbjct: 108 PDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVT- 166

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIED-----LPEKFDVVFDAVG 223
           V  T+S +K + L+  G    IDY  ++  +      PE  D+V DA+G
Sbjct: 167 VVGTASASKHEALKENGVTHVIDYRTQDYVEEVKKISPEGVDIVLDALG 215

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score =  140 bits (356), Expect = 7e-40
 Identities = 80/236 (33%), Positives = 117/236 (49%), Gaps = 28/236 (11%)

Query: 9   YGNSQSVLKFETNVEVP---SLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPG 65
           + N+ S L   T +++P     +++++++KV AAALNP+D K               + G
Sbjct: 6   FKNNTSPLT-ITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGL-G 63

Query: 66  YDVAGVVEKVGSQVKK-FKVGDEVYGDINEKALDHP-KRNGSLAEY----TAVEENLLAL 119
            D +GV+ KVGS V   +KVGDEV G        HP    G+L++Y       ++  +  
Sbjct: 64  RDYSGVIVKVGSNVASEWKVGDEVCG-----IYPHPYGGQGTLSQYLLVDPKKDKKSITR 118

Query: 120 KPKNLSFVEAASLPLATETAYEGLE--RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA 177
           KP+N+S  EAA+ PL   TAY+ LE           +LVLGG+  VG   IQLAK+ +  
Sbjct: 119 KPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNI 178

Query: 178 SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL----------PEKFDVVFDAVG 223
             V  T S+   +L + LGAD  IDY   +   L            KFD++ D VG
Sbjct: 179 GTVVGTCSSRSAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVG 234

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score =  138 bits (350), Expect = 3e-39
 Identities = 74/196 (37%), Positives = 115/196 (58%), Gaps = 18/196 (9%)

Query: 18  FETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGS 77
            + ++  P      +L++V A ++NP+D K  + A  A ++  P I G+D AGVV  VG 
Sbjct: 18  VDIDLPKPKPGGRDLLVEVKAISVNPVDTK--VRARMAPEAGQPKILGWDAAGVVVAVGD 75

Query: 78  QVKKFKVGDEVY--GDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLA 135
           +V  FK GDEV+  GDI+        R GS AE+  V+E ++  KPK+LSF EAA+LPL 
Sbjct: 76  EVTLFKPGDEVWYAGDID--------RPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLT 127

Query: 136 TETAYE------GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL 189
           + TA+E      G+        +++L++GGAGGVG+++IQLA+ + G + +A  S     
Sbjct: 128 SITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQ 187

Query: 190 DLLRSLGADLAIDYTK 205
           + +  LGA   ID++K
Sbjct: 188 EWVLELGAHHVIDHSK 203

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score =  136 bits (345), Expect = 1e-38
 Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 33/244 (13%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V+++ G     LK E +V+ P     +VLI+V  A +NP+D+  ++ A      P+
Sbjct: 1   MKALVFEKSGIEN--LKVE-DVKDPKPGPGEVLIRVKMAGVNPVDY-NVINAVKV--KPM 54

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV--YGDI-----------NEKALDHPKR----- 102
           P IPG + AGVVE+VG  VK  K GD V  Y  +           NE    +        
Sbjct: 55  PHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVS 114

Query: 103 NGSLAEYTAVEE-NLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG 161
           NG  AEY  V E NL  + P ++S   AASLP+A  TAY  L+ +    G++++V G +G
Sbjct: 115 NGGYAEYIVVPEKNLFKI-PDSISDELAASLPVAALTAYHALKTAGLGPGETVVVFGASG 173

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK--ENIEDLPEKFDVVF 219
             G   +QLAK + GA +V A S     D L+  GAD  +DY +  E ++++ +  DVV 
Sbjct: 174 NTGIFAVQLAK-MMGA-EVIAVSRK---DWLKEFGADEVVDYDEVEEKVKEITKMADVVI 228

Query: 220 DAVG 223
           +++G
Sbjct: 229 NSLG 232

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score =  133 bits (337), Expect = 1e-37
 Identities = 68/169 (40%), Positives = 91/169 (53%), Gaps = 18/169 (10%)

Query: 30  DQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVY 89
           D+V ++V AA LN  D    LG     ++PL    G + +G+V +VGS V   KVGD V 
Sbjct: 1   DEVEVEVKAAGLNFRDVLVALGLLPGDETPL----GLECSGIVTRVGSGVTGLKVGDRVM 56

Query: 90  GDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-F 148
           G             G+ A +  V+  L+   P +LSF EAA+LP+A  TAY  L   A  
Sbjct: 57  GLA----------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARL 106

Query: 149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLG 196
             G+S+L+   AGGVG   IQLA+H+ GA +V AT  S  K + LR LG
Sbjct: 107 QKGESVLIHAAAGGVGQAAIQLAQHL-GA-EVFATVGSEEKREFLRELG 153

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  133 bits (336), Expect = 4e-37
 Identities = 76/250 (30%), Positives = 120/250 (48%), Gaps = 39/250 (15%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V    G+    L++E ++  P     +VL+KV A  +   D  R LG  +      
Sbjct: 1   MKALVLTGPGD----LRYE-DIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY---HP 52

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV------------YGDINEKAL-DH-----PKR 102
           P + G++ +G VE+VGS V    VGD V            Y    E +L  +      +R
Sbjct: 53  PLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRR 112

Query: 103 NGSLAEYTAV-EENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLGGA 160
           +G+ AEY +V   NL+ + P ++ + EAA + P A   A   +  +  + G +++V+ GA
Sbjct: 113 DGAFAEYVSVPARNLIKI-PDHVDYEEAAMIEPAA--VALHAVRLAGITLGDTVVVI-GA 168

Query: 161 GGVGTMVIQLAKHVFGASKVAATSSTA-KLDLLRSLGADLAIDYTKENIEDLPEK----- 214
           G +G + IQ  K   GA +V A      KL + R LGAD  I+  +E++E + E      
Sbjct: 169 GTIGLLAIQWLKI-LGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRG 227

Query: 215 FDVVFDAVGK 224
            D+V +A G 
Sbjct: 228 ADLVIEAAGS 237

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score =  131 bits (331), Expect = 8e-37
 Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 23  EVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKF 82
           EV      +V I+V A +LN  D   + G +  T  P P  PG++ +GVV  VG  V + 
Sbjct: 1   EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYP-TMPPYPFTPGFEASGVVRAVGPHVTRL 59

Query: 83  KVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG 142
            VGDEV     E         G  A    V E+ +  KP +LSF EA +LP+   T  + 
Sbjct: 60  AVGDEVIAGTGE-------SMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDA 112

Query: 143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID 202
             R+  + G+ IL+    GG G M +QLA+   GA   A  SS  KL+ L+ LG    I+
Sbjct: 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLK-GAEIYATASSDDKLEYLKQLGVPHVIN 171

Query: 203 YTKENIE 209
           Y +E+ E
Sbjct: 172 YVEEDFE 178

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  130 bits (329), Expect = 4e-36
 Identities = 94/249 (37%), Positives = 118/249 (47%), Gaps = 40/249 (16%)

Query: 1   MKAWVYKEYGNSQSVLKFE-TNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP 59
           MKA VY+  G        E   V VP    D+VLIKV A  +   D     G F A    
Sbjct: 1   MKALVYEGPGE------LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA--- 51

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINE-------------------KALDHP 100
            P +PG++ AGVV  VGS+V  FKVGD V  D N                     A+   
Sbjct: 52  PPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGV- 110

Query: 101 KRNGSLAEYTAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLGG 159
            RNG  AEY  V    +   P NLSF EAA   PL+   A  GL+      G S+LV G 
Sbjct: 111 TRNGGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSC--AVHGLDLLGIKPGDSVLVFG- 167

Query: 160 AGGVGTMVIQLAKHVFGASKVA-ATSSTAKLDLLRSLGADLAIDYTKENI----EDLPEK 214
           AG +G ++ QL K   GAS+V  A  +  KL+L + LGA   +D ++E+     ED P  
Sbjct: 168 AGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYG 226

Query: 215 FDVVFDAVG 223
           FDVV +A G
Sbjct: 227 FDVVIEATG 235

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  130 bits (329), Expect = 5e-36
 Identities = 79/256 (30%), Positives = 112/256 (43%), Gaps = 37/256 (14%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP- 59
           M+A +   +G     L +  +V VP+    +VLI+V A  +N  D     G +S      
Sbjct: 1   MRAVLLTGHGGLD-KLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGA 59

Query: 60  -----------------LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPK- 101
                             P I G D+ G V  VG  V   ++G+ V  D + +       
Sbjct: 60  TDSTGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDP 119

Query: 102 ---------RNGSLAEYTAV-EENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAG 151
                    R+G  AEYT V  EN   +    LS VE A+ P +  TA   LER+   AG
Sbjct: 120 ADIDYIGSERDGGFAEYTVVPAENAYPVNS-PLSDVELATFPCSYSTAENMLERAGVGAG 178

Query: 152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL 211
           +++LV G +GGVG+ ++QLAK       V A +  AK + +R+LGAD  I      + D 
Sbjct: 179 ETVLVTGASGGVGSALVQLAKRRGA--IVIAVAGAAKEEAVRALGADTVILRDAPLLADA 236

Query: 212 ----PEKFDVVFDAVG 223
                E  DVV D VG
Sbjct: 237 KALGGEPVDVVADVVG 252

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score =  129 bits (326), Expect = 1e-35
 Identities = 77/232 (33%), Positives = 113/232 (48%), Gaps = 21/232 (9%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+A   K +G    VLK       P+ + + VLIKV AA +N  D  +  G +       
Sbjct: 2   MRAVTLKGFGGVD-VLKIGE-SPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSS 59

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
             I G +VAG VE VGS VK+FK GD V   +           G  AEY    +  +   
Sbjct: 60  E-ILGLEVAGYVEDVGSDVKRFKEGDRVMALL---------PGGGYAEYAVAHKGHVMHI 109

Query: 121 PKNLSFVEAASLPLATETAYEGLER-SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P+  +F EAA++P A  TA++ L++      G+S+L+  GA GVGT   QLA+  +GA+ 
Sbjct: 110 PQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEK-YGAAT 168

Query: 180 VAATSSTAKLDLLRSLGADLAIDY-----TKENIEDL--PEKFDVVFDAVGK 224
           +  TSS  K+D  + L A + I Y         ++ L   +  ++V D VG 
Sbjct: 169 IITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGG 220

Length = 334

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score =  128 bits (324), Expect = 6e-35
 Identities = 76/242 (31%), Positives = 111/242 (45%), Gaps = 40/242 (16%)

Query: 1   MKAWVYKE--YGNSQSVLKFETNVEVPSLREDQVLIKVVAAALN----------PIDFKR 48
           M A+  +   YG+    ++ E  V VP L   +VL+ V+AA +N          P+    
Sbjct: 13  MYAFAIRPERYGDPAQAIQLED-VPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVS--- 68

Query: 49  MLGAFSATDSPLP-TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRN---- 103
              A        P  I G D +G+V  VG  VK +KVGDEV    +    + P+R     
Sbjct: 69  TFAARQRRGRDEPYHIGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDP 128

Query: 104 ---------------GSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA- 147
                          GS A++  V+   L  KPK+LS+ EAA+  L   TAY  L     
Sbjct: 129 MFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNP 188

Query: 148 --FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK 205
                G ++L+ G +GG+G+M IQLA+   GA+ VA  SS  K +  R+LGA+  I+   
Sbjct: 189 NTVKPGDNVLIWGASGGLGSMAIQLARAA-GANPVAVVSSEEKAEYCRALGAEGVINRRD 247

Query: 206 EN 207
            +
Sbjct: 248 FD 249

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  127 bits (321), Expect = 6e-35
 Identities = 81/243 (33%), Positives = 106/243 (43%), Gaps = 26/243 (10%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA +          L+ E  V  P     +VLIKV AA +   D     G F       
Sbjct: 1   MKAAILH---KPNKPLQIE-EVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR--GKY 54

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINE------------------KALDHPKR 102
           P I G+++ G VE+VG  V++FK GD V                        +A    + 
Sbjct: 55  PLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEV 114

Query: 103 NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGG 162
           +G  AEY  V E  L   P N+S   AA       TA   L+R+    G ++LV G  GG
Sbjct: 115 DGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGG 174

Query: 163 VGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE-DLPEKFDVVFDA 221
           VG   IQLAK   GA  +A T S  KL +L+ LGAD  ID +K + +       DVV + 
Sbjct: 175 VGIHAIQLAK-ALGARVIAVTRSPEKLKILKELGADYVIDGSKFSEDVKKLGGADVVIEL 233

Query: 222 VGK 224
           VG 
Sbjct: 234 VGS 236

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score =  128 bits (323), Expect = 8e-35
 Identities = 80/248 (32%), Positives = 114/248 (45%), Gaps = 38/248 (15%)

Query: 1   MKAWVYKE--YGNSQSVLKFETNVEVPSLREDQVLIKVVAAALN----------PIDFKR 48
           M A+  +E   G+ +  ++ E  V VP L   +VL+ V+AA +N          P+    
Sbjct: 8   MYAFAIREERDGDPRQAIQLEV-VPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFA 66

Query: 49  MLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRN----- 103
            L  +   D P   I G D +GVV +VG  V ++KVGDEV     +  L  P        
Sbjct: 67  FLRKYGKLDLPF-HIIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRDGDPM 125

Query: 104 --------------GSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL---ERS 146
                         GS AE+  V++  L  KPK+L++ EAA   L   TAY  L     +
Sbjct: 126 LSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPA 185

Query: 147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKE 206
           A   G ++L+ G AGG+G+   QLA+   G + VA  SS  K +  RSLGA+  ID    
Sbjct: 186 AVKPGDNVLIWGAAGGLGSYATQLAR-AGGGNPVAVVSSPEKAEYCRSLGAEAVIDRNDF 244

Query: 207 NIED-LPE 213
                LP+
Sbjct: 245 GHWGRLPD 252

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  124 bits (314), Expect = 8e-34
 Identities = 74/249 (29%), Positives = 112/249 (44%), Gaps = 31/249 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAF-SATDSP 59
           MKA    EYG     L+ E  V VP     QVL++V  A +   D   + G +       
Sbjct: 1   MKAARLYEYG---KPLRLED-VPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYK 56

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEV--YGDI-----------NEKALDHPKR---- 102
           LP   G++ AG VE+VGS V   K GD V  +               E   ++ +     
Sbjct: 57  LPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIG 116

Query: 103 -NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA--FSAGKSILVLGG 159
            +G  AEY  V    L   P+ L  VEAA L  A  TAY  ++++      G +++V+ G
Sbjct: 117 TDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVI-G 175

Query: 160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPE-----K 214
            GG+G + +Q+ + +  A+ +A   S   L L   LGAD  ++ + + +E++ E      
Sbjct: 176 VGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRG 235

Query: 215 FDVVFDAVG 223
            D V D VG
Sbjct: 236 ADAVIDFVG 244

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  121 bits (306), Expect = 1e-32
 Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 26/230 (11%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V +E+G     +K   +V VP     +VL+K+ A+ +   D    LG +      L
Sbjct: 1   MKAAVVEEFGEKPYEVK---DVPVPEPGPGEVLVKLEASGVCHTDLHAALGDW-PVKPKL 56

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-----YG---------DINEKALDHPK----- 101
           P I G++ AGVV  VG  V   KVGD V     Y            +E    + K     
Sbjct: 57  PLIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYT 116

Query: 102 RNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG 161
            +G+ AEY   +   +   P  LSF +AA L  A  T Y+ L+++    G  +++ G  G
Sbjct: 117 VDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKAGLKPGDWVVISGAGG 176

Query: 162 GVGTMVIQLAKHVFGASKVAATSS-TAKLDLLRSLGADLAIDYTKENIED 210
           G+G + +Q AK +    +V A      KL+L + LGAD  +D+ K +  +
Sbjct: 177 GLGHLGVQYAKAMGL--RVIAIDVGDEKLELAKELGADAFVDFKKSDDVE 224

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score =  119 bits (301), Expect = 2e-32
 Identities = 61/165 (36%), Positives = 81/165 (49%), Gaps = 19/165 (11%)

Query: 34  IKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDIN 93
           I+V AA LN   F+ +L A            G + AGVV +VG  V    VGD V G   
Sbjct: 1   IEVRAAGLN---FRDVLIALGLYPGEAV--LGGECAGVVTRVGPGVTGLAVGDRVMGLAP 55

Query: 94  EKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGK 152
                     G+ A     +  L+   P   SF EAA++P+   TAY  L + +    G+
Sbjct: 56  ----------GAFATRVVTDARLVVPIPDGWSFEEAATVPVVFLTAYYALVDLARLRPGE 105

Query: 153 SILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLG 196
           S+L+   AGGVG   IQLA+H+ GA +V AT  S  K D LR+LG
Sbjct: 106 SVLIHAAAGGVGQAAIQLARHL-GA-EVFATAGSPEKRDFLRALG 148

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  117 bits (295), Expect = 3e-31
 Identities = 78/245 (31%), Positives = 111/245 (45%), Gaps = 31/245 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA +   +     +      V  P   +D+V+IKV  A L   D  ++ G +       
Sbjct: 1   MKAVILPGFKQGYRI----EEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR--MKY 54

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV------------YGDINEKALDHPKR------ 102
           P I G++V G VE+VG  VK FK GD V            Y    E+A    +       
Sbjct: 55  PVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEEL 114

Query: 103 NGSLAEYTAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLGGAG 161
           +G  AEY  V+   L   P N+S  E A + P  T   Y GL R+    G+++LV G  G
Sbjct: 115 DGFFAEYAKVKVTSLVKVPPNVSD-EGAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGG 173

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK--ENIEDLPEKFDVVF 219
           GVG   IQ+AK   GA  +A TSS +K  ++    AD  I  +K  E ++ +    D+V 
Sbjct: 174 GVGIHAIQVAK-ALGAKVIAVTSSESKAKIVSKY-ADYVIVGSKFSEEVKKIGGA-DIVI 230

Query: 220 DAVGK 224
           + VG 
Sbjct: 231 ETVGT 235

Length = 334

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  116 bits (293), Expect = 6e-31
 Identities = 72/211 (34%), Positives = 103/211 (48%), Gaps = 25/211 (11%)

Query: 21  NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK 80
             ++P     +V++KV A+ ++  D +   G +     PLP  PGYD+ G V+ +GS V 
Sbjct: 19  EADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQP-PLPFTPGYDLVGRVDALGSGVT 77

Query: 81  KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY 140
            F+VGD V       AL    R G  AEY  ++   L   P+ +   EA  L L   TAY
Sbjct: 78  GFEVGDRV------AAL---TRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAY 128

Query: 141 EGLERSAFS-AGKSILVLGGAGGVGTMVIQLAK----HVFGASKVAATSSTAKLDLLRSL 195
           + L R+A    G+ +L+ G +GGVG  +++LA      V+G      T+S      LR L
Sbjct: 129 QMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYG------TASERNHAALREL 182

Query: 196 GADLAIDYTKENIED---LPEKFDVVFDAVG 223
           GA   IDY  ++       P   DVVFD VG
Sbjct: 183 GA-TPIDYRTKDWLPAMLTPGGVDVVFDGVG 212

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  115 bits (290), Expect = 2e-30
 Identities = 71/248 (28%), Positives = 101/248 (40%), Gaps = 28/248 (11%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAW +         L     V VP     +VL+KV AA +   D   + G    T + L
Sbjct: 1   MKAWRFH---KGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGG-VPTLTKL 56

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHP------------------KR 102
           P   G+++AG V +VG+ V  FKVGD V                                
Sbjct: 57  PLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGI 116

Query: 103 NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGG 162
           +G  AEY  V    L   P  + F +AA    A  T Y  + R+        +++ G GG
Sbjct: 117 DGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGG 176

Query: 163 VGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID-----YTKENIEDLPEKFDV 217
           +G   +Q+AK   GA+ +A      KL+L + LGAD  ++        +    L   FDV
Sbjct: 177 LGLNAVQIAKA-MGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDV 235

Query: 218 VFDAVGKM 225
           +FD VG  
Sbjct: 236 IFDFVGTQ 243

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  112 bits (283), Expect = 1e-29
 Identities = 67/223 (30%), Positives = 90/223 (40%), Gaps = 24/223 (10%)

Query: 20  TNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV 79
             V VP     +VLIK+ A  +   D     G +    S  P +PG+++ G V +VG+ V
Sbjct: 15  EEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG--SKYPLVPGHEIVGEVVEVGAGV 72

Query: 80  KKFKVGDEV-----YG---------DINEKALDHPK-----RNGSLAEYTAVEENLLALK 120
           +  KVGD V      G            E              G  AEY   +     L 
Sbjct: 73  EGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLL 132

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           P  L   +AA L  A  T Y  L  +    G+ + VL G GG+G + +Q A+   G   V
Sbjct: 133 PDGLPLAQAAPLLCAGITVYSALRDAGPRPGERVAVL-GIGGLGHLAVQYARA-MGFETV 190

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK-FDVVFDAV 222
           A T S  K +L R LGAD  +D   E  E       DV+   V
Sbjct: 191 AITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV 233

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score =  110 bits (278), Expect = 7e-29
 Identities = 76/233 (32%), Positives = 108/233 (46%), Gaps = 23/233 (9%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP- 59
           M+A    E+G    VL  E  V  P     QV I V AA ++ +D +   G       P 
Sbjct: 1   MRAIRLHEFGPP-EVLVPED-VPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPE 58

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLAL 119
           LP +PG +VAGVV+ VG  V    +G  V            +  G  AE    + + L  
Sbjct: 59  LPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAH-------TGRAGGGYAELAVADVDSLHP 111

Query: 120 KPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
            P  L    A ++     TA   L+ +  + G  +LV   AGG+G++++QLAK   GA+ 
Sbjct: 112 VPDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAA-GATV 170

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK---------FDVVFDAVG 223
           V A    AK  L+R+LGAD+A+DYT+    D P++           VV D VG
Sbjct: 171 VGAAGGPAKTALVRALGADVAVDYTR---PDWPDQVREALGGGGVTVVLDGVG 220

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  107 bits (270), Expect = 2e-27
 Identities = 83/259 (32%), Positives = 114/259 (44%), Gaps = 52/259 (20%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V   +G +   L+    V VP     +VL+KV A  +   D K++ G    TD   
Sbjct: 1   MKAAVL--HGPNDVRLE---EVPVPEPGPGEVLVKVRACGICGTDVKKIRGGH--TDLKP 53

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDI-------------------NEKALDHPK 101
           P I G+++AG + +VG  V  FKVGD V+                      N K   +  
Sbjct: 54  PRILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLY 113

Query: 102 RNGSLAEYTAV------EENLLALKPKNLSFVEAA-SLPLATETAYEGLERSAFSAGKSI 154
            +G  AEY  V         +L L P N+SF EAA   PLA         ++    G ++
Sbjct: 114 -DGGFAEYVRVPAWAVKRGGVLKL-PDNVSFEEAALVEPLAC--CINAQRKAGIKPGDTV 169

Query: 155 LVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSLGADLAIDYTKENIEDLPE 213
           LV+G AG +G +   LAK   GA KV  +  +  +L+  + LGAD  ID  +   EDL E
Sbjct: 170 LVIG-AGPIGLLHAMLAKA-SGARKVIVSDLNEFRLEFAKKLGADYTIDAAE---EDLVE 224

Query: 214 K---------FDVVFDAVG 223
           K          DVV  A G
Sbjct: 225 KVRELTDGRGADVVIVATG 243

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  106 bits (266), Expect = 8e-27
 Identities = 80/275 (29%), Positives = 118/275 (42%), Gaps = 60/275 (21%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V K      ++      + VP  +E ++LI+V A  +   D   + G       P 
Sbjct: 1   MKAAVLKGPNPPLTI----EEIPVPRPKEGEILIRVAACGVCHSDLHVLKGE---LPFPP 53

Query: 61  PTIPGYDVAGVVEKVGSQVK---KFKVGDEVYG-----------------DINEKA---- 96
           P + G++++G V +VG  V+      VGD V G                 ++ E      
Sbjct: 54  PFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYN 113

Query: 97  ------LDHPKR-------------NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATE 137
                  D   R              G LAEY  V    LA  P++L + E+A L  A  
Sbjct: 114 RLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGF 173

Query: 138 TAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSL 195
           TAY  L+ +A    G+++ V+ G GGVG+  IQLAK  FGAS + A      KL   + L
Sbjct: 174 TAYGALKHAADVRPGETVAVI-GVGGVGSSAIQLAKA-FGASPIIAVDVRDEKLAKAKEL 231

Query: 196 GADLAIDYTKEN----IEDL--PEKFDVVFDAVGK 224
           GA   ++  KE+    I ++      DVV +A+GK
Sbjct: 232 GATHTVNAAKEDAVAAIREITGGRGVDVVVEALGK 266

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score =  105 bits (264), Expect = 8e-27
 Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 26/230 (11%)

Query: 5   VYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIP 64
           VY ++G    ++    ++ +P     +VL++++AA +NP D   + GA+ +   PLP +P
Sbjct: 2   VYTQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSR-PPLPAVP 60

Query: 65  GYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKR-NGSLAEYTAVEENLLALKPKN 123
           G +  GVV +VGS V    VG  V           P    G+  EY     + L   P +
Sbjct: 61  GNEGVGVVVEVGSGVSGLLVGQRVL----------PLGGEGTWQEYVVAPADDLIPVPDS 110

Query: 124 LSFVEAASL---PLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           +S  +AA L   PL   TA+  L E      G  ++       VG M+IQLAK   G   
Sbjct: 111 ISDEQAAMLYINPL---TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKL-LGFKT 166

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIED------LPEKFDVVFDAVG 223
           +       +++ L++LGAD  ID + E++              +  DAVG
Sbjct: 167 INVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVG 216

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  105 bits (264), Expect = 1e-26
 Identities = 78/259 (30%), Positives = 110/259 (42%), Gaps = 45/259 (17%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGA--FSATDS 58
           MKA  Y  +G     ++ E  V  P ++  +V IKV    +   D    L    F  T+ 
Sbjct: 1   MKAARY--HGRKD--IRVE-EVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEG 55

Query: 59  P-------LPTIPGYDVAGVVEKVGSQVKKFKVGDEV--YGDINEKALDHPKR------- 102
                    P   G++ +GVV +VGS V  FKVGD V     I        KR       
Sbjct: 56  HPHLTGETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCD 115

Query: 103 ----------NGSLAEYTAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAG 151
                      G  AEY  V    +   P N+   EAA + PLA   A+  + RS F  G
Sbjct: 116 SLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAV--AWHAVRRSGFKPG 173

Query: 152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSLGADLAIDYTKEN-IE 209
            + LVL GAG +G + I   K   GASK+  +  S A+ +L   LGA + +D T+ + + 
Sbjct: 174 DTALVL-GAGPIGLLTILALKA-AGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVA 231

Query: 210 DLPEK-----FDVVFDAVG 223
           ++ +       DV FD  G
Sbjct: 232 EVRKLTGGGGVDVSFDCAG 250

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  104 bits (263), Expect = 2e-26
 Identities = 76/253 (30%), Positives = 110/253 (43%), Gaps = 41/253 (16%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+A VY+E+G    +      V  P    D V+++V A  +   D+    G     D  L
Sbjct: 1   MRAAVYEEFGEPLEI----REVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDP--DVTL 54

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVY---------------GDINEKALDHP---KR 102
           P +PG++ AGVV +VG  V +++VGD V                GD N            
Sbjct: 55  PHVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTH 114

Query: 103 NGSLAEYTAVEE---NLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLG 158
            GS AEY AV     NL+ L P ++ FV AA L     TA+  L  ++    G+ + V G
Sbjct: 115 PGSFAEYVAVPRADVNLVRL-PDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHG 173

Query: 159 GAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKF--- 215
             GGVG   + +A    GA  +A      KL+L R LGA   ++ ++   ED+       
Sbjct: 174 -CGGVGLSAVMIAS-ALGARVIAVDIDDDKLELARELGAVATVNASEV--EDVAAAVRDL 229

Query: 216 -----DVVFDAVG 223
                 V  DA+G
Sbjct: 230 TGGGAHVSVDALG 242

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  102 bits (256), Expect = 1e-25
 Identities = 76/252 (30%), Positives = 109/252 (43%), Gaps = 41/252 (16%)

Query: 1   MKAWVYKEYGN-SQSVLKFETNVEVPSLREDQVLIKVVAAA-----LNPIDFKRMLGAFS 54
           MKA V ++ G   ++ L+  T V VP     +VLIKV A       L+ ++     G   
Sbjct: 1   MKAMVLEKPGPIEENPLRL-TEVPVPEPGPGEVLIKVEACGVCRTDLHIVE-----G--D 52

Query: 55  ATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEV--------YGDI------NEKALDHP 100
                LP IPG+++ G VE VG  V +F VGD V         G+        E   D+ 
Sbjct: 53  LPPPKLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNA 112

Query: 101 K-----RNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSIL 155
           +      +G  AEY   +E      P++    EAA L  A    Y  L+ +    G+  L
Sbjct: 113 RFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRALKLAGLKPGQ-RL 171

Query: 156 VLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKF 215
            L G G    + +Q+A++  GA   A T S    +L R LGAD A D      +  PE  
Sbjct: 172 GLYGFGASAHLALQIARY-QGAEVFAFTRSGEHQELARELGADWAGDSD----DLPPEPL 226

Query: 216 D--VVFDAVGKM 225
           D  ++F  VG +
Sbjct: 227 DAAIIFAPVGAL 238

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  101 bits (253), Expect = 2e-25
 Identities = 70/204 (34%), Positives = 99/204 (48%), Gaps = 23/204 (11%)

Query: 23  EVPSLR--EDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK 80
           EVP  +    + L++V A +LN  + K       A + P   +PG+D AGVVE+  +   
Sbjct: 18  EVPDPQPAPHEALVRVAAISLNRGELKF------AAERPDGAVPGWDAAGVVERAAADGS 71

Query: 81  KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY 140
              VG  V G             G+ AE  AV    LA+ P  +SF +AA+LP+A  TA 
Sbjct: 72  GPAVGARVVG---------LGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTAL 122

Query: 141 EGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA-DL 199
             L R     G+ +LV G +GGVG   +QLA    GA  VA   S A+ + LR LGA ++
Sbjct: 123 RALRRGGPLLGRRVLVTGASGGVGRFAVQLAALA-GAHVVAVVGSPARAEGLRELGAAEV 181

Query: 200 AIDYTKENIEDLPEKFDVVFDAVG 223
            +      +   P   D+V D+VG
Sbjct: 182 VVGG--SELSGAP--VDLVVDSVG 201

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 98.5 bits (246), Expect = 1e-24
 Identities = 59/169 (34%), Positives = 73/169 (43%), Gaps = 19/169 (11%)

Query: 59  PLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLA 118
           PLP  PGY   G V +VGS V  FK GD V+              G  AE   V  NLL 
Sbjct: 19  PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFC------------FGPHAERVVVPANLLV 66

Query: 119 LKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS 178
             P  L    AA   LA  TA  G+  +    G+ + V+ G G VG +  QLAK   GA 
Sbjct: 67  PLPDGLPPERAALTALA-ATALNGVRDAEPRLGERVAVV-GLGLVGLLAAQLAKA-AGAR 123

Query: 179 KVAATS-STAKLDLLRSLG-ADLAIDYTKENIEDLPEKFDVVFDAVGKM 225
           +V       A+ +L  +LG AD     T + I       DVV +A G  
Sbjct: 124 EVVGVDPDAARRELAEALGPADPVAADTADEIGGRG--ADVVIEASGSP 170

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 99.2 bits (248), Expect = 2e-24
 Identities = 73/242 (30%), Positives = 106/242 (43%), Gaps = 39/242 (16%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDS-- 58
            KA V +E     S+  F   + +  L E  VLI+V  ++LN  D      A +AT +  
Sbjct: 1   FKALVVEEQDGGVSL--FLRTLPLDDLPEGDVLIRVHYSSLNYKD------ALAATGNGG 52

Query: 59  ---PLPTIPGYDVAGVVEKVGSQVKKFKVGDEVY---GDINEKALDHPKRNGSLAEYTAV 112
                P  PG D AG V    S   +F+ GDEV     D+     +     G  AEY  V
Sbjct: 53  VTRNYPHTPGIDAAGTVVS--SDDPRFREGDEVLVTGYDLGM---NTD---GGFAEYVRV 104

Query: 113 E-ENLLALKPKNLSFVEAASLPLATETA---YEGLERSAFSAGKS-ILVLGGAGGVGTMV 167
             + ++ L P+ LS  EA  L  A  TA      LE +  +     +LV G  GGVG++ 
Sbjct: 105 PADWVVPL-PEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIA 163

Query: 168 IQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK------FDVVFDA 221
           + +     G + VA T    + D L+SLGA   +D  +E++ D  +K      +    D 
Sbjct: 164 VAIL-AKLGYTVVALTGKEEQADYLKSLGASEVLD--REDLLDESKKPLLKARWAGAIDT 220

Query: 222 VG 223
           VG
Sbjct: 221 VG 222

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 99.6 bits (249), Expect = 2e-24
 Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 17/209 (8%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAF---SATD 57
            KA VY E+G  + VL+ E+    P    ++VL+K++AA +NP D  ++ G +     T 
Sbjct: 1   AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTT 60

Query: 58  SPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLL 117
              P + G +  G V KVGS VK  K GD V        +      G+   +  V  + L
Sbjct: 61  PEPPAVGGNEGVGEVVKVGSGVKSLKPGDWV--------IPLRPGLGTWRTHAVVPADDL 112

Query: 118 ALKPKNLSFVEAASLPLATETAYEGLERS-AFSAGKSILVLGGAGGVGTMVIQLAKHVFG 176
              P ++   +AA+L +   TAY  LE       G  ++  G    VG  VIQLAK   G
Sbjct: 113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKL-LG 171

Query: 177 ASKVAA---TSSTAKL-DLLRSLGADLAI 201
              +          +L + L++LGAD  +
Sbjct: 172 IKTINVVRDRPDLEELKERLKALGADHVL 200

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 96.9 bits (242), Expect = 9e-24
 Identities = 72/228 (31%), Positives = 101/228 (44%), Gaps = 16/228 (7%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPID-FKRMLGAFSATDSP 59
           MKA V ++ G    VLK    + +P  +   VLI+V A  LN  + F R   + S     
Sbjct: 1   MKAIVIEQPGGP-EVLKLR-EIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVK--- 55

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLAL 119
            P + G +  G VE+       F  G  V   +          +GS AEYT V    +  
Sbjct: 56  FPRVLGIEAVGEVEEAPGG--TFTPGQRVATAMGGMG---RTFDGSYAEYTLVPNEQVYA 110

Query: 120 KPKNLSFVEAASLPLATETAYEGLERS-AFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS 178
              +LS+ E A+LP    TA+  L RS     G ++L+ GG   VG   ++LAK   GA+
Sbjct: 111 IDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKA-LGAT 169

Query: 179 KVAATSSTAKLDLLRSLGADLAI---DYTKENIEDLPEKFDVVFDAVG 223
             A T S  +  LL+ LGAD  +       E +   P  FD V + VG
Sbjct: 170 VTATTRSPERAALLKELGADEVVIDDGAIAEQLRAAPGGFDKVLELVG 217

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 97.3 bits (243), Expect = 1e-23
 Identities = 68/258 (26%), Positives = 102/258 (39%), Gaps = 41/258 (15%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAAL---------NPIDF---KR 48
           MKA    E G     L+ E  ++ P     +VL+KV A  +            D    K 
Sbjct: 1   MKAAAVVEPG---KPLE-EVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKT 56

Query: 49  MLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDE--VY-------------GDIN 93
           M          LP + G+++ G V  VG      KVGD+  VY             GD N
Sbjct: 57  MS--LDDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDEN 114

Query: 94  EKALDHP---KRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSA 150
             A        ++G  AEY  V  +   + P  L    AA+L  +  TAY  +++     
Sbjct: 115 LCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLV 174

Query: 151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID-----YTK 205
               +V+ GAGG+G M + L K +  A+ +      AKL+  ++ GAD+ ++       K
Sbjct: 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAK 234

Query: 206 ENIEDLPEKFDVVFDAVG 223
             I+      D V D V 
Sbjct: 235 RIIKAAGGGVDAVIDFVN 252

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 97.0 bits (242), Expect = 1e-23
 Identities = 71/240 (29%), Positives = 104/240 (43%), Gaps = 31/240 (12%)

Query: 10  GNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVA 69
           G+    L+      VP     +VL++V A+ L   D         A       IPG++ A
Sbjct: 8   GDRTVELR---EFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQ-GVIPGHEPA 63

Query: 70  GVVEKVGSQVKKFKVGDEV------------YGD-------INEKALDHPKRNGSLAEYT 110
           GVV  VG  V  F+VGD V                       +++A     R+G  AEY 
Sbjct: 64  GVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYM 123

Query: 111 AVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQL 170
            V E  L   P +LSF + A L     TAY  L R   S   ++LV+ GAG VG   + L
Sbjct: 124 LVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVGVSGRDTVLVV-GAGPVGLGALML 182

Query: 171 AKHVFGASKVAATS-STAKLDLLRSLGADLAIDYTKENIEDLPE-----KFDVVFDAVGK 224
           A+   GA  V     S  +L+L ++LGAD  I+  +++++++ E       DV  +  G 
Sbjct: 183 AR-ALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGN 241

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 65/209 (31%), Positives = 91/209 (43%), Gaps = 20/209 (9%)

Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK 81
           V VP     +VL+K     +N  D     G +     P P   G++  G V  VG  V  
Sbjct: 23  VPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKP-PFDCGFEGVGEVVAVGEGVTD 81

Query: 82  FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE 141
           FKVGD V       A       G+ AEY  V        P      E   L ++  TA  
Sbjct: 82  FKVGDAV-------ATMS---FGAFAEYQVVPARHA--VPVPELKPEVLPLLVSGLTASI 129

Query: 142 GLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA 200
            LE      +G+++LV   AGG G   +QLAK   G   +   SS  K + L+SLG D  
Sbjct: 130 ALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKL-AGCHVIGTCSSDEKAEFLKSLGCDRP 188

Query: 201 IDYTKENIEDL-----PEKFDVVFDAVGK 224
           I+Y  E++ ++     P+  DVV+++VG 
Sbjct: 189 INYKTEDLGEVLKKEYPKGVDVVYESVGG 217

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 95.8 bits (239), Expect = 2e-23
 Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 36/231 (15%)

Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP--LPTIPGYDVAGVVEKVGSQV 79
           V  P     +VLIKV AA +   D       +     P   P + G++ +G + +VG  V
Sbjct: 19  VPEPEPGPGEVLIKVAAAGICGSDLH----IYKGDYDPVETPVVLGHEFSGTIVEVGPDV 74

Query: 80  KKFKVGDEVY----------------GDIN---EKALDHPKRNGSLAEYTAVEENLLALK 120
           + +KVGD V                 GD N    +     + +G  AEY  V E  L   
Sbjct: 75  EGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHEL 134

Query: 121 PKNLSFVEAA-SLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P+NLS   AA + PLA    +   ERS    G +++V  G G +G +  Q+AK       
Sbjct: 135 PENLSLEAAALTEPLAV-AVHAVAERSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVV 192

Query: 180 VAATSSTA-KLDLLRSLGADLAIDYTKENIEDLP------EKFDVVFDAVG 223
           V  T     +LD+ + LGAD A++  +E++ +L       +  DVV +  G
Sbjct: 193 VVGTEKDEVRLDVAKELGAD-AVNGGEEDLAELVNEITDGDGADVVIECSG 242

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 94.9 bits (237), Expect = 8e-23
 Identities = 67/240 (27%), Positives = 99/240 (41%), Gaps = 37/240 (15%)

Query: 2   KAWVYKEY--GNSQ-SVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDS 58
           +  V  +   G       +    V +P L++ +VL++ +  +++P     M G  S   S
Sbjct: 3   RQVVLAKRPEGPPPPDDFELVE-VPLPELKDGEVLVRTLYLSVDPY----MRGWMSDAKS 57

Query: 59  PLP------TIPGYDVAGVVEKVGSQVKKFKVGDEVYG--DINEKALDHPKRNGSLAEYT 110
             P       + G  V  VVE   S+   FKVGD V G     E A+             
Sbjct: 58  YSPPVQLGEPMRGGGVGEVVE---SRSPDFKVGDLVSGFLGWQEYAVVDGAS-----GLR 109

Query: 111 AVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQ 169
            ++ +L       L  +    L     TAY GL        G++++V   AG VG++V Q
Sbjct: 110 KLDPSLGLPLSAYLGVLGMTGL-----TAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQ 164

Query: 170 LAKHVFGASKVAATSSTAKLDLLRS-LGADLAIDYTKENI-EDL----PEKFDVVFDAVG 223
           +AK + GA  V    S  K   L   LG D AI+Y   ++ E L    P+  DV FD VG
Sbjct: 165 IAKLL-GARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVG 223

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 94.6 bits (236), Expect = 1e-22
 Identities = 70/234 (29%), Positives = 103/234 (44%), Gaps = 40/234 (17%)

Query: 19  ETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDS--PLPTIPGYDVAGVVEKVG 76
             ++  P     +VL++V    +   D    L  +   +     P I G++++G V +VG
Sbjct: 14  VVDIPEPVPGAGEVLVRVKRVGICGSD----LHIYHGRNPFASYPRILGHELSGEVVEVG 69

Query: 77  SQVKKFKVGDEVYGDI-------------------NEKALD-HPKRNGSLAEYTAVEENL 116
             V   KVGD V  D                    N + L  H  R+G  AEY  V  + 
Sbjct: 70  EGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVH--RDGGFAEYIVVPADA 127

Query: 117 LALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF 175
           L L P+ LS  +AA + PLA       + R+  +AG ++LV+G AG +G  VIQ+AK   
Sbjct: 128 L-LVPEGLSLDQAALVEPLAI--GAHAVRRAGVTAGDTVLVVG-AGPIGLGVIQVAKAR- 182

Query: 176 GASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLP------EKFDVVFDAVG 223
           GA  +       +L+  R LGAD  I+   E++          E  DVV DA G
Sbjct: 183 GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG 236

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 94.1 bits (235), Expect = 1e-22
 Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 46/235 (19%)

Query: 20  TNVEVPSLREDQVLIKVVAAALNPIDFK-RMLGAFSATDSPLPTIPGYDVAGVVEKVGSQ 78
           T+V VP    + VLIKV   A+   D        ++    P+P + G++  G V +VGS+
Sbjct: 16  TDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSE 75

Query: 79  VKKFKVGDEVYG-------------------DINEKAL--DHPKRNGSLAEYTAV-EENL 116
           V  FKVGD V G                     N K +  +   R G+ AEY  +   N+
Sbjct: 76  VTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVN---RPGAFAEYLVIPAFNV 132

Query: 117 LALKPKNLSFVEAASL-PL--ATETAYEGLERSAFS-AGKSILVLGGAGGVGTMVIQLAK 172
             + P ++    AA   P   A  TA       +F   G+ +L+ G AG +G M   +AK
Sbjct: 133 WKI-PDDIPDDLAAIFDPFGNAVHTAL------SFDLVGEDVLITG-AGPIGIMAAAVAK 184

Query: 173 HVFGASKVAATS-STAKLDLLRSLGADLAIDYTKENIED------LPEKFDVVFD 220
           HV GA  V  T  +  +L+L R +GA  A++  KE++ D      + E FDV  +
Sbjct: 185 HV-GARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLE 238

Length = 341

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 92.3 bits (230), Expect = 6e-22
 Identities = 68/232 (29%), Positives = 91/232 (39%), Gaps = 37/232 (15%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            KA    E G    +       +VP     +VLIKV A  +   D     GA        
Sbjct: 1   YKAVQVTEPGGPLEL----VERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGL--SY 54

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV------------------------YGDINEKA 96
           P +PG++V G ++ VG  V ++KVGD V                         G +    
Sbjct: 55  PRVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVT 114

Query: 97  LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILV 156
            D     G  AEY       LA  P +L   EAA L  A  T +  L  S    G  + V
Sbjct: 115 RD-----GGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNSGAKPGDLVAV 169

Query: 157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENI 208
             G GG+G + +Q A    G   VA +  + K DL R LGA   ID +KE++
Sbjct: 170 Q-GIGGLGHLAVQYAAK-MGFRTVAISRGSDKADLARKLGAHHYIDTSKEDV 219

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 91.3 bits (227), Expect = 2e-21
 Identities = 68/256 (26%), Positives = 90/256 (35%), Gaps = 43/256 (16%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
             A VY   G+ +           P      VLI+V A  +   D     G         
Sbjct: 2   KAAVVYVGGGDVR-----LEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPG- 55

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVY-----------------------GDINEKAL 97
             I G++  G V +VG  V+ FKVGD V                              A 
Sbjct: 56  DIILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAG 114

Query: 98  DHPKRNGSLAEYTAV-EENLLALKPKNLSFVEAA-SLPLATETAYEGLERSAFSAGKSIL 155
                +G  AEY  V  +  LA  P  +    AA + PLAT  AY G    A       +
Sbjct: 115 LGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLAT--AYHGHAERAAVRPGGTV 172

Query: 156 VLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLGADLAIDYTKENIEDL--- 211
           V+ GAG +G + I LAK   GAS V     S  +L+L +  G    +    E+       
Sbjct: 173 VVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEIL 231

Query: 212 ----PEKFDVVFDAVG 223
                   DVV +AVG
Sbjct: 232 ELTGGRGADVVIEAVG 247

Length = 350

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 89.9 bits (224), Expect = 6e-21
 Identities = 71/271 (26%), Positives = 108/271 (39%), Gaps = 57/271 (21%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+A V  E G    +      VE+      +VL+++ AA L   D   + G   A   PL
Sbjct: 1   MRAAVLHEVGKPLEI----EEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA---PL 53

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-------------------------YGDINEK 95
           P + G++ AGVVE+VG  V   K GD V                          G +  +
Sbjct: 54  PAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQ 113

Query: 96  ALDHPKR-------------NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG 142
             D  +R              G+ AEYT V E  +     ++    AA L     T   G
Sbjct: 114 LPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGV-G 172

Query: 143 --LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK-VAATSSTAKLDLLRSLGADL 199
             +  +    G ++ V+ G GGVG   IQ A+   GAS+ +A      KL+L R  GA  
Sbjct: 173 AVVNTARVRPGDTVAVI-GCGGVGLNAIQGARIA-GASRIIAVDPVPEKLELARRFGATH 230

Query: 200 AIDYTKENIEDL------PEKFDVVFDAVGK 224
            ++ ++++  +           D  F+AVG+
Sbjct: 231 TVNASEDDAVEAVRDLTDGRGADYAFEAVGR 261

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 88.3 bits (220), Expect = 2e-20
 Identities = 66/246 (26%), Positives = 100/246 (40%), Gaps = 48/246 (19%)

Query: 16  LKFETNVEVPSLREDQVLIKVVAAALNPID---FKRM-LGAFSATDSPLPTIPGYDVAGV 71
           L+ E    +P     +VL++V A  +   D   +K   +G F   +   P + G++ AG 
Sbjct: 10  LRLE-ERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKE---PMVLGHESAGT 65

Query: 72  VEKVGSQVKKFKVGDEV---------------YGDINEKALD-------HPKRNGSLAEY 109
           V  VGS V   KVGD V                G  N   L         P  +G+L  Y
Sbjct: 66  VVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYN---LCPDMRFAATPPVDGTLCRY 122

Query: 110 TAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVI 168
                +     P N+S  E A + PL+         R+    G ++LV  GAG +G +  
Sbjct: 123 VNHPADFCHKLPDNVSLEEGALVEPLS--VGVHACRRAGVRPGDTVLVF-GAGPIGLLTA 179

Query: 169 QLAKHVFGASKVAAT-SSTAKLDLLRSLGADLAIDYTKENIEDLPEK---------FDVV 218
            +AK  FGA+KV  T    ++L+  + LGA   ++   E+  +  EK          DVV
Sbjct: 180 AVAK-AFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVV 238

Query: 219 FDAVGK 224
            +  G 
Sbjct: 239 IECTGA 244

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 87.7 bits (218), Expect = 3e-20
 Identities = 67/219 (30%), Positives = 87/219 (39%), Gaps = 37/219 (16%)

Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYD-----VAGVVEKV- 75
           V+VP   E QVL++ +  +L+P     M G  S   S     P  +     V G V KV 
Sbjct: 32  VDVPEPGEGQVLLRTLYLSLDPY----MRGRMSDAPS---YAPPVELGEVMVGGTVAKVV 84

Query: 76  GSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLA---LKPKNLSFVEAASL 132
            S    F+ GD V G                 EY   +   L      P  LS      L
Sbjct: 85  ASNHPGFQPGDIVVG------------VSGWQEYAISDGEGLRKLDPSPAPLSA-YLGVL 131

Query: 133 PLATETAYEGLER-SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL 191
            +   TAY GL       AG++++V   AG VG++V Q+AK   G   V       K D 
Sbjct: 132 GMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLK-GCRVVGIAGGAEKCDF 190

Query: 192 LRS-LGADLAIDYTKEN-----IEDLPEKFDVVFDAVGK 224
           L   LG D  IDY  E+      E  P+  DV F+ VG 
Sbjct: 191 LTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGG 229

Length = 340

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 83.4 bits (207), Expect = 9e-19
 Identities = 75/249 (30%), Positives = 109/249 (43%), Gaps = 54/249 (21%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDF----------KRML 50
           MKA V K      + L     V VP     +VLIKV+AA++   D            R+ 
Sbjct: 1   MKAIV-KTKAGPGAELV---EVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIK 56

Query: 51  GAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDI-------------NEKAL 97
                   P P I G++ AG V +VG  V + KVGD V  +              N    
Sbjct: 57  --------P-PLIFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVC 107

Query: 98  DHPK-----RNGSLAEYTAVEENLLALKPKNLSFVEAASL--PL--ATETAYEGLERSAF 148
            + K      +G  AEY  V E  L    K++   E AS+  PL  A  T   G      
Sbjct: 108 QNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPP-EIASIQEPLGNAVHTVLAGD----- 161

Query: 149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSLGADLAIDYTKEN 207
            +GKS+L+ G  G +G M I +AK   GAS V A+  +  +L+L + +GAD+ I+  +E+
Sbjct: 162 VSGKSVLITG-CGPIGLMAIAVAK-AAGASLVIASDPNPYRLELAKKMGADVVINPREED 219

Query: 208 IEDLPEKFD 216
           + ++    D
Sbjct: 220 VVEVKSVTD 228

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 59/215 (27%), Positives = 86/215 (40%), Gaps = 26/215 (12%)

Query: 20  TNVEVPSLREDQVLIKVVAAAL---NPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVG 76
                P+    QVL++V    +   +   F +    F       P  PG++  G V  +G
Sbjct: 10  EEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVY--PAEPGGPGHEGWGRVVALG 67

Query: 77  SQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLAT 136
             V+   VGD V G ++          G+ AEY   + +     P  L        PL  
Sbjct: 68  PGVRGLAVGDRVAG-LSG---------GAFAEYDLADADHAVPLPSLLDGQAFPGEPLG- 116

Query: 137 ETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSL 195
             A     R    AGK++ V+ GAG +G + +QLA    GA +V A     A+L L R L
Sbjct: 117 -CALNVFRRGWIRAGKTVAVI-GAGFIGLLFLQLAA-AAGARRVIAIDRRPARLALAREL 173

Query: 196 GADLAIDYTKENIEDLPEK------FDVVFDAVGK 224
           GA   +    E I +   +       DVV +AVG 
Sbjct: 174 GATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH 208

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 28/236 (11%)

Query: 1   MKAWVYKEYGNSQSVLKFETN-VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP 59
           MKA + +EYG    V +      EVP     +VLIKV AA +NP D   + G + +T   
Sbjct: 1   MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGST-KA 59

Query: 60  LPTIPGYDVAGVVEKVG-SQVKKFKVGDEV--YGDINEKALDHPKRNGSLAEYTAVEENL 116
           LP  PG++ +G V   G   + +  +G  V                 G+ AEY   +   
Sbjct: 60  LPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAGS----------YGTYAEYAVADAQQ 109

Query: 117 LALKPKNLSFVEAASL---PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKH 173
               P  +SF + AS    PL   TA   LE +     K+++    A  +G M+++L K 
Sbjct: 110 CLPLPDGVSFEQGASSFVNPL---TALGMLETAREEGAKAVVHTAAASALGRMLVRLCKA 166

Query: 174 VFGASKVAATSSTAKLDLLRSLGADLAIDYTKENI-EDLPE-----KFDVVFDAVG 223
             G   +       ++DLL+ +GA+  ++ +  +  EDL E        + FDAVG
Sbjct: 167 D-GIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG 221

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 74/238 (31%), Positives = 108/238 (45%), Gaps = 39/238 (16%)

Query: 4   WVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL--- 60
            V KE  + +   + ET +++  L E  VLIKV  ++LN   +K  L   + T       
Sbjct: 4   VVEKE--DGKVSAQVET-LDLSDLPEGDVLIKVAYSSLN---YKDAL---AITGKGGVVR 54

Query: 61  --PTIPGYDVAGVVEKVGSQVKKFKVGDEVY---GDINEKALDHPKRNGSLAEYTAVEEN 115
             P IPG D AG V  V S+  +F+ GDEV      +      H    G  ++Y  V  +
Sbjct: 55  SYPMIPGIDAAGTV--VSSEDPRFREGDEVIVTGYGLGV---SHD---GGYSQYARVPAD 106

Query: 116 LLALKPKNLSFVEAASLPLATETA---YEGLERSAFSAG-KSILVLGGAGGVGTMVIQ-L 170
            L   P+ LS  EA +L  A  TA      LER+  +     +LV G  GGVG++ +  L
Sbjct: 107 WLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAIL 166

Query: 171 AKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED-----LPEKFDVVFDAVG 223
           +K   G   VA+T    + D L+ LGA   ID  +E++         E++    D VG
Sbjct: 167 SK--LGYEVVASTGKAEEEDYLKELGASEVID--REDLSPPGKPLEKERWAGAVDTVG 220

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 79.5 bits (197), Expect = 3e-17
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 32/238 (13%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            KA V ++     S  +    ++   L E  V ++V  + LN   +K  L         +
Sbjct: 1   FKALVLEKDDGGTSA-ELRE-LDESDLPEGDVTVEVHYSTLN---YKDGLAI--TGKGGI 53

Query: 61  ----PTIPGYDVAGVVEKVGSQVKKFKVGDEV----YGDINEKALDHPKRNGSLAEYTAV 112
               P +PG D+AG V  V S   +FK GD V    +G + E+        G  A+   V
Sbjct: 54  VRTFPLVPGIDLAGTV--VESSSPRFKPGDRVVLTGWG-VGER------HWGGYAQRARV 104

Query: 113 EENLLALKPKNLSFVEAASLPLATETAY---EGLERSAFSAGKS-ILVLGGAGGVGTMVI 168
           + + L   P+ LS  +A ++  A  TA      LE    + G   +LV G AGGVG++ +
Sbjct: 105 KADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAV 164

Query: 169 QLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLP---EKFDVVFDAVG 223
            L   + G   VA+T    + D LRSLGA   ID  + +    P   E++    D VG
Sbjct: 165 ALLARL-GYEVVASTGRPEEADYLRSLGASEIIDRAELSEPGRPLQKERWAGAVDTVG 221

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 78.7 bits (194), Expect = 5e-17
 Identities = 66/234 (28%), Positives = 102/234 (43%), Gaps = 38/234 (16%)

Query: 20  TNVEVPSLREDQVLIKVVAAALNPIDFK-RMLGAFSATDSPLPTIPGYDVAGVVEKVGSQ 78
           T V VP     +VLIKV+A ++   D        ++ +    P + G++VAG V  +G  
Sbjct: 14  TEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPG 73

Query: 79  VKKFKVGDEVYGDIN---------EKALDHPKRN---------GSLAEYTAVEENLLALK 120
           V+  KVGD V  + +          +   H  +N         G  AEY  V    +   
Sbjct: 74  VEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKN 133

Query: 121 PKNLSFVEAASL--PL--ATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFG 176
           PK++   E A++  PL  A  T   G       +GKS+LV  GAG +G M I +AK   G
Sbjct: 134 PKSIP-PEYATIQEPLGNAVHTVLAGP-----ISGKSVLVT-GAGPIGLMAIAVAKAS-G 185

Query: 177 ASKVAATS-STAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVG 223
           A  V  +  +  +L+L + +GA   ++  KE++          E  DV  +  G
Sbjct: 186 AYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSG 239

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 77.9 bits (193), Expect = 8e-17
 Identities = 66/231 (28%), Positives = 95/231 (41%), Gaps = 33/231 (14%)

Query: 20  TNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV 79
              E   L  D V IK+    +   D   +   +  T  PL  +PG+++ G+V  VGS+V
Sbjct: 15  FTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPL--VPGHEIVGIVVAVGSKV 72

Query: 80  KKFKVGDEV--------------------------YGDINEKALDHPKRNGSLAEYTAVE 113
            KFKVGD V                              N K  D     G  A++  V+
Sbjct: 73  TKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVD 132

Query: 114 ENLLALK-PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAK 172
           E     K P+ L    AA L  A  T Y  L+R+    GK + V+G  GG+G + ++ AK
Sbjct: 133 ERF-VFKIPEGLDSAAAAPLLCAGITVYSPLKRNGVGPGKRVGVVG-IGGLGHLAVKFAK 190

Query: 173 HVFGASKVAATSSTAKLDLLRSLGADLAIDYT-KENIEDLPEKFDVVFDAV 222
              GA   A + S +K +    LGAD  I     E ++      D++ D V
Sbjct: 191 A-LGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTV 240

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 77.9 bits (192), Expect = 8e-17
 Identities = 73/211 (34%), Positives = 98/211 (46%), Gaps = 28/211 (13%)

Query: 25  PSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIP---GYDVAGVVEKVGSQVKK 81
           P+  E QV  K  A  +N ID     G +     P P++P   G + AGVV KVGS VK 
Sbjct: 26  PAENEVQVENK--AIGINYIDTYIRSGLY-----PPPSLPSGLGTEAAGVVSKVGSGVKH 78

Query: 82  FKVGDEV-YGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY 140
            KVGD V Y    + AL      G+ +    V  +  A+ P  +SF +AA+  L   T Y
Sbjct: 79  IKVGDRVVYA---QSAL------GAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVY 129

Query: 141 EGLERS-AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL 199
             L ++      +  L    AGGVG +  Q AK   GA  +    S  K    +  GA  
Sbjct: 130 YLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAK-ALGAKLIGTVGSAQKAQRAKKAGAWQ 188

Query: 200 AIDYTKENI-EDLPE-----KFDVVFDAVGK 224
            I+Y +ENI E + E     K  VV+D+VGK
Sbjct: 189 VINYREENIVERVKEITGGKKVRVVYDSVGK 219

Length = 327

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 65/244 (26%), Positives = 97/244 (39%), Gaps = 42/244 (17%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V    G    +     ++  P     + L++V+ A +   D +   G       P 
Sbjct: 1   MKALVL--DGG---LDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKG-----YYPF 50

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDIN-------------------EKALDHPK 101
           P +PG++  G+VE+         VG  V G+IN                      L    
Sbjct: 51  PGVPGHEFVGIVEEGPEAE---LVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVD 107

Query: 102 RNGSLAEY-TAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLGG 159
           R+G+ AEY T   ENL  + P  +   +A    PLA   A E LE+   + G  + VL G
Sbjct: 108 RDGAFAEYLTLPLENLHVV-PDLVPDEQAVFAEPLA--AALEILEQVPITPGDKVAVL-G 163

Query: 160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVF 219
            G +G ++ Q+     G   V     + KL L R LG +  +    E+       FDVV 
Sbjct: 164 DGKLGLLIAQVLAL-TGPDVVLVGRHSEKLALARRLGVETVLPDEAES---EGGGFDVVV 219

Query: 220 DAVG 223
           +A G
Sbjct: 220 EATG 223

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 71.9 bits (177), Expect = 3e-16
 Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 21/110 (19%)

Query: 29  EDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEV 88
             +VL++V AA +   D     G        LP I G++ AG+VE+VG  V   KVGD V
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPV--KLPLILGHEGAGIVEEVGPGVTGLKVGDRV 58

Query: 89  YGDI-------------NEKALDHPK-----RNGSLAEYTAV-EENLLAL 119
                             E    + K      +G  AEY  V   NL+ L
Sbjct: 59  VVYPLIPCGKCAACREGRENLCPNGKFLGVHLDGGFAEYVVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 69/268 (25%), Positives = 104/268 (38%), Gaps = 49/268 (18%)

Query: 1   MKAWVYKEYGNSQSVLKFE-TNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLGAFSATDS 58
           MKA VY   G      K     V  P ++     +++V A ++   D     G      +
Sbjct: 1   MKALVYLGPG------KIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGG--VPGA 52

Query: 59  PLPTIPGYDVAGVVEKVGSQVKKFKVGDEV-----------------YGDINEKALDHPK 101
               I G++  G V +VGS VK+ K GD V                 Y    E  L   K
Sbjct: 53  KHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWK 112

Query: 102 R----NGSLAEYTAVEE---NLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSI 154
                +G  AEY  V     NL  + P  L   +A  L     T + G E +    G ++
Sbjct: 113 LGNRIDGGQAEYVRVPYADMNLAKI-PDGLPDEDALMLSDILPTGFHGAELAGIKPGSTV 171

Query: 155 LVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLDLLRSLGADLAIDYTKENIEDLPE 213
            V+G AG VG   +  A+   GA+++ A  S   +LDL +  GA   I+    +I +   
Sbjct: 172 AVIG-AGPVGLCAVAGARL-LGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQIL 229

Query: 214 K------FDVVFDAVG-----KMCISIV 230
           +       D V +AVG     +  + +V
Sbjct: 230 ELTGGRGVDCVIEAVGFEETFEQAVKVV 257

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 76/254 (29%), Positives = 105/254 (41%), Gaps = 60/254 (23%)

Query: 2   KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP-- 59
           K W Y E       L+ E  V VP+L+ D++LI+V A  +   D          TD    
Sbjct: 32  KVWRYPE-------LRVED-VPVPNLKPDEILIRVKACGICGSDIH-----LYETDKDGY 78

Query: 60  --------LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGD-------------------- 91
                    P + G++ +GVVEK G  VK F+ GD V  +                    
Sbjct: 79  ILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCK 138

Query: 92  -INEKALDHPKRNGSLAEYTAVEE-------NLLALKPKNLSFVEAASLPLATETAYEGL 143
            + E        +G+ AEY AV          L  +  ++ +F EA +L   T  AY GL
Sbjct: 139 NLKELGFSA---DGAFAEYIAVNARYAWEINELREIYSEDKAF-EAGALVEPTSVAYNGL 194

Query: 144 -ERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSLGADLA 200
             R   F  G  ++V G AG +G   I LAK   GASKV A   S  + +L + +GAD  
Sbjct: 195 FIRGGGFRPGAYVVVYG-AGPIGLAAIALAKAA-GASKVIAFEISEERRNLAKEMGADYV 252

Query: 201 IDYTKENIEDLPEK 214
            + TK       EK
Sbjct: 253 FNPTKMRDCLSGEK 266

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 62/236 (26%), Positives = 87/236 (36%), Gaps = 49/236 (20%)

Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK 81
           +EV   +  +V IKVVA  +   D   + G      +PLP I G++ AG+VE +G  V  
Sbjct: 18  IEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP---TPLPVILGHEGAGIVESIGPGVTT 74

Query: 82  FKVGDEV-----------------------YGDI----------------NEKALDHPKR 102
            K GD+V                                             K + H   
Sbjct: 75  LKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLG 134

Query: 103 NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAG 161
             + AEYT V E  LA    +    +   +     T Y     +A  + G +  V  G G
Sbjct: 135 TSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVF-GLG 193

Query: 162 GVGTMVIQLAKHVFGASKV-AATSSTAKLDLLRSLGADLAI---DYTKENIEDLPE 213
           GVG  VI   K   GAS++ A   +  K +  + LGA   I   D  K  +E L E
Sbjct: 194 GVGLSVIMGCK-AAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTE 248

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 66/241 (27%), Positives = 99/241 (41%), Gaps = 42/241 (17%)

Query: 16  LKFETNVEVPSLREDQVLIKVVAAALNPIDFKRML-GAFSATDSPLPTIPGYDVAGVVEK 74
           L+ E     P     +V ++V A  +   D      G F       P + G++V+GVVE 
Sbjct: 9   LRVEE-RPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEA 67

Query: 75  VGSQVKKFKVGDEV---------------------------YGDINEKALDHPKRNGSLA 107
           VG  V     G  V                            G     A+  P   G   
Sbjct: 68  VGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLG----SAMRFPHVQGGFR 123

Query: 108 EYTAVEENLLALKPKNLSFVEAA-SLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTM 166
           EY  V+ +     P  LS   AA + PLA   A   + R+   AGK +LV G AG +G +
Sbjct: 124 EYLVVDASQCVPLPDGLSLRRAALAEPLAV--ALHAVNRAGDLAGKRVLVTG-AGPIGAL 180

Query: 167 VIQLAKHVFGASKVAATS-STAKLDLLRSLGADLAIDYTKENI---EDLPEKFDVVFDAV 222
           V+  A+   GA+++ AT  + A L + R++GAD  ++  ++ +         FDVVF+A 
Sbjct: 181 VVAAARRA-GAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEAS 239

Query: 223 G 223
           G
Sbjct: 240 G 240

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 25/225 (11%)

Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK 81
            E+P L++ +VL + +  +++P      +  +S   +   T+ G  VA V+E   S+  K
Sbjct: 26  EELPPLKDGEVLCEALFLSVDPY-----MRPYSKRLNEGDTMIGTQVAKVIE---SKNSK 77

Query: 82  FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLS---FVEAASLPLATET 138
           F VG  V    +     H   +G           L A  P +L     +    +P  T  
Sbjct: 78  FPVGTIVVA--SFGWRTHTVSDGKDQ---PDLYKLPADLPDDLPPSLALGVLGMPGLT-- 130

Query: 139 AYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA 197
           AY GL E     AG++++V G AG VG++V Q+AK + G   +    S  K+  L+ LG 
Sbjct: 131 AYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAK-IKGCKVIGCAGSDDKVAWLKELGF 189

Query: 198 DLAIDYTKENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKF 237
           D   +Y   ++E+      P+  D  FD VG    S V    + F
Sbjct: 190 DAVFNYKTVSLEEALKEAAPDGIDCYFDNVGGEFSSTVLSHMNDF 234

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 72.7 bits (179), Expect = 7e-15
 Identities = 70/267 (26%), Positives = 108/267 (40%), Gaps = 48/267 (17%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQ-VLIKVVAAALNPIDFKRMLGAFSATDSP 59
           MKA V+K  G     ++ E  V +P +++    ++KV AAA+   D     G      S 
Sbjct: 1   MKAVVFKGPG----DVRVEE-VPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP---ST 52

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYG-DINE-------KALDH------------ 99
              + G++  G V +VG +V+  KVGD V              +                
Sbjct: 53  PGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYA 112

Query: 100 --PKRNGSLAEYTAV---EENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSI 154
             P  +G+ AEY  V   +  LL L P  LS   A  L     T Y G +R+    G ++
Sbjct: 113 GSPNLDGAQAEYVRVPFADGTLLKL-PDGLSDEAALLLGDILPTGYFGAKRAQVRPGDTV 171

Query: 155 LVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLDLLRSLGA---DLAIDYTKENIED 210
            V+G  G VG   +  A+   GA++V A      +L+   +LGA   +       E + +
Sbjct: 172 AVIG-CGPVGLCAVLSAQV-LGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVRE 229

Query: 211 LPEK--FDVVFDAVG-----KMCISIV 230
             E    DVV +AVG      +   +V
Sbjct: 230 ATEGRGADVVLEAVGGAAALDLAFDLV 256

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 70.0 bits (172), Expect = 5e-14
 Identities = 58/180 (32%), Positives = 81/180 (45%), Gaps = 19/180 (10%)

Query: 27  LREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL----PTIPGYDVAGVVEKVGSQVKKF 82
           L E  VLI+V  +++N  D     G  S     +    P IPG D+AG V  V S   +F
Sbjct: 25  LPEGDVLIRVAYSSVNYKD-----GLASIPGGKIVKRYPFIPGIDLAGTV--VESNDPRF 77

Query: 83  KVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETA--- 139
           K GDEV     +  + H   +G  +EY  V    +   PK L+  EA  L  A  TA   
Sbjct: 78  KPGDEVIVTSYDLGVSH---HGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALS 134

Query: 140 YEGLERSAFS-AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD 198
              LE +  +     +LV G  GGVG++ + +   + G   VA+T      D L+ LGA 
Sbjct: 135 IHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKL-GYEVVASTGKADAADYLKKLGAK 193

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 61/253 (24%), Positives = 90/253 (35%), Gaps = 54/253 (21%)

Query: 21  NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDS-PLPTIPGYDVAGVVEKVGSQV 79
            V++   R  +VL+++ A  +   D        S  D    P + G++ AG+VE VG  V
Sbjct: 19  EVDLDPPRAGEVLVRITATGVCHTD----AHTLSGDDPEGFPAVLGHEGAGIVEAVGEGV 74

Query: 80  KKFKVGDEV--------------------YGD-------------------INEKALDHP 100
              K GD V                      +                    N   + H 
Sbjct: 75  TSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHY 134

Query: 101 KRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGG 159
               + AEYT V E  L     +    +A  L     T    +  +A    G ++ V  G
Sbjct: 135 LGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVF-G 193

Query: 160 AGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSLGA-----DLAIDYTKENIEDL-P 212
            GGVG   IQ AK   GA ++ A   +  KL+L +  GA        +D   E I +L  
Sbjct: 194 LGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTD 252

Query: 213 EKFDVVFDAVGKM 225
              D  F+ VG +
Sbjct: 253 GGADYAFECVGNV 265

Length = 366

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 65/247 (26%), Positives = 92/247 (37%), Gaps = 51/247 (20%)

Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV-- 79
           V +P L    VL++V  A +   D   + G       PLP I G++  G V  +G  V  
Sbjct: 18  VPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRV--PLPIILGHEGVGRVVALGGGVTT 75

Query: 80  ----KKFKVGDEV---------------------------YGDINEKALDHPKRNGSLAE 108
               +  KVGD V                           YG   E + D P  +G  AE
Sbjct: 76  DVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGH--EASCDDPHLSGGYAE 133

Query: 109 YTAVEENLLALK-PKNLSFVEAASLPLATETAYEGLER-SAFSAGKSILVLGGAGGVGTM 166
           +  +      ++ P N+    AA    A  T    L+R     AG +++V G AG +G  
Sbjct: 134 HIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQG-AGPLGLY 192

Query: 167 VIQLAKHVFGASKVAATS-STAKLDLLRSLGADLAIDYTKENIEDLPEK---------FD 216
            +  AK   GA +V     S  +L+L R  GAD  ID  +                   D
Sbjct: 193 AVAAAKL-AGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGAD 251

Query: 217 VVFDAVG 223
           VV +A G
Sbjct: 252 VVIEASG 258

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 62/235 (26%), Positives = 95/235 (40%), Gaps = 35/235 (14%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA+     G    +        +P    +  +++  A A    D   + G   A     
Sbjct: 1   MKAFAMLGIGKVGWI-----EKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGG--APGERH 53

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVY-GDIN-----EKALD-HPK------------ 101
             I G++  GVVE+VGS+VK FK GD V    I        A   +P             
Sbjct: 54  GMILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFS 113

Query: 102 --RNGSLAEYTAVEE---NLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILV 156
             ++G  AEY  V +   NL A  P  L+  +A  LP    T + G E +    G ++ V
Sbjct: 114 NFKDGVFAEYFHVNDADANL-APLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVAV 172

Query: 157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAK-LDLLRSLGADLAIDYTKENIED 210
            G  G VG M +  A+   GA ++ A  S    ++L +  GA   +DY   ++ +
Sbjct: 173 FG-IGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVE 225

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 22/170 (12%)

Query: 63  IPGYDVAGVVEKVGSQVKKFKVGDEV-------------YGDINEKALDHPKRN------ 103
           I G++  G+V++VG  V   KVGD V             Y     + L    +N      
Sbjct: 56  ILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVD 115

Query: 104 GSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGV 163
           G +AE   V  +     P+ L   +A+S+  A  T Y+ ++ S    G+ I + G AGG+
Sbjct: 116 GGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVSGIKPGQWIAIYG-AGGL 174

Query: 164 GTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPE 213
           G + +Q AK+VF A  +A   +  KL L + +GADL I+  +   ED+ +
Sbjct: 175 GNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRV--EDVAK 222

Length = 338

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTA-KLDLLRSLGADLAIDYTKENIEDLPEK------ 214
           GVG   +QLAK   GA++V A   +  KL+L + LGAD  I+Y  E+  +   +      
Sbjct: 1   GVGLAAVQLAKA-LGAARVIAVDRSEEKLELAKELGADHVINYRDEDFVERVRELTGGRG 59

Query: 215 FDVVFDAVG 223
            DVV D VG
Sbjct: 60  VDVVIDCVG 68

Length = 131

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 69/258 (26%), Positives = 98/258 (37%), Gaps = 49/258 (18%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVA---------AALNPIDFKRMLG 51
           M+A V++        L     V  P     QVL+KV+A         A  +P       G
Sbjct: 1   MRAAVFR-----DGPLVVRD-VPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAG 54

Query: 52  AFSATDSPLPTIPGYDVAGVVEKVGSQV-KKFKVGDEV------------YGDINEKALD 98
             S  D     + G++  G V   G    +K KVG  V               I      
Sbjct: 55  GPSLMDLGADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGI----GL 110

Query: 99  HPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL--PLATETAYEGLERSAFSAGKSILV 156
            P+  G  AEY  + E LL   P  LS +E A+L  PLA       + R+  + G+  LV
Sbjct: 111 SPEAPGGYAEYMLLSEALLLRVPDGLS-MEDAALTEPLA--VGLHAVRRARLTPGEVALV 167

Query: 157 LGGAGGVGTMVIQLAKHVFGASK-VAATSSTAKLDLLRSLGADLAID------YTKENIE 209
           + G G +G  VI   K   G    VA+  S  +  L  ++GAD+ +D      +     E
Sbjct: 168 I-GCGPIGLAVIAALK-ARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAE 225

Query: 210 D---LPEKFDVVFDAVGK 224
                  K  V+F+ VG 
Sbjct: 226 LARAGGPKPAVIFECVGA 243

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 64.0 bits (156), Expect = 7e-12
 Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 42/232 (18%)

Query: 26  SLRE---DQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKF 82
           +LR+   + V+IKV+   +   D  ++      ++ P+  +PG++V G V +VGS V KF
Sbjct: 28  TLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPM--VPGHEVVGEVVEVGSDVSKF 85

Query: 83  KVGDEV-----------------------------YGDINEKALDHPKRNGSLAEYTAVE 113
            VGD V                             Y D+     D     G  A    V+
Sbjct: 86  TVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYT---DGKPTQGGFASAMVVD 142

Query: 114 ENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLG--GAGGVGTMVIQLA 171
           +  +   P+ ++  +AA L  A  T Y  L  S F   +S L  G  G GGVG M +++A
Sbjct: 143 QKFVVKIPEGMAPEQAAPLLCAGVTVYSPL--SHFGLKQSGLRGGILGLGGVGHMGVKIA 200

Query: 172 KHVFGASKVAATSSTAKLDLLRSLGAD-LAIDYTKENIEDLPEKFDVVFDAV 222
           K +     V ++S   + + L  LGAD   +      +++  +  D + D V
Sbjct: 201 KAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252

Length = 357

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 63.6 bits (155), Expect = 9e-12
 Identities = 66/236 (27%), Positives = 99/236 (41%), Gaps = 44/236 (18%)

Query: 24  VPSLREDQVLIKVVAAALNPID---FKRM-LGAFSATDSPLPTIPGYDVAGVVEKVGSQV 79
           +P L    V +++ A  +   D    K M    F   +   P + G++ AG++E+VGS+V
Sbjct: 36  LPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKE---PMVIGHECAGIIEEVGSEV 92

Query: 80  KKFKVGDEVY---------------GDIN----EKALDHPKRNGSLAEYTAVEENLLALK 120
           K   VGD V                G  N     K    P  +GSLA       +L    
Sbjct: 93  KHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKL 152

Query: 121 PKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P+N+S  E A   PL+         R+      ++LV+ GAG +G +V  LA   FGA +
Sbjct: 153 PENVSLEEGAMCEPLS--VGVHACRRANIGPETNVLVM-GAGPIG-LVTMLAARAFGAPR 208

Query: 180 VAATSSTA-KLDLLRSLGADLAIDYTKENIEDLPEK-----------FDVVFDAVG 223
           +        +L + + LGAD  +  +  NIED+  +            DV FD VG
Sbjct: 209 IVIVDVDDERLSVAKQLGADEIVLVST-NIEDVESEVEEIQKAMGGGIDVSFDCVG 263

Length = 364

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 72/263 (27%), Positives = 105/263 (39%), Gaps = 51/263 (19%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQ-VLIKVVAAALNPIDFKRMLGAFSATDSP 59
           MKA VY   GN  +V     +V  P +      ++++   A+   D     G   A    
Sbjct: 1   MKAVVYGGPGNV-AV----EDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGA---E 52

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVY--------GDINEKALD-------HPKRNG 104
              + G++  G VE+VGS V+  KVGD V            N K          +P R G
Sbjct: 53  PGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAG 112

Query: 105 SL-------------AEYTAV---EENLLALKPKNLSFVEAASLPLATE--TAYEGLERS 146
                          AEY  V   + NLL L  ++ +  +   L L+    T + GLE +
Sbjct: 113 GAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGLELA 172

Query: 147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV-AATSSTAKLDLLRSLGADLAIDYTK 205
               G ++ V  GAG VG M    A  + GAS+V        +LDL  S+GA + ID++ 
Sbjct: 173 GVQPGDTVAVF-GAGPVGLMAAYSAI-LRGASRVYVVDHVPERLDLAESIGA-IPIDFSD 229

Query: 206 EN-----IEDLPEKFDVVFDAVG 223
            +     +   P   D   D VG
Sbjct: 230 GDPVEQILGLEPGGVDRAVDCVG 252

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 73/275 (26%), Positives = 103/275 (37%), Gaps = 59/275 (21%)

Query: 1   MKAWVYKE------YGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFS 54
           M+A V +E      Y +S+  L  E  VE+      +VL+K+ AA L   D   + G   
Sbjct: 1   MRAAVLRETGAPTPYADSRP-LVIEE-VELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP 58

Query: 55  ATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEV------------YGDINEKALDHP-- 100
               PLP   G++ AGVV +VG  V   +VGD V                   AL  P  
Sbjct: 59  ---RPLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGA 115

Query: 101 ----------------KRNGSL---------AEYTAVEENLLALKPKNLSFVEAASLPLA 135
                            R G +         AEY  V    +    K++    AA    A
Sbjct: 116 AANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCA 175

Query: 136 TETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLR 193
             T    +  +A    G+S+ V+ G GGVG   + L     GAS+V A   +  KL L R
Sbjct: 176 VLTGVGAVVNTAGVRPGQSVAVV-GLGGVGLSAL-LGAVAAGASQVVAVDLNEDKLALAR 233

Query: 194 SLGADLAIDYTKENIEDLPEKF-----DVVFDAVG 223
            LGA   ++    N  +   +      D  F+  G
Sbjct: 234 ELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG 268

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 65/271 (23%), Positives = 109/271 (40%), Gaps = 56/271 (20%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLRE--DQVLIKVVAAALNPIDFKRMLGAFSATDS 58
           MKA VY   G     + +E     P+++E  D  ++K++   +   D   + G       
Sbjct: 1   MKALVYHGPG----KISWED-RPKPTIQEPTD-AIVKMLKTTICGTDLHILKG------- 47

Query: 59  PLPTIP-----GYDVAGVVEKVGSQVKKFKVGDEV------------------YGDINEK 95
            +PT+      G++  GVVE+VGS V  FKVGD V                  Y      
Sbjct: 48  DVPTVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESG 107

Query: 96  A--LDHPKRNGSLAEYTAV--EENLLALKPKNLSFVEAASLPLATETAYE-GLERSAFSA 150
              L +   +G+ AEY  +   +N L   P+ +    A  L     T YE G+       
Sbjct: 108 GWILGN-LIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKP 166

Query: 151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED 210
           G ++ ++G AG VG   +  A+    +  +       +L++ + LGA   ++  K +  +
Sbjct: 167 GDTVAIVG-AGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIE 225

Query: 211 L------PEKFDVVFDAVG-----KMCISIV 230
                      DVV +AVG     ++C  +V
Sbjct: 226 QVLELTDGRGVDVVIEAVGIPATFELCQELV 256

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 28/165 (16%)

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-YGDI-------------------------NE 94
           P +PG+++ G+V K+G  VKKFK GD V  G I                         N 
Sbjct: 67  PIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNS 126

Query: 95  KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSI 154
              D  K  G  ++   V+++ +   P NL     A L  A  T Y  ++    +     
Sbjct: 127 IGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKH 186

Query: 155 LVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGAD 198
           L + G GG+G + +++ K  FG    V ++SS  + + +  LGAD
Sbjct: 187 LGVAGLGGLGHVAVKIGK-AFGLKVTVISSSSNKEDEAINRLGAD 230

Length = 360

>gnl|CDD|176255 cd08295, double_bond_reductase_like, Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 74/252 (29%), Positives = 107/252 (42%), Gaps = 50/252 (19%)

Query: 2   KAWVYKEY---GNSQSVLKFETN---VEVPSLREDQVLIKVVAAALNPIDFKRM----LG 51
           K  + K Y      +S L+  T    ++VP      VL+K +  + +P    RM      
Sbjct: 4   KQVILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDS 63

Query: 52  AFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTA 111
            +     P   I GY VA VV+   S    FKVGD V+G                  +T 
Sbjct: 64  LYLPPFKPGEVITGYGVAKVVD---SGNPDFKVGDLVWG------------------FTG 102

Query: 112 VEENLLALKPKNLSFVEAASLPLATE---------TAYEGL-ERSAFSAGKSILVLGGAG 161
            EE  L  + ++L  ++   +PL+           TAY G  E      G+++ V   +G
Sbjct: 103 WEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASG 162

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADLAIDYTKENIED------LPEK 214
            VG +V QLAK + G   V +  S  K+DLL++ LG D A +Y +E   D       P  
Sbjct: 163 AVGQLVGQLAK-LKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNG 221

Query: 215 FDVVFDAVG-KM 225
            D+ FD VG KM
Sbjct: 222 IDIYFDNVGGKM 233

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in inflamatory cells, and in other cells by bifunctional LTB4 12-HD/PGR. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 338

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 57.8 bits (140), Expect = 8e-10
 Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 55/251 (21%)

Query: 17  KFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFS----ATDSPL---PTIPGYDVA 69
           + E  V VP     ++L+KV A  +   D K   GA S        P    P IPG++  
Sbjct: 13  RLEE-VPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFV 71

Query: 70  GVVEKVGSQVKK--FKVGDEV---------------------------YGDINEKALDHP 100
           G V ++G   ++   KVGD V                           YG  N       
Sbjct: 72  GRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNV----- 126

Query: 101 KRNGSLAEYTAVEENLLALK-PKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLG 158
             NG +AEY    +  +  K P ++   +A  + PLA   A   ++R+       ++VL 
Sbjct: 127 --NGGMAEYMRFPKEAIVHKVPDDIPPEDAILIEPLAC--ALHAVDRANIKFD-DVVVLA 181

Query: 159 GAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN----IEDLPEK 214
           GAG +G  +I  A+       +       +L L R  GAD+ ++  + +    I++L   
Sbjct: 182 GAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGG 241

Query: 215 F--DVVFDAVG 223
           +  D+  +A G
Sbjct: 242 YGCDIYIEATG 252

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 41/214 (19%)

Query: 15  VLKFETNVEV-----PSLR-EDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDV 68
           V   +  V V     P ++ +D VL+KV ++ L   D  R+   F       P   G++ 
Sbjct: 5   VNDTDGIVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRI---FKNGAHYYPITLGHEF 61

Query: 69  AGVVEKVGSQVKKFKVGDEV------------------YGDINEKALDHPKRNGSLAEYT 110
           +G VE VGS V     GD V                  Y    +      +R+G  AEY 
Sbjct: 62  SGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYI 121

Query: 111 AVEE-NLLALKP----KNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGT 165
            V+  NL AL      ++ +F+E  ++ L      +G E      GK+++++G AG +G 
Sbjct: 122 VVKRKNLFALPTDMPIEDGAFIEPITVGLHAFHLAQGCE------GKNVIIIG-AGTIGL 174

Query: 166 MVIQLAKHVFGASKVAATS-STAKLDLLRSLGAD 198
           + IQ A    GA  V A   ++ KL L +SLGA 
Sbjct: 175 LAIQCAV-ALGAKSVTAIDINSEKLALAKSLGAM 207

Length = 347

>gnl|CDD|176253 cd08293, PTGR2, Prostaglandin reductase

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 23/212 (10%)

Query: 25  PSLREDQVLIKVVAAALNPIDFKRMLGAFSATD--SPLPTIPGYDVAGVVEKVGSQVKKF 82
             L E QVL++ +  +++P    RM    + TD  +P       D  GV     S+ +KF
Sbjct: 32  DELNEGQVLVRTLYLSVDPYMRCRM-NEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKF 90

Query: 83  KVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLS-FVEAASLPLATETAYE 141
            VGD V       + + P +  ++ + +++E+    L   +LS F+ A  LP    TA  
Sbjct: 91  AVGDIV------TSFNWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGL--TALI 142

Query: 142 GLERSAF---SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRS-LG 196
           G++        A ++++V G AG  G++  Q+   + G S+V     S  K  LL+S LG
Sbjct: 143 GIQEKGHITPGANQTMVVSGAAGACGSLAGQIG-RLLGCSRVVGICGSDEKCQLLKSELG 201

Query: 197 ADLAIDYTKENI-----EDLPEKFDVVFDAVG 223
            D AI+Y  +N+     E  PE  DV FD VG
Sbjct: 202 FDAAINYKTDNVAERLRELCPEGVDVYFDNVG 233

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 345

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 11/172 (6%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+A V+ ++G+   VL+    V  P+    +VL++   + ++  D   + G +      L
Sbjct: 1   MRAAVHTQFGDPADVLE-IGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTY-GYKPEL 58

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P I G +  GVV+ VG  VK  +VG  V           P   G+ AEY     + L   
Sbjct: 59  PAIGGSEAVGVVDAVGEGVKGLQVGQRVAV--------APVH-GTWAEYFVAPADGLVPL 109

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAK 172
           P  +S   AA L     +A   L+      G+ ++     G VG +V  LA 
Sbjct: 110 PDGISDEVAAQLIAMPLSALMLLDFLGVKPGQWLIQNAAGGAVGKLVAMLAA 161

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 21 NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK 80
          +VE+   R D+VL+++VA  +   D   ++       +PLP + G++ AGVVE VGS V 
Sbjct: 19 DVELDDPRPDEVLVRIVATGICHTD---LVVRDGGLPTPLPAVLGHEGAGVVEAVGSAVT 75

Query: 81 KFKVGDEV 88
            K GD V
Sbjct: 76 GLKPGDHV 83

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 56/218 (25%), Positives = 79/218 (36%), Gaps = 48/218 (22%)

Query: 2   KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLP 61
           KA V  E G    +   E  V  P   E  V IK++A ++   D   + G  +   +  P
Sbjct: 4   KAAVAWEAGKPLVIE--EIEVAPPKANE--VRIKMLATSVCHTDILAIEGFKA---TLFP 56

Query: 62  TIPGYDVAGVVEKVGSQVKKFKVGDEVY-----------------------GDINEKAL- 97
            I G++ AG+VE VG  V   K GD+V                           NE  L 
Sbjct: 57  VILGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLM 116

Query: 98  -DHPKR-------------NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL 143
            D   R               + ++YT V+EN +A             L     T Y   
Sbjct: 117 PDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAA 176

Query: 144 ERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
             +A    G ++ V  G G VG   I  AK + GAS++
Sbjct: 177 WNTAKVEPGSTVAVF-GLGAVGLSAIMGAK-IAGASRI 212

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 64/256 (25%), Positives = 94/256 (36%), Gaps = 61/256 (23%)

Query: 21  NVEVPSLREDQ-VLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV 79
            V  P + +    +++V A A+   D     G           I G++  GVVE+VG +V
Sbjct: 16  EVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKG--DILGHEFMGVVEEVGPEV 73

Query: 80  KKFKVGDEV------------------YG---DINEKALDHPKR---------------- 102
           +  KVGD V                  Y    + N  A                      
Sbjct: 74  RNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGG 133

Query: 103 -NGSLAEYTAV---EENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLG 158
             G  AEY  V   +     + P +LS  +A  L     T Y   E +    G ++ V  
Sbjct: 134 YAGGQAEYVRVPFADVGPFKI-PDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVW- 191

Query: 159 GAGGVGTMVIQLAKHVFGASKVAATSSTA-KLDLLRS-LGADLAIDYTKENIEDLPEKF- 215
           G G VG    + AK   GA +V A      +L++ RS LGA+  I++ +   +D+ E   
Sbjct: 192 GCGPVGLFAARSAKL-LGAERVIAIDRVPERLEMARSHLGAET-INFEEV--DDVVEALR 247

Query: 216 --------DVVFDAVG 223
                   DV  DAVG
Sbjct: 248 ELTGGRGPDVCIDAVG 263

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score = 51.9 bits (124), Expect = 8e-08
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 8/107 (7%)

Query: 138 TAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLG 196
           TAY GL E      G++++V   AG VG++V Q+AK + G   V A  S  K+  L+ LG
Sbjct: 125 TAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAK-LKGCKVVGAAGSDEKVAYLKKLG 183

Query: 197 ADLAIDY-TKENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKF 237
            D+A +Y T +++E+      P+ +D  FD VG    + V  +  KF
Sbjct: 184 FDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKF 230

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 18/173 (10%)

Query: 61  PTIPGYDVAG--VVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLA 118
           P +PG  + G  V + V S    FK GD + G    +     + + +      +++++  
Sbjct: 73  PFVPGQRIEGFGVSKVVDSDDPNFKPGDLISGITGWEEYSLIRSSDNQLRKIQLQDDI-- 130

Query: 119 LKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA 177
                LS+     L +A  TAY G  E  +   G S+ V   +G VG +V QLAK + G 
Sbjct: 131 ----PLSY-HLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAK-LHGC 184

Query: 178 SKVAATSSTAKLDLLRS-LGADLAIDYTKENIED------LPEKFDVVFDAVG 223
             V +  S+ K+DLL++ LG D A +Y +E   D       PE  D+ FD VG
Sbjct: 185 YVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG 237

Length = 348

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 49.3 bits (117), Expect = 7e-07
 Identities = 45/194 (23%), Positives = 77/194 (39%), Gaps = 30/194 (15%)

Query: 58  SPLPTIPGYDVAGVVEKVGSQVKKFKVGD--------------------------EVYGD 91
           S  P IPG+++ G+  KVG  V KFK GD                          +V   
Sbjct: 58  SRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFT 117

Query: 92  INEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFS-- 149
            N ++ D  +  G  ++   V+   +   P  L     A L  A  T Y  ++    +  
Sbjct: 118 YNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKE 177

Query: 150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD-LAIDYTKENI 208
           +GK + V  G GG+G + +++ K       V + SS  + + +  LGAD   +    + +
Sbjct: 178 SGKRLGV-NGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKM 236

Query: 209 EDLPEKFDVVFDAV 222
           ++     D + D V
Sbjct: 237 KEAVGTMDFIIDTV 250

Length = 375

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 22 VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK 81
          +EV   +  +V IK+VA  +   D   + G      +P P I G++ AG+VE VG  V  
Sbjct: 25 IEVAPPKAHEVRIKIVATGICRSDDHVVSGKL---VTPFPVILGHEAAGIVESVGEGVTT 81

Query: 82 FKVGDEV 88
           K GD+V
Sbjct: 82 VKPGDKV 88

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 38/226 (16%)

Query: 19  ETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAF---SATDSPLPTIPGYDVAGVVEKV 75
           +T VE+P L    V++KV    +   D    L  +     T+  LP   G++++G V + 
Sbjct: 13  KTRVEIPELGAGDVVVKVAGCGVCHTD----LSYYYMGVRTNHALPLALGHEISGRVIQA 68

Query: 76  GSQVKKFKVGDEV-----------------YGDI-NEKALDHPKRNGSLAEYTAVEENLL 117
           G+    + +G  V                  G I   + +      G  A +  V    L
Sbjct: 69  GAGAASW-IGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGL 127

Query: 118 ALKPKNLSFVEAASLPL--------ATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQ 169
                + + + AA LPL        A  T Y+   ++    G  ++V+G AGGVG  ++Q
Sbjct: 128 C--VVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQAGLKKGDLVIVIG-AGGVGGYMVQ 184

Query: 170 LAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKF 215
            AK   GA+ VA      KL++++  GADL ++   ++  ++ +  
Sbjct: 185 TAK-AMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLI 229

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 53/244 (21%), Positives = 90/244 (36%), Gaps = 54/244 (22%)

Query: 21  NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYD-------VAGVVE 73
           ++  P     +VL++ +   +   D  R + A     +P    PG D         GVVE
Sbjct: 17  DIPEPEPTPGEVLVRTLEVGVCGTD--REIVAGEYGTAP----PGEDFLVLGHEALGVVE 70

Query: 74  KVGSQVKKFKVGDEVY-------GDINEKALDHP--------------KRNGSLAEYTAV 112
           +VG        GD V        G      +  P                +G + EY   
Sbjct: 71  EVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVD 129

Query: 113 EENLLALKPKNLSFVEAASL--PL-----ATETAYEGLERSAFSAGKSILVLGGAGGVG- 164
           +   L   P +L+  +   L  PL     A E A    +R      +  LVLG AG +G 
Sbjct: 130 DPEYLVKVPPSLA--DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLG-AGPIGL 186

Query: 165 --TMVI-QLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED--LPEKFDVVF 219
              +++      V+  ++       A  D++  LGA   ++ +K  + +  L  +FD++ 
Sbjct: 187 LAALLLRLRGFEVYVLNRRDPPDPKA--DIVEELGATY-VNSSKTPVAEVKLVGEFDLII 243

Query: 220 DAVG 223
           +A G
Sbjct: 244 EATG 247

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 54/253 (21%)

Query: 19  ETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQ 78
           E +VE+P  ++ +VL+++VA  +   D   + GA    +   P I G++ AG+VE VG  
Sbjct: 18  EVDVEMP--QKGEVLVRIVATGVCHTDAFTLSGA--DPEGVFPVILGHEGAGIVEAVGEG 73

Query: 79  VKKFKVGDEVYG---------------------------------------DINEKALDH 99
           V   KVGD V                                           + + + H
Sbjct: 74  VTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYH 133

Query: 100 PKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLG 158
                + +EYT V E  LA         E   L     T    +  +A    G ++ V  
Sbjct: 134 YMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVF- 192

Query: 159 GAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSLGADLAI---DYTK---ENIEDL 211
           G GG+G  VIQ A+    AS++ A   + AK +L + LGA   +   DY K   E I ++
Sbjct: 193 GLGGIGLSVIQGARMA-KASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEI 251

Query: 212 PE-KFDVVFDAVG 223
            +   D  F+ +G
Sbjct: 252 TDGGVDYSFECIG 264

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 2  KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP-- 59
          KA V    G    V      +E+   +  +VL+K+VA+ L   D   + G     D P  
Sbjct: 3  KAAVLWGPGQPWEV----EEIELDDPKAGEVLVKLVASGLCHSDEHLVTG-----DLPMP 53

Query: 60 -LPTIPGYDVAGVVEKVGSQVKKFKVGDEV 88
            P + G++ AGVV KVG  V   K GD V
Sbjct: 54 RYPILGGHEGAGVVTKVGPGVTGVKPGDHV 83

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 45/242 (18%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MK   ++ YG  +  L+ E   E+P + +D++L++V++ +L    +K    A   +D   
Sbjct: 1   MKTKAWRMYG--KGDLRLEKF-ELPEIADDEILVRVISDSLCFSTWKL---ALQGSDHKK 54

Query: 61  --------PTIPGYDVAGVVEKVGSQVK-KFKVGDE--VYGDINEK-ALDHP----KRNG 104
                   P I G++ AG + KVG + + K+K G    +   +        P       G
Sbjct: 55  VPNDLAKEPVILGHEFAGTILKVGKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPG 114

Query: 105 SLAEYT-----AVEENLLALKPKNLSFVEAASL-PLA------------TETAYEGLERS 146
            LA Y       +E++ L L  +   + EA+ + PL+                Y    R 
Sbjct: 115 GLATYHIIPNEVMEQDCL-LIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYR--HRM 171

Query: 147 AFSAGKSILVLGGAGGVGTMVIQLAKHV-FGASKVAATS-STAKLDLLRSLGADLAIDYT 204
               G +  +LGGAG +G M I  A H   G S +  T  +  +L   + L    A    
Sbjct: 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRG 231

Query: 205 KE 206
            E
Sbjct: 232 IE 233

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 65/247 (26%), Positives = 93/247 (37%), Gaps = 48/247 (19%)

Query: 20  TNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV 79
             + VP     +V++ + A  +   D     G  +      P + G++ AGVVE VG  V
Sbjct: 17  ETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN---DEFPFLLGHEAAGVVEAVGEGV 73

Query: 80  KKFKVGDEVYGDINEKAL---------DHPK-----RNGS----LAEYTAVEENL--LAL 119
                GD V   +N +A+           P       N +    L + T +   L   A 
Sbjct: 74  TDVAPGDYVV--LNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAF 131

Query: 120 KPKNLSFV-EAASLPLATETAYEGLERSAFSAG-------------KSILVLGGAGGVGT 165
             K L    +   +  A + A  GL      AG              S+ V+ G GGVG 
Sbjct: 132 AEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVI-GCGGVGD 190

Query: 166 MVIQLAKHVFGASKVAATS-STAKLDLLRSLGADLAIDYTK----ENIEDLPEKF--DVV 218
             I  A  + GASK+ A      KL+  R  GA   ++ +     E I  L   F  DVV
Sbjct: 191 AAIAGAA-LAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVV 249

Query: 219 FDAVGKM 225
            DAVG+ 
Sbjct: 250 IDAVGRP 256

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 32/190 (16%)

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV---------------YGDINE--------KAL 97
           P + G++V G +    S     K G  V                 + N+         A+
Sbjct: 60  PMVLGHEVIGKIVHSDS--SGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAM 117

Query: 98  DHPKRNGSLAEYTAVEENLLALKPKNLSF-VEAASLPLATETAYEGLERSAFSAGKSILV 156
             P  +G    Y  V+       P+     V A + PLA   A     ++    GK + V
Sbjct: 118 YFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMAFAEPLAV--AIHAAHQAGDLQGKRVFV 175

Query: 157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK-- 214
            G  G +G +++   K +  A  V A  S   L L R +GAD  ++   ++++    +  
Sbjct: 176 SG-VGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKG 234

Query: 215 -FDVVFDAVG 223
            FDV F+  G
Sbjct: 235 YFDVSFEVSG 244

Length = 343

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 65/255 (25%), Positives = 92/255 (36%), Gaps = 60/255 (23%)

Query: 21  NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP--LPTIPGYDVAGVVEKVGSQ 78
            VEV   +  +V IK++A  +   D   + GA    D     P I G++ AG+VE VG  
Sbjct: 19  EVEVAPPKAGEVRIKILATGVCHTDAYTLSGA----DPEGLFPVILGHEGAGIVESVGEG 74

Query: 79  VKKFKVGDEV---YGDINE----KALDHPKRN---------------------------- 103
           V   K GD V   Y    E    K     K N                            
Sbjct: 75  VTSVKPGDHVIPLY--TPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPI 132

Query: 104 ------GSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILV 156
                  + +EYT V E  +A         +   L     T Y  +  +A    G ++ V
Sbjct: 133 YHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAV 192

Query: 157 LGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSLGADLAI---DYTKENIEDLP 212
             G G VG  VIQ AK   GAS++     +  K +L +  GA   +   D+ K   + L 
Sbjct: 193 F-GLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLV 250

Query: 213 EK----FDVVFDAVG 223
           E      D  F+ +G
Sbjct: 251 EMTDGGVDYTFECIG 265

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|222256 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 195 LGADLAIDYTKENIEDL--PEKFDVVFDAVG 223
           LGAD  IDYT E+ E+    E  DVV D VG
Sbjct: 1   LGADEVIDYTTEDFEEATAGEGVDVVLDTVG 31

Length = 129

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 63/245 (25%), Positives = 87/245 (35%), Gaps = 31/245 (12%)

Query: 3   AWVYKEYGNSQS-VLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLP 61
           AW  +  G  +   L+F     VP     ++L++V A  +   D     G        + 
Sbjct: 1   AWEVERPGPIEDGPLRFVER-PVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRV- 58

Query: 62  TIPGYDVAGVVEKVGSQVKKFKVGDEV-------------YGDINEKALDHPKR------ 102
             PG++V G V   G+    F VGD V             Y     + L    R      
Sbjct: 59  -TPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDT 117

Query: 103 NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGG 162
           +G  AEYT V        P     VE A L  A    Y  L R++   G   L L G GG
Sbjct: 118 DGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLRASLPPG-GRLGLYGFGG 176

Query: 163 VGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFD--VVFD 220
              +  Q+A    GA+    T   A   L  +LGA  A        +  PE  D  ++F 
Sbjct: 177 SAHLTAQVAL-AQGATVHVMTRGAAARRLALALGAASAGGAY----DTPPEPLDAAILFA 231

Query: 221 AVGKM 225
             G +
Sbjct: 232 PAGGL 236

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 37/192 (19%)

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGD-INEKALDHP-----------------KR 102
           P + G++  GV++ VG  V   ++G+ V  D +      +P                  R
Sbjct: 54  PRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHR 113

Query: 103 NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKS------ILV 156
           +G  +EY  V        P   +     ++        E    +A   G++      + +
Sbjct: 114 DGGFSEYAVV--------PAKNAHRIPDAIADQYAVMVEPFTIAANVTGRTGPTEQDVAL 165

Query: 157 LGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLDLLRSLGADLAIDYTKENIEDLPEKF 215
           + GAG VG  ++Q+ K V+    V        +L L +  GAD  I+  +E + +  E+ 
Sbjct: 166 IYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEK 225

Query: 216 DV----VFDAVG 223
            +    + DA  
Sbjct: 226 GIKPTLIIDAAC 237

Length = 339

>gnl|CDD|130269 TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 28/175 (16%)

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-------YGDINEKALDHPKRNGSLAEYTAVE 113
           P +PGY+  G V + G     F+ GD V       Y D+        KR  + A      
Sbjct: 59  PLVPGYESVGRVVEAGPDT-GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRL 117

Query: 114 ENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKH 173
           +   AL P      + A L LA  TA   +   A       L++ G G +G ++ +L K 
Sbjct: 118 DP--ALGP------QGALLALAA-TARHAVA-GAEVKVLPDLIV-GHGTLGRLLARLTK- 165

Query: 174 VFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK-FDVVFDAVGKMCI 227
             G S  A   +  +         D A  Y   + E  P + +  ++DA G   +
Sbjct: 166 AAGGSPPAVWETNPRR-------RDGATGYEVLDPEKDPRRDYRAIYDASGDPSL 213

[Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 308

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 9  YGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDV 68
          +G  ++++  E  V  P   E  + IKVV+ +L   D    L A+ +  +  P I G++ 
Sbjct: 19 WGAGEALVMEEVEVSPPQPLE--IRIKVVSTSLCRSD----LSAWESQ-ALFPRIFGHEA 71

Query: 69 AGVVEKVGSQVKKFKVGDEV 88
          +G+VE +G  V +F+ GD V
Sbjct: 72 SGIVESIGEGVTEFEKGDHV 91

Length = 378

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	100.0
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	100.0
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
cd08252	336	AL_MDR Arginate lyase and other MDR family members	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	100.0
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	100.0
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.98
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.98
PLN02702	364	L-idonate 5-dehydrogenase	99.98
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.98
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.98
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.98
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.98
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.98
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.98
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.98
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.97
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.97
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.97
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.97
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.97
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.97
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.97
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.97
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.97
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.97
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.97
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.96
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.95
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.93
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.92
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.83
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.81
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.43
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.1
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.94
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.6
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.48
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.38
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.35
PLN02494	477	adenosylhomocysteinase	98.32
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.25
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.17
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.06
COG0300	265	DltE Short-chain dehydrogenases of various substra	98.05
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	98.05
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.0
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.88
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.85
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.83
PRK08324	681	short chain dehydrogenase; Validated	97.81
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.79
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.74
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.69
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	97.58
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.53
PLN03209	576	translocon at the inner envelope of chloroplast su	97.5
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	97.47
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.47
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.44
PRK05993	277	short chain dehydrogenase; Provisional	97.39
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.38
PRK05693	274	short chain dehydrogenase; Provisional	97.34
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.28
PRK06139	330	short chain dehydrogenase; Provisional	97.27
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.27
PRK07060	245	short chain dehydrogenase; Provisional	97.25
PRK05872	296	short chain dehydrogenase; Provisional	97.23
PRK06182	273	short chain dehydrogenase; Validated	97.21
PRK04148	134	hypothetical protein; Provisional	97.2
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.17
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.16
PRK06057	255	short chain dehydrogenase; Provisional	97.16
PRK07825	273	short chain dehydrogenase; Provisional	97.14
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.12
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.1
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.1
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.09
PRK05866	293	short chain dehydrogenase; Provisional	97.09
COG2910	211	Putative NADH-flavin reductase [General function p	97.09
PRK06949	258	short chain dehydrogenase; Provisional	97.08
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.07
PRK12367	245	short chain dehydrogenase; Provisional	97.06
PRK07814	263	short chain dehydrogenase; Provisional	97.05
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.04
PRK06196	315	oxidoreductase; Provisional	97.02
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.0
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.0
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	96.99
PRK07831	262	short chain dehydrogenase; Provisional	96.99
PRK12742	237	oxidoreductase; Provisional	96.98
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.98
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.98
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.97
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.97
PRK08177	225	short chain dehydrogenase; Provisional	96.96
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	96.96
CHL00194	317	ycf39 Ycf39; Provisional	96.95
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.94
PRK07677	252	short chain dehydrogenase; Provisional	96.93
PRK07904	253	short chain dehydrogenase; Provisional	96.93
PRK05867	253	short chain dehydrogenase; Provisional	96.93
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.92
PRK08339	263	short chain dehydrogenase; Provisional	96.91
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.89
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.87
PRK07062	265	short chain dehydrogenase; Provisional	96.87
PRK06500	249	short chain dehydrogenase; Provisional	96.87
PRK12829	264	short chain dehydrogenase; Provisional	96.86
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.85
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	96.85
PRK06180	277	short chain dehydrogenase; Provisional	96.84
PRK06841	255	short chain dehydrogenase; Provisional	96.83
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	96.82
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.82
PRK07109	334	short chain dehydrogenase; Provisional	96.82
PRK05854	313	short chain dehydrogenase; Provisional	96.81
PRK07478	254	short chain dehydrogenase; Provisional	96.8
PRK09291	257	short chain dehydrogenase; Provisional	96.79
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.78
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.77
PRK09072	263	short chain dehydrogenase; Provisional	96.77
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.77
PRK08265	261	short chain dehydrogenase; Provisional	96.77
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.77
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.76
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.75
PRK07326	237	short chain dehydrogenase; Provisional	96.75
PRK06194	287	hypothetical protein; Provisional	96.73
PRK07576	264	short chain dehydrogenase; Provisional	96.72
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.72
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.71
PRK12828	239	short chain dehydrogenase; Provisional	96.71
PRK07063	260	short chain dehydrogenase; Provisional	96.71
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.7
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.7
PRK07454	241	short chain dehydrogenase; Provisional	96.7
PRK08862	227	short chain dehydrogenase; Provisional	96.7
PRK05876	275	short chain dehydrogenase; Provisional	96.68
PRK08618	325	ornithine cyclodeaminase; Validated	96.68
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.67
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.66
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.65
PRK08628	258	short chain dehydrogenase; Provisional	96.65
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.65
PRK07774	250	short chain dehydrogenase; Provisional	96.64
PRK05717	255	oxidoreductase; Validated	96.64
PRK07340	304	ornithine cyclodeaminase; Validated	96.64
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.64
PRK06125	259	short chain dehydrogenase; Provisional	96.63
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.63
PRK08643	256	acetoin reductase; Validated	96.63
PRK07890	258	short chain dehydrogenase; Provisional	96.61
PRK07035	252	short chain dehydrogenase; Provisional	96.6
PRK06197	306	short chain dehydrogenase; Provisional	96.6
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.59
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.59
PRK08589	272	short chain dehydrogenase; Validated	96.58
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.57
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.56
PRK12939	250	short chain dehydrogenase; Provisional	96.56
PRK07024	257	short chain dehydrogenase; Provisional	96.55
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.54
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.54
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.54
PRK06172	253	short chain dehydrogenase; Provisional	96.53
PRK08263	275	short chain dehydrogenase; Provisional	96.52
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.52
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.52
PRK08017	256	oxidoreductase; Provisional	96.52
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.52
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.51
PRK08251	248	short chain dehydrogenase; Provisional	96.51
PLN02253	280	xanthoxin dehydrogenase	96.5
PRK08264	238	short chain dehydrogenase; Validated	96.5
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.5
PRK06483	236	dihydromonapterin reductase; Provisional	96.5
PRK08267	260	short chain dehydrogenase; Provisional	96.5
PRK06138	252	short chain dehydrogenase; Provisional	96.48
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.48
PRK06720	169	hypothetical protein; Provisional	96.48
PRK06914	280	short chain dehydrogenase; Provisional	96.47
PRK07832	272	short chain dehydrogenase; Provisional	96.47
PRK14967	223	putative methyltransferase; Provisional	96.47
PRK06181	263	short chain dehydrogenase; Provisional	96.47
KOG0725	270	consensus Reductases with broad range of substrate	96.46
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.46
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.46
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.45
PRK06482	276	short chain dehydrogenase; Provisional	96.45
PRK06198	260	short chain dehydrogenase; Provisional	96.44
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.44
PRK05875	276	short chain dehydrogenase; Provisional	96.44
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.43
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.42
PRK06484	520	short chain dehydrogenase; Validated	96.41
PRK06179	270	short chain dehydrogenase; Provisional	96.4
PRK09242	257	tropinone reductase; Provisional	96.4
PRK06114	254	short chain dehydrogenase; Provisional	96.38
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.37
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.36
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	96.34
PRK06484	520	short chain dehydrogenase; Validated	96.34
PRK07067	257	sorbitol dehydrogenase; Provisional	96.33
PRK06953	222	short chain dehydrogenase; Provisional	96.33
PRK05884	223	short chain dehydrogenase; Provisional	96.32
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.32
PRK08226	263	short chain dehydrogenase; Provisional	96.31
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.29
PRK07856	252	short chain dehydrogenase; Provisional	96.29
PRK14982	340	acyl-ACP reductase; Provisional	96.29
PRK10538	248	malonic semialdehyde reductase; Provisional	96.29
PRK08303	305	short chain dehydrogenase; Provisional	96.28
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.27
PRK07074	257	short chain dehydrogenase; Provisional	96.26
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	96.25
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.25
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.23
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.22
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.2
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.19
PRK06398	258	aldose dehydrogenase; Validated	96.19
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.18
PRK07791	286	short chain dehydrogenase; Provisional	96.18
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.18
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.18
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.18
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.17
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.17
PRK08219	227	short chain dehydrogenase; Provisional	96.15
PRK06101	240	short chain dehydrogenase; Provisional	96.15
PRK07775	274	short chain dehydrogenase; Provisional	96.13
PRK08317	241	hypothetical protein; Provisional	96.13
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.13
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.12
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.11
PRK06141	314	ornithine cyclodeaminase; Validated	96.11
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.1
PRK05650	270	short chain dehydrogenase; Provisional	96.09
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.09
PLN02780	320	ketoreductase/ oxidoreductase	96.07
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.07
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.03
PRK07806	248	short chain dehydrogenase; Provisional	96.01
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.01
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.01
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	96.0
PRK06523	260	short chain dehydrogenase; Provisional	96.0
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	95.99
PRK07102	243	short chain dehydrogenase; Provisional	95.97
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	95.95
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	95.95
PLN02427	386	UDP-apiose/xylose synthase	95.94
PRK06128	300	oxidoreductase; Provisional	95.94
PRK12743	256	oxidoreductase; Provisional	95.92
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	95.91
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.91
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.91
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.9
PLN00203	519	glutamyl-tRNA reductase	95.86
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.85
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	95.85
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.84
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	95.82
PRK05599	246	hypothetical protein; Provisional	95.82
PRK08278	273	short chain dehydrogenase; Provisional	95.82
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	95.8
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.79
PRK05855	582	short chain dehydrogenase; Validated	95.79
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.78
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.74
PRK12938	246	acetyacetyl-CoA reductase; Provisional	95.72
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.71
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.7
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	95.69
PRK10258	251	biotin biosynthesis protein BioC; Provisional	95.67
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	95.67
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	95.65
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	95.65
PRK08703	239	short chain dehydrogenase; Provisional	95.65
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.65
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.64
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	95.63
PLN02686	367	cinnamoyl-CoA reductase	95.63
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	95.59
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.58
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	95.57
PRK12937	245	short chain dehydrogenase; Provisional	95.55
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.54
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.54
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.53
TIGR02415	254	23BDH acetoin reductases. One member of this famil	95.52
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.51
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.51
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	95.49
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.48
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.47
PRK09186	256	flagellin modification protein A; Provisional	95.46
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.44
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.43
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	95.42
PRK07201	657	short chain dehydrogenase; Provisional	95.42
PRK06701	290	short chain dehydrogenase; Provisional	95.42
PRK09135	249	pteridine reductase; Provisional	95.41
PRK12746	254	short chain dehydrogenase; Provisional	95.37
PLN02214	342	cinnamoyl-CoA reductase	95.37
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	95.35
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.35
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.33
PRK09134	258	short chain dehydrogenase; Provisional	95.3
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.29
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	95.29
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.28
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.26
PRK07574	385	formate dehydrogenase; Provisional	95.25
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.24
PRK07577	234	short chain dehydrogenase; Provisional	95.23
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	95.21
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.2
PRK08936	261	glucose-1-dehydrogenase; Provisional	95.19
PLN03139	386	formate dehydrogenase; Provisional	95.18
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.17
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	95.15
KOG1252	362	consensus Cystathionine beta-synthase and related	95.14
TIGR00438	188	rrmJ cell division protein FtsJ.	95.14
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	95.13
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.13
PLN02928	347	oxidoreductase family protein	95.11
PLN00198	338	anthocyanidin reductase; Provisional	95.11
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	95.1
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	95.09
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.09
PRK07023	243	short chain dehydrogenase; Provisional	95.06
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.06
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	95.04
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.04
PRK07985	294	oxidoreductase; Provisional	95.04
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.01
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	94.98
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	94.96
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	94.96
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.94
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.92
PRK07069	251	short chain dehydrogenase; Validated	94.89
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	94.89
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.88
PLN02650	351	dihydroflavonol-4-reductase	94.88
PRK13243	333	glyoxylate reductase; Reviewed	94.87
PRK12814	652	putative NADPH-dependent glutamate synthase small	94.86
PRK12744	257	short chain dehydrogenase; Provisional	94.86
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	94.85
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.85
PRK07041	230	short chain dehydrogenase; Provisional	94.84
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.81
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.8
PLN02166	436	dTDP-glucose 4,6-dehydratase	94.8
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.79
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	94.78
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.77
PLN02206	442	UDP-glucuronate decarboxylase	94.77
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	94.76
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	94.75
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	94.73
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.72
PRK06947	248	glucose-1-dehydrogenase; Provisional	94.7
PRK12935	247	acetoacetyl-CoA reductase; Provisional	94.69
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.69
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	94.67
KOG1208	314	consensus Dehydrogenases with different specificit	94.66
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.65
PRK13255	218	thiopurine S-methyltransferase; Reviewed	94.63
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	94.61
PLN03075	296	nicotianamine synthase; Provisional	94.58
PRK13984	604	putative oxidoreductase; Provisional	94.58
PRK07417	279	arogenate dehydrogenase; Reviewed	94.58
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.57
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	94.55
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	94.55
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	94.55
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.48
PRK08291	330	ectoine utilization protein EutC; Validated	94.48
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.47
PLN02653	340	GDP-mannose 4,6-dehydratase	94.47
PRK06940	275	short chain dehydrogenase; Provisional	94.44
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.44
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	94.44
PLN02244	340	tocopherol O-methyltransferase	94.43
PRK06123	248	short chain dehydrogenase; Provisional	94.43
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.41
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.41
PRK12824	245	acetoacetyl-CoA reductase; Provisional	94.38
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.35
PRK04457	262	spermidine synthase; Provisional	94.35
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.35
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.34
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.31
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	94.31
PRK06823	315	ornithine cyclodeaminase; Validated	94.28
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	94.25
PRK11207	197	tellurite resistance protein TehB; Provisional	94.24
PRK12827	249	short chain dehydrogenase; Provisional	94.22
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	94.22
PRK07402	196	precorrin-6B methylase; Provisional	94.2
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	94.17
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.16
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.15

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=4.3e-52  Score=347.94  Aligned_cols=243  Identities=35%  Similarity=0.497  Sum_probs=217.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++.+++++   ++++ |++.|+|+++||+|+++|+|+|++|++.++|.++.  ..+|.++|||.+|+|+++|++|+
T Consensus         4 mkA~~~~~~~~p---l~i~-e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~--~~~P~ipGHEivG~V~~vG~~V~   77 (339)
T COG1064           4 MKAAVLKKFGQP---LEIE-EVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV--PKLPLIPGHEIVGTVVEVGEGVT   77 (339)
T ss_pred             eEEEEEccCCCC---ceEE-eccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCC--CCCCccCCcceEEEEEEecCCCc
Confidence            899999999987   6888 89999999999999999999999999999999864  44999999999999999999999


Q ss_pred             CCCCCCEEEe-ccC------------------ccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYG-DIN------------------EKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~-~~~------------------~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      +|++||||.. ...                  +....+...+|+|+||+++|+.+++++|+++++++||.+.|+..|.|+
T Consensus        78 ~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~  157 (339)
T COG1064          78 GLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYR  157 (339)
T ss_pred             cCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEee
Confidence            9999999976 211                  111233457899999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc-CCCccEEEE
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL-PEKFDVVFD  220 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-~~~~d~vid  220 (255)
                      +++..+++||++|+|+| .|++|.+++|+|+++ |++|++++++++|++.++++|++++++..+++..+. .+.+|++||
T Consensus       158 alk~~~~~pG~~V~I~G-~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~  235 (339)
T COG1064         158 ALKKANVKPGKWVAVVG-AGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIID  235 (339)
T ss_pred             ehhhcCCCCCCEEEEEC-CcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEE
Confidence            99999999999999999 789999999999997 799999999999999999999999999775544332 334999999


Q ss_pred             CCCCccceeeeeeccccCCceEEEEeecc-CCCC
Q 025278          221 AVGKMCISIVYQKCDKFQEKSLINFGLFR-QEVP  253 (255)
Q Consensus       221 ~~G~~~~~~~~~~~~~~~~G~~v~~G~~~-~~~~  253 (255)
                      +++ ......++.+++ ++|+++++|... ++.+
T Consensus       236 tv~-~~~~~~~l~~l~-~~G~~v~vG~~~~~~~~  267 (339)
T COG1064         236 TVG-PATLEPSLKALR-RGGTLVLVGLPGGGPIP  267 (339)
T ss_pred             CCC-hhhHHHHHHHHh-cCCEEEEECCCCCcccC
Confidence            999 888888999998 899999999995 5433

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=5.6e-46  Score=316.98  Aligned_cols=238  Identities=43%  Similarity=0.594  Sum_probs=212.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..++.+ ..++++ |.|.|+|+++||+||+.+++||+.|....+|.. ....++|.++|.|++|+|+++|++++
T Consensus         1 mka~~~~~~g~~-~~l~~~-e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~-~~~~~~P~i~G~d~aG~V~avG~~V~   77 (326)
T COG0604           1 MKAVVVEEFGGP-EVLKVV-EVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLA-PPVRPLPFIPGSEAAGVVVAVGSGVT   77 (326)
T ss_pred             CeEEEEeccCCC-ceeEEE-ecCCCCCCCCeEEEEEEEeecChHHHHhccCCC-CCCCCCCCcccceeEEEEEEeCCCCC
Confidence            999999999998 448999 899999999999999999999999999999872 23456899999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                      .+++||||+....    .  ...|+|+||..+|++.++++|+++++++||.++++++|||+++. ..++++|++|||+||
T Consensus        78 ~~~~GdrV~~~~~----~--~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~ga  151 (326)
T COG0604          78 GFKVGDRVAALGG----V--GRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGA  151 (326)
T ss_pred             CcCCCCEEEEccC----C--CCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecC
Confidence            9999999999740    0  04799999999999999999999999999999999999999995 588999999999999


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|.+++|+|+++ |+++++++.+++|.++++++|++++++|.++++.+.      .+++|+|||++|+..... ++.
T Consensus       152 aGgVG~~aiQlAk~~-G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~~~~~-~l~  229 (326)
T COG0604         152 AGGVGSAAIQLAKAL-GATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAA-SLA  229 (326)
T ss_pred             CchHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCHHHHHH-HHH
Confidence            999999999999996 768888888888888999999999999988876653      237999999999887655 566


Q ss_pred             ccccCCceEEEEeeccC
Q 025278          234 CDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~~  250 (255)
                      .++ ++|+++.+|..++
T Consensus       230 ~l~-~~G~lv~ig~~~g  245 (326)
T COG0604         230 ALA-PGGRLVSIGALSG  245 (326)
T ss_pred             Hhc-cCCEEEEEecCCC
Confidence            666 6799999999884

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=6.1e-44  Score=291.17  Aligned_cols=241  Identities=25%  Similarity=0.367  Sum_probs=205.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCC-CCCeEEEEEeEeecChHhHHHHcCCCC-CCCCCCCcccccceEEEEEEeCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSL-REDQVLIKVVAAALNPIDFKRMLGAFS-ATDSPLPTIPGYDVAGVVEKVGSQ   78 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~-~~~eV~V~v~~~~i~~~D~~~~~g~~~-~~~~~~p~~~G~e~~G~V~~~G~~   78 (255)
                      |+|+++.++++.    +++ +.|.|++ .|+||+|++.++|||++|+|+|..... ....+.|.++|||.+|+|.++|+.
T Consensus         5 ~~A~vl~g~~di----~i~-~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~   79 (354)
T KOG0024|consen    5 NLALVLRGKGDI----RIE-QRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDE   79 (354)
T ss_pred             cceeEEEccCce----eEe-eCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccc
Confidence            789999999987    999 8999987 999999999999999999999965432 223467999999999999999999


Q ss_pred             CCCCCCCCEEEeccCccc-------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhcc-chhHHH
Q 025278           79 VKKFKVGDEVYGDINEKA-------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL-PLATET  138 (255)
Q Consensus        79 v~~~~~Gd~V~~~~~~~~-------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l-~~~~~t  138 (255)
                      |+++++||||+..+.-.+                   ..-...+|++++|++.+++.|+++|++++++++|++ |  ++.
T Consensus        80 Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~eP--LsV  157 (354)
T KOG0024|consen   80 VKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEP--LSV  157 (354)
T ss_pred             ccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcccccc--hhh
Confidence            999999999986543111                   011235799999999999999999999999998877 5  455


Q ss_pred             HHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc-ccc---c---
Q 025278          139 AYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IED---L---  211 (255)
Q Consensus       139 a~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~---~---  211 (255)
                      +|||.+++++++|++|||+| +|++|+++..+|++++..+|++++..++|++.++++|++.+.+..... ..+   .   
T Consensus       158 ~~HAcr~~~vk~Gs~vLV~G-AGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~  236 (354)
T KOG0024|consen  158 GVHACRRAGVKKGSKVLVLG-AGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEK  236 (354)
T ss_pred             hhhhhhhcCcccCCeEEEEC-CcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHh
Confidence            99999999999999999999 899999999999998778899999999999999999999887765533 111   1   


Q ss_pred             --C-CCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 --P-EKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 --~-~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                        . ..+|++|||+|...+...++...+ .+|+++++|+-..
T Consensus       237 ~~g~~~~d~~~dCsG~~~~~~aai~a~r-~gGt~vlvg~g~~  277 (354)
T KOG0024|consen  237 ALGKKQPDVTFDCSGAEVTIRAAIKATR-SGGTVVLVGMGAE  277 (354)
T ss_pred             hccccCCCeEEEccCchHHHHHHHHHhc-cCCEEEEeccCCC
Confidence              1 249999999999988888888888 6899999998554

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.2e-44  Score=289.76  Aligned_cols=243  Identities=30%  Similarity=0.390  Sum_probs=205.5

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      ++|.+..++.. ..+++. +++.|+++++||+|+++|||||++|++.+.|.++.  ..+|.++|||.+|+|+++|++|++
T Consensus        11 ~g~~~~~~~G~-l~p~~~-~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~--s~~PlV~GHEiaG~VvkvGs~V~~   86 (360)
T KOG0023|consen   11 FGWAARDPSGV-LSPEVF-SFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL--SKYPLVPGHEIAGVVVKVGSNVTG   86 (360)
T ss_pred             EEEEEECCCCC-CCccee-EcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc--ccCCccCCceeeEEEEEECCCccc
Confidence            57888888775 445778 89999999999999999999999999999999864  789999999999999999999999


Q ss_pred             CCCCCEEEec-----c--------------C-------ccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchh
Q 025278           82 FKVGDEVYGD-----I--------------N-------EKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLA  135 (255)
Q Consensus        82 ~~~Gd~V~~~-----~--------------~-------~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~  135 (255)
                      |++||||-.=     |              +       ....++....|+|++|+++++..+++||++++.+.||.+.|+
T Consensus        87 ~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCa  166 (360)
T KOG0023|consen   87 FKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCA  166 (360)
T ss_pred             ccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhc
Confidence            9999998321     1              1       112233445677999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-hhHHHHHHcCCCEEEcCC-Ccccccc-C
Q 025278          136 TETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLDLLRSLGADLAIDYT-KENIEDL-P  212 (255)
Q Consensus       136 ~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-~~~~~~~~~g~~~v~~~~-~~~~~~~-~  212 (255)
                      ..|.|.++...++.||++|.|.| +|++|.+++|+|+++ |.+|+++++++ +|.+..+.+||+..++.. +.++.+. .
T Consensus       167 GITvYspLk~~g~~pG~~vgI~G-lGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~  244 (360)
T KOG0023|consen  167 GITVYSPLKRSGLGPGKWVGIVG-LGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIM  244 (360)
T ss_pred             ceEEeehhHHcCCCCCcEEEEec-CcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHH
Confidence            99999999999999999999999 677999999999997 99999999987 566667889999988876 5554332 3


Q ss_pred             CCccEEEECCC--CccceeeeeeccccCCceEEEEeeccCC
Q 025278          213 EKFDVVFDAVG--KMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       213 ~~~d~vid~~G--~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      +..|.++|++.  +......+..++| .+|++|++|.+.++
T Consensus       245 ~~~dg~~~~v~~~a~~~~~~~~~~lk-~~Gt~V~vg~p~~~  284 (360)
T KOG0023|consen  245 KTTDGGIDTVSNLAEHALEPLLGLLK-VNGTLVLVGLPEKP  284 (360)
T ss_pred             HhhcCcceeeeeccccchHHHHHHhh-cCCEEEEEeCcCCc
Confidence            34566676666  7777777788888 89999999999863

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=6.4e-43  Score=275.62  Aligned_cols=238  Identities=34%  Similarity=0.439  Sum_probs=218.1

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      |.+++++.|.. ++++++ +.|.|+|.++|++||..|+|+|..|..+..|.+.  +.+.|+++|.|++|+|+++|+.+++
T Consensus        10 k~i~v~e~Ggy-dvlk~e-d~pv~~papgel~iknka~GlNfid~y~RkGlY~--~~plPytpGmEaaGvVvAvG~gvtd   85 (336)
T KOG1197|consen   10 KCIVVTEFGGY-DVLKLE-DRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD--PAPLPYTPGMEAAGVVVAVGEGVTD   85 (336)
T ss_pred             eEEEEeccCCc-ceEEEe-eecCCCCCCCceEEeehhcCccHHHHHHhccccC--CCCCCcCCCcccceEEEEecCCccc
Confidence            67889999998 999999 9999999999999999999999999999999884  5688999999999999999999999


Q ss_pred             CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcCC
Q 025278           82 FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGGA  160 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga~  160 (255)
                      +++||||....         +.|.|+|+..+|...+.++|+.++++.+|++.+..+|||..++ ..++++|++||+|.|+
T Consensus        86 rkvGDrVayl~---------~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAA  156 (336)
T KOG1197|consen   86 RKVGDRVAYLN---------PFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAA  156 (336)
T ss_pred             cccccEEEEec---------cchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence            99999998865         3799999999999999999999999999999999999999985 5789999999999999


Q ss_pred             chHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeeec
Q 025278          161 GGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQKC  234 (255)
Q Consensus       161 g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~~  234 (255)
                      |++|++++|++|.. ++.+|++..+.+|.+.+++.|+++.|+++.+++.+.      .+|+|+++|.+|.+.. ..++.+
T Consensus       157 GGVGlll~Ql~ra~-~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~dt~-~~sl~~  234 (336)
T KOG1197|consen  157 GGVGLLLCQLLRAV-GAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSVGKDTF-AKSLAA  234 (336)
T ss_pred             ccHHHHHHHHHHhc-CcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccccchhh-HHHHHH
Confidence            99999999999995 999999999999999999999999999998886653      4699999999998764 555777


Q ss_pred             cccCCceEEEEeeccCCCCCC
Q 025278          235 DKFQEKSLINFGLFRQEVPKF  255 (255)
Q Consensus       235 ~~~~~G~~v~~G~~~~~~~~~  255 (255)
                      ++ +.|+++.||+.++..++|
T Consensus       235 Lk-~~G~mVSfG~asgl~~p~  254 (336)
T KOG1197|consen  235 LK-PMGKMVSFGNASGLIDPI  254 (336)
T ss_pred             hc-cCceEEEeccccCCCCCe
Confidence            77 789999999999876654

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=1.5e-42  Score=285.30  Aligned_cols=241  Identities=25%  Similarity=0.337  Sum_probs=213.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      +||++..+++++   |+++ ++++++|++|||+||+.++|+|++|....+|..|   ..+|.++|||++|+|+++|+.|+
T Consensus         3 ~~aAV~~~~~~P---l~i~-ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p---~~~P~vLGHEgAGiVe~VG~gVt   75 (366)
T COG1062           3 TRAAVAREAGKP---LEIE-EVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDP---EGFPAVLGHEGAGIVEAVGEGVT   75 (366)
T ss_pred             ceEeeeecCCCC---eEEE-EEecCCCCCCeEEEEEEEeeccccchhhhcCCCC---CCCceecccccccEEEEecCCcc
Confidence            579999999998   8999 8999999999999999999999999999999876   34899999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc--------------------------CC-----------CCC--CcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINEKAL--------------------------DH-----------PKR--NGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~--------------------------~~-----------~~~--~g~~~~~~~~~~~~~~~lp  121 (255)
                      ++++||+|+..+...+.                          ++           .+.  .++|+||.+++..++++++
T Consensus        76 ~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~  155 (366)
T COG1062          76 SVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKID  155 (366)
T ss_pred             ccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECC
Confidence            99999999876541110                          11           011  2499999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE
Q 025278          122 KNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA  200 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v  200 (255)
                      ++.+++.++++.|..+|.+-++ +.+++++|++|.|+| .|++|++++|-|+..+..++|++|.+++|++++++||++++
T Consensus       156 ~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~G-lGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~  234 (366)
T COG1062         156 PDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFG-LGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHF  234 (366)
T ss_pred             CCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEe-ccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCcee
Confidence            9999999999999999999987 789999999999999 99999999999999867788999999999999999999999


Q ss_pred             EcCCCcc-ccc----cC-CCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          201 IDYTKEN-IED----LP-EKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       201 ~~~~~~~-~~~----~~-~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +|+.+.. ..+    .. .|+|.+|||+|....+..++.+.. +.|+.+.+|....
T Consensus       235 vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~-~~G~~v~iGv~~~  289 (366)
T COG1062         235 VNPKEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATH-RGGTSVIIGVAGA  289 (366)
T ss_pred             ecchhhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHh-cCCeEEEEecCCC
Confidence            9997663 332    23 399999999999999999999988 6999999998764

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=5.8e-41  Score=292.64  Aligned_cols=243  Identities=28%  Similarity=0.341  Sum_probs=206.2

Q ss_pred             CeEEEEcccCCC-----ccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEe
Q 025278            1 MKAWVYKEYGNS-----QSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKV   75 (255)
Q Consensus         1 mka~v~~~~~~~-----~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~   75 (255)
                      |||+++.++|.+     .+.++++ +.+.|+|+++||+||+.+++||++|++.+.|.++   ..+|.++|||++|+|+++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~-~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~---~~~p~i~GhE~~G~V~~v   76 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIE-EVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP---RPLPMALGHEAAGVVVEV   76 (371)
T ss_pred             CcceEEEecccccccccCCCceEE-EeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC---CCCCccCCccceeEEEEe
Confidence            999999998753     2568898 8999999999999999999999999999988753   346899999999999999


Q ss_pred             CCCCCCCCCCCEEEeccCccc------cC---------------CC------------------CCCcceeeEEeeeCCc
Q 025278           76 GSQVKKFKVGDEVYGDINEKA------LD---------------HP------------------KRNGSLAEYTAVEENL  116 (255)
Q Consensus        76 G~~v~~~~~Gd~V~~~~~~~~------~~---------------~~------------------~~~g~~~~~~~~~~~~  116 (255)
                      |++++++++||||+..+...+      ..               +.                  ...|+|+||++++...
T Consensus        77 G~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~  156 (371)
T cd08281          77 GEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRS  156 (371)
T ss_pred             CCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccc
Confidence            999999999999987421100      00               00                  0137999999999999


Q ss_pred             eEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHH
Q 025278          117 LALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRS  194 (255)
Q Consensus       117 ~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~  194 (255)
                      ++++|+++++++++.++++..|||+++ +...+++|++|+|+| +|++|++++|+|+.+ |+ +|++++.+++|++++++
T Consensus       157 ~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~  234 (371)
T cd08281         157 VVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVG-LGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARE  234 (371)
T ss_pred             eEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH
Confidence            999999999999999999999999997 568899999999998 799999999999996 87 68899999999999999


Q ss_pred             cCCCEEEcCCCcccccc-----CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          195 LGADLAIDYTKENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       195 ~g~~~v~~~~~~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +|+++++++.+.++.+.     .+++|++|||+|.......++++++ ++|+++.+|...+
T Consensus       235 ~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~-~~G~iv~~G~~~~  294 (371)
T cd08281         235 LGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITR-RGGTTVTAGLPDP  294 (371)
T ss_pred             cCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHh-cCCEEEEEccCCC
Confidence            99999999876553321     2379999999998777777788888 7999999998753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=1.4e-40  Score=286.92  Aligned_cols=241  Identities=29%  Similarity=0.406  Sum_probs=204.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..++.    ++++ +.+.|+|.++||+||+.+++||++|++.+.+.++. ...+|.++|||++|+|+++|++++
T Consensus         1 mka~~~~~~~~----l~~~-~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~   74 (339)
T cd08239           1 MRGAVFPGDRT----VELR-EFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRA-PAYQGVIPGHEPAGVVVAVGPGVT   74 (339)
T ss_pred             CeEEEEecCCc----eEEE-ecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCc-cCCCCceeccCceEEEEEECCCCc
Confidence            99999997654    5888 89999999999999999999999999988776432 223578999999999999999999


Q ss_pred             CCCCCCEEEeccCccc-------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDINEKA-------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~-------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      ++++||||+..+...+                   ..+....|+|+||++++...++++|+++++++++.+++++.|||+
T Consensus        75 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~  154 (339)
T cd08239          75 HFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYH  154 (339)
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHH
Confidence            9999999987642211                   012234699999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCcccc---cc--CCCc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIE---DL--PEKF  215 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~---~~--~~~~  215 (255)
                      +++...+++|++|+|+| +|++|++++|+|+++ |++ +++++++++|+++++++|+++++++.+.+..   +.  .+++
T Consensus       155 ~l~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~  232 (339)
T cd08239         155 ALRRVGVSGRDTVLVVG-AGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGA  232 (339)
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCC
Confidence            99888899999999998 699999999999996 888 9999999999999999999999998664421   11  2379


Q ss_pred             cEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          216 DVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       216 d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |++|||+|+......+.++++ .+|+++.+|...+
T Consensus       233 d~vid~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  266 (339)
T cd08239         233 DVAIECSGNTAARRLALEAVR-PWGRLVLVGEGGE  266 (339)
T ss_pred             CEEEECCCCHHHHHHHHHHhh-cCCEEEEEcCCCC
Confidence            999999998876566677777 7899999998654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=1.4e-40  Score=289.05  Aligned_cols=240  Identities=24%  Similarity=0.288  Sum_probs=204.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.+   ++++ +.|.|+|+++||+||+.++++|++|++.++|.++   ..+|.++|||++|+|+++|++++
T Consensus         2 mka~~~~~~~~~---~~~~-~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~---~~~p~i~G~e~~G~V~~vG~~v~   74 (358)
T TIGR03451         2 VRGVIARSKGAP---VELE-TIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN---DEFPFLLGHEAAGVVEAVGEGVT   74 (358)
T ss_pred             cEEEEEccCCCC---CEEE-EEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc---ccCCcccccceEEEEEEeCCCCc
Confidence            999999999875   5888 8999999999999999999999999999988653   34688999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc--------------------------CCC-----CCCcceeeEEeeeCCceEeCCCCCCHHhh
Q 025278           81 KFKVGDEVYGDINEKAL--------------------------DHP-----KRNGSLAEYTAVEENLLALKPKNLSFVEA  129 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~--------------------------~~~-----~~~g~~~~~~~~~~~~~~~lp~~~~~~~a  129 (255)
                      ++++||||+..+...+.                          .+.     ...|+|+||+.++...++++|++++++++
T Consensus        75 ~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~a  154 (358)
T TIGR03451        75 DVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAA  154 (358)
T ss_pred             ccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHh
Confidence            99999999874211000                          000     12589999999999999999999999999


Q ss_pred             hccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCcc
Q 025278          130 ASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKEN  207 (255)
Q Consensus       130 a~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~  207 (255)
                      +.+++++.++|+++ +...+++|++|+|+| +|++|++++|+|+.+ |++ +++++++++|+++++++|+++++++.+.+
T Consensus       155 a~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~  232 (358)
T TIGR03451       155 GLLGCGVMAGLGAAVNTGGVKRGDSVAVIG-CGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGATHTVNSSGTD  232 (358)
T ss_pred             hhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcC
Confidence            99988888999887 567899999999998 799999999999996 875 88899999999999999999999987654


Q ss_pred             ccc----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          208 IED----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       208 ~~~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +.+    .  ..++|++|||+|+......++.+++ ++|+++.+|...+
T Consensus       233 ~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~-~~G~iv~~G~~~~  280 (358)
T TIGR03451       233 PVEAIRALTGGFGADVVIDAVGRPETYKQAFYARD-LAGTVVLVGVPTP  280 (358)
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhc-cCCEEEEECCCCC
Confidence            322    1  2379999999998766777777787 7899999998754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=2.5e-40  Score=289.52  Aligned_cols=242  Identities=21%  Similarity=0.290  Sum_probs=203.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++.++++.   ++++ +.+.|+|+++||+||+.++|||++|++.+.|.++. ...+|.++|||++|+|+++|++++
T Consensus        11 mka~~~~~~~~~---~~~~-e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~~p~i~GhE~~G~V~~vG~~v~   85 (381)
T PLN02740         11 CKAAVAWGPGEP---LVME-EIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEA-QRAYPRILGHEAAGIVESVGEGVE   85 (381)
T ss_pred             eEEEEEecCCCC---cEEE-EeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcc-cCCCCccccccceEEEEEeCCCCC
Confidence            899999988864   5777 89999999999999999999999999999887532 235789999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc--------------C-------------C---------------CCCCcceeeEEeeeCCceE
Q 025278           81 KFKVGDEVYGDINEKAL--------------D-------------H---------------PKRNGSLAEYTAVEENLLA  118 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~--------------~-------------~---------------~~~~g~~~~~~~~~~~~~~  118 (255)
                      ++++||||+......+.              .             +               ....|+|+||+++|.+.++
T Consensus        86 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~  165 (381)
T PLN02740         86 DLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVV  165 (381)
T ss_pred             cCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeE
Confidence            99999999875421100              0             0               0025899999999999999


Q ss_pred             eCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcC
Q 025278          119 LKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLG  196 (255)
Q Consensus       119 ~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g  196 (255)
                      ++|++++.++++.+++++.|||+++ +..++++|++|+|+| +|++|++++|+|+.+ |+ +|++++++++|++.++++|
T Consensus       166 ~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~~~G  243 (381)
T PLN02740        166 KIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFG-LGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGKEMG  243 (381)
T ss_pred             ECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHcC
Confidence            9999999999999998999999987 568899999999999 799999999999996 77 6999999999999999999


Q ss_pred             CCEEEcCCCcc--ccc----c-CCCccEEEECCCCccceeeeeeccccCC-ceEEEEeeccC
Q 025278          197 ADLAIDYTKEN--IED----L-PEKFDVVFDAVGKMCISIVYQKCDKFQE-KSLINFGLFRQ  250 (255)
Q Consensus       197 ~~~v~~~~~~~--~~~----~-~~~~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~~G~~~~  250 (255)
                      +++++|+.+.+  +.+    . .+++|++||++|+......++.+++ ++ |+++.+|...+
T Consensus       244 a~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~-~g~G~~v~~G~~~~  304 (381)
T PLN02740        244 ITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTH-DGWGLTVLLGIHPT  304 (381)
T ss_pred             CcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhh-cCCCEEEEEccCCC
Confidence            99999876532  322    1 2379999999998877777777776 54 99999998764

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-40  Score=284.95  Aligned_cols=238  Identities=18%  Similarity=0.272  Sum_probs=195.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHc-CCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRML-GAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~-g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++.++++.    +++ +++.| +.++||+||+.++|||++|++++. |..+....++|.++|||++|+|+++  ++
T Consensus         5 ~~~~~~~~~~~~----~~~-~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v   76 (343)
T PRK09880          5 TQSCVVAGKKDV----AVT-EQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DS   76 (343)
T ss_pred             ceEEEEecCCce----EEE-ecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cC
Confidence            689999988876    888 78887 689999999999999999999875 4332223457899999999999999  78


Q ss_pred             CCCCCCCEEEeccCcccc------------------CC-----CCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhH
Q 025278           80 KKFKVGDEVYGDINEKAL------------------DH-----PKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLAT  136 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~------------------~~-----~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~  136 (255)
                      ++|++||||+..+...+.                  .+     ...+|+|+||++++.+.++++|+++++++++ +..++
T Consensus        77 ~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~~~  155 (343)
T PRK09880         77 SGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FAEPL  155 (343)
T ss_pred             ccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hhcHH
Confidence            889999999865321100                  01     1246999999999999999999999987655 44566


Q ss_pred             HHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCcccccc---C
Q 025278          137 ETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL---P  212 (255)
Q Consensus       137 ~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~---~  212 (255)
                      .++|+++++....+|++|+|+| +|++|++++|+|+++ |+ ++++++++++|+++++++|+++++|+.++++.+.   .
T Consensus       156 ~~a~~al~~~~~~~g~~VlV~G-~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~  233 (343)
T PRK09880        156 AVAIHAAHQAGDLQGKRVFVSG-VGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEK  233 (343)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccC
Confidence            7899999877777899999998 699999999999996 77 6888999999999999999999999876554432   2


Q ss_pred             CCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          213 EKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       213 ~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +++|++|||+|+......+.++++ ++|+++.+|....
T Consensus       234 g~~D~vid~~G~~~~~~~~~~~l~-~~G~iv~~G~~~~  270 (343)
T PRK09880        234 GYFDVSFEVSGHPSSINTCLEVTR-AKGVMVQVGMGGA  270 (343)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhh-cCCEEEEEccCCC
Confidence            359999999998776777788888 8999999997544

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=7.5e-40  Score=285.31  Aligned_cols=240  Identities=27%  Similarity=0.361  Sum_probs=202.4

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..++..   ++++ +.|.|+|.++||+||+.+++||++|++.+.|.++.  ..+|.++|||++|+|+++|++++
T Consensus         2 ~~a~~~~~~~~~---l~~~-~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~--~~~p~i~GhE~~G~V~~vG~~v~   75 (368)
T TIGR02818         2 SRAAVAWAAGQP---LKIE-EVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE--GVFPVILGHEGAGIVEAVGEGVT   75 (368)
T ss_pred             ceEEEEecCCCC---eEEE-EecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC--CCCCeeeccccEEEEEEECCCCc
Confidence            899999987754   6888 89999999999999999999999999999887642  35689999999999999999999


Q ss_pred             CCCCCCEEEeccCccc--------------cC-------CC------------------CCCcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINEKA--------------LD-------HP------------------KRNGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~--------------~~-------~~------------------~~~g~~~~~~~~~~~~~~~lp  121 (255)
                      ++++||||+..+...+              ..       +.                  ...|+|+||+++|...++++|
T Consensus        76 ~~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP  155 (368)
T TIGR02818        76 SVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKIN  155 (368)
T ss_pred             cCCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECC
Confidence            9999999987532100              00       00                  013799999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCE
Q 025278          122 KNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADL  199 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~  199 (255)
                      +++++++++.+++++.|+|+++ ++..+++|++|+|+| +|++|++++|+|+.+ |+ +|++++++++|+++++++|+++
T Consensus       156 ~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a~~~Ga~~  233 (368)
T TIGR02818       156 PAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFG-LGGIGLSVIQGARMA-KASRIIAIDINPAKFELAKKLGATD  233 (368)
T ss_pred             CCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCCe
Confidence            9999999999999999999998 568899999999998 799999999999996 77 7999999999999999999999


Q ss_pred             EEcCCC--ccccc----c-CCCccEEEECCCCccceeeeeeccccC-CceEEEEeecc
Q 025278          200 AIDYTK--ENIED----L-PEKFDVVFDAVGKMCISIVYQKCDKFQ-EKSLINFGLFR  249 (255)
Q Consensus       200 v~~~~~--~~~~~----~-~~~~d~vid~~G~~~~~~~~~~~~~~~-~G~~v~~G~~~  249 (255)
                      ++++.+  .++.+    . .+++|++|||+|+......++++++ + +|+++.+|...
T Consensus       234 ~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~-~~~G~~v~~g~~~  290 (368)
T TIGR02818       234 CVNPNDYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCH-KGWGESIIIGVAG  290 (368)
T ss_pred             EEcccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhh-cCCCeEEEEeccC
Confidence            998763  22211    1 2379999999998777777777776 5 49999999864

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2.7e-39  Score=277.70  Aligned_cols=238  Identities=24%  Similarity=0.260  Sum_probs=201.2

Q ss_pred             EEEEcccCCCc-cceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            3 AWVYKEYGNSQ-SVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         3 a~v~~~~~~~~-~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      |+.+..+|.+. ..++++ +.|.|+|+++||+||+.+++||++|++.+.|.++.  ..+|.++|||++|+|+++|+++++
T Consensus         1 ~~~~~~~g~~~~~~l~~~-~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~   77 (329)
T TIGR02822         1 AWEVERPGPIEDGPLRFV-ERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV--HRPRVTPGHEVVGEVAGRGADAGG   77 (329)
T ss_pred             CeeeecCCcCCCCCceEE-eCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC--CCCCccCCcceEEEEEEECCCCcc
Confidence            46677777542 357899 89999999999999999999999999999987642  234789999999999999999999


Q ss_pred             CCCCCEEEeccC-----c--------------cccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           82 FKVGDEVYGDIN-----E--------------KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        82 ~~~Gd~V~~~~~-----~--------------~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      +++||||+..+.     .              ....+...+|+|+||+.+|...++++|+++++++++.+++++.|||++
T Consensus        78 ~~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~  157 (329)
T TIGR02822        78 FAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRA  157 (329)
T ss_pred             cCCCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHH
Confidence            999999975321     0              001122346999999999999999999999999999889999999999


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECC
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      +++.++++|++|+|+| +|++|++++|+|+.+ |+++++++++++|+++++++|+++++++.+..    .+++|+++++.
T Consensus       158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~----~~~~d~~i~~~  231 (329)
T TIGR02822       158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASAGGAYDTP----PEPLDAAILFA  231 (329)
T ss_pred             HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCceeccccccC----cccceEEEECC
Confidence            9888899999999999 599999999999995 88999999999999999999999999864321    24789999999


Q ss_pred             CCccceeeeeeccccCCceEEEEeeccC
Q 025278          223 GKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       223 G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |.......++++++ ++|+++.+|...+
T Consensus       232 ~~~~~~~~~~~~l~-~~G~~v~~G~~~~  258 (329)
T TIGR02822       232 PAGGLVPPALEALD-RGGVLAVAGIHLT  258 (329)
T ss_pred             CcHHHHHHHHHhhC-CCcEEEEEeccCc
Confidence            87777777788888 7999999998543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=5.9e-39  Score=281.26  Aligned_cols=238  Identities=23%  Similarity=0.300  Sum_probs=190.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCC-------CCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLR-------EDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVE   73 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~-------~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~   73 (255)
                      |||+++.++++.    +++ +.|.|+|+       +|||+||+.++|||++|+++++|.++   ..+|.++|||++|+|+
T Consensus         3 mka~v~~~~~~~----~~~-e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~---~~~p~i~GhE~~G~V~   74 (393)
T TIGR02819         3 NRGVVYLGPGKV----EVQ-DIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT---APTGLVLGHEITGEVI   74 (393)
T ss_pred             ceEEEEecCCce----eEE-eccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC---CCCCccccceeEEEEE
Confidence            999999988865    888 89988874       68999999999999999999988643   3568999999999999


Q ss_pred             EeCCCCCCCCCCCEEEeccCccc--------------cC----------CC----CCCcceeeEEeeeCC--ceEeCCCC
Q 025278           74 KVGSQVKKFKVGDEVYGDINEKA--------------LD----------HP----KRNGSLAEYTAVEEN--LLALKPKN  123 (255)
Q Consensus        74 ~~G~~v~~~~~Gd~V~~~~~~~~--------------~~----------~~----~~~g~~~~~~~~~~~--~~~~lp~~  123 (255)
                      ++|++++++++||||+..+...+              ..          +.    ..+|+|+||+++|..  .++++|++
T Consensus        75 ~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~  154 (393)
T TIGR02819        75 EKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDR  154 (393)
T ss_pred             EEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCc
Confidence            99999999999999976421100              00          10    135999999999964  79999998


Q ss_pred             CCH----HhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEE-EecChhhHHHHHHcCCC
Q 025278          124 LSF----VEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVA-ATSSTAKLDLLRSLGAD  198 (255)
Q Consensus       124 ~~~----~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~-~~~~~~~~~~~~~~g~~  198 (255)
                      ++.    .+++.+..++.++|+++++..+++|++|+|.| +|++|++++|+|+.+ |+++++ ++++++|+++++++|++
T Consensus       155 ~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G-~G~iG~~aiqlAk~~-Ga~~vi~~d~~~~r~~~a~~~Ga~  232 (393)
T TIGR02819       155 DQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAG-AGPVGLAAAASAQLL-GAAVVIVGDLNPARLAQARSFGCE  232 (393)
T ss_pred             ccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHcCCe
Confidence            753    34566777888999999888899999999976 899999999999996 877554 56788899999999997


Q ss_pred             EEEcCCCccccc----c--CCCccEEEECCCCc--------------cceeeeeeccccCCceEEEEeecc
Q 025278          199 LAIDYTKENIED----L--PEKFDVVFDAVGKM--------------CISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       199 ~v~~~~~~~~~~----~--~~~~d~vid~~G~~--------------~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .+.+..+.++.+    .  .+++|++||++|.+              .....++.+++ ++|+++++|.+.
T Consensus       233 ~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~i~~~G~~~  302 (393)
T TIGR02819       233 TVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTR-VGGAIGIPGLYV  302 (393)
T ss_pred             EEecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhh-CCCEEEEeeecC
Confidence            543333323221    1  24799999999986              35677788888 899999999973

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=7.7e-39  Score=279.03  Aligned_cols=240  Identities=26%  Similarity=0.335  Sum_probs=201.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..++..   ++++ +.|.|+|+++||+||+.+++||++|++.+.|.++.  ..+|.++|||++|+|+++|++++
T Consensus         3 ~~a~~~~~~~~~---~~~~-~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~--~~~p~v~G~E~~G~V~~vG~~v~   76 (368)
T cd08300           3 CKAAVAWEAGKP---LSIE-EVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE--GLFPVILGHEGAGIVESVGEGVT   76 (368)
T ss_pred             ceEEEEecCCCC---cEEE-EeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc--CCCCceeccceeEEEEEeCCCCc
Confidence            899998877654   6888 89999999999999999999999999999887642  35789999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc------C---------------C------------------CCCCcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINEKAL------D---------------H------------------PKRNGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~------~---------------~------------------~~~~g~~~~~~~~~~~~~~~lp  121 (255)
                      ++++||||+..+...+.      .               +                  ....|+|+||++++...++++|
T Consensus        77 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  156 (368)
T cd08300          77 SVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKIN  156 (368)
T ss_pred             cCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCC
Confidence            99999999875221000      0               0                  0013689999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCE
Q 025278          122 KNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADL  199 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~  199 (255)
                      +++++++++.+++++.|+|+++ +...+++|++|+|+| +|++|++++|+|+.+ |+ ++++++++++|+++++++|+++
T Consensus       157 ~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~lGa~~  234 (368)
T cd08300         157 PEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFG-LGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKFGATD  234 (368)
T ss_pred             CCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCCE
Confidence            9999999999998999999987 568899999999998 799999999999996 88 6999999999999999999999


Q ss_pred             EEcCCCc--cccc----c-CCCccEEEECCCCccceeeeeeccccCC-ceEEEEeecc
Q 025278          200 AIDYTKE--NIED----L-PEKFDVVFDAVGKMCISIVYQKCDKFQE-KSLINFGLFR  249 (255)
Q Consensus       200 v~~~~~~--~~~~----~-~~~~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~~G~~~  249 (255)
                      ++++.+.  ++.+    . .+++|+|||++|+......+.++++ ++ |+++.+|...
T Consensus       235 ~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~-~~~G~~v~~g~~~  291 (368)
T cd08300         235 CVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACH-KGWGTSVIIGVAA  291 (368)
T ss_pred             EEcccccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhc-cCCCeEEEEccCC
Confidence            9988653  2222    1 2379999999998766677777776 54 9999999874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=1.2e-38  Score=277.81  Aligned_cols=241  Identities=22%  Similarity=0.283  Sum_probs=202.4

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++.++++.   ++++ +.+.|+|+++||+||+.+++||++|++.++|..+  ...+|.++|||++|+|+++|++++
T Consensus         3 ~ka~~~~~~~~~---~~l~-~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~--~~~~p~i~G~e~~G~V~~vG~~v~   76 (369)
T cd08301           3 CKAAVAWEAGKP---LVIE-EVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQ--TPLFPRILGHEAAGIVESVGEGVT   76 (369)
T ss_pred             cEEEEEecCCCC---cEEE-EeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCC--CCCCCcccccccceEEEEeCCCCC
Confidence            899999987765   6888 8999999999999999999999999999988754  346789999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc------C-----------------------------C-----CCCCcceeeEEeeeCCceEeC
Q 025278           81 KFKVGDEVYGDINEKAL------D-----------------------------H-----PKRNGSLAEYTAVEENLLALK  120 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~------~-----------------------------~-----~~~~g~~~~~~~~~~~~~~~l  120 (255)
                      ++++||||+..+...+.      .                             +     ....|+|+||++++...++++
T Consensus        77 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  156 (369)
T cd08301          77 DLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKI  156 (369)
T ss_pred             ccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEEC
Confidence            99999999875321000      0                             0     002478999999999999999


Q ss_pred             CCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCC
Q 025278          121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGAD  198 (255)
Q Consensus       121 p~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~  198 (255)
                      |+++++++++.+++++.|+|+++ +..++++|++|+|+| +|++|++++|+|+.+ |+ ++++++++++|+++++++|++
T Consensus       157 P~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~q~ak~~-G~~~vi~~~~~~~~~~~~~~~Ga~  234 (369)
T cd08301         157 NPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFG-LGAVGLAVAEGARIR-GASRIIGVDLNPSKFEQAKKFGVT  234 (369)
T ss_pred             CCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999998999999987 568899999999998 699999999999996 77 799999999999999999999


Q ss_pred             EEEcCCCc--cccc-----cCCCccEEEECCCCccceeeeeeccccCC-ceEEEEeeccC
Q 025278          199 LAIDYTKE--NIED-----LPEKFDVVFDAVGKMCISIVYQKCDKFQE-KSLINFGLFRQ  250 (255)
Q Consensus       199 ~v~~~~~~--~~~~-----~~~~~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~~G~~~~  250 (255)
                      .++++.+.  .+.+     ..+++|++||++|+......++.+++ ++ |+++.+|....
T Consensus       235 ~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~-~~~g~~v~~g~~~~  293 (369)
T cd08301         235 EFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVH-DGWGVTVLLGVPHK  293 (369)
T ss_pred             eEEcccccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhh-cCCCEEEEECcCCC
Confidence            99987642  2221     12379999999998766666777777 64 99999998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.3e-38  Score=276.25  Aligned_cols=239  Identities=21%  Similarity=0.281  Sum_probs=188.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCC-CCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATD-SPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~-~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||++++.++.  + ++++ +.|.|+|+++||+||+.+++||++|++.++|.++..+ ..+|.++|||++|+|+++|++ 
T Consensus         1 mka~~~~~~~~--~-l~~~-~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-   75 (355)
T cd08230           1 MKAIAVKPGKP--G-VRVV-DIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-   75 (355)
T ss_pred             CceeEecCCCC--C-CeEE-eCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-
Confidence            99999986443  2 6888 8999999999999999999999999999998754322 246789999999999999999 


Q ss_pred             CCCCCCCEEEeccCccc------cC--------------CC-CCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHH
Q 025278           80 KKFKVGDEVYGDINEKA------LD--------------HP-KRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATET  138 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~------~~--------------~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~t  138 (255)
                      ++|++||||+......+      ..              +. ..+|+|+||++++.+.++++|++++ + ++.+..++.+
T Consensus        76 ~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~-~a~~~~p~~~  153 (355)
T cd08230          76 SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-D-VGVLLEPLSV  153 (355)
T ss_pred             CCCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-c-ceeecchHHH
Confidence            99999999987532210      00              11 1368999999999999999999998 3 3444444444


Q ss_pred             HHHHHH-------hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec---ChhhHHHHHHcCCCEEEcCCCccc
Q 025278          139 AYEGLE-------RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS---STAKLDLLRSLGADLAIDYTKENI  208 (255)
Q Consensus       139 a~~~l~-------~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~---~~~~~~~~~~~g~~~v~~~~~~~~  208 (255)
                      +++++.       ....++|++|+|+| +|++|++++|+|+.+ |++++++++   +++|+++++++|++. +++.++++
T Consensus       154 ~~~a~~~~~~~~~~~~~~~g~~vlI~G-~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~~~~  230 (355)
T cd08230         154 VEKAIEQAEAVQKRLPTWNPRRALVLG-AGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGATY-VNSSKTPV  230 (355)
T ss_pred             HHHHHHHHhhhhhhcccCCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEE-ecCCccch
Confidence            444442       12367899999998 699999999999996 889999987   688999999999987 56655443


Q ss_pred             cc--cCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          209 ED--LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       209 ~~--~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+  ...++|+||||+|+......+++.++ ++|+++++|...+
T Consensus       231 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~-~~G~~v~~G~~~~  273 (355)
T cd08230         231 AEVKLVGEFDLIIEATGVPPLAFEALPALA-PNGVVILFGVPGG  273 (355)
T ss_pred             hhhhhcCCCCEEEECcCCHHHHHHHHHHcc-CCcEEEEEecCCC
Confidence            21  23579999999998766677788887 7899999998765

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=1.3e-38  Score=276.69  Aligned_cols=243  Identities=25%  Similarity=0.343  Sum_probs=195.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++.+...+.. ..+++. +.+.|+|+++||+||+.++|||++|++.+.|.++  ...+|.++|||++|+|+++|++++
T Consensus        11 ~~~~~~~~~~~~-~~l~~~-~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~--~~~~p~i~GhE~~G~V~~vG~~v~   86 (360)
T PLN02586         11 QKAFGWAARDPS-GVLSPF-HFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWG--FTRYPIVPGHEIVGIVTKLGKNVK   86 (360)
T ss_pred             hheeEEEecCCC-CCceEE-eecCCCCCCCeEEEEEEEecCChhhHhhhcCCcC--CCCCCccCCcceeEEEEEECCCCC
Confidence            555555544443 446777 7888999999999999999999999999988654  235689999999999999999999


Q ss_pred             CCCCCCEEEec-----cCcc----------cc-----------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccch
Q 025278           81 KFKVGDEVYGD-----INEK----------AL-----------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPL  134 (255)
Q Consensus        81 ~~~~Gd~V~~~-----~~~~----------~~-----------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~  134 (255)
                      ++++||||+..     |..+          +.           .+...+|+|+||+++|.+.++++|+++++++++.+++
T Consensus        87 ~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~  166 (360)
T PLN02586         87 KFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLC  166 (360)
T ss_pred             ccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhc
Confidence            99999999742     1110          00           0122369999999999999999999999999999999


Q ss_pred             hHHHHHHHHHh-cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH-HHHHHcCCCEEEcCCCc-ccccc
Q 025278          135 ATETAYEGLER-SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL-DLLRSLGADLAIDYTKE-NIEDL  211 (255)
Q Consensus       135 ~~~ta~~~l~~-~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~-~~~~~~g~~~v~~~~~~-~~~~~  211 (255)
                      +..|+|+++.. ..+++|++|+|.| +|++|++++|+|+.+ |+++++++.+++++ +.++++|+++++++.+. .+.+.
T Consensus       167 ~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~  244 (360)
T PLN02586        167 AGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAA  244 (360)
T ss_pred             chHHHHHHHHHhcccCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhh
Confidence            99999999864 5568999999988 799999999999996 89998887766654 55689999999987543 22333


Q ss_pred             CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 ~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+++|++||++|.......+.++++ ++|+++.+|...+
T Consensus       245 ~~~~D~vid~~g~~~~~~~~~~~l~-~~G~iv~vG~~~~  282 (360)
T PLN02586        245 IGTMDYIIDTVSAVHALGPLLGLLK-VNGKLITLGLPEK  282 (360)
T ss_pred             cCCCCEEEECCCCHHHHHHHHHHhc-CCcEEEEeCCCCC
Confidence            3479999999997766666788887 7899999997654

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.6e-39  Score=261.63  Aligned_cols=243  Identities=24%  Similarity=0.305  Sum_probs=211.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+|..+++++   |.++ |+..++|+..||+||+.++++|++|...+.|..+  ...+|.++|||++|+|+.+|+.|+
T Consensus         8 CKAAV~w~a~~P---L~IE-ei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~--~~~fP~IlGHEaaGIVESvGegV~   81 (375)
T KOG0022|consen    8 CKAAVAWEAGKP---LVIE-EIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDP--EGLFPVILGHEAAGIVESVGEGVT   81 (375)
T ss_pred             EeEeeeccCCCC---eeEE-EEEeCCCCCceEEEEEEEEeeccccceeecCCCc--cccCceEecccceeEEEEecCCcc
Confidence            689999999999   7888 8999999999999999999999999999999863  457899999999999999999999


Q ss_pred             CCCCCCEEEeccCccc---------------------------cC-------------CCCCCcceeeEEeeeCCceEeC
Q 025278           81 KFKVGDEVYGDINEKA---------------------------LD-------------HPKRNGSLAEYTAVEENLLALK  120 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~---------------------------~~-------------~~~~~g~~~~~~~~~~~~~~~l  120 (255)
                      ++++||+|+..+...+                           .+             ++-...+|+||.+++...+.+|
T Consensus        82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kI  161 (375)
T KOG0022|consen   82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKI  161 (375)
T ss_pred             ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEec
Confidence            9999999986533110                           00             0111248999999999999999


Q ss_pred             CCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE
Q 025278          121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL  199 (255)
Q Consensus       121 p~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~  199 (255)
                      ++..+++.++++.+.+.|+|-|. +.+++++|++|.|+| .|++|+++++-||+.+..++|.+|.+++|.+.++++|+..
T Consensus       162 d~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfG-LG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe  240 (375)
T KOG0022|consen  162 DPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFG-LGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE  240 (375)
T ss_pred             CCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEe-cchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce
Confidence            99999999999999999999987 789999999999999 9999999999999987789999999999999999999999


Q ss_pred             EEcCCCcc--ccc----c-CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          200 AIDYTKEN--IED----L-PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       200 v~~~~~~~--~~~----~-~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+|+.+..  ..+    + ..|+|.-|||+|....+..++...+.-.|+-+.+|....
T Consensus       241 ~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~  298 (375)
T KOG0022|consen  241 FINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAA  298 (375)
T ss_pred             ecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCC
Confidence            99987321  111    1 358999999999999999998888733499999998764

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=2.1e-38  Score=276.97  Aligned_cols=238  Identities=24%  Similarity=0.273  Sum_probs=198.6

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++.++++.   ++++ +.|.|+|+++||+||+.++|||++|++.+.+..     .+|.++|||++|+|+++|++++
T Consensus        13 mka~~~~~~~~~---~~~~-e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~-----~~p~i~GhE~~G~V~~vG~~v~   83 (378)
T PLN02827         13 CRAAVAWGAGEA---LVME-EVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA-----LFPRIFGHEASGIVESIGEGVT   83 (378)
T ss_pred             eEEEEEecCCCC---ceEE-EeecCCCCCCEEEEEEEEEecChhHHHHhcCCC-----CCCeeecccceEEEEEcCCCCc
Confidence            899999987654   6888 899999999999999999999999999887642     3578999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc--------------C--------------------C-----CCCCcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINEKAL--------------D--------------------H-----PKRNGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~--------------~--------------------~-----~~~~g~~~~~~~~~~~~~~~lp  121 (255)
                      ++++||||+......+.              .                    +     ....|+|+||+.+|...++++|
T Consensus        84 ~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP  163 (378)
T PLN02827         84 EFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVD  163 (378)
T ss_pred             ccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECC
Confidence            99999999876421000              0                    0     0024899999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCE
Q 025278          122 KNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADL  199 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~  199 (255)
                      +++++++++.+++++.++|+++ +..++++|++|+|+| +|++|++++|+|+++ |++ +++++++++|+++++++|+++
T Consensus       164 ~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~~lGa~~  241 (378)
T PLN02827        164 PLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFG-LGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAKTFGVTD  241 (378)
T ss_pred             CCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCcE
Confidence            9999999988888888899877 567899999999998 799999999999996 774 777788999999999999999


Q ss_pred             EEcCCCc--cccc----c-CCCccEEEECCCCccceeeeeeccccCC-ceEEEEeeccC
Q 025278          200 AIDYTKE--NIED----L-PEKFDVVFDAVGKMCISIVYQKCDKFQE-KSLINFGLFRQ  250 (255)
Q Consensus       200 v~~~~~~--~~~~----~-~~~~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~~G~~~~  250 (255)
                      ++++.+.  ++.+    . .+++|++||++|.......++.+++ ++ |+++.+|...+
T Consensus       242 ~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~-~g~G~iv~~G~~~~  299 (378)
T PLN02827        242 FINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCS-DGWGLTVTLGVPKA  299 (378)
T ss_pred             EEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhc-cCCCEEEEECCcCC
Confidence            9987642  2222    1 2379999999998766677788887 66 99999998754

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=1.4e-38  Score=274.60  Aligned_cols=234  Identities=20%  Similarity=0.166  Sum_probs=184.8

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCC--CCCCCcccccceEEEEEEeCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSAT--DSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~--~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |++++++|++.    +++ +.|.|+ +++||+|||.++|||++|+++++|.++..  ...+|.++|||++|+|++.|.+ 
T Consensus         4 ~~~~~~~~~~~----~~~-~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~-   76 (341)
T cd08237           4 QVYRLVRPKFF----EVT-YEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG-   76 (341)
T ss_pred             cceEEeccceE----EEe-ecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC-
Confidence            47888887764    888 889985 99999999999999999999999875321  1357999999999999998764 


Q ss_pred             CCCCCCCEEEeccCcccc---------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH
Q 025278           80 KKFKVGDEVYGDINEKAL---------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE  144 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~---------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~  144 (255)
                       +|++||||+..+...+.               .+...+|+|+||+++|.+.++++|+++++++++.+ .+..++|+++.
T Consensus        77 -~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~-~~~~~a~~a~~  154 (341)
T cd08237          77 -TYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFT-ELVSVGVHAIS  154 (341)
T ss_pred             -ccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhhhh-chHHHHHHHHH
Confidence             69999999875431110               11124699999999999999999999999877644 46777999884


Q ss_pred             h---cccCCCCEEEEEcCCchHHHHHHHHHHH-hcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEE
Q 025278          145 R---SAFSAGKSILVLGGAGGVGTMVIQLAKH-VFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFD  220 (255)
Q Consensus       145 ~---~~~~~g~~VlI~ga~g~~G~~a~~~a~~-~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid  220 (255)
                      .   ..+++|++|+|+| +|++|++++|+|++ +++.++++++++++|++++++++++..++.    ..+ ..++|+|||
T Consensus       155 ~~~~~~~~~g~~VlV~G-~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~----~~~-~~g~d~viD  228 (341)
T cd08237         155 RFEQIAHKDRNVIGVWG-DGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDD----IPE-DLAVDHAFE  228 (341)
T ss_pred             HHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhh----hhh-ccCCcEEEE
Confidence            3   4578999999999 79999999999986 445789999999999999988776654431    111 126999999


Q ss_pred             CCCC---ccceeeeeeccccCCceEEEEeeccCC
Q 025278          221 AVGK---MCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       221 ~~G~---~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      ++|+   ..+...++++++ ++|+++++|...++
T Consensus       229 ~~G~~~~~~~~~~~~~~l~-~~G~iv~~G~~~~~  261 (341)
T cd08237         229 CVGGRGSQSAINQIIDYIR-PQGTIGLMGVSEYP  261 (341)
T ss_pred             CCCCCccHHHHHHHHHhCc-CCcEEEEEeecCCC
Confidence            9995   345566777888 89999999986543

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=6.8e-38  Score=272.79  Aligned_cols=241  Identities=24%  Similarity=0.297  Sum_probs=201.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..+++.   ++++ +.|.|++.++||+||+.++++|++|++.+.|.++   ..+|.++|||++|+|+++|++++
T Consensus         3 ~ka~~~~~~~~~---~~~~-~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~---~~~p~i~G~e~~G~V~~vG~~v~   75 (365)
T cd08277           3 CKAAVAWEAGKP---LVIE-EIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA---TLFPVILGHEGAGIVESVGEGVT   75 (365)
T ss_pred             cEEEEEccCCCC---cEEE-EEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC---CCCCeecccceeEEEEeeCCCCc
Confidence            789999877654   6888 8999999999999999999999999999988653   45688999999999999999999


Q ss_pred             CCCCCCEEEeccCccc------cC--------------C------------------CCCCcceeeEEeeeCCceEeCCC
Q 025278           81 KFKVGDEVYGDINEKA------LD--------------H------------------PKRNGSLAEYTAVEENLLALKPK  122 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~------~~--------------~------------------~~~~g~~~~~~~~~~~~~~~lp~  122 (255)
                      ++++||||+..+...+      ..              +                  ....|+|+||+.++.+.++++|+
T Consensus        76 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~  155 (365)
T cd08277          76 NLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDP  155 (365)
T ss_pred             cCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCC
Confidence            9999999987532100      00              0                  01248999999999999999999


Q ss_pred             CCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEE
Q 025278          123 NLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLA  200 (255)
Q Consensus       123 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v  200 (255)
                      ++++++++.+++++.|||+++ +...+++|++|+|+| +|++|++++|+|+.+ |+ +|++++++++|+++++++|++++
T Consensus       156 ~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~~~~ga~~~  233 (365)
T cd08277         156 AAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFG-LGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKAKEFGATDF  233 (365)
T ss_pred             CCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCCcE
Confidence            999999999999999999987 568899999999998 799999999999996 77 68899999999999999999999


Q ss_pred             EcCCCcc--ccc-----cCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          201 IDYTKEN--IED-----LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       201 ~~~~~~~--~~~-----~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +++.+.+  +.+     ..+++|++|||+|+......+++.++..+|+++.+|...+
T Consensus       234 i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  290 (365)
T cd08277         234 INPKDSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPG  290 (365)
T ss_pred             eccccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCc
Confidence            9876432  111     1247999999999776666667777623599999998753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=4.2e-38  Score=268.04  Aligned_cols=231  Identities=16%  Similarity=0.219  Sum_probs=183.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecC-hHhHHHHcCCCCCCC-CCCCcccccceEEEEEEeCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALN-PIDFKRMLGAFSATD-SPLPTIPGYDVAGVVEKVGSQ   78 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~-~~D~~~~~g~~~~~~-~~~p~~~G~e~~G~V~~~G~~   78 (255)
                      |||+++.+++.    ++++ +.+.|+|+++||+||+.+++|| ++|++.++|.++... ..+|.++|||++|+|+++|++
T Consensus         2 ~ka~~~~~~~~----l~~~-e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~   76 (308)
T TIGR01202         2 TQAIVLSGPNQ----IELR-EVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPD   76 (308)
T ss_pred             ceEEEEeCCCe----EEEE-EecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCC
Confidence            79999987664    5888 8999999999999999999995 799999988765322 357999999999999999999


Q ss_pred             CCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEc
Q 025278           79 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLG  158 (255)
Q Consensus        79 v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~g  158 (255)
                      + ++++||||+..+..+........|+|+||+++|.+.++++|++++++. +.+. ...|||+++++.. .++++|+|+|
T Consensus        77 v-~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~~~-~~~~~vlV~G  152 (308)
T TIGR01202        77 T-GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAGAE-VKVLPDLIVG  152 (308)
T ss_pred             C-CCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHhcc-cCCCcEEEEC
Confidence            8 599999999743211111111369999999999999999999999864 4443 4678999997643 3688999998


Q ss_pred             CCchHHHHHHHHHHHhcCCcEE-EEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccceeeeeecccc
Q 025278          159 GAGGVGTMVIQLAKHVFGASKV-AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKF  237 (255)
Q Consensus       159 a~g~~G~~a~~~a~~~~g~~vi-~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~~~~~~~~~  237 (255)
                       +|++|++++|+|+++ |++++ +++.+++|++.++++   .++|+.+.    ..+++|+||||+|+......++++++ 
T Consensus       153 -~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~---~~i~~~~~----~~~g~Dvvid~~G~~~~~~~~~~~l~-  222 (308)
T TIGR01202       153 -HGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGY---EVLDPEKD----PRRDYRAIYDASGDPSLIDTLVRRLA-  222 (308)
T ss_pred             -CCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhc---cccChhhc----cCCCCCEEEECCCCHHHHHHHHHhhh-
Confidence             899999999999996 88754 566777787766553   45665332    23579999999999877777888888 


Q ss_pred             CCceEEEEeeccC
Q 025278          238 QEKSLINFGLFRQ  250 (255)
Q Consensus       238 ~~G~~v~~G~~~~  250 (255)
                      ++|+++++|.+.+
T Consensus       223 ~~G~iv~~G~~~~  235 (308)
T TIGR01202       223 KGGEIVLAGFYTE  235 (308)
T ss_pred             cCcEEEEEeecCC
Confidence            8999999998754

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1.4e-37  Score=268.39  Aligned_cols=242  Identities=29%  Similarity=0.376  Sum_probs=188.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCc-ccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPT-IPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~-~~G~e~~G~V~~~G~~v   79 (255)
                      ||++++..++..   .+++ +.+.|.+.++||+||+.++|||+||++.+++..+.  .+.|. ++|||++|+|+++| .+
T Consensus         1 m~a~~~~~~~~~---~~~~-~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~--~~~~~~i~GHE~~G~V~evG-~~   73 (350)
T COG1063           1 MKAAVVYVGGGD---VRLE-EPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPF--VPPGDIILGHEFVGEVVEVG-VV   73 (350)
T ss_pred             CceeEEEecCCc---cccc-cCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCC--CCCCCcccCccceEEEEEec-cc
Confidence            888888887765   2355 66667789999999999999999999999997542  23344 99999999999999 77


Q ss_pred             CCCCCCCEEEeccCcc--------------cc---------CCCCCCcceeeEEeeeCCceEe-CCCCCCHHhhhccchh
Q 025278           80 KKFKVGDEVYGDINEK--------------AL---------DHPKRNGSLAEYTAVEENLLAL-KPKNLSFVEAASLPLA  135 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~--------------~~---------~~~~~~g~~~~~~~~~~~~~~~-lp~~~~~~~aa~l~~~  135 (255)
                      +.+++||||+..+...              +.         .+...+|+|+||+.+|.+.++. +|+++ ..+++++..+
T Consensus        74 ~~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~ep  152 (350)
T COG1063          74 RGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEP  152 (350)
T ss_pred             cCCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcCh
Confidence            8899999998764311              11         0111479999999999765555 57887 4566667667


Q ss_pred             HHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCCEEEcCCCcccc----
Q 025278          136 TETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADLAIDYTKENIE----  209 (255)
Q Consensus       136 ~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~----  209 (255)
                      +.++|++. .....+++.+|+|.| +|++|++++++++.++..++++++.+++|++++++ .|++.+++...++..    
T Consensus       153 la~~~~~~a~~~~~~~~~~V~V~G-aGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~  231 (350)
T COG1063         153 LATAYHGHAERAAVRPGGTVVVVG-AGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEIL  231 (350)
T ss_pred             hhhhhhhhhhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHH
Confidence            77798774 455555666999999 99999999999999755778888999999999998 667777766543211    


Q ss_pred             ccC--CCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCC
Q 025278          210 DLP--EKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEV  252 (255)
Q Consensus       210 ~~~--~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~  252 (255)
                      +..  .++|++|||+|...+...++++.+ ++|+++++|.++++.
T Consensus       232 ~~t~g~g~D~vie~~G~~~~~~~ai~~~r-~gG~v~~vGv~~~~~  275 (350)
T COG1063         232 ELTGGRGADVVIEAVGSPPALDQALEALR-PGGTVVVVGVYGGED  275 (350)
T ss_pred             HHhCCCCCCEEEECCCCHHHHHHHHHHhc-CCCEEEEEeccCCcc
Confidence            112  379999999998887888899998 899999999998764

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=3.1e-37  Score=264.52  Aligned_cols=236  Identities=27%  Similarity=0.379  Sum_probs=197.2

Q ss_pred             CeEEEEcccCCCc--cceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCC
Q 025278            1 MKAWVYKEYGNSQ--SVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQ   78 (255)
Q Consensus         1 mka~v~~~~~~~~--~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~   78 (255)
                      |||+++++++.+.  +.++++ +.|.|+|+++||+||+.++++|++|++.+.|.++. ...+|.++|||++|+|+++|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~-~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~-~~~~p~v~G~e~~G~V~~vG~~   78 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLP-EPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGS-TKALPVPPGFEGSGTVVAAGGG   78 (324)
T ss_pred             CeEEEEeecCCCccccEEEec-ccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC-CCCCCcCCCcceEEEEEEECCC
Confidence            9999999888531  246788 78999999999999999999999999999887642 2356889999999999999999


Q ss_pred             CCC-CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEE
Q 025278           79 VKK-FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVL  157 (255)
Q Consensus        79 v~~-~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~  157 (255)
                      +.+ +++||+|++...        .+|+|+||+++|.+.++++|+++++++++.+++...|||..++.... ++++++|+
T Consensus        79 v~~~~~vGd~V~~~~~--------~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~-~~~~vlv~  149 (324)
T cd08291          79 PLAQSLIGKRVAFLAG--------SYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGMLETARE-EGAKAVVH  149 (324)
T ss_pred             ccccCCCCCEEEecCC--------CCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHHHhhcc-CCCcEEEE
Confidence            986 999999998642        14899999999999999999999999998888888899866655555 55566665


Q ss_pred             -cCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceee
Q 025278          158 -GGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIV  230 (255)
Q Consensus       158 -ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~  230 (255)
                       +++|++|++++|+|+.+ |+++++++++++|+++++++|+++++++...++.+.      .+++|++||++|+.... .
T Consensus       150 ~~g~g~vG~~a~q~a~~~-G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~~~~-~  227 (324)
T cd08291         150 TAAASALGRMLVRLCKAD-GIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGGLTG-Q  227 (324)
T ss_pred             ccCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCcHHHH-H
Confidence             77999999999999996 999999999999999999999999999876554321      24799999999976543 3


Q ss_pred             eeeccccCCceEEEEeeccC
Q 025278          231 YQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       231 ~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ....++ ++|+++.+|..++
T Consensus       228 ~~~~l~-~~G~~v~~g~~~~  246 (324)
T cd08291         228 ILLAMP-YGSTLYVYGYLSG  246 (324)
T ss_pred             HHHhhC-CCCEEEEEEecCC
Confidence            455566 7899999997654

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.8e-37  Score=269.38  Aligned_cols=243  Identities=24%  Similarity=0.333  Sum_probs=194.9

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      ||+.+...+.. ..+++. +.+.|+|+++||+||+.++|||++|++.+.|.++  ...+|.++|||++|+|+++|+++++
T Consensus         6 ~a~~~~~~~~~-~~l~~~-~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~--~~~~p~i~GhE~aG~Vv~vG~~v~~   81 (375)
T PLN02178          6 KAFGWAANDES-GVLSPF-HFSRRENGENDVTVKILFCGVCHSDLHTIKNHWG--FSRYPIIPGHEIVGIATKVGKNVTK   81 (375)
T ss_pred             eeEEEEEccCC-CCceEE-eecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCC--CCCCCcccCceeeEEEEEECCCCCc
Confidence            44555544544 446777 7888999999999999999999999999988653  2346889999999999999999999


Q ss_pred             CCCCCEEEec-----cCccc----------c-----------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchh
Q 025278           82 FKVGDEVYGD-----INEKA----------L-----------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLA  135 (255)
Q Consensus        82 ~~~Gd~V~~~-----~~~~~----------~-----------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~  135 (255)
                      +++||||...     |..+.          .           .+...+|+|+||+++|.+.++++|+++++++++.++++
T Consensus        82 ~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~  161 (375)
T PLN02178         82 FKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCA  161 (375)
T ss_pred             cCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhcc
Confidence            9999999742     21100          0           01223689999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc--cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh-HHHHHHcCCCEEEcCCCc-ccccc
Q 025278          136 TETAYEGLERSA--FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK-LDLLRSLGADLAIDYTKE-NIEDL  211 (255)
Q Consensus       136 ~~ta~~~l~~~~--~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~-~~~~~~~g~~~v~~~~~~-~~~~~  211 (255)
                      ..|+|+++....  .++|++|+|.| +|++|++++|+|+.+ |+++++++.++++ .++++++|+++++++.+. ...+.
T Consensus       162 ~~ta~~al~~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~  239 (375)
T PLN02178        162 GITVYSPMKYYGMTKESGKRLGVNG-LGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEA  239 (375)
T ss_pred             chHHHHHHHHhCCCCCCCCEEEEEc-ccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHh
Confidence            999999986543  46899999998 799999999999996 8999988876554 678889999999987542 12222


Q ss_pred             CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          212 PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       212 ~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      ..++|++|||+|.......+.++++ ++|+++.+|...++
T Consensus       240 ~~~~D~vid~~G~~~~~~~~~~~l~-~~G~iv~vG~~~~~  278 (375)
T PLN02178        240 VGTMDFIIDTVSAEHALLPLFSLLK-VSGKLVALGLPEKP  278 (375)
T ss_pred             hCCCcEEEECCCcHHHHHHHHHhhc-CCCEEEEEccCCCC
Confidence            3479999999998766677778887 78999999987543

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-37  Score=266.70  Aligned_cols=239  Identities=24%  Similarity=0.356  Sum_probs=195.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCC-CCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSL-REDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~-~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++++++.    ++++ +.|.|+| .++||+||+.++++|++|+..+....   ...+|.++|||++|+|+++|+++
T Consensus         1 Mka~~~~~~~~----~~~~-~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~---~~~~p~i~G~e~~G~V~~vG~~v   72 (347)
T PRK10309          1 MKSVVNDTDGI----VRVA-ESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG---AHYYPITLGHEFSGYVEAVGSGV   72 (347)
T ss_pred             CceEEEeCCCc----eEEE-ECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC---CCCCCcccccceEEEEEEeCCCC
Confidence            99999998775    4888 8999987 59999999999999999997543211   12357899999999999999999


Q ss_pred             CCCCCCCEEEeccCccc------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           80 KKFKVGDEVYGDINEKA------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      +++++||||+..+...+                  ..+....|+|+||+.++.+.++++|+++++++++.+. ++.++|+
T Consensus        73 ~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~  151 (347)
T PRK10309         73 DDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLH  151 (347)
T ss_pred             CCCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHH
Confidence            99999999988642111                  0112246999999999999999999999998888763 3445888


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCccccc---c--CCCc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIED---L--PEKF  215 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~--~~~~  215 (255)
                      +++...+++|++|+|+| +|++|++++|+|+.+ |++ +++++++++|++.++++|+++++++++.+..+   .  ..++
T Consensus       152 ~~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~  229 (347)
T PRK10309        152 AFHLAQGCEGKNVIIIG-AGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRF  229 (347)
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCC
Confidence            88778889999999998 799999999999996 887 67888999999999999999999876543221   1  2368


Q ss_pred             c-EEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          216 D-VVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       216 d-~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      | ++|||+|.......++++++ ++|+++++|.+.++
T Consensus       230 d~~v~d~~G~~~~~~~~~~~l~-~~G~iv~~G~~~~~  265 (347)
T PRK10309        230 DQLILETAGVPQTVELAIEIAG-PRAQLALVGTLHHD  265 (347)
T ss_pred             CeEEEECCCCHHHHHHHHHHhh-cCCEEEEEccCCCC
Confidence            8 99999998777777888888 89999999987653

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=1.9e-36  Score=259.19  Aligned_cols=235  Identities=25%  Similarity=0.346  Sum_probs=203.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++.+.++++ +.|.|.+.++||+||+.++++|++|+..+.|.++. ....|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~-~~~~p~~~G~e~~G~V~~~G~~v~   78 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIG-EVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGY-KPELPAIGGSEAVGVVDAVGEGVK   78 (324)
T ss_pred             CeeEEEccCCChhHeEEEe-ecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC-CCCCCCCCCcceEEEEEEeCCCCC
Confidence            9999999887643457888 89999999999999999999999999999887642 234578999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGA  160 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~  160 (255)
                      ++++||+|++..         ..|+|++|+.++...++++|+++++++++.+++...++|++++..++++|++|+|+|++
T Consensus        79 ~~~~Gd~V~~~~---------~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~~  149 (324)
T cd08292          79 GLQVGQRVAVAP---------VHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDFLGVKPGQWLIQNAAG  149 (324)
T ss_pred             CCCCCCEEEecc---------CCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHhhCCCCCCEEEEcccc
Confidence            999999999864         25899999999999999999999999999988888899999877889999999999989


Q ss_pred             chHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CCCccEEEECCCCccceeeeeec
Q 025278          161 GGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PEKFDVVFDAVGKMCISIVYQKC  234 (255)
Q Consensus       161 g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~~  234 (255)
                      |.+|++++++|+++ |+++++++.++++.+.++++|+++++++.+.++.+    .  .+++|++||++|+.. ...+.++
T Consensus       150 g~ig~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~-~~~~~~~  227 (324)
T cd08292         150 GAVGKLVAMLAAAR-GINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGGKL-AGELLSL  227 (324)
T ss_pred             cHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHh
Confidence            99999999999996 99999999999999988889999999887654432    1  247999999999864 4555677


Q ss_pred             cccCCceEEEEeecc
Q 025278          235 DKFQEKSLINFGLFR  249 (255)
Q Consensus       235 ~~~~~G~~v~~G~~~  249 (255)
                      ++ .+|+++.+|...
T Consensus       228 l~-~~g~~v~~g~~~  241 (324)
T cd08292         228 LG-EGGTLVSFGSMS  241 (324)
T ss_pred             hc-CCcEEEEEecCC
Confidence            76 789999999753

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=6.9e-37  Score=264.94  Aligned_cols=238  Identities=22%  Similarity=0.370  Sum_probs=197.3

Q ss_pred             EEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q 025278            4 WVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFK   83 (255)
Q Consensus         4 ~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~   83 (255)
                      ++++++++.   ++++ +.|.|+|+++||+||+.++++|++|++.+.+.+. ....+|.++|||++|+|+++|+++..+ 
T Consensus         2 ~~~~~~g~~---~~~~-~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~-~~~~~p~i~GhE~~G~V~~vG~~v~~~-   75 (349)
T TIGR03201         2 WMMTEPGKP---MVKT-RVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVR-TNHALPLALGHEISGRVIQAGAGAASW-   75 (349)
T ss_pred             ceEecCCCC---ceEE-eccCCCCCCCeEEEEEEEEeecccchHHHcCCCC-ccCCCCeeccccceEEEEEeCCCcCCC-
Confidence            567777764   5888 8999999999999999999999999998754322 123568899999999999999999877 


Q ss_pred             CCCEEEeccCccc------------------cCCCCCCcceeeEEeeeCCceEeCCC------CCCHHhhhccchhHHHH
Q 025278           84 VGDEVYGDINEKA------------------LDHPKRNGSLAEYTAVEENLLALKPK------NLSFVEAASLPLATETA  139 (255)
Q Consensus        84 ~Gd~V~~~~~~~~------------------~~~~~~~g~~~~~~~~~~~~~~~lp~------~~~~~~aa~l~~~~~ta  139 (255)
                      +||||+..+...+                  ..+....|+|+||+++|.+.++++|+      ++++++++.+++++.++
T Consensus        76 ~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta  155 (349)
T TIGR03201        76 IGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTP  155 (349)
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHH
Confidence            9999987422110                  11222469999999999999999999      89998888889999999


Q ss_pred             HHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc---ccc----c-
Q 025278          140 YEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN---IED----L-  211 (255)
Q Consensus       140 ~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~----~-  211 (255)
                      |+++....+++|++|+|+|+ |++|++++|+|+++ |+++++++++++|+++++++|+++++++.+.+   +.+    . 
T Consensus       156 ~~a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t  233 (349)
T TIGR03201       156 YQAAVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFA  233 (349)
T ss_pred             HHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhc
Confidence            99998888999999999996 99999999999996 88999999999999999999999999876542   211    1 


Q ss_pred             -CCCcc----EEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 -PEKFD----VVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 -~~~~d----~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                       ..++|    ++|||+|+......+.++++ ++|+++++|...+
T Consensus       234 ~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~-~~G~iv~~G~~~~  276 (349)
T TIGR03201       234 KARGLRSTGWKIFECSGSKPGQESALSLLS-HGGTLVVVGYTMA  276 (349)
T ss_pred             ccCCCCCCcCEEEECCCChHHHHHHHHHHh-cCCeEEEECcCCC
Confidence             13565    89999998877767778887 7899999998764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.2e-36  Score=264.12  Aligned_cols=241  Identities=26%  Similarity=0.358  Sum_probs=198.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |+|+++.++++.   ++++ +++.|+|+++||+||+.+++||++|++.+.|.++.  ..+|.++|||++|+|+++|++++
T Consensus        10 ~~~~~~~~~~~~---~~~~-~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~--~~~p~i~G~E~~G~Vv~vG~~v~   83 (357)
T PLN02514         10 TTGWAARDPSGH---LSPY-TYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM--SNYPMVPGHEVVGEVVEVGSDVS   83 (357)
T ss_pred             EEEEEEecCCCC---ceEE-eecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc--CCCCccCCceeeEEEEEECCCcc
Confidence            579999999876   6888 79999999999999999999999999999886532  34688999999999999999999


Q ss_pred             CCCCCCEEEec-----cCccc----------c-----------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccch
Q 025278           81 KFKVGDEVYGD-----INEKA----------L-----------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPL  134 (255)
Q Consensus        81 ~~~~Gd~V~~~-----~~~~~----------~-----------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~  134 (255)
                      ++++||+|+..     |..+.          .           .+....|+|+||+++|...++++|+++++++++.+++
T Consensus        84 ~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  163 (357)
T PLN02514         84 KFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLC  163 (357)
T ss_pred             cccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhh
Confidence            99999999742     11100          0           0112369999999999999999999999999999999


Q ss_pred             hHHHHHHHHHh-cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEEcCCCcc-cccc
Q 025278          135 ATETAYEGLER-SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAIDYTKEN-IEDL  211 (255)
Q Consensus       135 ~~~ta~~~l~~-~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~~~~~~~-~~~~  211 (255)
                      ++.|||+++.. ...++|++|+|+| +|++|++++|+|+.+ |+++++++.+++++..+ +++|++.++++.+.. +.+.
T Consensus       164 ~~~ta~~al~~~~~~~~g~~vlV~G-~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~  241 (357)
T PLN02514        164 AGVTVYSPLSHFGLKQSGLRGGILG-LGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEA  241 (357)
T ss_pred             hHHHHHHHHHHcccCCCCCeEEEEc-ccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHh
Confidence            99999999965 4457999999997 799999999999996 88999888888777555 679999887764422 2223


Q ss_pred             CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 ~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ..++|++|||+|.......+.++++ ++|+++.+|...+
T Consensus       242 ~~~~D~vid~~g~~~~~~~~~~~l~-~~G~iv~~G~~~~  279 (357)
T PLN02514        242 ADSLDYIIDTVPVFHPLEPYLSLLK-LDGKLILMGVINT  279 (357)
T ss_pred             cCCCcEEEECCCchHHHHHHHHHhc-cCCEEEEECCCCC
Confidence            3579999999997766667788887 7899999998754

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=6.6e-37  Score=245.62  Aligned_cols=236  Identities=29%  Similarity=0.435  Sum_probs=206.2

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      |+++|.++|++.++++++ ++++|+....+|+||.+++.||++|++.++|.||. ++++|.+-|.|++|+|+.+|+++++
T Consensus        21 kalvY~~hgdP~kVlql~-~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpv-rP~~PAVgGnEGv~eVv~vGs~vkg   98 (354)
T KOG0025|consen   21 KALVYSEHGDPAKVLQLK-NLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPV-RPELPAVGGNEGVGEVVAVGSNVKG   98 (354)
T ss_pred             ceeeecccCCchhhheee-cccCCCCCCCceeeeeeecCCChHHhhhhccccCC-CCCCCcccCCcceEEEEEecCCcCc
Confidence            799999999999999999 89999888888999999999999999999999984 4677999999999999999999999


Q ss_pred             CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcCC
Q 025278           82 FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGGA  160 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga~  160 (255)
                      |++||+|+....        ..|+|++|.+.+++.++++++.++++.||.+..+.+|||..|. ..++++||+|+-.||.
T Consensus        99 fk~Gd~VIp~~a--------~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNgan  170 (354)
T KOG0025|consen   99 FKPGDWVIPLSA--------NLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGAN  170 (354)
T ss_pred             cCCCCeEeecCC--------CCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcc
Confidence            999999998763        4699999999999999999999999999999999999999995 5789999999999999


Q ss_pred             chHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEEEcCCCccccc------cCCCccEEEECCCCccceee
Q 025278          161 GGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLAIDYTKENIED------LPEKFDVVFDAVGKMCISIV  230 (255)
Q Consensus       161 g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v~~~~~~~~~~------~~~~~d~vid~~G~~~~~~~  230 (255)
                      +++|++.+|+|+++ |.+.+-++|+....+.+    +.+||++||...+..-.+      ....+.+.|||+|+..+...
T Consensus       171 S~VG~~ViQlaka~-GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~k~~~~~~~prLalNcVGGksa~~i  249 (354)
T KOG0025|consen  171 SGVGQAVIQLAKAL-GIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMKKFKGDNPRPRLALNCVGGKSATEI  249 (354)
T ss_pred             cHHHHHHHHHHHHh-CcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhhhhhccCCCceEEEeccCchhHHHH
Confidence            99999999999996 99999998877665544    679999998653322111      13468999999999887665


Q ss_pred             eeeccccCCceEEEEeeccC
Q 025278          231 YQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       231 ~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +.. +. .+|+++.||.++.
T Consensus       250 ar~-L~-~GgtmvTYGGMSk  267 (354)
T KOG0025|consen  250 ARY-LE-RGGTMVTYGGMSK  267 (354)
T ss_pred             HHH-Hh-cCceEEEecCccC
Confidence            544 43 6899999999986

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=2.9e-36  Score=261.18  Aligned_cols=241  Identities=29%  Similarity=0.401  Sum_probs=198.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCC-C--CC------CCCCCCcccccceEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGA-F--SA------TDSPLPTIPGYDVAGV   71 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~-~--~~------~~~~~p~~~G~e~~G~   71 (255)
                      |||+++.++++    ++++ +++.|+|.++||+||+.++++|++|+..+.+. +  +.      ....+|.++|||++|+
T Consensus         1 mka~~~~~~~~----l~~~-~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~   75 (351)
T cd08233           1 MKAARYHGRKD----IRVE-EVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGV   75 (351)
T ss_pred             CceEEEecCCc----eEEE-eccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEE
Confidence            99999998765    4888 89999999999999999999999999876542 1  10      1123688999999999


Q ss_pred             EEEeCCCCCCCCCCCEEEeccCcccc------------------CCC-CCCcceeeEEeeeCCceEeCCCCCCHHhhhcc
Q 025278           72 VEKVGSQVKKFKVGDEVYGDINEKAL------------------DHP-KRNGSLAEYTAVEENLLALKPKNLSFVEAASL  132 (255)
Q Consensus        72 V~~~G~~v~~~~~Gd~V~~~~~~~~~------------------~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l  132 (255)
                      |+++|++++++++||+|+......+.                  .+. ...|+|++|+.++...++++|++++.++++.+
T Consensus        76 V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~  155 (351)
T cd08233          76 VVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV  155 (351)
T ss_pred             EEEeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc
Confidence            99999999999999999874321110                  001 12689999999999999999999999888765


Q ss_pred             chhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCcccccc
Q 025278          133 PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL  211 (255)
Q Consensus       133 ~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  211 (255)
                       .+..|||+++...++++|++|+|+| +|++|++++|+|+.+ |+ +++++++++++.++++++|++.++++.+.++.+.
T Consensus       156 -~~~~ta~~~l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~  232 (351)
T cd08233         156 -EPLAVAWHAVRRSGFKPGDTALVLG-AGPIGLLTILALKAA-GASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAE  232 (351)
T ss_pred             -cHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHH
Confidence             5777899999878899999999998 699999999999996 88 7888899999999999999999999876654321


Q ss_pred             ------CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 ------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 ------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                            .+++|++||++|.......+.+.++ .+|+++.+|..+.
T Consensus       233 l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  276 (351)
T cd08233         233 VRKLTGGGGVDVSFDCAGVQATLDTAIDALR-PRGTAVNVAIWEK  276 (351)
T ss_pred             HHHHhCCCCCCEEEECCCCHHHHHHHHHhcc-CCCEEEEEccCCC
Confidence                  2369999999997666666677777 7899999998763

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=6.8e-36  Score=257.14  Aligned_cols=241  Identities=29%  Similarity=0.376  Sum_probs=203.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++..   ++++ +.|.|++.++||+||+.++++|++|+..+.|.++.  ...|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~---~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~p~~~g~e~~G~v~~vG~~v~   74 (333)
T cd08296           1 YKAVQVTEPGGP---LELV-ERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG--LSYPRVPGHEVVGRIDAVGEGVS   74 (333)
T ss_pred             CeEEEEccCCCC---ceEE-eccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC--CCCCcccCcceeEEEEEECCCCc
Confidence            999999988543   5888 89999999999999999999999999999887642  35588999999999999999999


Q ss_pred             CCCCCCEEEeccC-----cc--------------ccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDIN-----EK--------------ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~~-----~~--------------~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      ++++||+|+..+.     .+              ...+....|+|++|+.++...++++|+++++++++.++++..++|+
T Consensus        75 ~~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  154 (333)
T cd08296          75 RWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFN  154 (333)
T ss_pred             cCCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHH
Confidence            9999999986321     00              0011223589999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc---CCCccEE
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL---PEKFDVV  218 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~---~~~~d~v  218 (255)
                      +++...++++++|+|+| +|++|++++++|+++ |.++++++++++++++++++|+++++++...++.+.   .+++|++
T Consensus       155 ~~~~~~~~~~~~vlV~g-~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~v  232 (333)
T cd08296         155 ALRNSGAKPGDLVAVQG-IGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLI  232 (333)
T ss_pred             HHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEE
Confidence            99777899999999999 899999999999996 999999999999999999999999998876543321   2479999


Q ss_pred             EECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          219 FDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       219 id~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ||++|.......+.+.++ .+|+++.+|....
T Consensus       233 i~~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  263 (333)
T cd08296         233 LATAPNAKAISALVGGLA-PRGKLLILGAAGE  263 (333)
T ss_pred             EECCCchHHHHHHHHHcc-cCCEEEEEecCCC
Confidence            999986666666677777 7899999998653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=2.2e-35  Score=257.58  Aligned_cols=241  Identities=25%  Similarity=0.317  Sum_probs=199.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++++..+++.   ++++ +.|.|+|.++||+||+.++++|++|++.+.|.++   ..+|.++|||++|+|+++|++++
T Consensus         8 ~~a~~~~~~~~~---~~l~-~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~---~~~p~v~G~e~~G~V~~vG~~v~   80 (373)
T cd08299           8 CKAAVLWEPKKP---FSIE-EIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV---TPFPVILGHEAAGIVESVGEGVT   80 (373)
T ss_pred             eEEEEEecCCCC---cEEE-EeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC---CCCCccccccceEEEEEeCCCCc
Confidence            788888876654   6888 8999999999999999999999999999988752   35688999999999999999999


Q ss_pred             CCCCCCEEEeccCc--------------cccC-------------------------CCCCCcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINE--------------KALD-------------------------HPKRNGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~--------------~~~~-------------------------~~~~~g~~~~~~~~~~~~~~~lp  121 (255)
                      .+++||+|+..+..              .+..                         +....|+|+||++++.+.++++|
T Consensus        81 ~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP  160 (373)
T cd08299          81 TVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKID  160 (373)
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCC
Confidence            99999999876210              0000                         00025899999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCE
Q 025278          122 KNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADL  199 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~  199 (255)
                      +++++++++.+++++.++|+++ ...++++|++|+|+| +|++|++++++|+++ |+ +|++++++++|++.++++|+++
T Consensus       161 ~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~a~~lGa~~  238 (373)
T cd08299         161 AAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSAIMGCKAA-GASRIIAVDINKDKFAKAKELGATE  238 (373)
T ss_pred             CCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCce
Confidence            9999999999999999999987 568899999999997 799999999999996 87 7999999999999999999999


Q ss_pred             EEcCCCcc--ccc-----cCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          200 AIDYTKEN--IED-----LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       200 v~~~~~~~--~~~-----~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +++..+.+  +.+     ..+++|++|||+|+......+....+..+|+++.+|....
T Consensus       239 ~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~  296 (373)
T cd08299         239 CINPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPS  296 (373)
T ss_pred             EecccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCC
Confidence            99875432  211     1247999999999866555555544325799999997653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=3.9e-35  Score=254.15  Aligned_cols=240  Identities=27%  Similarity=0.352  Sum_probs=202.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++.++++.    +++ +.+.|++.++||+||+.++++|++|++.+.+.++.  ...|.++|||++|+|+++|++++
T Consensus         1 mka~~~~~~~~~----~l~-~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~--~~~~~~~G~e~~G~V~~vG~~v~   73 (351)
T cd08285           1 MKAFAMLGIGKV----GWI-EKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG--ERHGMILGHEAVGVVEEVGSEVK   73 (351)
T ss_pred             CceEEEccCCcc----EEE-ECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC--CCCCcccCcceEEEEEEecCCcC
Confidence            999999998865    787 78889999999999999999999999988876532  35588999999999999999999


Q ss_pred             CCCCCCEEEeccCccc---------------------cCCCCCCcceeeEEeeeCC--ceEeCCCCCCHHhhhccchhHH
Q 025278           81 KFKVGDEVYGDINEKA---------------------LDHPKRNGSLAEYTAVEEN--LLALKPKNLSFVEAASLPLATE  137 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~---------------------~~~~~~~g~~~~~~~~~~~--~~~~lp~~~~~~~aa~l~~~~~  137 (255)
                      ++++||+|++.+...+                     ..+....|+|+||++++.+  .++++|+++++++++.++..+.
T Consensus        74 ~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~  153 (351)
T cd08285          74 DFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMS  153 (351)
T ss_pred             ccCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchh
Confidence            9999999997431000                     0011236899999999974  8999999999999999988999


Q ss_pred             HHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c-
Q 025278          138 TAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L-  211 (255)
Q Consensus       138 ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~-  211 (255)
                      |+|++++...+++|++|+|+| +|++|++++|+|+.+ |. .+++++++++|.+.++++|+++++++.+.++.+    . 
T Consensus       154 ta~~~~~~~~~~~g~~vlI~g-~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~  231 (351)
T cd08285         154 TGFHGAELANIKLGDTVAVFG-IGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLT  231 (351)
T ss_pred             hHHHHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHh
Confidence            999998888899999999997 799999999999996 77 477888999999999999999999886654322    1 


Q ss_pred             -CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 -PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 -~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                       .+++|++||++|+......+.++++ ++|+++.+|....
T Consensus       232 ~~~~~d~vld~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  270 (351)
T cd08285         232 GGKGVDAVIIAGGGQDTFEQALKVLK-PGGTISNVNYYGE  270 (351)
T ss_pred             CCCCCcEEEECCCCHHHHHHHHHHhh-cCCEEEEecccCC
Confidence             2479999999998766667777777 7899999998764

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=1.7e-35  Score=261.39  Aligned_cols=241  Identities=26%  Similarity=0.340  Sum_probs=187.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHH-cCCCCC----CCCCCCcccccceEEEEEEe
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRM-LGAFSA----TDSPLPTIPGYDVAGVVEKV   75 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~-~g~~~~----~~~~~p~~~G~e~~G~V~~~   75 (255)
                      |||+++.++++    ++++ +.|.|+|+++||+||+.++|||++|++.+ .|..+.    ...++|.++|||++|+|+++
T Consensus         3 ~~a~~~~~~~~----l~~~-e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~v   77 (410)
T cd08238           3 TKAWRMYGKGD----LRLE-KFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKV   77 (410)
T ss_pred             cEEEEEEcCCc----eEEE-ecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEe
Confidence            78999988775    4888 89999999999999999999999999976 454211    11246889999999999999


Q ss_pred             CCCCC-CCCCCCEEEeccCcccc-------CCCCCCcceeeEEeeeCC----ceEeCCCCCCHHhhhcc-chhH-HHHHH
Q 025278           76 GSQVK-KFKVGDEVYGDINEKAL-------DHPKRNGSLAEYTAVEEN----LLALKPKNLSFVEAASL-PLAT-ETAYE  141 (255)
Q Consensus        76 G~~v~-~~~~Gd~V~~~~~~~~~-------~~~~~~g~~~~~~~~~~~----~~~~lp~~~~~~~aa~l-~~~~-~ta~~  141 (255)
                      |++++ ++++||||+..+...+.       .+...+|+|+||++++.+    .++++|+++++++++.+ ++++ .++++
T Consensus        78 G~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~  157 (410)
T cd08238          78 GKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYT  157 (410)
T ss_pred             CCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhh
Confidence            99998 69999999886432111       122346999999999987    68999999999888765 4332 12343


Q ss_pred             HH---------HhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-C-CcEEEEecChhhHHHHHHc--------CCC-EEE
Q 025278          142 GL---------ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-G-ASKVAATSSTAKLDLLRSL--------GAD-LAI  201 (255)
Q Consensus       142 ~l---------~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g-~~vi~~~~~~~~~~~~~~~--------g~~-~v~  201 (255)
                      ++         ++.++++|++|+|+|++|++|++++|+|++++ | .+|++++++++|++.++++        |++ .++
T Consensus       158 a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i  237 (410)
T cd08238         158 ANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYV  237 (410)
T ss_pred             hcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEE
Confidence            32         34678999999999989999999999999862 2 3799999999999999987        766 567


Q ss_pred             cCCC-ccccc----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEee
Q 025278          202 DYTK-ENIED----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       202 ~~~~-~~~~~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      ++.+ .++.+    .  .+++|++||++|.......+.++++ ++|+++.++.
T Consensus       238 ~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~-~~G~~v~~~g  289 (410)
T cd08238         238 NPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLA-PDGCLNFFAG  289 (410)
T ss_pred             CCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhc-cCCeEEEEEc
Confidence            7653 23222    1  2479999999998777777788887 6788877654

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=5.7e-35  Score=254.01  Aligned_cols=239  Identities=28%  Similarity=0.357  Sum_probs=198.5

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      ||+++.++++.   ++++ +.+.|+|.++||+||+.++++|++|+....|.++.  ..+|.++|||++|+|+++|+++++
T Consensus         2 ka~~~~~~~~~---l~~~-~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~   75 (361)
T cd08231           2 RAAVLTGPGKP---LEIR-EVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR--VPLPIILGHEGVGRVVALGGGVTT   75 (361)
T ss_pred             eEEEEcCCCCC---CEEE-eccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC--CCCCcccccCCceEEEEeCCCccc
Confidence            89999998844   6888 89999999999999999999999999999887642  456889999999999999999986


Q ss_pred             ------CCCCCEEEeccCccc------------------cCC-------CCCCcceeeEEeeeCC-ceEeCCCCCCHHhh
Q 025278           82 ------FKVGDEVYGDINEKA------------------LDH-------PKRNGSLAEYTAVEEN-LLALKPKNLSFVEA  129 (255)
Q Consensus        82 ------~~~Gd~V~~~~~~~~------------------~~~-------~~~~g~~~~~~~~~~~-~~~~lp~~~~~~~a  129 (255)
                            +++||+|+......+                  ..+       ....|+|+||+.++.+ .++++|++++.+.+
T Consensus        76 ~~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~a  155 (361)
T cd08231          76 DVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVA  155 (361)
T ss_pred             cccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHH
Confidence                  999999988632100                  000       1135899999999986 79999999998888


Q ss_pred             hccchhHHHHHHHHHhc-ccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCcc
Q 025278          130 ASLPLATETAYEGLERS-AFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKEN  207 (255)
Q Consensus       130 a~l~~~~~ta~~~l~~~-~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~  207 (255)
                      +.++++++|||+++... ..++|++|||+| +|++|++++++|+.+ |+ ++++++++++|.++++++|++.++++++.+
T Consensus       156 a~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~  233 (361)
T cd08231         156 APANCALATVLAALDRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREFGADATIDIDELP  233 (361)
T ss_pred             HHhcCHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccc
Confidence            88889999999999654 455999999998 799999999999996 88 899999999999999999999998876543


Q ss_pred             cc-------cc--CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          208 IE-------DL--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       208 ~~-------~~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ..       +.  .+++|++||++|+......+.+.++ .+|+++.+|...
T Consensus       234 ~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~-~~G~~v~~g~~~  283 (361)
T cd08231         234 DPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLR-RGGTYVLVGSVA  283 (361)
T ss_pred             cHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhc-cCCEEEEEcCCC
Confidence            22       11  2479999999997655556667776 789999999764

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=3.3e-35  Score=253.32  Aligned_cols=240  Identities=22%  Similarity=0.265  Sum_probs=196.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.    ++++ +.+.|+|.++|++||+.++++|++|++.+.|.++.  .++|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~----~~~~-~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~   73 (339)
T PRK10083          1 MKSIVIEKPNS----LAIE-ERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF--AKYPRVIGHEFFGVIDAVGEGVD   73 (339)
T ss_pred             CeEEEEecCCe----eEEE-eccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc--CCCCcccccceEEEEEEECCCCc
Confidence            99999998775    4888 89999999999999999999999999999887642  25689999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc------C------------CCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           81 KFKVGDEVYGDINEKAL------D------------HPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~------~------------~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      .+++||+|+..+...+.      .            +....|+|+||+.++...++++|++++++.++ +..++.++|++
T Consensus        74 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~  152 (339)
T PRK10083         74 AARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAANV  152 (339)
T ss_pred             cCCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHHH
Confidence            99999999854221110      0            11235899999999999999999999987766 44567778876


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCccccccC----CCccE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIEDLP----EKFDV  217 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~----~~~d~  217 (255)
                      ++..++++|++|+|+| +|++|++++|+|+.+.|++ +++++++++|.+.++++|++.++++.+.++.+..    .++|+
T Consensus       153 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~  231 (339)
T PRK10083        153 TGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL  231 (339)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence            7788899999999999 8999999999999633775 6667889999999999999999988764433321    24679


Q ss_pred             EEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          218 VFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       218 vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +||++|+......+.+.++ .+|+++.+|....
T Consensus       232 vid~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  263 (339)
T PRK10083        232 IIDAACHPSILEEAVTLAS-PAARIVLMGFSSE  263 (339)
T ss_pred             EEECCCCHHHHHHHHHHhh-cCCEEEEEccCCC
Confidence            9999997666666777777 7899999998653

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=1.1e-34  Score=250.02  Aligned_cols=242  Identities=31%  Similarity=0.400  Sum_probs=202.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC-CCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA-TDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||++++++++.   ++++ +.+.|++.++||+||+.++++|++|+....|.++. ....+|.++|||++|+|+++|+++
T Consensus         1 ~ka~~~~~~~~~---~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v   76 (340)
T cd05284           1 MKAARLYEYGKP---LRLE-DVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGV   76 (340)
T ss_pred             CeeeEeccCCCC---ceEE-eCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCC
Confidence            899999988654   6787 78889999999999999999999999998887643 334568899999999999999999


Q ss_pred             CCCCCCCEEEeccCcc------------------ccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           80 KKFKVGDEVYGDINEK------------------ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~------------------~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      ..+++||+|++.....                  ...+....|+|++|+.++.+.++++|+++++++++.+++++.|||+
T Consensus        77 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~  156 (340)
T cd05284          77 DGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYH  156 (340)
T ss_pred             CcCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHH
Confidence            9999999999864210                  0112234689999999999999999999999999999999999999


Q ss_pred             HHHh--cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CC
Q 025278          142 GLER--SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PE  213 (255)
Q Consensus       142 ~l~~--~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~  213 (255)
                      ++..  ..+.++++|+|+| +|++|++++++|+.+++.+++++++++++.+.++++|+++++++++. +.+    .  ..
T Consensus       157 ~l~~~~~~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~i~~~~~~~  234 (340)
T cd05284         157 AVKKALPYLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDD-VVEEVRELTGGR  234 (340)
T ss_pred             HHHHhcccCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCcc-HHHHHHHHhCCC
Confidence            9954  4688899999999 67799999999999733899999999999999999999999988764 222    1  23


Q ss_pred             CccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          214 KFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       214 ~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ++|+++|++|+......+.++++ .+|+++.+|..+
T Consensus       235 ~~dvvld~~g~~~~~~~~~~~l~-~~g~~i~~g~~~  269 (340)
T cd05284         235 GADAVIDFVGSDETLALAAKLLA-KGGRYVIVGYGG  269 (340)
T ss_pred             CCCEEEEcCCCHHHHHHHHHHhh-cCCEEEEEcCCC
Confidence            79999999997555566677776 789999999765

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=7e-35  Score=251.86  Aligned_cols=220  Identities=27%  Similarity=0.334  Sum_probs=179.8

Q ss_pred             cceEEeecccCCCCC-CCeEEEEEeEeecChHhHHHHcCCCC-CCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEec
Q 025278           14 SVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLGAFS-ATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGD   91 (255)
Q Consensus        14 ~~l~~~~~~~~p~~~-~~eV~V~v~~~~i~~~D~~~~~g~~~-~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~   91 (255)
                      +.++++ +.+.|+|. ++||+|||.++|||+.|......... ....++|.++|||++|+|+++|++++++++||||++.
T Consensus        21 ~~~~~~-~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   99 (345)
T cd08293          21 ENFRVE-ECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF   99 (345)
T ss_pred             cceEEE-eccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec
Confidence            568888 89999874 99999999999999998643321110 0123467889999999999999999999999999874


Q ss_pred             cCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHH----hhhccchhHHHHHHHH-HhcccCCC--CEEEEEcCCchHH
Q 025278           92 INEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFV----EAASLPLATETAYEGL-ERSAFSAG--KSILVLGGAGGVG  164 (255)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~----~aa~l~~~~~ta~~~l-~~~~~~~g--~~VlI~ga~g~~G  164 (255)
                      .           ++|+||++++.+.++++|+++++.    .++++++++.|||+++ +..++++|  ++|+|+|++|++|
T Consensus       100 ~-----------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG  168 (345)
T cd08293         100 N-----------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACG  168 (345)
T ss_pred             C-----------CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHH
Confidence            2           579999999999999999986432    2456678899999998 45678776  9999999889999


Q ss_pred             HHHHHHHHHhcCC-cEEEEecChhhHHHHHH-cCCCEEEcCCCcccccc-----CCCccEEEECCCCccceeeeeecccc
Q 025278          165 TMVIQLAKHVFGA-SKVAATSSTAKLDLLRS-LGADLAIDYTKENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKF  237 (255)
Q Consensus       165 ~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~  237 (255)
                      ++++|+|+++ |+ +|++++++++|.+++++ +|+++++++.+.++.+.     .+++|++||++|+.. ...+..+++ 
T Consensus       169 ~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~~~-~~~~~~~l~-  245 (345)
T cd08293         169 SLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGGEI-SDTVISQMN-  245 (345)
T ss_pred             HHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCcHH-HHHHHHHhc-
Confidence            9999999996 88 79999999999999876 99999999876554321     258999999999865 455677777 


Q ss_pred             CCceEEEEeec
Q 025278          238 QEKSLINFGLF  248 (255)
Q Consensus       238 ~~G~~v~~G~~  248 (255)
                      ++|+++.+|..
T Consensus       246 ~~G~iv~~G~~  256 (345)
T cd08293         246 ENSHIILCGQI  256 (345)
T ss_pred             cCCEEEEEeee
Confidence            79999999964

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=1.4e-34  Score=248.19  Aligned_cols=224  Identities=28%  Similarity=0.373  Sum_probs=186.6

Q ss_pred             CeEEEEccc--CCC-ccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCC
Q 025278            1 MKAWVYKEY--GNS-QSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGS   77 (255)
Q Consensus         1 mka~v~~~~--~~~-~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~   77 (255)
                      ||+|++..+  +.. .+.++++ +.+.|+|+++||+||+.+++||+.|......     ..+.|.++|+|++|+|++   
T Consensus         3 ~~~~~~~~~~~~~~~~~~l~~~-~~~~p~~~~~evlVkv~a~~in~~~~~~~~~-----~~~~p~v~G~e~~G~V~~---   73 (329)
T cd08294           3 AKTWVLKKHFDGKPKESDFELV-EEELPPLKDGEVLCEALFLSVDPYMRPYSKR-----LNEGDTMIGTQVAKVIES---   73 (329)
T ss_pred             ceEEEEecCCCCCCCccceEEE-ecCCCCCCCCcEEEEEEEEecCHHHhccccc-----CCCCCcEecceEEEEEec---
Confidence            899999984  332 2678999 8999999999999999999999887542211     124588999999999985   


Q ss_pred             CCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCC---ceEeCCCCCC-----HHhhhccchhHHHHHHHH-Hhccc
Q 025278           78 QVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEEN---LLALKPKNLS-----FVEAASLPLATETAYEGL-ERSAF  148 (255)
Q Consensus        78 ~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~lp~~~~-----~~~aa~l~~~~~ta~~~l-~~~~~  148 (255)
                      .++++++||||+..            ++|++|++++..   .++++|++++     ....+.++++++|||+++ +..++
T Consensus        74 ~~~~~~~Gd~V~~~------------~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~  141 (329)
T cd08294          74 KNSKFPVGTIVVAS------------FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKP  141 (329)
T ss_pred             CCCCCCCCCEEEee------------CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCC
Confidence            45679999999973            479999999999   9999999987     233346788999999998 57889


Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc-----CCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL-----PEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-----~~~~d~vid~~G  223 (255)
                      ++|++|+|+|++|++|++++|+|+.+ |++++++++++++.++++++|+++++++.+.++.+.     .+++|++||++|
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g  220 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVG  220 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCC
Confidence            99999999999999999999999995 999999999999999999999999999876654321     357999999999


Q ss_pred             CccceeeeeeccccCCceEEEEeec
Q 025278          224 KMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       224 ~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      +. ....+.++++ .+|+++.+|..
T Consensus       221 ~~-~~~~~~~~l~-~~G~iv~~g~~  243 (329)
T cd08294         221 GE-FSSTVLSHMN-DFGRVAVCGSI  243 (329)
T ss_pred             HH-HHHHHHHhhc-cCCEEEEEcch
Confidence            84 4455677777 78999999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=9e-35  Score=250.66  Aligned_cols=231  Identities=29%  Similarity=0.380  Sum_probs=188.7

Q ss_pred             CeEEEEcccCCCccceEEeecccC----CCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccce--EEEEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEV----PSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDV--AGVVEK   74 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~----p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~--~G~V~~   74 (255)
                      ||+|+...+.  .++|+++ +.+.    |+|+++||+|||++++||+.|+..+.|..+. ....|.++|++.  .|.+..
T Consensus         8 ~~~~~~~~~~--~~~~~~~-~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~-~~~~p~~~g~~~~g~~~~~~   83 (338)
T cd08295           8 LKAYVTGFPK--ESDLELR-TTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDS-LYLPPFKPGEVITGYGVAKV   83 (338)
T ss_pred             EecCCCCCCC--ccceEEE-EecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcc-ccCCCcCCCCeEeccEEEEE
Confidence            4566644433  3678998 7876    8899999999999999999999998885321 124578889754  456656


Q ss_pred             eCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeC-CceEeCC-CCCCHH-hhhccchhHHHHHHHH-HhcccCC
Q 025278           75 VGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEE-NLLALKP-KNLSFV-EAASLPLATETAYEGL-ERSAFSA  150 (255)
Q Consensus        75 ~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~lp-~~~~~~-~aa~l~~~~~ta~~~l-~~~~~~~  150 (255)
                      +|+.++.+++||+|++.            |+|+||+++|. ..++++| +++++. +++.+++++.|||+++ +..++++
T Consensus        84 v~~~v~~~~vGd~V~~~------------g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~  151 (338)
T cd08295          84 VDSGNPDFKVGDLVWGF------------TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKK  151 (338)
T ss_pred             EecCCCCCCCCCEEEec------------CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCC
Confidence            78888899999999863            68999999999 7999995 678876 7888899999999999 4688999


Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCCEEEcCCCc-cccc----c-CCCccEEEECCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADLAIDYTKE-NIED----L-PEKFDVVFDAVG  223 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~v~~~~~~-~~~~----~-~~~~d~vid~~G  223 (255)
                      |++|+|+|++|++|++++|+|+.+ |+++++++++++|.+++++ +|+++++++.+. ++.+    . .+++|++||++|
T Consensus       152 g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g  230 (338)
T cd08295         152 GETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG  230 (338)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence            999999998899999999999995 9999999999999999988 999999997542 3322    1 258999999999


Q ss_pred             CccceeeeeeccccCCceEEEEeeccC
Q 025278          224 KMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       224 ~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +. ....+.++++ ++|+++.+|..++
T Consensus       231 ~~-~~~~~~~~l~-~~G~iv~~G~~~~  255 (338)
T cd08295         231 GK-MLDAVLLNMN-LHGRIAACGMISQ  255 (338)
T ss_pred             HH-HHHHHHHHhc-cCcEEEEeccccc
Confidence            74 4556677777 7899999997654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.9e-34  Score=247.50  Aligned_cols=244  Identities=32%  Similarity=0.417  Sum_probs=198.4

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC------------------CCCCCCc
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA------------------TDSPLPT   62 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~------------------~~~~~p~   62 (255)
                      |||+++..++.. ..+++.++.+.|++.+++|+||+.++++|++|+..+.|.++.                  ....+|.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   79 (350)
T cd08274           1 MRAVLLTGHGGL-DKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPR   79 (350)
T ss_pred             CeEEEEeccCCc-cceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCc
Confidence            899999987765 456676345777889999999999999999999988876531                  1345688


Q ss_pred             ccccceEEEEEEeCCCCCCCCCCCEEEeccCccc----------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhcc
Q 025278           63 IPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKA----------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL  132 (255)
Q Consensus        63 ~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l  132 (255)
                      ++|||++|+|+++|++++++++||||++.+...+          ..+...+|+|++|+.++...++++|+++++.+++.+
T Consensus        80 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l  159 (350)
T cd08274          80 IQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATF  159 (350)
T ss_pred             ccCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhc
Confidence            9999999999999999999999999988532111          011223589999999999999999999999999999


Q ss_pred             chhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc--
Q 025278          133 PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED--  210 (255)
Q Consensus       133 ~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~--  210 (255)
                      ++++.|||++++...+++|++|+|+|++|++|++++++|+++ |+++++++.++ +++.++++|++.+++.......+  
T Consensus       160 ~~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~-g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~  237 (350)
T cd08274         160 PCSYSTAENMLERAGVGAGETVLVTGASGGVGSALVQLAKRR-GAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAK  237 (350)
T ss_pred             ccHHHHHHHHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhc-CCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHH
Confidence            999999999997788999999999998899999999999996 99998888665 88888999998766654433211  


Q ss_pred             --cCCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          211 --LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       211 --~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                        ..+++|++||++|+. ....+.+.++ .+|+++.+|...
T Consensus       238 ~~~~~~~d~vi~~~g~~-~~~~~~~~l~-~~G~~v~~g~~~  276 (350)
T cd08274         238 ALGGEPVDVVADVVGGP-LFPDLLRLLR-PGGRYVTAGAIA  276 (350)
T ss_pred             hhCCCCCcEEEecCCHH-HHHHHHHHhc-cCCEEEEecccC
Confidence              134799999999975 3455567776 789999998653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=2e-34  Score=250.96  Aligned_cols=238  Identities=28%  Similarity=0.341  Sum_probs=200.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++..   ++++ +.+.|++.++||+||+.++++|++|++...|.++   ..+|.++|||++|+|+++|+++.
T Consensus         3 ~~a~~~~~~~~~---~~~~-~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~---~~~p~v~G~e~~G~V~~vG~~v~   75 (365)
T cd08278           3 TTAAVVREPGGP---FVLE-DVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP---TPLPAVLGHEGAGVVEAVGSAVT   75 (365)
T ss_pred             cEEeeeccCCCc---ceEE-EeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC---CCCCcccccceeEEEEEeCCCcc
Confidence            899999987654   5777 7899999999999999999999999999988764   34578999999999999999999


Q ss_pred             CCCCCCEEEeccCcc-------------cc-------CC--------------------CCCCcceeeEEeeeCCceEeC
Q 025278           81 KFKVGDEVYGDINEK-------------AL-------DH--------------------PKRNGSLAEYTAVEENLLALK  120 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~-------------~~-------~~--------------------~~~~g~~~~~~~~~~~~~~~l  120 (255)
                      ++++||+|++....+             +.       .+                    ....|+|++|+.++...++++
T Consensus        76 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~i  155 (365)
T cd08278          76 GLKPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKV  155 (365)
T ss_pred             cCCCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEEC
Confidence            999999998632100             00       00                    112489999999999999999


Q ss_pred             CCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCC
Q 025278          121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGAD  198 (255)
Q Consensus       121 p~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~  198 (255)
                      |+++++++++.+++++.|||+++ +...++++++|+|+| +|++|++++++|+++ |. .+++++++++|.+.++++|++
T Consensus       156 P~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~la~~~-G~~~v~~~~~~~~k~~~~~~~g~~  233 (365)
T cd08278         156 DKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFG-AGAVGLAAVMAAKIA-GCTTIIAVDIVDSRLELAKELGAT  233 (365)
T ss_pred             CCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCc
Confidence            99999999999999999999987 567899999999997 799999999999996 88 477888999999999999999


Q ss_pred             EEEcCCCccccc-----cCCCccEEEECCCCccceeeeeeccccCCceEEEEeec
Q 025278          199 LAIDYTKENIED-----LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       199 ~v~~~~~~~~~~-----~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      .++++.+.++.+     ..+++|+++||+|+......+.+.++ .+|+++.+|..
T Consensus       234 ~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~-~~G~~v~~g~~  287 (365)
T cd08278         234 HVINPKEEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALA-PRGTLALVGAP  287 (365)
T ss_pred             EEecCCCcCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhc-cCCEEEEeCcC
Confidence            999887654322     13579999999997766667777777 78999999975

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2.4e-34  Score=247.49  Aligned_cols=234  Identities=34%  Similarity=0.461  Sum_probs=198.3

Q ss_pred             eEEEEccc---CCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCC
Q 025278            2 KAWVYKEY---GNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQ   78 (255)
Q Consensus         2 ka~v~~~~---~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~   78 (255)
                      |||++..+   +++ +.+++. +.|.|+|+++||+||+.++++|+.|...+.+..+  ....|.++|||++|+|+++|++
T Consensus         1 ~~~~~~~~~~~~~~-~~~~~~-~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~--~~~~~~~~g~e~~G~V~~vG~~   76 (336)
T TIGR02817         1 KAVGYKKPLPITDP-DALVDI-DLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAP--EAGQPKILGWDAAGVVVAVGDE   76 (336)
T ss_pred             CceeeccccCCCCc-ccceec-ccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCC--CCCCCcccceeeEEEEEEeCCC
Confidence            68999987   666 778888 8999999999999999999999999998887653  2345788999999999999999


Q ss_pred             CCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCC-----CC
Q 025278           79 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSA-----GK  152 (255)
Q Consensus        79 v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~-----g~  152 (255)
                      ++++++||+|++...      ....|+|++|++++.+.++++|+++++++++.++++++|||+++ ...++++     |+
T Consensus        77 v~~~~~Gd~V~~~~~------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~  150 (336)
T TIGR02817        77 VTLFKPGDEVWYAGD------IDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKR  150 (336)
T ss_pred             CCCCCCCCEEEEcCC------CCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            999999999997531      11258999999999999999999999999999999999999998 5677776     99


Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c-CCCccEEEECCCCccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L-PEKFDVVFDAVGKMCI  227 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~-~~~~d~vid~~G~~~~  227 (255)
                      +|+|+|++|++|++++|+|+.++|++++++++++++.++++++|+++++++.. ++.+    . .+++|+++|++|+...
T Consensus       151 ~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~i~~~~~~~vd~vl~~~~~~~~  229 (336)
T TIGR02817       151 ALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSK-PLKAQLEKLGLEAVSYVFSLTHTDQH  229 (336)
T ss_pred             EEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCC-CHHHHHHHhcCCCCCEEEEcCCcHHH
Confidence            99999999999999999999844899999999999999999999999998654 2221    1 2479999999876555


Q ss_pred             eeeeeeccccCCceEEEEee
Q 025278          228 SIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       228 ~~~~~~~~~~~~G~~v~~G~  247 (255)
                      .....++++ .+|+++.++.
T Consensus       230 ~~~~~~~l~-~~G~~v~~~~  248 (336)
T TIGR02817       230 FKEIVELLA-PQGRFALIDD  248 (336)
T ss_pred             HHHHHHHhc-cCCEEEEEcc
Confidence            566677776 7899998764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=5.1e-34  Score=246.05  Aligned_cols=237  Identities=27%  Similarity=0.388  Sum_probs=199.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCC-CeEEEEEeEeecChHhHHHHcCCCCCCCC---CCCcccccceEEEEEEeC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLRE-DQVLIKVVAAALNPIDFKRMLGAFSATDS---PLPTIPGYDVAGVVEKVG   76 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~-~eV~V~v~~~~i~~~D~~~~~g~~~~~~~---~~p~~~G~e~~G~V~~~G   76 (255)
                      |||+++..++.+++.++++ +.|.|+|.+ +||+||+.++++|++|+..+.|.++....   ..|.++|||++|+|+++|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG   79 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLE-SYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVG   79 (341)
T ss_pred             CceEEEccCCCchhheEEe-ecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeC
Confidence            9999999998764567888 789998888 99999999999999999998887542211   157789999999999999


Q ss_pred             CCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEE
Q 025278           77 SQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSIL  155 (255)
Q Consensus        77 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~Vl  155 (255)
                      +++..+++||+|++...        ..|+|++|+.++...++++|+++++++++.++++++|+|+++. ...+++|++|+
T Consensus        80 ~~v~~~~~Gd~V~~~~~--------~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vl  151 (341)
T cd08290          80 SGVKSLKPGDWVIPLRP--------GLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVI  151 (341)
T ss_pred             CCCCCCCCCCEEEecCC--------CCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEE
Confidence            99999999999998642        2589999999999999999999999999999999999999984 57789999999


Q ss_pred             EEcCCchHHHHHHHHHHHhcCCcEEEEecCh----hhHHHHHHcCCCEEEcCCCc---cccc----c-CCCccEEEECCC
Q 025278          156 VLGGAGGVGTMVIQLAKHVFGASKVAATSST----AKLDLLRSLGADLAIDYTKE---NIED----L-PEKFDVVFDAVG  223 (255)
Q Consensus       156 I~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~----~~~~~~~~~g~~~v~~~~~~---~~~~----~-~~~~d~vid~~G  223 (255)
                      |+|++|++|++++++|+++ |.++++++.++    ++.++++++|+++++++...   ++..    . .+++|++|||+|
T Consensus       152 I~g~~g~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~vld~~g  230 (341)
T cd08290         152 QNGANSAVGQAVIQLAKLL-GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVG  230 (341)
T ss_pred             EccchhHHHHHHHHHHHHc-CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCCCceEEEECcC
Confidence            9998899999999999995 99999888765    67888889999999987653   3221    1 126999999999


Q ss_pred             CccceeeeeeccccCCceEEEEeecc
Q 025278          224 KMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       224 ~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +... ....++++ .+|+++.+|...
T Consensus       231 ~~~~-~~~~~~l~-~~G~~v~~g~~~  254 (341)
T cd08290         231 GKSA-TELARLLS-PGGTMVTYGGMS  254 (341)
T ss_pred             cHhH-HHHHHHhC-CCCEEEEEeccC
Confidence            7653 34566666 789999998654

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=8.7e-34  Score=244.30  Aligned_cols=241  Identities=24%  Similarity=0.307  Sum_probs=199.4

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++++++.   ..++ +.|.|++.++||+||+.++++|++|+..+.|.++.   ..|.++|||++|+|+++|++++
T Consensus         1 mka~~~~~~~~~---~~~~-~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~~G~~v~   73 (338)
T PRK09422          1 MKAAVVNKDHTG---DVVV-EKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD---KTGRILGHEGIGIVKEVGPGVT   73 (338)
T ss_pred             CeEEEecCCCCC---ceEE-EecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC---CCCccCCcccceEEEEECCCCc
Confidence            999999998876   1277 78999999999999999999999999998887542   2367899999999999999999


Q ss_pred             CCCCCCEEEeccCc-------------------cccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDINE-------------------KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~-------------------~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      .|++||+|++.+.-                   ....+....|+|+||+.++...++++|+++++.+++.++++..|||+
T Consensus        74 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~  153 (338)
T PRK09422         74 SLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYK  153 (338)
T ss_pred             cCCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHH
Confidence            99999999863210                   00012223689999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCC-cccc----ccCCCcc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK-ENIE----DLPEKFD  216 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~----~~~~~~d  216 (255)
                      +++...+++|++|+|+| +|++|++++++|+.+.|.+++++++++++++.++++|++.++++.. .++.    +..+++|
T Consensus       154 ~~~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d  232 (338)
T PRK09422        154 AIKVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAH  232 (338)
T ss_pred             HHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCc
Confidence            99878899999999999 7999999999999734899999999999999999999999998753 2322    1234789


Q ss_pred             EEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          217 VVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       217 ~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+|+++++......+.+.++ .+|+++.+|....
T Consensus       233 ~vi~~~~~~~~~~~~~~~l~-~~G~~v~~g~~~~  265 (338)
T PRK09422        233 AAVVTAVAKAAFNQAVDAVR-AGGRVVAVGLPPE  265 (338)
T ss_pred             EEEEeCCCHHHHHHHHHhcc-CCCEEEEEeeCCC
Confidence            66666666666667777777 7899999997643

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=8.7e-34  Score=245.62  Aligned_cols=241  Identities=23%  Similarity=0.319  Sum_probs=195.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC-------CCCCCCcccccceEEEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA-------TDSPLPTIPGYDVAGVVE   73 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~-------~~~~~p~~~G~e~~G~V~   73 (255)
                      |||++++.+++.    +++ +.+.|++.++||+||+.++++|+.|+..+.|.+..       ...+.|.++|||++|+|+
T Consensus         1 mka~~~~~~~~~----~~~-~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~   75 (350)
T cd08256           1 MRAVVCHGPQDY----RLE-EVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVV   75 (350)
T ss_pred             CeeEEEecCCce----EEE-ECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEE
Confidence            999999987754    888 89999999999999999999999999988875311       011457789999999999


Q ss_pred             EeCCCCC--CCCCCCEEEeccCcccc------------------CCC--CCCcceeeEEeeeCC-ceEeCCCCCCHHhhh
Q 025278           74 KVGSQVK--KFKVGDEVYGDINEKAL------------------DHP--KRNGSLAEYTAVEEN-LLALKPKNLSFVEAA  130 (255)
Q Consensus        74 ~~G~~v~--~~~~Gd~V~~~~~~~~~------------------~~~--~~~g~~~~~~~~~~~-~~~~lp~~~~~~~aa  130 (255)
                      ++|++++  ++++||+|++.+...+.                  .+.  ...|+|++|+.++.+ .++++|+++++++++
T Consensus        76 ~vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa  155 (350)
T cd08256          76 ELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAI  155 (350)
T ss_pred             EeCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHh
Confidence            9999998  89999999873211000                  001  136899999999988 678999999998888


Q ss_pred             ccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCcccc
Q 025278          131 SLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIE  209 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  209 (255)
                      .+ .++.++|++++..++++|++|+|.| +|++|++++++|+++ |++ +++++++++|.+.++++|++.++++...++.
T Consensus       156 ~~-~~~~ta~~a~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  232 (350)
T cd08256         156 LI-EPLACALHAVDRANIKFDDVVVLAG-AGPLGLGMIGAARLK-NPKKLIVLDLKDERLALARKFGADVVLNPPEVDVV  232 (350)
T ss_pred             hh-hHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHH
Confidence            87 8888999998778899999999955 899999999999997 765 5677889999999999999999887654432


Q ss_pred             c----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          210 D----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       210 ~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +    .  .+++|++||++|+......+.++++ .+|+++.+|.+..
T Consensus       233 ~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  278 (350)
T cd08256         233 EKIKELTGGYGCDIYIEATGHPSAVEQGLNMIR-KLGRFVEFSVFGD  278 (350)
T ss_pred             HHHHHHhCCCCCCEEEECCCChHHHHHHHHHhh-cCCEEEEEccCCC
Confidence            2    1  2369999999997655566677777 7899999987654

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=9.5e-34  Score=243.00  Aligned_cols=235  Identities=30%  Similarity=0.377  Sum_probs=202.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++++.+++.+ ..++++ +.+.|+|.++||+||+.++++|++|+....|.++.  ..+|.++|||++|+|+.+|++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~vG~~v~   77 (327)
T PRK10754          2 AKRIEFHKHGGP-EVLQAV-EFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP--PSLPSGLGTEAAGVVSKVGSGVK   77 (327)
T ss_pred             ceEEEEeccCCh-hHeEEe-eccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC--CCCCCccCcceEEEEEEeCCCCC
Confidence            899999999887 788999 88999999999999999999999999988887642  34578899999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                      .+++||+|+...        ...|+|++|+.++.+.++++|+++++++++.+++...++|+++. ...+++|++|+|+|+
T Consensus        78 ~~~~Gd~V~~~~--------~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~  149 (327)
T PRK10754         78 HIKVGDRVVYAQ--------SALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA  149 (327)
T ss_pred             CCCCCCEEEECC--------CCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence            999999998642        12589999999999999999999999999988889999999984 578999999999998


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|.+|++++++|+.+ |++++.++++++++++++++|++++++....++.+.      .+++|++|||+|+.. ......
T Consensus       150 ~g~ig~~~~~lak~~-G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~  227 (327)
T PRK10754        150 AGGVGLIACQWAKAL-GAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGKDT-WEASLD  227 (327)
T ss_pred             CcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcHHH-HHHHHH
Confidence            999999999999995 999999999999999999999999988765544321      247999999999743 344566


Q ss_pred             ccccCCceEEEEeeccC
Q 025278          234 CDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~~  250 (255)
                      .++ .+|+++.+|..+.
T Consensus       228 ~l~-~~g~~v~~g~~~~  243 (327)
T PRK10754        228 CLQ-RRGLMVSFGNASG  243 (327)
T ss_pred             Hhc-cCCEEEEEccCCC
Confidence            666 7899999997653

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.9e-33  Score=242.46  Aligned_cols=244  Identities=29%  Similarity=0.409  Sum_probs=204.6

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..++ . ..++++ +.+.|.|.++|++||+.++++|++|+..+.|.++.. ...|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~-~-~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~V~~vG~~~~   76 (341)
T cd08297           1 MKAAVVEEFG-E-KPYEVK-DVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVK-PKLPLIGGHEGAGVVVAVGPGVS   76 (341)
T ss_pred             CceEEeeccC-C-CCceEE-EeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcC-CCCCccCCcccceEEEEeCCCCC
Confidence            9999999887 2 446888 789999999999999999999999999988876422 34567899999999999999999


Q ss_pred             CCCCCCEEEeccC-----c--------------cccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDIN-----E--------------KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~~-----~--------------~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      .+++||+|+..+.     .              ....+....|+|++|+.++.+.++++|+++++.+++.++....|||+
T Consensus        77 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~  156 (341)
T cd08297          77 GLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYK  156 (341)
T ss_pred             CCCCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHH
Confidence            9999999987421     0              00111223689999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CCCc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PEKF  215 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~~  215 (255)
                      ++...+++++++|+|+|+.+.+|++++++|+++ |.+++++++++++.+.++++|++.++++.+.++.+    .  .+++
T Consensus       157 ~~~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~v  235 (341)
T cd08297         157 ALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAM-GLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGA  235 (341)
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCC
Confidence            997778999999999998888999999999995 99999999999999999999999999887654322    1  3579


Q ss_pred             cEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          216 DVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       216 d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |++||+.++......+.+.++ .+|+++.+|....
T Consensus       236 d~vl~~~~~~~~~~~~~~~l~-~~g~~v~~g~~~~  269 (341)
T cd08297         236 HAVVVTAVSAAAYEQALDYLR-PGGTLVCVGLPPG  269 (341)
T ss_pred             CEEEEcCCchHHHHHHHHHhh-cCCEEEEecCCCC
Confidence            999998887666666677776 7899999997653

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=8.3e-34  Score=245.17  Aligned_cols=240  Identities=28%  Similarity=0.343  Sum_probs=200.4

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCC-CCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSL-REDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~-~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++.++++.    ++. +.|.|+| .++||+||+.++++|++|++.+.|.++.  .++|.++|||++|+|+++|+++
T Consensus         1 ~ka~~~~~~~~~----~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~vG~~v   73 (347)
T cd05278           1 MKALVYLGPGKI----GLE-EVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG--AKHGMILGHEFVGEVVEVGSDV   73 (347)
T ss_pred             CceEEEecCCce----EEE-EcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC--CCCCceeccceEEEEEEECCCc
Confidence            899999987764    788 7898989 9999999999999999999999887753  4568899999999999999999


Q ss_pred             CCCCCCCEEEeccCcccc---------------------CCCCCCcceeeEEeeeCC--ceEeCCCCCCHHhhhccchhH
Q 025278           80 KKFKVGDEVYGDINEKAL---------------------DHPKRNGSLAEYTAVEEN--LLALKPKNLSFVEAASLPLAT  136 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~---------------------~~~~~~g~~~~~~~~~~~--~~~~lp~~~~~~~aa~l~~~~  136 (255)
                      +++++||+|++.+...+.                     .+....|+|++|++++.+  .++++|++++.++++.+++++
T Consensus        74 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~  153 (347)
T cd05278          74 KRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDIL  153 (347)
T ss_pred             cccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchh
Confidence            999999999984321100                     011236899999999987  899999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCcccccc----
Q 025278          137 ETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL----  211 (255)
Q Consensus       137 ~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~----  211 (255)
                      +|||+++...+++++++|+|.| +|++|++++|+|+.+ |. +++++++++++.+.++++|++.++++.+.++.+.    
T Consensus       154 ~ta~~~~~~~~~~~~~~VlI~g-~g~vg~~~iqlak~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~  231 (347)
T cd05278         154 PTGFHGAELAGIKPGSTVAVIG-AGPVGLCAVAGARLL-GAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILEL  231 (347)
T ss_pred             hheeehhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHH
Confidence            9999998777899999999986 799999999999996 75 7888888889999999999999998876544321    


Q ss_pred             --CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 --PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 --~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                        .+++|++||++|+......+.+.++ .+|+++.+|...+
T Consensus       232 ~~~~~~d~vld~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  271 (347)
T cd05278         232 TGGRGVDCVIEAVGFEETFEQAVKVVR-PGGTIANVGVYGK  271 (347)
T ss_pred             cCCCCCcEEEEccCCHHHHHHHHHHhh-cCCEEEEEcCCCC
Confidence              2479999999997545555566676 7899999987654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=2.2e-33  Score=246.14  Aligned_cols=240  Identities=26%  Similarity=0.327  Sum_probs=195.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCC-CCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~-~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++..+++    ++++ +++.|+|. +++|+||+.+++||++|+..+.|.++.  .++|.++|||++|+|+++|+++
T Consensus         1 m~a~~~~~~~~----~~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v   73 (386)
T cd08283           1 MKALVWHGKGD----VRVE-EVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG--MKKGDILGHEFMGVVEEVGPEV   73 (386)
T ss_pred             CeeEEEecCCC----ceEE-eCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC--CCCCccccccceEEEEEeCCCC
Confidence            99999987654    4888 78999884 999999999999999999999998753  3568899999999999999999


Q ss_pred             CCCCCCCEEEeccCcccc---------------------------------CC-----CCCCcceeeEEeeeCC--ceEe
Q 025278           80 KKFKVGDEVYGDINEKAL---------------------------------DH-----PKRNGSLAEYTAVEEN--LLAL  119 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~---------------------------------~~-----~~~~g~~~~~~~~~~~--~~~~  119 (255)
                      +++++||+|++.+...+.                                 .+     ....|+|++|++++.+  .+++
T Consensus        74 ~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~  153 (386)
T cd08283          74 RNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFK  153 (386)
T ss_pred             CCCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEE
Confidence            999999999885421000                                 00     0136899999999988  8999


Q ss_pred             CCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCC
Q 025278          120 KPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGAD  198 (255)
Q Consensus       120 lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~  198 (255)
                      +|+++++++++.++.+.+|||++++...+++|++|+|+| +|++|++++++|+++ |. +++++++++++.+.+++++..
T Consensus       154 lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g-~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~~~~  231 (386)
T cd08283         154 IPDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWG-CGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSHLGA  231 (386)
T ss_pred             CCCCCCHHHHhhhccchhhhHHHHhhccCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCc
Confidence            999999999999999999999999778899999999997 799999999999996 76 588999999999999998444


Q ss_pred             EEEcCCCcc-ccc----c--CCCccEEEECCCCcc---------------------ceeeeeeccccCCceEEEEeeccC
Q 025278          199 LAIDYTKEN-IED----L--PEKFDVVFDAVGKMC---------------------ISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       199 ~v~~~~~~~-~~~----~--~~~~d~vid~~G~~~---------------------~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .++++...+ +.+    .  .+++|++||++|+..                     ....+.++++ ++|+++.+|..+.
T Consensus       232 ~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~iv~~g~~~~  310 (386)
T cd08283         232 ETINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVR-KGGTVSIIGVYGG  310 (386)
T ss_pred             EEEcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhc-cCCEEEEEcCCCC
Confidence            677766542 322    1  237999999998642                     2333456666 7899999997654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=1.3e-33  Score=243.90  Aligned_cols=239  Identities=25%  Similarity=0.342  Sum_probs=198.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCC-CCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSL-REDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~-~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++++++.    ++++ +.+.|+| .++||+||+.++++|++|+..+.|.++.  .++|.++|||++|+|+++|+++
T Consensus         1 m~a~~~~~~~~----~~~~-~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~~G~~v   73 (345)
T cd08286           1 MKALVYHGPGK----ISWE-DRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT--VTPGRILGHEGVGVVEEVGSAV   73 (345)
T ss_pred             CceEEEecCCc----eeEE-ecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC--CCCCceecccceEEEEEeccCc
Confidence            99999998775    4888 8899886 8999999999999999999999887642  3447899999999999999999


Q ss_pred             CCCCCCCEEEeccCcccc-------------------CCCCCCcceeeEEeeeCC--ceEeCCCCCCHHhhhccchhHHH
Q 025278           80 KKFKVGDEVYGDINEKAL-------------------DHPKRNGSLAEYTAVEEN--LLALKPKNLSFVEAASLPLATET  138 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~-------------------~~~~~~g~~~~~~~~~~~--~~~~lp~~~~~~~aa~l~~~~~t  138 (255)
                      +++++||+|+..+...+.                   .+....|+|++|+.++.+  .++++|++++..+++.+++++++
T Consensus        74 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~t  153 (345)
T cd08286          74 TNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPT  153 (345)
T ss_pred             cccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHH
Confidence            999999999885421100                   111235899999999987  89999999999999999999999


Q ss_pred             HHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c-
Q 025278          139 AYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L-  211 (255)
Q Consensus       139 a~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~-  211 (255)
                      ||+++ ....+.++++|+|.| +|++|++++|+|+.+ | .++++++++++|.+.++++|++.++++...++..    . 
T Consensus       154 a~~~~~~~~~~~~g~~vlI~g-~g~~g~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~  231 (345)
T cd08286         154 GYECGVLNGKVKPGDTVAIVG-AGPVGLAALLTAQLY-SPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELT  231 (345)
T ss_pred             HHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHh
Confidence            99876 567889999999987 699999999999996 7 7888888899999999999999999886544322    1 


Q ss_pred             -CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          212 -PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       212 -~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                       .+++|++|||+|.......+.+.++ ++|+++.+|..+
T Consensus       232 ~~~~~d~vld~~g~~~~~~~~~~~l~-~~g~~v~~g~~~  269 (345)
T cd08286         232 DGRGVDVVIEAVGIPATFELCQELVA-PGGHIANVGVHG  269 (345)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHhcc-CCcEEEEecccC
Confidence             2479999999987666655667776 789999999754

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=4.4e-33  Score=238.20  Aligned_cols=237  Identities=32%  Similarity=0.427  Sum_probs=201.6

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCC-CCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSAT-DSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~-~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++++++.. ..+++. +.+.|.+.++||+||+.++++|++|+....|..+.. ....|.++|||++|+|+++|+++
T Consensus         1 ~~a~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v   78 (324)
T cd08244           1 MRAIRLHEFGPP-EVLVPE-DVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGV   78 (324)
T ss_pred             CeEEEEcCCCCc-cceEEe-ccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCC
Confidence            999999987776 667787 677778899999999999999999999888765321 23457889999999999999999


Q ss_pred             CCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcC
Q 025278           80 KKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGG  159 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga  159 (255)
                      ..+++||+|++...       ...|+|++|+.++...++++|+++++++++.+++++.|||..++..+++++++|+|+|+
T Consensus        79 ~~~~~Gd~V~~~~~-------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vlI~g~  151 (324)
T cd08244          79 DPAWLGRRVVAHTG-------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAA  151 (324)
T ss_pred             CCCCCCCEEEEccC-------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            99999999998642       13689999999999999999999999999999999999976567788999999999999


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++++++|+.+ |.+++++++++++.+.++++|++.++++.+.++.+.      .+++|+++|++|+... ..+.+
T Consensus       152 ~~~~g~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~-~~~~~  229 (324)
T cd08244         152 AGGLGSLLVQLAKAA-GATVVGAAGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGGAIG-RAALA  229 (324)
T ss_pred             CchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCChHhH-HHHHH
Confidence            999999999999995 999999999999999999999998888765543221      2479999999998754 55566


Q ss_pred             ccccCCceEEEEeecc
Q 025278          234 CDKFQEKSLINFGLFR  249 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~  249 (255)
                      .++ .+|+++.+|...
T Consensus       230 ~l~-~~g~~v~~g~~~  244 (324)
T cd08244         230 LLA-PGGRFLTYGWAS  244 (324)
T ss_pred             Hhc-cCcEEEEEecCC
Confidence            676 689999999764

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=100.00  E-value=4.5e-33  Score=238.25  Aligned_cols=239  Identities=28%  Similarity=0.338  Sum_probs=197.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++.++++ +.++++ +.|.|.+.++||+||+.++++|++|+..+.|.++. ...+|.++|||++|+|+++  +++
T Consensus         1 ~~a~~~~~~~~~-~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~--~~~   75 (325)
T cd05280           1 FKALVVEEQDGG-VSLFLR-TLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGV-TRNYPHTPGIDAAGTVVSS--DDP   75 (325)
T ss_pred             CceEEEcccCCC-CcceEE-eCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCC-CCCCCCccCcccEEEEEEe--CCC
Confidence            999999999875 557898 89999999999999999999999999999887542 2345788999999999998  456


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHh---cccC-CCCEEEE
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER---SAFS-AGKSILV  156 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~---~~~~-~g~~VlI  156 (255)
                      .+++||+|++....   .+....|+|++|+.++.+.++++|+++++++++.+++.+.++|+++..   ..+. .+++|+|
T Consensus        76 ~~~~Gd~V~~~~~~---~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI  152 (325)
T cd05280          76 RFREGDEVLVTGYD---LGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLV  152 (325)
T ss_pred             CCCCCCEEEEcccc---cCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence            79999999986321   122236899999999999999999999999999999999999998853   2335 4579999


Q ss_pred             EcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc--ccc--cCCCccEEEECCCCccceeeee
Q 025278          157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN--IED--LPEKFDVVFDAVGKMCISIVYQ  232 (255)
Q Consensus       157 ~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~--~~~~~d~vid~~G~~~~~~~~~  232 (255)
                      +|++|++|++++++|+.+ |++++++++++++++.++++|+++++++.+..  ...  ..+++|++||++|+. ....+.
T Consensus       153 ~g~~g~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~  230 (325)
T cd05280         153 TGATGGVGSIAVAILAKL-GYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGD-VLANLL  230 (325)
T ss_pred             ECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchH-HHHHHH
Confidence            998899999999999995 99999999999999999999999998875431  111  124799999999985 455567


Q ss_pred             eccccCCceEEEEeeccC
Q 025278          233 KCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       233 ~~~~~~~G~~v~~G~~~~  250 (255)
                      ++++ .+|+++.+|....
T Consensus       231 ~~l~-~~g~~v~~g~~~~  247 (325)
T cd05280         231 KQTK-YGGVVASCGNAAG  247 (325)
T ss_pred             Hhhc-CCCEEEEEecCCC
Confidence            7776 7899999997643

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=3.7e-33  Score=245.34  Aligned_cols=246  Identities=31%  Similarity=0.408  Sum_probs=195.8

Q ss_pred             CeEEEEc--ccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC-------C-CCCCCcccccceEE
Q 025278            1 MKAWVYK--EYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA-------T-DSPLPTIPGYDVAG   70 (255)
Q Consensus         1 mka~v~~--~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~-------~-~~~~p~~~G~e~~G   70 (255)
                      |||+++.  .++++...++++ +.+.|.++++||+||+.+++||++|++...+....       . ....+.++|||++|
T Consensus        13 ~~a~~~~~~~~g~~~~~~~~~-~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G   91 (393)
T cd08246          13 MYAFAIRPERYGDPAQAIQLE-DVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASG   91 (393)
T ss_pred             hhheeeecccCCCcccceEEe-ecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEE
Confidence            8898885  344442357888 88999999999999999999999999887764100       0 01123589999999


Q ss_pred             EEEEeCCCCCCCCCCCEEEeccCcccc------------------CCC-CCCcceeeEEeeeCCceEeCCCCCCHHhhhc
Q 025278           71 VVEKVGSQVKKFKVGDEVYGDINEKAL------------------DHP-KRNGSLAEYTAVEENLLALKPKNLSFVEAAS  131 (255)
Q Consensus        71 ~V~~~G~~v~~~~~Gd~V~~~~~~~~~------------------~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~  131 (255)
                      +|+++|++++.+++||+|++.+...+.                  .+. ...|+|++|+.++...++++|+++++++++.
T Consensus        92 ~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~  171 (393)
T cd08246          92 IVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAA  171 (393)
T ss_pred             EEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhh
Confidence            999999999999999999886421110                  000 1258999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHh---cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc-
Q 025278          132 LPLATETAYEGLER---SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-  207 (255)
Q Consensus       132 l~~~~~ta~~~l~~---~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~-  207 (255)
                      +++++.|||+++..   .++++|++|+|+|++|++|++++++|+.+ |+++++++++++|++.++++|+++++++++.+ 
T Consensus       172 l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~-G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~  250 (393)
T cd08246         172 YMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAA-GANPVAVVSSEEKAEYCRALGAEGVINRRDFDH  250 (393)
T ss_pred             hcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHcCCCEEEccccccc
Confidence            99999999999843   67899999999998899999999999996 99999999999999999999999999874321 


Q ss_pred             ---------------------ccc----c--CC-CccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          208 ---------------------IED----L--PE-KFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       208 ---------------------~~~----~--~~-~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                                           +.+    .  .. ++|++||++|+. ....+.++++ .+|+++.+|...+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~-~~~~~~~~l~-~~G~~v~~g~~~~  319 (393)
T cd08246         251 WGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRA-TFPTSVFVCD-RGGMVVICAGTTG  319 (393)
T ss_pred             ccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchH-hHHHHHHHhc-cCCEEEEEcccCC
Confidence                                 101    1  12 799999999974 3455567776 6899999987543

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=4.7e-33  Score=240.78  Aligned_cols=231  Identities=28%  Similarity=0.378  Sum_probs=184.1

Q ss_pred             eEEEEccc----CCCccceEEeec--ccCC-CCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCccccc--ceEEEE
Q 025278            2 KAWVYKEY----GNSQSVLKFETN--VEVP-SLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGY--DVAGVV   72 (255)
Q Consensus         2 ka~v~~~~----~~~~~~l~~~~~--~~~p-~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~--e~~G~V   72 (255)
                      |+|++.++    -.+ +.|++++.  .+.| ++++|||+||+.++++|+.|...+.+..+  ....|.++|+  |++|+|
T Consensus        10 ~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~--~~~~p~~~G~~~~~~G~v   86 (348)
T PLN03154         10 KQVILKNYIDGIPKE-TDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHD--SYLPPFVPGQRIEGFGVS   86 (348)
T ss_pred             eEEEEecCCCCCCCc-ccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCC--CCCCCcCCCCeeEeeEEE
Confidence            56777322    122 45788732  3555 45899999999999999998765443221  1235789998  889999


Q ss_pred             EEeCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCc--eEe--CCCCCCHH-hhhccchhHHHHHHHH-Hhc
Q 025278           73 EKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENL--LAL--KPKNLSFV-EAASLPLATETAYEGL-ERS  146 (255)
Q Consensus        73 ~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~--lp~~~~~~-~aa~l~~~~~ta~~~l-~~~  146 (255)
                      ..+|++++++++||+|++            .|+|+||.+++...  +++  +|++++++ +++.++++.+|||+++ +..
T Consensus        87 ~~vg~~v~~~~~Gd~V~~------------~~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~  154 (348)
T PLN03154         87 KVVDSDDPNFKPGDLISG------------ITGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVC  154 (348)
T ss_pred             EEEecCCCCCCCCCEEEe------------cCCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhc
Confidence            999999999999999987            36899999998753  544  58999986 6778899999999999 467


Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCc-ccccc-----CCCccEEE
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKE-NIEDL-----PEKFDVVF  219 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~-~~~~~-----~~~~d~vi  219 (255)
                      .+++|++|+|+|++|++|++++|+|+.+ |+++++++++++|++.++ ++|+++++++.+. ++.+.     .+++|++|
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~  233 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYF  233 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEE
Confidence            8999999999998899999999999995 999999999999999987 7999999998643 33221     34799999


Q ss_pred             ECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          220 DAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       220 d~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |++|+. ....+..+++ ++|+++.+|..++
T Consensus       234 d~vG~~-~~~~~~~~l~-~~G~iv~~G~~~~  262 (348)
T PLN03154        234 DNVGGD-MLDAALLNMK-IHGRIAVCGMVSL  262 (348)
T ss_pred             ECCCHH-HHHHHHHHhc-cCCEEEEECcccc
Confidence            999975 4556677777 7899999998764

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=100.00  E-value=4.7e-33  Score=238.44  Aligned_cols=239  Identities=27%  Similarity=0.323  Sum_probs=195.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++.+++. ..++++ +.+.|.|.++||+||+.++++|++|.....+... ....+|.++|||++|+|++.|  +.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~-~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~V~~~~--~~   75 (326)
T cd08289           1 FQALVVEKDEDD-VSVSVK-NLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGK-IVKRYPFIPGIDLAGTVVESN--DP   75 (326)
T ss_pred             CeeEEEeccCCc-ceeEEE-EccCCCCCCCeEEEEEEEEecChHHhhhhcCCcc-ccCCCCcCcccceeEEEEEcC--CC
Confidence            999999998876 677888 8999999999999999999999999876643211 123458899999999999954  56


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHh---cc-cCCCCEEEE
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER---SA-FSAGKSILV  156 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~---~~-~~~g~~VlI  156 (255)
                      ++++||+|++....   .+....|+|++|+.++.+.++++|+++++++++.++++..|||+++..   .. ..++++|+|
T Consensus        76 ~~~~Gd~V~~~~~~---~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI  152 (326)
T cd08289          76 RFKPGDEVIVTSYD---LGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLV  152 (326)
T ss_pred             CCCCCCEEEEcccc---cCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence            79999999986531   122347999999999999999999999999999999999999988742   23 345789999


Q ss_pred             EcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc---cc-CCCccEEEECCCCccceeeee
Q 025278          157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE---DL-PEKFDVVFDAVGKMCISIVYQ  232 (255)
Q Consensus       157 ~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~---~~-~~~~d~vid~~G~~~~~~~~~  232 (255)
                      +|++|++|++++++|+++ |.+++++++++++.++++++|++.++++.+....   .. .+++|++||++|+. ....+.
T Consensus       153 ~g~~g~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~-~~~~~~  230 (326)
T cd08289         153 TGATGGVGSLAVSILAKL-GYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGK-TLAYLL  230 (326)
T ss_pred             EcCCchHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHH-HHHHHH
Confidence            998899999999999995 9999999999999999999999999887643211   11 24799999999974 455567


Q ss_pred             eccccCCceEEEEeeccC
Q 025278          233 KCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       233 ~~~~~~~G~~v~~G~~~~  250 (255)
                      ..++ .+|+++.+|....
T Consensus       231 ~~l~-~~G~~i~~g~~~~  247 (326)
T cd08289         231 STLQ-YGGSVAVSGLTGG  247 (326)
T ss_pred             HHhh-cCCEEEEEeecCC
Confidence            7776 7899999998643

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=8e-33  Score=234.79  Aligned_cols=225  Identities=32%  Similarity=0.408  Sum_probs=191.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++++++++ + ..++++ +.+.|.+.++||+||+.++++|+.|++...+.      ..|.++|||++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~-~-~~~~~~-~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~------~~~~~~g~e~~G~v~~~G~~v~   71 (305)
T cd08270           1 MRALVVDPDA-P-LRLRLG-EVPDPQPAPHEALVRVAAISLNRGELKFAAER------PDGAVPGWDAAGVVERAAADGS   71 (305)
T ss_pred             CeEEEEccCC-C-ceeEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHhhccC------CCCCcccceeEEEEEEeCCCCC
Confidence            8999998866 4 567888 78889999999999999999999999876521      2357899999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGA  160 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~  160 (255)
                      .+++||+|++..         ..|+|++|+.++.+.++++|+++++++++.+++.+.|||+++......+|++|+|+|+.
T Consensus        72 ~~~~Gd~V~~~~---------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vli~g~~  142 (305)
T cd08270          72 GPAVGARVVGLG---------AMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPLLGRRVLVTGAS  142 (305)
T ss_pred             CCCCCCEEEEec---------CCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence            999999999864         25899999999999999999999999999999999999999865554569999999988


Q ss_pred             chHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccceeeeeeccccCCc
Q 025278          161 GGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEK  240 (255)
Q Consensus       161 g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G  240 (255)
                      |++|++++++|+.. |++++.+++++++.+.++++|++.+++... +..  .+++|+++|++|+.. ...+.++++ .+|
T Consensus       143 ~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~--~~~~d~vl~~~g~~~-~~~~~~~l~-~~G  216 (305)
T cd08270         143 GGVGRFAVQLAALA-GAHVVAVVGSPARAEGLRELGAAEVVVGGS-ELS--GAPVDLVVDSVGGPQ-LARALELLA-PGG  216 (305)
T ss_pred             cHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCcEEEeccc-ccc--CCCceEEEECCCcHH-HHHHHHHhc-CCC
Confidence            99999999999995 899999999999999999999876654322 111  247999999999764 455677776 689


Q ss_pred             eEEEEeecc
Q 025278          241 SLINFGLFR  249 (255)
Q Consensus       241 ~~v~~G~~~  249 (255)
                      +++.+|...
T Consensus       217 ~~v~~g~~~  225 (305)
T cd08270         217 TVVSVGSSS  225 (305)
T ss_pred             EEEEEeccC
Confidence            999999754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=4.9e-33  Score=239.94  Aligned_cols=239  Identities=25%  Similarity=0.310  Sum_probs=193.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCC---------CCCCCCCcccccceEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFS---------ATDSPLPTIPGYDVAGV   71 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~---------~~~~~~p~~~G~e~~G~   71 (255)
                      |||+++..+  .   ++++ +.+.|+++++||+||+.++++|+.|+....|...         .....+|.++|||++|+
T Consensus         1 m~a~~~~~~--~---~~~~-~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~   74 (341)
T cd08262           1 MRAAVFRDG--P---LVVR-DVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGE   74 (341)
T ss_pred             CceEEEeCC--c---eEEE-ecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEE
Confidence            999999865  2   6888 8999999999999999999999999999887321         01223578899999999


Q ss_pred             EEEeCCCCCC-CCCCCEEEeccCccccCCC--------CCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           72 VEKVGSQVKK-FKVGDEVYGDINEKALDHP--------KRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        72 V~~~G~~v~~-~~~Gd~V~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      |+++|+++++ +++||+|++.+...+..+.        ...|+|+||+.++.+.++++|+++++++++ ++.++++||++
T Consensus        75 V~~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~  153 (341)
T cd08262          75 VVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHA  153 (341)
T ss_pred             EEEeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHH
Confidence            9999999987 9999999987432221111        136899999999999999999999988776 66788899999


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCcccc-------c--cC
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIE-------D--LP  212 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~-------~--~~  212 (255)
                      +...++++|++|+|+| +|++|.+++|+|+.+ |++ +++++.++++.+.++++|+++++++...+..       .  ..
T Consensus       154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~  231 (341)
T cd08262         154 VRRARLTPGEVALVIG-CGPIGLAVIAALKAR-GVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGG  231 (341)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCC
Confidence            8788899999999997 699999999999996 776 5566778999999999999999987654211       1  12


Q ss_pred             CCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          213 EKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       213 ~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +++|++||++|+......+.+.++ .+|+++.+|...
T Consensus       232 ~~~d~vid~~g~~~~~~~~~~~l~-~~g~~v~~g~~~  267 (341)
T cd08262         232 PKPAVIFECVGAPGLIQQIIEGAP-PGGRIVVVGVCM  267 (341)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhc-cCCEEEEECCCC
Confidence            469999999997544555566666 789999999764

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=2.3e-33  Score=240.63  Aligned_cols=212  Identities=28%  Similarity=0.371  Sum_probs=179.0

Q ss_pred             cceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeccC
Q 025278           14 SVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDIN   93 (255)
Q Consensus        14 ~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~   93 (255)
                      +.++++ +.+.|+|++|||+|||.++++|+.+.   +|.++  ....|.++|.|++|+|++.|+   .+++||||++.  
T Consensus        17 ~~l~~~-~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~--~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~--   85 (325)
T TIGR02825        17 SDFELK-TVELPPLNNGEVLLEALFLSVDPYMR---VAAKR--LKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS--   85 (325)
T ss_pred             CceEEE-eccCCCCCCCcEEEEEEEEecCHHHh---cccCc--CCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe--
Confidence            568888 89999999999999999999999654   34332  123478999999999999774   59999999973  


Q ss_pred             ccccCCCCCCcceeeEEeeeCCceEeC----CCCCCHHhh-hccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHH
Q 025278           94 EKALDHPKRNGSLAEYTAVEENLLALK----PKNLSFVEA-ASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMV  167 (255)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~~~~~l----p~~~~~~~a-a~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a  167 (255)
                                ++|++|++++.+.+.++    |++++++++ +.++++++|||+++ +..++++|++|+|+|++|++|+++
T Consensus        86 ----------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~a  155 (325)
T TIGR02825        86 ----------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVV  155 (325)
T ss_pred             ----------cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHH
Confidence                      46999999999888877    899999887 67899999999998 678899999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCc-cccc----c-CCCccEEEECCCCccceeeeeeccccCCce
Q 025278          168 IQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKE-NIED----L-PEKFDVVFDAVGKMCISIVYQKCDKFQEKS  241 (255)
Q Consensus       168 ~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~----~-~~~~d~vid~~G~~~~~~~~~~~~~~~~G~  241 (255)
                      +|+|+.. |+++++++++++|.++++++|+++++++++. ++.+    . .+++|++||++|+.. ...+.++++ ++|+
T Consensus       156 iqlAk~~-G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~~-~~~~~~~l~-~~G~  232 (325)
T TIGR02825       156 GQIAKLK-GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEF-SNTVIGQMK-KFGR  232 (325)
T ss_pred             HHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCHHH-HHHHHHHhC-cCcE
Confidence            9999995 9999999999999999999999999998763 3322    1 247999999999765 456677777 7999


Q ss_pred             EEEEeecc
Q 025278          242 LINFGLFR  249 (255)
Q Consensus       242 ~v~~G~~~  249 (255)
                      ++.+|..+
T Consensus       233 iv~~G~~~  240 (325)
T TIGR02825       233 IAICGAIS  240 (325)
T ss_pred             EEEecchh
Confidence            99999754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=7.9e-33  Score=237.50  Aligned_cols=235  Identities=34%  Similarity=0.497  Sum_probs=200.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..++.. ..++++ +.+.|++.++||+||+.++++|+.|+....|.++. ....|.++|||++|+|+++|++++
T Consensus         2 m~a~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~   78 (334)
T PTZ00354          2 MRAVTLKGFGGV-DVLKIG-ESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP-PPGSSEILGLEVAGYVEDVGSDVK   78 (334)
T ss_pred             cEEEEEEecCCC-cceEEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCcccceeeEEEEEEeCCCCC
Confidence            999999998876 567887 67778899999999999999999999998886532 234467899999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                      ++++||+|++..         .+|+|++|++++...++++|++++.++++.+++++.+||+++. ...+++|++|+|+|+
T Consensus        79 ~~~~Gd~V~~~~---------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga  149 (334)
T PTZ00354         79 RFKEGDRVMALL---------PGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAG  149 (334)
T ss_pred             CCCCCCEEEEec---------CCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            999999999863         1589999999999999999999999999989999999999985 478999999999999


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc-ccc----c--CCCccEEEECCCCccceeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IED----L--PEKFDVVFDAVGKMCISIVYQ  232 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~----~--~~~~d~vid~~G~~~~~~~~~  232 (255)
                      +|++|++++++|+++ |++++++++++++.+.++++|+++++++...+ +.+    .  .+++|++||++|+.. ...+.
T Consensus       150 ~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~  227 (334)
T PTZ00354        150 ASGVGTAAAQLAEKY-GAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSY-LSETA  227 (334)
T ss_pred             CchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCchHH-HHHHH
Confidence            999999999999996 99988899999999999999999898875533 221    1  247999999998643 44456


Q ss_pred             eccccCCceEEEEeeccC
Q 025278          233 KCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       233 ~~~~~~~G~~v~~G~~~~  250 (255)
                      .++. .+|+++.+|...+
T Consensus       228 ~~l~-~~g~~i~~~~~~~  244 (334)
T PTZ00354        228 EVLA-VDGKWIVYGFMGG  244 (334)
T ss_pred             HHhc-cCCeEEEEecCCC
Confidence            6666 7899999986543

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=100.00  E-value=5.8e-33  Score=238.25  Aligned_cols=231  Identities=29%  Similarity=0.406  Sum_probs=197.7

Q ss_pred             CeEEEEcccCC--CccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCC
Q 025278            1 MKAWVYKEYGN--SQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQ   78 (255)
Q Consensus         1 mka~v~~~~~~--~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~   78 (255)
                      ||||++..+++  . +.++++ +.+.|.+.++|++||+.++++|++|+....|.++.. ..+|.++|||++|+|+.+|++
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~-~~~p~~~g~e~~G~v~~vG~~   78 (329)
T cd08250           2 FRKLVVHRLSPNFR-EATSIV-DVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPG-VKPPFDCGFEGVGEVVAVGEG   78 (329)
T ss_pred             ceEEEeccCCCCcc-cCceEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCC-CCCCcccCceeEEEEEEECCC
Confidence            99999999887  5 567888 789999999999999999999999999888876422 457889999999999999999


Q ss_pred             CCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEE
Q 025278           79 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVL  157 (255)
Q Consensus        79 v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~  157 (255)
                      +.++++||+|++..          .|+|++|+.++.+.++++|+..  .+++.+++++.+||+++. ..++++|++|+|+
T Consensus        79 v~~~~~Gd~V~~~~----------~g~~~s~~~v~~~~~~~ip~~~--~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~  146 (329)
T cd08250          79 VTDFKVGDAVATMS----------FGAFAEYQVVPARHAVPVPELK--PEVLPLLVSGLTASIALEEVGEMKSGETVLVT  146 (329)
T ss_pred             CCCCCCCCEEEEec----------CcceeEEEEechHHeEECCCCc--chhhhcccHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            99999999999864          5899999999999999999973  466778889999999984 5789999999999


Q ss_pred             cCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc-----cCCCccEEEECCCCccceeeee
Q 025278          158 GGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED-----LPEKFDVVFDAVGKMCISIVYQ  232 (255)
Q Consensus       158 ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-----~~~~~d~vid~~G~~~~~~~~~  232 (255)
                      |++|.+|++++++|+.. |.+++++++++++.+.++++|++.+++....++.+     ..+++|++||++|+. ....+.
T Consensus       147 ga~g~ig~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g~~-~~~~~~  224 (329)
T cd08250         147 AAAGGTGQFAVQLAKLA-GCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVGGE-MFDTCV  224 (329)
T ss_pred             eCccHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECCcHH-HHHHHH
Confidence            99999999999999995 99999999999999999999998888776544322     125799999999974 445556


Q ss_pred             eccccCCceEEEEeecc
Q 025278          233 KCDKFQEKSLINFGLFR  249 (255)
Q Consensus       233 ~~~~~~~G~~v~~G~~~  249 (255)
                      +.++ .+|+++.+|...
T Consensus       225 ~~l~-~~g~~v~~g~~~  240 (329)
T cd08250         225 DNLA-LKGRLIVIGFIS  240 (329)
T ss_pred             HHhc-cCCeEEEEeccc
Confidence            6666 689999999765

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=100.00  E-value=2e-33  Score=242.34  Aligned_cols=240  Identities=36%  Similarity=0.505  Sum_probs=199.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++.++ + ..++++ +.+.|+|+++||+||+.++++|++|+....+.+   ....|.++|||++|+|+.+|++++
T Consensus         1 m~a~~~~~~~-~-~~~~~~-~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~---~~~~~~~~g~e~~G~v~~vG~~v~   74 (339)
T cd08249           1 QKAAVLTGPG-G-GLLVVV-DVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF---IPSYPAILGCDFAGTVVEVGSGVT   74 (339)
T ss_pred             CceEEeccCC-C-Cccccc-CCCCCCCCCCEEEEEEEEEEcCchheeeeeccc---ccCCCceeeeeeeEEEEEeCCCcC
Confidence            9999999996 3 456888 899999999999999999999999988775543   123467899999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcc----------cC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSA----------FS  149 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~----------~~  149 (255)
                      .+++||+|++....... +...+|+|++|++++.+.++++|+++++++++.+++++.|||+++. ..+          +.
T Consensus        75 ~~~~Gd~V~~~~~~~~~-~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~  153 (339)
T cd08249          75 RFKVGDRVAGFVHGGNP-NDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPAS  153 (339)
T ss_pred             cCCCCCEEEEEeccccC-CCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCC
Confidence            99999999987531111 2224689999999999999999999999999999999999999984 343          37


Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc-----CCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL-----PEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-----~~~~d~vid~~G~  224 (255)
                      ++++|+|+|++|.+|++++++|+++ |++++.++ +++|++.++++|+++++++.+.++.+.     .+++|++||++|+
T Consensus       154 ~~~~vlI~ga~g~vg~~~~~~a~~~-G~~v~~~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~  231 (339)
T cd08249         154 KGKPVLIWGGSSSVGTLAIQLAKLA-GYKVITTA-SPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCIST  231 (339)
T ss_pred             CCCEEEEEcChhHHHHHHHHHHHHc-CCeEEEEE-CcccHHHHHhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeecc
Confidence            8999999998899999999999995 99998877 568999999999999998876543321     3579999999998


Q ss_pred             ccceeeeeeccccC--CceEEEEeeccC
Q 025278          225 MCISIVYQKCDKFQ--EKSLINFGLFRQ  250 (255)
Q Consensus       225 ~~~~~~~~~~~~~~--~G~~v~~G~~~~  250 (255)
                      +.....+.++++ .  +|+++.+|....
T Consensus       232 ~~~~~~~~~~l~-~~~~g~~v~~g~~~~  258 (339)
T cd08249         232 PESAQLCAEALG-RSGGGKLVSLLPVPE  258 (339)
T ss_pred             chHHHHHHHHHh-ccCCCEEEEecCCCc
Confidence            566667777777 7  899999987654

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=6.3e-33  Score=241.41  Aligned_cols=239  Identities=29%  Similarity=0.398  Sum_probs=200.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..++..   ++++ +.+.|++.++||+||+.++++|+.|+..+.|.++   ..+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~---~~~~-~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v~   73 (363)
T cd08279           1 MRAAVLHEVGKP---LEIE-EVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP---APLPAVLGHEGAGVVEEVGPGVT   73 (363)
T ss_pred             CeEEEEecCCCC---ceEE-EeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC---CCCCccccccceEEEEEeCCCcc
Confidence            999999988755   6888 7899999999999999999999999999988764   34577899999999999999999


Q ss_pred             CCCCCCEEEeccCcc--------------ccCC------------------------CCCCcceeeEEeeeCCceEeCCC
Q 025278           81 KFKVGDEVYGDINEK--------------ALDH------------------------PKRNGSLAEYTAVEENLLALKPK  122 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~--------------~~~~------------------------~~~~g~~~~~~~~~~~~~~~lp~  122 (255)
                      .+++||+|++.....              +..+                        ....|+|++|+.++.+.++++|+
T Consensus        74 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~  153 (363)
T cd08279          74 GVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDD  153 (363)
T ss_pred             ccCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCC
Confidence            999999999852110              0000                        01358999999999999999999


Q ss_pred             CCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEE
Q 025278          123 NLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLA  200 (255)
Q Consensus       123 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v  200 (255)
                      ++++++++.++++..+||+++ +...+.++++|+|+| +|++|++++++|+.+ |.+ ++++++++++.+.++++|++++
T Consensus       154 ~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g-~g~vG~a~i~lak~~-G~~~Vi~~~~~~~~~~~~~~~g~~~v  231 (363)
T cd08279         154 DIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIG-CGGVGLNAIQGARIA-GASRIIAVDPVPEKLELARRFGATHT  231 (363)
T ss_pred             CCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHhCCeEE
Confidence            999999999999999999987 567899999999996 799999999999996 886 8888999999999999999999


Q ss_pred             EcCCCccccc----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          201 IDYTKENIED----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       201 ~~~~~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ++++..++..    .  .+++|++||++|+......+.+.++ .+|+++.+|...
T Consensus       232 v~~~~~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~-~~G~~v~~g~~~  285 (363)
T cd08279         232 VNASEDDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTR-KGGTAVVVGMGP  285 (363)
T ss_pred             eCCCCccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhh-cCCeEEEEecCC
Confidence            9876644322    1  3579999999997655566667776 789999998754

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.3e-32  Score=236.18  Aligned_cols=239  Identities=29%  Similarity=0.373  Sum_probs=200.0

Q ss_pred             CeEEEEcccCCCc-cceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQ-SVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~-~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++.+++.+. ..++++ +.+.|.+.++||+||+.++++|++|+..+.|.++.  ...|.++|||++|+|+++|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~vG~~v   77 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLT-EVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP--PKLPLIPGHEIVGRVEAVGPGV   77 (329)
T ss_pred             CeEEEEecCCCCCCCCceEE-eccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC--CCCCccccccccEEEEEECCCC
Confidence            8999999888421 236787 77888899999999999999999999999887643  3557899999999999999999


Q ss_pred             CCCCCCCEEEeccC-----c--------------cccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHH
Q 025278           80 KKFKVGDEVYGDIN-----E--------------KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY  140 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~-----~--------------~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~  140 (255)
                      .++++||+|+..+.     +              ....+....|+|++|+.++...++++|+++++.+++.+++++.|||
T Consensus        78 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~  157 (329)
T cd08298          78 TRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGY  157 (329)
T ss_pred             CCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHH
Confidence            99999999986311     0              0001122368999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEE
Q 025278          141 EGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFD  220 (255)
Q Consensus       141 ~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid  220 (255)
                      ++++..+++++++|+|+| +|++|+++++++++. |.+++++++++++++.++++|++.+++....    ..+++|++++
T Consensus       158 ~~~~~~~~~~~~~vlV~g-~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~vD~vi~  231 (329)
T cd08298         158 RALKLAGLKPGQRLGLYG-FGASAHLALQIARYQ-GAEVFAFTRSGEHQELARELGADWAGDSDDL----PPEPLDAAII  231 (329)
T ss_pred             HHHHhhCCCCCCEEEEEC-CcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHhCCcEEeccCcc----CCCcccEEEE
Confidence            999888999999999997 899999999999995 8999999999999999999999888876543    1347999999


Q ss_pred             CCCCccceeeeeeccccCCceEEEEeecc
Q 025278          221 AVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       221 ~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +++.......+.+.++ .+|+++.+|...
T Consensus       232 ~~~~~~~~~~~~~~l~-~~G~~v~~g~~~  259 (329)
T cd08298         232 FAPVGALVPAALRAVK-KGGRVVLAGIHM  259 (329)
T ss_pred             cCCcHHHHHHHHHHhh-cCCEEEEEcCCC
Confidence            9876666666677777 789999988643

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=5.4e-33  Score=240.60  Aligned_cols=243  Identities=26%  Similarity=0.354  Sum_probs=200.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC----------CCCCCCcccccceEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA----------TDSPLPTIPGYDVAG   70 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~----------~~~~~p~~~G~e~~G   70 (255)
                      |||+++..++..   ++++ +.|.|++.++||+||+.++++|++|+..+.|.++.          ...+.|.++|||++|
T Consensus         1 ~~a~~~~~~~~~---~~~~-~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G   76 (350)
T cd08240           1 MKAAAVVEPGKP---LEEV-EIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVG   76 (350)
T ss_pred             CeeEEeccCCCC---ceEE-ecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeE
Confidence            999999988765   6888 89999999999999999999999999999886531          123456789999999


Q ss_pred             EEEEeCCCCCCCCCCCEEEeccCcccc------------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhcc
Q 025278           71 VVEKVGSQVKKFKVGDEVYGDINEKAL------------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL  132 (255)
Q Consensus        71 ~V~~~G~~v~~~~~Gd~V~~~~~~~~~------------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l  132 (255)
                      +|+++|++++++++||+|++.+...+.                  .+....|+|++|+.++...++++|+++++.+++.+
T Consensus        77 ~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l  156 (350)
T cd08240          77 EVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATL  156 (350)
T ss_pred             EEEeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehh
Confidence            999999999999999999886321000                  00113689999999999999999999999999999


Q ss_pred             chhHHHHHHHHHh-cccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCccccc
Q 025278          133 PLATETAYEGLER-SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIED  210 (255)
Q Consensus       133 ~~~~~ta~~~l~~-~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  210 (255)
                      ++.++|||++++. ...+++++|+|+| +|++|++++|+|+.+ |+ ++++++.+++|.+.++++|++.++++++..+.+
T Consensus       157 ~~~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  234 (350)
T cd08240         157 ACSGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKAL-GPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAK  234 (350)
T ss_pred             hchhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHH
Confidence            9999999999964 4456899999997 899999999999996 87 678888999999999999998888876544321


Q ss_pred             ----c-CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          211 ----L-PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       211 ----~-~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                          . .+++|++||++|.......+.+.++ .+|+++.+|..++
T Consensus       235 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~-~~g~~v~~g~~~~  278 (350)
T cd08240         235 RIIKAAGGGVDAVIDFVNNSATASLAFDILA-KGGKLVLVGLFGG  278 (350)
T ss_pred             HHHHHhCCCCcEEEECCCCHHHHHHHHHHhh-cCCeEEEECCCCC
Confidence                1 2379999999997666666677777 7899999987654

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=8.8e-33  Score=243.26  Aligned_cols=246  Identities=33%  Similarity=0.448  Sum_probs=197.7

Q ss_pred             CeEEEEcc--cCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC--------CCCCCC-cccccceE
Q 025278            1 MKAWVYKE--YGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA--------TDSPLP-TIPGYDVA   69 (255)
Q Consensus         1 mka~v~~~--~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~--------~~~~~p-~~~G~e~~   69 (255)
                      ||||++..  ++++.+.+++. +.+.|.|.++||+||+.++++|++|++...+....        .....| .++|||++
T Consensus         8 ~~a~~~~~~~~~~~~~~~~~~-~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~~   86 (398)
T TIGR01751         8 MYAFAIREERDGDPRQAIQLE-VVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDAS   86 (398)
T ss_pred             hhheEEecccCCCcccceEEe-ecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccceE
Confidence            89999965  67654668898 89999999999999999999999998876553210        001223 37999999


Q ss_pred             EEEEEeCCCCCCCCCCCEEEeccCcccc------------------CC-CCCCcceeeEEeeeCCceEeCCCCCCHHhhh
Q 025278           70 GVVEKVGSQVKKFKVGDEVYGDINEKAL------------------DH-PKRNGSLAEYTAVEENLLALKPKNLSFVEAA  130 (255)
Q Consensus        70 G~V~~~G~~v~~~~~Gd~V~~~~~~~~~------------------~~-~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa  130 (255)
                      |+|+++|++++.+++||+|++.+...+.                  .+ ....|+|+||+.++...++++|+++++++++
T Consensus        87 G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~aa  166 (398)
T TIGR01751        87 GVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAA  166 (398)
T ss_pred             EEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHHh
Confidence            9999999999999999999886421000                  00 1135899999999999999999999999999


Q ss_pred             ccchhHHHHHHHHH---hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc
Q 025278          131 SLPLATETAYEGLE---RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN  207 (255)
Q Consensus       131 ~l~~~~~ta~~~l~---~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~  207 (255)
                      .++++..+||+++.   ..++.+|++|+|+|++|++|++++++|+++ |++++++++++++.+.++++|++.++|+.+.+
T Consensus       167 ~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~-G~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~  245 (398)
T TIGR01751       167 CPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAG-GGNPVAVVSSPEKAEYCRELGAEAVIDRNDFG  245 (398)
T ss_pred             hccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcCCCEEecCCCcc
Confidence            99999999999984   367899999999998899999999999995 99999999999999999999999999875431


Q ss_pred             ----------------------ccc----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          208 ----------------------IED----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       208 ----------------------~~~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                                            +.+    .  .+++|++|||+|.. ....+..+++ .+|+++.+|....
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~-~~~~~~~~l~-~~G~~v~~g~~~~  314 (398)
T TIGR01751       246 HWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRA-TFPTSVFVCR-RGGMVVICGGTTG  314 (398)
T ss_pred             hhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHH-HHHHHHHhhc-cCCEEEEEccccC
Confidence                                  000    1  24699999999964 3455677776 6899999998654

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=9e-33  Score=238.11  Aligned_cols=240  Identities=28%  Similarity=0.368  Sum_probs=200.4

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      |+|+.+.+++.   ++++ +.+.|+|.++||+||+.++++|++|++.+.|.++  ..++|.++|||++|+|+++|+++++
T Consensus         1 ~~~~~~~~~~~---~~~~-~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~--~~~~p~~~g~e~~G~V~~vG~~v~~   74 (337)
T cd05283           1 KGYAARDASGK---LEPF-TFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWG--PTKYPLVPGHEIVGIVVAVGSKVTK   74 (337)
T ss_pred             CceEEecCCCC---ceEE-eccCCCCCCCeEEEEEEEecccchHHHHhcCCcC--CCCCCcccCcceeeEEEEECCCCcc
Confidence            67888877744   7888 8999999999999999999999999999988763  3456889999999999999999999


Q ss_pred             CCCCCEEEeccC-----c----------cc-----------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchh
Q 025278           82 FKVGDEVYGDIN-----E----------KA-----------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLA  135 (255)
Q Consensus        82 ~~~Gd~V~~~~~-----~----------~~-----------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~  135 (255)
                      +++||+|+..+.     .          .+           ..+....|+|+||+.++.+.++++|+++++++++.+++.
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~  154 (337)
T cd05283          75 FKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCA  154 (337)
T ss_pred             cCCCCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhH
Confidence            999999973210     0          00           001133689999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccc-cccCCC
Q 025278          136 TETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENI-EDLPEK  214 (255)
Q Consensus       136 ~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~~~  214 (255)
                      ..+||++++...+++|++++|.| +|++|++++++|+.+ |.+++.++++++++++++++|++.+++....+. ....++
T Consensus       155 ~~ta~~~~~~~~~~~g~~vlV~g-~g~vG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~  232 (337)
T cd05283         155 GITVYSPLKRNGVGPGKRVGVVG-IGGLGHLAVKFAKAL-GAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGS  232 (337)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCC
Confidence            99999999777789999999987 899999999999996 899999999999999999999999988765433 222468


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +|++|||+|.......+.+.++ .+|+++.+|....
T Consensus       233 ~d~v~~~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  267 (337)
T cd05283         233 LDLIIDTVSASHDLDPYLSLLK-PGGTLVLVGAPEE  267 (337)
T ss_pred             ceEEEECCCCcchHHHHHHHhc-CCCEEEEEeccCC
Confidence            9999999998754455567776 7899999997654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=6.5e-33  Score=241.47  Aligned_cols=239  Identities=28%  Similarity=0.369  Sum_probs=196.6

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      ||+++.+++..   ++++ +.+.|++.++||+||+.++++|++|++.+.+.++   ..+|.++|||++|+|+++|++++.
T Consensus         2 ~a~~~~~~~~~---~~~~-~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~---~~~~~i~g~e~~G~V~~vG~~v~~   74 (365)
T cd05279           2 KAAVLWEKGKP---LSIE-EIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP---TPLPVILGHEGAGIVESIGPGVTT   74 (365)
T ss_pred             ceeEEecCCCC---cEEE-EeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC---CCCCcccccceeEEEEEeCCCccc
Confidence            78888877754   6888 8999999999999999999999999999988753   345789999999999999999999


Q ss_pred             CCCCCEEEeccCcccc---------------------------------------CCCCCCcceeeEEeeeCCceEeCCC
Q 025278           82 FKVGDEVYGDINEKAL---------------------------------------DHPKRNGSLAEYTAVEENLLALKPK  122 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~---------------------------------------~~~~~~g~~~~~~~~~~~~~~~lp~  122 (255)
                      +++||+|++.+...+.                                       .+....|+|++|+.++.+.++++|+
T Consensus        75 ~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~  154 (365)
T cd05279          75 LKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDP  154 (365)
T ss_pred             CCCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCC
Confidence            9999999986321000                                       0001247899999999999999999


Q ss_pred             CCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEE
Q 025278          123 NLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLA  200 (255)
Q Consensus       123 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v  200 (255)
                      ++++++++.+++++.++|+++ +...+++|++|+|+| +|++|++++++|+.+ |.+ +++++++++|++.++++|++++
T Consensus       155 ~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~a~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~  232 (365)
T cd05279         155 DAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSVIMGCKAA-GASRIIAVDINKDKFEKAKQLGATEC  232 (365)
T ss_pred             CCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHhCCCee
Confidence            999999999998999999987 568899999999997 799999999999996 776 6677789999999999999999


Q ss_pred             EcCCCc--cccc-----cCCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          201 IDYTKE--NIED-----LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       201 ~~~~~~--~~~~-----~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +++.+.  ++.+     ..+++|++||++|.......+.+.+++.+|+++.+|...
T Consensus       233 v~~~~~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  288 (365)
T cd05279         233 INPRDQDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPP  288 (365)
T ss_pred             cccccccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCC
Confidence            987654  3221     135799999999975555556666654679999998753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=8.7e-33  Score=238.83  Aligned_cols=241  Identities=30%  Similarity=0.429  Sum_probs=201.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||||++..++.+   ++++ +.+.|.+.++||+||+.++++|++|+....|..+.  ..+|.++|||++|+|+.+|++++
T Consensus         1 m~a~~~~~~~~~---~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~~G~~~~   74 (345)
T cd08260           1 MRAAVYEEFGEP---LEIR-EVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD--VTLPHVPGHEFAGVVVEVGEDVS   74 (345)
T ss_pred             CeeEEEecCCCC---cEEE-EccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC--CCCCeeeccceeEEEEEECCCCc
Confidence            999999988765   6888 78989999999999999999999999998887542  35578999999999999999999


Q ss_pred             CCCCCCEEEeccCcc------------------ccCCCCCCcceeeEEeeeCC--ceEeCCCCCCHHhhhccchhHHHHH
Q 025278           81 KFKVGDEVYGDINEK------------------ALDHPKRNGSLAEYTAVEEN--LLALKPKNLSFVEAASLPLATETAY  140 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~------------------~~~~~~~~g~~~~~~~~~~~--~~~~lp~~~~~~~aa~l~~~~~ta~  140 (255)
                      .+++||+|++.....                  ...+....|+|++|+.++..  .++++|++++.++++.++++.+|||
T Consensus        75 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~  154 (345)
T cd08260          75 RWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAF  154 (345)
T ss_pred             cCCCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHH
Confidence            999999998721100                  00112236899999999975  8999999999999999999999999


Q ss_pred             HHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCC-ccccc----c-CC
Q 025278          141 EGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK-ENIED----L-PE  213 (255)
Q Consensus       141 ~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~----~-~~  213 (255)
                      +++ +..++.++++|+|+| +|++|++++++|+.+ |.+++++++++++.+.++++|++.++++.. .++.+    . .+
T Consensus       155 ~~l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~  232 (345)
T cd08260         155 RALVHQARVKPGEWVAVHG-CGGVGLSAVMIASAL-GARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGG  232 (345)
T ss_pred             HHHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCC
Confidence            998 567889999999999 899999999999995 999999999999999999999999998876 44322    1 12


Q ss_pred             CccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          214 KFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       214 ~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++|++||++|+......+.+.++ .+|+++.+|....
T Consensus       233 ~~d~vi~~~g~~~~~~~~~~~l~-~~g~~i~~g~~~~  268 (345)
T cd08260         233 GAHVSVDALGIPETCRNSVASLR-KRGRHVQVGLTLG  268 (345)
T ss_pred             CCCEEEEcCCCHHHHHHHHHHhh-cCCEEEEeCCcCC
Confidence            79999999997555556677777 7899999997653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7.7e-33  Score=241.19  Aligned_cols=239  Identities=33%  Similarity=0.461  Sum_probs=199.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||||++..++..   ++++ +.+.|.+.++||+||+.++++|++|+....+.++   ..+|.++|||++|+|+.+|++++
T Consensus         1 ~~a~~~~~~~~~---~~~~-~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~---~~~p~~~g~e~~G~v~~vG~~~~   73 (367)
T cd08263           1 MKAAVLKGPNPP---LTIE-EIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP---FPPPFVLGHEISGEVVEVGPNVE   73 (367)
T ss_pred             CeeEEEecCCCC---cEEE-EeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCC---CCCCcccccccceEEEEeCCCCC
Confidence            999999988654   6787 7899999999999999999999999999888764   25678999999999999999998


Q ss_pred             C---CCCCCEEEeccCccc--------------cCC--------------------------CCCCcceeeEEeeeCCce
Q 025278           81 K---FKVGDEVYGDINEKA--------------LDH--------------------------PKRNGSLAEYTAVEENLL  117 (255)
Q Consensus        81 ~---~~~Gd~V~~~~~~~~--------------~~~--------------------------~~~~g~~~~~~~~~~~~~  117 (255)
                      +   +++||+|++.+...+              ..+                          ....|+|++|+.++.+.+
T Consensus        74 ~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  153 (367)
T cd08263          74 NPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATAL  153 (367)
T ss_pred             CCCcCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhE
Confidence            8   999999998421100              000                          013589999999999999


Q ss_pred             EeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHc
Q 025278          118 ALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSL  195 (255)
Q Consensus       118 ~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~  195 (255)
                      +++|+++++.+++.++++++|||+++. ...+.++++|+|+| +|++|++++++|+.+ |.+ +++++.++++.+.++++
T Consensus       154 ~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~-G~~~vi~~~~s~~~~~~~~~~  231 (367)
T cd08263         154 APLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAF-GASPIIAVDVRDEKLAKAKEL  231 (367)
T ss_pred             EECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHh
Confidence            999999999999999999999999984 46778999999996 899999999999995 888 88888999999999999


Q ss_pred             CCCEEEcCCCccccc----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          196 GADLAIDYTKENIED----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       196 g~~~v~~~~~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      |++.+++++..++.+    .  .+++|++||++|+......+.++++ .+|+++.+|...
T Consensus       232 g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~-~~G~~v~~g~~~  290 (367)
T cd08263         232 GATHTVNAAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVR-DGGRAVVVGLAP  290 (367)
T ss_pred             CCceEecCCcccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHh-cCCEEEEEccCC
Confidence            999999887655432    1  2479999999998634455567776 789999998654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.3e-32  Score=235.16  Aligned_cols=229  Identities=25%  Similarity=0.359  Sum_probs=188.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++.++++    ++++ +.+.|++.++||+||+.++++|++|+....|.++     .|.++|||++|+|+++|++  
T Consensus         1 ~~a~~~~~~~~----~~~~-~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~-----~~~~~G~e~~G~Vv~~G~~--   68 (319)
T cd08242           1 MKALVLDGGLD----LRVE-DLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP-----FPGVPGHEFVGIVEEGPEA--   68 (319)
T ss_pred             CeeEEEeCCCc----EEEE-ECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC-----CCCccCceEEEEEEEeCCC--
Confidence            89999997654    5898 8999999999999999999999999999888653     5788999999999999998  


Q ss_pred             CCCCCCEEEeccCc------------------cccCCC-CCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDINE------------------KALDHP-KRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~------------------~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                       +++||||......                  ....+. ...|+|++|++++.+.++++|++++.++++.+ ....++|.
T Consensus        69 -~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~  146 (319)
T cd08242          69 -ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALE  146 (319)
T ss_pred             -CCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHH
Confidence             6799999753221                  001111 23689999999999999999999998887753 34446777


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEEC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      +++..+++++++|+|+| +|.+|++++|+|+.+ |.++++++.+++++++++++|++.++++...   ...+++|++|||
T Consensus       147 ~~~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~d~vid~  221 (319)
T cd08242         147 ILEQVPITPGDKVAVLG-DGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRLGVETVLPDEAE---SEGGGFDVVVEA  221 (319)
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcCCcEEeCcccc---ccCCCCCEEEEC
Confidence            77788899999999997 899999999999996 9999999999999999999999988877542   123579999999


Q ss_pred             CCCccceeeeeeccccCCceEEEEeecc
Q 025278          222 VGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       222 ~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +|+......+.++++ .+|+++.+|...
T Consensus       222 ~g~~~~~~~~~~~l~-~~g~~v~~~~~~  248 (319)
T cd08242         222 TGSPSGLELALRLVR-PRGTVVLKSTYA  248 (319)
T ss_pred             CCChHHHHHHHHHhh-cCCEEEEEcccC
Confidence            998665666666776 689999877654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=1.8e-32  Score=235.70  Aligned_cols=242  Identities=33%  Similarity=0.472  Sum_probs=203.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++++..++++ . +.++ +.+.|.+.+++|+||+.++++|+.|+....|.++ ...+.|.++|+|++|+|+.+|++++
T Consensus         1 ~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~-~~~~~~~~~g~~~~G~v~~~G~~v~   76 (338)
T cd08254           1 MKAWRFHKGSKG-L-LVLE-EVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVP-TLTKLPLTLGHEIAGTVVEVGAGVT   76 (338)
T ss_pred             CeeEEEecCCCC-c-eEEe-ccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCc-ccCCCCEeccccccEEEEEECCCCc
Confidence            999999999887 4 6777 7888999999999999999999999999988765 2345578899999999999999999


Q ss_pred             CCCCCCEEEeccCc------------------cccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           81 KFKVGDEVYGDINE------------------KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      ++++||+|++.+..                  ....+....|+|++|+.++.+.++++|++++.++++.++.+++|||++
T Consensus        77 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~  156 (338)
T cd08254          77 NFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHA  156 (338)
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHH
Confidence            99999999873210                  001122235899999999999999999999999999999999999999


Q ss_pred             HH-hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc-----cCCCcc
Q 025278          143 LE-RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED-----LPEKFD  216 (255)
Q Consensus       143 l~-~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-----~~~~~d  216 (255)
                      +. ...++++++|+|.| +|++|++++++|+.+ |.+++++++++++.+.++++|.+++++..+....+     ..+++|
T Consensus       157 l~~~~~~~~~~~vli~g-~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D  234 (338)
T cd08254         157 VVRAGEVKPGETVLVIG-LGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFD  234 (338)
T ss_pred             HHhccCCCCCCEEEEEC-CcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCce
Confidence            85 56799999999986 799999999999995 89999999999999999999999988876544322     134799


Q ss_pred             EEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          217 VVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       217 ~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ++|||+|.......+.+.++ ++|+++.+|...
T Consensus       235 ~vid~~g~~~~~~~~~~~l~-~~G~~v~~g~~~  266 (338)
T cd08254         235 VIFDFVGTQPTFEDAQKAVK-PGGRIVVVGLGR  266 (338)
T ss_pred             EEEECCCCHHHHHHHHHHhh-cCCEEEEECCCC
Confidence            99999997766666777777 789999998754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=1e-32  Score=238.21  Aligned_cols=237  Identities=28%  Similarity=0.383  Sum_probs=195.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCC-CCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~-~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++..++.    ++++ +.+.|+|. ++||+||+.++++|+.|+....|.++   ..+|.++|||++|+|+++|+++
T Consensus         1 ~~a~~~~~~~~----~~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v   72 (344)
T cd08284           1 MKAVVFKGPGD----VRVE-EVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP---STPGFVLGHEFVGEVVEVGPEV   72 (344)
T ss_pred             CeeEEEecCCC----ceEE-eccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC---CCCCcccccceEEEEEeeCCCc
Confidence            99999987654    5888 89999885 99999999999999999999888764   3457889999999999999999


Q ss_pred             CCCCCCCEEEeccCcccc----------------------CCCCCCcceeeEEeeeCC--ceEeCCCCCCHHhhhccchh
Q 025278           80 KKFKVGDEVYGDINEKAL----------------------DHPKRNGSLAEYTAVEEN--LLALKPKNLSFVEAASLPLA  135 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~----------------------~~~~~~g~~~~~~~~~~~--~~~~lp~~~~~~~aa~l~~~  135 (255)
                      +++++||+|++.+...+.                      ......|+|++|+.++.+  .++++|+++++++++.++++
T Consensus        73 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~  152 (344)
T cd08284          73 RTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDI  152 (344)
T ss_pred             cccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCc
Confidence            999999999986421100                      001125899999999865  99999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCccccc----
Q 025278          136 TETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIED----  210 (255)
Q Consensus       136 ~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----  210 (255)
                      ++|||+++....+.++++|+|+| +|++|++++++|+.+ |+ ++++++.+++|.+.++++|+. .++.+..++..    
T Consensus       153 ~~ta~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~-g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~  229 (344)
T cd08284         153 LPTGYFGAKRAQVRPGDTVAVIG-CGPVGLCAVLSAQVL-GAARVFAVDPVPERLERAAALGAE-PINFEDAEPVERVRE  229 (344)
T ss_pred             hHHHHhhhHhcCCccCCEEEEEC-CcHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHHHhCCe-EEecCCcCHHHHHHH
Confidence            99999999778889999999997 899999999999995 86 788888888999999999975 45655443321    


Q ss_pred             c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          211 L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       211 ~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .  .+++|++||++|+......+.+.++ .+|+++.+|...
T Consensus       230 ~~~~~~~dvvid~~~~~~~~~~~~~~l~-~~g~~v~~g~~~  269 (344)
T cd08284         230 ATEGRGADVVLEAVGGAAALDLAFDLVR-PGGVISSVGVHT  269 (344)
T ss_pred             HhCCCCCCEEEECCCCHHHHHHHHHhcc-cCCEEEEECcCC
Confidence            1  2479999999997666666677776 789999999765

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=2e-32  Score=239.20  Aligned_cols=237  Identities=27%  Similarity=0.350  Sum_probs=192.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCC-CCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSL-REDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~-~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      ||++++..+++    ++++ +.|.|++ .++||+||+.++++|++|++.+.|.++   ...|.++|||++|+|+++|+++
T Consensus         1 m~~~~~~~~~~----~~~~-~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~---~~~p~~~g~e~~G~V~~vG~~v   72 (375)
T cd08282           1 MKAVVYGGPGN----VAVE-DVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG---AEPGLVLGHEAMGEVEEVGSAV   72 (375)
T ss_pred             CceEEEecCCc----eeEE-eCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC---CCCCceeccccEEEEEEeCCCC
Confidence            89999987764    4888 8899986 799999999999999999999988764   3458899999999999999999


Q ss_pred             CCCCCCCEEEeccCccccC----------------------------CCCCCcceeeEEeeeCC--ceEeCCCCCCHH--
Q 025278           80 KKFKVGDEVYGDINEKALD----------------------------HPKRNGSLAEYTAVEEN--LLALKPKNLSFV--  127 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~~----------------------------~~~~~g~~~~~~~~~~~--~~~~lp~~~~~~--  127 (255)
                      ..+++||+|++.....+..                            ....+|+|+||+.++..  .++++|++++++  
T Consensus        73 ~~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~  152 (375)
T cd08282          73 ESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEK  152 (375)
T ss_pred             CcCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhh
Confidence            9999999998732210000                            01125899999999976  899999999988  


Q ss_pred             -hhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCC
Q 025278          128 -EAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTK  205 (255)
Q Consensus       128 -~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~  205 (255)
                       +++.++.+.+|+|+++....+++|++|+|.| +|++|++++|+|+++ |. ++++++++++|.+.++++|++ .+++.+
T Consensus       153 ~~~a~~~~~~~ta~~a~~~~~~~~g~~vlI~g-~g~vg~~~~~~a~~~-G~~~vi~~~~~~~~~~~~~~~g~~-~v~~~~  229 (375)
T cd08282         153 DDYLMLSDIFPTGWHGLELAGVQPGDTVAVFG-AGPVGLMAAYSAILR-GASRVYVVDHVPERLDLAESIGAI-PIDFSD  229 (375)
T ss_pred             hheeeecchHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCe-EeccCc
Confidence             4677788889999999778899999999977 799999999999996 76 788888999999999999984 566655


Q ss_pred             ccccc----c-CCCccEEEECCCCcc-----------ceeeeeeccccCCceEEEEeecc
Q 025278          206 ENIED----L-PEKFDVVFDAVGKMC-----------ISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       206 ~~~~~----~-~~~~d~vid~~G~~~-----------~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .++.+    . .+++|++|||+|+..           ....+.+.++ ++|+++.+|...
T Consensus       230 ~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~g~~~  288 (375)
T cd08282         230 GDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTR-PGGGIGIVGVYV  288 (375)
T ss_pred             ccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhh-cCcEEEEEeccC
Confidence            43221    1 246999999999763           2344466666 789999998764

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=2.3e-32  Score=235.93  Aligned_cols=239  Identities=30%  Similarity=0.419  Sum_probs=197.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.    ++++ +.+.|++.+++|+||+.++++|+.|+..+.|.++  ....|.++|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~----~~~~-~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~--~~~~~~~~g~~~~G~V~~~G~~v~   73 (343)
T cd08235           1 MKAAVLHGPND----VRLE-EVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT--DLKPPRILGHEIAGEIVEVGDGVT   73 (343)
T ss_pred             CeEEEEecCCc----eEEE-EccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc--cCCCCcccccceEEEEEeeCCCCC
Confidence            89999998774    4888 7898999999999999999999999999888653  234577899999999999999999


Q ss_pred             CCCCCCEEEeccCccc------------------cCCCCCCcceeeEEeeeCCc-----eEeCCCCCCHHhhhccchhHH
Q 025278           81 KFKVGDEVYGDINEKA------------------LDHPKRNGSLAEYTAVEENL-----LALKPKNLSFVEAASLPLATE  137 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~------------------~~~~~~~g~~~~~~~~~~~~-----~~~lp~~~~~~~aa~l~~~~~  137 (255)
                      .+++||+|++......                  ..+....|+|++|++++...     ++++|+++++.+++.+ +++.
T Consensus        74 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~  152 (343)
T cd08235          74 GFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLA  152 (343)
T ss_pred             CCCCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHH
Confidence            9999999998632100                  00112468999999999988     9999999999888765 7788


Q ss_pred             HHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCccccc----c-
Q 025278          138 TAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIED----L-  211 (255)
Q Consensus       138 ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~-  211 (255)
                      +||+++...++++|++|+|+| +|++|++++++|+.. |.+ ++++++++++.+.++++|.++++++++.++.+    . 
T Consensus       153 ~a~~~l~~~~~~~g~~VlV~g-~g~vg~~~~~la~~~-g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~  230 (343)
T cd08235         153 CCINAQRKAGIKPGDTVLVIG-AGPIGLLHAMLAKAS-GARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELT  230 (343)
T ss_pred             HHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHh
Confidence            999999767899999999997 799999999999995 888 88888999999999999999999887655432    1 


Q ss_pred             -CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 -PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 -~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                       .+++|++|||+|+......+.+.++ .+|+++.+|....
T Consensus       231 ~~~~vd~vld~~~~~~~~~~~~~~l~-~~g~~v~~~~~~~  269 (343)
T cd08235         231 DGRGADVVIVATGSPEAQAQALELVR-KGGRILFFGGLPK  269 (343)
T ss_pred             CCcCCCEEEECCCChHHHHHHHHHhh-cCCEEEEEeccCC
Confidence             2469999999997655555566676 6899999987543

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=100.00  E-value=2.2e-32  Score=235.20  Aligned_cols=236  Identities=36%  Similarity=0.490  Sum_probs=199.9

Q ss_pred             CeEEEEcccCCCcc--ceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCC
Q 025278            1 MKAWVYKEYGNSQS--VLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQ   78 (255)
Q Consensus         1 mka~v~~~~~~~~~--~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~   78 (255)
                      |||+++++++++.+  .++++ +.+.|++.+++|+||+.++++|++|+..+.+.++  ..+.|.++|||++|+|+++|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~   77 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDI-ELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAP--VPGQPKILGWDASGVVEAVGSE   77 (336)
T ss_pred             CceEEecCCCCCCcccceeEc-cCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCC--CCCCCcccccceEEEEEEcCCC
Confidence            89999999998721  46777 7888889999999999999999999998877654  2345778999999999999999


Q ss_pred             CCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCC-----CC
Q 025278           79 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSA-----GK  152 (255)
Q Consensus        79 v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~-----g~  152 (255)
                      +..+++||+|+....      ....|+|++|+.++...++++|++++.++++.+++++.++|+++ +...+.+     |+
T Consensus        78 v~~~~~Gd~V~~~~~------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~  151 (336)
T cd08252          78 VTLFKVGDEVYYAGD------ITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGK  151 (336)
T ss_pred             CCCCCCCCEEEEcCC------CCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCC
Confidence            999999999998531      01368999999999999999999999999999999999999997 5567776     99


Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c-CCCccEEEECCCCcc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L-PEKFDVVFDAVGKMC  226 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~-~~~~d~vid~~G~~~  226 (255)
                      +|+|+|++|++|++++++|+.+ | .+++++++++++.++++++|+++++++.. ++.+    . .+++|++||++|+..
T Consensus       152 ~vlV~g~~g~vg~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~i~~~~~~~~d~vl~~~~~~~  229 (336)
T cd08252         152 TLLIIGGAGGVGSIAIQLAKQL-TGLTVIATASRPESIAWVKELGADHVINHHQ-DLAEQLEALGIEPVDYIFCLTDTDQ  229 (336)
T ss_pred             EEEEEcCCchHHHHHHHHHHHc-CCcEEEEEcCChhhHHHHHhcCCcEEEeCCc-cHHHHHHhhCCCCCCEEEEccCcHH
Confidence            9999998999999999999996 7 99999999999999999999999988764 2211    1 247999999999765


Q ss_pred             ceeeeeeccccCCceEEEEeec
Q 025278          227 ISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       227 ~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ....+.+.++ .+|+++.+|..
T Consensus       230 ~~~~~~~~l~-~~g~~v~~g~~  250 (336)
T cd08252         230 HWDAMAELIA-PQGHICLIVDP  250 (336)
T ss_pred             HHHHHHHHhc-CCCEEEEecCC
Confidence            6666677776 68999999865

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.5e-32  Score=235.25  Aligned_cols=237  Identities=30%  Similarity=0.396  Sum_probs=196.4

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++.++.    +++. +.+.|++.++||+||+.++++|+.|+....+.++.  ...|.++|+|++|+|+.+|++++
T Consensus         1 ~~a~~~~~~~~----~~~~-~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~~~~~~g~e~~G~V~~~G~~v~   73 (337)
T cd08261           1 MKALVCEKPGR----LEVV-DIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF--ASYPRILGHELSGEVVEVGEGVA   73 (337)
T ss_pred             CeEEEEeCCCc----eEEE-ECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc--CCCCcccccccEEEEEEeCCCCC
Confidence            89999998764    4888 78999999999999999999999999998887643  24578899999999999999999


Q ss_pred             CCCCCCEEEeccCccc-------c-----------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           81 KFKVGDEVYGDINEKA-------L-----------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~-------~-----------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      .+++||+|++.....+       .           .+....|+|++|+.++.+ ++++|+++++++++.+ ..+++++++
T Consensus        74 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~  151 (337)
T cd08261          74 GLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHA  151 (337)
T ss_pred             CCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHH
Confidence            9999999997421100       0           001136899999999999 9999999999888776 566788888


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCcc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFD  216 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d  216 (255)
                      +...++++|++|||+| +|.+|++++|+|+.+ |.+++++++++++.++++++|+++++++...++.+.      .+++|
T Consensus       152 ~~~~~l~~g~~vLI~g-~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd  229 (337)
T cd08261         152 VRRAGVTAGDTVLVVG-AGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGAD  229 (337)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCC
Confidence            8778899999999997 799999999999996 999999999999999999999999998876543221      24699


Q ss_pred             EEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          217 VVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       217 ~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ++||++|+......+.+.++ .+|+++.+|...
T Consensus       230 ~vld~~g~~~~~~~~~~~l~-~~G~~i~~g~~~  261 (337)
T cd08261         230 VVIDATGNPASMEEAVELVA-HGGRVVLVGLSK  261 (337)
T ss_pred             EEEECCCCHHHHHHHHHHHh-cCCEEEEEcCCC
Confidence            99999987666666667776 789999998664

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=2.5e-32  Score=235.64  Aligned_cols=241  Identities=29%  Similarity=0.337  Sum_probs=191.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCC-CCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAF-SATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      ||++++..+++.   +++. +.|.|+|.++||+||++++++|++|+.++.+.. ......+|.++|||++|+|+++|+++
T Consensus         1 ~~~~~~~~~~~~---~~~~-~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v   76 (341)
T PRK05396          1 MKALVKLKAEPG---LWLT-DVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEV   76 (341)
T ss_pred             CceEEEecCCCc---eEEE-ECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCC
Confidence            999999887754   6888 889999999999999999999999999876532 11223467789999999999999999


Q ss_pred             CCCCCCCEEEeccCcccc------------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           80 KKFKVGDEVYGDINEKAL------------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~------------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      +.+++||+|++.....+.                  .+...+|+|++|+.++.+.++++|+++++++++.+ ..+.++++
T Consensus        77 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~  155 (341)
T PRK05396         77 TGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGNAVH  155 (341)
T ss_pred             CcCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHHHHHHH
Confidence            999999999986321110                  01124689999999999999999999998877644 45555666


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~  214 (255)
                      ++.. ...+|++|+|.| +|++|++++++|+++ |. ++++++.++++.++++++|+++++++++.++.+    .  .++
T Consensus       156 ~~~~-~~~~g~~vlV~~-~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~  232 (341)
T PRK05396        156 TALS-FDLVGEDVLITG-AGPIGIMAAAVAKHV-GARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEG  232 (341)
T ss_pred             HHHc-CCCCCCeEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCC
Confidence            5533 346899999987 799999999999995 87 577778888999999999999999887654322    1  257


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +|++|||+|+......+.++++ ++|+++.+|....
T Consensus       233 ~d~v~d~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  267 (341)
T PRK05396        233 FDVGLEMSGAPSAFRQMLDNMN-HGGRIAMLGIPPG  267 (341)
T ss_pred             CCEEEECCCCHHHHHHHHHHHh-cCCEEEEEecCCC
Confidence            9999999997666666677777 7899999997653

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=100.00  E-value=4.8e-32  Score=232.01  Aligned_cols=238  Identities=29%  Similarity=0.359  Sum_probs=197.0

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      ||++++..+.+ ++++++ +.|.|.+.++||+||+.++++|++|+..+.|.++. ....|.++|||++|+|+.  +++..
T Consensus         1 ~a~~~~~~~~~-~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~V~~--~~~~~   75 (323)
T TIGR02823         1 KALVVEKEDGK-VSAQVE-TLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGV-VRSYPMIPGIDAAGTVVS--SEDPR   75 (323)
T ss_pred             CeEEEccCCCC-cceeEe-ecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCC-CCCCCccceeeeEEEEEe--cCCCC
Confidence            78999988876 678999 89999999999999999999999999999887632 234588899999999998  56678


Q ss_pred             CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH---hcccCCCC-EEEEE
Q 025278           82 FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE---RSAFSAGK-SILVL  157 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~---~~~~~~g~-~VlI~  157 (255)
                      +++||+|++....   .+....|+|++|+.++.+.++++|+++++++++.++..+.++|.++.   ...+.+++ +|+|+
T Consensus        76 ~~~Gd~V~~~~~~---~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~  152 (323)
T TIGR02823        76 FREGDEVIVTGYG---LGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVT  152 (323)
T ss_pred             CCCCCEEEEccCC---CCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEE
Confidence            9999999986421   11223689999999999999999999999999999988888988763   34478898 99999


Q ss_pred             cCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccc--ccc-CCCccEEEECCCCccceeeeeec
Q 025278          158 GGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENI--EDL-PEKFDVVFDAVGKMCISIVYQKC  234 (255)
Q Consensus       158 ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~--~~~-~~~~d~vid~~G~~~~~~~~~~~  234 (255)
                      |++|++|++++++|+.+ |+++++++.++++.+.++++|++.+++..+.+.  ... ..++|+++||+|+.. ...+..+
T Consensus       153 g~~g~vg~~~~~la~~~-G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~-~~~~~~~  230 (323)
T TIGR02823       153 GATGGVGSLAVAILSKL-GYEVVASTGKAEEEDYLKELGASEVIDREDLSPPGKPLEKERWAGAVDTVGGHT-LANVLAQ  230 (323)
T ss_pred             cCCcHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHHhcCCCceEEEECccHHH-HHHHHHH
Confidence            98899999999999996 999999988888889999999998888754332  111 235999999999764 4556777


Q ss_pred             cccCCceEEEEeeccC
Q 025278          235 DKFQEKSLINFGLFRQ  250 (255)
Q Consensus       235 ~~~~~G~~v~~G~~~~  250 (255)
                      ++ .+|+++.+|..++
T Consensus       231 l~-~~G~~v~~g~~~~  245 (323)
T TIGR02823       231 LK-YGGAVAACGLAGG  245 (323)
T ss_pred             hC-CCCEEEEEcccCC
Confidence            77 7899999997643

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=2.9e-32  Score=235.52  Aligned_cols=239  Identities=25%  Similarity=0.272  Sum_probs=192.6

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCC-CCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSL-REDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~-~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      ||+++++++++.    +++ +.|.|+| .++||+||+.++++|++|+..+.|.++   ...|.++|||++|+|+++|+++
T Consensus         1 m~~~~~~~~~~~----~~~-~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v   72 (345)
T cd08287           1 MRATVIHGPGDI----RVE-EVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP---TRAPAPIGHEFVGVVEEVGSEV   72 (345)
T ss_pred             CceeEEecCCce----eEE-eCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC---CCCCcccccceEEEEEEeCCCC
Confidence            999999977654    888 7899986 899999999999999999998888764   2457899999999999999999


Q ss_pred             CCCCCCCEEEeccCc------------------cccCCCCCCcceeeEEeeeCC--ceEeCCCCCCHHhhh-----ccch
Q 025278           80 KKFKVGDEVYGDINE------------------KALDHPKRNGSLAEYTAVEEN--LLALKPKNLSFVEAA-----SLPL  134 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~~~~~~aa-----~l~~  134 (255)
                      ..+++||+|++....                  ....+...+|+|++|+.++.+  .++++|++++++.+.     ++..
T Consensus        73 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~  152 (345)
T cd08287          73 TSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSD  152 (345)
T ss_pred             CccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhc
Confidence            999999999872111                  001112345899999999975  999999999872211     2235


Q ss_pred             hHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCccccc---
Q 025278          135 ATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIED---  210 (255)
Q Consensus       135 ~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---  210 (255)
                      .+.+||+++....+++|++|+|.| +|++|++++++|+++ |.+ ++++++++++.+.++++|++.++++...++.+   
T Consensus       153 ~~~~a~~~~~~~~~~~g~~vlI~g-~g~vg~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~  230 (345)
T cd08287         153 VMGTGHHAAVSAGVRPGSTVVVVG-DGAVGLCAVLAAKRL-GAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVR  230 (345)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHH
Confidence            678899998778899999999977 899999999999996 886 67777888899999999999999987654322   


Q ss_pred             -c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          211 -L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       211 -~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                       .  .+++|+++|++|+......+.+.++ .+|+++.+|....
T Consensus       231 ~~~~~~~~d~il~~~g~~~~~~~~~~~l~-~~g~~v~~g~~~~  272 (345)
T cd08287         231 ELTGGVGADAVLECVGTQESMEQAIAIAR-PGGRVGYVGVPHG  272 (345)
T ss_pred             HhcCCCCCCEEEECCCCHHHHHHHHHhhc-cCCEEEEecccCC
Confidence             1  2479999999997666666777776 6899999987653

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=100.00  E-value=2.4e-32  Score=236.38  Aligned_cols=237  Identities=43%  Similarity=0.621  Sum_probs=196.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCC-CCCeEEEEEeEeecChHhHHHHcCCCCC-------------CCCCCCccccc
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSL-REDQVLIKVVAAALNPIDFKRMLGAFSA-------------TDSPLPTIPGY   66 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~-~~~eV~V~v~~~~i~~~D~~~~~g~~~~-------------~~~~~p~~~G~   66 (255)
                      |||+++++++++.+.++++ +++.|+| .++||+||++++++|++|+....|....             .....|.++||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~   79 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLE-NARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGR   79 (350)
T ss_pred             CceEEecccCCCcceeeec-ccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecc
Confidence            9999999888753457888 8999999 4999999999999999999988774210             02355889999


Q ss_pred             ceEEEEEEeCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-h
Q 025278           67 DVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-R  145 (255)
Q Consensus        67 e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~  145 (255)
                      |++|+|+++|++++++++||||++....      ...|+|++|+.++.+.++++|++++.++++.+++++.|+|+++. .
T Consensus        80 e~~G~v~~vG~~v~~~~~Gd~V~~~~~~------~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~  153 (350)
T cd08248          80 DCSGVVVDIGSGVKSFEIGDEVWGAVPP------WSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNV  153 (350)
T ss_pred             eeEEEEEecCCCcccCCCCCEEEEecCC------CCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHh
Confidence            9999999999999999999999986421      13589999999999999999999999999999999999999984 4


Q ss_pred             cccC----CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc---CCCccEE
Q 025278          146 SAFS----AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL---PEKFDVV  218 (255)
Q Consensus       146 ~~~~----~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~---~~~~d~v  218 (255)
                      ..+.    +|++|+|+|++|++|++++++|+.+ |+++++++++ ++.+.++++|.+.+++..+.++.+.   .+++|++
T Consensus       154 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~-G~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~vd~v  231 (350)
T cd08248         154 GGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAW-GAHVTTTCST-DAIPLVKSLGADDVIDYNNEDFEEELTERGKFDVI  231 (350)
T ss_pred             ccCCCccCCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCc-chHHHHHHhCCceEEECCChhHHHHHHhcCCCCEE
Confidence            5554    4999999998999999999999996 9998887755 6778889999988888765433221   2579999


Q ss_pred             EECCCCccceeeeeeccccCCceEEEEeec
Q 025278          219 FDAVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       219 id~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ||++|+. ....+.++++ ++|+++.+|..
T Consensus       232 i~~~g~~-~~~~~~~~l~-~~G~~v~~g~~  259 (350)
T cd08248         232 LDTVGGD-TEKWALKLLK-KGGTYVTLVSP  259 (350)
T ss_pred             EECCChH-HHHHHHHHhc-cCCEEEEecCC
Confidence            9999977 4555677777 78999999854

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-32  Score=235.69  Aligned_cols=239  Identities=32%  Similarity=0.428  Sum_probs=198.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++.+++.   ++++ +.+.|++.++|++||+.++++|++|+....|.++  ..++|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~---~~~~-~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~--~~~~~~~~g~e~~G~v~~~g~~~~   74 (334)
T PRK13771          1 MKAVILPGFKQG---YRIE-EVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYP--RMKYPVILGHEVVGTVEEVGENVK   74 (334)
T ss_pred             CeeEEEcCCCCC---cEEE-eCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCC--CCCCCeeccccceEEEEEeCCCCc
Confidence            999999998874   6888 7899999999999999999999999998888764  235578899999999999999998


Q ss_pred             CCCCCCEEEeccCccc------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           81 KFKVGDEVYGDINEKA------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      .+++||+|++.....+                  ..+....|+|++|+.++.+.++++|+++++.+++.+++++.++|++
T Consensus        75 ~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~  154 (334)
T PRK13771         75 GFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRG  154 (334)
T ss_pred             cCCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHH
Confidence            8999999998632100                  0111236899999999999999999999999999999999999999


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCc--cccccCCCccEEEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKE--NIEDLPEKFDVVFD  220 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~~~d~vid  220 (255)
                      +....++++++|+|+|++|.+|++++++|+.+ |.+++++++++++++.++++ +++++++.+.  ..... .++|++||
T Consensus       155 ~~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~-~~~d~~ld  231 (334)
T PRK13771        155 LRRAGVKKGETVLVTGAGGGVGIHAIQVAKAL-GAKVIAVTSSESKAKIVSKY-ADYVIVGSKFSEEVKKI-GGADIVIE  231 (334)
T ss_pred             HHhcCCCCCCEEEEECCCccHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH-HHHhcCchhHHHHHHhc-CCCcEEEE
Confidence            96668899999999998899999999999996 99999999999999999888 7777765411  11122 37999999


Q ss_pred             CCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          221 AVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       221 ~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |+|+.. ...+++.++ .+|+++.+|....
T Consensus       232 ~~g~~~-~~~~~~~l~-~~G~~v~~g~~~~  259 (334)
T PRK13771        232 TVGTPT-LEESLRSLN-MGGKIIQIGNVDP  259 (334)
T ss_pred             cCChHH-HHHHHHHHh-cCCEEEEEeccCC
Confidence            999754 455567777 7899999997543

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.2e-32  Score=232.26  Aligned_cols=240  Identities=35%  Similarity=0.428  Sum_probs=198.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..+++.   ++++ ++|.|++.++||+|++.++++|++|+..+.|.++.  ...|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~---~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~~G~~v~   74 (332)
T cd08259           1 MKAAILHKPNKP---LQIE-EVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR--GKYPLILGHEIVGTVEEVGEGVE   74 (332)
T ss_pred             CeEEEEecCCCc---eEEE-EccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC--CCCCeeccccceEEEEEECCCCc
Confidence            999999874433   6888 89999999999999999999999999999887642  34578999999999999999999


Q ss_pred             CCCCCCEEEeccCccc------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           81 KFKVGDEVYGDINEKA------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      .+++||+|++.....+                  ..+....|+|++|++++...++++|+++++++++.+++++.+||++
T Consensus        75 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~  154 (332)
T cd08259          75 RFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHA  154 (332)
T ss_pred             cCCCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHH
Confidence            9999999998642110                  0111236899999999999999999999999999999999999999


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCC--ccccccCCCccEEEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK--ENIEDLPEKFDVVFD  220 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~d~vid  220 (255)
                      ++...+.++++++|+|++|++|++++++++.. |.+++.+++++++.+.++++|.+.+++..+  ..+.. ..++|++||
T Consensus       155 l~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~v~~  232 (332)
T cd08259         155 LKRAGVKKGDTVLVTGAGGGVGIHAIQLAKAL-GARVIAVTRSPEKLKILKELGADYVIDGSKFSEDVKK-LGGADVVIE  232 (332)
T ss_pred             HHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHcCCcEEEecHHHHHHHHh-ccCCCEEEE
Confidence            97688899999999999999999999999995 999999999999999999899888887653  11111 237999999


Q ss_pred             CCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          221 AVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       221 ~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++|... ...+.+.++ .+|+++.+|....
T Consensus       233 ~~g~~~-~~~~~~~~~-~~g~~v~~g~~~~  260 (332)
T cd08259         233 LVGSPT-IEESLRSLN-KGGRLVLIGNVTP  260 (332)
T ss_pred             CCChHH-HHHHHHHhh-cCCEEEEEcCCCC
Confidence            999765 344455565 6899999987543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=4.1e-32  Score=234.40  Aligned_cols=238  Identities=29%  Similarity=0.425  Sum_probs=197.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.    ++++ +.+.|++.++||+||+.++++|+.|+....+.++   ...|.++|+|++|+|+.+|+++.
T Consensus         1 ~~a~~~~~~~~----l~~~-~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~---~~~~~~~g~~~~G~V~~~g~~v~   72 (343)
T cd08236           1 MKALVLTGPGD----LRYE-DIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA---YHPPLVLGHEFSGTVEEVGSGVD   72 (343)
T ss_pred             CeeEEEecCCc----eeEE-ecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC---CCCCcccCcceEEEEEEECCCCC
Confidence            99999998764    4787 7899999999999999999999999998877642   24577899999999999999999


Q ss_pred             CCCCCCEEEeccCcc------------------ccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           81 KFKVGDEVYGDINEK------------------ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~------------------~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      .+++||+|++.....                  ...+....|+|++|+.++.+.++++|+++++++++.+ ..+.+||++
T Consensus        73 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~  151 (343)
T cd08236          73 DLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHA  151 (343)
T ss_pred             cCCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHH
Confidence            999999999863110                  0011124689999999999999999999999888877 567899999


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCccccc---c--CCCcc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIED---L--PEKFD  216 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~--~~~~d  216 (255)
                      +....++++++|+|+| +|.+|++++++|+.+ |.+ ++++++++++.++++++|++.++++.+....+   .  .+++|
T Consensus       152 l~~~~~~~~~~vlI~g-~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d  229 (343)
T cd08236         152 VRLAGITLGDTVVVIG-AGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGAD  229 (343)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCC
Confidence            9877889999999997 799999999999996 887 88889899999999999999998876544211   1  23699


Q ss_pred             EEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          217 VVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       217 ~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++|||+|.......+.+.++ .+|+++.+|...+
T Consensus       230 ~vld~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  262 (343)
T cd08236         230 LVIEAAGSPATIEQALALAR-PGGKVVLVGIPYG  262 (343)
T ss_pred             EEEECCCCHHHHHHHHHHhh-cCCEEEEEcccCC
Confidence            99999987666666677777 7899999996643

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=7.2e-32  Score=230.00  Aligned_cols=236  Identities=30%  Similarity=0.395  Sum_probs=197.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++++..++.. ..++++ +.+.|++.++||+||+.++++|+.|+....+.++  ....|.++|||++|+|+++|+  .
T Consensus         1 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~--~   74 (320)
T cd08243           1 MKAIVIEQPGGP-EVLKLR-EIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSP--SVKFPRVLGIEAVGEVEEAPG--G   74 (320)
T ss_pred             CeEEEEcCCCCc-cceEEe-ecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC--CCCCCccccceeEEEEEEecC--C
Confidence            899999987765 567777 7777889999999999999999999999888653  234578899999999999995  5


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                      .+++||+|++.....   +....|+|++|+.++...++++|+++++++++.+++++.+||+++. ...+++|++|+|+|+
T Consensus        75 ~~~~Gd~V~~~~~~~---~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga  151 (320)
T cd08243          75 TFTPGQRVATAMGGM---GRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGG  151 (320)
T ss_pred             CCCCCCEEEEecCCC---CCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            799999999875321   1223589999999999999999999999999999999999999985 467899999999998


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc----ccCCCccEEEECCCCccceeeeeecc
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE----DLPEKFDVVFDAVGKMCISIVYQKCD  235 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~----~~~~~~d~vid~~G~~~~~~~~~~~~  235 (255)
                      +|++|++++++|+.+ |++++.++.++++.+.++++|++++++.. .++.    ...+++|++||++|+. ....+.+++
T Consensus       152 ~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~i~~~~~~~d~vl~~~~~~-~~~~~~~~l  228 (320)
T cd08243         152 TSSVGLAALKLAKAL-GATVTATTRSPERAALLKELGADEVVIDD-GAIAEQLRAAPGGFDKVLELVGTA-TLKDSLRHL  228 (320)
T ss_pred             CChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEEecC-ccHHHHHHHhCCCceEEEECCChH-HHHHHHHHh
Confidence            899999999999995 99999999999999999999998887542 2221    1235799999999974 445556777


Q ss_pred             ccCCceEEEEeecc
Q 025278          236 KFQEKSLINFGLFR  249 (255)
Q Consensus       236 ~~~~G~~v~~G~~~  249 (255)
                      + .+|+++.+|..+
T Consensus       229 ~-~~g~~v~~g~~~  241 (320)
T cd08243         229 R-PGGIVCMTGLLG  241 (320)
T ss_pred             c-cCCEEEEEccCC
Confidence            6 689999999753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=7.9e-32  Score=231.68  Aligned_cols=237  Identities=39%  Similarity=0.521  Sum_probs=196.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++.++++    ++++ +.+.|++.++||+||+.++++|+.|+....|.++.   .+|.++|+|++|+|+.+|++++
T Consensus         1 ~~a~~~~~~~~----~~~~-~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~---~~p~~~g~~~~G~v~~vG~~v~   72 (334)
T cd08234           1 MKALVYEGPGE----LEVE-EVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA---APPLVPGHEFAGVVVAVGSKVT   72 (334)
T ss_pred             CeeEEecCCCc----eEEE-eccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC---CCCcccccceEEEEEEeCCCCC
Confidence            99999998774    4888 88999999999999999999999999998887642   3678999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc------------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           81 KFKVGDEVYGDINEKAL------------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~------------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      ++++||+|++.....+.                  .+....|+|++|++++.+.++++|+++++.+++.+ ..+.+++++
T Consensus        73 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~  151 (334)
T cd08234          73 GFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHG  151 (334)
T ss_pred             CCCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHH
Confidence            99999999873221100                  11124689999999999999999999999888765 677789998


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCccccc----cCCCccE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIED----LPEKFDV  217 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~~~~~d~  217 (255)
                      ++..++++|++|+|+| +|.+|.+++++|+.. |++ ++++++++++.+.++++|++.++++.+.+...    ..+++|+
T Consensus       152 l~~~~~~~g~~vlI~g-~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~  229 (334)
T cd08234         152 LDLLGIKPGDSVLVFG-AGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDV  229 (334)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcE
Confidence            8778899999999997 799999999999995 887 78888999999999999998888876554321    2357999


Q ss_pred             EEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          218 VFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       218 vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +||++|.......+.+.++ ++|+++.+|...
T Consensus       230 v~~~~~~~~~~~~~~~~l~-~~G~~v~~g~~~  260 (334)
T cd08234         230 VIEATGVPKTLEQAIEYAR-RGGTVLVFGVYA  260 (334)
T ss_pred             EEECCCChHHHHHHHHHHh-cCCEEEEEecCC
Confidence            9999987655555666676 789999998765

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.9e-32  Score=232.82  Aligned_cols=235  Identities=35%  Similarity=0.522  Sum_probs=192.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++++..++ . ..++++ +.+.|+++++||+||+.++++|++|+..+.+. +  ...+|.++|||++|+|+++|++++
T Consensus         1 ~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~--~~~~~~~~g~e~~G~v~~vG~~v~   74 (325)
T cd08264           1 MKALVFEKSG-I-ENLKVE-DVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-K--VKPMPHIPGAEFAGVVEEVGDHVK   74 (325)
T ss_pred             CeeEEeccCC-C-CceEEE-eccCCCCCCCeEEEEEEEEEechHHHHHHhCC-C--CCCCCeecccceeEEEEEECCCCC
Confidence            9999998776 3 557888 78888899999999999999999999887642 1  123577899999999999999999


Q ss_pred             CCCCCCEEEeccCcccc------------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           81 KFKVGDEVYGDINEKAL------------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~------------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      .+++||+|+....-.+.                  .+....|+|++|+.++.+.++++|+++++++++.+++++.+||++
T Consensus        75 ~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~  154 (325)
T cd08264          75 GVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHA  154 (325)
T ss_pred             CCCCCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHH
Confidence            99999999976321000                  011136899999999999999999999999999999999999999


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCc--cccccCCCccEEEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKE--NIEDLPEKFDVVFD  220 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~~~d~vid  220 (255)
                      +...++++|++|+|+|++|++|++++++|+++ |.+++++++    .+.++++|+++++++.+.  .+....+++|+++|
T Consensus       155 l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~-G~~v~~~~~----~~~~~~~g~~~~~~~~~~~~~l~~~~~~~d~vl~  229 (325)
T cd08264         155 LKTAGLGPGETVVVFGASGNTGIFAVQLAKMM-GAEVIAVSR----KDWLKEFGADEVVDYDEVEEKVKEITKMADVVIN  229 (325)
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHHHHHHc-CCeEEEEeH----HHHHHHhCCCeeecchHHHHHHHHHhCCCCEEEE
Confidence            97788999999999998899999999999996 899888763    366788999988887531  11212267999999


Q ss_pred             CCCCccceeeeeeccccCCceEEEEeec
Q 025278          221 AVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       221 ~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ++|+. ....+.+.++ .+|+++.+|..
T Consensus       230 ~~g~~-~~~~~~~~l~-~~g~~v~~g~~  255 (325)
T cd08264         230 SLGSS-FWDLSLSVLG-RGGRLVTFGTL  255 (325)
T ss_pred             CCCHH-HHHHHHHhhc-cCCEEEEEecC
Confidence            99974 4556677777 78999999974

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=4.2e-31  Score=226.84  Aligned_cols=243  Identities=34%  Similarity=0.434  Sum_probs=201.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++..+.. ..++++ +.+.|.+.++|++||+.++++|++|+....|.++. ..+.|.++|||++|+|+++|++++
T Consensus         1 ~~a~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~G~~~~   77 (336)
T cd08276           1 MKAWRLSGGGGL-DNLKLV-EEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPP-PVKDPLIPLSDGAGEVVAVGEGVT   77 (336)
T ss_pred             CeEEEEeccCCC-cceEEE-eccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCC-CCCCCcccccceeEEEEEeCCCCc
Confidence            999999977654 557888 78888899999999999999999999998887643 234678899999999999999999


Q ss_pred             CCCCCCEEEeccCcc------------ccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcc
Q 025278           81 KFKVGDEVYGDINEK------------ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSA  147 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~  147 (255)
                      ++++||+|++.....            ...+....|+|++|+.++.+.++++|+++++.+++.+++++.+||+++. ...
T Consensus        78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~  157 (336)
T cd08276          78 RFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGP  157 (336)
T ss_pred             CCCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcC
Confidence            999999999864211            1122233688999999999999999999999999999999999999984 578


Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCC-ccccc----c--CCCccEEEE
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK-ENIED----L--PEKFDVVFD  220 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~----~--~~~~d~vid  220 (255)
                      +++|++|+|+| +|++|++++++|+++ |+++++++.++++++.++++|.+.+++... .++.+    .  .+++|++||
T Consensus       158 ~~~g~~vli~g-~g~~g~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  235 (336)
T cd08276         158 LKPGDTVLVQG-TGGVSLFALQFAKAA-GARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVE  235 (336)
T ss_pred             CCCCCEEEEEC-CcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEE
Confidence            99999999996 899999999999996 999999999999999999899999988765 33322    1  247999999


Q ss_pred             CCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          221 AVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       221 ~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++|... ...+.++++ .+|+++.+|....
T Consensus       236 ~~~~~~-~~~~~~~l~-~~G~~v~~g~~~~  263 (336)
T cd08276         236 VGGPGT-LAQSIKAVA-PGGVISLIGFLSG  263 (336)
T ss_pred             CCChHH-HHHHHHhhc-CCCEEEEEccCCC
Confidence            998543 444566666 6899999997654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=100.00  E-value=3.2e-31  Score=226.90  Aligned_cols=238  Identities=27%  Similarity=0.315  Sum_probs=193.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++.+|++ +.++++ +.|.|+|+++||+||+.++++|++|...+.|.++. ...+|.++|||++|+|++  ++++
T Consensus         1 ~~a~~~~~~~~~-~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~V~~--~~~~   75 (324)
T cd08288           1 FKALVLEKDDGG-TSAELR-ELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGI-VRTFPLVPGIDLAGTVVE--SSSP   75 (324)
T ss_pred             CeeEEEeccCCC-cceEEE-ECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccc-cCCCCCccccceEEEEEe--CCCC
Confidence            999999998876 668999 89999999999999999999999999988876521 223578899999999998  7777


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH---hcccC-CCCEEEE
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE---RSAFS-AGKSILV  156 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~---~~~~~-~g~~VlI  156 (255)
                      ++++||+|++....   .+....|+|++|+.++.+.++++|++++.++++.++.++++++.++.   ..... ++++|+|
T Consensus        76 ~~~~Gd~V~~~~~~---~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI  152 (324)
T cd08288          76 RFKPGDRVVLTGWG---VGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLV  152 (324)
T ss_pred             CCCCCCEEEECCcc---CCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEE
Confidence            89999999985310   11113689999999999999999999999999999988888887764   44555 6789999


Q ss_pred             EcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc--cc-CCCccEEEECCCCccceeeeee
Q 025278          157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE--DL-PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       157 ~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~--~~-~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++|++++|+|+.+ |+++++++.+++|.+.++++|+++++++.+....  .. .+++|.+||++|+.. ...+..
T Consensus       153 ~ga~g~vg~~~~~~A~~~-G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~  230 (324)
T cd08288         153 TGAAGGVGSVAVALLARL-GYEVVASTGRPEEADYLRSLGASEIIDRAELSEPGRPLQKERWAGAVDTVGGHT-LANVLA  230 (324)
T ss_pred             ECCCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCEEEEcchhhHhhhhhccCcccEEEECCcHHH-HHHHHH
Confidence            998899999999999996 9999999999999999999999999987653321  11 236899999999743 223344


Q ss_pred             ccccCCceEEEEeecc
Q 025278          234 CDKFQEKSLINFGLFR  249 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~  249 (255)
                      ..+ .+|+++.+|.+.
T Consensus       231 ~~~-~~g~~~~~G~~~  245 (324)
T cd08288         231 QTR-YGGAVAACGLAG  245 (324)
T ss_pred             Hhc-CCCEEEEEEecC
Confidence            444 569999999864

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.6e-31  Score=226.14  Aligned_cols=240  Identities=29%  Similarity=0.432  Sum_probs=193.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||+++++++++  ..++++ +++.|++.++||+||+.++++|++|+....+.+.  ....|.++|+|++|+|+.+|++++
T Consensus         1 ~~~~~~~~~~~--~~~~~~-~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~--~~~~p~~~G~e~~G~V~~vG~~v~   75 (306)
T cd08258           1 MKALVKTGPGP--GNVELR-EVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYD--PVETPVVLGHEFSGTIVEVGPDVE   75 (306)
T ss_pred             CeeEEEecCCC--CceEEe-ecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCC--cCCCCeeeccceEEEEEEECCCcC
Confidence            89999987542  457888 8999999999999999999999999998888652  234578899999999999999999


Q ss_pred             CCCCCCEEEeccCccc-------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDINEKA-------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~-------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      .+++||+|++......                   ..+....|+|++|++++...++++|+++++++++ ++....++|+
T Consensus        76 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~  154 (306)
T cd08258          76 GWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVH  154 (306)
T ss_pred             cCCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHH
Confidence            9999999998642100                   0011235899999999999999999999998876 7777788999


Q ss_pred             HH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe--cChhhHHHHHHcCCCEEEcCCCcccccc------C
Q 025278          142 GL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT--SSTAKLDLLRSLGADLAIDYTKENIEDL------P  212 (255)
Q Consensus       142 ~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~  212 (255)
                      ++ ....++++++|+|.| +|++|++++++|+++ |.+++.+.  .++++.+.++++|++++ ++...++.+.      .
T Consensus       155 ~l~~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~-G~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~  231 (306)
T cd08258         155 AVAERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQ-GATVVVVGTEKDEVRLDVAKELGADAV-NGGEEDLAELVNEITDG  231 (306)
T ss_pred             HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCEEEEECCCCCHHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCC
Confidence            98 567889999999977 899999999999996 89987763  35567888899999888 7765543221      2


Q ss_pred             CCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          213 EKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       213 ~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +++|++||++|+........+.++ .+|+++.+|...+
T Consensus       232 ~~vd~vld~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  268 (306)
T cd08258         232 DGADVVIECSGAVPALEQALELLR-KGGRIVQVGIFGP  268 (306)
T ss_pred             CCCCEEEECCCChHHHHHHHHHhh-cCCEEEEEcccCC
Confidence            479999999986655555566666 7899999999763

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=100.00  E-value=3.6e-31  Score=225.24  Aligned_cols=235  Identities=39%  Similarity=0.540  Sum_probs=198.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++++..++.+ ..++++ +.+.|.+.++|++||+.++++|++|+....+.++ .....|.++|||++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~v~~vg~~~~   77 (323)
T cd05276           1 MKAIVIKEPGGP-EVLELG-EVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYP-PPPGASDILGLEVAGVVVAVGPGVT   77 (323)
T ss_pred             CeEEEEecCCCc-ccceEE-ecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCC-CCCCCCCcccceeEEEEEeeCCCCC
Confidence            999999987766 567887 7777889999999999999999999998877653 2334578999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                      .+++||+|++..         .+|+|++|+.++.+.++++|+++++.+++.++.++.++|+++. ...+.++++|+|+|+
T Consensus        78 ~~~~Gd~V~~~~---------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~  148 (323)
T cd05276          78 GWKVGDRVCALL---------AGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGG  148 (323)
T ss_pred             CCCCCCEEEEec---------CCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            999999999864         2589999999999999999999999999999999999999984 578899999999998


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++++++++.. |++++++++++++++.++++|++.+++....++.+.      .+++|++||++|+.. ......
T Consensus       149 ~~~ig~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~  226 (323)
T cd05276         149 ASGVGTAAIQLAKAL-GARVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGGDY-LARNLR  226 (323)
T ss_pred             cChHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHcCCCEEEeCCchhHHHHHHHHhCCCCeEEEEECCchHH-HHHHHH
Confidence            899999999999995 999999999999999999999888887765432221      247999999999765 333455


Q ss_pred             ccccCCceEEEEeeccC
Q 025278          234 CDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~~  250 (255)
                      +++ .+|+++.+|..+.
T Consensus       227 ~~~-~~g~~i~~~~~~~  242 (323)
T cd05276         227 ALA-PDGRLVLIGLLGG  242 (323)
T ss_pred             hhc-cCCEEEEEecCCC
Confidence            555 6899999987643

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=3.6e-31  Score=228.64  Aligned_cols=239  Identities=24%  Similarity=0.360  Sum_probs=189.8

Q ss_pred             EEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcC-CCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            3 AWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLG-AFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         3 a~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g-~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      |+++++++.    ++++ +.+.|+|.++||+||+.++++|+.|++.+.+ ..+......|.++|+|++|+|+++|+++++
T Consensus         1 ~~~~~~~~~----~~~~-~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~   75 (343)
T cd05285           1 AAVLHGPGD----LRLE-ERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTH   75 (343)
T ss_pred             CceEecCCc----eeEE-ECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCC
Confidence            356776644    5888 8899999999999999999999999987643 221111235778999999999999999999


Q ss_pred             CCCCCEEEeccCccc------------------c-CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           82 FKVGDEVYGDINEKA------------------L-DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~------------------~-~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      +++||+|++.+...+                  . ......|+|++|++++.+.++++|+++++++++.+ .++.+||++
T Consensus        76 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~  154 (343)
T cd05285          76 LKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHA  154 (343)
T ss_pred             CCCCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHH
Confidence            999999986321100                  0 00113689999999999999999999999888766 577789998


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCccc---c----cc--C
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENI---E----DL--P  212 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~----~~--~  212 (255)
                      ++..++++|++|+|.| +|++|++++++|+.+ |.+ ++++++++++.++++++|++.++++++.++   .    ..  .
T Consensus       155 ~~~~~~~~g~~vlI~g-~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~  232 (343)
T cd05285         155 CRRAGVRPGDTVLVFG-AGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGG  232 (343)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCC
Confidence            8888999999999987 799999999999996 887 888888999999999999999998876543   1    11  2


Q ss_pred             CCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          213 EKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       213 ~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +++|++|||+|+..........++ .+|+++.+|....
T Consensus       233 ~~~d~vld~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  269 (343)
T cd05285         233 KGPDVVIECTGAESCIQTAIYATR-PGGTVVLVGMGKP  269 (343)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhh-cCCEEEEEccCCC
Confidence            469999999997644555566666 6899999986543

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=5.5e-31  Score=225.25  Aligned_cols=224  Identities=46%  Similarity=0.653  Sum_probs=179.6

Q ss_pred             EEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCC--CCCCcccccceEEE---EEEeC-CCCCCCCCCCEEEe
Q 025278           17 KFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATD--SPLPTIPGYDVAGV---VEKVG-SQVKKFKVGDEVYG   90 (255)
Q Consensus        17 ~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~--~~~p~~~G~e~~G~---V~~~G-~~v~~~~~Gd~V~~   90 (255)
                      .+.++.+.|.|.++++++++.++++|+.|+.+..|.+....  ..+|.+++.++.|+   +...| ..+.....||++..
T Consensus        20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~   99 (347)
T KOG1198|consen   20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA   99 (347)
T ss_pred             EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence            44437899999999999999999999999999998865322  25675555555544   44444 23344666766665


Q ss_pred             ccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hc------ccCCCCEEEEEcCCchH
Q 025278           91 DINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RS------AFSAGKSILVLGGAGGV  163 (255)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~------~~~~g~~VlI~ga~g~~  163 (255)
                      ..         ..|+|+||.++|...++++|+++++++++.+|.+..|||.++. ..      +.++|+.|||+||+|++
T Consensus       100 ~~---------~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggV  170 (347)
T KOG1198|consen  100 FL---------SSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGV  170 (347)
T ss_pred             cc---------CCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHH
Confidence            44         3799999999999999999999999999999999999999995 56      69999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc-----CCCccEEEECCCCccceeeeeeccccC
Q 025278          164 GTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQ  238 (255)
Q Consensus       164 G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~  238 (255)
                      |++++|+|++. ++..+++.++++++++++++|+++++||+++++.+.     .+++|+||||+|+.... ....+.. .
T Consensus       171 G~~aiQlAk~~-~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg~~~~~-~~~~~l~-~  247 (347)
T KOG1198|consen  171 GTAAIQLAKHA-GAIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVGGSTLT-KSLSCLL-K  247 (347)
T ss_pred             HHHHHHHHHhc-CCcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCCCCccc-cchhhhc-c
Confidence            99999999996 678888999999999999999999999999887654     34799999999986433 3344443 4


Q ss_pred             CceEEEEeeccCCC
Q 025278          239 EKSLINFGLFRQEV  252 (255)
Q Consensus       239 ~G~~v~~G~~~~~~  252 (255)
                      +|+...++..++..
T Consensus       248 ~g~~~~i~~~~~~~  261 (347)
T KOG1198|consen  248 GGGGAYIGLVGDEL  261 (347)
T ss_pred             CCceEEEEeccccc
Confidence            57666666666543

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=1.1e-30  Score=224.26  Aligned_cols=239  Identities=31%  Similarity=0.389  Sum_probs=198.1

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      ||+++.++|..   ++++ +.|.|.+.++|++|++.++++|++|+..+.|.++  ...+|.++|||++|+|+++|+++++
T Consensus         1 ~~~~~~~~~~~---~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~--~~~~p~~~g~e~~G~v~~~g~~~~~   74 (330)
T cd08245           1 KAAVVHAAGGP---LEPE-EVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWG--GSKYPLVPGHEIVGEVVEVGAGVEG   74 (330)
T ss_pred             CeEEEecCCCC---ceEE-eccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCC--CCCCCcccCccceEEEEEECCCCcc
Confidence            78999988543   6888 8899999999999999999999999999988763  2346788999999999999999999


Q ss_pred             CCCCCEEEecc-----Ccccc--------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           82 FKVGDEVYGDI-----NEKAL--------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        82 ~~~Gd~V~~~~-----~~~~~--------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      +++||+|+..+     +....              .+....|+|++|+.++...++++|+++++.+++.+++...+||++
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~  154 (330)
T cd08245          75 RKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSA  154 (330)
T ss_pred             cccCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHH
Confidence            99999998421     10000              012236899999999999999999999999999899999999999


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc-cCCCccEEEEC
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED-LPEKFDVVFDA  221 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~~~~d~vid~  221 (255)
                      +....++++++|+|+| +|++|++++++|+.+ |.+++++++++++.+.++++|++.+++........ ..+++|++||+
T Consensus       155 l~~~~~~~~~~vlI~g-~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~  232 (330)
T cd08245         155 LRDAGPRPGERVAVLG-IGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVT  232 (330)
T ss_pred             HHhhCCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEEC
Confidence            9778899999999997 788999999999995 99999999999999999999998888765433221 22479999999


Q ss_pred             CCCccceeeeeeccccCCceEEEEeecc
Q 025278          222 VGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       222 ~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ++.......+.+.++ .+|+++.+|...
T Consensus       233 ~~~~~~~~~~~~~l~-~~G~~i~~~~~~  259 (330)
T cd08245         233 VVSGAAAEAALGGLR-RGGRIVLVGLPE  259 (330)
T ss_pred             CCcHHHHHHHHHhcc-cCCEEEEECCCC
Confidence            887666666677777 689999998653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=6.4e-31  Score=226.61  Aligned_cols=236  Identities=27%  Similarity=0.413  Sum_probs=186.1

Q ss_pred             EEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHc-CCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q 025278            5 VYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRML-GAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFK   83 (255)
Q Consensus         5 v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~-g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~   83 (255)
                      +++++++    ++++ +.+.|++.++||+||+.++++|++|+..++ +.++......|.++|||++|+|+++|+++++++
T Consensus         2 ~~~~~~~----~~~~-~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~   76 (339)
T cd08232           2 VIHAAGD----LRVE-ERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLA   76 (339)
T ss_pred             eeccCCc----eEEE-EcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCC
Confidence            4555554    4888 789999999999999999999999998774 333212234577899999999999999999999


Q ss_pred             CCCEEEeccCcccc------------------CC-----CCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHH
Q 025278           84 VGDEVYGDINEKAL------------------DH-----PKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY  140 (255)
Q Consensus        84 ~Gd~V~~~~~~~~~------------------~~-----~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~  140 (255)
                      +||+|++.....+.                  .+     ....|+|++|++++.+.++++|++++.++++. ..+++++|
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~  155 (339)
T cd08232          77 PGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVAL  155 (339)
T ss_pred             CCCEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHH
Confidence            99999874221110                  00     01368999999999999999999999988765 57778899


Q ss_pred             HHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCcccccc---CCCcc
Q 025278          141 EGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL---PEKFD  216 (255)
Q Consensus       141 ~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~---~~~~d  216 (255)
                      +++......++++|+|.| +|++|++++|+|+.+ |. +++++++++++.++++++|+++++++.+.++...   .+++|
T Consensus       156 ~~l~~~~~~~~~~VLI~g-~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd  233 (339)
T cd08232         156 HAVNRAGDLAGKRVLVTG-AGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFD  233 (339)
T ss_pred             HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCcc
Confidence            998654434899999987 799999999999996 87 7888888899989889999999998765443222   23699


Q ss_pred             EEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          217 VVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       217 ~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ++||++|+........+.++ .+|+++.+|...
T Consensus       234 ~vld~~g~~~~~~~~~~~L~-~~G~~v~~g~~~  265 (339)
T cd08232         234 VVFEASGAPAALASALRVVR-PGGTVVQVGMLG  265 (339)
T ss_pred             EEEECCCCHHHHHHHHHHHh-cCCEEEEEecCC
Confidence            99999997555555667776 789999998654

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd05281 TDH Threonine dehydrogenase

Probab=99.98  E-value=8.1e-31  Score=226.28  Aligned_cols=241  Identities=29%  Similarity=0.323  Sum_probs=191.4

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCC-CCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAF-SATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      ||+++++.++..   +++. +.+.|+|.++|++||+.++++|+.|+..+.+.. .......|.++|||++|+|+.+|+++
T Consensus         1 ~~~~~~~~~~~~---~~~~-~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v   76 (341)
T cd05281           1 MKAIVKTKAGPG---AELV-EVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGV   76 (341)
T ss_pred             CcceEEecCCCc---eEEE-eCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCC
Confidence            999999987753   6888 889999999999999999999999998765432 11223456789999999999999999


Q ss_pred             CCCCCCCEEEeccCcccc------------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           80 KKFKVGDEVYGDINEKAL------------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~------------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      +.+++||+|++.....+.                  .+....|+|++|++++.+.++++|++++.+. +.++.++.++++
T Consensus        77 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~-a~~~~~~~~a~~  155 (341)
T cd05281          77 TRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEI-ASIQEPLGNAVH  155 (341)
T ss_pred             CCCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHH-hhhhhHHHHHHH
Confidence            999999999885211000                  0111358999999999999999999999854 456667778888


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCccccc---c--CCCc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIED---L--PEKF  215 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~--~~~~  215 (255)
                      ++. ...++|++|+|.| +|++|++++++|+.+ |. ++++++++++|.+.++++|++++++++..++..   .  .+++
T Consensus       156 ~~~-~~~~~g~~vlV~g-~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v  232 (341)
T cd05281         156 TVL-AGDVSGKSVLITG-CGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGV  232 (341)
T ss_pred             HHH-hcCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCC
Confidence            775 4557899999987 799999999999996 77 688888888999999999999988876544421   1  2479


Q ss_pred             cEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          216 DVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       216 d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |++|||+|+......+.+.++ .+|+++.+|....
T Consensus       233 d~vld~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  266 (341)
T cd05281         233 DVVLEMSGNPKAIEQGLKALT-PGGRVSILGLPPG  266 (341)
T ss_pred             CEEEECCCCHHHHHHHHHHhc-cCCEEEEEccCCC
Confidence            999999997666666677776 7899999987543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.98  E-value=7.8e-31  Score=224.22  Aligned_cols=231  Identities=29%  Similarity=0.470  Sum_probs=194.9

Q ss_pred             EEcccCCCcc--ceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q 025278            5 VYKEYGNSQS--VLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKF   82 (255)
Q Consensus         5 v~~~~~~~~~--~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   82 (255)
                      +++.++.+ .  .++++ +.+.|++.+++|+||+.++++|+.|+..+.+.++. ....|.++|||++|+|+++|++++.+
T Consensus         2 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~v~~~   78 (323)
T cd05282           2 VYTQFGEP-LPLVLELV-SLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGS-RPPLPAVPGNEGVGVVVEVGSGVSGL   78 (323)
T ss_pred             eeCcCCCC-ccceEEeE-eCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCC-CCCCCCcCCcceEEEEEEeCCCCCCC
Confidence            34555554 3  67888 78889999999999999999999999998876542 23457899999999999999999999


Q ss_pred             CCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcCCc
Q 025278           83 KVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGGAG  161 (255)
Q Consensus        83 ~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga~g  161 (255)
                      ++||+|++...         .|+|++|+.++...++++|+++++.+++.+++..+++|+++. ...+.+|++|+|+|++|
T Consensus        79 ~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~  149 (323)
T cd05282          79 LVGQRVLPLGG---------EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANS  149 (323)
T ss_pred             CCCCEEEEeCC---------CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEccccc
Confidence            99999999642         489999999999999999999999999988889999999984 56789999999999889


Q ss_pred             hHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CCCccEEEECCCCccceeeeeecc
Q 025278          162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PEKFDVVFDAVGKMCISIVYQKCD  235 (255)
Q Consensus       162 ~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~~~  235 (255)
                      ++|++++++|+++ |++++++++++++.+.++++|++.++++.+.++..    .  .+++|++|||+|+... ....+++
T Consensus       150 ~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~-~~~~~~l  227 (323)
T cd05282         150 AVGRMLIQLAKLL-GFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGGESA-TRLARSL  227 (323)
T ss_pred             HHHHHHHHHHHHC-CCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCCCHHH-HHHHHhh
Confidence            9999999999996 99999999999999999999999999886543322    1  2479999999998654 3446667


Q ss_pred             ccCCceEEEEeeccC
Q 025278          236 KFQEKSLINFGLFRQ  250 (255)
Q Consensus       236 ~~~~G~~v~~G~~~~  250 (255)
                      + .+|+++.+|....
T Consensus       228 ~-~~g~~v~~g~~~~  241 (323)
T cd05282         228 R-PGGTLVNYGLLSG  241 (323)
T ss_pred             C-CCCEEEEEccCCC
Confidence            6 6899999987654

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.98  E-value=1.5e-30  Score=226.59  Aligned_cols=240  Identities=25%  Similarity=0.319  Sum_probs=185.3

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC-CCCCCCcccccceEEEEEEeCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA-TDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      +++++..++.    ++++ +.+.|++.++||+||+.++++|++|++.+.+.... ....+|.++|||++|+|+++|++++
T Consensus        19 ~~~~~~~~~~----l~~~-~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   93 (364)
T PLN02702         19 MAAWLVGVNT----LKIQ-PFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVK   93 (364)
T ss_pred             ceEEEecCCc----eEEE-eccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCC
Confidence            4444554443    4787 78888899999999999999999999988763211 1123577899999999999999999


Q ss_pred             CCCCCCEEEeccCccc-------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDINEKA-------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~-------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      ++++||+|++.+...+                   .......|+|++|+.++...++++|+++++++++.. .++.++|+
T Consensus        94 ~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~  172 (364)
T PLN02702         94 HLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVH  172 (364)
T ss_pred             CCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHH
Confidence            9999999987421100                   000112689999999999999999999998887752 23334888


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCC--Cccccc--------
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYT--KENIED--------  210 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~--~~~~~~--------  210 (255)
                      +++..++.++++|+|+| +|++|++++++|+.+ |++ +++++++++|.+.++++|++.++++.  ..++.+        
T Consensus       173 ~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  250 (364)
T PLN02702        173 ACRRANIGPETNVLVMG-AGPIGLVTMLAARAF-GAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKA  250 (364)
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhh
Confidence            88778899999999997 799999999999996 776 56777888999999999999887653  222211        


Q ss_pred             cCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          211 LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       211 ~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ..+++|++||++|+......+.++++ .+|+++.+|...+
T Consensus       251 ~~~~~d~vid~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  289 (364)
T PLN02702        251 MGGGIDVSFDCVGFNKTMSTALEATR-AGGKVCLVGMGHN  289 (364)
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHHh-cCCEEEEEccCCC
Confidence            12479999999997666677788887 7899999997543

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=1.9e-30  Score=222.60  Aligned_cols=232  Identities=31%  Similarity=0.465  Sum_probs=196.7

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      ||+++...+.+ ..++++ +.+.|.|.++||+|++.++++|++|+..+.|.++.. ..+|.++|||++|+|+.+|+++..
T Consensus         2 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~vG~~v~~   78 (331)
T cd08273           2 REVVVTRRGGP-EVLKVV-EADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQ-PPLPFTPGYDLVGRVDALGSGVTG   78 (331)
T ss_pred             eeEEEccCCCc-ccEEEe-ccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCC-CCCCcccccceEEEEEEeCCCCcc
Confidence            89999998877 678898 789999999999999999999999999988875422 246789999999999999999999


Q ss_pred             CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcCC
Q 025278           82 FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGGA  160 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga~  160 (255)
                      +++||+|.+...         .|+|++|+.++.+.++++|++++.++++.+++++.++|+++. ...+.+|++|+|+|++
T Consensus        79 ~~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~  149 (331)
T cd08273          79 FEVGDRVAALTR---------VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGAS  149 (331)
T ss_pred             CCCCCEEEEeCC---------CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence            999999999652         489999999999999999999999999999999999999985 4789999999999988


Q ss_pred             chHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc---cCCCccEEEECCCCccceeeeeecccc
Q 025278          161 GGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED---LPEKFDVVFDAVGKMCISIVYQKCDKF  237 (255)
Q Consensus       161 g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~~~~~d~vid~~G~~~~~~~~~~~~~~  237 (255)
                      |++|++++++|+.+ |++++.++. +++.+.++++|++. ++....++..   ..+++|+++|++|+.. ...+.++++ 
T Consensus       150 g~ig~~~~~~a~~~-g~~v~~~~~-~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~-  224 (331)
T cd08273         150 GGVGQALLELALLA-GAEVYGTAS-ERNHAALRELGATP-IDYRTKDWLPAMLTPGGVDVVFDGVGGES-YEESYAALA-  224 (331)
T ss_pred             cHHHHHHHHHHHHc-CCEEEEEeC-HHHHHHHHHcCCeE-EcCCCcchhhhhccCCCceEEEECCchHH-HHHHHHHhc-
Confidence            99999999999995 899998887 88889999999754 4444332221   1247999999999876 445566666 


Q ss_pred             CCceEEEEeeccC
Q 025278          238 QEKSLINFGLFRQ  250 (255)
Q Consensus       238 ~~G~~v~~G~~~~  250 (255)
                      .+|+++.+|....
T Consensus       225 ~~g~~v~~g~~~~  237 (331)
T cd08273         225 PGGTLVCYGGNSS  237 (331)
T ss_pred             CCCEEEEEccCCC
Confidence            6899999997643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=1.4e-30  Score=222.29  Aligned_cols=236  Identities=45%  Similarity=0.638  Sum_probs=198.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..++.+ ..++++ +.+.|++.+++|+|++.++++|++|+....+.++ .....|.++|||++|+|+.+|+++.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~v~~~G~~~~   77 (326)
T cd08272           1 MKALVLESFGGP-EVFELR-EVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAA-ARPPLPAILGCDVAGVVEAVGEGVT   77 (326)
T ss_pred             CeEEEEccCCCc-hheEEe-ecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCC-CCCCCCcccccceeEEEEEeCCCCC
Confidence            999999998876 567888 7788889999999999999999999998877653 2234578899999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga  159 (255)
                      .+++||+|++.....    ....|+|++|+.++...++++|++++..+++.+++.+.+||+++ +..++++|++++|+|+
T Consensus        78 ~~~~Gd~V~~~~~~~----~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~  153 (326)
T cd08272          78 RFRVGDEVYGCAGGL----GGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGG  153 (326)
T ss_pred             CCCCCCEEEEccCCc----CCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            999999999865211    01258899999999999999999999999998999999999997 6788999999999999


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++++++|+.+ |.+++.++++ ++.+.++++|++.+++.... +.+.      .+++|+++|++|+.. ......
T Consensus       154 ~~~~g~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~d~v~~~~~~~~-~~~~~~  229 (326)
T cd08272         154 AGGVGHVAVQLAKAA-GARVYATASS-EKAAFARSLGADPIIYYRET-VVEYVAEHTGGRGFDVVFDTVGGET-LDASFE  229 (326)
T ss_pred             CCcHHHHHHHHHHHc-CCEEEEEech-HHHHHHHHcCCCEEEecchh-HHHHHHHhcCCCCCcEEEECCChHH-HHHHHH
Confidence            999999999999995 9999999888 89999999999888876544 3221      247999999999754 444556


Q ss_pred             ccccCCceEEEEeec
Q 025278          234 CDKFQEKSLINFGLF  248 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~  248 (255)
                      +++ .+|+++.+|..
T Consensus       230 ~l~-~~g~~v~~~~~  243 (326)
T cd08272         230 AVA-LYGRVVSILGG  243 (326)
T ss_pred             Hhc-cCCEEEEEecC
Confidence            666 78999998854

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=2.9e-30  Score=221.78  Aligned_cols=244  Identities=37%  Similarity=0.473  Sum_probs=199.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..++.. ..++++ +.+.|.+.+++|+||+.++++|.+|+..+.|..+. ...+|.++|||++|+|+.+|+++.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~G~~~~   77 (342)
T cd08266           1 MKAVVIRGHGGP-EVLEYG-DLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGI-KLPLPHILGSDGAGVVEAVGPGVT   77 (342)
T ss_pred             CeEEEEecCCCc-cceeEe-ecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCC-CCCCCeecccceEEEEEEeCCCCC
Confidence            999999866655 557888 77888899999999999999999999998886531 235578899999999999999999


Q ss_pred             CCCCCCEEEeccCccc------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           81 KFKVGDEVYGDINEKA------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      .+++||+|++.....+                  ..+....|+|++|+.++.+.++++|+++++++++.+++++.++|++
T Consensus        78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~  157 (342)
T cd08266          78 NVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHM  157 (342)
T ss_pred             CCCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHH
Confidence            9999999998632110                  0112246889999999999999999999999999999999999999


Q ss_pred             H-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCc
Q 025278          143 L-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKF  215 (255)
Q Consensus       143 l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~  215 (255)
                      + +...+.++++++|+|+++++|++++++++.. |.+++.+++++++.+.++.++.+.+++..+.+..+.      .+++
T Consensus       158 l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
T cd08266         158 LVTRARLRPGETVLVHGAGSGVGSAAIQIAKLF-GATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGV  236 (342)
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCC
Confidence            7 5688899999999998889999999999995 999999999999999998888887777655332211      2479


Q ss_pred             cEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          216 DVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       216 d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |+++|++|... ......+++ ++|+++.+|....
T Consensus       237 d~~i~~~g~~~-~~~~~~~l~-~~G~~v~~~~~~~  269 (342)
T cd08266         237 DVVVEHVGAAT-WEKSLKSLA-RGGRLVTCGATTG  269 (342)
T ss_pred             cEEEECCcHHH-HHHHHHHhh-cCCEEEEEecCCC
Confidence            99999999753 344455666 6899999987654

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.98  E-value=2.2e-30  Score=220.67  Aligned_cols=239  Identities=34%  Similarity=0.548  Sum_probs=201.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++++..++.+ ..++++ +.+.|++.+++|+|++.++++|++|+....|.++. ....|.++|||++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~g~~~~   77 (325)
T cd08253           1 MRAIRYHEFGAP-DVLRLG-DLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPG-LPPLPYVPGSDGAGVVEAVGEGVD   77 (325)
T ss_pred             CceEEEcccCCc-ccceee-ecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCC-CCCCCeecccceEEEEEeeCCCCC
Confidence            899999987765 557888 88999999999999999999999999988776542 245688999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                      ++++||+|++.....    ....|+|++|+.++.+.++++|++++.++++.++++..++|+++. ..++.+|++++|+|+
T Consensus        78 ~~~~Gd~v~~~~~~~----~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~  153 (325)
T cd08253          78 GLKVGDRVWLTNLGW----GRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGG  153 (325)
T ss_pred             CCCCCCEEEEecccc----CCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcC
Confidence            999999999875321    113689999999999999999999999999999999999999985 488999999999999


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      ++++|++++++++.. |.+++++++++++.+.++++|++.+++....++.+    .  .+++|+++|++|+... ....+
T Consensus       154 ~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~-~~~~~  231 (325)
T cd08253         154 SGAVGHAAVQLARWA-GARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANVNL-AKDLD  231 (325)
T ss_pred             CchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECCchHHH-HHHHH
Confidence            999999999999995 99999999999999999999999888876544321    1  2479999999997643 33455


Q ss_pred             ccccCCceEEEEeecc
Q 025278          234 CDKFQEKSLINFGLFR  249 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~  249 (255)
                      +++ .+|+++.+|...
T Consensus       232 ~l~-~~g~~v~~~~~~  246 (325)
T cd08253         232 VLA-PGGRIVVYGSGG  246 (325)
T ss_pred             hhC-CCCEEEEEeecC
Confidence            565 679999998743

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.98  E-value=2.8e-30  Score=218.71  Aligned_cols=238  Identities=45%  Similarity=0.630  Sum_probs=197.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCC-CCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFS-ATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~-~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||++++.++.. ..++++ +.+.|+++++||+||+.++++|++|+..+.|.+. ......|..+|||++|+|+.+|+++
T Consensus         1 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~   78 (309)
T cd05289           1 MKAVRIHEYGGP-EVLELA-DVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGV   78 (309)
T ss_pred             CceEEEcccCCc-cceeec-ccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCC
Confidence            899999988876 556777 6777889999999999999999999999887642 1123457889999999999999999


Q ss_pred             CCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHh-cccCCCCEEEEEc
Q 025278           80 KKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-SAFSAGKSILVLG  158 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlI~g  158 (255)
                      .++++||+|++....      ...|+|++|+.++...++++|+++++..++.+++...++|+++.. ..+.++++|+|+|
T Consensus        79 ~~~~~G~~V~~~~~~------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g  152 (309)
T cd05289          79 TGFKVGDEVFGMTPF------TRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHG  152 (309)
T ss_pred             CCCCCCCEEEEccCC------CCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEec
Confidence            999999999986410      125899999999999999999999998888889999999999865 5589999999999


Q ss_pred             CCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc--ccCCCccEEEECCCCccceeeeeeccc
Q 025278          159 GAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE--DLPEKFDVVFDAVGKMCISIVYQKCDK  236 (255)
Q Consensus       159 a~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~--~~~~~~d~vid~~G~~~~~~~~~~~~~  236 (255)
                      ++|.+|++++++++.. |.++++++.++ +.+.++++|.+.+++....++.  ...+++|++||++|+.. ...+..+++
T Consensus       153 ~~g~~g~~~~~~a~~~-g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~-~~~~~~~l~  229 (309)
T cd05289         153 AAGGVGSFAVQLAKAR-GARVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGET-LARSLALVK  229 (309)
T ss_pred             CCchHHHHHHHHHHHc-CCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECCchHH-HHHHHHHHh
Confidence            8899999999999995 99999888877 8888899998888887654443  22347999999999873 344456666


Q ss_pred             cCCceEEEEeeccC
Q 025278          237 FQEKSLINFGLFRQ  250 (255)
Q Consensus       237 ~~~G~~v~~G~~~~  250 (255)
                       .+|+++.+|....
T Consensus       230 -~~g~~v~~g~~~~  242 (309)
T cd05289         230 -PGGRLVSIAGPPP  242 (309)
T ss_pred             -cCcEEEEEcCCCc
Confidence             6899999987543

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=3.3e-30  Score=225.90  Aligned_cols=230  Identities=29%  Similarity=0.372  Sum_probs=181.3

Q ss_pred             eEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCC-----CCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q 025278           16 LKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFS-----ATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYG   90 (255)
Q Consensus        16 l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~-----~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~   90 (255)
                      ++++ +.+.|++.++||+||+.++++|++|++.+.+...     .....+|.++|||++|+|+++|++++++++||+|++
T Consensus        39 ~~~~-~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~  117 (384)
T cd08265          39 LRVE-DVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTA  117 (384)
T ss_pred             EEEE-ECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEE
Confidence            6888 8999999999999999999999999998863211     012345789999999999999999999999999986


Q ss_pred             ccCccc------------------cCCCCCCcceeeEEeeeCCceEeCCCC-------CCHHhhhccchhHHHHHHHH-H
Q 025278           91 DINEKA------------------LDHPKRNGSLAEYTAVEENLLALKPKN-------LSFVEAASLPLATETAYEGL-E  144 (255)
Q Consensus        91 ~~~~~~------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~-------~~~~~aa~l~~~~~ta~~~l-~  144 (255)
                      .+...+                  ..+....|+|++|+.++.+.++++|+.       ++.+ ++.++.++++||+++ .
T Consensus       118 ~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~  196 (384)
T cd08265         118 EEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFI  196 (384)
T ss_pred             CCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-HhhhhhHHHHHHHHHHh
Confidence            322111                  001223689999999999999999986       3444 556677888999998 3


Q ss_pred             h-cccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCc---cccc----c--CC
Q 025278          145 R-SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKE---NIED----L--PE  213 (255)
Q Consensus       145 ~-~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~----~--~~  213 (255)
                      . .++++|++|+|+| +|++|++++++|+.+ |+ ++++++++++|.+.++++|+++++++.+.   ++.+    .  .+
T Consensus       197 ~~~~~~~g~~VlV~g-~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~  274 (384)
T cd08265         197 RGGGFRPGAYVVVYG-AGPIGLAAIALAKAA-GASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGW  274 (384)
T ss_pred             hcCCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCC
Confidence            4 6899999999996 799999999999996 77 68888888899999999999999887643   2221    1  24


Q ss_pred             CccEEEECCCCc-cceeeeeeccccCCceEEEEeeccC
Q 025278          214 KFDVVFDAVGKM-CISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       214 ~~d~vid~~G~~-~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++|+|+|++|+. .....+.++++ .+|+++.+|....
T Consensus       275 gvDvvld~~g~~~~~~~~~~~~l~-~~G~~v~~g~~~~  311 (384)
T cd08265         275 GADIQVEAAGAPPATIPQMEKSIA-INGKIVYIGRAAT  311 (384)
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHH-cCCEEEEECCCCC
Confidence            799999999964 23444566666 6899999997543

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=1.9e-30  Score=220.79  Aligned_cols=219  Identities=28%  Similarity=0.336  Sum_probs=182.1

Q ss_pred             ceEEeecccCCCCCCCeEEEEEeEeecChHhHHHH-cCCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeccC
Q 025278           15 VLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRM-LGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDIN   93 (255)
Q Consensus        15 ~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~-~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~   93 (255)
                      .++++ +++.|++.++||+||+.++++|++|+..+ .|..+......|.++|||++|+|+++|++++.+++||+|++.. 
T Consensus         6 ~~~~~-~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~-   83 (312)
T cd08269           6 RFEVE-EHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS-   83 (312)
T ss_pred             eeEEE-ECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEec-
Confidence            36888 78999999999999999999999999987 7754322223478899999999999999999999999999864 


Q ss_pred             ccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHH
Q 025278           94 EKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKH  173 (255)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~  173 (255)
                               .|+|++|+.++.+.++++|+++  ..++....++.++|+++...+++++++|+|+| +|++|++++++|+.
T Consensus        84 ---------~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~la~~  151 (312)
T cd08269          84 ---------GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFRRGWIRAGKTVAVIG-AGFIGLLFLQLAAA  151 (312)
T ss_pred             ---------CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH
Confidence                     5899999999999999999998  23332236777899998888899999999997 79999999999999


Q ss_pred             hcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEe
Q 025278          174 VFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       174 ~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      + |++ ++++.+++++.++++++|+++++++...++.+    .  .+++|++|||+|.......+.+.++ .+|+++.+|
T Consensus       152 ~-g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~-~~g~~~~~g  229 (312)
T cd08269         152 A-GARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVA-ERGRLVIFG  229 (312)
T ss_pred             c-CCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhc-cCCEEEEEc
Confidence            6 888 88888899999999999999888865544322    1  2479999999987655566667776 789999998


Q ss_pred             ecc
Q 025278          247 LFR  249 (255)
Q Consensus       247 ~~~  249 (255)
                      ...
T Consensus       230 ~~~  232 (312)
T cd08269         230 YHQ  232 (312)
T ss_pred             cCC
Confidence            754

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=8.3e-30  Score=216.56  Aligned_cols=232  Identities=36%  Similarity=0.464  Sum_probs=196.8

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      ||+.+..++.. ..+++. +.+.|.+.++||+||+.++++|++|+....+.++   ..+|.++|||++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~---~~~~~~~g~e~~G~v~~~g~~~~~   75 (320)
T cd05286           1 KAVRIHKTGGP-EVLEYE-DVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYP---LPLPFVLGVEGAGVVEAVGPGVTG   75 (320)
T ss_pred             CeEEEecCCCc-cceEEe-ecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCC---CCCCccCCcceeEEEEEECCCCCC
Confidence            67888877766 567777 6777788999999999999999999999887653   245778999999999999999999


Q ss_pred             CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCC
Q 025278           82 FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGA  160 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~  160 (255)
                      +++||+|++..         ..|+|++|+.++.+.++++|++++..+++.+++...++|+++ +..++.+|++|+|+|++
T Consensus        76 ~~~G~~V~~~~---------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~  146 (320)
T cd05286          76 FKVGDRVAYAG---------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAA  146 (320)
T ss_pred             CCCCCEEEEec---------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            99999999863         158999999999999999999999999988888999999998 45789999999999999


Q ss_pred             chHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CCCccEEEECCCCccceeeeeec
Q 025278          161 GGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PEKFDVVFDAVGKMCISIVYQKC  234 (255)
Q Consensus       161 g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~~  234 (255)
                      |++|++++++++.+ |+++++++.++++.+.++++|++.+++.....+.+    .  .+++|++|||+|+. ....+.++
T Consensus       147 g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~~~~~  224 (320)
T cd05286         147 GGVGLLLTQWAKAL-GATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGKD-TFEGSLDS  224 (320)
T ss_pred             chHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCcH-hHHHHHHh
Confidence            99999999999996 99999999999999999999999988776543322    1  24799999999974 44555666


Q ss_pred             cccCCceEEEEeeccC
Q 025278          235 DKFQEKSLINFGLFRQ  250 (255)
Q Consensus       235 ~~~~~G~~v~~G~~~~  250 (255)
                      ++ .+|+++.+|....
T Consensus       225 l~-~~g~~v~~g~~~~  239 (320)
T cd05286         225 LR-PRGTLVSFGNASG  239 (320)
T ss_pred             hc-cCcEEEEEecCCC
Confidence            76 7899999987543

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=8.6e-30  Score=217.62  Aligned_cols=234  Identities=39%  Similarity=0.574  Sum_probs=196.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..|++. ..++++ +.+.|++.+++|+||+.++++|++|+....+.++  ...+|.++|||++|+|+.+|++++
T Consensus         1 ~~a~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~~~   76 (325)
T cd08271           1 MKAWVLPKPGAA-LQLTLE-EIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPP--AWSYPHVPGVDGAGVVVAVGAKVT   76 (325)
T ss_pred             CeeEEEccCCCc-ceeEEe-ccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC--CCCCCcccccceEEEEEEeCCCCC
Confidence            999999999952 457898 8999999999999999999999999998877643  123467899999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                      .+++||+|++....      ...|+|++|+.++.+.++++|++++..+++.+++...++|+++. ...+++|++|+|+|+
T Consensus        77 ~~~~Gd~V~~~~~~------~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~  150 (325)
T cd08271          77 GWKVGDRVAYHASL------ARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGG  150 (325)
T ss_pred             cCCCCCEEEeccCC------CCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECC
Confidence            99999999986420      12589999999999999999999999999989999999999984 578899999999998


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc------cCCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED------LPEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~------~~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      ++++|++++++++.. |.+++.+. ++++.+.++++|++.+++.....+..      ..+++|+++|++|+.... .+.+
T Consensus       151 ~~~ig~~~~~~a~~~-g~~v~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~-~~~~  227 (325)
T cd08271         151 AGGVGSFAVQLAKRA-GLRVITTC-SKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGETAA-ALAP  227 (325)
T ss_pred             ccHHHHHHHHHHHHc-CCEEEEEE-cHHHHHHHHHcCCcEEecCCCccHHHHHHHHcCCCCCcEEEECCCcHhHH-HHHH
Confidence            899999999999995 99988776 67788888899999888876543322      124799999999976543 3566


Q ss_pred             ccccCCceEEEEeec
Q 025278          234 CDKFQEKSLINFGLF  248 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~  248 (255)
                      +++ .+|+++.+|..
T Consensus       228 ~l~-~~G~~v~~~~~  241 (325)
T cd08271         228 TLA-FNGHLVCIQGR  241 (325)
T ss_pred             hhc-cCCEEEEEcCC
Confidence            676 68999988744

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.97  E-value=1.1e-29  Score=220.16  Aligned_cols=238  Identities=32%  Similarity=0.470  Sum_probs=182.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCC-CCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPS-LREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~-~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      .|++++..++.+ ..++.. +.+.|+ +.++||+||+.++++|++|+..+.+... .....|.++|||++|+|+++|+++
T Consensus         1 ~~~~~~~~~~~~-~~~~~~-~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~V~~vG~~v   77 (352)
T cd08247           1 YKALTFKNNTSP-LTITTI-KLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTF-HFKVKEKGLGRDYSGVIVKVGSNV   77 (352)
T ss_pred             CceEEEecCCCc-ceeecc-CCCCCCCCCCCeEEEEEEEEecChHhHHHhccccc-ccccCCCccCceeEEEEEEeCccc
Confidence            489999999877 444433 344443 3999999999999999999988754321 112237789999999999999999


Q ss_pred             C-CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCC----ceEeCCCCCCHHhhhccchhHHHHHHHHHh-c-ccCCCC
Q 025278           80 K-KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEEN----LLALKPKNLSFVEAASLPLATETAYEGLER-S-AFSAGK  152 (255)
Q Consensus        80 ~-~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~-~-~~~~g~  152 (255)
                      + .+++||+|++......    ...|+|++|++++..    .++++|+++++++++.+++++.|||+++.. . ++++|+
T Consensus        78 ~~~~~~Gd~V~~~~~~~~----~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~  153 (352)
T cd08247          78 ASEWKVGDEVCGIYPHPY----GGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDS  153 (352)
T ss_pred             ccCCCCCCEEEEeecCCC----CCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCC
Confidence            8 8999999998653211    136899999999987    789999999999999999999999999865 4 699999


Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCcc---c-cc----c--CCCccEEEEC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKEN---I-ED----L--PEKFDVVFDA  221 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~---~-~~----~--~~~~d~vid~  221 (255)
                      +|+|+|+++++|++++++|+++++. .++.+. ++++.+.++++|+++++++.+.+   + .+    .  .+++|++|||
T Consensus       154 ~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~  232 (352)
T cd08247         154 KVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDC  232 (352)
T ss_pred             eEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCCCcccchHHHHHHhhcCCCCceEEEEC
Confidence            9999998899999999999985455 455554 55666678899999999876543   1 11    1  3589999999


Q ss_pred             CCCccceeeeeeccc--cCCceEEEEe
Q 025278          222 VGKMCISIVYQKCDK--FQEKSLINFG  246 (255)
Q Consensus       222 ~G~~~~~~~~~~~~~--~~~G~~v~~G  246 (255)
                      +|+........++++  ..+|+++.++
T Consensus       233 ~g~~~~~~~~~~~l~~~~~~G~~v~~~  259 (352)
T cd08247         233 VGGYDLFPHINSILKPKSKNGHYVTIV  259 (352)
T ss_pred             CCCHHHHHHHHHHhCccCCCCEEEEEe
Confidence            998544444444442  0369999775

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.97  E-value=4.7e-30  Score=221.41  Aligned_cols=235  Identities=26%  Similarity=0.293  Sum_probs=185.8

Q ss_pred             EcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCC-CCCCCCCcccccceEEEEEEeCCCCCCCCC
Q 025278            6 YKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFS-ATDSPLPTIPGYDVAGVVEKVGSQVKKFKV   84 (255)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~-~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~   84 (255)
                      -++|+..   ++++ +.|.|+|.++||+||+.++++|++|+..+.+... ....++|.++|||++|+|+++|++++++++
T Consensus         4 ~~~~~~~---~~l~-~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~   79 (340)
T TIGR00692         4 KTKPGYG---AELT-EVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKV   79 (340)
T ss_pred             cccCCCC---cEEE-ECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCC
Confidence            3556665   7888 7899999999999999999999999988765421 112345778999999999999999999999


Q ss_pred             CCEEEeccCcccc------------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhc
Q 025278           85 GDEVYGDINEKAL------------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERS  146 (255)
Q Consensus        85 Gd~V~~~~~~~~~------------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~  146 (255)
                      ||+|++..+..+.                  .+....|+|++|++++.+.++++|++++.+++ .++.++.++++++ ..
T Consensus        80 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~-~~  157 (340)
T TIGR00692        80 GDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV-LA  157 (340)
T ss_pred             CCEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH-Hc
Confidence            9999884221000                  01113689999999999999999999998554 5677778888886 34


Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CCCccEEE
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PEKFDVVF  219 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~~d~vi  219 (255)
                      ...+|++|+|.| +|++|.+++++|+.+ |.+ +++++++++|.+.++++|++.++++...++.+    .  .+++|++|
T Consensus       158 ~~~~g~~vlI~~-~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vl  235 (340)
T TIGR00692       158 GPISGKSVLVTG-AGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFL  235 (340)
T ss_pred             cCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEE
Confidence            567899999987 799999999999996 887 77787888899999999998888876554322    1  24799999


Q ss_pred             ECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          220 DAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       220 d~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ||+|+........++++ .+|+++.+|...
T Consensus       236 d~~g~~~~~~~~~~~l~-~~g~~v~~g~~~  264 (340)
T TIGR00692       236 EMSGAPKALEQGLQAVT-PGGRVSLLGLPP  264 (340)
T ss_pred             ECCCCHHHHHHHHHhhc-CCCEEEEEccCC
Confidence            99997665666677777 789999999764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.97  E-value=2.6e-29  Score=214.23  Aligned_cols=234  Identities=35%  Similarity=0.512  Sum_probs=196.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+.+..++.. ..++++ +.+.|.+.+++++||+.++++|+.|+....+.++.. ..+|.++|||++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~vg~~~~   77 (325)
T TIGR02824         1 MKAIEITEPGGP-EVLVLV-EVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPP-PGASDILGLEVAGEVVAVGEGVS   77 (325)
T ss_pred             CceEEEccCCCc-ccceEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC-CCCCCCccceeEEEEEEeCCCCC
Confidence            899999887766 566777 667677899999999999999999999887765422 33478899999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga  159 (255)
                      ++++||+|++..         .+|+|++|+.++...++++|+++++.+++.++++..++|+++ +...+.++++|+|+|+
T Consensus        78 ~~~~Gd~V~~~~---------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~  148 (325)
T TIGR02824        78 RWKVGDRVCALV---------AGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGG  148 (325)
T ss_pred             CCCCCCEEEEcc---------CCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            999999999864         148999999999999999999999988888999999999987 5688999999999999


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++++++++.+ |++++++.+++++.+.++++|.+.+++....++.+    .  .+++|+++|++|+.. ...+..
T Consensus       149 ~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~  226 (325)
T TIGR02824       149 ASGIGTTAIQLAKAF-GARVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGSY-LNRNIK  226 (325)
T ss_pred             cchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECCchHH-HHHHHH
Confidence            999999999999995 99999999999999989999988887765433222    1  247999999999753 344455


Q ss_pred             ccccCCceEEEEeecc
Q 025278          234 CDKFQEKSLINFGLFR  249 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~  249 (255)
                      +++ .+|+++.+|...
T Consensus       227 ~l~-~~g~~v~~g~~~  241 (325)
T TIGR02824       227 ALA-LDGRIVQIGFQG  241 (325)
T ss_pred             hhc-cCcEEEEEecCC
Confidence            565 689999998754

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=2.7e-29  Score=214.44  Aligned_cols=239  Identities=35%  Similarity=0.486  Sum_probs=199.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++...+.+ ..++++ +.+.|.+.+++++|++.++++|+.|+....+.++.. ..+|.++|||++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~   77 (328)
T cd08268           1 MRAVRFHQFGGP-EVLRIE-ELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEP-PPLPARLGYEAAGVVEAVGAGVT   77 (328)
T ss_pred             CeEEEEeccCCc-ceeEEe-ecCCCCCCCCeEEEEEEEEecChHHhheeccccCCC-CCCCCCCCcceEEEEEeeCCCCC
Confidence            899999987765 567887 777788999999999999999999998877765322 34578899999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                      ++++||+|.+....    .....|+|++|+.++.+.++++|++++.++++.++++..++|+++. ...+.++++++|+|+
T Consensus        78 ~~~~Gd~V~~~~~~----~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~  153 (328)
T cd08268          78 GFAVGDRVSVIPAA----DLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAA  153 (328)
T ss_pred             cCCCCCEEEecccc----ccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecC
Confidence            99999999986421    1123589999999999999999999999999999999999999984 678889999999998


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++++++++.. |++++.+++++++.+.++++|.+.+++....++..    .  .+++|++||++|+.. ...+..
T Consensus       154 ~~~~g~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~  231 (328)
T cd08268         154 SSSVGLAAIQIANAA-GATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGPQ-FAKLAD  231 (328)
T ss_pred             ccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCchHh-HHHHHH
Confidence            899999999999995 99999999999999999889988888776543322    1  237999999999844 444456


Q ss_pred             ccccCCceEEEEeecc
Q 025278          234 CDKFQEKSLINFGLFR  249 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~  249 (255)
                      +++ .+|+++.+|...
T Consensus       232 ~l~-~~g~~v~~g~~~  246 (328)
T cd08268         232 ALA-PGGTLVVYGALS  246 (328)
T ss_pred             hhc-cCCEEEEEEeCC
Confidence            666 789999998754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.97  E-value=2.3e-29  Score=215.91  Aligned_cols=231  Identities=28%  Similarity=0.321  Sum_probs=186.3

Q ss_pred             eEEEEcccCC---CccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC-CCCCCCcccccceEEEEEEeCC
Q 025278            2 KAWVYKEYGN---SQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA-TDSPLPTIPGYDVAGVVEKVGS   77 (255)
Q Consensus         2 ka~v~~~~~~---~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~~G~   77 (255)
                      |||+++...+   ....++++ +.+.|++.++||+||+.++++|+.|.....+.... .+...+.++|+|++|+|+++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           3 RQVVLAKRPEGPPPPDDFELV-EVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             cEEEEeccCCCCCCccceeEE-eccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            6888876652   23678998 88999999999999999999999887665543211 1112356789999999999996


Q ss_pred             CCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeC-CceEeCCCCCC--HHhhhc-cchhHHHHHHHHH-hcccCCCC
Q 025278           78 QVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEE-NLLALKPKNLS--FVEAAS-LPLATETAYEGLE-RSAFSAGK  152 (255)
Q Consensus        78 ~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~lp~~~~--~~~aa~-l~~~~~ta~~~l~-~~~~~~g~  152 (255)
                      +  ++++||||+..            ++|++|+.++. +.++++|++++  ..+++. ++++..|+|+++. ...+.+++
T Consensus        82 ~--~~~~Gd~V~~~------------~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~  147 (329)
T cd05288          82 P--DFKVGDLVSGF------------LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGE  147 (329)
T ss_pred             C--CCCCCCEEecc------------cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCC
Confidence            4  79999999973            58999999999 99999999985  444444 8889999999984 57789999


Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCCEEEcCCCccccc----c-CCCccEEEECCCCcc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADLAIDYTKENIED----L-PEKFDVVFDAVGKMC  226 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~----~-~~~~d~vid~~G~~~  226 (255)
                      +|+|+|++|++|++++++|+.+ |++++++++++++.+.+++ +|++.++++.+.++.+    . .+++|++|||+|+. 
T Consensus       148 ~vlI~g~~g~ig~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g~~-  225 (329)
T cd05288         148 TVVVSAAAGAVGSVVGQIAKLL-GARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGGE-  225 (329)
T ss_pred             EEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcchHH-
Confidence            9999999999999999999995 9999999999999999988 9999999887644322    1 25799999999974 


Q ss_pred             ceeeeeeccccCCceEEEEeeccC
Q 025278          227 ISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       227 ~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ....+.+.++ .+|+++.+|....
T Consensus       226 ~~~~~~~~l~-~~G~~v~~g~~~~  248 (329)
T cd05288         226 ILDAALTLLN-KGGRIALCGAISQ  248 (329)
T ss_pred             HHHHHHHhcC-CCceEEEEeeccC
Confidence            3445566666 7899999997653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.97  E-value=4.6e-30  Score=208.09  Aligned_cols=217  Identities=29%  Similarity=0.368  Sum_probs=176.6

Q ss_pred             cceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCC-CCCCcccccceEEEEEEe--CCCCCCCCCCCEEEe
Q 025278           14 SVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATD-SPLPTIPGYDVAGVVEKV--GSQVKKFKVGDEVYG   90 (255)
Q Consensus        14 ~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~-~~~p~~~G~e~~G~V~~~--G~~v~~~~~Gd~V~~   90 (255)
                      +.|+++ +.+.|+|++||||+|++|.++++.    ++|.+...+ -..|.-+|-..+|.++..  -|+.+.|++||.|..
T Consensus        25 d~F~le-e~~vp~p~~GqvLl~~~ylS~DPy----mRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~   99 (340)
T COG2130          25 DDFRLE-EVDVPEPGEGQVLLRTLYLSLDPY----MRGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVG   99 (340)
T ss_pred             CCceeE-eccCCCCCcCceEEEEEEeccCHH----HeecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEe
Confidence            358999 899999999999999999999994    344433222 234566777665443332  267888999999998


Q ss_pred             ccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCH--HhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHH
Q 025278           91 DINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSF--VEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMV  167 (255)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~--~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a  167 (255)
                      .            .+|++|.+++.+.+.++.+..-+  .....+.++..|||.+| +..+.++|++|+|.+|+|++|..+
T Consensus       100 ~------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvv  167 (340)
T COG2130         100 V------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVV  167 (340)
T ss_pred             c------------ccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHH
Confidence            4            58999999999999999754322  23455688999999999 578999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEecChhhHHHHHH-cCCCEEEcCCCcccccc-----CCCccEEEECCCCccceeeeeeccccCCce
Q 025278          168 IQLAKHVFGASKVAATSSTAKLDLLRS-LGADLAIDYTKENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQEKS  241 (255)
Q Consensus       168 ~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~  241 (255)
                      .|+||. .|++|+.+..++||.+++++ +|.|.++||.++++.+.     ++|+|+.||++|++..... +..+. ..+|
T Consensus       168 gQiAKl-kG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVGg~v~DAv-~~~ln-~~aR  244 (340)
T COG2130         168 GQIAKL-KGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGGEVLDAV-LPLLN-LFAR  244 (340)
T ss_pred             HHHHHh-hCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCCchHHHHH-HHhhc-cccc
Confidence            999998 59999999999999999986 99999999999887653     6799999999999875444 44454 6799


Q ss_pred             EEEEeeccC
Q 025278          242 LINFGLFRQ  250 (255)
Q Consensus       242 ~v~~G~~~~  250 (255)
                      +..+|.-++
T Consensus       245 i~~CG~IS~  253 (340)
T COG2130         245 IPVCGAISQ  253 (340)
T ss_pred             eeeeeehhh
Confidence            999998875

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=5.9e-29  Score=211.94  Aligned_cols=235  Identities=42%  Similarity=0.624  Sum_probs=188.3

Q ss_pred             EEcccCCCccce--EEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCC-CCCCCcccccceEEEEEEeCCCCCC
Q 025278            5 VYKEYGNSQSVL--KFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSAT-DSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         5 v~~~~~~~~~~l--~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~-~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      +++..++. +++  +++ +.+.|++.++||+|+++++++|++|+..+.|.++.. ....|..+|||++|+|+++|+++.+
T Consensus         2 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~   79 (319)
T cd08267           2 VYTRYGSP-EVLLLLEV-EVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTR   79 (319)
T ss_pred             eeCCCCCh-hhhhhccc-cCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCC
Confidence            45566665 343  777 788999999999999999999999999988765211 1234678999999999999999999


Q ss_pred             CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHh-cccCCCCEEEEEcCC
Q 025278           82 FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-SAFSAGKSILVLGGA  160 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlI~ga~  160 (255)
                      +++||+|++....      ...|+|++|+.++.+.++++|++++.++++.+++++.+||+++.. ..+++|++|+|+|++
T Consensus        80 ~~~Gd~V~~~~~~------~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~  153 (319)
T cd08267          80 FKVGDEVFGRLPP------KGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGAS  153 (319)
T ss_pred             CCCCCEEEEeccC------CCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            9999999986420      125899999999999999999999999999999999999999854 558999999999988


Q ss_pred             chHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc---ccCCCccEEEECCCCcc-ceeeeeeccc
Q 025278          161 GGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE---DLPEKFDVVFDAVGKMC-ISIVYQKCDK  236 (255)
Q Consensus       161 g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~---~~~~~~d~vid~~G~~~-~~~~~~~~~~  236 (255)
                      |++|++++++|+.+ |++++.++.+ ++.+.++++|++++++....++.   ...+++|+++||+|+.. ........++
T Consensus       154 g~~g~~~~~la~~~-g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~  231 (319)
T cd08267         154 GGVGTFAVQIAKAL-GAHVTGVCST-RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNSPFSLYRASLALK  231 (319)
T ss_pred             cHHHHHHHHHHHHc-CCEEEEEeCH-HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCCchHHHHHHhhhccC
Confidence            99999999999996 9999988865 88888899999888877654431   12347999999999532 1122222254


Q ss_pred             cCCceEEEEeeccC
Q 025278          237 FQEKSLINFGLFRQ  250 (255)
Q Consensus       237 ~~~G~~v~~G~~~~  250 (255)
                       ++|+++.+|....
T Consensus       232 -~~g~~i~~g~~~~  244 (319)
T cd08267         232 -PGGRYVSVGGGPS  244 (319)
T ss_pred             -CCCEEEEeccccc
Confidence             6899999987643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.97  E-value=1e-29  Score=213.75  Aligned_cols=184  Identities=22%  Similarity=0.211  Sum_probs=152.8

Q ss_pred             ccccceEEEEEEeCCCCC------CCCCCCEEEeccCccc------------------cCC-------CCCCcceeeEEe
Q 025278           63 IPGYDVAGVVEKVGSQVK------KFKVGDEVYGDINEKA------------------LDH-------PKRNGSLAEYTA  111 (255)
Q Consensus        63 ~~G~e~~G~V~~~G~~v~------~~~~Gd~V~~~~~~~~------------------~~~-------~~~~g~~~~~~~  111 (255)
                      ++|||++|+|+++|++++      ++++||||+..+...+                  ..+       ...+|+|+||++
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~   80 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH   80 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence            589999999999999998      8999999976432110                  001       113699999999


Q ss_pred             eeCC-ceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhH
Q 025278          112 VEEN-LLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKL  189 (255)
Q Consensus       112 ~~~~-~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~  189 (255)
                      +|.. .++++|+++++++++.++++..|+|+++++....+|++|+|+| +|++|++++|+|+++ |++ +++++++++|+
T Consensus        81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G-~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~  158 (280)
T TIGR03366        81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVG-AGMLGLTAAAAAAAA-GAARVVAADPSPDRR  158 (280)
T ss_pred             ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEECCCHHHH
Confidence            9997 7999999999999998888989999999877777999999998 699999999999996 876 88888899999


Q ss_pred             HHHHHcCCCEEEcCCCcc--cccc--CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          190 DLLRSLGADLAIDYTKEN--IEDL--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       190 ~~~~~~g~~~v~~~~~~~--~~~~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ++++++|++.++++.+..  ..+.  ..++|++||++|.......+.++++ ++|+++.+|...
T Consensus       159 ~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~-~~G~iv~~G~~~  221 (280)
T TIGR03366       159 ELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLD-VGGTAVLAGSVF  221 (280)
T ss_pred             HHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhc-CCCEEEEeccCC
Confidence            999999999998865421  1111  2479999999998877777888888 899999999764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=5e-29  Score=207.38  Aligned_cols=216  Identities=37%  Similarity=0.473  Sum_probs=179.5

Q ss_pred             eEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeccCcc--------------c
Q 025278           31 QVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEK--------------A   96 (255)
Q Consensus        31 eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~--------------~   96 (255)
                      ||+||+.++++|+.|+..+.|..+ .....|.++|||++|+|+++|++++.+++||+|+......              .
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~   79 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYP-PPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGG   79 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCC-cCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCC
Confidence            689999999999999999988754 2345578899999999999999999999999999865321              1


Q ss_pred             cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHh-cccCCCCEEEEEcCCchHHHHHHHHHHHhc
Q 025278           97 LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-SAFSAGKSILVLGGAGGVGTMVIQLAKHVF  175 (255)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~  175 (255)
                      ..+....|+|++|+.++.+.++++|+++++++++.+++++.+||+++.. ..++++++|+|+|+.+ +|++++++++.. 
T Consensus        80 ~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~-  157 (271)
T cd05188          80 ILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAA-  157 (271)
T ss_pred             EeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHc-
Confidence            1222346899999999999999999999999999999999999999965 4558999999999655 999999999995 


Q ss_pred             CCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc-----CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          176 GASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       176 g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |.+++++++++++.+.++++|++.++++.+....+.     .+++|++||++|+......+.+.++ ++|+++.+|....
T Consensus       158 g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~  236 (271)
T cd05188         158 GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLR-PGGRIVVVGGTSG  236 (271)
T ss_pred             CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhcc-cCCEEEEEccCCC
Confidence            899999999999999999999988888765544321     3579999999998444555566666 7899999997654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=1.6e-28  Score=208.99  Aligned_cols=234  Identities=41%  Similarity=0.575  Sum_probs=195.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCC-CCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~-~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++..++.. ..+++. +.+ |.+. +++++||+.++++|++|+..+.|.+.. ....|.++|||++|+|+.+|+++
T Consensus         1 ~~~~~~~~~~~~-~~~~~~-~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~g~~~   76 (323)
T cd08241           1 MKAVVCKELGGP-EDLVLE-EVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQV-KPPLPFVPGSEVAGVVEAVGEGV   76 (323)
T ss_pred             CeEEEEecCCCc-ceeEEe-cCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCC-CCCCCCcccceeEEEEEEeCCCC
Confidence            899999877665 557787 677 7666 499999999999999999988876531 22346789999999999999999


Q ss_pred             CCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEc
Q 025278           80 KKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLG  158 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~g  158 (255)
                      ..+++||+|++..         ..|+|++|+.++.+.++++|++++..+++.+.++..+||+++. ...++++++|+|+|
T Consensus        77 ~~~~~G~~V~~~~---------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g  147 (323)
T cd08241          77 TGFKVGDRVVALT---------GQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLG  147 (323)
T ss_pred             CCCCCCCEEEEec---------CCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEc
Confidence            9999999999864         1489999999999999999999998888888889999999985 67889999999999


Q ss_pred             CCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeee
Q 025278          159 GAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQ  232 (255)
Q Consensus       159 a~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~  232 (255)
                      ++|++|++++++|+.. |++++.+++++++.+.++++|++.+++....++.+.      .+++|.++|++|+. ....+.
T Consensus       148 ~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g~~-~~~~~~  225 (323)
T cd08241         148 AAGGVGLAAVQLAKAL-GARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGD-VFEASL  225 (323)
T ss_pred             CCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECccHH-HHHHHH
Confidence            8899999999999995 999999999999999999999888887765443221      24799999999973 344456


Q ss_pred             eccccCCceEEEEeeccC
Q 025278          233 KCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       233 ~~~~~~~G~~v~~G~~~~  250 (255)
                      .+++ .+|+++.+|....
T Consensus       226 ~~~~-~~g~~v~~~~~~~  242 (323)
T cd08241         226 RSLA-WGGRLLVIGFASG  242 (323)
T ss_pred             Hhhc-cCCEEEEEccCCC
Confidence            6666 6899999997554

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08251 polyketide_synthase polyketide synthase

Probab=99.97  E-value=1e-28  Score=208.75  Aligned_cols=215  Identities=32%  Similarity=0.489  Sum_probs=184.5

Q ss_pred             CCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeccCccccCCCCCC
Q 025278           24 VPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRN  103 (255)
Q Consensus        24 ~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~  103 (255)
                      .|++.+++++||+.++++|+.|+..+.+.++. ...+|.++|||++|+|+++|++++++++||+|++...       ...
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-------~~~   73 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPT-MPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG-------ESM   73 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCC-CCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-------CCC
Confidence            46789999999999999999999999887642 2356889999999999999999999999999998642       135


Q ss_pred             cceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe
Q 025278          104 GSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT  183 (255)
Q Consensus       104 g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~  183 (255)
                      |+|++|+.++.+.++++|++++.++++.++.++.++|++++...+++|++|+|+++++++|++++++++++ |+++++++
T Consensus        74 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~-g~~v~~~~  152 (303)
T cd08251          74 GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLK-GAEIYATA  152 (303)
T ss_pred             cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHHhcCCCCCCEEEEecCCcHHHHHHHHHHHHc-CCEEEEEc
Confidence            89999999999999999999999999999999999999998888999999999999999999999999996 99999999


Q ss_pred             cChhhHHHHHHcCCCEEEcCCCccccc----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          184 SSTAKLDLLRSLGADLAIDYTKENIED----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       184 ~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +++++.+.++++|++.+++....++.+    .  .+++|+++|++++.. .....++++ .+|+++.+|..+
T Consensus       153 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~~~-~~~~~~~l~-~~g~~v~~~~~~  222 (303)
T cd08251         153 SSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSGEA-IQKGLNCLA-PGGRYVEIAMTA  222 (303)
T ss_pred             CCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcHHH-HHHHHHHhc-cCcEEEEEeccC
Confidence            999999999999999998876544322    1  247999999998643 344456666 689999998754

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=9.9e-28  Score=205.89  Aligned_cols=232  Identities=34%  Similarity=0.479  Sum_probs=189.5

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      ||+++...+.. ..++++ +.+.|+|.++||+||+.++++|++|...+.|.++. ....|.++|||++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~g~~~~~   77 (337)
T cd08275           1 RAVVLTGFGGL-DKLKVE-KEALPEPSSGEVRVRVEACGLNFADLMARQGLYDS-APKPPFVPGFECAGTVEAVGEGVKD   77 (337)
T ss_pred             CeEEEcCCCCc-cceEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCCCCCcceeEEEEEEECCCCcC
Confidence            67888777765 567887 67778899999999999999999999988876532 2345778999999999999999999


Q ss_pred             CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCC
Q 025278           82 FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGA  160 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~  160 (255)
                      +++||+|++...         .|+|++|+.++.+.++++|+++++.+++.++++..++|+++ +...+++|++|+|+|++
T Consensus        78 ~~~G~~V~~~~~---------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~  148 (337)
T cd08275          78 FKVGDRVMGLTR---------FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAA  148 (337)
T ss_pred             CCCCCEEEEecC---------CCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCc
Confidence            999999998642         48999999999999999999999999888899999999998 46789999999999988


Q ss_pred             chHHHHHHHHHHHhcCCcEEEE-ecChhhHHHHHHcCCCEEEcCCCccccc-----cCCCccEEEECCCCccceeeeeec
Q 025278          161 GGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLLRSLGADLAIDYTKENIED-----LPEKFDVVFDAVGKMCISIVYQKC  234 (255)
Q Consensus       161 g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~-----~~~~~d~vid~~G~~~~~~~~~~~  234 (255)
                      |++|++++++|+.+ .. +.++ ..++++.++++++|++.+++....++.+     ..+++|+++|++|+.. ...+.++
T Consensus       149 g~~g~~~~~~a~~~-~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~-~~~~~~~  225 (337)
T cd08275         149 GGVGLAAGQLCKTV-PN-VTVVGTASASKHEALKENGVTHVIDYRTQDYVEEVKKISPEGVDIVLDALGGED-TRKSYDL  225 (337)
T ss_pred             chHHHHHHHHHHHc-cC-cEEEEeCCHHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhCCCceEEEECCcHHH-HHHHHHh
Confidence            99999999999985 22 2333 2345688888889998888876544322     1357999999999764 4455666


Q ss_pred             cccCCceEEEEeecc
Q 025278          235 DKFQEKSLINFGLFR  249 (255)
Q Consensus       235 ~~~~~G~~v~~G~~~  249 (255)
                      ++ .+|+++.+|...
T Consensus       226 l~-~~g~~v~~g~~~  239 (337)
T cd08275         226 LK-PMGRLVVYGAAN  239 (337)
T ss_pred             hc-cCcEEEEEeecC
Confidence            76 689999999764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.96  E-value=4e-27  Score=197.29  Aligned_cols=203  Identities=35%  Similarity=0.482  Sum_probs=175.6

Q ss_pred             CeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeccCccccCCCCCCcceeeE
Q 025278           30 DQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEY  109 (255)
Q Consensus        30 ~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~  109 (255)
                      +||+||+.++++|++|++...|.+    ..+|.++|||++|+|+++|++++.+++||+|++..          .|+|++|
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~----~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~----------~g~~~~~   66 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLL----PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA----------PGAFATH   66 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCC----CCCCCccceeeeEEEEeecCCccCCCCCCEEEEEe----------cCcccce
Confidence            579999999999999999988764    24578999999999999999999999999999864          4899999


Q ss_pred             EeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh
Q 025278          110 TAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK  188 (255)
Q Consensus       110 ~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~  188 (255)
                      +.++.+.++++|+++++.+++.++++..++|+++ +...+++|++|+|+|++|++|++++++|+.+ |++++.++.++++
T Consensus        67 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~-g~~v~~~~~~~~~  145 (293)
T cd05195          67 VRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHL-GAEVFATVGSEEK  145 (293)
T ss_pred             EEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHc-CCEEEEEeCCHHH
Confidence            9999999999999999999999999999999998 4578999999999998999999999999995 9999999999999


Q ss_pred             HHHHHHcC--CCEEEcCCCccccc----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          189 LDLLRSLG--ADLAIDYTKENIED----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       189 ~~~~~~~g--~~~v~~~~~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .+.++++|  ++.++++...++.+    .  .+++|++||++|+. ....+.++++ .+|+++.+|...
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~-~~g~~v~~g~~~  212 (293)
T cd05195         146 REFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGE-LLRASWRCLA-PFGRFVEIGKRD  212 (293)
T ss_pred             HHHHHHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCCCch-HHHHHHHhcc-cCceEEEeeccc
Confidence            99998888  77888765543322    1  34799999999987 4556677776 689999998765

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.95  E-value=2.9e-26  Score=191.94  Aligned_cols=198  Identities=34%  Similarity=0.483  Sum_probs=170.7

Q ss_pred             EEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeee
Q 025278           34 IKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVE  113 (255)
Q Consensus        34 V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~  113 (255)
                      ||+.++++|++|++...|.++     .|.++|||++|+|+++|++++.+++||+|++..          .|+|++|+.++
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~-----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------~g~~~~~~~~~   66 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP-----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------PGSFATYVRTD   66 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC-----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc----------CCceeeEEEcc
Confidence            789999999999999887643     367899999999999999999999999999864          48999999999


Q ss_pred             CCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          114 ENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       114 ~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      .+.++++|+++++.+++.++++..++|+++ +...+++|++|+|+|++|++|++++++++.+ |++++.+++++++.+.+
T Consensus        67 ~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~  145 (288)
T smart00829       67 ARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHL-GAEVFATAGSPEKRDFL  145 (288)
T ss_pred             HHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH
Confidence            999999999999999999999999999998 6688999999999999999999999999995 99999999999999999


Q ss_pred             HHcCC--CEEEcCCCcccccc------CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          193 RSLGA--DLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       193 ~~~g~--~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +++|+  +.++++.+.++.+.      .+++|++||++|+. ....+..+++ .+|+++.+|...
T Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~-~~g~~v~~g~~~  208 (288)
T smart00829      146 RELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLAGE-FLDASLRCLA-PGGRFVEIGKRD  208 (288)
T ss_pred             HHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEeCCCHH-HHHHHHHhcc-CCcEEEEEcCcC
Confidence            99998  77887765443221      24799999999964 3445566666 689999998653

Enoylreductase in Polyketide synthases.

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.93  E-value=5.6e-24  Score=172.28  Aligned_cols=208  Identities=27%  Similarity=0.380  Sum_probs=164.8

Q ss_pred             CCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCccccc----ceEEEEEEeCCCCCCCCCCCEEEeccCccccCCC
Q 025278           25 PSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGY----DVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHP  100 (255)
Q Consensus        25 p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~----e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~  100 (255)
                      .++++++|+||.+|.+.++.....++...+. .--.|+.+|.    .++|+|++  ++.+++++||.|.+..        
T Consensus        33 ~~~~s~~vlvknlYLS~DPymR~rM~~~~~~-~y~~~~~~G~pi~g~GV~kVi~--S~~~~~~~GD~v~g~~--------  101 (343)
T KOG1196|consen   33 VPLGSGEVLVKNLYLSCDPYMRIRMGKPDPS-DYAPPYEPGKPIDGFGVAKVID--SGHPNYKKGDLVWGIV--------  101 (343)
T ss_pred             CCCCCccEEeEeeeecCCHHHHhhccCCCcc-cccCcccCCcEecCCceEEEEe--cCCCCCCcCceEEEec--------
Confidence            4579999999999999999866555433221 1222344443    67899998  5778899999999964        


Q ss_pred             CCCcceeeEEeeeCC--ceEeCC--CCCCHHhh-hccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHh
Q 025278          101 KRNGSLAEYTAVEEN--LLALKP--KNLSFVEA-ASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHV  174 (255)
Q Consensus       101 ~~~g~~~~~~~~~~~--~~~~lp--~~~~~~~a-a~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~  174 (255)
                          +|.||.+++..  ..++++  .+.++... .++.++.+|||-++ +...++.|++|+|.||+|++|+++.|+|+.+
T Consensus       102 ----gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~  177 (343)
T KOG1196|consen  102 ----GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLM  177 (343)
T ss_pred             ----cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhc
Confidence                79999999765  334444  34554443 45688999999998 6788999999999999999999999999997


Q ss_pred             cCCcEEEEecChhhHHHHH-HcCCCEEEcCCCc-ccccc-----CCCccEEEECCCCccceeeeeeccccCCceEEEEee
Q 025278          175 FGASKVAATSSTAKLDLLR-SLGADLAIDYTKE-NIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       175 ~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~-~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                       |++|+.+..++||..+++ ++|.|.++||.++ +..+.     .+|+|+.||.+|+.-.....+.|.  .+||++.+|.
T Consensus       178 -Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~--~~gri~~CG~  254 (343)
T KOG1196|consen  178 -GCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMN--LHGRIAVCGM  254 (343)
T ss_pred             -CCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhh--hccceEeeee
Confidence             999999999999999986 6899999999887 44332     579999999999987665555555  6799999999


Q ss_pred             ccC
Q 025278          248 FRQ  250 (255)
Q Consensus       248 ~~~  250 (255)
                      -++
T Consensus       255 ISq  257 (343)
T KOG1196|consen  255 ISQ  257 (343)
T ss_pred             ehh
Confidence            885

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.92  E-value=4e-24  Score=179.24  Aligned_cols=176  Identities=33%  Similarity=0.412  Sum_probs=149.9

Q ss_pred             CCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhH
Q 025278           57 DSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLAT  136 (255)
Q Consensus        57 ~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~  136 (255)
                      +.++|.++|||++|+|+++|++++++++||+|++.            +.|++|+.++.+.++++|++++.++++.+ .++
T Consensus        17 ~~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~------------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~   83 (277)
T cd08255          17 KLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF------------GPHAERVVVPANLLVPLPDGLPPERAALT-ALA   83 (277)
T ss_pred             cCcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec------------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHH
Confidence            35678999999999999999999999999999985            35999999999999999999999888887 788


Q ss_pred             HHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcC-CCEEEcCCCccccccCCC
Q 025278          137 ETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLG-ADLAIDYTKENIEDLPEK  214 (255)
Q Consensus       137 ~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~  214 (255)
                      .+||+++...++++|++++|+| +|++|++++++|+.+ |.+ +++++++++++++++++| ++.+++......  ..++
T Consensus        84 ~ta~~~~~~~~~~~g~~vlI~g-~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~  159 (277)
T cd08255          84 ATALNGVRDAEPRLGERVAVVG-LGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPVAADTADEI--GGRG  159 (277)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccccccchhhh--cCCC
Confidence            9999999888899999999997 799999999999996 888 999999999999999999 666665432111  2347


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +|++||++|...........++ .+|+++.+|....
T Consensus       160 ~d~vl~~~~~~~~~~~~~~~l~-~~g~~~~~g~~~~  194 (277)
T cd08255         160 ADVVIEASGSPSALETALRLLR-DRGRVVLVGWYGL  194 (277)
T ss_pred             CCEEEEccCChHHHHHHHHHhc-CCcEEEEEeccCC
Confidence            9999999997665566677776 7899999997654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.83  E-value=6.8e-21  Score=176.02  Aligned_cols=216  Identities=23%  Similarity=0.309  Sum_probs=181.1

Q ss_pred             CCCccceEEeecccCC---CCCCCeEEEEEeEeecChHhHHHHcCCCCC-----CCCCCCcccccceEEEEEEeCCCCCC
Q 025278           10 GNSQSVLKFETNVEVP---SLREDQVLIKVVAAALNPIDFKRMLGAFSA-----TDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus        10 ~~~~~~l~~~~~~~~p---~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~-----~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      |+. +.++|. +.+..   +..++.=+..|.|+.||..|+....|+++.     .......++|.|++|+          
T Consensus      1424 GDl-sSlrWi-es~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR---------- 1491 (2376)
T KOG1202|consen 1424 GDL-SSLRWI-ESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR---------- 1491 (2376)
T ss_pred             ccc-cceeee-ecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------
Confidence            555 678888 66654   457777789999999999999999998642     2234458899999998          


Q ss_pred             CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCC
Q 025278           82 FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGA  160 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~  160 (255)
                      .+-|.||+++.+         .-++++.+.++.+.++.+|++..+++|+..|+-+.|+||++ .+...++|+++|||+++
T Consensus      1492 d~~GrRvM~mvp---------AksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGs 1562 (2376)
T KOG1202|consen 1492 DASGRRVMGMVP---------AKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGS 1562 (2376)
T ss_pred             cCCCcEEEEeee---------hhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCC
Confidence            567999999864         56889999999999999999999999999999999999998 68899999999999999


Q ss_pred             chHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCEEEcCCCcccccc------CCCccEEEECCCCccceee
Q 025278          161 GGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIV  230 (255)
Q Consensus       161 g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~  230 (255)
                      |++|++|+.+|.+. |++|+.++.+.||++++.+    +...++-|+++.+|+..      .+|+|+|+|+...+. ...
T Consensus      1563 GGVGQAAIaiALa~-G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdtsFEq~vl~~T~GrGVdlVLNSLaeEk-LQA 1640 (2376)
T KOG1202|consen 1563 GGVGQAAIAIALAH-GCTVFTTVGSAEKREFLLKRFPQLQETNFANSRDTSFEQHVLWHTKGRGVDLVLNSLAEEK-LQA 1640 (2376)
T ss_pred             CchhHHHHHHHHHc-CCEEEEecCcHHHHHHHHHhchhhhhhcccccccccHHHHHHHHhcCCCeeeehhhhhHHH-HHH
Confidence            99999999999995 9999999999999999853    44667778888877653      468999999877554 344


Q ss_pred             eeeccccCCceEEEEeecc
Q 025278          231 YQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       231 ~~~~~~~~~G~~v~~G~~~  249 (255)
                      +++++. .+||+..+|-+.
T Consensus      1641 SiRCLa-~~GRFLEIGKfD 1658 (2376)
T KOG1202|consen 1641 SIRCLA-LHGRFLEIGKFD 1658 (2376)
T ss_pred             HHHHHH-hcCeeeeeccee
Confidence            577776 689999999875

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.81  E-value=2e-19  Score=129.94  Aligned_cols=91  Identities=33%  Similarity=0.367  Sum_probs=74.2

Q ss_pred             CCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeccCc--------------
Q 025278           29 EDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINE--------------   94 (255)
Q Consensus        29 ~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~--------------   94 (255)
                      |+||+||++++|||++|+++++|.. ......|.++|||++|+|+++|+++++|++||||+..+..              
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~-~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~   79 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGP-PPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPN   79 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSS-SSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhcc-ccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCccc
Confidence            6899999999999999999999852 2456889999999999999999999999999999875431              


Q ss_pred             ----cccCCCCCCcceeeEEeeeCCceEeC
Q 025278           95 ----KALDHPKRNGSLAEYTAVEENLLALK  120 (255)
Q Consensus        95 ----~~~~~~~~~g~~~~~~~~~~~~~~~l  120 (255)
                          ....+...+|+|+||+++|.+.++++
T Consensus        80 ~c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   80 LCPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             GTTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             cCCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence                11244457899999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.43  E-value=2.1e-13  Score=101.34  Aligned_cols=86  Identities=36%  Similarity=0.511  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc----C--CCccEEEECCCCccceeeeeecc
Q 025278          162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL----P--EKFDVVFDAVGKMCISIVYQKCD  235 (255)
Q Consensus       162 ~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~----~--~~~d~vid~~G~~~~~~~~~~~~  235 (255)
                      ++|++++|+|+.+ |++|++++++++|++.++++|+++++++++.++.+.    .  +++|+||||+|.......+..++
T Consensus         1 ~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l   79 (130)
T PF00107_consen    1 GVGLMAIQLAKAM-GAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLL   79 (130)
T ss_dssp             HHHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHE
T ss_pred             ChHHHHHHHHHHc-CCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHh
Confidence            5899999999996 799999999999999999999999999988765432    2  37999999999888888889999


Q ss_pred             ccCCceEEEEeecc
Q 025278          236 KFQEKSLINFGLFR  249 (255)
Q Consensus       236 ~~~~G~~v~~G~~~  249 (255)
                      + ++|+++.+|..+
T Consensus        80 ~-~~G~~v~vg~~~   92 (130)
T PF00107_consen   80 R-PGGRIVVVGVYG   92 (130)
T ss_dssp             E-EEEEEEEESSTS
T ss_pred             c-cCCEEEEEEccC
Confidence            8 899999999987

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.10  E-value=5.9e-10  Score=99.91  Aligned_cols=98  Identities=18%  Similarity=0.273  Sum_probs=78.6

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCcc-------------c-----
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKEN-------------I-----  208 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~-------------~-----  208 (255)
                      ..++++|+|+| +|.+|+++++.|+.+ |++|+++|.+++|++.++++|++.+ +|..+++             +     
T Consensus       162 ~~pg~kVlViG-aG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~  239 (509)
T PRK09424        162 KVPPAKVLVIG-AGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM  239 (509)
T ss_pred             CcCCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence            45799999999 999999999999996 8899999999999999999999854 6653321             0     


Q ss_pred             ---cccCCCccEEEECCCCcc-----c-eeeeeeccccCCceEEEEeec
Q 025278          209 ---EDLPEKFDVVFDAVGKMC-----I-SIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       209 ---~~~~~~~d~vid~~G~~~-----~-~~~~~~~~~~~~G~~v~~G~~  248 (255)
                         .+..+++|+||+|+|.+.     . ...+.+.++ ++|+++.+|..
T Consensus       240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk-pGgvIVdvg~~  287 (509)
T PRK09424        240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK-PGSVIVDLAAE  287 (509)
T ss_pred             HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC-CCCEEEEEccC
Confidence               111257999999999643     3 255677777 89999999985

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.94  E-value=4e-09  Score=92.36  Aligned_cols=103  Identities=20%  Similarity=0.200  Sum_probs=81.1

Q ss_pred             HHHHH-Hhc-ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCcc
Q 025278          139 AYEGL-ERS-AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       139 a~~~l-~~~-~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d  216 (255)
                      .|.++ +.. ...+|++|+|.| .|.+|+.+++.++.+ |++|++++.++.|++.++++|++.+ +.     .+..+++|
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG-~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~G~~~~-~~-----~e~v~~aD  259 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAMEGYEVM-TM-----EEAVKEGD  259 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhcCCEEc-cH-----HHHHcCCC
Confidence            44555 322 346899999999 999999999999996 8899999999999999999998543 21     22335789


Q ss_pred             EEEECCCCccceeee-eeccccCCceEEEEeeccC
Q 025278          217 VVFDAVGKMCISIVY-QKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       217 ~vid~~G~~~~~~~~-~~~~~~~~G~~v~~G~~~~  250 (255)
                      +||+|+|........ ...++ ++|+++++|.+..
T Consensus       260 VVI~atG~~~~i~~~~l~~mk-~GgilvnvG~~~~  293 (413)
T cd00401         260 IFVTTTGNKDIITGEHFEQMK-DGAIVCNIGHFDV  293 (413)
T ss_pred             EEEECCCCHHHHHHHHHhcCC-CCcEEEEeCCCCC
Confidence            999999987766554 67777 7899999997643

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.60  E-value=2e-07  Score=82.05  Aligned_cols=105  Identities=24%  Similarity=0.289  Sum_probs=79.1

Q ss_pred             HHHHHHHhc-ccC-CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCc
Q 025278          138 TAYEGLERS-AFS-AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKF  215 (255)
Q Consensus       138 ta~~~l~~~-~~~-~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  215 (255)
                      ..|.++.+. ++. .|++|+|.| .|.+|..+++.++.+ |++|+++++++.|...+...|++ +.+     ..+..+++
T Consensus       197 s~~~ai~rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~G~~-v~~-----l~eal~~a  268 (425)
T PRK05476        197 SLLDGIKRATNVLIAGKVVVVAG-YGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMDGFR-VMT-----MEEAAELG  268 (425)
T ss_pred             hhHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhcCCE-ecC-----HHHHHhCC
Confidence            356666544 444 899999999 899999999999996 99999999999887777777765 222     23334589


Q ss_pred             cEEEECCCCcccee-eeeeccccCCceEEEEeeccCC
Q 025278          216 DVVFDAVGKMCISI-VYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       216 d~vid~~G~~~~~~-~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      |+||+++|...... .....++ +++.++++|.+..+
T Consensus       269 DVVI~aTG~~~vI~~~~~~~mK-~GailiNvG~~d~E  304 (425)
T PRK05476        269 DIFVTATGNKDVITAEHMEAMK-DGAILANIGHFDNE  304 (425)
T ss_pred             CEEEECCCCHHHHHHHHHhcCC-CCCEEEEcCCCCCc
Confidence            99999999766443 3455565 67889999987754

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.48  E-value=8e-07  Score=79.79  Aligned_cols=98  Identities=21%  Similarity=0.353  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-------------c-------
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKE-------------N-------  207 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-------------~-------  207 (255)
                      .++++|+|+| +|.+|+++++.++.+ |++|+++++++++++.++++|++.+ ++..+.             +       
T Consensus       162 vp~akVlViG-aG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~  239 (511)
T TIGR00561       162 VPPAKVLVIG-AGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME  239 (511)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence            3578999999 899999999999996 8999999999999999999998763 332110             0       


Q ss_pred             -ccccCCCccEEEECC---CCcc---ceeeeeeccccCCceEEEEeecc
Q 025278          208 -IEDLPEKFDVVFDAV---GKMC---ISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       208 -~~~~~~~~d~vid~~---G~~~---~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                       +.+..+++|++|+|+   |.+.   ......+.++ +++.++.++.-.
T Consensus       240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MK-pGsvIVDlA~d~  287 (511)
T TIGR00561       240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMK-AGSVIVDLAAEQ  287 (511)
T ss_pred             HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCC-CCCEEEEeeeCC
Confidence             112235799999999   6433   3344466666 788888887644

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.38  E-value=1.7e-06  Score=75.87  Aligned_cols=103  Identities=20%  Similarity=0.232  Sum_probs=77.1

Q ss_pred             HHHHHHhc-c-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCcc
Q 025278          139 AYEGLERS-A-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       139 a~~~l~~~-~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d  216 (255)
                      .|.++.+. + ...|++|+|.| .|.+|+.+++.++.+ |++|++++.++.|...++..|+. +.+.     .+..++.|
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~G~~-v~~l-----eeal~~aD  252 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAG-YGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMDGFR-VMTM-----EEAAKIGD  252 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhcCCE-eCCH-----HHHHhcCC
Confidence            44555332 3 46899999999 999999999999985 99999999998887777777863 3221     22345789


Q ss_pred             EEEECCCCccceee-eeeccccCCceEEEEeeccC
Q 025278          217 VVFDAVGKMCISIV-YQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       217 ~vid~~G~~~~~~~-~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++|+++|....... ....++ +++.++++|.+..
T Consensus       253 VVItaTG~~~vI~~~~~~~mK-~GailiN~G~~~~  286 (406)
T TIGR00936       253 IFITATGNKDVIRGEHFENMK-DGAIVANIGHFDV  286 (406)
T ss_pred             EEEECCCCHHHHHHHHHhcCC-CCcEEEEECCCCc
Confidence            99999997765443 455565 6789999988754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.35  E-value=5.5e-06  Score=70.15  Aligned_cols=96  Identities=19%  Similarity=0.311  Sum_probs=71.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .+++|+|+| .|.+|+.+++.++.+ |++|++.++++++++.++++|++.+ ..  .+..+...++|+||+|++......
T Consensus       151 ~g~kvlViG-~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~~G~~~~-~~--~~l~~~l~~aDiVI~t~p~~~i~~  225 (296)
T PRK08306        151 HGSNVLVLG-FGRTGMTLARTLKAL-GANVTVGARKSAHLARITEMGLSPF-HL--SELAEEVGKIDIIFNTIPALVLTK  225 (296)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHcCCeee-cH--HHHHHHhCCCCEEEECCChhhhhH
Confidence            589999999 899999999999996 8999999999998888888987643 21  223344568999999987543333


Q ss_pred             eeeeccccCCceEEEEeeccCC
Q 025278          230 VYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       230 ~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      ...+.++ +++.++.++...+.
T Consensus       226 ~~l~~~~-~g~vIIDla~~pgg  246 (296)
T PRK08306        226 EVLSKMP-PEALIIDLASKPGG  246 (296)
T ss_pred             HHHHcCC-CCcEEEEEccCCCC
Confidence            3334454 56777777765543

>PLN02494 adenosylhomocysteinase

Probab=98.32  E-value=1.8e-06  Score=76.49  Aligned_cols=94  Identities=22%  Similarity=0.245  Sum_probs=74.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc-
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI-  227 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~-  227 (255)
                      -.|++|+|.| .|.+|..+++.++.+ |++|+++++++.+...+...|+..+ +     ..+..+..|++|+++|.... 
T Consensus       252 LaGKtVvViG-yG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~G~~vv-~-----leEal~~ADVVI~tTGt~~vI  323 (477)
T PLN02494        252 IAGKVAVICG-YGDVGKGCAAAMKAA-GARVIVTEIDPICALQALMEGYQVL-T-----LEDVVSEADIFVTTTGNKDII  323 (477)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhcCCeec-c-----HHHHHhhCCEEEECCCCccch
Confidence            6799999999 999999999999985 9999999999888777777777532 1     22334578999999997764 


Q ss_pred             eeeeeeccccCCceEEEEeeccCC
Q 025278          228 SIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       228 ~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      ....+..++ +++.++++|.++.+
T Consensus       324 ~~e~L~~MK-~GAiLiNvGr~~~e  346 (477)
T PLN02494        324 MVDHMRKMK-NNAIVCNIGHFDNE  346 (477)
T ss_pred             HHHHHhcCC-CCCEEEEcCCCCCc
Confidence            345566776 78999999987644

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.25  E-value=1.8e-06  Score=79.68  Aligned_cols=80  Identities=25%  Similarity=0.410  Sum_probs=61.3

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC---------------------hhhHHHHHHcCCCEEEcCCC
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS---------------------TAKLDLLRSLGADLAIDYTK  205 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~---------------------~~~~~~~~~~g~~~v~~~~~  205 (255)
                      ..++|++|+|+| +|++|+++++.++.. |.+|++++..                     +.+++.++++|++..++...
T Consensus       133 ~~~~g~~V~VIG-aGpaGL~aA~~l~~~-G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~  210 (564)
T PRK12771        133 APDTGKRVAVIG-GGPAGLSAAYHLRRM-GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV  210 (564)
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            367899999999 899999999999985 8999998842                     35667788999987777533


Q ss_pred             -cc--ccccCCCccEEEECCCCccce
Q 025278          206 -EN--IEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       206 -~~--~~~~~~~~d~vid~~G~~~~~  228 (255)
                       .+  ......++|+||+++|.....
T Consensus       211 ~~~~~~~~~~~~~D~Vi~AtG~~~~~  236 (564)
T PRK12771        211 GEDITLEQLEGEFDAVFVAIGAQLGK  236 (564)
T ss_pred             CCcCCHHHHHhhCCEEEEeeCCCCCC
Confidence             22  222234799999999976543

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.17  E-value=3e-06  Score=72.35  Aligned_cols=107  Identities=22%  Similarity=0.234  Sum_probs=75.0

Q ss_pred             ceEeCCCCCCHHhhhccchhHHHHHHHHHhccc----CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH-H
Q 025278          116 LLALKPKNLSFVEAASLPLATETAYEGLERSAF----SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL-D  190 (255)
Q Consensus       116 ~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~----~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~-~  190 (255)
                      ..+++|+.+..+.+... .+...++.+++.+..    .++++|+|+| +|.+|.++++.++..++.++++++++++|. +
T Consensus       140 ~a~~~~k~vr~et~i~~-~~~sv~~~Av~~a~~~~~~l~~~~V~ViG-aG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~  217 (311)
T cd05213         140 KAIKVGKRVRTETGISR-GAVSISSAAVELAEKIFGNLKGKKVLVIG-AGEMGELAAKHLAAKGVAEITIANRTYERAEE  217 (311)
T ss_pred             HHHHHHHHHhhhcCCCC-CCcCHHHHHHHHHHHHhCCccCCEEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            44667788777665544 233347777754432    4789999999 799999999999875346777889988875 5


Q ss_pred             HHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          191 LLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       191 ~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      +++++|.. +++..  +..+.....|+||.|++.+..
T Consensus       218 la~~~g~~-~~~~~--~~~~~l~~aDvVi~at~~~~~  251 (311)
T cd05213         218 LAKELGGN-AVPLD--ELLELLNEADVVISATGAPHY  251 (311)
T ss_pred             HHHHcCCe-EEeHH--HHHHHHhcCCEEEECCCCCch
Confidence            67788874 33321  233334578999999998765

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.06  E-value=2.8e-05  Score=64.35  Aligned_cols=146  Identities=19%  Similarity=0.241  Sum_probs=90.1

Q ss_pred             CCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcC
Q 025278           80 KKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGG  159 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga  159 (255)
                      ..+++||+++..+            +|.+|.. +...++.+++++++..+. .+.+. ..+..+. ....++++|+-.| 
T Consensus        65 ~p~~~g~~~~i~p------------~~~~~~~-~~~~~i~i~p~~afgtg~-h~tt~-~~l~~l~-~~~~~~~~VLDiG-  127 (250)
T PRK00517         65 HPIRIGDRLWIVP------------SWEDPPD-PDEINIELDPGMAFGTGT-HPTTR-LCLEALE-KLVLPGKTVLDVG-  127 (250)
T ss_pred             CCEEEcCCEEEEC------------CCcCCCC-CCeEEEEECCCCccCCCC-CHHHH-HHHHHHH-hhcCCCCEEEEeC-
Confidence            4477899888755            4666644 667888999988765433 22221 1222232 2256889999999 


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc----CCCEEEcCCCccccccCCCccEEEECCCCccc---eeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL----GADLAIDYTKENIEDLPEKFDVVFDAVGKMCI---SIVYQ  232 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~---~~~~~  232 (255)
                      +|. |.+++.+++. +..+++++|.++...+.+++.    +....+.     +......+|+|+-+......   ...+.
T Consensus       128 cGs-G~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~~~~l~~~~~  200 (250)
T PRK00517        128 CGS-GILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANPLLELAPDLA  200 (250)
T ss_pred             CcH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHHHHHHHHHHH
Confidence            776 8888876664 344599999999988877542    2211111     00001158999976553322   22345


Q ss_pred             eccccCCceEEEEeeccC
Q 025278          233 KCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       233 ~~~~~~~G~~v~~G~~~~  250 (255)
                      +.++ ++|++++.|....
T Consensus       201 ~~Lk-pgG~lilsgi~~~  217 (250)
T PRK00517        201 RLLK-PGGRLILSGILEE  217 (250)
T ss_pred             HhcC-CCcEEEEEECcHh
Confidence            5566 7999999886543

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=98.05  E-value=2.9e-05  Score=64.13  Aligned_cols=105  Identities=21%  Similarity=0.319  Sum_probs=69.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcC----CC-EEE--cCCCcc-cccc-------C
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLG----AD-LAI--DYTKEN-IEDL-------P  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g----~~-~v~--~~~~~~-~~~~-------~  212 (255)
                      ..+++++|+||++++|...+..+.. +|.+++.+.|+++|++.+. ++.    .. .++  |..+.+ ....       .
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~-~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLAR-RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            5678999999999999987777666 5999999999999998763 333    11 233  322221 1111       1


Q ss_pred             CCccEEEECCC-Cccceee-------------------------eeeccccCCceEEEEeeccCCCCC
Q 025278          213 EKFDVVFDAVG-KMCISIV-------------------------YQKCDKFQEKSLINFGLFRQEVPK  254 (255)
Q Consensus       213 ~~~d~vid~~G-~~~~~~~-------------------------~~~~~~~~~G~~v~~G~~~~~~~~  254 (255)
                      ..+|+.+|++| +......                         ...|.+...|.++.+|...+..|+
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~  150 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPT  150 (265)
T ss_pred             CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCC
Confidence            36999999999 2211110                         122333246999999998876653

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=98.05  E-value=3e-05  Score=62.59  Aligned_cols=101  Identities=23%  Similarity=0.347  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCC----CEEEcCCCccc--------cccCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGA----DLAIDYTKENI--------EDLPEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~----~~v~~~~~~~~--------~~~~~~~d  216 (255)
                      .++.++|+||++++|.+.++..... |++|+.+.|..+|++.+ .+++.    ...+|-.+..-        .+.-+.+|
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~-G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD   83 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEA-GAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRID   83 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHC-CCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence            4588999999999999999999885 99999999999999877 47772    22344443321        11234799


Q ss_pred             EEEECCCCccceee--------------------------eeeccccCCceEEEEeeccCC
Q 025278          217 VVFDAVGKMCISIV--------------------------YQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       217 ~vid~~G~~~~~~~--------------------------~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      ++++..|.......                          .-.|.....|.++.+|...+.
T Consensus        84 iLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~  144 (246)
T COG4221          84 ILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGR  144 (246)
T ss_pred             EEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccc
Confidence            99999994433211                          122333346899998887653

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.00  E-value=5.8e-05  Score=67.18  Aligned_cols=93  Identities=26%  Similarity=0.274  Sum_probs=71.8

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      .-.|++|+|.| .|.+|..+++.++.+ |++|+++++++.+...+...|+..+      ++.+..+..|+|+.++|....
T Consensus       251 ~LaGKtVgVIG-~G~IGr~vA~rL~a~-Ga~ViV~e~dp~~a~~A~~~G~~~~------~leell~~ADIVI~atGt~~i  322 (476)
T PTZ00075        251 MIAGKTVVVCG-YGDVGKGCAQALRGF-GARVVVTEIDPICALQAAMEGYQVV------TLEDVVETADIFVTATGNKDI  322 (476)
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHhcCceec------cHHHHHhcCCEEEECCCcccc
Confidence            45799999999 999999999999985 9999999888777655655676432      233445689999999997664


Q ss_pred             ee-eeeeccccCCceEEEEeecc
Q 025278          228 SI-VYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       228 ~~-~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .. ..+..++ +++.++.+|.+.
T Consensus       323 I~~e~~~~MK-pGAiLINvGr~d  344 (476)
T PTZ00075        323 ITLEHMRRMK-NNAIVGNIGHFD  344 (476)
T ss_pred             cCHHHHhccC-CCcEEEEcCCCc
Confidence            43 4466666 788999999875

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.88  E-value=4.5e-05  Score=67.95  Aligned_cols=153  Identities=20%  Similarity=0.230  Sum_probs=94.9

Q ss_pred             ccccceEEEEEEeCCCCCCCCCCCEEEec--------cCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccch
Q 025278           63 IPGYDVAGVVEKVGSQVKKFKVGDEVYGD--------INEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPL  134 (255)
Q Consensus        63 ~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~  134 (255)
                      .-|||+++.+.+++++.++.-+|..-+.-        +......+....+.|++.+.++        +.+..+.. ....
T Consensus        91 ~~g~ea~~hl~~V~~GldS~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~--------k~v~~~t~-i~~~  161 (423)
T PRK00045         91 HEGEEAVRHLFRVASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVA--------KRVRTETG-IGAG  161 (423)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH--------hhHhhhcC-CCCC
Confidence            46999999999999988775555553210        0011111222234454443333        33322211 1122


Q ss_pred             hHHHHHHHHHhcc----cCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHH-HHHHcCCCEEEcCCCccc
Q 025278          135 ATETAYEGLERSA----FSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLD-LLRSLGADLAIDYTKENI  208 (255)
Q Consensus       135 ~~~ta~~~l~~~~----~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~-~~~~~g~~~v~~~~~~~~  208 (255)
                      +...++.+++...    ..++++|+|+| +|.+|.++++.++.. |. +++++.++.++.+ +++++|.+ +++.  .+.
T Consensus       162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViG-aG~iG~~~a~~L~~~-G~~~V~v~~r~~~ra~~la~~~g~~-~~~~--~~~  236 (423)
T PRK00045        162 AVSVASAAVELAKQIFGDLSGKKVLVIG-AGEMGELVAKHLAEK-GVRKITVANRTLERAEELAEEFGGE-AIPL--DEL  236 (423)
T ss_pred             CcCHHHHHHHHHHHhhCCccCCEEEEEC-chHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCc-EeeH--HHH
Confidence            3334677775432    25789999999 899999999999885 75 7888899988865 66778864 3332  222


Q ss_pred             cccCCCccEEEECCCCcccee
Q 025278          209 EDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       209 ~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .+...++|+||+|+|++....
T Consensus       237 ~~~l~~aDvVI~aT~s~~~~i  257 (423)
T PRK00045        237 PEALAEADIVISSTGAPHPII  257 (423)
T ss_pred             HHHhccCCEEEECCCCCCcEE
Confidence            333458999999999776554

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.85  E-value=9.7e-05  Score=64.58  Aligned_cols=97  Identities=21%  Similarity=0.285  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCC-ccccccCCCccEEEECCC---Cc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTK-ENIEDLPEKFDVVFDAVG---KM  225 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~-~~~~~~~~~~d~vid~~G---~~  225 (255)
                      +.+|+|+| +|.+|+.+++.++.+ |++|+++++++++++.+. .++........+ .++.+..+.+|++|+|++   ..
T Consensus       167 ~~~VlViG-aG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~  244 (370)
T TIGR00518       167 PGDVTIIG-GGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK  244 (370)
T ss_pred             CceEEEEc-CCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence            45699999 799999999999996 889999999998887765 556533222221 233344568999999984   21


Q ss_pred             cc---eeeeeeccccCCceEEEEeeccC
Q 025278          226 CI---SIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       226 ~~---~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .-   .....+.++ +++.++.++...+
T Consensus       245 ~p~lit~~~l~~mk-~g~vIvDva~d~G  271 (370)
T TIGR00518       245 APKLVSNSLVAQMK-PGAVIVDVAIDQG  271 (370)
T ss_pred             CCcCcCHHHHhcCC-CCCEEEEEecCCC
Confidence            11   122344455 6788888886543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.83  E-value=4.5e-05  Score=56.94  Aligned_cols=97  Identities=24%  Similarity=0.336  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHH-HHcCCC--EEEcCCCccccccCCCccEEEECCCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLL-RSLGAD--LAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~-~~~g~~--~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      -.+++++|+| +|++|.+++..+... |++ ++++.|+.+|.+.+ ++++..  .+++..+  ..+....+|+||+|++.
T Consensus        10 l~~~~vlviG-aGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~--~~~~~~~~DivI~aT~~   85 (135)
T PF01488_consen   10 LKGKRVLVIG-AGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFGGVNIEAIPLED--LEEALQEADIVINATPS   85 (135)
T ss_dssp             GTTSEEEEES-SSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG--HCHHHHTESEEEE-SST
T ss_pred             cCCCEEEEEC-CHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcCccccceeeHHH--HHHHHhhCCeEEEecCC
Confidence            3688999999 899999999999886 766 88889999887765 456322  2333322  22223579999999996


Q ss_pred             ccceeeeeeccccCC---ceEEEEeeccC
Q 025278          225 MCISIVYQKCDKFQE---KSLINFGLFRQ  250 (255)
Q Consensus       225 ~~~~~~~~~~~~~~~---G~~v~~G~~~~  250 (255)
                      ...... ...+....   +.++-++.+..
T Consensus        86 ~~~~i~-~~~~~~~~~~~~~v~Dla~Pr~  113 (135)
T PF01488_consen   86 GMPIIT-EEMLKKASKKLRLVIDLAVPRD  113 (135)
T ss_dssp             TSTSST-HHHHTTTCHHCSEEEES-SS-S
T ss_pred             CCcccC-HHHHHHHHhhhhceeccccCCC
Confidence            543222 11221011   46777776654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08324 short chain dehydrogenase; Validated

Probab=97.81  E-value=4.4e-05  Score=72.14  Aligned_cols=110  Identities=25%  Similarity=0.284  Sum_probs=70.3

Q ss_pred             cceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe
Q 025278          104 GSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT  183 (255)
Q Consensus       104 g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~  183 (255)
                      -++++|..++...++.+ +.++.+++.....         ......+|++++|+||+|++|...++.+... |.+|++++
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~---------~~~~~l~gk~vLVTGasggIG~~la~~L~~~-Ga~Vvl~~  453 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRM---------PKPKPLAGKVALVTGAAGGIGKATAKRLAAE-GACVVLAD  453 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhhcC---------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHC-cCEEEEEe
Confidence            35667777776666665 5555555431100         0122346899999999999999999988884 89999999


Q ss_pred             cChhhHHHHH-HcCC--C---EEEcCCCcc-ccc-------cCCCccEEEECCCC
Q 025278          184 SSTAKLDLLR-SLGA--D---LAIDYTKEN-IED-------LPEKFDVVFDAVGK  224 (255)
Q Consensus       184 ~~~~~~~~~~-~~g~--~---~v~~~~~~~-~~~-------~~~~~d~vid~~G~  224 (255)
                      ++.++.+.+. +++.  .   ...|..+.. ...       ..+++|++|+++|.
T Consensus       454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG~  508 (681)
T PRK08324        454 LDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGI  508 (681)
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            9988776553 4443  1   122333221 111       12479999999993

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.79  E-value=6.4e-05  Score=59.06  Aligned_cols=73  Identities=18%  Similarity=0.374  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcC---CCEEEcCCCcc----cccc----CCCccEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLG---ADLAIDYTKEN----IEDL----PEKFDVV  218 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g---~~~v~~~~~~~----~~~~----~~~~d~v  218 (255)
                      .|.+|||+||++++|+..++-...+ |-+||+..|++++++.++...   ...+.|..+.+    +.++    -...|++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~el-gN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl   82 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLEL-GNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL   82 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHh-CCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence            4789999999999999988888886 999999999999999997654   23344544433    1111    1257999


Q ss_pred             EECCC
Q 025278          219 FDAVG  223 (255)
Q Consensus       219 id~~G  223 (255)
                      +++.|
T Consensus        83 iNNAG   87 (245)
T COG3967          83 INNAG   87 (245)
T ss_pred             eeccc
Confidence            99988

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.74  E-value=0.00013  Score=61.54  Aligned_cols=95  Identities=17%  Similarity=0.276  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++++|+| .|.+|.+++..++.+ |++|++.++++++.+.+.+.|...+ ..  .+..+..++.|+||+++.......
T Consensus       150 ~gk~v~IiG-~G~iG~avA~~L~~~-G~~V~v~~R~~~~~~~~~~~g~~~~-~~--~~l~~~l~~aDiVint~P~~ii~~  224 (287)
T TIGR02853       150 HGSNVMVLG-FGRTGMTIARTFSAL-GARVFVGARSSADLARITEMGLIPF-PL--NKLEEKVAEIDIVINTIPALVLTA  224 (287)
T ss_pred             CCCEEEEEc-ChHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHCCCeee-cH--HHHHHHhccCCEEEECCChHHhCH
Confidence            578999999 899999999999985 8999999999888877777775432 21  223334468899999987442222


Q ss_pred             eeeeccccCCceEEEEeeccC
Q 025278          230 VYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       230 ~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ..+..++ ++..++.++...+
T Consensus       225 ~~l~~~k-~~aliIDlas~Pg  244 (287)
T TIGR02853       225 DVLSKLP-KHAVIIDLASKPG  244 (287)
T ss_pred             HHHhcCC-CCeEEEEeCcCCC
Confidence            2233344 4556666666443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.69  E-value=0.00023  Score=59.56  Aligned_cols=101  Identities=19%  Similarity=0.199  Sum_probs=67.1

Q ss_pred             hcccCCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHHHc----CCCEEEcCCCcccccc---CCCcc
Q 025278          145 RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLRSL----GADLAIDYTKENIEDL---PEKFD  216 (255)
Q Consensus       145 ~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~---~~~~d  216 (255)
                      ...+++|++||.+| +|. |..+.++++..+. .++++++.+++.++.+++.    +.+.+ +....++.+.   .+.+|
T Consensus        72 ~~~~~~g~~VLDiG-~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v-~~~~~d~~~l~~~~~~fD  148 (272)
T PRK11873         72 LAELKPGETVLDLG-SGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRLGEIEALPVADNSVD  148 (272)
T ss_pred             hccCCCCCEEEEeC-CCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCE-EEEEcchhhCCCCCCcee
Confidence            45688999999999 777 8888888877522 4699999999999888653    33221 1111111111   24799


Q ss_pred             EEEECCC------CccceeeeeeccccCCceEEEEeecc
Q 025278          217 VVFDAVG------KMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       217 ~vid~~G------~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +|+...-      .......+.+.++ ++|++++.+...
T Consensus       149 ~Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~~  186 (272)
T PRK11873        149 VIISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDVVL  186 (272)
T ss_pred             EEEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEeec
Confidence            9985432      2234455677788 899999987654

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=97.58  E-value=0.0013  Score=55.52  Aligned_cols=173  Identities=14%  Similarity=0.065  Sum_probs=101.6

Q ss_pred             EEEEEEeCCCCCCCCCCCEEEeccCcccc------------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhh-
Q 025278           69 AGVVEKVGSQVKKFKVGDEVYGDINEKAL------------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEA-  129 (255)
Q Consensus        69 ~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~------------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-  129 (255)
                      -++|++  |+++++.+|.|++++.+....                  ......-.|.+|..+..+..+.-    +.++. 
T Consensus        38 fA~Vve--S~~~~i~vGerlyGy~P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y~~----~~e~~~  111 (314)
T PF11017_consen   38 FATVVE--SRHPGIAVGERLYGYFPMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAYDP----EREDWQ  111 (314)
T ss_pred             EEEEEe--eCCCCccCccEEEeeccccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCcccCc----chhHHH
Confidence            366676  899999999999987642111                  00112234555555554433311    12222 


Q ss_pred             hccchhHHHHHHHHH---hcccCCCCEEEEEcCCchHHHHHHHHHH-HhcCCcEEEEecChhhHHHHHHcC-CCEEEcCC
Q 025278          130 ASLPLATETAYEGLE---RSAFSAGKSILVLGGAGGVGTMVIQLAK-HVFGASKVAATSSTAKLDLLRSLG-ADLAIDYT  204 (255)
Q Consensus       130 a~l~~~~~ta~~~l~---~~~~~~g~~VlI~ga~g~~G~~a~~~a~-~~~g~~vi~~~~~~~~~~~~~~~g-~~~v~~~~  204 (255)
                      +++---+.|.|..-+   ....-..+.|+|..|++..++..+..++ ..++.++|.+++. .+..+.+.+| .|.++.|+
T Consensus       112 ~LlrPLf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~-~N~~Fve~lg~Yd~V~~Yd  190 (314)
T PF11017_consen  112 MLLRPLFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSA-RNVAFVESLGCYDEVLTYD  190 (314)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEecC-cchhhhhccCCceEEeehh
Confidence            222223446664432   2234455789999999999999999888 3345667766654 4455889999 78888886


Q ss_pred             CccccccCCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          205 KENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       205 ~~~~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +-+..+ ...--+++|+.|.........+-+.-.--..+.+|...
T Consensus       191 ~i~~l~-~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th  234 (314)
T PF11017_consen  191 DIDSLD-APQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATH  234 (314)
T ss_pred             hhhhcc-CCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccC
Confidence            543221 23557888999977655544332221113456666544

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.53  E-value=0.00062  Score=51.95  Aligned_cols=96  Identities=22%  Similarity=0.257  Sum_probs=61.2

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      ..-.|++++|.| -|.+|.-.++.++.+ |++|++++.++-+.-.+..-|.+..      ...+..+..|++|.++|...
T Consensus        19 ~~l~Gk~vvV~G-YG~vG~g~A~~lr~~-Ga~V~V~e~DPi~alqA~~dGf~v~------~~~~a~~~adi~vtaTG~~~   90 (162)
T PF00670_consen   19 LMLAGKRVVVIG-YGKVGKGIARALRGL-GARVTVTEIDPIRALQAAMDGFEVM------TLEEALRDADIFVTATGNKD   90 (162)
T ss_dssp             S--TTSEEEEE---SHHHHHHHHHHHHT-T-EEEEE-SSHHHHHHHHHTT-EEE-------HHHHTTT-SEEEE-SSSSS
T ss_pred             eeeCCCEEEEeC-CCcccHHHHHHHhhC-CCEEEEEECChHHHHHhhhcCcEec------CHHHHHhhCCEEEECCCCcc
Confidence            456899999999 999999999999996 9999999999988777777776432      23344567899999999766


Q ss_pred             cee-eeeeccccCCceEEEEeeccCC
Q 025278          227 ISI-VYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       227 ~~~-~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      ... .-++.++ .+-.+..+|.+..+
T Consensus        91 vi~~e~~~~mk-dgail~n~Gh~d~E  115 (162)
T PF00670_consen   91 VITGEHFRQMK-DGAILANAGHFDVE  115 (162)
T ss_dssp             SB-HHHHHHS--TTEEEEESSSSTTS
T ss_pred             ccCHHHHHHhc-CCeEEeccCcCcee
Confidence            422 2244443 33445555655443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.50  E-value=0.00042  Score=63.32  Aligned_cols=81  Identities=20%  Similarity=0.209  Sum_probs=56.8

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-c--------CC-----CEE--EcCCCc-
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-L--------GA-----DLA--IDYTKE-  206 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~--------g~-----~~v--~~~~~~-  206 (255)
                      ...+.+.|++++|+||+|.+|..+++.+.. .|.+|++++++.++.+.+.+ +        |.     ..+  .|..+. 
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk-~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e  151 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLK-LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD  151 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence            356678899999999999999999888877 49999999999888754421 1        21     112  232221 


Q ss_pred             cccccCCCccEEEECCCCc
Q 025278          207 NIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       207 ~~~~~~~~~d~vid~~G~~  225 (255)
                      .+.+..+++|+||.+.|..
T Consensus       152 sI~~aLggiDiVVn~AG~~  170 (576)
T PLN03209        152 QIGPALGNASVVICCIGAS  170 (576)
T ss_pred             HHHHHhcCCCEEEEccccc
Confidence            2223346899999999854

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=97.47  E-value=6.8e-05  Score=55.04  Aligned_cols=50  Identities=32%  Similarity=0.413  Sum_probs=35.3

Q ss_pred             cCCCEEEcCCCccccccCCCccEEEECCC--CccceeeeeeccccCCceEEEEee
Q 025278          195 LGADLAIDYTKENIEDLPEKFDVVFDAVG--KMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       195 ~g~~~v~~~~~~~~~~~~~~~d~vid~~G--~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      |||++++||++.++ ...+++|+|||++|  .......+.+++  ++|+++.+|.
T Consensus         1 LGAd~vidy~~~~~-~~~~~~D~ViD~~g~~~~~~~~~~~~~l--~~G~~v~i~~   52 (127)
T PF13602_consen    1 LGADEVIDYRDTDF-AGPGGVDVVIDTVGQTGESLLDASRKLL--PGGRVVSIGG   52 (127)
T ss_dssp             CT-SEEEETTCSHH-HTTS-EEEEEESS-CCHHHCGGGCCCTE--EEEEEEEE-S
T ss_pred             CCcCEEecCCCccc-cCCCCceEEEECCCCccHHHHHHHHHHC--CCCEEEEECC
Confidence            69999999997777 43579999999999  555445555666  6799999873

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.47  E-value=0.00065  Score=60.41  Aligned_cols=153  Identities=19%  Similarity=0.244  Sum_probs=98.0

Q ss_pred             ccccceEEEEEEeCCCCCCCCCCCEEEec--------cCccccCCCCCCcceeeEEeeeCCceEe---C-CCCCCHHhhh
Q 025278           63 IPGYDVAGVVEKVGSQVKKFKVGDEVYGD--------INEKALDHPKRNGSLAEYTAVEENLLAL---K-PKNLSFVEAA  130 (255)
Q Consensus        63 ~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~---l-p~~~~~~~aa  130 (255)
                      .-|.|+++.+.+++++.++.-+|+.-++-        +......+...++.|++++.++. .+..   | +..++...+|
T Consensus        89 ~~~~~a~~hl~~Va~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~A  167 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RVRTETDISAGAVSISSAA  167 (417)
T ss_pred             cCchHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhcCCCCCCcCHHHHH
Confidence            46889999999999988775555554310        11222234445678999888776 3332   3 2223321111


Q ss_pred             ccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHH-HHHHcCCCEEEcCCCccc
Q 025278          131 SLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLD-LLRSLGADLAIDYTKENI  208 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~-~~~~~g~~~v~~~~~~~~  208 (255)
                              .-.+.+.....++++|+|+| +|.+|.++++.++.. | .+++++.++.++.+ +++++|.. .++.  .+.
T Consensus       168 --------v~la~~~~~~l~~~~VlViG-aG~iG~~~a~~L~~~-G~~~V~v~~rs~~ra~~la~~~g~~-~i~~--~~l  234 (417)
T TIGR01035       168 --------VELAERIFGSLKGKKALLIG-AGEMGELVAKHLLRK-GVGKILIANRTYERAEDLAKELGGE-AVKF--EDL  234 (417)
T ss_pred             --------HHHHHHHhCCccCCEEEEEC-ChHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHcCCe-EeeH--HHH
Confidence                    11122333446789999999 799999999999885 6 77888899988755 66778764 3322  133


Q ss_pred             cccCCCccEEEECCCCcccee
Q 025278          209 EDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       209 ~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .+...++|+||+|+|.+....
T Consensus       235 ~~~l~~aDvVi~aT~s~~~ii  255 (417)
T TIGR01035       235 EEYLAEADIVISSTGAPHPIV  255 (417)
T ss_pred             HHHHhhCCEEEECCCCCCceE
Confidence            334468999999999776543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.44  E-value=0.0011  Score=53.99  Aligned_cols=74  Identities=22%  Similarity=0.315  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHc---CCCEEEcC--CCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSL---GADLAIDY--TKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~---g~~~v~~~--~~~~-~~~-------~~~~~  215 (255)
                      .+++|+|+|++|++|..+++.+... |.+|+.+++++++.+.+ +++   +..+.+..  .+.+ ..+       ..+++
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   82 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKE-GAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI   82 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999884 99999999998877655 232   22222322  2111 111       12367


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |.++.+.|.
T Consensus        83 d~ii~~ag~   91 (238)
T PRK05786         83 DGLVVTVGG   91 (238)
T ss_pred             CEEEEcCCC
Confidence            999999884

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.00091  Score=56.02  Aligned_cols=73  Identities=21%  Similarity=0.356  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCcc-cc----c----cCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKEN-IE----D----LPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~-~~----~----~~~~~d~vi  219 (255)
                      .+++++|+||+|++|...++.+.. .|.+|+++++++++++.+.+.+.+.+ .|..+.. ..    .    ..+.+|++|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~-~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQS-DGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            467899999999999999888877 49999999999988887776665433 3433321 11    1    124689999


Q ss_pred             ECCC
Q 025278          220 DAVG  223 (255)
Q Consensus       220 d~~G  223 (255)
                      ++.|
T Consensus        82 ~~Ag   85 (277)
T PRK05993         82 NNGA   85 (277)
T ss_pred             ECCC
Confidence            9987

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.0024  Score=50.74  Aligned_cols=100  Identities=17%  Similarity=0.144  Sum_probs=71.3

Q ss_pred             HHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH----HHHHHcCCCEE-EcCCCccc-cccCCC
Q 025278          141 EGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL----DLLRSLGADLA-IDYTKENI-EDLPEK  214 (255)
Q Consensus       141 ~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~----~~~~~~g~~~v-~~~~~~~~-~~~~~~  214 (255)
                      ..++...+++|++||=+| + +.|..++-+|+.. + +|+.+++.++=.    +.++++|...+ +...+... -.....
T Consensus        63 ~m~~~L~~~~g~~VLEIG-t-GsGY~aAvla~l~-~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP  138 (209)
T COG2518          63 RMLQLLELKPGDRVLEIG-T-GSGYQAAVLARLV-G-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP  138 (209)
T ss_pred             HHHHHhCCCCCCeEEEEC-C-CchHHHHHHHHHh-C-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence            345678899999999999 4 5699999999974 4 899999887733    33566886433 22222211 111246


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      +|.|+=+.+.+.....++..++ ++|+++.-
T Consensus       139 yD~I~Vtaaa~~vP~~Ll~QL~-~gGrlv~P  168 (209)
T COG2518         139 YDRIIVTAAAPEVPEALLDQLK-PGGRLVIP  168 (209)
T ss_pred             cCEEEEeeccCCCCHHHHHhcc-cCCEEEEE
Confidence            9999999998888888888888 88987754

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.001  Score=55.51  Aligned_cols=72  Identities=18%  Similarity=0.300  Sum_probs=52.6

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCcc-ccc-------cCCCccEEEECC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKEN-IED-------LPEKFDVVFDAV  222 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~-~~~-------~~~~~d~vid~~  222 (255)
                      ++++|+||+|++|...++.+.. .|.+|+++++++++.+.+.+.+...+ .|..+.. ..+       ..+++|++|++.
T Consensus         2 k~vlItGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKA-AGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            4799999999999999988887 49999999999888777666564433 3433321 111       124789999999


Q ss_pred             CC
Q 025278          223 GK  224 (255)
Q Consensus       223 G~  224 (255)
                      |.
T Consensus        81 g~   82 (274)
T PRK05693         81 GY   82 (274)
T ss_pred             CC
Confidence            83

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.28  E-value=0.0015  Score=55.25  Aligned_cols=98  Identities=16%  Similarity=0.081  Sum_probs=61.6

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc----CCC-EEEcCCCccccccCCCccEEEECC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL----GAD-LAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      ..++++|+-.| +|. |.+++.+++. +..++++++.++...+.+++.    +.. .+............+.+|+|+...
T Consensus       157 ~~~g~~VLDvG-cGs-G~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~  233 (288)
T TIGR00406       157 DLKDKNVIDVG-CGS-GILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANI  233 (288)
T ss_pred             cCCCCEEEEeC-CCh-hHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEec
Confidence            45789999999 776 8888777764 456899999999888777542    221 111111101111234799999765


Q ss_pred             CCc---cceeeeeeccccCCceEEEEeecc
Q 025278          223 GKM---CISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       223 G~~---~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      -..   .....+.+.++ ++|++++.|...
T Consensus       234 ~~~~l~~ll~~~~~~Lk-pgG~li~sgi~~  262 (288)
T TIGR00406       234 LAEVIKELYPQFSRLVK-PGGWLILSGILE  262 (288)
T ss_pred             CHHHHHHHHHHHHHHcC-CCcEEEEEeCcH
Confidence            432   22223356666 899999988754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0014  Score=56.51  Aligned_cols=74  Identities=26%  Similarity=0.453  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE---EcCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA---IDYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v---~~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++++.+    ++.|.+..   .|..+.+ ..+       ..++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~-~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFAR-RGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            568999999999999999988887 499999999998887644    34554432   2332221 111       1257


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        85 iD~lVnnAG~   94 (330)
T PRK06139         85 IDVWVNNVGV   94 (330)
T ss_pred             CCEEEECCCc
Confidence            8999999983

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.27  E-value=0.0031  Score=47.84  Aligned_cols=84  Identities=24%  Similarity=0.304  Sum_probs=54.6

Q ss_pred             HHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEEcCCCccccccCCCccEE
Q 025278          141 EGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       141 ~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~d~v  218 (255)
                      .+++...+ ..+++++|+| +|.+|...++.++..++.++++++++.++.+.+ ++++... +.....+..+..+++|+|
T Consensus         8 ~a~~~~~~~~~~~~i~iiG-~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dvv   85 (155)
T cd01065           8 RALEEAGIELKGKKVLILG-AGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-IAIAYLDLEELLAEADLI   85 (155)
T ss_pred             HHHHhhCCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-cceeecchhhccccCCEE
Confidence            34444333 4578999999 699999988888774236788889988776654 5555421 001111223335689999


Q ss_pred             EECCCCcc
Q 025278          219 FDAVGKMC  226 (255)
Q Consensus       219 id~~G~~~  226 (255)
                      |.|++...
T Consensus        86 i~~~~~~~   93 (155)
T cd01065          86 INTTPVGM   93 (155)
T ss_pred             EeCcCCCC
Confidence            99998654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.0017  Score=52.94  Aligned_cols=74  Identities=31%  Similarity=0.457  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEE-EcCCCcc-ccc---cCCCccEEEECCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLA-IDYTKEN-IED---LPEKFDVVFDAVG  223 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v-~~~~~~~-~~~---~~~~~d~vid~~G  223 (255)
                      .+++++|+|++|++|...++.+.. .|.+|+++++++++.+.+. +.+...+ .|..+.. ...   ..+++|++|++.|
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag   86 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQ-RGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAG   86 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCC
Confidence            568999999999999999999888 4899999999887776553 4444322 2333221 111   1246899999998


Q ss_pred             C
Q 025278          224 K  224 (255)
Q Consensus       224 ~  224 (255)
                      .
T Consensus        87 ~   87 (245)
T PRK07060         87 I   87 (245)
T ss_pred             C
Confidence            4

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0013  Score=55.67  Aligned_cols=74  Identities=28%  Similarity=0.365  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCC--CEE---EcCCCcc-cc-------ccCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGA--DLA---IDYTKEN-IE-------DLPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~--~~v---~~~~~~~-~~-------~~~~~~  215 (255)
                      .|++++|+|++|++|..+++.+.. .|++|+++++++++++.+ ++++.  ...   .|..+.. ..       +..+.+
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   86 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHA-RGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI   86 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999998887 499999999998877654 45542  111   2332221 11       112478


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|++.|.
T Consensus        87 d~vI~nAG~   95 (296)
T PRK05872         87 DVVVANAGI   95 (296)
T ss_pred             CEEEECCCc
Confidence            999999994

>PRK06182 short chain dehydrogenase; Validated

Probab=97.21  E-value=0.002  Score=53.73  Aligned_cols=74  Identities=27%  Similarity=0.368  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCcc-ccc-------cCCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKEN-IED-------LPEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~-~~~-------~~~~~d~vid  220 (255)
                      .+++++|+|++|++|...++.+.. .|.+|+++++++++++.+.+.+...+ .|..+.. ...       ...++|++|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~-~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAA-QGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            467999999999999999988877 49999999999888776655554332 3333322 111       1247999999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      +.|.
T Consensus        81 ~ag~   84 (273)
T PRK06182         81 NAGY   84 (273)
T ss_pred             CCCc
Confidence            9984

>PRK04148 hypothetical protein; Provisional

Probab=97.20  E-value=0.0018  Score=47.85  Aligned_cols=51  Identities=22%  Similarity=0.286  Sum_probs=39.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~  202 (255)
                      ..+.++++.| +| .|...+..+..+ |.+|+++|.+++..+.+++.+.+.+.+
T Consensus        15 ~~~~kileIG-~G-fG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~~~~~v~d   65 (134)
T PRK04148         15 GKNKKIVELG-IG-FYFKVAKKLKES-GFDVIVIDINEKAVEKAKKLGLNAFVD   65 (134)
T ss_pred             ccCCEEEEEE-ec-CCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhCCeEEEC
Confidence            4568899999 88 887545455554 999999999999999998888665543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.17  E-value=0.0018  Score=50.52  Aligned_cols=92  Identities=22%  Similarity=0.191  Sum_probs=61.7

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc---ccccCCCccEEEECCCCccc---
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN---IEDLPEKFDVVFDAVGKMCI---  227 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~~d~vid~~G~~~~---  227 (255)
                      |+|+||+|.+|...++.+... +.+|+++.|++++.+.  ..+.+. +..+-.+   +.+..+++|+||.+.|....   
T Consensus         1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~~~~~--~~~~~~-~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~   76 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPSKAED--SPGVEI-IQGDLFDPDSVKAALKGADAVIHAAGPPPKDVD   76 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGGGHHH--CTTEEE-EESCTTCHHHHHHHHTTSSEEEECCHSTTTHHH
T ss_pred             eEEECCCChHHHHHHHHHHHC-CCEEEEEecCchhccc--cccccc-ceeeehhhhhhhhhhhhcchhhhhhhhhccccc
Confidence            789999999999999999984 8999999999998877  444443 3332222   23335699999999984332   


Q ss_pred             -eeeeeeccccC-CceEEEEeecc
Q 025278          228 -SIVYQKCDKFQ-EKSLINFGLFR  249 (255)
Q Consensus       228 -~~~~~~~~~~~-~G~~v~~G~~~  249 (255)
                       .....+.++.. -.+++.++..+
T Consensus        77 ~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   77 AAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             ccccccccccccccccceeeeccc
Confidence             11222222211 24778777665

...

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.16  E-value=0.0027  Score=50.28  Aligned_cols=76  Identities=28%  Similarity=0.331  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc----CCCEE-EcCCC-ccccccCCCccEEEECC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL----GADLA-IDYTK-ENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~----g~~~v-~~~~~-~~~~~~~~~~d~vid~~  222 (255)
                      .+.+++|+|++|++|..++..+.. .+.+++++.++.++.+.+. ++    +.... .+..+ ++..+...++|+||.++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~-~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at  105 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAR-EGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG  105 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence            568999999889999988887776 4889999999888776553 22    32211 12211 22223345789999987


Q ss_pred             CCcc
Q 025278          223 GKMC  226 (255)
Q Consensus       223 G~~~  226 (255)
                      ....
T Consensus       106 ~~g~  109 (194)
T cd01078         106 AAGV  109 (194)
T ss_pred             CCCc
Confidence            7444

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.0024  Score=52.68  Aligned_cols=74  Identities=22%  Similarity=0.353  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-EEcCCCcc-ccc-------cCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-AIDYTKEN-IED-------LPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v~~~~~~~-~~~-------~~~~~d~vi  219 (255)
                      .|++|+|+||+|++|...++.+.. .|++++++++++++.+.. ++++... ..|..+.. ...       ..+++|++|
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   84 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAA-EGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAF   84 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            578999999999999999988887 499999999988776554 3454322 22333221 111       124689999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .++|.
T Consensus        85 ~~ag~   89 (255)
T PRK06057         85 NNAGI   89 (255)
T ss_pred             ECCCc
Confidence            99984

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0027  Score=52.85  Aligned_cols=74  Identities=24%  Similarity=0.326  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE--EcCCCcc-c-------cccCCCccEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA--IDYTKEN-I-------EDLPEKFDVV  218 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v--~~~~~~~-~-------~~~~~~~d~v  218 (255)
                      .+++++|+||+|++|...++.+.. .|++++++++++++++.+ ++++...+  .|..+.+ +       .+...++|++
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   82 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAA-LGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVL   82 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            367999999999999998887777 499999999998887654 34441222  2332221 1       1112478999


Q ss_pred             EECCCC
Q 025278          219 FDAVGK  224 (255)
Q Consensus       219 id~~G~  224 (255)
                      |++.|.
T Consensus        83 i~~ag~   88 (273)
T PRK07825         83 VNNAGV   88 (273)
T ss_pred             EECCCc
Confidence            999984

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.12  E-value=0.0023  Score=45.63  Aligned_cols=92  Identities=26%  Similarity=0.296  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-c---C--CCE-EEcCCCccccccCCCccEEEECC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-L---G--ADL-AIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~---g--~~~-v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      |+.+||-+| +| .|.++..+++...+.++++++.+++-++.+++ .   +  ... ++..+-....+..+.+|+|+...
T Consensus         1 p~~~vLDlG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLG-CG-TGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEET-TT-TSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CCCEEEEEc-Cc-CCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            678999998 44 48888889985469999999999998888753 2   2  222 22222201122345799999876


Q ss_pred             -CCccc---------eeeeeeccccCCceEEE
Q 025278          223 -GKMCI---------SIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       223 -G~~~~---------~~~~~~~~~~~~G~~v~  244 (255)
                       .....         ...+.+.++ ++|+++.
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi  109 (112)
T PF12847_consen   79 FTLHFLLPLDERRRVLERIRRLLK-PGGRLVI  109 (112)
T ss_dssp             GSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             CccccccchhHHHHHHHHHHHhcC-CCcEEEE
Confidence             22211         233455666 7888775

...

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.10  E-value=0.0032  Score=52.18  Aligned_cols=74  Identities=27%  Similarity=0.381  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCC-EEE--cCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGAD-LAI--DYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~-~v~--~~~~~~-~~~-------~~~~~d~  217 (255)
                      .+++++|+|+++++|...++.+.. .|++|+++++++++.+.+. +++.. ..+  |..+.. ...       ..+.+|+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   83 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLA-EGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC   83 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            578999999999999998888887 4999999999988776654 34421 222  222211 111       1246899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        84 li~~ag~   90 (263)
T PRK06200         84 FVGNAGI   90 (263)
T ss_pred             EEECCCC
Confidence            9999983

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.10  E-value=0.0038  Score=53.50  Aligned_cols=99  Identities=19%  Similarity=0.199  Sum_probs=66.3

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEecChhhHHHHH----HcCCCEE--EcCCCccccccCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFG--ASKVAATSSTAKLDLLR----SLGADLA--IDYTKENIEDLPE  213 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g--~~vi~~~~~~~~~~~~~----~~g~~~v--~~~~~~~~~~~~~  213 (255)
                      .++...++++++||.+| +| .|..++.+++.. +  .+|++++.+++..+.++    +.|.+.+  +..+........+
T Consensus        72 ll~~L~i~~g~~VLDIG-~G-tG~~a~~LA~~~-~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~  148 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIG-GG-TGYNAAVMSRVV-GEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA  148 (322)
T ss_pred             HHHhcCCCCCCEEEEEe-CC-ccHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence            33556788999999999 65 599999999875 4  36899999998776654    3565433  2221111111124


Q ss_pred             CccEEEECCCCccceeeeeeccccCCceEEE
Q 025278          214 KFDVVFDAVGKMCISIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       214 ~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~  244 (255)
                      .+|+|+.+.|.......+.+.++ ++|+++.
T Consensus       149 ~fD~Ii~~~g~~~ip~~~~~~Lk-pgG~Lvv  178 (322)
T PRK13943        149 PYDVIFVTVGVDEVPETWFTQLK-EGGRVIV  178 (322)
T ss_pred             CccEEEECCchHHhHHHHHHhcC-CCCEEEE
Confidence            69999998886555555566666 7898776

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.09  E-value=0.0025  Score=59.93  Aligned_cols=75  Identities=20%  Similarity=0.387  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh---------------------hHHHHHHcCCCEEEcCCC---
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA---------------------KLDLLRSLGADLAIDYTK---  205 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~---------------------~~~~~~~~g~~~v~~~~~---  205 (255)
                      .+++|+|+| +|+.|+.+++.++.. |.+|+++++.+.                     +.+.++++|.+..++..-   
T Consensus       309 ~~kkVaIIG-~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  386 (639)
T PRK12809        309 RSEKVAVIG-AGPAGLGCADILARA-GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD  386 (639)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHc-CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc
Confidence            489999999 899999999999985 999999987652                     456678889887766532   


Q ss_pred             ccccccCCCccEEEECCCCcc
Q 025278          206 ENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       206 ~~~~~~~~~~d~vid~~G~~~  226 (255)
                      ..+.+...++|.||.++|...
T Consensus       387 ~~~~~l~~~~DaV~latGa~~  407 (639)
T PRK12809        387 ITFSDLTSEYDAVFIGVGTYG  407 (639)
T ss_pred             CCHHHHHhcCCEEEEeCCCCC
Confidence            123333457999999999653

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0035  Score=53.02  Aligned_cols=74  Identities=26%  Similarity=0.468  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCC-EEE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGAD-LAI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~-~v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+||+|++|...++.+.. .|.+|++++++.++++.+.    +.+.+ ..+  |..+.. ..+       ..+.
T Consensus        39 ~~k~vlItGasggIG~~la~~La~-~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  117 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFAR-RGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGG  117 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999998888877 4999999999988765542    22322 122  222211 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus       118 id~li~~AG~  127 (293)
T PRK05866        118 VDILINNAGR  127 (293)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.09  E-value=0.0011  Score=51.32  Aligned_cols=95  Identities=19%  Similarity=0.170  Sum_probs=62.3

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC--CEEEcCCCccccccCCCccEEEECCCCcccee-
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA--DLAIDYTKENIEDLPEKFDVVFDAVGKMCISI-  229 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~-  229 (255)
                      .|.|+||+|-+|...++-|.. +|..|++++|++.|....+...+  ..+++...  ..+...|+|+||++.|...... 
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~-RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~--~a~~l~g~DaVIsA~~~~~~~~~   78 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALK-RGHEVTAIVRNASKLAARQGVTILQKDIFDLTS--LASDLAGHDAVISAFGAGASDND   78 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHh-CCCeeEEEEeChHhccccccceeecccccChhh--hHhhhcCCceEEEeccCCCCChh
Confidence            588999999999999999998 69999999999998865422110  01232211  1234569999999988552111 


Q ss_pred             e--------eeecccc-CCceEEEEeeccC
Q 025278          230 V--------YQKCDKF-QEKSLINFGLFRQ  250 (255)
Q Consensus       230 ~--------~~~~~~~-~~G~~v~~G~~~~  250 (255)
                      .        .+..++- ..-|+..+|..+.
T Consensus        79 ~~~~k~~~~li~~l~~agv~RllVVGGAGS  108 (211)
T COG2910          79 ELHSKSIEALIEALKGAGVPRLLVVGGAGS  108 (211)
T ss_pred             HHHHHHHHHHHHHHhhcCCeeEEEEcCccc
Confidence            1        2222221 2358888887664

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0032  Score=51.87  Aligned_cols=75  Identities=28%  Similarity=0.417  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCC-CEEE--cCCCc-cccc-------cCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGA-DLAI--DYTKE-NIED-------LPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~-~~v~--~~~~~-~~~~-------~~~  213 (255)
                      ..+++++|+|++|++|..++..+... |++|+++.+++++++.+.+    .+. ..++  |..+. +..+       ..+
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQA-GAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG   85 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            45789999999999999998888874 9999999999887655432    121 1222  22211 1111       123


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|++.|.
T Consensus        86 ~~d~li~~ag~   96 (258)
T PRK06949         86 TIDILVNNSGV   96 (258)
T ss_pred             CCCEEEECCCC
Confidence            68999999984

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.07  E-value=0.0055  Score=51.12  Aligned_cols=104  Identities=22%  Similarity=0.318  Sum_probs=70.5

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCEEEcCCCccccccCCCccEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADLAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~d~v  218 (255)
                      ++..++++|++||=+| +|- |.+++.+|+. ++++|+.++.|++..+.++    +.|...-+...-.++.+..+.+|-|
T Consensus        65 ~~kl~L~~G~~lLDiG-CGW-G~l~~~aA~~-y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrI  141 (283)
T COG2230          65 LEKLGLKPGMTLLDIG-CGW-GGLAIYAAEE-YGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRI  141 (283)
T ss_pred             HHhcCCCCCCEEEEeC-CCh-hHHHHHHHHH-cCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccccee
Confidence            3789999999999999 665 8888899998 5999999999999877764    4564411111112333333458877


Q ss_pred             E-----ECCCC---ccceeeeeeccccCCceEEEEeeccC
Q 025278          219 F-----DAVGK---MCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       219 i-----d~~G~---~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +     |.+|.   +.-...+.+.++ ++|++.+......
T Consensus       142 vSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~~  180 (283)
T COG2230         142 VSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITGP  180 (283)
T ss_pred             eehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecCC
Confidence            6     34554   223334466666 8999988776554

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0029  Score=52.15  Aligned_cols=73  Identities=21%  Similarity=0.270  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-hhHHHHHHcCCCEE--EcCCCc-cccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLDLLRSLGADLA--IDYTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-~~~~~~~~~g~~~v--~~~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      .+++++|+||+|++|...++.+.. .|.+|+++++++ ++.+.... +....  .|..+. ...+..+.+|++|+++|.
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~-~G~~Vi~~~r~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~   89 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRA-KGAKVIGLTHSKINNSESNDE-SPNEWIKWECGKEESLDKQLASLDVLILNHGI   89 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHH-CCCEEEEEECCchhhhhhhcc-CCCeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence            368999999999999998887777 499999998876 33222111 11122  232222 122234579999999984

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.0038  Score=51.74  Aligned_cols=74  Identities=20%  Similarity=0.322  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H---cCCC-EE--EcCCCcccc-c-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S---LGAD-LA--IDYTKENIE-D-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~---~g~~-~v--~~~~~~~~~-~-------~~~~  214 (255)
                      ++++++|+|++|++|...++.+.. .|++|+++++++++.+.+. +   .+.. .+  .|..+.... +       ..++
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~-~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAE-AGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR   87 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999998887 4999999999887765442 2   2322 22  233322211 0       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        88 id~vi~~Ag~   97 (263)
T PRK07814         88 LDIVVNNVGG   97 (263)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.04  E-value=0.0035  Score=52.36  Aligned_cols=73  Identities=26%  Similarity=0.425  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-E----EcCCCccc-c-------ccC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-A----IDYTKENI-E-------DLP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v----~~~~~~~~-~-------~~~  212 (255)
                      .++.|+|+||++++|..++.-.... |++++.+.+..++++.+    ++.+... +    .|-.+.+. .       ...
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~-G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKR-GAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhC-CCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            5789999999999998755555443 99999998888877766    3444322 1    12222211 1       124


Q ss_pred             CCccEEEECCC
Q 025278          213 EKFDVVFDAVG  223 (255)
Q Consensus       213 ~~~d~vid~~G  223 (255)
                      +++|+.++..|
T Consensus        90 g~vDvLVNNAG  100 (282)
T KOG1205|consen   90 GRVDVLVNNAG  100 (282)
T ss_pred             CCCCEEEecCc
Confidence            58999999998

>PRK06196 oxidoreductase; Provisional

Probab=97.02  E-value=0.0038  Score=53.32  Aligned_cols=74  Identities=18%  Similarity=0.320  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEE--cCCCcc-cc-------ccCCCccEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAI--DYTKEN-IE-------DLPEKFDVV  218 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~--~~~~~~-~~-------~~~~~~d~v  218 (255)
                      .+++++|+||+|++|..++..+.. .|.+|+++++++++.+.+ +++..-..+  |..+.. ..       +..+++|++
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~-~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l  103 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQ-AGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDIL  103 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            468999999999999998887777 499999999988776554 233211222  222211 11       112479999


Q ss_pred             EECCCC
Q 025278          219 FDAVGK  224 (255)
Q Consensus       219 id~~G~  224 (255)
                      |+++|.
T Consensus       104 i~nAg~  109 (315)
T PRK06196        104 INNAGV  109 (315)
T ss_pred             EECCCC
Confidence            999984

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.00  E-value=0.0015  Score=51.11  Aligned_cols=67  Identities=19%  Similarity=0.291  Sum_probs=47.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      -.|++|.|+| .|.+|...++.++.+ |.+|++.+++..........+...  .    ++.+.....|+|+.+..
T Consensus        34 l~g~tvgIiG-~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~~~~~~--~----~l~ell~~aDiv~~~~p  100 (178)
T PF02826_consen   34 LRGKTVGIIG-YGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGADEFGVEY--V----SLDELLAQADIVSLHLP  100 (178)
T ss_dssp             STTSEEEEES-TSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHHTTEEE--S----SHHHHHHH-SEEEE-SS
T ss_pred             cCCCEEEEEE-EcCCcCeEeeeeecC-CceeEEecccCChhhhccccccee--e----ehhhhcchhhhhhhhhc
Confidence            4689999999 999999999999995 999999999887666444554311  1    22333345677777766

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.00  E-value=0.0034  Score=52.79  Aligned_cols=73  Identities=26%  Similarity=0.389  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHH-HcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLR-SLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      ..+++++|+| +|++|.+++..++.. | .+++++.|+.++.+.+. +++....+.. ..+..+....+|+||+|+..
T Consensus       121 ~~~k~vlVlG-aGg~a~ai~~aL~~~-g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivInaTp~  195 (278)
T PRK00258        121 LKGKRILILG-AGGAARAVILPLLDL-GVAEITIVNRTVERAEELAKLFGALGKAEL-DLELQEELADFDLIINATSA  195 (278)
T ss_pred             CCCCEEEEEc-CcHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhhhccceee-cccchhccccCCEEEECCcC
Confidence            4567899999 799999999988875 6 78999999988876653 4442110111 11122334579999999873

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=96.99  E-value=0.0031  Score=55.42  Aligned_cols=105  Identities=23%  Similarity=0.364  Sum_probs=68.3

Q ss_pred             HHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCcc
Q 025278          138 TAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       138 ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d  216 (255)
                      ..+..+ +...+++|++||-+| + +.|.++..+++. .+++|++++.+++.++.+++.....-++....++.+..+.+|
T Consensus       154 ~k~~~l~~~l~l~~g~rVLDIG-c-G~G~~a~~la~~-~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD  230 (383)
T PRK11705        154 AKLDLICRKLQLKPGMRVLDIG-C-GWGGLARYAAEH-YGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFD  230 (383)
T ss_pred             HHHHHHHHHhCCCCCCEEEEeC-C-CccHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCC
Confidence            344444 567889999999999 5 468888888887 489999999999999988764321111111122223335689


Q ss_pred             EEEEC-----CCC---ccceeeeeeccccCCceEEEEe
Q 025278          217 VVFDA-----VGK---MCISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       217 ~vid~-----~G~---~~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      .|+..     +|.   ......+.+.++ ++|++++..
T Consensus       231 ~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk-pGG~lvl~~  267 (383)
T PRK11705        231 RIVSVGMFEHVGPKNYRTYFEVVRRCLK-PDGLFLLHT  267 (383)
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcC-CCcEEEEEE
Confidence            88742     332   123344466677 889988754

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.0045  Score=51.22  Aligned_cols=76  Identities=29%  Similarity=0.426  Sum_probs=51.2

Q ss_pred             cCCCCEEEEEcCCc-hHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-----cCCCEE--E--cCCCcc-ccc------
Q 025278          148 FSAGKSILVLGGAG-GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-----LGADLA--I--DYTKEN-IED------  210 (255)
Q Consensus       148 ~~~g~~VlI~ga~g-~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-----~g~~~v--~--~~~~~~-~~~------  210 (255)
                      +..+++++|+|++| ++|.+.++.+... |++|+++++++++++...+     ++...+  +  |..+.+ ...      
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   92 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEE-GARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV   92 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            34578999999886 8999999988874 9999999988877654421     443222  2  322221 111      


Q ss_pred             -cCCCccEEEECCCC
Q 025278          211 -LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 -~~~~~d~vid~~G~  224 (255)
                       ..+.+|++|++.|.
T Consensus        93 ~~~g~id~li~~ag~  107 (262)
T PRK07831         93 ERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHcCCCCEEEECCCC
Confidence             12468999999984

>PRK12742 oxidoreductase; Provisional

Probab=96.98  E-value=0.0047  Score=50.15  Aligned_cols=74  Identities=26%  Similarity=0.403  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH-HHcCCCEE-EcCCCcc-ccc---cCCCccEEEECC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL-RSLGADLA-IDYTKEN-IED---LPEKFDVVFDAV  222 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~-~~~g~~~v-~~~~~~~-~~~---~~~~~d~vid~~  222 (255)
                      .+++++|+|++|++|...++.+.. .|++++.+.+ ++++.+.+ ++++...+ .|..+.. +.+   ..+.+|++|+++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~-~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~a   83 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVT-DGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNA   83 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECC
Confidence            478999999999999999988877 4888887754 45555443 45565432 2322211 111   124689999999


Q ss_pred             CC
Q 025278          223 GK  224 (255)
Q Consensus       223 G~  224 (255)
                      |.
T Consensus        84 g~   85 (237)
T PRK12742         84 GI   85 (237)
T ss_pred             CC
Confidence            84

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.98  E-value=0.0059  Score=47.57  Aligned_cols=98  Identities=18%  Similarity=0.167  Sum_probs=63.2

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE--EEcCCCccccccCCCccE
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL--AIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~--v~~~~~~~~~~~~~~~d~  217 (255)
                      ....+++|+.++=+| +| .|..++++++.-...+++++++++++.+..    ++||.+.  ++..+.+..-.....+|.
T Consensus        28 s~L~~~~g~~l~DIG-aG-tGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da  105 (187)
T COG2242          28 SKLRPRPGDRLWDIG-AG-TGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA  105 (187)
T ss_pred             HhhCCCCCCEEEEeC-CC-ccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence            467889999888888 43 377777888665678999999999988776    4588663  344443332221226899


Q ss_pred             EEECCCC--ccceeeeeeccccCCceEEE
Q 025278          218 VFDAVGK--MCISIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       218 vid~~G~--~~~~~~~~~~~~~~~G~~v~  244 (255)
                      +|=.-|.  +.....+...++ ++|++|.
T Consensus       106 iFIGGg~~i~~ile~~~~~l~-~ggrlV~  133 (187)
T COG2242         106 IFIGGGGNIEEILEAAWERLK-PGGRLVA  133 (187)
T ss_pred             EEECCCCCHHHHHHHHHHHcC-cCCeEEE
Confidence            8843331  122233455556 7888775

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.98  E-value=0.0043  Score=51.37  Aligned_cols=74  Identities=26%  Similarity=0.377  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCC-EEE--cCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGAD-LAI--DYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~-~v~--~~~~~~-~~~-------~~~~~d~  217 (255)
                      .+++++|+||+|++|...++.+.. .|.+|++++++.++.+.+++ .+.+ ..+  |..+.. ..+       ..+.+|+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   82 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVA-EGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDC   82 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            478999999999999998888777 49999999998877766654 3322 112  322211 111       1246899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|++.|.
T Consensus        83 li~~Ag~   89 (262)
T TIGR03325        83 LIPNAGI   89 (262)
T ss_pred             EEECCCC
Confidence            9999883

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.97  E-value=0.0044  Score=51.79  Aligned_cols=74  Identities=26%  Similarity=0.287  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCc--hHHHHHHHHHHHhcCCcEEEEecChhhHH---HH-HHcCCCEEE--cCCCcc-cc-------ccCC
Q 025278          150 AGKSILVLGGAG--GVGTMVIQLAKHVFGASKVAATSSTAKLD---LL-RSLGADLAI--DYTKEN-IE-------DLPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g--~~G~~a~~~a~~~~g~~vi~~~~~~~~~~---~~-~~~g~~~v~--~~~~~~-~~-------~~~~  213 (255)
                      .++++||+|+++  ++|.+.++.+.. .|++|++..++++..+   .+ +++|....+  |-.+.. ..       +..+
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~-~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAA-QGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG   84 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHh-CCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            578999999876  999998888777 4999999887653322   22 344543333  222211 11       1124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|+++|.
T Consensus        85 ~iD~lVnnAG~   95 (271)
T PRK06505         85 KLDFVVHAIGF   95 (271)
T ss_pred             CCCEEEECCcc
Confidence            79999999984

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.97  E-value=0.0038  Score=49.64  Aligned_cols=99  Identities=22%  Similarity=0.269  Sum_probs=65.2

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHH----HcC-CCE--EEcCCCccc-cccCC
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLR----SLG-ADL--AIDYTKENI-EDLPE  213 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~----~~g-~~~--v~~~~~~~~-~~~~~  213 (255)
                      +.+..+.++++|+-.| +|. |.+++.+++.++ +.++++++.+++..+.++    ++| .+.  ++..+..+. .....
T Consensus        33 l~~l~~~~~~~vlDlG-~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~  110 (198)
T PRK00377         33 LSKLRLRKGDMILDIG-CGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE  110 (198)
T ss_pred             HHHcCCCCcCEEEEeC-CcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence            3567888999999999 777 999888888653 468999999998887664    455 232  222222221 12235


Q ss_pred             CccEEEECCCCcc---ceeeeeeccccCCceEEE
Q 025278          214 KFDVVFDAVGKMC---ISIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       214 ~~d~vid~~G~~~---~~~~~~~~~~~~~G~~v~  244 (255)
                      .+|.||...+...   ....+.+.++ ++|+++.
T Consensus       111 ~~D~V~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~  143 (198)
T PRK00377        111 KFDRIFIGGGSEKLKEIISASWEIIK-KGGRIVI  143 (198)
T ss_pred             CCCEEEECCCcccHHHHHHHHHHHcC-CCcEEEE
Confidence            7999998655322   2333455666 7899875

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.0041  Score=50.27  Aligned_cols=72  Identities=19%  Similarity=0.365  Sum_probs=49.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE--EcCCCcc-ccc----c-CCCccEEEECCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA--IDYTKEN-IED----L-PEKFDVVFDAVG  223 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v--~~~~~~~-~~~----~-~~~~d~vid~~G  223 (255)
                      ++++|+|++|++|...+..+... |.+|+++++++++.+.+++++....  .|-.+.. ..+    . ..++|++|.++|
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLER-GWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhC-CCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            47999999999999988877774 9999999998877766655432222  2222211 111    1 136999999987


Q ss_pred             C
Q 025278          224 K  224 (255)
Q Consensus       224 ~  224 (255)
                      .
T Consensus        81 ~   81 (225)
T PRK08177         81 I   81 (225)
T ss_pred             c
Confidence            4

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=96.96  E-value=0.00075  Score=56.49  Aligned_cols=100  Identities=23%  Similarity=0.326  Sum_probs=58.2

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCEEEcCCCccccccCCCccE
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADLAIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~d~  217 (255)
                      .++++++++|++||-+| +| -|.++..+|+.. |++|+.++.+++..+.++    +.|...-+.....++.+....+|.
T Consensus        54 ~~~~~~l~~G~~vLDiG-cG-wG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~  130 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIG-CG-WGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDR  130 (273)
T ss_dssp             HHTTTT--TT-EEEEES--T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SE
T ss_pred             HHHHhCCCCCCEEEEeC-CC-ccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCE
Confidence            34788999999999999 66 688888899984 999999999999888774    355221111111234444458998


Q ss_pred             EEE-----CCCCc---cceeeeeeccccCCceEEEE
Q 025278          218 VFD-----AVGKM---CISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       218 vid-----~~G~~---~~~~~~~~~~~~~~G~~v~~  245 (255)
                      |+-     .+|..   .....+.+.++ ++|++++=
T Consensus       131 IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~lq  165 (273)
T PF02353_consen  131 IVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVLQ  165 (273)
T ss_dssp             EEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEEE
T ss_pred             EEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEEE
Confidence            874     34422   22344566777 89998743

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.95  E-value=0.003  Score=54.00  Aligned_cols=71  Identities=23%  Similarity=0.352  Sum_probs=52.2

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE-cCCCc-cccccCCCccEEEECCCC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI-DYTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~-~~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      +|+|+||+|-+|...+..+... |.+|++++|+.++...+...+.+.+. |..+. .+.+..+++|+||.+++.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~   74 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDE-GYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS   74 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-CCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence            6999999999999999888874 89999999987776655555654432 22222 233445689999998774

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.94  E-value=0.0042  Score=56.47  Aligned_cols=75  Identities=19%  Similarity=0.240  Sum_probs=56.2

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      .+.++++|+|.| .|..|++++.+++.. |++|++.|.++++.+.++++|...+ .... . .+....+|+||.+.|-+.
T Consensus         8 ~~~~~~~v~V~G-~G~sG~aa~~~L~~~-G~~v~~~D~~~~~~~~l~~~g~~~~-~~~~-~-~~~l~~~D~VV~SpGi~~   82 (488)
T PRK03369          8 PLLPGAPVLVAG-AGVTGRAVLAALTRF-GARPTVCDDDPDALRPHAERGVATV-STSD-A-VQQIADYALVVTSPGFRP   82 (488)
T ss_pred             cccCCCeEEEEc-CCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHhCCCEEE-cCcc-h-HhHhhcCCEEEECCCCCC
Confidence            355789999999 999999999999984 9999999987777766777887443 2211 1 122346899999999543

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0048  Score=50.76  Aligned_cols=73  Identities=18%  Similarity=0.357  Sum_probs=49.4

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCC-EEE--cCCCcc-ccc-------cCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGAD-LAI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~-~v~--~~~~~~-~~~-------~~~~~  215 (255)
                      |++++|+|++|++|...++.+.. .|.+|+++++++++.+.+.    +.+.. ..+  |-.++. ...       ..+.+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAE-EGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            57899999999999999988887 4999999999887665442    22322 223  222211 111       12468


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|++.|.
T Consensus        80 d~lI~~ag~   88 (252)
T PRK07677         80 DALINNAAG   88 (252)
T ss_pred             cEEEECCCC
Confidence            999999884

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0056  Score=50.55  Aligned_cols=78  Identities=24%  Similarity=0.295  Sum_probs=50.3

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh-HHH----HHHcCC-C-EE--EcCCCcc-----cccc-
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK-LDL----LRSLGA-D-LA--IDYTKEN-----IEDL-  211 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~-~~~----~~~~g~-~-~v--~~~~~~~-----~~~~-  211 (255)
                      .+..+++|+|+||+|++|...++-+...++.+|+++++++++ ++.    +++.+. + ++  .|..+.+     ..+. 
T Consensus         4 ~~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          4 AVGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             ccCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence            356788999999999999998876555345899999988765 433    233332 1 22  2332221     1111 


Q ss_pred             -CCCccEEEECCCC
Q 025278          212 -PEKFDVVFDAVGK  224 (255)
Q Consensus       212 -~~~~d~vid~~G~  224 (255)
                       .+++|++|.+.|.
T Consensus        84 ~~g~id~li~~ag~   97 (253)
T PRK07904         84 AGGDVDVAIVAFGL   97 (253)
T ss_pred             hcCCCCEEEEeeec
Confidence             1479999998874

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0048  Score=50.78  Aligned_cols=74  Identities=22%  Similarity=0.299  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H---cCCCE-E--EcCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S---LGADL-A--IDYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~---~g~~~-v--~~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+|+++++|...+..+.. .|.+|++++++.++.+.+. +   .+.+. .  .|..+.. ..+       ..+.
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVE-AGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG   86 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            478999999999999998888887 4999999999887765542 2   23221 1  2222211 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        87 id~lv~~ag~   96 (253)
T PRK05867         87 IDIAVCNAGI   96 (253)
T ss_pred             CCEEEECCCC
Confidence            9999999884

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.92  E-value=0.0035  Score=52.77  Aligned_cols=73  Identities=18%  Similarity=0.098  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-E--EcCCCccccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-A--IDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v--~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      .+++++|+| +|+.+.+++..+..++..+++++.|+.+|.+.+ ++++... +  +... .+.......+|+||+|++.
T Consensus       124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~-~~~~~~~~~~DiVInaTp~  200 (282)
T TIGR01809       124 AGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGD-SGGLAIEKAAEVLVSTVPA  200 (282)
T ss_pred             CCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccch-hhhhhcccCCCEEEECCCC
Confidence            578999999 899999988888876334688889998887665 4444211 1  1110 1122223578999999874

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.0056  Score=50.85  Aligned_cols=74  Identities=24%  Similarity=0.341  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc----CCC-EEE--cCCCcc-cccc------CCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL----GAD-LAI--DYTKEN-IEDL------PEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~----g~~-~v~--~~~~~~-~~~~------~~~  214 (255)
                      .+++++|+|+++++|.+.++.+.. .|++|+++++++++++.+. ++    +.+ ..+  |-.+.. ....      .++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLAR-AGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            478999999999999998888887 4999999999887765543 22    322 122  322221 1111      246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++++++|.
T Consensus        86 iD~lv~nag~   95 (263)
T PRK08339         86 PDIFFFSTGG   95 (263)
T ss_pred             CcEEEECCCC
Confidence            8999999984

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.89  E-value=0.013  Score=42.30  Aligned_cols=100  Identities=18%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCC--EEEcCCCcc-ccccCCCcc
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGAD--LAIDYTKEN-IEDLPEKFD  216 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~--~v~~~~~~~-~~~~~~~~d  216 (255)
                      ....+.++++|+-+| +|. |..+..+++...+.+++.++.++...+.++    +++..  .++..+..+ .....+.+|
T Consensus        13 ~~~~~~~~~~vldlG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   90 (124)
T TIGR02469        13 SKLRLRPGDVLWDIG-AGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD   90 (124)
T ss_pred             HHcCCCCCCEEEEeC-CCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence            445667788999999 655 999999998754678999999998877764    34432  222222111 112235799


Q ss_pred             EEEECCCCcc---ceeeeeeccccCCceEEEEe
Q 025278          217 VVFDAVGKMC---ISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       217 ~vid~~G~~~---~~~~~~~~~~~~~G~~v~~G  246 (255)
                      +|+-..+...   ....+.+.++ ++|++++-.
T Consensus        91 ~v~~~~~~~~~~~~l~~~~~~Lk-~gG~li~~~  122 (124)
T TIGR02469        91 RVFIGGSGGLLQEILEAIWRRLR-PGGRIVLNA  122 (124)
T ss_pred             EEEECCcchhHHHHHHHHHHHcC-CCCEEEEEe
Confidence            9997543222   3444566677 789888754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.87  E-value=0.019  Score=46.22  Aligned_cols=101  Identities=16%  Similarity=0.066  Sum_probs=65.1

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCCC--EEEcCCCccccccCCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~  214 (255)
                      .+....++++++||-+| + +.|..++.+++..+ ..+++.++.+++-.+.+++    .|.+  .++..+..........
T Consensus        68 ~~~~l~~~~g~~VLdIG-~-GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~  145 (212)
T PRK13942         68 MCELLDLKEGMKVLEIG-T-GSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAP  145 (212)
T ss_pred             HHHHcCCCCcCEEEEEC-C-cccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCC
Confidence            34556788999999998 4 45788888887642 2689999999987776643    3432  2232222111111247


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      +|+|+-..........+.+.++ ++|+++..
T Consensus       146 fD~I~~~~~~~~~~~~l~~~Lk-pgG~lvi~  175 (212)
T PRK13942        146 YDRIYVTAAGPDIPKPLIEQLK-DGGIMVIP  175 (212)
T ss_pred             cCEEEECCCcccchHHHHHhhC-CCcEEEEE
Confidence            9999865555555555667777 89997764

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0056  Score=50.69  Aligned_cols=74  Identities=27%  Similarity=0.421  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc-----CCCE-E--EcCCCcc-cc-------ccC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL-----GADL-A--IDYTKEN-IE-------DLP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~-----g~~~-v--~~~~~~~-~~-------~~~  212 (255)
                      .+++++|+||++++|...++.+.. .|++|+++++++++++.+. ++     +... .  .|..+.+ ..       +..
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLE-AGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            478999999999999998888887 4999999999887765442 21     1111 1  2332221 11       112


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +.+|++|+++|.
T Consensus        86 g~id~li~~Ag~   97 (265)
T PRK07062         86 GGVDMLVNNAGQ   97 (265)
T ss_pred             CCCCEEEECCCC
Confidence            468999999984

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0063  Score=49.72  Aligned_cols=74  Identities=26%  Similarity=0.342  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-EE--cCCCcc-c-------cccCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-AI--DYTKEN-I-------EDLPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~-~-------~~~~~~~d~  217 (255)
                      ++++++|+||+|++|...++.+.. .|++++++++++++.+.+ ++++... .+  |..+.. .       .+..+++|+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLA-EGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            468999999999999999988887 499999999987766554 4555432 22  222211 1       111246899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|.+.|.
T Consensus        84 vi~~ag~   90 (249)
T PRK06500         84 VFINAGV   90 (249)
T ss_pred             EEECCCC
Confidence            9999884

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0049  Score=50.84  Aligned_cols=77  Identities=26%  Similarity=0.307  Sum_probs=52.7

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCC--EE--EcCCCcc-ccc-------cCCC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGAD--LA--IDYTKEN-IED-------LPEK  214 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~--~v--~~~~~~~-~~~-------~~~~  214 (255)
                      .-++++++|+||+|++|..++..+.. .|.+|+.+++++++.+.+.+ ....  .+  .|..+.. ..+       ...+
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAE-AGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGG   86 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35778999999999999999988887 59999999998776665543 2211  22  2322221 111       1247


Q ss_pred             ccEEEECCCCc
Q 025278          215 FDVVFDAVGKM  225 (255)
Q Consensus       215 ~d~vid~~G~~  225 (255)
                      +|+||.+.|..
T Consensus        87 ~d~vi~~ag~~   97 (264)
T PRK12829         87 LDVLVNNAGIA   97 (264)
T ss_pred             CCEEEECCCCC
Confidence            99999999854

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.85  E-value=0.0044  Score=56.06  Aligned_cols=76  Identities=24%  Similarity=0.482  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh---------------------hhHHHHHHcCCCEEEcCCCc-
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST---------------------AKLDLLRSLGADLAIDYTKE-  206 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~---------------------~~~~~~~~~g~~~v~~~~~~-  206 (255)
                      ..+++|+|+| +|+.|+.++..++.. |.+|++++..+                     ...+.++++|.+..++.... 
T Consensus       139 ~~~~~V~IIG-~GpaGl~aA~~l~~~-G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~  216 (467)
T TIGR01318       139 PTGKRVAVIG-AGPAGLACADILARA-GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGR  216 (467)
T ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHc-CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCC
Confidence            3678999999 899999999999984 99998887654                     24566788998776654221 


Q ss_pred             --cccccCCCccEEEECCCCcc
Q 025278          207 --NIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       207 --~~~~~~~~~d~vid~~G~~~  226 (255)
                        ...+...++|.||.++|...
T Consensus       217 ~~~~~~~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       217 DISLDDLLEDYDAVFLGVGTYR  238 (467)
T ss_pred             ccCHHHHHhcCCEEEEEeCCCC
Confidence              11222247999999999754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=96.85  E-value=0.003  Score=53.33  Aligned_cols=148  Identities=22%  Similarity=0.284  Sum_probs=80.5

Q ss_pred             CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCc
Q 025278           82 FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG  161 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g  161 (255)
                      +++|+|.+..+            .|.++-.-+...++.|.+++.+-..-- +.+- ..+..++. ..++|++||=.| +|
T Consensus       108 ~~vg~~~~I~P------------~w~~~~~~~~~~~I~idPg~AFGTG~H-~TT~-lcl~~l~~-~~~~g~~vLDvG-~G  171 (295)
T PF06325_consen  108 IRVGDRLVIVP------------SWEEYPEPPDEIVIEIDPGMAFGTGHH-PTTR-LCLELLEK-YVKPGKRVLDVG-CG  171 (295)
T ss_dssp             EEECTTEEEEE------------TT----SSTTSEEEEESTTSSS-SSHC-HHHH-HHHHHHHH-HSSTTSEEEEES--T
T ss_pred             EEECCcEEEEC------------CCcccCCCCCcEEEEECCCCcccCCCC-HHHH-HHHHHHHH-hccCCCEEEEeC-Cc
Confidence            55677666554            355552223456677777765422110 1111 12223322 267889999888 44


Q ss_pred             hHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cC--CCEEEcCCCccccccCCCccEEEECCCCccceeee---e
Q 025278          162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LG--ADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVY---Q  232 (255)
Q Consensus       162 ~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g--~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~~~---~  232 (255)
                       .|.+++..++. +..+|+++|.++...+.+++    .|  ....+. ...+..  ...+|+|+-..-.......+   .
T Consensus       172 -SGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~~~~~--~~~~dlvvANI~~~vL~~l~~~~~  246 (295)
T PF06325_consen  172 -SGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LSEDLV--EGKFDLVVANILADVLLELAPDIA  246 (295)
T ss_dssp             -TSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CTSCTC--CS-EEEEEEES-HHHHHHHHHHCH
T ss_pred             -HHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-Eecccc--cccCCEEEECCCHHHHHHHHHHHH
Confidence             48888888875 56679999999887666643    22  222122 111111  25799999766544333332   3


Q ss_pred             eccccCCceEEEEeeccCC
Q 025278          233 KCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       233 ~~~~~~~G~~v~~G~~~~~  251 (255)
                      ..++ ++|++++-|.....
T Consensus       247 ~~l~-~~G~lIlSGIl~~~  264 (295)
T PF06325_consen  247 SLLK-PGGYLILSGILEEQ  264 (295)
T ss_dssp             HHEE-EEEEEEEEEEEGGG
T ss_pred             HhhC-CCCEEEEccccHHH
Confidence            3344 68999999987653

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.0071  Score=50.57  Aligned_cols=74  Identities=26%  Similarity=0.289  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc-CCCE-E--EcCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL-GADL-A--IDYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~-g~~~-v--~~~~~~~-~~~~-------~~~~d~  217 (255)
                      .+++++|+|++|++|...++.+.. .|.+|+++++++++.+.+.+. +... .  .|..+.. ....       .+++|+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~   81 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALA-AGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDV   81 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHh-CcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            357899999999999998888877 499999999998887666543 2211 1  2322221 1111       136899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|++.|.
T Consensus        82 vv~~ag~   88 (277)
T PRK06180         82 LVNNAGY   88 (277)
T ss_pred             EEECCCc
Confidence            9999985

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.0073  Score=49.63  Aligned_cols=74  Identities=23%  Similarity=0.367  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE--EE--cCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL--AI--DYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~--v~--~~~~~~-~~~-------~~~~~d~  217 (255)
                      .+++++|+||+|++|...++.+.. .|.+|+++.++++..+...++....  .+  |..+.. ...       ...++|+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAA-KGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            478999999999999998888877 4999999999877655554432211  22  222211 111       1246899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|.++|.
T Consensus        93 vi~~ag~   99 (255)
T PRK06841         93 LVNSAGV   99 (255)
T ss_pred             EEECCCC
Confidence            9999984

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=96.82  E-value=0.0065  Score=50.94  Aligned_cols=103  Identities=24%  Similarity=0.371  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCCchHHHH-HHHHHHHhcCCcEEEEecChhhHHHHH-----HcCC---CEEEcCCCcc--cccc---CC-
Q 025278          149 SAGKSILVLGGAGGVGTM-VIQLAKHVFGASKVAATSSTAKLDLLR-----SLGA---DLAIDYTKEN--IEDL---PE-  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~-a~~~a~~~~g~~vi~~~~~~~~~~~~~-----~~g~---~~v~~~~~~~--~~~~---~~-  213 (255)
                      +.|++.+|+||+.++|.+ +-++|+  +|.+++.+.|+++|++..+     +.++   .+++|...++  +++.   .. 
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk--rG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~  124 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK--RGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAG  124 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcC
Confidence            457999999999999987 556666  4999999999999997652     3442   1346766555  3322   22 


Q ss_pred             -CccEEEECCCCcc-cee---------------------------eeeeccccCCceEEEEeeccCCCC
Q 025278          214 -KFDVVFDAVGKMC-ISI---------------------------VYQKCDKFQEKSLINFGLFRQEVP  253 (255)
Q Consensus       214 -~~d~vid~~G~~~-~~~---------------------------~~~~~~~~~~G~~v~~G~~~~~~~  253 (255)
                       .+-+.+|++|-.. ...                           ....|.....|.++.+|.+.+..|
T Consensus       125 ~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p  193 (312)
T KOG1014|consen  125 LDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIP  193 (312)
T ss_pred             CceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccccc
Confidence             4667888888322 110                           023344435799999998887544

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.82  E-value=0.0076  Score=49.89  Aligned_cols=74  Identities=18%  Similarity=0.168  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecChhhH---HHH-HHcCCCEEEcCCCccccc----------cCC
Q 025278          150 AGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSSTAKL---DLL-RSLGADLAIDYTKENIED----------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~~~~---~~~-~~~g~~~v~~~~~~~~~~----------~~~  213 (255)
                      .|++++|+||+  +++|.+.++.+... |++|++++++++..   +.+ ++++....+..+-.+..+          ..+
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~-G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRAL-GAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHc-CCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence            57899999987  49999988877774 99999988875432   222 344432333222111111          124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|++.|.
T Consensus        88 ~ld~lv~nAg~   98 (258)
T PRK07533         88 RLDFLLHSIAF   98 (258)
T ss_pred             CCCEEEEcCcc
Confidence            68999999984

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.0076  Score=52.03  Aligned_cols=74  Identities=18%  Similarity=0.261  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE---EcCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA---IDYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v---~~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++++.+    ++.|.+..   .|..+.. ...       ..+.
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~-~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~   85 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFAR-RGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP   85 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            467999999999999999888877 499999999988876544    33454322   2332221 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        86 iD~lInnAg~   95 (334)
T PRK07109         86 IDTWVNNAMV   95 (334)
T ss_pred             CCEEEECCCc
Confidence            9999999984

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.0077  Score=51.47  Aligned_cols=42  Identities=24%  Similarity=0.316  Sum_probs=35.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      .|++++|+||++++|...+..+.. .|++|+++.++.++.+.+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~-~G~~Vil~~R~~~~~~~~   54 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAA-AGAEVILPVRNRAKGEAA   54 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            478999999999999998887776 499999999988776543

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.80  E-value=0.0082  Score=49.36  Aligned_cols=74  Identities=28%  Similarity=0.479  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-cc-------ccCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IE-------DLPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~-------~~~~~  214 (255)
                      .+++++|+|+++++|...+..+.. .|.+|+++++++++++.+    ++.+.+. .+  |..+.+ ..       +..+.
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAR-EGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG   83 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            467999999999999998888777 499999999988776654    2234222 22  222211 11       11247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.++|.
T Consensus        84 id~li~~ag~   93 (254)
T PRK07478         84 LDIAFNNAGT   93 (254)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.0077  Score=49.52  Aligned_cols=73  Identities=25%  Similarity=0.375  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCE-E--EcCCCc-ccccc-CCCccEEEEC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADL-A--IDYTKE-NIEDL-PEKFDVVFDA  221 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~-v--~~~~~~-~~~~~-~~~~d~vid~  221 (255)
                      ++++||+|++|++|...++.+.. .|++|+++++++++.+.+++    .+... +  .|..+. .+... ..++|++|.+
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLAR-KGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            46899999999999999988887 49999999998776654432    23221 1  233222 11111 2379999999


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      +|.
T Consensus        81 ag~   83 (257)
T PRK09291         81 AGI   83 (257)
T ss_pred             CCc
Confidence            883

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.78  E-value=0.008  Score=49.17  Aligned_cols=74  Identities=24%  Similarity=0.378  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE---EEcCCCc-cccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL---AIDYTKE-NIED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~---v~~~~~~-~~~~-------~~~~  214 (255)
                      .+++++|+|++|++|..+++.+.. .|.+++.+++++++.+.+    ++.+...   ..|-.+. ...+       ..++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~-~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQ-KGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ   82 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999998887 489999999988766544    2334332   1222221 1111       1246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.++|.
T Consensus        83 id~vi~~ag~   92 (253)
T PRK08217         83 LNGLINNAGI   92 (253)
T ss_pred             CCEEEECCCc
Confidence            8999999984

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.77  E-value=0.021  Score=50.69  Aligned_cols=97  Identities=16%  Similarity=0.267  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHH-HHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLL-RSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      -.+.+|+|+| +|++|.+++..+... | .+++++.|+.+|.+.+ .+++...++..  ++..+....+|+||+|++++.
T Consensus       179 l~~kkvlviG-aG~~a~~va~~L~~~-g~~~I~V~nRt~~ra~~La~~~~~~~~~~~--~~l~~~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        179 ISSKNVLIIG-AGQTGELLFRHVTAL-APKQIMLANRTIEKAQKITSAFRNASAHYL--SELPQLIKKADIIIAAVNVLE  254 (414)
T ss_pred             ccCCEEEEEc-CcHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHhcCCeEecH--HHHHHHhccCCEEEECcCCCC
Confidence            4678999999 899999999888875 6 4677778888776554 55652223322  122333467999999999887


Q ss_pred             ceeeeeeccccCCceEEEEeeccC
Q 025278          227 ISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       227 ~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ..... ...+-+.=.++-++.++.
T Consensus       255 ~vi~~-~~~~~~~~~~iDLavPRd  277 (414)
T PRK13940        255 YIVTC-KYVGDKPRVFIDISIPQA  277 (414)
T ss_pred             eeECH-HHhCCCCeEEEEeCCCCC
Confidence            55442 222101113566666665

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.0077  Score=49.84  Aligned_cols=74  Identities=19%  Similarity=0.262  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc--CCC-EEEcCCCcccccc---------CCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL--GAD-LAIDYTKENIEDL---------PEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~--g~~-~v~~~~~~~~~~~---------~~~~d  216 (255)
                      ++++++|+||+|++|...+..+.. .|.+|+++++++++.+.+. ++  +.. ..+..+-.+..+.         .+.+|
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id   82 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAA-AGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN   82 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            467899999999999998888877 4999999999988776553 22  211 1222111111110         24689


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|.++|.
T Consensus        83 ~lv~~ag~   90 (263)
T PRK09072         83 VLINNAGV   90 (263)
T ss_pred             EEEECCCC
Confidence            99999884

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.77  E-value=0.0084  Score=48.14  Aligned_cols=100  Identities=19%  Similarity=0.119  Sum_probs=63.4

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHH----HHcCCCE--EEcCCCccccccCCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLL----RSLGADL--AIDYTKENIEDLPEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~----~~~g~~~--v~~~~~~~~~~~~~~  214 (255)
                      .++...+++|++||-+| + +.|..++.+++..+. .+|+.++++++-.+.+    ++++.+.  ++..+...-......
T Consensus        64 ~l~~L~l~pg~~VLeIG-t-GsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ap  141 (209)
T PF01135_consen   64 MLEALDLKPGDRVLEIG-T-GSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAP  141 (209)
T ss_dssp             HHHHTTC-TT-EEEEES---TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-S
T ss_pred             HHHHHhcCCCCEEEEec-C-CCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCC
Confidence            45667799999999999 3 458888888887632 3588888888755544    4456432  222221111111247


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEE
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~  244 (255)
                      +|.|+=+.+.+.....+.+.++ .+|+++.
T Consensus       142 fD~I~v~~a~~~ip~~l~~qL~-~gGrLV~  170 (209)
T PF01135_consen  142 FDRIIVTAAVPEIPEALLEQLK-PGGRLVA  170 (209)
T ss_dssp             EEEEEESSBBSS--HHHHHTEE-EEEEEEE
T ss_pred             cCEEEEeeccchHHHHHHHhcC-CCcEEEE
Confidence            9999998887777777778787 8899887

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.0084  Score=49.65  Aligned_cols=74  Identities=26%  Similarity=0.288  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-E--EcCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-A--IDYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v--~~~~~~~-~~~-------~~~~~d~  217 (255)
                      .+++++|+|++|++|...+..+.. .|++|+++++++++.+.+ ++++... .  .|..+.. ..+       ..+.+|+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   83 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVA-AGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI   83 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            468999999999999998888877 499999999988766554 4555321 2  2322221 111       1246899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|++.|.
T Consensus        84 lv~~ag~   90 (261)
T PRK08265         84 LVNLACT   90 (261)
T ss_pred             EEECCCC
Confidence            9999884

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.77  E-value=0.0083  Score=49.04  Aligned_cols=74  Identities=20%  Similarity=0.337  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcC--CC-EEE--cCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLG--AD-LAI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g--~~-~v~--~~~~~~-~~~-------~~~~~  215 (255)
                      .+++++|+||+|++|...++.+.. .|.+|+++++++++.+.+ ..+.  .. ..+  |..+.. +..       ....+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   82 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAA-EGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV   82 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            467999999999999998888877 499999999998776554 2322  11 122  222111 111       12368


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.+.|.
T Consensus        83 d~vi~~ag~   91 (251)
T PRK07231         83 DILVNNAGT   91 (251)
T ss_pred             CEEEECCCC
Confidence            999999984

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.76  E-value=0.0065  Score=50.95  Aligned_cols=72  Identities=22%  Similarity=0.274  Sum_probs=49.1

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCE----EEcCCCccccccCCCccEEEECC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADL----AIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~----v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      ..+|++++|.| +|+.+.+++..++..+..+++++.|+.+|.+.+. .++...    .....  +... ...+|++|||+
T Consensus       123 ~~~~~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~--~~~~-~~~~dliINaT  198 (283)
T COG0169         123 DVTGKRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALA--DLEG-LEEADLLINAT  198 (283)
T ss_pred             ccCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccccc--cccc-ccccCEEEECC
Confidence            34689999999 8999999888888863367888899999877664 444211    11111  1111 11589999998


Q ss_pred             C
Q 025278          223 G  223 (255)
Q Consensus       223 G  223 (255)
                      .
T Consensus       199 p  199 (283)
T COG0169         199 P  199 (283)
T ss_pred             C
Confidence            7

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.75  E-value=0.0088  Score=48.91  Aligned_cols=74  Identities=26%  Similarity=0.366  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh--HHHHHHcCCC-EEE--cCCCcc-cc-------ccCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK--LDLLRSLGAD-LAI--DYTKEN-IE-------DLPEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~--~~~~~~~g~~-~v~--~~~~~~-~~-------~~~~~~d  216 (255)
                      .+++++|+|++|++|...+..+.. .|.+|+++++++..  .+.+++.+.. ..+  |..+.. ..       +..+++|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~-~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAE-AGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999998888877 49999999886521  2233444432 222  222211 11       1124699


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|++.|.
T Consensus        83 ~li~~ag~   90 (248)
T TIGR01832        83 ILVNNAGI   90 (248)
T ss_pred             EEEECCCC
Confidence            99999884

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.0094  Score=48.35  Aligned_cols=74  Identities=22%  Similarity=0.326  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCC---CEEE--cCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGA---DLAI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~---~~v~--~~~~~~-~~~-------~~~~~  215 (255)
                      .+++++|+||+|.+|...++.+.. .|.+|+++++++++.+.+ +++..   -+.+  |..+.. +.+       ...++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLA-EGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL   83 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHH-CCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999988877 499999999988776554 33321   1222  222211 111       12378


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|++.|.
T Consensus        84 d~vi~~ag~   92 (237)
T PRK07326         84 DVLIANAGV   92 (237)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK06194 hypothetical protein; Provisional

Probab=96.73  E-value=0.01  Score=49.73  Aligned_cols=74  Identities=24%  Similarity=0.395  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHc---CCCE-EEcCCCcccc---cc-------CCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSL---GADL-AIDYTKENIE---DL-------PEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~---g~~~-v~~~~~~~~~---~~-------~~~  214 (255)
                      .++++||+||+|++|...+..+.. .|++|++++++.++++.. +++   +... ++..+-.+..   +.       .+.
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   83 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAA-LGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA   83 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999998888777 499999999887665443 222   3322 2222211111   11       236


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        84 id~vi~~Ag~   93 (287)
T PRK06194         84 VHLLFNNAGV   93 (287)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.72  E-value=0.01  Score=49.22  Aligned_cols=75  Identities=27%  Similarity=0.381  Sum_probs=50.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCC-EE--EcCCCcc-ccc-------cCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGAD-LA--IDYTKEN-IED-------LPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~-~~~-------~~~  213 (255)
                      .++++++|+||+|++|...++.+.. .|++|+++++++++.+..    .+.+.. ..  .|..+.. ...       ..+
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~   85 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFAR-AGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG   85 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999999888877 499999999987765433    222322 12  2332221 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|.+.|.
T Consensus        86 ~iD~vi~~ag~   96 (264)
T PRK07576         86 PIDVLVSGAAG   96 (264)
T ss_pred             CCCEEEECCCC
Confidence            68999998873

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.72  E-value=0.01  Score=49.68  Aligned_cols=74  Identities=22%  Similarity=0.286  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecChh---hHHHH-HHcCCCEEE--cCCCcc-cc-------ccCC
Q 025278          150 AGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSSTA---KLDLL-RSLGADLAI--DYTKEN-IE-------DLPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~~---~~~~~-~~~g~~~v~--~~~~~~-~~-------~~~~  213 (255)
                      .+++++|+||+  +++|.+.++.+.. .|++|++..++++   +.+.+ ++++....+  |-.+.. ..       +..+
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~-~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFE-QGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHH-CCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            47899999986  7999998887777 4999999888742   33333 345533332  332221 11       1124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|++.|.
T Consensus        83 ~iDilVnnAG~   93 (274)
T PRK08415         83 KIDFIVHSVAF   93 (274)
T ss_pred             CCCEEEECCcc
Confidence            78999999984

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.71  E-value=0.011  Score=48.87  Aligned_cols=71  Identities=21%  Similarity=0.325  Sum_probs=47.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H---cCCCEEE--cCCCcc-cc-------ccCCCccEE
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S---LGADLAI--DYTKEN-IE-------DLPEKFDVV  218 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~---~g~~~v~--~~~~~~-~~-------~~~~~~d~v  218 (255)
                      +++|+|+++++|...++.+.. .|++|+++++++++++.+. +   .+..+.+  |..+.. ..       +..+++|++
T Consensus         2 ~vlItGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l   80 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLK-KGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL   80 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            689999999999998887777 4899999999887765442 2   2322222  222211 11       112479999


Q ss_pred             EECCCC
Q 025278          219 FDAVGK  224 (255)
Q Consensus       219 id~~G~  224 (255)
                      |++.|.
T Consensus        81 i~naG~   86 (259)
T PRK08340         81 VWNAGN   86 (259)
T ss_pred             EECCCC
Confidence            999984

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.0093  Score=48.26  Aligned_cols=74  Identities=20%  Similarity=0.294  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE-EcCCCcc-ccc-------cCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA-IDYTKEN-IED-------LPEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v-~~~~~~~-~~~-------~~~~~d  216 (255)
                      +++++||+|++|.+|..+++.+.+ .|++|+++++++++....    +..+...+ .|..+.. ...       ..+++|
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAA-RGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD   84 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHH-CCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence            478999999999999999888877 499999999977654322    22333221 2222211 111       123789


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      +||.+.|.
T Consensus        85 ~vi~~ag~   92 (239)
T PRK12828         85 ALVNIAGA   92 (239)
T ss_pred             EEEECCcc
Confidence            99999884

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.0096  Score=49.15  Aligned_cols=74  Identities=30%  Similarity=0.396  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc-----CCC-EEE--cCCCcc-ccc-------cC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL-----GAD-LAI--DYTKEN-IED-------LP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~-----g~~-~v~--~~~~~~-~~~-------~~  212 (255)
                      .+++++|+|+++++|...+..+.. .|++|+++++++++.+.+. ++     +.. ..+  |..+.. ...       ..
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~-~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAR-EGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            468999999999999998888877 4999999999887765442 22     221 122  222211 111       12


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +.+|++|++.|.
T Consensus        85 g~id~li~~ag~   96 (260)
T PRK07063         85 GPLDVLVNNAGI   96 (260)
T ss_pred             CCCcEEEECCCc
Confidence            478999999984

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.70  E-value=0.0074  Score=56.94  Aligned_cols=76  Identities=20%  Similarity=0.416  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh---------------------hHHHHHHcCCCEEEcCCC--
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA---------------------KLDLLRSLGADLAIDYTK--  205 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~---------------------~~~~~~~~g~~~v~~~~~--  205 (255)
                      ..+++|+|+| +|+.|+.++..++.. |.+|+++++.+.                     +.+.++++|.+...+..-  
T Consensus       325 ~~~~~VaIIG-aGpAGLsaA~~L~~~-G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~  402 (654)
T PRK12769        325 KSDKRVAIIG-AGPAGLACADVLARN-GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK  402 (654)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC
Confidence            3588999999 899999999999985 999999987542                     345567788765544321  


Q ss_pred             -ccccccCCCccEEEECCCCcc
Q 025278          206 -ENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       206 -~~~~~~~~~~d~vid~~G~~~  226 (255)
                       ....+...++|.||.++|...
T Consensus       403 ~i~~~~~~~~~DavilAtGa~~  424 (654)
T PRK12769        403 DISLESLLEDYDAVFVGVGTYR  424 (654)
T ss_pred             cCCHHHHHhcCCEEEEeCCCCC
Confidence             112222347999999999643

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.70  E-value=0.01  Score=50.83  Aligned_cols=73  Identities=19%  Similarity=0.299  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcC---CC-EE--EcCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLG---AD-LA--IDYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g---~~-~v--~~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+||+|++|...++.+.. .|.+|++++++.++.+.+ +++.   .. ..  .|-.+.. ...       ....
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   83 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAK-RGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP   83 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            468999999999999998887777 489999999988876554 3332   11 11  2222211 111       1235


Q ss_pred             ccEEEECCC
Q 025278          215 FDVVFDAVG  223 (255)
Q Consensus       215 ~d~vid~~G  223 (255)
                      +|++|+++|
T Consensus        84 iD~li~nAg   92 (322)
T PRK07453         84 LDALVCNAA   92 (322)
T ss_pred             ccEEEECCc
Confidence            899999998

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.013  Score=47.71  Aligned_cols=75  Identities=21%  Similarity=0.245  Sum_probs=50.2

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE-EE--cCCCcc-ccc-------cCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL-AI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~-v~--~~~~~~-~~~-------~~~  213 (255)
                      ..+++++|+|++|++|..++..+.. .|.+|+++++++++.+.+.    +.+... .+  |-.+.+ ...       ...
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAK-AGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG   82 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3567899999999999998888877 4899999999887665442    223221 22  222211 111       123


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|.+.|.
T Consensus        83 ~id~lv~~ag~   93 (241)
T PRK07454         83 CPDVLINNAGM   93 (241)
T ss_pred             CCCEEEECCCc
Confidence            68999999984

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.011  Score=47.97  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCC-
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPE-  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~-  213 (255)
                      .|++++|+|+++++|.+.+.-+.. .|++|+++.+++++++.+    ++.+.+. .+  |..+.. ...       ..+ 
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~-~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFAR-LGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            478999999999999998777776 499999999988876544    2334332 22  222211 111       123 


Q ss_pred             CccEEEECCC
Q 025278          214 KFDVVFDAVG  223 (255)
Q Consensus       214 ~~d~vid~~G  223 (255)
                      .+|++|++.|
T Consensus        83 ~iD~li~nag   92 (227)
T PRK08862         83 APDVLVNNWT   92 (227)
T ss_pred             CCCEEEECCc
Confidence            6999999997

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.012  Score=49.32  Aligned_cols=74  Identities=27%  Similarity=0.411  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+|++|++|...+..+.. .|++|+++++++++++.+    ++.+.+. .+  |-.+.. ..+       ..+.
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~-~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   83 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFAR-RGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGH   83 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999998888877 499999999887766543    2234322 12  222211 111       1246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|++.|.
T Consensus        84 id~li~nAg~   93 (275)
T PRK05876         84 VDVVFSNAGI   93 (275)
T ss_pred             CCEEEECCCc
Confidence            8999999983

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.68  E-value=0.027  Score=48.50  Aligned_cols=97  Identities=12%  Similarity=0.133  Sum_probs=62.3

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHH-HH----cCCCEEEcCCCccccccCCCccEEEE
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLL-RS----LGADLAIDYTKENIEDLPEKFDVVFD  220 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~-~~----~g~~~v~~~~~~~~~~~~~~~d~vid  220 (255)
                      ..+..++++|+| +|..|...+..+....+. ++.+++++++|.+.+ ++    ++.... ..  .+..+.....|+|+.
T Consensus       123 a~~~~~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~-~~--~~~~~~~~~aDiVi~  198 (325)
T PRK08618        123 AREDAKTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIY-VV--NSADEAIEEADIIVT  198 (325)
T ss_pred             cCCCCcEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEE-Ee--CCHHHHHhcCCEEEE
Confidence            334567899999 999998776554433354 555778888876654 33    343321 12  223334468999999


Q ss_pred             CCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          221 AVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       221 ~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |+++.... .. ..++ ++-.++.+|.+..
T Consensus       199 aT~s~~p~-i~-~~l~-~G~hV~~iGs~~p  225 (325)
T PRK08618        199 VTNAKTPV-FS-EKLK-KGVHINAVGSFMP  225 (325)
T ss_pred             ccCCCCcc-hH-HhcC-CCcEEEecCCCCc
Confidence            99977533 33 6666 6667888888654

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.67  E-value=0.01  Score=49.17  Aligned_cols=74  Identities=26%  Similarity=0.361  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCCc--hHHHHHHHHHHHhcCCcEEEEecChh---hHHHH-HHcCCCEE--EcCCCcc-cc-------ccCC
Q 025278          150 AGKSILVLGGAG--GVGTMVIQLAKHVFGASKVAATSSTA---KLDLL-RSLGADLA--IDYTKEN-IE-------DLPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g--~~G~~a~~~a~~~~g~~vi~~~~~~~---~~~~~-~~~g~~~v--~~~~~~~-~~-------~~~~  213 (255)
                      .|++++|+||++  ++|.+.++.+.. .|++|++..++++   +.+.+ ++.|....  .|-.+.. ..       +..+
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~-~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKK-HGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHH-cCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            578999999886  899998877666 4899988877642   22222 23353332  2332221 11       1124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|+++++.|.
T Consensus        86 ~iDilVnnag~   96 (260)
T PRK06603         86 SFDFLLHGMAF   96 (260)
T ss_pred             CccEEEEcccc
Confidence            69999999884

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.66  E-value=0.0053  Score=54.31  Aligned_cols=74  Identities=27%  Similarity=0.375  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCC-EE--EcCCCc-cccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGAD-LA--IDYTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~-~v--~~~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      .+++++|+||+|++|.+.+..+.. .|.+|+++++++++++.. .+.+.. ..  .|..+. ...+..+++|++|++.|.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~-~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAGi  255 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQ-QGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHGI  255 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCCc
Confidence            478999999999999998887776 499999999887765432 221111 12  232222 122234579999999884

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.65  E-value=0.022  Score=47.70  Aligned_cols=75  Identities=11%  Similarity=0.094  Sum_probs=49.8

Q ss_pred             HHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCccccccCCCccEEE
Q 025278          141 EGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKENIEDLPEKFDVVF  219 (255)
Q Consensus       141 ~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~d~vi  219 (255)
                      .+++......+++++|+| +|+.+.+++..++.++..++.++.|+++|.+.+. +++...    . ...  ....+|+||
T Consensus       112 ~~L~~~~~~~~~~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~----~-~~~--~~~~~dlvI  183 (272)
T PRK12550        112 KLLASYQVPPDLVVALRG-SGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEW----R-PDL--GGIEADILV  183 (272)
T ss_pred             HHHHhcCCCCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcc----h-hhc--ccccCCEEE
Confidence            344433444567999999 8999999888888763346888899988877653 444211    1 011  123589999


Q ss_pred             ECCC
Q 025278          220 DAVG  223 (255)
Q Consensus       220 d~~G  223 (255)
                      +|+.
T Consensus       184 NaTp  187 (272)
T PRK12550        184 NVTP  187 (272)
T ss_pred             ECCc
Confidence            9976

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.011  Score=48.58  Aligned_cols=74  Identities=23%  Similarity=0.299  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH---cCCC-EEE--cCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS---LGAD-LAI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~---~g~~-~v~--~~~~~~-~~~-------~~~~~  215 (255)
                      .+++++|+||+|++|...++.+.. .|++++++++++++.+..++   .+.. ..+  |..+.. ...       ...++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAE-EGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI   84 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-cCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            467999999999999998877777 49999999988877644433   3422 122  222211 111       12368


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.++|.
T Consensus        85 d~vi~~ag~   93 (258)
T PRK08628         85 DGLVNNAGV   93 (258)
T ss_pred             CEEEECCcc
Confidence            999999984

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.65  E-value=0.011  Score=48.53  Aligned_cols=74  Identities=23%  Similarity=0.369  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+|++|++|...++.+.. .|.+|+++++++++.+.+    ++.|... .+  |..+.. ..+       ....
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQ-AGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP   87 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999888877 499999999987765543    2223221 22  322211 111       1246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        88 ~d~li~~ag~   97 (255)
T PRK07523         88 IDILVNNAGM   97 (255)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.012  Score=48.09  Aligned_cols=74  Identities=22%  Similarity=0.307  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H---cCCC-EEE--cCCCcc-cc-------ccCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S---LGAD-LAI--DYTKEN-IE-------DLPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~---~g~~-~v~--~~~~~~-~~-------~~~~~  214 (255)
                      .+++++|+|++|++|...+..+... |.+++++++++++.+.+. +   .+.. ..+  |..+.. ..       +..++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALARE-GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG   83 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4688999999999999988888774 999999999876654332 2   2211 222  222211 11       11236


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.++|.
T Consensus        84 id~vi~~ag~   93 (250)
T PRK07774         84 IDYLVNNAAI   93 (250)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK05717 oxidoreductase; Validated

Probab=96.64  E-value=0.012  Score=48.41  Aligned_cols=75  Identities=20%  Similarity=0.272  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCC-EE--EcCCCcc-c----cc---cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGAD-LA--IDYTKEN-I----ED---LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~-~v--~~~~~~~-~----~~---~~~~~d~  217 (255)
                      .|++++|+|++|++|...+..+... |++|++++++.++.+.. ++++.. ..  .|..+.. .    .+   ..+.+|+
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   87 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAE-GWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA   87 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4789999999999999988888774 89999998877665443 344422 12  2222211 1    11   1236899


Q ss_pred             EEECCCCc
Q 025278          218 VFDAVGKM  225 (255)
Q Consensus       218 vid~~G~~  225 (255)
                      +|.+.|..
T Consensus        88 li~~ag~~   95 (255)
T PRK05717         88 LVCNAAIA   95 (255)
T ss_pred             EEECCCcc
Confidence            99999843

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.64  E-value=0.02  Score=48.73  Aligned_cols=95  Identities=13%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHH-HHcC---CCEEEcCCCccccccCCCccEEEECC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLL-RSLG---ADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~-~~~g---~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      -....+++|+| +|..|.+.+..+...++ .++.+..++++|.+.+ +++.   ....    ..+..+...+.|+|+.|+
T Consensus       122 ~~~~~~v~IiG-aG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~----~~~~~~av~~aDiVitaT  196 (304)
T PRK07340        122 PAPPGDLLLIG-TGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE----PLDGEAIPEAVDLVVTAT  196 (304)
T ss_pred             CCCCCEEEEEC-CcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE----ECCHHHHhhcCCEEEEcc
Confidence            35667999999 89999998888865445 4577778988876654 4443   2211    123344456899999999


Q ss_pred             CCccceeeeeeccccCCceEEEEeeccC
Q 025278          223 GKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       223 G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+..-....  ..+ ++-.+..+|.+..
T Consensus       197 ~s~~Pl~~~--~~~-~g~hi~~iGs~~p  221 (304)
T PRK07340        197 TSRTPVYPE--AAR-AGRLVVAVGAFTP  221 (304)
T ss_pred             CCCCceeCc--cCC-CCCEEEecCCCCC
Confidence            977644433  355 6678888887654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.64  E-value=0.022  Score=45.60  Aligned_cols=100  Identities=15%  Similarity=0.027  Sum_probs=64.3

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHH----HcCCC---EEEcCCCccccccCCC
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLR----SLGAD---LAIDYTKENIEDLPEK  214 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~----~~g~~---~v~~~~~~~~~~~~~~  214 (255)
                      ++...++++++||=.| + +.|..++.+++.++ +.+++.++.+++-.+.++    +.+..   .++..+..........
T Consensus        65 ~~~l~~~~~~~VLDiG-~-GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~  142 (205)
T PRK13944         65 CELIEPRPGMKILEVG-T-GSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP  142 (205)
T ss_pred             HHhcCCCCCCEEEEEC-c-CccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence            3556778999999998 4 44888877877642 468999999988766554    34432   2333322211111347


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      +|+|+-+.........+.+.++ ++|+++..
T Consensus       143 fD~Ii~~~~~~~~~~~l~~~L~-~gG~lvi~  172 (205)
T PRK13944        143 FDAIIVTAAASTIPSALVRQLK-DGGVLVIP  172 (205)
T ss_pred             ccEEEEccCcchhhHHHHHhcC-cCcEEEEE
Confidence            9999976665554555566677 88998763

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.014  Score=48.26  Aligned_cols=74  Identities=23%  Similarity=0.390  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc----CCC-EEE--cCCCcc-cc---ccCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL----GAD-LAI--DYTKEN-IE---DLPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~----g~~-~v~--~~~~~~-~~---~~~~~~d~  217 (255)
                      .+++++|+|+++++|...++.+... |++|+++++++++.+.+. ++    +.. ..+  |-.+.. ..   +..+.+|+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAE-GCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            4789999999999999988888774 899999999887765532 22    322 222  222111 11   11347999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|.+.|.
T Consensus        85 lv~~ag~   91 (259)
T PRK06125         85 LVNNAGA   91 (259)
T ss_pred             EEECCCC
Confidence            9999884

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.63  E-value=0.0045  Score=54.07  Aligned_cols=83  Identities=27%  Similarity=0.344  Sum_probs=58.8

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcC---C-CEEEcCCCc-cccccCCCccEEEECCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLG---A-DLAIDYTKE-NIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g---~-~~v~~~~~~-~~~~~~~~~d~vid~~G~~~  226 (255)
                      ++|||+| +|.+|+.+++.+.+.+..+|.+.+|+.++++.+....   . ...+|..+. ...+..++.|+||++.+...
T Consensus         2 ~~ilviG-aG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~   80 (389)
T COG1748           2 MKILVIG-AGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV   80 (389)
T ss_pred             CcEEEEC-CchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence            5789999 7999999999977643389999999999998886553   1 233444333 23344567899999998666


Q ss_pred             ceeeeeecc
Q 025278          227 ISIVYQKCD  235 (255)
Q Consensus       227 ~~~~~~~~~  235 (255)
                      .......++
T Consensus        81 ~~~i~ka~i   89 (389)
T COG1748          81 DLTILKACI   89 (389)
T ss_pred             hHHHHHHHH
Confidence            554444444

>PRK08643 acetoin reductase; Validated

Probab=96.63  E-value=0.012  Score=48.36  Aligned_cols=73  Identities=18%  Similarity=0.226  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE-EE--cCCCcc-cc----c---cCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL-AI--DYTKEN-IE----D---LPEKF  215 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~-v~--~~~~~~-~~----~---~~~~~  215 (255)
                      +++++|+|++|++|...++.+.. .|++|+++++++++.+.+.    +.+... .+  |..+.. ..    +   ..+++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVE-DGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999888887 4999999999887665442    223221 12  222211 11    1   12468


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.+.|.
T Consensus        81 d~vi~~ag~   89 (256)
T PRK08643         81 NVVVNNAGV   89 (256)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.61  E-value=0.012  Score=48.45  Aligned_cols=75  Identities=25%  Similarity=0.351  Sum_probs=50.6

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H---cCCC---EEEcCCCcc-ccc-------cCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S---LGAD---LAIDYTKEN-IED-------LPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~---~g~~---~v~~~~~~~-~~~-------~~~  213 (255)
                      -.+++++|+||+|++|...+..+.. .|++|+++++++++.+.+. +   .+..   ...|..+.. ...       ..+
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAAR-AGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG   81 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999998888877 4999999999887665442 2   2322   122322211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|.+.|.
T Consensus        82 ~~d~vi~~ag~   92 (258)
T PRK07890         82 RVDALVNNAFR   92 (258)
T ss_pred             CccEEEECCcc
Confidence            68999999984

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.013  Score=48.05  Aligned_cols=74  Identities=19%  Similarity=0.359  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H---cCCC-EEE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S---LGAD-LAI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~---~g~~-~v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+|++|++|...++.+... |.+|+.++++.++.+.+. +   .+.. ..+  |..+.. ...       ..+.
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQ-GAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGR   85 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999999999999999988874 999999999877665442 2   2322 222  222211 111       1236


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|+++.+.|.
T Consensus        86 id~li~~ag~   95 (252)
T PRK07035         86 LDILVNNAAA   95 (252)
T ss_pred             CCEEEECCCc
Confidence            8999999884

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.012  Score=49.92  Aligned_cols=41  Identities=24%  Similarity=0.261  Sum_probs=34.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL  191 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~  191 (255)
                      .+++++|+||+|++|..+++.+... |.+++++.++.++.+.
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~-G~~vi~~~r~~~~~~~   55 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAK-GAHVVLAVRNLDKGKA   55 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence            5789999999999999988877774 8999999998776543

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.59  E-value=0.013  Score=48.61  Aligned_cols=74  Identities=19%  Similarity=0.286  Sum_probs=45.8

Q ss_pred             CCCEEEEEcC--CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCEEE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGG--AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADLAI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga--~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~v~--~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+||  ++++|.+.++.+.. .|++|++..+++...+.++    +.+....+  |-.+.+ ..+       ..+
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACRE-QGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHH-CCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            5789999996  56999998887776 4999998766543222232    23432222  222211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        84 ~iD~lVnnAG~   94 (261)
T PRK08690         84 GLDGLVHSIGF   94 (261)
T ss_pred             CCcEEEECCcc
Confidence            79999999984

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.59  E-value=0.0097  Score=53.48  Aligned_cols=74  Identities=27%  Similarity=0.383  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh--hhHHH-HHHcCCCE-EEcCCCccc-cc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST--AKLDL-LRSLGADL-AIDYTKENI-ED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~--~~~~~-~~~~g~~~-v~~~~~~~~-~~-------~~~~~d~  217 (255)
                      ++++++|+|++|++|...++.+.. .|+++++++++.  ++++. .++++... ..|..+... ..       ...++|+
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~-~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLAR-DGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHH-CCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            578999999999999999988887 499999988743  33332 34555432 234333221 11       1236899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|++.|.
T Consensus       288 vi~~AG~  294 (450)
T PRK08261        288 VVHNAGI  294 (450)
T ss_pred             EEECCCc
Confidence            9999984

>PRK08589 short chain dehydrogenase; Validated

Probab=96.58  E-value=0.013  Score=48.94  Aligned_cols=73  Identities=22%  Similarity=0.350  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH-HHH---cCCC-EE--EcCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL-LRS---LGAD-LA--IDYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~-~~~---~g~~-~v--~~~~~~~-~~~-------~~~~  214 (255)
                      .++++||+|+++++|...++.+.. .|++|++++++ ++.+. +++   .+.. ..  .|..+.. ...       ..+.
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~-~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQ-EGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR   82 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999998887777 49999999988 44332 332   2322 12  2322221 111       1246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|++.|.
T Consensus        83 id~li~~Ag~   92 (272)
T PRK08589         83 VDVLFNNAGV   92 (272)
T ss_pred             cCEEEECCCC
Confidence            8999999984

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.57  E-value=0.014  Score=48.79  Aligned_cols=73  Identities=25%  Similarity=0.471  Sum_probs=47.2

Q ss_pred             CCCCEEEEEcCCchHHHHHH-HHHHHhcCCcEEEEecChhhH----HHHHHcCCC--EEEcCCC-ccc-------cccCC
Q 025278          149 SAGKSILVLGGAGGVGTMVI-QLAKHVFGASKVAATSSTAKL----DLLRSLGAD--LAIDYTK-ENI-------EDLPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~-~~a~~~~g~~vi~~~~~~~~~----~~~~~~g~~--~v~~~~~-~~~-------~~~~~  213 (255)
                      -.|+.|||+||.+++|.+.+ ++|+.  |++++..|.+.+-.    +..++.|..  .+.|-.+ ++.       .+..+
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999998755 55553  88898998766533    233444522  2233322 111       12245


Q ss_pred             CccEEEECCC
Q 025278          214 KFDVVFDAVG  223 (255)
Q Consensus       214 ~~d~vid~~G  223 (255)
                      .+|+++|.+|
T Consensus       114 ~V~ILVNNAG  123 (300)
T KOG1201|consen  114 DVDILVNNAG  123 (300)
T ss_pred             CceEEEeccc
Confidence            7999999998

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.56  E-value=0.0098  Score=50.08  Aligned_cols=74  Identities=24%  Similarity=0.255  Sum_probs=47.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc----CCCEEEcCCCccccccCCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL----GADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~----g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      ..+++++|+| +|+.+.+++..+..++..+++++.|+.+|.+.+. ++    +...+......+.......+|+||||+.
T Consensus       125 ~~~k~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        125 AKLDSVVQVG-AGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             cCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence            3478999999 8999999888777753346778889988876653 33    2211111111111112346899999976

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.016  Score=47.37  Aligned_cols=74  Identities=26%  Similarity=0.333  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+|++|++|...+..+.. .|.+++++++++++.+..    ++.+... ++  |-.+.. ...       ..++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAE-AGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999888877 499999999888766543    2233222 22  322211 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.++|.
T Consensus        85 id~vi~~ag~   94 (250)
T PRK12939         85 LDGLVNNAGI   94 (250)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.55  E-value=0.017  Score=47.69  Aligned_cols=73  Identities=18%  Similarity=0.223  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCC--C-EE--EcCCCcc-ccc-------cCCCcc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGA--D-LA--IDYTKEN-IED-------LPEKFD  216 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~--~-~v--~~~~~~~-~~~-------~~~~~d  216 (255)
                      +++++|+|++|++|...+..+.. .|.+|+++++++++++.+. ++..  + ..  .|..+.+ ..+       ..+.+|
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id   80 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYAR-QGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD   80 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence            46899999999999998888877 4999999999888776543 2321  1 11  2222211 111       123589


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|+++|.
T Consensus        81 ~lv~~ag~   88 (257)
T PRK07024         81 VVIANAGI   88 (257)
T ss_pred             EEEECCCc
Confidence            99999884

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.54  E-value=0.012  Score=48.50  Aligned_cols=74  Identities=27%  Similarity=0.334  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH---cCCCE---EEcCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS---LGADL---AIDYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~---~g~~~---v~~~~~~~-~~~-------~~~~~  215 (255)
                      .+++++|+||+|++|...++.+.. .|.+|+++++++...+..++   .+.+.   ..|..+.. ...       ..+.+
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAA-EGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999998888777 49999999887543333332   34332   12332211 111       12478


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.++|.
T Consensus        86 d~lv~nAg~   94 (260)
T PRK12823         86 DVLINNVGG   94 (260)
T ss_pred             eEEEECCcc
Confidence            999999983

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.54  E-value=0.015  Score=48.53  Aligned_cols=74  Identities=22%  Similarity=0.372  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-H---HcCCC-EEE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-R---SLGAD-LAI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~---~~g~~-~v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+|++|++|...+..+.. .|.+|+++++++++.+.+ +   +.+.. ..+  |..+.. ...       ..+.
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   87 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELAR-AGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP   87 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998888877 499999999987665443 2   22322 122  222211 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.++|.
T Consensus        88 id~li~~ag~   97 (278)
T PRK08277         88 CDILINGAGG   97 (278)
T ss_pred             CCEEEECCCC
Confidence            8999999883

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.54  E-value=0.015  Score=47.96  Aligned_cols=74  Identities=26%  Similarity=0.306  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC--EEE--cCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD--LAI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~--~v~--~~~~~~-~~~-------~~~~~  215 (255)
                      .+++++|+||+  +++|.+.++.+.. .|++|++..++++..+.++++...  ..+  |-.+.. ..+       ..+.+
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   84 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKD-QGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKI   84 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHH-CCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999988  7999998888777 499999988875433444443211  122  222211 111       12468


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|++.|.
T Consensus        85 D~lv~nAg~   93 (252)
T PRK06079         85 DGIVHAIAY   93 (252)
T ss_pred             CEEEEcccc
Confidence            999999984

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.016  Score=47.59  Aligned_cols=74  Identities=30%  Similarity=0.447  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCC-EEE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGAD-LAI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~-~v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+|++|++|...+..+... |++|+++++++++.+.+    ++.+.. ..+  |..+.. ...       ..+.
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFARE-GAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4789999999999999988877774 89999999988765433    333432 222  222211 111       1236


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        85 id~li~~ag~   94 (253)
T PRK06172         85 LDYAFNNAGI   94 (253)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.52  E-value=0.017  Score=48.13  Aligned_cols=73  Identities=26%  Similarity=0.333  Sum_probs=49.6

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCC-EEE--cCCCcc-ccc-------cCCCccEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGAD-LAI--DYTKEN-IED-------LPEKFDVV  218 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~-~v~--~~~~~~-~~~-------~~~~~d~v  218 (255)
                      +++++|+||+|++|...+..+.. .|.+|++++++.++++.+.+ ++.. ..+  |..+.. ...       ...++|++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALE-RGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIV   81 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            56899999999999998888776 48999999998887765543 3321 222  222211 111       12478999


Q ss_pred             EECCCC
Q 025278          219 FDAVGK  224 (255)
Q Consensus       219 id~~G~  224 (255)
                      |.++|.
T Consensus        82 i~~ag~   87 (275)
T PRK08263         82 VNNAGY   87 (275)
T ss_pred             EECCCC
Confidence            999984

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.52  E-value=0.011  Score=49.77  Aligned_cols=71  Identities=21%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHH-HHcC----CCEEEcCCCccccccCCCccEEEECC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLL-RSLG----ADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~-~~~g----~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      ..+++|+|+| +|+.|.+++..+..+ |+ ++++++++.+|.+.+ ++++    ...+...  .+..+....+|+||+|+
T Consensus       125 ~~~k~vlIlG-aGGaaraia~aL~~~-G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~--~~~~~~~~~aDiVInaT  200 (284)
T PRK12549        125 ASLERVVQLG-AGGAGAAVAHALLTL-GVERLTIFDVDPARAAALADELNARFPAARATAG--SDLAAALAAADGLVHAT  200 (284)
T ss_pred             ccCCEEEEEC-CcHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEec--cchHhhhCCCCEEEECC
Confidence            3568999999 899999999888886 65 788889998887655 3332    1122211  11222235789999995


Q ss_pred             C
Q 025278          223 G  223 (255)
Q Consensus       223 G  223 (255)
                      .
T Consensus       201 p  201 (284)
T PRK12549        201 P  201 (284)
T ss_pred             c
Confidence            4

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.52  E-value=0.029  Score=46.91  Aligned_cols=71  Identities=18%  Similarity=0.312  Sum_probs=48.6

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHc---CCCEEEcCCCccccccCCCccEEEECCC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSL---GADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~---g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      ...+++++|+| +|++|.+++..+... |.+++++.++++|.+.+ +++   +........+    .....+|+||+|++
T Consensus       114 ~~~~k~vliiG-aGg~g~aia~~L~~~-g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~----~~~~~~DivInatp  187 (270)
T TIGR00507       114 LRPNQRVLIIG-AGGAARAVALPLLKA-DCNVIIANRTVSKAEELAERFQRYGEIQAFSMDE----LPLHRVDLIINATS  187 (270)
T ss_pred             CccCCEEEEEc-CcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhhcCceEEechhh----hcccCccEEEECCC
Confidence            34578999999 699999988887774 78888989988776544 333   2222222111    11246899999988


Q ss_pred             C
Q 025278          224 K  224 (255)
Q Consensus       224 ~  224 (255)
                      .
T Consensus       188 ~  188 (270)
T TIGR00507       188 A  188 (270)
T ss_pred             C
Confidence            4

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08017 oxidoreductase; Provisional

Probab=96.52  E-value=0.0081  Score=49.35  Aligned_cols=72  Identities=22%  Similarity=0.344  Sum_probs=52.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCcc-c----cc----cCCCccEEEEC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKEN-I----ED----LPEKFDVVFDA  221 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~-~----~~----~~~~~d~vid~  221 (255)
                      ++++|+|++|++|...++.+... |.+++++++++++.+.+++.+.+.+ .|..+.+ .    ..    ....+|.++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRR-GYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            57999999999999999998874 8999999999998888777775443 2332221 0    11    12468999998


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      .|.
T Consensus        82 ag~   84 (256)
T PRK08017         82 AGF   84 (256)
T ss_pred             CCC
Confidence            873

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.52  E-value=0.016  Score=47.75  Aligned_cols=41  Identities=17%  Similarity=0.237  Sum_probs=34.3

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      +++++|+|++|++|...+..+.. .|++++.++++.++.+..
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~-~g~~vi~~~r~~~~~~~~   42 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAE-EGYRVAVADINSEKAANV   42 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHH
Confidence            56899999999999998888877 499999999887765443

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.51  E-value=0.011  Score=48.76  Aligned_cols=75  Identities=19%  Similarity=0.234  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc--CCCEE-EcCCC--ccccccC-CCccEEEECC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL--GADLA-IDYTK--ENIEDLP-EKFDVVFDAV  222 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~--g~~~v-~~~~~--~~~~~~~-~~~d~vid~~  222 (255)
                      ..+++|+|+||+|.+|...+..+.. .|.+|+++.+++++.......  ++..+ .|..+  ..+.+.. .++|+||.++
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~   93 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT   93 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence            3467999999999999999888877 489999999988765433221  23222 23332  1222333 5899999998


Q ss_pred             CC
Q 025278          223 GK  224 (255)
Q Consensus       223 G~  224 (255)
                      |.
T Consensus        94 g~   95 (251)
T PLN00141         94 GF   95 (251)
T ss_pred             CC
Confidence            74

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.018  Score=47.07  Aligned_cols=73  Identities=21%  Similarity=0.305  Sum_probs=48.6

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----c--CCC-EE--EcCCCcc-cc-------ccCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----L--GAD-LA--IDYTKEN-IE-------DLPE  213 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~--g~~-~v--~~~~~~~-~~-------~~~~  213 (255)
                      +++++|+|++|++|...+..+... |.+++++++++++.+.+.+    .  +.. ++  .|..+.. ..       +..+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAK-GRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999888777764 8999999998887665421    1  211 12  2332221 11       1124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|.+.|.
T Consensus        81 ~id~vi~~ag~   91 (248)
T PRK08251         81 GLDRVIVNAGI   91 (248)
T ss_pred             CCCEEEECCCc
Confidence            78999999883

>PLN02253 xanthoxin dehydrogenase

Probab=96.50  E-value=0.015  Score=48.51  Aligned_cols=74  Identities=27%  Similarity=0.386  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCC--C-EE--EcCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGA--D-LA--IDYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~--~-~v--~~~~~~~-~~~-------~~~~~  215 (255)
                      .+++++|+|++|++|...++.+.. .|++|+++++++++.+.+ ++++.  . ..  .|-.+.. ..+       ..+++
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i   95 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHK-HGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL   95 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            478999999999999998887776 499999998877655433 33321  1 12  2222211 111       12468


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|++.|.
T Consensus        96 d~li~~Ag~  104 (280)
T PLN02253         96 DIMVNNAGL  104 (280)
T ss_pred             CEEEECCCc
Confidence            999999984

>PRK08264 short chain dehydrogenase; Validated

Probab=96.50  E-value=0.014  Score=47.42  Aligned_cols=71  Identities=23%  Similarity=0.390  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCC-EEE--cCCCc-cccc---cCCCccEEEEC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGAD-LAI--DYTKE-NIED---LPEKFDVVFDA  221 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~-~v~--~~~~~-~~~~---~~~~~d~vid~  221 (255)
                      .+++++|+||+|++|...++.+... |. +|++++++.++.+.   .+.. .++  |..+. .+.+   ..+.+|++|.+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~-G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   80 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLAR-GAAKVYAAARDPESVTD---LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNN   80 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CcccEEEEecChhhhhh---cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence            4678999999999999998888874 88 99999988776543   2221 122  22221 1111   12358999999


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      .|.
T Consensus        81 ag~   83 (238)
T PRK08264         81 AGI   83 (238)
T ss_pred             CCc
Confidence            986

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.50  E-value=0.018  Score=45.89  Aligned_cols=68  Identities=22%  Similarity=0.219  Sum_probs=48.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      -.|++++|+| .|.+|..+++.+... |++|++.++++++.+.++ .+|+. .++..+  +.  ...+|+++-|+.
T Consensus        26 l~gk~v~I~G-~G~vG~~~A~~L~~~-G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~--l~--~~~~Dv~vp~A~   94 (200)
T cd01075          26 LEGKTVAVQG-LGKVGYKLAEHLLEE-GAKLIVADINEEAVARAAELFGAT-VVAPEE--IY--SVDADVFAPCAL   94 (200)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHcCCE-EEcchh--hc--cccCCEEEeccc
Confidence            4678999999 899999999999985 999999999988877664 45654 333211  11  124677775544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.50  E-value=0.019  Score=46.64  Aligned_cols=73  Identities=16%  Similarity=0.240  Sum_probs=48.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH-HHHHHcCCCEE-EcCCCcc-cc-------ccCCCccEEEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL-DLLRSLGADLA-IDYTKEN-IE-------DLPEKFDVVFD  220 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~-~~~~~~g~~~v-~~~~~~~-~~-------~~~~~~d~vid  220 (255)
                      +++++|+|+++++|...++.+.. .|++|+++++++++. +.+++.+...+ .|..+.. ..       +..+++|++|+
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~   80 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLA-QGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIH   80 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHH-CCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence            46899999999999998888777 499999998876543 33445554321 2222211 11       11246899999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      +.|.
T Consensus        81 ~ag~   84 (236)
T PRK06483         81 NASD   84 (236)
T ss_pred             CCcc
Confidence            9884

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.016  Score=47.81  Aligned_cols=73  Identities=29%  Similarity=0.425  Sum_probs=50.0

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcC-CC-EE--EcCCCcc-ccc----c----CCCccE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLG-AD-LA--IDYTKEN-IED----L----PEKFDV  217 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g-~~-~v--~~~~~~~-~~~----~----~~~~d~  217 (255)
                      ++++|+||+|++|...++.+... |.+|++++++.++.+.+. .++ .. ++  .|-.+.+ ..+    .    .+.+|+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~   80 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAE-GWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV   80 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence            57999999999999998877774 999999999988876654 332 11 12  2333221 111    1    346899


Q ss_pred             EEECCCCc
Q 025278          218 VFDAVGKM  225 (255)
Q Consensus       218 vid~~G~~  225 (255)
                      +|.++|..
T Consensus        81 vi~~ag~~   88 (260)
T PRK08267         81 LFNNAGIL   88 (260)
T ss_pred             EEECCCCC
Confidence            99999843

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.48  E-value=0.017  Score=47.24  Aligned_cols=74  Identities=24%  Similarity=0.386  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc--CCC-EEE--cCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL--GAD-LAI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~--g~~-~v~--~~~~~~-~~~-------~~~~~  215 (255)
                      .+++++|+|++|++|...++.+.. .|++++++.++.++.+... ++  +.. ..+  |..+.. ..+       ..+++
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   82 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAR-EGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL   82 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHH-CCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            467999999999999998887777 4899999998877655432 22  322 222  222211 111       12478


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.+.|.
T Consensus        83 d~vi~~ag~   91 (252)
T PRK06138         83 DVLVNNAGF   91 (252)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.48  E-value=0.02  Score=47.17  Aligned_cols=74  Identities=22%  Similarity=0.336  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE-E--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA-I--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v-~--~~~~~~-~~~-------~~~~  214 (255)
                      .++++||+|++|.+|..++..+.. .|.+|+++++++++.+.+    ++.+.+.. +  |..+.. ..+       ..+.
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELAR-AGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS   84 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998888877 499999999988665433    33443322 2  222211 111       1235


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.++|.
T Consensus        85 ~d~vi~~ag~   94 (262)
T PRK13394         85 VDILVSNAGI   94 (262)
T ss_pred             CCEEEECCcc
Confidence            8999999984

>PRK06720 hypothetical protein; Provisional

Probab=96.48  E-value=0.027  Score=43.66  Aligned_cols=74  Identities=24%  Similarity=0.373  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-H---HcCCCE-EEcCCCcccc---c-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-R---SLGADL-AIDYTKENIE---D-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~---~~g~~~-v~~~~~~~~~---~-------~~~~  214 (255)
                      .++.++|+||++++|...+..+.. .|.++++++++.++.+.+ +   +.+... .+..+-.+..   +       ..+.
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~-~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~   93 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAK-QGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR   93 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999998887776 489999999877655432 2   234332 2322222211   1       1246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        94 iDilVnnAG~  103 (169)
T PRK06720         94 IDMLFQNAGL  103 (169)
T ss_pred             CCEEEECCCc
Confidence            8999999884

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.016  Score=48.46  Aligned_cols=74  Identities=22%  Similarity=0.249  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCC--C-EEE--cCCCcc-cc---c---cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGA--D-LAI--DYTKEN-IE---D---LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~--~-~v~--~~~~~~-~~---~---~~~  213 (255)
                      .+++++|+||+|++|...+..+.. .|++|+++++++++.+...    +.+.  . ..+  |..+.. ..   +   ..+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~   80 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAK-KGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG   80 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence            357899999999999999988877 4999999998887665442    2221  1 122  332221 11   1   124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|.+.|.
T Consensus        81 ~id~vv~~ag~   91 (280)
T PRK06914         81 RIDLLVNNAGY   91 (280)
T ss_pred             CeeEEEECCcc
Confidence            68999999884

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.015  Score=48.42  Aligned_cols=72  Identities=25%  Similarity=0.347  Sum_probs=48.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE----EEcCCCccc-c-------ccCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL----AIDYTKENI-E-------DLPEKF  215 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~----v~~~~~~~~-~-------~~~~~~  215 (255)
                      ++++|+||+|++|..+++.+.. .|++|+++++++++++.+    +..+...    ..|..+... .       +..+++
T Consensus         1 k~vlItGas~giG~~la~~la~-~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAA-QGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            3689999999999999888877 489999999887765443    2234321    133332211 0       112468


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|+++|.
T Consensus        80 d~lv~~ag~   88 (272)
T PRK07832         80 DVVMNIAGI   88 (272)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK14967 putative methyltransferase; Provisional

Probab=96.47  E-value=0.045  Score=44.32  Aligned_cols=76  Identities=22%  Similarity=0.197  Sum_probs=49.8

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC-EEEcCCCccccccCCCccE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD-LAIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~~d~  217 (255)
                      +....++++++||-.| +|. |..+..+++. +..++++++.+++.++.+++    .+.. .+++.+-.+. ...+.+|+
T Consensus        29 l~~~~~~~~~~vLDlG-cG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~  104 (223)
T PRK14967         29 LAAEGLGPGRRVLDLC-TGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDV  104 (223)
T ss_pred             HHhcccCCCCeEEEec-CCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeE
Confidence            4455678889999999 666 8888888875 34589999999988876643    3432 2233221111 11347999


Q ss_pred             EEECC
Q 025278          218 VFDAV  222 (255)
Q Consensus       218 vid~~  222 (255)
                      |+-..
T Consensus       105 Vi~np  109 (223)
T PRK14967        105 VVSNP  109 (223)
T ss_pred             EEECC
Confidence            99753

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.014  Score=48.30  Aligned_cols=73  Identities=22%  Similarity=0.380  Sum_probs=48.3

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~~~  215 (255)
                      +++++|+|++|++|..+++.+.. .|.+|+++++++++.+.+    +..+... ++  |..+.. ...       ...++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~-~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLAR-AGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI   79 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            35799999999999999988877 489999999987665433    2234322 12  222211 111       12368


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.++|.
T Consensus        80 d~vi~~ag~   88 (263)
T PRK06181         80 DILVNNAGI   88 (263)
T ss_pred             CEEEECCCc
Confidence            999999884

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=96.46  E-value=0.011  Score=49.51  Aligned_cols=77  Identities=31%  Similarity=0.470  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCC------EEEcCCCcc-ccc-------
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGAD------LAIDYTKEN-IED-------  210 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~------~v~~~~~~~-~~~-------  210 (255)
                      -.|+.++|+|++.++|.+.+..+... |++|++..+++++.+..+    ..+..      .+.|..++. ..+       
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~-Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~   84 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKA-GAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE   84 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence            46889999999999998877777664 999999999998876543    22221      122322221 111       


Q ss_pred             c-CCCccEEEECCCCcc
Q 025278          211 L-PEKFDVVFDAVGKMC  226 (255)
Q Consensus       211 ~-~~~~d~vid~~G~~~  226 (255)
                      . .+++|+.+++.|...
T Consensus        85 ~~~GkidiLvnnag~~~  101 (270)
T KOG0725|consen   85 KFFGKIDILVNNAGALG  101 (270)
T ss_pred             HhCCCCCEEEEcCCcCC
Confidence            1 357999999999443

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.46  E-value=0.017  Score=47.68  Aligned_cols=74  Identities=30%  Similarity=0.462  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCC-EE--EcCCCcc-cc-------ccCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGAD-LA--IDYTKEN-IE-------DLPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~-~v--~~~~~~~-~~-------~~~~~  214 (255)
                      .+++++|+|++|++|...++.+.. .|++|++++++.++++.+.    +.+.. ..  .|..+.. ..       +....
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGE-AGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            468999999999999999888887 4999999999887765543    22322 12  2322211 11       11246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.++|.
T Consensus        90 id~vi~~ag~   99 (259)
T PRK08213         90 VDILVNNAGA   99 (259)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.46  E-value=0.018  Score=48.18  Aligned_cols=75  Identities=25%  Similarity=0.246  Sum_probs=47.5

Q ss_pred             CCCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecCh---hhHHHH-HHcCCCEEEcCCCccccc----------cC
Q 025278          149 SAGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSST---AKLDLL-RSLGADLAIDYTKENIED----------LP  212 (255)
Q Consensus       149 ~~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~---~~~~~~-~~~g~~~v~~~~~~~~~~----------~~  212 (255)
                      -.+++++|+|++  +++|.+.+..+.. .|++|+++.+++   ++++.+ ++++....+..+-.+..+          ..
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~-~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   86 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRA-AGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW   86 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHH-CCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence            357899999986  7999998887777 499998877653   333333 344532222222111111          12


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +.+|++|++.|.
T Consensus        87 g~iD~lv~nAG~   98 (272)
T PRK08159         87 GKLDFVVHAIGF   98 (272)
T ss_pred             CCCcEEEECCcc
Confidence            468999999984

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.45  E-value=0.019  Score=47.19  Aligned_cols=74  Identities=26%  Similarity=0.413  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HH---cCCCE-EE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RS---LGADL-AI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~---~g~~~-v~--~~~~~~-~~~-------~~~~  214 (255)
                      .++++||+||+|++|...++.+.. .|++++++++++++.+.+ ++   .+... .+  |-.+.+ ..+       ..+.
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~-~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   86 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAE-YGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP   86 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999998888877 499999999987765543 22   23221 22  222211 111       1246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        87 id~vi~~ag~   96 (254)
T PRK08085         87 IDVLINNAGI   96 (254)
T ss_pred             CCEEEECCCc
Confidence            8999999984

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.02  Score=47.76  Aligned_cols=72  Identities=22%  Similarity=0.329  Sum_probs=49.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCC-EE--EcCCCcc-ccc-------cCCCccEEE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGAD-LA--IDYTKEN-IED-------LPEKFDVVF  219 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~-~v--~~~~~~~-~~~-------~~~~~d~vi  219 (255)
                      +++||+||+|++|...++.+.. .|.+|+++.+++++++.+++ .+.. .+  .|..+.. ..+       ...++|++|
T Consensus         3 k~vlVtGasg~IG~~la~~L~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   81 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLA-RGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVV   81 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5799999999999998887777 48999999999887776643 2322 11  2222221 111       124689999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .++|.
T Consensus        82 ~~ag~   86 (276)
T PRK06482         82 SNAGY   86 (276)
T ss_pred             ECCCC
Confidence            99984

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.014  Score=48.01  Aligned_cols=75  Identities=27%  Similarity=0.390  Sum_probs=50.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHH----HHHcCCCE---EEcCCCcc-cccc-------C
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDL----LRSLGADL---AIDYTKEN-IEDL-------P  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~----~~~~g~~~---v~~~~~~~-~~~~-------~  212 (255)
                      ..+++++|+|++|++|...++.+.. .|++ |+++++++++.+.    +++.+...   ..|..+.+ ..+.       .
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~-~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAE-RGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF   82 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHH-CCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3568999999999999999888887 4888 8888887765542    23334332   12333221 1111       1


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|++.|.
T Consensus        83 g~id~li~~ag~   94 (260)
T PRK06198         83 GRLDALVNAAGL   94 (260)
T ss_pred             CCCCEEEECCCc
Confidence            368999999984

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.44  E-value=0.019  Score=45.25  Aligned_cols=95  Identities=23%  Similarity=0.235  Sum_probs=59.9

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE--EEcCCCccccccCCCccEEEEC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL--AIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~--v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      ++++.+|+-.| +| .|..+..+++...+.+++.++.+++..+.++    +.+.+.  ++..+..+... .+.+|+|+-.
T Consensus        43 l~~g~~VLDiG-cG-tG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~  119 (187)
T PRK00107         43 LPGGERVLDVG-SG-AGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR  119 (187)
T ss_pred             cCCCCeEEEEc-CC-CCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence            44588999998 44 3777777776556789999999998776664    345432  22222222222 3479999954


Q ss_pred             CCC--ccceeeeeeccccCCceEEEEe
Q 025278          222 VGK--MCISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       222 ~G~--~~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      .-.  ......+.+.++ ++|+++.+=
T Consensus       120 ~~~~~~~~l~~~~~~Lk-pGG~lv~~~  145 (187)
T PRK00107        120 AVASLSDLVELCLPLLK-PGGRFLALK  145 (187)
T ss_pred             cccCHHHHHHHHHHhcC-CCeEEEEEe
Confidence            321  233334466777 899988773

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.013  Score=48.76  Aligned_cols=41  Identities=27%  Similarity=0.350  Sum_probs=34.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL  191 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~  191 (255)
                      .+++++|+|++|++|...++.+.. .|.+|+++.+++++.+.
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~-~G~~V~~~~r~~~~~~~   46 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVA-AGAAVMIVGRNPDKLAA   46 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCeEEEEeCCHHHHHH
Confidence            468999999999999999998887 49999999988776543

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.43  E-value=0.018  Score=47.45  Aligned_cols=74  Identities=20%  Similarity=0.326  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh--HHHHHHcCCCE-E--EcCCCcc-ccc-------cCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK--LDLLRSLGADL-A--IDYTKEN-IED-------LPEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~--~~~~~~~g~~~-v--~~~~~~~-~~~-------~~~~~d  216 (255)
                      .+++++|+||++++|.+.++.+.. .|++|+++.+++..  .+..++.+.+. .  .|-.+.. ..+       ..+++|
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~-~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD   85 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAK-AGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHID   85 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999998888877 49999988775422  22334455332 1  2332221 111       124689


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      +++++.|.
T Consensus        86 ~lv~~ag~   93 (251)
T PRK12481         86 ILINNAGI   93 (251)
T ss_pred             EEEECCCc
Confidence            99999883

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.42  E-value=0.027  Score=43.59  Aligned_cols=54  Identities=28%  Similarity=0.324  Sum_probs=36.7

Q ss_pred             ccchhHHHHHHHHHh-cccCCCCEEEEEcCCch-HHHHHHHHHHHhcCCcEEEEecCh
Q 025278          131 SLPLATETAYEGLER-SAFSAGKSILVLGGAGG-VGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~-~~~~~g~~VlI~ga~g~-~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      ..|+....+...++. ..--.+++|+|+| +|. +|..++..++.. |+++.++.++.
T Consensus        23 ~~p~~~~a~v~l~~~~~~~l~gk~vlViG-~G~~~G~~~a~~L~~~-g~~V~v~~r~~   78 (168)
T cd01080          23 FIPCTPAGILELLKRYGIDLAGKKVVVVG-RSNIVGKPLAALLLNR-NATVTVCHSKT   78 (168)
T ss_pred             ccCChHHHHHHHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHhhC-CCEEEEEECCc
Confidence            345444344444433 2346789999999 676 599888888874 88888888764

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06484 short chain dehydrogenase; Validated

Probab=96.41  E-value=0.018  Score=52.63  Aligned_cols=74  Identities=23%  Similarity=0.354  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCE-E--EcCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADL-A--IDYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~-v--~~~~~~~-~~~-------~~~~~d~  217 (255)
                      .|++++|+||++++|...++.+.. .|++|+++++++++++.+. +++... .  .|..+.. ...       ..+.+|+
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~  346 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAA-AGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDV  346 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            578999999999999998887777 4899999999888877664 455332 1  2332221 111       1246899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus       347 li~nAg~  353 (520)
T PRK06484        347 LVNNAGI  353 (520)
T ss_pred             EEECCCC
Confidence            9999984

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.0095  Score=49.48  Aligned_cols=72  Identities=21%  Similarity=0.390  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE-EEcCCCcc-ccc-------cCCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL-AIDYTKEN-IED-------LPEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~-v~~~~~~~-~~~-------~~~~~d~vid  220 (255)
                      .+++++|+||+|++|...++.+.. .|.+|++++++.++.+...  +... ..|..+.. ..+       ..+.+|++|+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~-~g~~V~~~~r~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~   79 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLAR-AGYRVFGTSRNPARAAPIP--GVELLELDVTDDASVQAAVDEVIARAGRIDVLVN   79 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHH-CCCEEEEEeCChhhccccC--CCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            356899999999999998888777 4999999999876554221  2221 12332221 111       1246899999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      +.|.
T Consensus        80 ~ag~   83 (270)
T PRK06179         80 NAGV   83 (270)
T ss_pred             CCCC
Confidence            9984

>PRK09242 tropinone reductase; Provisional

Probab=96.40  E-value=0.023  Score=46.81  Aligned_cols=74  Identities=19%  Similarity=0.402  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc-----CCCE-EE--cCCCcc--------ccccC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL-----GADL-AI--DYTKEN--------IEDLP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~-----g~~~-v~--~~~~~~--------~~~~~  212 (255)
                      .+++++|+|++|++|...+..+.. .|.+++++++++++.+.+. ++     +.+. .+  |..+.+        ..+..
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~-~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLG-LGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            478999999999999998888887 4999999999887765442 22     2221 12  222211        11113


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|.+.|.
T Consensus        87 g~id~li~~ag~   98 (257)
T PRK09242         87 DGLHILVNNAGG   98 (257)
T ss_pred             CCCCEEEECCCC
Confidence            478999999985

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.38  E-value=0.023  Score=46.76  Aligned_cols=74  Identities=20%  Similarity=0.265  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-hHHH----HHHcCCCE-EE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-KLDL----LRSLGADL-AI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-~~~~----~~~~g~~~-v~--~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+|+++++|...++.+.. .|+++++++++++ +.+.    +++.+... .+  |-.+.+ ..+       ..+
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~-~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   85 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQ-AGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELG   85 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999999988887 4999999987653 2222    23334221 22  222211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|++.|.
T Consensus        86 ~id~li~~ag~   96 (254)
T PRK06114         86 ALTLAVNAAGI   96 (254)
T ss_pred             CCCEEEECCCC
Confidence            68999999984

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.37  E-value=0.023  Score=46.38  Aligned_cols=74  Identities=19%  Similarity=0.269  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCC-EEEcCCCcccc---c-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGAD-LAIDYTKENIE---D-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~-~v~~~~~~~~~---~-------~~~~  214 (255)
                      +++++||+||+|.+|...+..+.. .|.+|+.++++.++.+.+.    +.+.. ..+..+-.+..   +       ...+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAE-EGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            468899999999999999888877 4899999998877655442    22322 22222211111   1       1236


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        81 ~d~vi~~ag~   90 (250)
T TIGR03206        81 VDVLVNNAGW   90 (250)
T ss_pred             CCEEEECCCC
Confidence            8999999983

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.36  E-value=0.012  Score=44.99  Aligned_cols=75  Identities=17%  Similarity=0.304  Sum_probs=45.6

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC--hhhHHHH----HHcCCCE-EEcCCCccccc----------cCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS--TAKLDLL----RSLGADL-AIDYTKENIED----------LPEK  214 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~--~~~~~~~----~~~g~~~-v~~~~~~~~~~----------~~~~  214 (255)
                      ++++|+||++++|...++.+...++.+++.+.++  .++.+.+    ++.+... ++..+-.+..+          ....
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4799999999999998777776434466677777  4444433    3345322 22221111111          1247


Q ss_pred             ccEEEECCCCcc
Q 025278          215 FDVVFDAVGKMC  226 (255)
Q Consensus       215 ~d~vid~~G~~~  226 (255)
                      +|++|.+.|...
T Consensus        81 ld~li~~ag~~~   92 (167)
T PF00106_consen   81 LDILINNAGIFS   92 (167)
T ss_dssp             ESEEEEECSCTT
T ss_pred             cccccccccccc
Confidence            999999999443

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=96.34  E-value=0.026  Score=47.51  Aligned_cols=148  Identities=20%  Similarity=0.227  Sum_probs=84.8

Q ss_pred             CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH--hcccCCCCEEEEEcC
Q 025278           82 FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE--RSAFSAGKSILVLGG  159 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~--~~~~~~g~~VlI~ga  159 (255)
                      .+.|+|.+..+            +|.+|..-....++++.+++.+-    ......|.+ +++  ....++|++|+=.| 
T Consensus       109 ~rig~~f~I~P------------sw~~~~~~~~~~~i~lDPGlAFG----TG~HpTT~l-cL~~Le~~~~~g~~vlDvG-  170 (300)
T COG2264         109 VRIGERFVIVP------------SWREYPEPSDELNIELDPGLAFG----TGTHPTTSL-CLEALEKLLKKGKTVLDVG-  170 (300)
T ss_pred             EEeeeeEEECC------------CCccCCCCCCceEEEEccccccC----CCCChhHHH-HHHHHHHhhcCCCEEEEec-
Confidence            66788887765            35544322245667777776442    222222222 332  23356999999998 


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCEEEcCCCccccc--cCCCccEEEECCCCccce---ee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADLAIDYTKENIED--LPEKFDVVFDAVGKMCIS---IV  230 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~--~~~~~d~vid~~G~~~~~---~~  230 (255)
                      +| .|.+++..++. +..+++++|.++-..+.+++    .+.+........+...  ..+.+|+|+-..=..-..   ..
T Consensus       171 cG-SGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl~~La~~  248 (300)
T COG2264         171 CG-SGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEVLVELAPD  248 (300)
T ss_pred             CC-hhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHHHHHHHHHH
Confidence            54 49999988886 56779999998876666543    3333111111111111  124799999664221111   12


Q ss_pred             eeeccccCCceEEEEeeccC
Q 025278          231 YQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       231 ~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ....++ ++|++++-|....
T Consensus       249 ~~~~lk-pgg~lIlSGIl~~  267 (300)
T COG2264         249 IKRLLK-PGGRLILSGILED  267 (300)
T ss_pred             HHHHcC-CCceEEEEeehHh
Confidence            244455 7899999997654

>PRK06484 short chain dehydrogenase; Validated

Probab=96.34  E-value=0.017  Score=52.86  Aligned_cols=74  Identities=30%  Similarity=0.440  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE---EEcCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL---AIDYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~---v~~~~~~~-~~~-------~~~~~d~  217 (255)
                      .+++++|+|+++++|...++.+... |++|++++++.++++.+ ++++...   ..|..+.. ...       ..+++|+
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARA-GDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            5789999999999999988888774 99999999988887655 4565432   23332221 111       1246999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|++.|.
T Consensus        83 li~nag~   89 (520)
T PRK06484         83 LVNNAGV   89 (520)
T ss_pred             EEECCCc
Confidence            9999885

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.33  E-value=0.026  Score=46.49  Aligned_cols=74  Identities=28%  Similarity=0.425  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCC-EEE--cCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGAD-LAI--DYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~-~v~--~~~~~~-~~~-------~~~~~d~  217 (255)
                      .+++++|+|++|++|...++.+.. .|.+|+.++++.++.+.+. +++.. ..+  |-.+.. ...       ..+.+|+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLA-EGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI   83 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999999999999888887 4999999999888766543 34322 112  221111 111       1246899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|.+.|.
T Consensus        84 li~~ag~   90 (257)
T PRK07067         84 LFNNAAL   90 (257)
T ss_pred             EEECCCc
Confidence            9999884

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.022  Score=45.88  Aligned_cols=73  Identities=26%  Similarity=0.447  Sum_probs=51.0

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE-EEcCCCcc-ccc----c-CCCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL-AIDYTKEN-IED----L-PEKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~-v~~~~~~~-~~~----~-~~~~d~vid~~G~  224 (255)
                      ++++|+|++|++|...++.+.. .|++++.+++++++.+.++..+... ..|-.+.+ ...    . ...+|++|.+.|.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRA-DGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHh-CCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            4799999999999998887766 4999999999888777766655432 22322221 111    1 1358999999885


Q ss_pred             c
Q 025278          225 M  225 (255)
Q Consensus       225 ~  225 (255)
                      .
T Consensus        81 ~   81 (222)
T PRK06953         81 Y   81 (222)
T ss_pred             c
Confidence            3

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.02  Score=46.24  Aligned_cols=70  Identities=20%  Similarity=0.385  Sum_probs=48.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE-EcCCCcc-ccc----cCCCccEEEECCC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA-IDYTKEN-IED----LPEKFDVVFDAVG  223 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v-~~~~~~~-~~~----~~~~~d~vid~~G  223 (255)
                      +++|+||+|++|...++.+.. .|.+++.+++++++++.+ ++++...+ .|..+.. ..+    ..+.+|++|++.|
T Consensus         2 ~vlItGas~giG~~ia~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRN-DGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCC
Confidence            589999999999998888877 499999999998887654 44554322 2332221 111    1236899999876

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.32  E-value=0.023  Score=53.88  Aligned_cols=74  Identities=28%  Similarity=0.406  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H----cCCC--EE--EcCCCcc-ccc-------cC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S----LGAD--LA--IDYTKEN-IED-------LP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~----~g~~--~v--~~~~~~~-~~~-------~~  212 (255)
                      .+++++|+|++|++|...++.+.. .|++|++++++.++.+.+. +    .+..  ..  .|-.+.. +.+       ..
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~-~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~  491 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAA-EGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY  491 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            478999999999999998888877 4999999999887765442 2    2321  11  2222211 111       12


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus       492 g~iDilV~nAG~  503 (676)
T TIGR02632       492 GGVDIVVNNAGI  503 (676)
T ss_pred             CCCcEEEECCCC
Confidence            479999999984

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.027  Score=46.52  Aligned_cols=74  Identities=20%  Similarity=0.323  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH---cCCCE-E--EcCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS---LGADL-A--IDYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~---~g~~~-v--~~~~~~~-~~~-------~~~~~  215 (255)
                      .+++++|+|++|++|...+..+.. .|.+|++++++++..+.+++   .+... .  .|..+.. ...       ..+.+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~-~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   83 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFAR-HGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI   83 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999998888887 49999999887754433322   23221 2  2222211 111       12468


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.+.|.
T Consensus        84 d~vi~~ag~   92 (263)
T PRK08226         84 DILVNNAGV   92 (263)
T ss_pred             CEEEECCCc
Confidence            999999983

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.29  E-value=0.0066  Score=49.14  Aligned_cols=92  Identities=28%  Similarity=0.349  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC--EEEcCCCcccccc---CCCccEEEEC--
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD--LAIDYTKENIEDL---PEKFDVVFDA--  221 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~---~~~~d~vid~--  221 (255)
                      -+|.+||=.| +|+ |+++..+|+.  |++|.++|.+++..+.++.....  .-+||.....++.   .+.||+|+..  
T Consensus        58 l~g~~vLDvG-CGg-G~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV  133 (243)
T COG2227          58 LPGLRVLDVG-CGG-GILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV  133 (243)
T ss_pred             CCCCeEEEec-CCc-cHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhH
Confidence            4788999888 555 7999999985  89999999999999888642211  1256665544443   3579999854  


Q ss_pred             ---CCCcc-ceeeeeeccccCCceEEEE
Q 025278          222 ---VGKMC-ISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       222 ---~G~~~-~~~~~~~~~~~~~G~~v~~  245 (255)
                         +-.+. ....|.++++ ++|.+.+-
T Consensus       134 lEHv~dp~~~~~~c~~lvk-P~G~lf~S  160 (243)
T COG2227         134 LEHVPDPESFLRACAKLVK-PGGILFLS  160 (243)
T ss_pred             HHccCCHHHHHHHHHHHcC-CCcEEEEe
Confidence               44443 3344577787 88877653

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.021  Score=46.88  Aligned_cols=38  Identities=26%  Similarity=0.464  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK  188 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~  188 (255)
                      .+++++|+||+|++|...++.+.. .|.+|+++++++++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~-~g~~v~~~~r~~~~   42 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLA-AGATVVVCGRRAPE   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCChhh
Confidence            578999999999999998888877 49999999988765

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.29  E-value=0.02  Score=49.32  Aligned_cols=96  Identities=18%  Similarity=0.216  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHH-HcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLR-SLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      -.+++|+|+||+|.+|..+++.+....+ .+++.+.++.+++..+. +++...+.     ++.+...+.|+|+-+++...
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~-----~l~~~l~~aDiVv~~ts~~~  227 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKIL-----SLEEALPEADIVVWVASMPK  227 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHH-----hHHHHHccCCEEEECCcCCc
Confidence            3678999999889999998888864234 57788888888776653 44321111     23334457899999998755


Q ss_pred             ceeeeeeccccCCceEEEEeeccC
Q 025278          227 ISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       227 ~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ....-...++ +.-.++-++.++.
T Consensus       228 ~~~I~~~~l~-~~~~viDiAvPRD  250 (340)
T PRK14982        228 GVEIDPETLK-KPCLMIDGGYPKN  250 (340)
T ss_pred             CCcCCHHHhC-CCeEEEEecCCCC
Confidence            4322223333 3345555666554

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.29  E-value=0.028  Score=46.05  Aligned_cols=72  Identities=25%  Similarity=0.387  Sum_probs=49.7

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCE-EE--cCCCcc-ccc-------cCCCccEEE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADL-AI--DYTKEN-IED-------LPEKFDVVF  219 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~-v~--~~~~~~-~~~-------~~~~~d~vi  219 (255)
                      ++++|+|++|++|...+..+.. .|.+|+++++++++++.+. .++... .+  |-.+.. ..+       ..+++|++|
T Consensus         1 ~~vlItGasg~iG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi   79 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQ-QGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLV   79 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3689999999999999888887 4999999999988776654 344332 12  222211 111       124799999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .++|.
T Consensus        80 ~~ag~   84 (248)
T PRK10538         80 NNAGL   84 (248)
T ss_pred             ECCCc
Confidence            99884

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.024  Score=48.28  Aligned_cols=35  Identities=29%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      .+++++|+||++++|.+.++.+.. .|++|++++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~-~G~~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGA-AGATVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEecc
Confidence            478999999999999998888877 49999998886

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.27  E-value=0.0041  Score=54.79  Aligned_cols=89  Identities=25%  Similarity=0.363  Sum_probs=54.7

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHH--cCCC---EEEcCCCcc-ccccCCCccEEEECCCCcc
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRS--LGAD---LAIDYTKEN-IEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~--~g~~---~v~~~~~~~-~~~~~~~~d~vid~~G~~~  226 (255)
                      |+|+|+ |.+|..+++.+...... ++++.+++.++.+.+.+  .+..   ..+|..+.+ ..+..++.|+||+|+|...
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~   79 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF   79 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch
Confidence            789996 99999999998875444 78899999999877653  2221   223433322 3344568899999999765


Q ss_pred             ceeeeeeccccCCceEEE
Q 025278          227 ISIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       227 ~~~~~~~~~~~~~G~~v~  244 (255)
                      ....+..+++ .+-.++.
T Consensus        80 ~~~v~~~~i~-~g~~yvD   96 (386)
T PF03435_consen   80 GEPVARACIE-AGVHYVD   96 (386)
T ss_dssp             HHHHHHHHHH-HT-EEEE
T ss_pred             hHHHHHHHHH-hCCCeec
Confidence            4444444443 2334444

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.029  Score=46.14  Aligned_cols=73  Identities=23%  Similarity=0.339  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCC--CEEEcCCCcccccc----------CCCccE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGA--DLAIDYTKENIEDL----------PEKFDV  217 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~--~~v~~~~~~~~~~~----------~~~~d~  217 (255)
                      +++++|+|++|++|...+..+.. .|.++++++++.++.+.+. ++..  -..+..+-.+..+.          .+++|+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   80 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLA-AGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV   80 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999998888777 4899999999887765543 3321  11222221111111          136899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|.+.|.
T Consensus        81 vi~~ag~   87 (257)
T PRK07074         81 LVANAGA   87 (257)
T ss_pred             EEECCCC
Confidence            9999984

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=96.25  E-value=0.0048  Score=51.68  Aligned_cols=67  Identities=22%  Similarity=0.213  Sum_probs=46.0

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      |||+||+|-+|...++.+.. .|.+|+++++++++.......+   +.+.......+...++|+||.+++.
T Consensus         1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~D~Vvh~a~~   67 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTK-DGHEVTILTRSPPAGANTKWEG---YKPWAPLAESEALEGADAVINLAGE   67 (292)
T ss_pred             CEEEcccchhhHHHHHHHHH-cCCEEEEEeCCCCCCCccccee---eecccccchhhhcCCCCEEEECCCC
Confidence            68999999999999988877 4899999999876654322122   1111112222334589999999984

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.25  E-value=0.03  Score=45.95  Aligned_cols=74  Identities=26%  Similarity=0.323  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE-EE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL-AI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~-v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+|++|.+|...++.+.. .|.+|+++++++++.+.+.    +.+... .+  |..+.. ..+       ..++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   81 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAK-EGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGG   81 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            467999999999999998888877 4999999999887765442    223221 22  222211 111       1246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.++|.
T Consensus        82 ~d~vi~~a~~   91 (258)
T PRK12429         82 VDILVNNAGI   91 (258)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.23  E-value=0.0051  Score=43.50  Aligned_cols=87  Identities=22%  Similarity=0.249  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++|||.| .|.+|..-++.+... |++++++....   +..+  +.-....   ..+.+...++|+||-+++.+....
T Consensus         6 ~~~~vlVvG-gG~va~~k~~~Ll~~-gA~v~vis~~~---~~~~--~~i~~~~---~~~~~~l~~~~lV~~at~d~~~n~   75 (103)
T PF13241_consen    6 KGKRVLVVG-GGPVAARKARLLLEA-GAKVTVISPEI---EFSE--GLIQLIR---REFEEDLDGADLVFAATDDPELNE   75 (103)
T ss_dssp             TT-EEEEEE-ESHHHHHHHHHHCCC-TBEEEEEESSE---HHHH--TSCEEEE---SS-GGGCTTESEEEE-SS-HHHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEECCch---hhhh--hHHHHHh---hhHHHHHhhheEEEecCCCHHHHH
Confidence            578999999 799999988888884 89999998875   2222  2111221   223344678999999999877666


Q ss_pred             eeeeccccCCceEEEEee
Q 025278          230 VYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       230 ~~~~~~~~~~G~~v~~G~  247 (255)
                      ...+..+ ..|.++.+.-
T Consensus        76 ~i~~~a~-~~~i~vn~~D   92 (103)
T PF13241_consen   76 AIYADAR-ARGILVNVVD   92 (103)
T ss_dssp             HHHHHHH-HTTSEEEETT
T ss_pred             HHHHHHh-hCCEEEEECC
Confidence            5555555 4577776543

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.22  E-value=0.03  Score=45.38  Aligned_cols=74  Identities=24%  Similarity=0.375  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE---EcCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA---IDYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v---~~~~~~~-~~~-------~~~~  214 (255)
                      ++++++|+|++|++|...+..+.. .|.+|+++.+++++.+..    ++.+....   .|..+.. ..+       ....
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAA-DGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA   82 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            457899999999999999988877 499999999988775543    33343322   2322221 111       1235


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|.+|.++|.
T Consensus        83 id~vi~~ag~   92 (246)
T PRK05653         83 LDILVNNAGI   92 (246)
T ss_pred             CCEEEECCCc
Confidence            7999999984

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.20  E-value=0.032  Score=45.87  Aligned_cols=74  Identities=24%  Similarity=0.408  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCC-EE--EcCCCcc-cc-------ccCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGAD-LA--IDYTKEN-IE-------DLPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~-~~-------~~~~~  214 (255)
                      .+++++|+|+++++|...+..+.. .|.++++++++.++.+.+    ++.+.+ ..  .|..+.. ..       +....
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~-~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   88 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFAT-AGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK   88 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998888777 499999998887765543    223322 12  2322221 11       11246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        89 ~d~li~~ag~   98 (255)
T PRK06113         89 VDILVNNAGG   98 (255)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.19  E-value=0.033  Score=46.31  Aligned_cols=36  Identities=28%  Similarity=0.285  Sum_probs=29.1

Q ss_pred             CCCEEEEEcCCc--hHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          150 AGKSILVLGGAG--GVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       150 ~g~~VlI~ga~g--~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .+++++|+||++  ++|.+.++.+.. .|++|++..+++
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~-~G~~vil~~r~~   42 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHR-EGAELAFTYQND   42 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHH-CCCEEEEEecch
Confidence            578999999875  899987777776 489998887763

>PRK06398 aldose dehydrogenase; Validated

Probab=96.19  E-value=0.017  Score=47.68  Aligned_cols=69  Identities=19%  Similarity=0.383  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC-EEEcCCCcc-ccc-------cCCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD-LAIDYTKEN-IED-------LPEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~-~v~~~~~~~-~~~-------~~~~~d~vid  220 (255)
                      .|++++|+|+++++|...+..+.. .|++|+++++++++..     ... ...|-.+.. ..+       ..+.+|++|+
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~-~G~~Vi~~~r~~~~~~-----~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~   78 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKE-EGSNVINFDIKEPSYN-----DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN   78 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCeEEEEeCCccccC-----ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            468999999999999998888877 4999999988765432     111 112322221 111       1246899999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      +.|.
T Consensus        79 ~Ag~   82 (258)
T PRK06398         79 NAGI   82 (258)
T ss_pred             CCCC
Confidence            9884

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.18  E-value=0.036  Score=45.60  Aligned_cols=74  Identities=23%  Similarity=0.317  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC-hhhHHHHHHcCCCEE-EcCCCcc-ccc-------cCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS-TAKLDLLRSLGADLA-IDYTKEN-IED-------LPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~-~~~~~~~~~~g~~~v-~~~~~~~-~~~-------~~~~~d~vi  219 (255)
                      .+++++|+|++|++|...++.+.. .|.+|+++.++ +++.+.+++.+...+ .|-.+.. ..+       ..+++|++|
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~-~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLR-EGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999999999999998888877 48998877654 444444444343221 2322221 111       124689999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .+.|.
T Consensus        85 ~~ag~   89 (255)
T PRK06463         85 NNAGI   89 (255)
T ss_pred             ECCCc
Confidence            99984

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.038  Score=46.48  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      -.+++++|+||++++|...++.+... |+++++++++.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~-G~~vii~~~~~   40 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAE-GARVVVNDIGV   40 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEeeCCc
Confidence            46789999999999999988877764 99999887654

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.18  E-value=0.035  Score=45.08  Aligned_cols=74  Identities=18%  Similarity=0.296  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EEcCCCccccc----------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AIDYTKENIED----------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~~~~~~~~~~----------~~~~  214 (255)
                      .+++++|+|++|++|...+..+.. .|.+|+++++++++.+..    +..+... ++..+-.+..+          ..++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAK-EGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            357899999999999998887776 489999999987765543    2223222 22222111111          1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        85 id~vi~~ag~   94 (239)
T PRK07666         85 IDILINNAGI   94 (239)
T ss_pred             ccEEEEcCcc
Confidence            8999999884

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.18  E-value=0.039  Score=45.33  Aligned_cols=74  Identities=27%  Similarity=0.426  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCC-EEE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGAD-LAI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~-~v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+|++|++|...+..+.. .|++++++++++++++.+    ++.+.. ..+  |..+.. ...       ..+.
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAG-AGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999998887776 499999999987765443    233422 122  222211 111       1236


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        89 id~vi~~ag~   98 (256)
T PRK06124         89 LDILVNNVGA   98 (256)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.18  E-value=0.023  Score=48.07  Aligned_cols=73  Identities=18%  Similarity=0.238  Sum_probs=45.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecCh---hhHHHH-HHcC---CC---EEEcCCCc-cccccCCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSST---AKLDLL-RSLG---AD---LAIDYTKE-NIEDLPEKFD  216 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~---~~~~~~-~~~g---~~---~v~~~~~~-~~~~~~~~~d  216 (255)
                      ..+++++|+| +|++|.+++..+... |++ ++++.|+.   +|.+.+ +++.   ..   ...+..+. .+.+....+|
T Consensus       124 ~~~k~vlI~G-AGGagrAia~~La~~-G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D  201 (289)
T PRK12548        124 VKGKKLTVIG-AGGAATAIQVQCALD-GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD  201 (289)
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence            3578999999 589999988777664 775 88888885   454433 3332   11   11222211 1222334679


Q ss_pred             EEEECCC
Q 025278          217 VVFDAVG  223 (255)
Q Consensus       217 ~vid~~G  223 (255)
                      ++|+|+.
T Consensus       202 ilINaTp  208 (289)
T PRK12548        202 ILVNATL  208 (289)
T ss_pred             EEEEeCC
Confidence            9999985

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.17  E-value=0.02  Score=46.53  Aligned_cols=70  Identities=24%  Similarity=0.347  Sum_probs=52.6

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh--hHHHHHHcCCCEEEcCCCcc---ccccCCCccEEEECCCCc
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA--KLDLLRSLGADLAIDYTKEN---IEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~--~~~~~~~~g~~~v~~~~~~~---~~~~~~~~d~vid~~G~~  225 (255)
                      |+|+||+|.+|...++.+.. .+.+|.++.|+..  +.+.++..|+..+ ..+-.+   ..+..+|+|.||-+++..
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSDRAQQLQALGAEVV-EADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHHHHHHHHHTTTEEE-ES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchhhhhhhhcccceEe-ecccCCHHHHHHHHcCCceEEeecCcc
Confidence            78999999999999999998 5999999999864  3555677888654 333222   233357999999999843

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.17  E-value=0.032  Score=45.87  Aligned_cols=74  Identities=18%  Similarity=0.259  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh--hHHHHHHcCCCE-EEcCCCcc---ccc-------cCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA--KLDLLRSLGADL-AIDYTKEN---IED-------LPEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~--~~~~~~~~g~~~-v~~~~~~~---~~~-------~~~~~d  216 (255)
                      .|++++|+|++|++|...++.+.. .|++|+.+++++.  ..+.+++.+... .+..+-.+   ..+       ..+.+|
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~-~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAE-AGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            478999999999999999988877 4999998866432  223334444321 22222111   111       124689


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|+++|.
T Consensus        88 ~li~~Ag~   95 (253)
T PRK08993         88 ILVNNAGL   95 (253)
T ss_pred             EEEECCCC
Confidence            99999984

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.037  Score=44.39  Aligned_cols=72  Identities=17%  Similarity=0.251  Sum_probs=48.4

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCCEEEcCCCccccc---c---CCCccEEEECCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADLAIDYTKENIED---L---PEKFDVVFDAVG  223 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~---~---~~~~d~vid~~G  223 (255)
                      .++++|+|++|.+|...+..+.. . .+|++++++.++.+.+.+ .....++..+-.+..+   .   .+++|++|.+.|
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~-~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag   80 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAP-T-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAG   80 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHh-h-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            36899999999999998888876 4 889999998877665542 2112233222222111   1   136999999998


Q ss_pred             C
Q 025278          224 K  224 (255)
Q Consensus       224 ~  224 (255)
                      .
T Consensus        81 ~   81 (227)
T PRK08219         81 V   81 (227)
T ss_pred             c
Confidence            5

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.033  Score=45.42  Aligned_cols=43  Identities=21%  Similarity=0.322  Sum_probs=35.7

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL  195 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~  195 (255)
                      .+++|+||+|++|...+..+.. .|.+|+++++++++++.+.+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~   44 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAK-QGWQVIACGRNQSVLDELHTQ   44 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHh
Confidence            5799999999999987777766 499999999998887766543

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.13  E-value=0.036  Score=46.24  Aligned_cols=74  Identities=18%  Similarity=0.264  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EEcCCCccccc----------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AIDYTKENIED----------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~~~~~~~~~~----------~~~~  214 (255)
                      ..++++|+||+|++|...+..+.. .|.+|+++.++.++.+.+    +..+... .+..+-.+..+          ..++
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAA-AGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE   87 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            446899999999999999888877 489999888877665433    2234322 22222112111          1246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.++|.
T Consensus        88 id~vi~~Ag~   97 (274)
T PRK07775         88 IEVLVSGAGD   97 (274)
T ss_pred             CCEEEECCCc
Confidence            8999999984

>PRK08317 hypothetical protein; Provisional

Probab=96.13  E-value=0.035  Score=44.96  Aligned_cols=101  Identities=19%  Similarity=0.178  Sum_probs=64.1

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHh-cCCcEEEEecChhhHHHHHHc----CCC-EEEcCCCccccccCCCcc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHV-FGASKVAATSSTAKLDLLRSL----GAD-LAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~-~g~~vi~~~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~~d  216 (255)
                      ++...+.++++||-.| +|. |..+..+++.. ...++++++.+++.++.+++.    +.. .+...+........+.+|
T Consensus        12 ~~~~~~~~~~~vLdiG-~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         12 FELLAVQPGDRVLDVG-CGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             HHHcCCCCCCEEEEeC-CCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence            3567788999999999 665 88888888875 247899999999988888654    111 112211111111124689


Q ss_pred             EEEECCC------CccceeeeeeccccCCceEEEEe
Q 025278          217 VVFDAVG------KMCISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       217 ~vid~~G------~~~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      +|+-.-.      .......+.+.++ ++|.+++..
T Consensus        90 ~v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~  124 (241)
T PRK08317         90 AVRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLD  124 (241)
T ss_pred             EEEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEe
Confidence            8885422      1223334456666 789988765

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.13  E-value=0.039  Score=46.35  Aligned_cols=95  Identities=24%  Similarity=0.250  Sum_probs=58.2

Q ss_pred             ccchhHHHHHHHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc
Q 025278          131 SLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE  209 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  209 (255)
                      ..|++....+..++... --.|++|+|+|.+.-+|.-+++++... +++|++..+....                   ..
T Consensus       137 ~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~-gatVtv~~s~t~~-------------------l~  196 (286)
T PRK14175        137 FVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQK-NASVTILHSRSKD-------------------MA  196 (286)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCchh-------------------HH
Confidence            44666555555565544 347899999996666999999999884 8999988764322                   22


Q ss_pred             ccCCCccEEEECCCCccceeeeeeccccCCceEEEEeec
Q 025278          210 DLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       210 ~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      +..+.+|+||-++|.+....  ..+.+ ++-.++-+|..
T Consensus       197 ~~~~~ADIVIsAvg~p~~i~--~~~vk-~gavVIDvGi~  232 (286)
T PRK14175        197 SYLKDADVIVSAVGKPGLVT--KDVVK-EGAVIIDVGNT  232 (286)
T ss_pred             HHHhhCCEEEECCCCCcccC--HHHcC-CCcEEEEcCCC
Confidence            22345666666666554221  13333 34445555554

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.12  E-value=0.036  Score=45.65  Aligned_cols=73  Identities=26%  Similarity=0.345  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCC-EEE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGAD-LAI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~-~v~--~~~~~~-~~~-------~~~~  214 (255)
                      .++++||+||++++|...++.+.. .|++|+++.++ ++.+.+    .+.+.+ ..+  |..+.. ...       ..+.
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~-~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   91 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAK-AGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGK   91 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999888877 49999999887 333222    233432 122  222211 111       1236


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        92 id~li~~ag~  101 (258)
T PRK06935         92 IDILVNNAGT  101 (258)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.11  E-value=0.08  Score=42.63  Aligned_cols=101  Identities=18%  Similarity=0.082  Sum_probs=62.8

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHH----HcCCCE--EEcCCCccccccCCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLR----SLGADL--AIDYTKENIEDLPEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~----~~g~~~--v~~~~~~~~~~~~~~  214 (255)
                      .++...++++++||=+| + +.|..++.+++... ..+|+.++.+++-.+.++    ++|.+.  ++..+..........
T Consensus        69 ~~~~l~~~~~~~VLDiG-~-GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~  146 (215)
T TIGR00080        69 MTELLELKPGMKVLEIG-T-GSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP  146 (215)
T ss_pred             HHHHhCCCCcCEEEEEC-C-CccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence            34556788999999998 4 45778888887642 235999999988777664    345332  222221111111247


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      +|+|+-..........+.+.++ ++|+++..
T Consensus       147 fD~Ii~~~~~~~~~~~~~~~L~-~gG~lv~~  176 (215)
T TIGR00080       147 YDRIYVTAAGPKIPEALIDQLK-EGGILVMP  176 (215)
T ss_pred             CCEEEEcCCcccccHHHHHhcC-cCcEEEEE
Confidence            9998855444444445566677 88997764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.11  E-value=0.099  Score=44.76  Aligned_cols=95  Identities=20%  Similarity=0.161  Sum_probs=58.2

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHH-HHc---CCCEEEcCCCccccccCCCccEEEECC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLL-RSL---GADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~-~~~---g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      ....++|+|+| +|..|...+..+....+ .++.+..+++++.+.+ +++   |..... .  .+..+..++.|+|+.++
T Consensus       122 ~~~~~~v~iiG-~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~-~--~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        122 RKDASRLLVVG-TGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV-V--TDLEAAVRQADIISCAT  197 (314)
T ss_pred             CCCCceEEEEC-CcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE-e--CCHHHHHhcCCEEEEee
Confidence            35678999999 99999998764444334 6788889998886654 343   322111 1  12233346899999999


Q ss_pred             CCccceeeeeeccccCCceEEEEeec
Q 025278          223 GKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       223 G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ++.... .-...++ ++-.+..+|..
T Consensus       198 ~s~~pv-l~~~~l~-~g~~i~~ig~~  221 (314)
T PRK06141        198 LSTEPL-VRGEWLK-PGTHLDLVGNF  221 (314)
T ss_pred             CCCCCE-ecHHHcC-CCCEEEeeCCC
Confidence            876322 2234454 43445555543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.10  E-value=0.037  Score=45.09  Aligned_cols=74  Identities=18%  Similarity=0.218  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EEcCCCcccc---c-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AIDYTKENIE---D-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~~~~~~~~~---~-------~~~~  214 (255)
                      .+++++|+||+|.+|...+..+.. .|.+|++++++.++...+    ++.+.+. ++..+-.+..   +       ....
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~-~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAA-DGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR   83 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            467999999999999998887777 489999999986654433    2333221 2221111111   1       1136


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        84 ~d~vi~~ag~   93 (251)
T PRK12826         84 LDILVANAGI   93 (251)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.09  E-value=0.04  Score=45.75  Aligned_cols=72  Identities=17%  Similarity=0.169  Sum_probs=47.8

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EEcCCCccccc----------cCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AIDYTKENIED----------LPEKFD  216 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~~~~~~~~~~----------~~~~~d  216 (255)
                      ++++|+|++|++|...+..+.. .|.+|++++++.++.+.+    ++.+.+. .+..+-.+..+          ..+++|
T Consensus         1 ~~vlVtGasggIG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAR-EGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID   79 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            3789999999999998887777 499999999988776543    2233332 22111111111          124799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|.+.|.
T Consensus        80 ~lI~~ag~   87 (270)
T PRK05650         80 VIVNNAGV   87 (270)
T ss_pred             EEEECCCC
Confidence            99999984

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.09  E-value=0.043  Score=44.62  Aligned_cols=74  Identities=24%  Similarity=0.438  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-EE--cCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-AI--DYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~-~~~-------~~~~~d~  217 (255)
                      ++++++|+|++|++|...+..+.. .|.+|+...++.++++.+ .+++... ++  |-.+.+ ..+       ..+++|+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHA-QGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI   83 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467999999999999998888777 488888888877776654 3444221 22  222211 111       1246899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|.+.|.
T Consensus        84 vi~~ag~   90 (245)
T PRK12936         84 LVNNAGI   90 (245)
T ss_pred             EEECCCC
Confidence            9999984

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.07  E-value=0.017  Score=49.56  Aligned_cols=42  Identities=24%  Similarity=0.232  Sum_probs=36.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      .|++++|+||++++|...+..+.. .|++|+++++++++++.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~-~G~~Vil~~R~~~~l~~~   93 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLAR-KGLNLVLVARNPDKLKDV   93 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHH-CCCCEEEEECCHHHHHHH
Confidence            589999999999999998777766 499999999999887654

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.07  E-value=0.022  Score=48.69  Aligned_cols=74  Identities=23%  Similarity=0.301  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc----CC--C-EEE--cCCC-ccccccCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL----GA--D-LAI--DYTK-ENIEDLPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~----g~--~-~v~--~~~~-~~~~~~~~~~d~vi  219 (255)
                      .|++|+|+||+|.+|...+..+.. .|.+|+++.++.++.+...++    +.  . ..+  |..+ ..+.+..+++|+||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLL-RGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            578999999999999998887777 489998888876544332211    11  1 112  2111 12223345799999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .+++.
T Consensus        83 h~A~~   87 (322)
T PLN02986         83 HTASP   87 (322)
T ss_pred             EeCCC
Confidence            99873

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.03  E-value=0.075  Score=43.24  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=49.6

Q ss_pred             HHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCC---cEEEEecC----hhh--------HHHHHHcCCCEEEcCC
Q 025278          141 EGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGA---SKVAATSS----TAK--------LDLLRSLGADLAIDYT  204 (255)
Q Consensus       141 ~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~---~vi~~~~~----~~~--------~~~~~~~g~~~v~~~~  204 (255)
                      .+++... --.+++++|+| +|+.|..++..+... |.   ++++++++    .+|        .++++.++... .+  
T Consensus        14 ~al~~~g~~l~~~rvlvlG-AGgAg~aiA~~L~~~-G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~~--   88 (226)
T cd05311          14 NALKLVGKKIEEVKIVING-AGAAGIAIARLLLAA-GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-TG--   88 (226)
T ss_pred             HHHHHhCCCccCCEEEEEC-chHHHHHHHHHHHHc-CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-cc--
Confidence            3444333 24568999999 899999988888775 65   58888887    444        33445554221 11  


Q ss_pred             CccccccCCCccEEEECCC
Q 025278          205 KENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       205 ~~~~~~~~~~~d~vid~~G  223 (255)
                       .++.+..+++|++|++++
T Consensus        89 -~~l~~~l~~~dvlIgaT~  106 (226)
T cd05311          89 -GTLKEALKGADVFIGVSR  106 (226)
T ss_pred             -CCHHHHHhcCCEEEeCCC
Confidence             123233456899999997

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.039  Score=45.07  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .+++++|+|++|++|...+..+.. .|.+|+++.++.
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~-~G~~V~~~~r~~   40 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAG-AGAHVVVNYRQK   40 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHH-CCCEEEEEeCCc
Confidence            468999999999999998888877 489999888764

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.01  E-value=0.024  Score=50.01  Aligned_cols=78  Identities=23%  Similarity=0.341  Sum_probs=50.7

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHH-------HHHHc-CCCEE-EcCCCcc-ccccCC--
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLD-------LLRSL-GADLA-IDYTKEN-IEDLPE--  213 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~-------~~~~~-g~~~v-~~~~~~~-~~~~~~--  213 (255)
                      .+...+.+|+|+||+|.+|..++..+.. .|.+|++++++..+.+       ..+.. +...+ .|..+.+ +....+  
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~  133 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVR-RGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE  133 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh
Confidence            3445678999999999999999988877 4999999998765432       11112 23222 2333222 222112  


Q ss_pred             --CccEEEECCCC
Q 025278          214 --KFDVVFDAVGK  224 (255)
Q Consensus       214 --~~d~vid~~G~  224 (255)
                        ++|+||+|.+.
T Consensus       134 ~~~~D~Vi~~aa~  146 (390)
T PLN02657        134 GDPVDVVVSCLAS  146 (390)
T ss_pred             CCCCcEEEECCcc
Confidence              69999999874

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.01  E-value=0.047  Score=45.22  Aligned_cols=74  Identities=20%  Similarity=0.262  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EEcCCCccccc----------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AIDYTKENIED----------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~~~~~~~~~~----------~~~~  214 (255)
                      .+++++|+|+++++|...+..+.. .|++++++.+++++.+.+    ++.+... .+..+-.+..+          ..+.
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~-~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAK-AGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV   87 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            568999999999999988877777 499999999888766543    2334322 22222111111          1246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        88 id~li~~ag~   97 (265)
T PRK07097         88 IDILVNNAGI   97 (265)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.00  E-value=0.035  Score=44.27  Aligned_cols=75  Identities=20%  Similarity=0.346  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCE-EEcCCCc-cccc--------cCCCccE
Q 025278          150 AGKSILVLGG-AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADL-AIDYTKE-NIED--------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga-~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~-v~~~~~~-~~~~--------~~~~~d~  217 (255)
                      ..+.|||+|+ .|++|.+.+.-..+ .|+.|+++.|+-++...+. ++|... =+|-.++ +..+        ..+..|+
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~-~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~   84 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFAR-NGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL   84 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHh-CCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence            3467899885 79999987766665 5999999999999988776 777432 2333322 2111        1246899


Q ss_pred             EEECCCCc
Q 025278          218 VFDAVGKM  225 (255)
Q Consensus       218 vid~~G~~  225 (255)
                      .++..|.+
T Consensus        85 L~NNAG~~   92 (289)
T KOG1209|consen   85 LYNNAGQS   92 (289)
T ss_pred             EEcCCCCC
Confidence            99988843

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.032  Score=45.97  Aligned_cols=71  Identities=27%  Similarity=0.378  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE-EEcCCCcc-cc-------ccCCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL-AIDYTKEN-IE-------DLPEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~-v~~~~~~~-~~-------~~~~~~d~vid  220 (255)
                      .+++++|+|++|++|...++.+.. .|++|+++++++++..   .-.... ..|-.+.+ ..       +..+.+|++|+
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~-~G~~v~~~~r~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   83 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLE-AGARVVTTARSRPDDL---PEGVEFVAADLTTAEGCAAVARAVLERLGGVDILVH   83 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHH-CCCEEEEEeCChhhhc---CCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            578999999999999998888877 4999999988764321   101111 12222211 11       11246899999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      +.|.
T Consensus        84 ~ag~   87 (260)
T PRK06523         84 VLGG   87 (260)
T ss_pred             CCcc
Confidence            9983

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=95.99  E-value=0.044  Score=46.85  Aligned_cols=73  Identities=15%  Similarity=0.250  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHH-HHcCC---C-EE--EcCCCcc-cc-------ccCCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLL-RSLGA---D-LA--IDYTKEN-IE-------DLPEK  214 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~-~~~g~---~-~v--~~~~~~~-~~-------~~~~~  214 (255)
                      +++++|+|+++++|...+..+.. .| .+|+++.+++++.+.+ ++++.   . .+  .|-.+.. ..       +..++
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~-~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   81 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAA-TGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP   81 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            57899999999999998877766 48 8999999988776544 33321   1 11  2322211 11       11246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        82 iD~lI~nAG~   91 (314)
T TIGR01289        82 LDALVCNAAV   91 (314)
T ss_pred             CCEEEECCCc
Confidence            9999999884

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK07102 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.04  Score=44.94  Aligned_cols=40  Identities=23%  Similarity=0.333  Sum_probs=34.0

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      ++++|+||+|++|...++.+.+ .|.+|+++++++++.+..
T Consensus         2 ~~vlItGas~giG~~~a~~l~~-~G~~Vi~~~r~~~~~~~~   41 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAA-AGARLYLAARDVERLERL   41 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHH
Confidence            5799999999999998888887 499999999988776543

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=95.95  E-value=0.034  Score=47.56  Aligned_cols=74  Identities=20%  Similarity=0.232  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCC---CEEE--cCCCc-cccccCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGA---DLAI--DYTKE-NIEDLPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~---~~v~--~~~~~-~~~~~~~~~d~vi  219 (255)
                      .+++|||+||+|.+|...+..+.. .|.+|++++++.++.+....    .+.   -..+  |..+. .+.+..+++|+||
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLF-RGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            478999999999999999888877 48999888777654332211    111   1122  22222 2223345789999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .++|.
T Consensus        83 h~A~~   87 (325)
T PLN02989         83 HTASP   87 (325)
T ss_pred             EeCCC
Confidence            99883

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=95.95  E-value=0.038  Score=44.50  Aligned_cols=96  Identities=14%  Similarity=0.026  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE-----------------EcCCCccccc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA-----------------IDYTKENIED  210 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v-----------------~~~~~~~~~~  210 (255)
                      .++.+||+.| + |.|.-+..+|++  |.+|++++.++.-++.+ ++.+....                 +..+-.++..
T Consensus        33 ~~~~rvLd~G-C-G~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        33 PAGARVFVPL-C-GKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCeEEEeC-C-CchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            5778999998 4 459999999874  99999999999888775 33332110                 1111011111


Q ss_pred             -cCCCccEEEECCCC--------ccceeeeeeccccCCceEEEEeecc
Q 025278          211 -LPEKFDVVFDAVGK--------MCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       211 -~~~~~d~vid~~G~--------~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                       ....+|.|+|+.--        ........++++ ++|++++++...
T Consensus       109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk-pgG~~ll~~~~~  155 (213)
T TIGR03840       109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLP-PGARQLLITLDY  155 (213)
T ss_pred             ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcC-CCCeEEEEEEEc
Confidence             12358999997541        112234466677 899877777643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02427 UDP-apiose/xylose synthase

Probab=95.94  E-value=0.034  Score=48.90  Aligned_cols=76  Identities=13%  Similarity=0.088  Sum_probs=49.7

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC------CEEE--cCCC-ccccccCCCccEE
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA------DLAI--DYTK-ENIEDLPEKFDVV  218 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~------~~v~--~~~~-~~~~~~~~~~d~v  218 (255)
                      .-+.++|||+||+|-+|...++.+...++.+|++++++.++.+.+...+.      -..+  |-.+ ..+.+..+++|+|
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V   90 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT   90 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence            34456899999999999988887776335889999887766555433321      1112  2111 1223334579999


Q ss_pred             EECCC
Q 025278          219 FDAVG  223 (255)
Q Consensus       219 id~~G  223 (255)
                      |.+++
T Consensus        91 iHlAa   95 (386)
T PLN02427         91 INLAA   95 (386)
T ss_pred             EEccc
Confidence            99987

>PRK06128 oxidoreductase; Provisional

Probab=95.94  E-value=0.046  Score=46.28  Aligned_cols=74  Identities=20%  Similarity=0.330  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh--hH----HHHHHcCCCE-EE--cCCCcc-cc-------ccC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA--KL----DLLRSLGADL-AI--DYTKEN-IE-------DLP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~--~~----~~~~~~g~~~-v~--~~~~~~-~~-------~~~  212 (255)
                      .++++||+||+|++|...+..+... |++|+++.++.+  +.    +.+++.|... .+  |..+.. ..       +..
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~-G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFARE-GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHc-CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999988888774 999987765432  11    2233445332 22  222211 11       112


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|++.|.
T Consensus       133 g~iD~lV~nAg~  144 (300)
T PRK06128        133 GGLDILVNIAGK  144 (300)
T ss_pred             CCCCEEEECCcc
Confidence            478999999984

>PRK12743 oxidoreductase; Provisional

Probab=95.92  E-value=0.05  Score=44.77  Aligned_cols=73  Identities=16%  Similarity=0.155  Sum_probs=46.8

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH----HHcCCCE-EE--cCCCcc-cc-------ccCCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL----RSLGADL-AI--DYTKEN-IE-------DLPEK  214 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~----~~~g~~~-v~--~~~~~~-~~-------~~~~~  214 (255)
                      +++++|+||++++|..+++.+.. .|.+|+++.+ +.++.+.+    +..+... .+  |..+.. ..       +..+.
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQ-QGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999999998888 4999988754 44443332    3345332 22  222211 10       11246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        81 id~li~~ag~   90 (256)
T PRK12743         81 IDVLVNNAGA   90 (256)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=95.91  E-value=0.005  Score=30.65  Aligned_cols=22  Identities=36%  Similarity=0.502  Sum_probs=14.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSL   27 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~   27 (255)
                      |||+++.++++.    +++ ++|.|.+
T Consensus         1 MkAv~y~G~~~v----~ve-~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKDV----RVE-EVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTEE----EEE-EE----S
T ss_pred             CcceEEeCCCce----EEE-ECCCccc
Confidence            999999998886    888 8888865

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.91  E-value=0.043  Score=45.36  Aligned_cols=74  Identities=22%  Similarity=0.262  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecCh---hhHHHH-HHc-CCC-EE--EcCCCcc-cc-------cc
Q 025278          150 AGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSST---AKLDLL-RSL-GAD-LA--IDYTKEN-IE-------DL  211 (255)
Q Consensus       150 ~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~---~~~~~~-~~~-g~~-~v--~~~~~~~-~~-------~~  211 (255)
                      .+++++|+||+  +++|.+.++.+.. .|++|+++.++.   ++++.+ +++ +.. ..  .|-.+.. ..       +.
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHN-AGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHH-CCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            47899999986  7999998887777 499999886543   334433 333 211 12  2322221 11       11


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+.+|++++++|.
T Consensus        85 ~g~ld~lv~nag~   97 (257)
T PRK08594         85 VGVIHGVAHCIAF   97 (257)
T ss_pred             CCCccEEEECccc
Confidence            2469999999883

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.91  E-value=0.06  Score=45.32  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=28.2

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS  184 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~  184 (255)
                      .-.|++|+|+|+++-+|...++++... +++|.+..+
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~-gatVtv~~~  191 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNA-NATVTICHS  191 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhC-CCEEEEEeC
Confidence            357889999994444999999988874 787777765

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.90  E-value=0.046  Score=45.28  Aligned_cols=74  Identities=22%  Similarity=0.331  Sum_probs=46.0

Q ss_pred             CCCEEEEEcC--CchHHHHHHHHHHHhcCCcEEEEecC---hhhHHHH-HHcCCCEEE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGG--AGGVGTMVIQLAKHVFGASKVAATSS---TAKLDLL-RSLGADLAI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga--~g~~G~~a~~~a~~~~g~~vi~~~~~---~~~~~~~-~~~g~~~v~--~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+||  ++++|.+.++.+.. .|++|+++.+.   +++++.+ ++++....+  |-.+.+ ..+       ..+
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKR-EGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD   83 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHH-CCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence            5789999996  57999998777766 49999887543   3444333 344532222  222211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|++.|.
T Consensus        84 ~iD~lvnnAG~   94 (260)
T PRK06997         84 GLDGLVHSIGF   94 (260)
T ss_pred             CCcEEEEcccc
Confidence            79999999984

>PLN00203 glutamyl-tRNA reductase

Probab=95.86  E-value=0.031  Score=51.03  Aligned_cols=73  Identities=21%  Similarity=0.361  Sum_probs=51.8

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHH-HcC-CCE-EEcCCCccccccCCCccEEEECCCCcc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLR-SLG-ADL-AIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~-~~g-~~~-v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      +.+|+|+| +|.+|.+++..+... |. +++++.++.++.+.+. +++ ... +...  .+..+...+.|+||.|+++..
T Consensus       266 ~kkVlVIG-AG~mG~~~a~~L~~~-G~~~V~V~nRs~era~~La~~~~g~~i~~~~~--~dl~~al~~aDVVIsAT~s~~  341 (519)
T PLN00203        266 SARVLVIG-AGKMGKLLVKHLVSK-GCTKMVVVNRSEERVAALREEFPDVEIIYKPL--DEMLACAAEADVVFTSTSSET  341 (519)
T ss_pred             CCEEEEEe-CHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhCCCceEeecH--hhHHHHHhcCCEEEEccCCCC
Confidence            68999999 799999999988874 75 6888899988876654 553 321 1111  122233468999999998665


Q ss_pred             c
Q 025278          227 I  227 (255)
Q Consensus       227 ~  227 (255)
                      -
T Consensus       342 p  342 (519)
T PLN00203        342 P  342 (519)
T ss_pred             C
Confidence            4

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.85  E-value=0.079  Score=44.75  Aligned_cols=73  Identities=15%  Similarity=0.191  Sum_probs=43.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh---hHHHH-HHcCCC----E-EEcCCCc-cccccCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA---KLDLL-RSLGAD----L-AIDYTKE-NIEDLPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~---~~~~~-~~~g~~----~-v~~~~~~-~~~~~~~~~d~vi  219 (255)
                      .+++++|+| +|+.+.+++..+...+..++.++.|+++   |.+.+ ++++..    . +....+. .+.+....+|+||
T Consensus       123 ~~k~vlvlG-aGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivI  201 (288)
T PRK12749        123 KGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT  201 (288)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEE
Confidence            567999999 7888988666555543357778888843   44433 344321    1 1111110 1122235789999


Q ss_pred             ECCC
Q 025278          220 DAVG  223 (255)
Q Consensus       220 d~~G  223 (255)
                      +|+.
T Consensus       202 NaTp  205 (288)
T PRK12749        202 NGTK  205 (288)
T ss_pred             ECCC
Confidence            9976

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=95.85  E-value=0.065  Score=40.61  Aligned_cols=97  Identities=16%  Similarity=0.193  Sum_probs=54.1

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE-e-cChhhHHHHHH----cC---CCE-------EEcCCC------ccccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA-T-SSTAKLDLLRS----LG---ADL-------AIDYTK------ENIED  210 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~-~~~~~~~~~~~----~g---~~~-------v~~~~~------~~~~~  210 (255)
                      +|.|+| .|.+|...++.+......+++++ + .+.+-+.++-+    .|   .+.       +++...      .+..+
T Consensus         2 kv~I~G-~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~~   80 (149)
T smart00846        2 KVGING-FGRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPAN   80 (149)
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChHH
Confidence            588999 79999998888775456777765 3 24555555433    22   111       111110      00000


Q ss_pred             c---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          211 L---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       211 ~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      .   ..++|+|+||+|...+...+..-++ .+-+-|+++.++++
T Consensus        81 ~~w~~~gvDiVie~tG~f~~~~~~~~hl~-~GakkViisap~~~  123 (149)
T smart00846       81 LPWKELGVDIVVECTGKFTTREKASAHLK-AGAKKVIISAPAKD  123 (149)
T ss_pred             CcccccCCeEEEeccccccchHHHHHHHH-cCCCEEEeCCCCCC
Confidence            0   1378999999997554444433333 24456666666554

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.84  E-value=0.057  Score=49.00  Aligned_cols=71  Identities=24%  Similarity=0.313  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-----hHHHHHHcCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-----KLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-----~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      ..+++|+|+| .|.+|+.++.+++. .|.+|++++.++.     ..+.+++.|.....+....    ...++|+||-++|
T Consensus        14 ~~~~~v~viG-~G~~G~~~A~~L~~-~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~----~~~~~D~Vv~s~G   87 (480)
T PRK01438         14 WQGLRVVVAG-LGVSGFAAADALLE-LGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT----LPEDTDLVVTSPG   87 (480)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc----ccCCCCEEEECCC
Confidence            3567899999 89999999999988 4999999986542     2344567787655433221    2346899999998


Q ss_pred             Cc
Q 025278          224 KM  225 (255)
Q Consensus       224 ~~  225 (255)
                      -+
T Consensus        88 i~   89 (480)
T PRK01438         88 WR   89 (480)
T ss_pred             cC
Confidence            53

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.82  E-value=0.053  Score=44.27  Aligned_cols=74  Identities=20%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHHH----HHcCCCE-EE--cCCCcc-cc----c---cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLL----RSLGADL-AI--DYTKEN-IE----D---LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~----~---~~~  213 (255)
                      ++++++|+||+|++|...+..+.. .|.+|++. .++.++.+.+    ++.+... .+  |..+.. ..    +   ..+
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~-~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAE-EGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG   81 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467999999999999998888887 48888764 5666554332    3334332 22  222211 11    1   123


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|.+.|.
T Consensus        82 ~id~vi~~ag~   92 (250)
T PRK08063         82 RLDVFVNNAAS   92 (250)
T ss_pred             CCCEEEECCCC
Confidence            68999999884

>PRK05599 hypothetical protein; Provisional

Probab=95.82  E-value=0.055  Score=44.39  Aligned_cols=71  Identities=25%  Similarity=0.323  Sum_probs=47.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCC--EEE--cCCCcc-cc-------ccCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGAD--LAI--DYTKEN-IE-------DLPEKF  215 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~--~v~--~~~~~~-~~-------~~~~~~  215 (255)
                      ++++|+||++++|...+..+. . |.+|+++.+++++++.+    ++.|.+  ..+  |-.+.+ ..       +..+.+
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~-g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-H-GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence            368999999999999888765 3 89999999988877654    233432  222  222211 11       112479


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|++.|.
T Consensus        79 d~lv~nag~   87 (246)
T PRK05599         79 SLAVVAFGI   87 (246)
T ss_pred             CEEEEecCc
Confidence            999999884

>PRK08278 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.053  Score=45.23  Aligned_cols=37  Identities=27%  Similarity=0.476  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      .+++++|+||+|++|...+..+.. .|.+|++++++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~   41 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAAR-DGANIVIAAKTAE   41 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEecccc
Confidence            467999999999999998888777 4999999988654

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.80  E-value=0.047  Score=41.99  Aligned_cols=80  Identities=21%  Similarity=0.269  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-hhHHHHHHcCCCEEEcCCCcccccc-----------CCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLDLLRSLGADLAIDYTKENIEDL-----------PEKFD  216 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~-----------~~~~d  216 (255)
                      .+|-.-+|+|+++++|.+++.-+... |+.++..+... .-.+.++++|-..++.+.+...++.           -+..|
T Consensus         7 ~kglvalvtggasglg~ataerlakq-gasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld   85 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQ-GASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLD   85 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhc-CceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhcccee
Confidence            35556799999999999988877764 99999998644 4466789999887776644322211           23589


Q ss_pred             EEEECCCCcccee
Q 025278          217 VVFDAVGKMCISI  229 (255)
Q Consensus       217 ~vid~~G~~~~~~  229 (255)
                      +.++|.|-.....
T Consensus        86 ~~vncagia~a~k   98 (260)
T KOG1199|consen   86 ALVNCAGIAYAFK   98 (260)
T ss_pred             eeeeccceeeeee
Confidence            9999999554433

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.79  E-value=0.031  Score=43.23  Aligned_cols=48  Identities=35%  Similarity=0.488  Sum_probs=40.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA  200 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v  200 (255)
                      ..+|+|+| +|.+|+.|+.+++.+ |++++..+...++++..+..+...+
T Consensus        20 p~~vvv~G-~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~~~i   67 (168)
T PF01262_consen   20 PAKVVVTG-AGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGAYFI   67 (168)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTTEES
T ss_pred             CeEEEEEC-CCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccCceE
Confidence            36899999 999999999999997 9999999999999988888776544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK05855 short chain dehydrogenase; Validated

Probab=95.79  E-value=0.048  Score=50.32  Aligned_cols=74  Identities=27%  Similarity=0.351  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-E--EcCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-A--IDYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v--~~~~~~~-~~~-------~~~~  214 (255)
                      .+.+++|+||+|++|...++.+.. .|.+|++++++.++.+.+    ++.|... +  .|..+.. ..+       ..+.
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  392 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAR-EGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGV  392 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            457899999999999998887777 499999999988776544    2334321 2  2222211 111       1246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus       393 id~lv~~Ag~  402 (582)
T PRK05855        393 PDIVVNNAGI  402 (582)
T ss_pred             CcEEEECCcc
Confidence            8999999984

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.78  E-value=0.016  Score=48.76  Aligned_cols=70  Identities=30%  Similarity=0.397  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCC-EEEcCCCccccccCCCccEEEEC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGAD-LAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~-~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      .++ .|.|+| .|-+|.-++.+|..+ |++|.+.+.|.+|++.+.. ++-. ++.-++..++++...+.|++|.+
T Consensus       167 ~~~-kv~iiG-GGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIga  238 (371)
T COG0686         167 LPA-KVVVLG-GGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGA  238 (371)
T ss_pred             CCc-cEEEEC-CccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEE
Confidence            344 477778 799999999999996 9999999999999999864 4443 34444555566656677777766

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.74  E-value=0.057  Score=46.86  Aligned_cols=75  Identities=23%  Similarity=0.246  Sum_probs=49.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc--CCC-EEEcCC--Cc-cccccCCCccEEEEC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL--GAD-LAIDYT--KE-NIEDLPEKFDVVFDA  221 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~--g~~-~v~~~~--~~-~~~~~~~~~d~vid~  221 (255)
                      ..+.+|||+|++|.+|...++.+.. .|.+|++++++.++.+.+. .+  +.. .++..+  +. .+.+..+++|+||.+
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~   86 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQ-RGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHV   86 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence            4577999999999999999988887 4999999888766554332 22  111 122221  11 122334578999999


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      ++.
T Consensus        87 A~~   89 (353)
T PLN02896         87 AAS   89 (353)
T ss_pred             Ccc
Confidence            873

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=95.72  E-value=0.043  Score=44.75  Aligned_cols=75  Identities=24%  Similarity=0.353  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhH-HHH---HHcCCCEE---EcCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKL-DLL---RSLGADLA---IDYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~-~~~---~~~g~~~v---~~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+|++|++|...++.+... |+++++..+ ++.+. +.+   ++.+....   .|..+.. ..+       ..+
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKD-GFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG   80 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHc-CCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4678999999999999999888874 888887543 33322 222   33454332   2222211 111       124


Q ss_pred             CccEEEECCCCc
Q 025278          214 KFDVVFDAVGKM  225 (255)
Q Consensus       214 ~~d~vid~~G~~  225 (255)
                      ++|++|++.|..
T Consensus        81 ~id~li~~ag~~   92 (246)
T PRK12938         81 EIDVLVNNAGIT   92 (246)
T ss_pred             CCCEEEECCCCC
Confidence            789999999853

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.71  E-value=0.044  Score=44.54  Aligned_cols=74  Identities=30%  Similarity=0.412  Sum_probs=47.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHHHH----HcCCCE-EEcCCCccccc---c-------CCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLLR----SLGADL-AIDYTKENIED---L-------PEK  214 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~~----~~g~~~-v~~~~~~~~~~---~-------~~~  214 (255)
                      +++++|+|++|++|...+..+.. .|.+++++ ++++++.+.+.    +.+... ++..+-.+...   .       ..+
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~-~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAK-EGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGK   83 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            56899999999999998887776 48999988 88877654432    222222 22222111111   1       136


Q ss_pred             ccEEEECCCCc
Q 025278          215 FDVVFDAVGKM  225 (255)
Q Consensus       215 ~d~vid~~G~~  225 (255)
                      +|++|.+.|..
T Consensus        84 id~vi~~ag~~   94 (247)
T PRK05565         84 IDILVNNAGIS   94 (247)
T ss_pred             CCEEEECCCcC
Confidence            99999998843

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.70  E-value=0.067  Score=43.78  Aligned_cols=101  Identities=17%  Similarity=0.188  Sum_probs=66.6

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHH----HcCCCEEEcCCCcccccc--CCCc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLR----SLGADLAIDYTKENIEDL--PEKF  215 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~--~~~~  215 (255)
                      +...++.+|++|+=.| + +.|.+++.+|+..+. .+|+..+..++..+.|+    ++|....+.....+..+.  .+.+
T Consensus        87 ~~~~gi~pg~rVlEAG-t-GSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~v  164 (256)
T COG2519          87 VARLGISPGSRVLEAG-T-GSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDV  164 (256)
T ss_pred             HHHcCCCCCCEEEEcc-c-CchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccccc
Confidence            3567889999998766 4 458888899987755 78999999999888874    345333222222222221  2378


Q ss_pred             cEEEECCC-CccceeeeeeccccCCceEEEEe
Q 025278          216 DVVFDAVG-KMCISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       216 d~vid~~G-~~~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      |++|=-.. .......+...++ ++|++++|-
T Consensus       165 Dav~LDmp~PW~~le~~~~~Lk-pgg~~~~y~  195 (256)
T COG2519         165 DAVFLDLPDPWNVLEHVSDALK-PGGVVVVYS  195 (256)
T ss_pred             CEEEEcCCChHHHHHHHHHHhC-CCcEEEEEc
Confidence            88874444 4444555566676 789988875

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=95.69  E-value=0.033  Score=48.15  Aligned_cols=72  Identities=22%  Similarity=0.146  Sum_probs=45.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCC----ccccccCCCccEEEECCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK----ENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~----~~~~~~~~~~d~vid~~G  223 (255)
                      ++|||+||+|-+|...+..+...++.+|++++++.++...+....--.++..+-    ..+.+..+++|+||.+++
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa   77 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVA   77 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECcc
Confidence            379999999999999888887633689999988765544332211112222221    112233457999999866

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=95.67  E-value=0.056  Score=44.57  Aligned_cols=101  Identities=16%  Similarity=0.066  Sum_probs=61.1

Q ss_pred             hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC-CEEEcCCCccccccCCCccEEEECCC
Q 025278          145 RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA-DLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       145 ~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      .....++.+||-+| +|. |..+..+++  .+.+++++|.+++.++.+++... ...+..+.+...-..+.+|+|+....
T Consensus        37 ~l~~~~~~~vLDiG-cG~-G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~  112 (251)
T PRK10258         37 MLPQRKFTHVLDAG-CGP-GWMSRYWRE--RGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLA  112 (251)
T ss_pred             hcCccCCCeEEEee-CCC-CHHHHHHHH--cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECch
Confidence            33444678899998 665 776666665  37899999999999988876532 22222222221111246999996543


Q ss_pred             C------ccceeeeeeccccCCceEEEEeeccC
Q 025278          224 K------MCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       224 ~------~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      -      ......+.+.++ ++|.+++.....+
T Consensus       113 l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~~~~~  144 (251)
T PRK10258        113 VQWCGNLSTALRELYRVVR-PGGVVAFTTLVQG  144 (251)
T ss_pred             hhhcCCHHHHHHHHHHHcC-CCeEEEEEeCCCC
Confidence            1      112233355566 7898887655443

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=95.67  E-value=0.044  Score=45.36  Aligned_cols=71  Identities=21%  Similarity=0.306  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE-EEcCCCcc-ccc-------cCCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL-AIDYTKEN-IED-------LPEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~-v~~~~~~~-~~~-------~~~~~d~vid  220 (255)
                      .+++++|+|++|++|...++.+.. .|++|+.+++++++.+.   ..... ..|..+.. ..+       ..+.+|++|.
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~-~G~~v~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~   83 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLA-NGANVVNADIHGGDGQH---ENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVN   83 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCcccccc---CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            468999999999999998888877 49999999887665421   11111 12222211 111       1246899999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      +.|.
T Consensus        84 ~Ag~   87 (266)
T PRK06171         84 NAGI   87 (266)
T ss_pred             CCcc
Confidence            9984

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=95.65  E-value=0.081  Score=43.68  Aligned_cols=73  Identities=14%  Similarity=0.277  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH-HH----cCCC-EEE--cCCCcc-cc-------ccC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL-RS----LGAD-LAI--DYTKEN-IE-------DLP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~-~~----~g~~-~v~--~~~~~~-~~-------~~~  212 (255)
                      .+++++|+||++++|...+..+.. .|++|+.+.+ ++++.+.. ++    .+.. ..+  |..+.+ ..       +..
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQ-SGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            578999999999999998887777 4999887754 44544332 22    2322 222  322211 11       112


Q ss_pred             CCccEEEECCC
Q 025278          213 EKFDVVFDAVG  223 (255)
Q Consensus       213 ~~~d~vid~~G  223 (255)
                      +.+|++|++.|
T Consensus        86 g~id~lv~nAg   96 (260)
T PRK08416         86 DRVDFFISNAI   96 (260)
T ss_pred             CCccEEEECcc
Confidence            46899999987

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=95.65  E-value=0.061  Score=44.49  Aligned_cols=35  Identities=26%  Similarity=0.155  Sum_probs=28.0

Q ss_pred             CCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecC
Q 025278          150 AGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       150 ~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      .+++++|+||+  +++|.+.+..+.. .|++|++..++
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~-~G~~v~~~~~~   41 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHA-AGAELGITYLP   41 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHH-CCCEEEEEecC
Confidence            47899999975  7999998877776 49999877543

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.65  E-value=0.035  Score=45.17  Aligned_cols=42  Identities=29%  Similarity=0.434  Sum_probs=35.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      .+++++|+|++|++|...++.+.. .|.+|+++++++++.+.+
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~-~g~~V~~~~r~~~~~~~~   46 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAA-AGATVILVARHQKKLEKV   46 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHH-cCCEEEEEeCChHHHHHH
Confidence            467999999999999998888887 499999999988776544

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.65  E-value=0.059  Score=46.23  Aligned_cols=75  Identities=20%  Similarity=0.211  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHH-HHcCC-C-EEE--cCCCc-cccccCCCccEEEECC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLL-RSLGA-D-LAI--DYTKE-NIEDLPEKFDVVFDAV  222 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~-~~~g~-~-~v~--~~~~~-~~~~~~~~~d~vid~~  222 (255)
                      .|++|||+||+|.+|...+..+...+ +.+|+++++++.+...+ +.+.. . ..+  |..+. .+.+..+++|+||.++
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~A   82 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA   82 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECc
Confidence            46899999999999999888777642 26788888776554333 23321 1 122  22221 1222345799999998


Q ss_pred             CC
Q 025278          223 GK  224 (255)
Q Consensus       223 G~  224 (255)
                      |.
T Consensus        83 g~   84 (324)
T TIGR03589        83 AL   84 (324)
T ss_pred             cc
Confidence            84

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.64  E-value=0.015  Score=49.55  Aligned_cols=71  Identities=20%  Similarity=0.288  Sum_probs=48.8

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      +|+|+|++|.+|...++.+.. .|.+|+++++++++.....+.+...+ .|..+. ...+..+++|+||++++.
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~   74 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLE-QGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAAD   74 (328)
T ss_pred             eEEEECCccchhHHHHHHHHH-CCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEecee
Confidence            689999999999999988887 48999999988766543333343322 122221 223334578999998864

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=95.63  E-value=0.087  Score=46.14  Aligned_cols=75  Identities=17%  Similarity=0.191  Sum_probs=46.9

Q ss_pred             CCCCEEEEEcCCchHHHH--HHHHHHHhcCCcEEEEecChh--h--------------HHHHHHcCCC-EEEcCCCcccc
Q 025278          149 SAGKSILVLGGAGGVGTM--VIQLAKHVFGASKVAATSSTA--K--------------LDLLRSLGAD-LAIDYTKENIE  209 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~--a~~~a~~~~g~~vi~~~~~~~--~--------------~~~~~~~g~~-~v~~~~~~~~~  209 (255)
                      ..++++||+|+++++|++  .++.+ . .|++++++....+  +              .+.+++.|.. ..++-+-.+.+
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~-~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E  116 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-G-AGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE  116 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-H-cCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence            557899999999999999  45555 5 4898888874221  1              2234556643 23332222211


Q ss_pred             ----------ccCCCccEEEECCCCc
Q 025278          210 ----------DLPEKFDVVFDAVGKM  225 (255)
Q Consensus       210 ----------~~~~~~d~vid~~G~~  225 (255)
                                +..+++|+++++.+..
T Consensus       117 ~v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        117 IKQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCccC
Confidence                      1134799999999855

>PLN02686 cinnamoyl-CoA reductase

Probab=95.63  E-value=0.033  Score=48.73  Aligned_cols=46  Identities=20%  Similarity=0.239  Sum_probs=36.5

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS  194 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~  194 (255)
                      ...+++|||+||+|.+|..++..+.. .|.+|+++.++.++.+.+++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~-~G~~V~~~~r~~~~~~~l~~   95 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLR-HGYSVRIAVDTQEDKEKLRE   95 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHH
Confidence            35678999999999999999988887 49999888877665544433

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=95.59  E-value=0.072  Score=43.57  Aligned_cols=107  Identities=21%  Similarity=0.199  Sum_probs=71.8

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCE--EEcCCCccccccCCCccE
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADL--AIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~~d~  217 (255)
                      .....++|++||=.+  +|.|-.+..+++..+..+|+++|.+++-++.+++    .|...  .+..+.++..-..+.+|+
T Consensus        45 ~~~~~~~g~~vLDva--~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~  122 (238)
T COG2226          45 SLLGIKPGDKVLDVA--CGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDA  122 (238)
T ss_pred             HhhCCCCCCEEEEec--CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCE
Confidence            345566899999775  5679999999999767899999999998888754    22221  122233322222357899


Q ss_pred             EEECCCC------ccceeeeeeccccCCceEEEEeeccCCCC
Q 025278          218 VFDAVGK------MCISIVYQKCDKFQEKSLINFGLFRQEVP  253 (255)
Q Consensus       218 vid~~G~------~~~~~~~~~~~~~~~G~~v~~G~~~~~~~  253 (255)
                      |.-+-|-      +.....+.+-++ ++|++++.-......+
T Consensus       123 vt~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vle~~~p~~~  163 (238)
T COG2226         123 VTISFGLRNVTDIDKALKEMYRVLK-PGGRLLVLEFSKPDNP  163 (238)
T ss_pred             EEeeehhhcCCCHHHHHHHHHHhhc-CCeEEEEEEcCCCCch
Confidence            9887772      223333455666 8999999888766544

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.58  E-value=0.047  Score=46.51  Aligned_cols=73  Identities=18%  Similarity=0.264  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH---HHc-CC--C-EEEcC--CC-ccccccCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL---RSL-GA--D-LAIDY--TK-ENIEDLPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~---~~~-g~--~-~v~~~--~~-~~~~~~~~~~d~vi  219 (255)
                      .+++|||+||+|-+|...+..+.. .|.+|++++++.++....   ..+ +.  . ..+..  .+ ..+....+++|+||
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQ-RGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHH-CCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            367899999999999998888887 499999888776543222   111 11  1 12222  11 12333345799999


Q ss_pred             ECCC
Q 025278          220 DAVG  223 (255)
Q Consensus       220 d~~G  223 (255)
                      .+++
T Consensus        82 h~A~   85 (322)
T PLN02662         82 HTAS   85 (322)
T ss_pred             EeCC
Confidence            9987

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=95.57  E-value=0.041  Score=52.07  Aligned_cols=76  Identities=17%  Similarity=0.127  Sum_probs=49.3

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc-CCCEEE-cCCCc-c-ccccCCCccEEEECCC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL-GADLAI-DYTKE-N-IEDLPEKFDVVFDAVG  223 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~-g~~~v~-~~~~~-~-~~~~~~~~d~vid~~G  223 (255)
                      .+++++|||+||+|-+|...++.+...++.+|+++++.+.+....... +...+. |-.+. . ..+..+++|+||.+++
T Consensus       312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa  391 (660)
T PRK08125        312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVA  391 (660)
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEEECcc
Confidence            457789999999999999999877753478999999876543322111 222211 22221 1 1223458999999877

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.55  E-value=0.089  Score=42.75  Aligned_cols=74  Identities=18%  Similarity=0.292  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-hHH----HHHHcCCC-EEEcCCCccccc----------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-KLD----LLRSLGAD-LAIDYTKENIED----------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-~~~----~~~~~g~~-~v~~~~~~~~~~----------~~~  213 (255)
                      ++++++|+|++|++|...+..+.. .|.+++++.++.+ +.+    .+++.+.. ..+..+-.+..+          ..+
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAA-DGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            568999999999999999888877 4888887765432 222    22333432 222222111111          124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|.++|.
T Consensus        83 ~id~vi~~ag~   93 (245)
T PRK12937         83 RIDVLVNNAGV   93 (245)
T ss_pred             CCCEEEECCCC
Confidence            78999999984

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.54  E-value=0.055  Score=46.13  Aligned_cols=70  Identities=19%  Similarity=0.256  Sum_probs=51.0

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFG--ASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g--~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      .+|.|+| +|.+|...+..++.. |  .+|+++++++++.+.+++.|....+.   .+..+..+..|+||.|+....
T Consensus         7 ~~I~IIG-~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~~g~~~~~~---~~~~~~~~~aDvViiavp~~~   78 (307)
T PRK07502          7 DRVALIG-IGLIGSSLARAIRRL-GLAGEIVGADRSAETRARARELGLGDRVT---TSAAEAVKGADLVILCVPVGA   78 (307)
T ss_pred             cEEEEEe-eCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhCCCCceec---CCHHHHhcCCCEEEECCCHHH
Confidence            5799999 999999988888764 6  37889999999988888887532211   112223457899999988543

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.54  E-value=0.045  Score=47.45  Aligned_cols=49  Identities=24%  Similarity=0.299  Sum_probs=38.2

Q ss_pred             HHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          138 TAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       138 ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      |||.-++..-.-++++|+|+||+|-+|...+..+... |.+|+++++...
T Consensus         2 ~~~~~~~~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d~~~~   50 (348)
T PRK15181          2 TAYEELRTKLVLAPKRWLITGVAGFIGSGLLEELLFL-NQTVIGLDNFST   50 (348)
T ss_pred             chhhhhhhcccccCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            5676665433345578999999999999999888884 899999987543

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.53  E-value=0.038  Score=44.12  Aligned_cols=34  Identities=24%  Similarity=0.456  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSS  185 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~  185 (255)
                      ...+|+|.| +|++|..+++.+..+ |. ++.++|.+
T Consensus        20 ~~~~VlviG-~GglGs~ia~~La~~-Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIG-AGGLGSPAALYLAGA-GVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEEC-CCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence            346799999 999999988888876 64 67777755

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR02415 23BDH acetoin reductases

Probab=95.52  E-value=0.093  Score=42.93  Aligned_cols=72  Identities=24%  Similarity=0.296  Sum_probs=47.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPEKFD  216 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~~~d  216 (255)
                      ++++|+|++|++|...++.+.. .|++++.+.+++++.+.+    ++.+... .+  |-.+.. ..+       ....+|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   79 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAK-DGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD   79 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999998888877 499999998887655433    2334221 22  222211 111       123689


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|.+.|.
T Consensus        80 ~vi~~ag~   87 (254)
T TIGR02415        80 VMVNNAGV   87 (254)
T ss_pred             EEEECCCc
Confidence            99999984

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.51  E-value=0.074  Score=45.23  Aligned_cols=74  Identities=24%  Similarity=0.379  Sum_probs=46.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-hhHHH----HHHcCCCEEE---cCCCcc-cccc------CCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLDL----LRSLGADLAI---DYTKEN-IEDL------PEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-~~~~~----~~~~g~~~v~---~~~~~~-~~~~------~~~  214 (255)
                      .+++++|+|+++++|...+..+.. .|++|++.++++ ++.+.    ++..|....+   |..+.. ....      .+.
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~-~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~   89 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLAR-LGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGG   89 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            578999999999999998887777 499999887643 33322    2233433222   221111 1110      246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        90 iD~li~nAG~   99 (306)
T PRK07792         90 LDIVVNNAGI   99 (306)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.51  E-value=0.25  Score=42.52  Aligned_cols=94  Identities=14%  Similarity=0.124  Sum_probs=59.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHH-HHc----CCCEEEcCCCccccccCCCccEEEECC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLL-RSL----GADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~-~~~----g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      +..++++|+| +|..+.+.+..+....+ .++.+..++.+|.+.+ +++    |.+.. ..  .+..+...+.|+|+.|+
T Consensus       127 ~~~~~v~iiG-aG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~-~~--~~~~~av~~aDiVvtaT  202 (326)
T TIGR02992       127 EDSSVVAIFG-AGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVT-AA--TDPRAAMSGADIIVTTT  202 (326)
T ss_pred             CCCcEEEEEC-CCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEE-Ee--CCHHHHhccCCEEEEec
Confidence            4567899999 89999888777764346 4577888998886654 333    43221 11  22333346899999999


Q ss_pred             CCccceeeeeeccccCCceEEEEeec
Q 025278          223 GKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       223 G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ++..-. .....++ ++-.+..+|..
T Consensus       203 ~s~~p~-i~~~~l~-~g~~i~~vg~~  226 (326)
T TIGR02992       203 PSETPI-LHAEWLE-PGQHVTAMGSD  226 (326)
T ss_pred             CCCCcE-ecHHHcC-CCcEEEeeCCC
Confidence            875532 2234554 44455567754

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.49  E-value=0.089  Score=43.44  Aligned_cols=74  Identities=24%  Similarity=0.324  Sum_probs=47.0

Q ss_pred             CCCEEEEEcC--CchHHHHHHHHHHHhcCCcEEEEecCh--hhHHHH-HHcCCC-EE--EcCCCcc-cc-------ccCC
Q 025278          150 AGKSILVLGG--AGGVGTMVIQLAKHVFGASKVAATSST--AKLDLL-RSLGAD-LA--IDYTKEN-IE-------DLPE  213 (255)
Q Consensus       150 ~g~~VlI~ga--~g~~G~~a~~~a~~~~g~~vi~~~~~~--~~~~~~-~~~g~~-~v--~~~~~~~-~~-------~~~~  213 (255)
                      .+++++|+|+  ++++|.+.++.+.. .|++|++++++.  +..+.+ ++++.. ..  .|-.+.. ..       +..+
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~-~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g   84 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQE-QGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD   84 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHH-CCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            5689999998  79999998887776 499999887653  333333 344421 12  2222211 11       1124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|+++|.
T Consensus        85 ~iD~li~nAG~   95 (256)
T PRK07889         85 GLDGVVHSIGF   95 (256)
T ss_pred             CCcEEEEcccc
Confidence            79999999984

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.48  E-value=0.11  Score=43.64  Aligned_cols=94  Identities=21%  Similarity=0.192  Sum_probs=61.0

Q ss_pred             ccchhHHHHHHHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc
Q 025278          131 SLPLATETAYEGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE  209 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  209 (255)
                      ..|++....+..++..++ -.|++|+|+|-+.-+|.-.++++.. .++.|.+..+...                   ++.
T Consensus       138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-~~atVtv~hs~T~-------------------~l~  197 (285)
T PRK10792        138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-AGCTVTVCHRFTK-------------------NLR  197 (285)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-CCCeEEEEECCCC-------------------CHH
Confidence            346666556666665554 3699999999777799999999887 4888887765322                   233


Q ss_pred             ccCCCccEEEECCCCccceeeeeeccccCCceEEEEee
Q 025278          210 DLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       210 ~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      +..+.+|++|.++|.+....  ..+.+ ++-.++-+|.
T Consensus       198 ~~~~~ADIvi~avG~p~~v~--~~~vk-~gavVIDvGi  232 (285)
T PRK10792        198 HHVRNADLLVVAVGKPGFIP--GEWIK-PGAIVIDVGI  232 (285)
T ss_pred             HHHhhCCEEEEcCCCccccc--HHHcC-CCcEEEEccc
Confidence            33456677777777665322  34444 4555666663

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.47  E-value=0.11  Score=43.74  Aligned_cols=96  Identities=24%  Similarity=0.284  Sum_probs=61.1

Q ss_pred             ccchhHHHHHHHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc
Q 025278          131 SLPLATETAYEGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE  209 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  209 (255)
                      ..|++....+..++..++ -.|++|+|.|.+.-+|.-.+.++.. .+++|.......                   .+..
T Consensus       137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-~~atVt~~hs~t-------------------~~l~  196 (285)
T PRK14189        137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-AGATVTICHSKT-------------------RDLA  196 (285)
T ss_pred             CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-CCCEEEEecCCC-------------------CCHH
Confidence            345555445555555443 4789999999777779999999987 488888754322                   2233


Q ss_pred             ccCCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          210 DLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       210 ~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +..+..|+|+-++|.+....  ..+++ ++..++.+|...
T Consensus       197 ~~~~~ADIVV~avG~~~~i~--~~~ik-~gavVIDVGin~  233 (285)
T PRK14189        197 AHTRQADIVVAAVGKRNVLT--ADMVK-PGATVIDVGMNR  233 (285)
T ss_pred             HHhhhCCEEEEcCCCcCccC--HHHcC-CCCEEEEccccc
Confidence            33456777777777655322  35554 556666677543

>PRK09186 flagellin modification protein A; Provisional

Probab=95.46  E-value=0.042  Score=45.03  Aligned_cols=42  Identities=29%  Similarity=0.467  Sum_probs=35.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      .+++++|+|++|++|...+..+.. .|.+++++.+++++.+.+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~-~g~~v~~~~r~~~~~~~~   44 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILE-AGGIVIAADIDKEALNEL   44 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEecChHHHHHH
Confidence            578999999999999998888887 499999999888776544

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.44  E-value=0.047  Score=44.64  Aligned_cols=44  Identities=23%  Similarity=0.340  Sum_probs=36.8

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL  191 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~  191 (255)
                      ...++++++|+|++|++|...++.+.. .|++|++++++.++.+.
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~-~G~~Vi~~~r~~~~~~~   51 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYAR-HGATVILLGRTEEKLEA   51 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHH-CCCcEEEEeCCHHHHHH
Confidence            345788999999999999998888877 48999999998776543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.43  E-value=0.0051  Score=45.10  Aligned_cols=95  Identities=18%  Similarity=0.174  Sum_probs=48.3

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChh-hH--HHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccce
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTA-KL--DLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~-~~--~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~  228 (255)
                      +|.|+|++|-+|...++.+....+.+++.. +++++ ..  +...-.|....=-.-..+..+..+.+|++||++......
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~   81 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNPDAVY   81 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-HHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCChHHhH
Confidence            689999779999999999998667777755 45441 11  111111111000000022333344588888888443333


Q ss_pred             eeeeeccccCCceEEEEeecc
Q 025278          229 IVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       229 ~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .....+.  ..|.-+.+|..+
T Consensus        82 ~~~~~~~--~~g~~~ViGTTG  100 (124)
T PF01113_consen   82 DNLEYAL--KHGVPLVIGTTG  100 (124)
T ss_dssp             HHHHHHH--HHT-EEEEE-SS
T ss_pred             HHHHHHH--hCCCCEEEECCC
Confidence            3333333  246666666533

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=95.42  E-value=0.034  Score=46.03  Aligned_cols=70  Identities=20%  Similarity=0.209  Sum_probs=48.5

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCC-CccEEEECCCCcccee
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPE-KFDVVFDAVGKMCISI  229 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~-~~d~vid~~G~~~~~~  229 (255)
                      |+|+|++|-+|...++.++. .|..|++++|++.+.+.-......     ..+.+.+... ++|+|||-+|.+-...
T Consensus         1 IliTGgTGlIG~~L~~~L~~-~gh~v~iltR~~~~~~~~~~~~v~-----~~~~~~~~~~~~~DavINLAG~~I~~r   71 (297)
T COG1090           1 ILITGGTGLIGRALTARLRK-GGHQVTILTRRPPKASQNLHPNVT-----LWEGLADALTLGIDAVINLAGEPIAER   71 (297)
T ss_pred             CeEeccccchhHHHHHHHHh-CCCeEEEEEcCCcchhhhcCcccc-----ccchhhhcccCCCCEEEECCCCccccc
Confidence            58999999999999999988 599999999988766543221111     1111222222 7999999999665444

>PRK07201 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.074  Score=50.13  Aligned_cols=73  Identities=23%  Similarity=0.382  Sum_probs=49.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE-EE--cCCCcc-ccc-------cCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL-AI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~-v~--~~~~~~-~~~-------~~~~~  215 (255)
                      +++++|+||+|++|...+..+.. .|.+|+++++++++.+.+.    +.+... ++  |..+.. ..+       ..+.+
T Consensus       371 ~k~vlItGas~giG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  449 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAE-AGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHV  449 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            67899999999999998887777 4999999999888765542    223221 22  222211 111       12368


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|++.|.
T Consensus       450 d~li~~Ag~  458 (657)
T PRK07201        450 DYLVNNAGR  458 (657)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK06701 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.097  Score=44.15  Aligned_cols=37  Identities=30%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      -.+++++|+||+|++|...+..+.. .|.+|+++.+++
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~-~G~~V~l~~r~~   80 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAK-EGADIAIVYLDE   80 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence            3578999999999999998887777 499999888764

>PRK09135 pteridine reductase; Provisional

Probab=95.41  E-value=0.12  Score=42.10  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .+++++|+|++|.+|..++..+.. .|++|++++++.
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~-~g~~v~~~~r~~   40 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHA-AGYRVAIHYHRS   40 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCC
Confidence            457899999999999998888877 499999998753

>PRK12746 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.075  Score=43.52  Aligned_cols=40  Identities=25%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLD  190 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~  190 (255)
                      .+.+++|+|++|++|...++.+.. .|.++++. .++.++.+
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~-~G~~v~i~~~r~~~~~~   45 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLAN-DGALVAIHYGRNKQAAD   45 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHH
Confidence            357999999999999999988877 48888775 56665543

>PLN02214 cinnamoyl-CoA reductase

Probab=95.37  E-value=0.061  Score=46.54  Aligned_cols=75  Identities=20%  Similarity=0.320  Sum_probs=48.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHH--HHHHcC---CC-EEE--cCCC-ccccccCCCccEEE
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLD--LLRSLG---AD-LAI--DYTK-ENIEDLPEKFDVVF  219 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~--~~~~~g---~~-~v~--~~~~-~~~~~~~~~~d~vi  219 (255)
                      ..+++|+|+||+|.+|...+..+.. .|.+|++++++.++..  .++.+.   .. ..+  |..+ ..+.+..+++|+||
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLE-RGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            3577999999999999998888877 4899999988765422  122221   11 122  2212 12233345899999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .+++.
T Consensus        87 h~A~~   91 (342)
T PLN02214         87 HTASP   91 (342)
T ss_pred             EecCC
Confidence            99874

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=95.35  E-value=0.16  Score=42.86  Aligned_cols=61  Identities=23%  Similarity=0.334  Sum_probs=50.1

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe---cChhhHHHHHHcCCCEEEcCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT---SSTAKLDLLRSLGADLAIDYT  204 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~---~~~~~~~~~~~~g~~~v~~~~  204 (255)
                      +.+...+++|. .+|-+.+|..|...+.+|+. +|.+++++.   .+.+|++.++.+|+..+....
T Consensus        53 Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~-~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          53 AEKRGLLKPGG-TIVEATSGNTGIALAMVAAA-KGYRLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HHHcCCCCCCC-EEEEcCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            34566799999 55677799999999999998 599999885   488899999999998776554

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.35  E-value=0.07  Score=45.50  Aligned_cols=73  Identities=21%  Similarity=0.299  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHH---HHHHcC-CC---EEEcCC---CccccccCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLD---LLRSLG-AD---LAIDYT---KENIEDLPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~---~~~~~g-~~---~v~~~~---~~~~~~~~~~~d~vi  219 (255)
                      .+..|+|+||+|=+|...+..+.. +|.+|.+++|++++.+   .++++. +.   .++..+   ...+.+..+|+|.||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~-rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf   83 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLS-RGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF   83 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHh-CCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence            678999999999999999999988 5999999999887633   355554 22   222221   122334456899999


Q ss_pred             ECCC
Q 025278          220 DAVG  223 (255)
Q Consensus       220 d~~G  223 (255)
                      -++.
T Consensus        84 H~As   87 (327)
T KOG1502|consen   84 HTAS   87 (327)
T ss_pred             EeCc
Confidence            8766

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.33  E-value=0.12  Score=41.83  Aligned_cols=37  Identities=30%  Similarity=0.424  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      .+++++|+|++|++|...+..+.. .|++|+++.++++
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~-~G~~v~~~~~~~~   40 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAA-QGANVVINYASSE   40 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCch
Confidence            457899999999999999988887 4999977776544

>PRK09134 short chain dehydrogenase; Provisional

Probab=95.30  E-value=0.13  Score=42.33  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH-H---HcCCCE-EE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL-R---SLGADL-AI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~-~---~~g~~~-v~--~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+||+|++|...++.+.. .|.+++++.+ +.++.+.+ +   +.+... .+  |..+.. ..+       ..+
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   86 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAA-HGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG   86 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467999999999999998887776 4888987765 34444322 2   224321 22  322211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|.+.|.
T Consensus        87 ~iD~vi~~ag~   97 (258)
T PRK09134         87 PITLLVNNASL   97 (258)
T ss_pred             CCCEEEECCcC
Confidence            68999999984

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.29  E-value=0.082  Score=42.33  Aligned_cols=72  Identities=24%  Similarity=0.259  Sum_probs=45.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-hHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-KLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      .|++|+|.| .|.+|..-++.+... |++|++++.+.. .++.+.+.|--..+.. +.. .....++|+||-++|.+
T Consensus         8 ~gk~vlVvG-gG~va~rk~~~Ll~~-ga~VtVvsp~~~~~l~~l~~~~~i~~~~~-~~~-~~dl~~~~lVi~at~d~   80 (205)
T TIGR01470         8 EGRAVLVVG-GGDVALRKARLLLKA-GAQLRVIAEELESELTLLAEQGGITWLAR-CFD-ADILEGAFLVIAATDDE   80 (205)
T ss_pred             CCCeEEEEC-cCHHHHHHHHHHHHC-CCEEEEEcCCCCHHHHHHHHcCCEEEEeC-CCC-HHHhCCcEEEEECCCCH
Confidence            467999999 899999988888884 999998876443 3333333331112211 111 11234677777777765

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=95.29  E-value=0.26  Score=39.46  Aligned_cols=98  Identities=15%  Similarity=0.028  Sum_probs=59.0

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE--EEcCCCccccccCCCcc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL--AIDYTKENIEDLPEKFD  216 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~--v~~~~~~~~~~~~~~~d  216 (255)
                      +...+++++++||=.| +| .|..+..+++.  ..+++.++.+++..+.++    +++.+.  +...+........+.+|
T Consensus        71 ~~~l~~~~~~~VLeiG-~G-sG~~t~~la~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  146 (212)
T PRK00312         71 TELLELKPGDRVLEIG-TG-SGYQAAVLAHL--VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFD  146 (212)
T ss_pred             HHhcCCCCCCEEEEEC-CC-ccHHHHHHHHH--hCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcC
Confidence            3556788999999998 44 36666666665  358999999988776664    334322  22222111111124699


Q ss_pred             EEEECCCCccceeeeeeccccCCceEEEE
Q 025278          217 VVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       217 ~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      +|+-..........+...++ ++|+++..
T Consensus       147 ~I~~~~~~~~~~~~l~~~L~-~gG~lv~~  174 (212)
T PRK00312        147 RILVTAAAPEIPRALLEQLK-EGGILVAP  174 (212)
T ss_pred             EEEEccCchhhhHHHHHhcC-CCcEEEEE
Confidence            98865544433444556666 78887653

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.28  E-value=0.15  Score=42.79  Aligned_cols=94  Identities=16%  Similarity=0.224  Sum_probs=58.8

Q ss_pred             ccchhHHHHHHHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc
Q 025278          131 SLPLATETAYEGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE  209 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  209 (255)
                      ..|++....+..++..++ -.|++|+|.|.+.-+|.-.+.++.. .++.|.+.......                   ..
T Consensus       143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-~~atVtv~hs~T~~-------------------l~  202 (287)
T PRK14176        143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-RNATVSVCHVFTDD-------------------LK  202 (287)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-CCCEEEEEeccCCC-------------------HH
Confidence            346665555556665554 4799999999777799999999987 48888777643222                   22


Q ss_pred             ccCCCccEEEECCCCccceeeeeeccccCCceEEEEee
Q 025278          210 DLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       210 ~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      +..+.+|++|.++|.+...  -..+.+ ++-.++-+|.
T Consensus       203 ~~~~~ADIvv~AvG~p~~i--~~~~vk-~gavVIDvGi  237 (287)
T PRK14176        203 KYTLDADILVVATGVKHLI--KADMVK-EGAVIFDVGI  237 (287)
T ss_pred             HHHhhCCEEEEccCCcccc--CHHHcC-CCcEEEEecc
Confidence            2234566666666655432  233444 4455555655

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.26  E-value=0.038  Score=42.45  Aligned_cols=68  Identities=25%  Similarity=0.288  Sum_probs=45.7

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      .+|.++| .|.+|...+.-+... |.+|.+.++++++.+.+.+.|+..+ +    +..+..+..|+||-|+....
T Consensus         2 ~~Ig~IG-lG~mG~~~a~~L~~~-g~~v~~~d~~~~~~~~~~~~g~~~~-~----s~~e~~~~~dvvi~~v~~~~   69 (163)
T PF03446_consen    2 MKIGFIG-LGNMGSAMARNLAKA-GYEVTVYDRSPEKAEALAEAGAEVA-D----SPAEAAEQADVVILCVPDDD   69 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHHHHT-TTEEEEEESSHHHHHHHHHTTEEEE-S----SHHHHHHHBSEEEE-SSSHH
T ss_pred             CEEEEEc-hHHHHHHHHHHHHhc-CCeEEeeccchhhhhhhHHhhhhhh-h----hhhhHhhcccceEeecccch
Confidence            3688999 999999988877774 9999999999999998887775332 2    11222234566666666433

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07574 formate dehydrogenase; Provisional

Probab=95.25  E-value=0.057  Score=47.47  Aligned_cols=67  Identities=19%  Similarity=0.234  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++....+..+++|....     .++.+..+..|+|+-+..
T Consensus       191 ~gktVGIvG-~G~IG~~vA~~l~~f-G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell~~aDvV~l~lP  257 (385)
T PRK07574        191 EGMTVGIVG-AGRIGLAVLRRLKPF-DVKLHYTDRHRLPEEVEQELGLTYH-----VSFDSLVSVCDVVTIHCP  257 (385)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEECCCCCchhhHhhcCceec-----CCHHHHhhcCCEEEEcCC
Confidence            578999999 999999999999985 9999999987644444445554211     123444567788888776

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.24  E-value=0.0087  Score=53.78  Aligned_cols=43  Identities=23%  Similarity=0.425  Sum_probs=36.2

Q ss_pred             HhcccCCCCEEE----EEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          144 ERSAFSAGKSIL----VLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       144 ~~~~~~~g~~Vl----I~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      ...+.++|++++    |+||+|++|.+++|+++.+ |++|+.+...+.
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~-g~~v~~~~~~~~   73 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGL-GYDVVANNDGGL   73 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhC-CCeeeecCcccc
Confidence            356678889888    8888999999999999996 999998766554

>PRK07577 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.062  Score=43.41  Aligned_cols=69  Identities=17%  Similarity=0.308  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC-EEEcCCCcc-cccc------CCCccEEEEC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD-LAIDYTKEN-IEDL------PEKFDVVFDA  221 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~-~v~~~~~~~-~~~~------~~~~d~vid~  221 (255)
                      .+++++|+|++|++|...++.+.. .|.+|+++.++.++.     +... ...|..+.. ..+.      ..++|++|.+
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~-~G~~v~~~~r~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~   75 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLAN-LGHQVIGIARSAIDD-----FPGELFACDLADIEQTAATLAQINEIHPVDAIVNN   75 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHH-CCCEEEEEeCCcccc-----cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEEC
Confidence            367899999999999998888877 499999998876541     1111 112322221 1111      1268999999


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      .|.
T Consensus        76 ag~   78 (234)
T PRK07577         76 VGI   78 (234)
T ss_pred             CCC
Confidence            884

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=95.21  E-value=0.059  Score=44.38  Aligned_cols=101  Identities=21%  Similarity=0.242  Sum_probs=60.6

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHH----HcCCCE--EE-cCCC--cccc-cc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLR----SLGADL--AI-DYTK--ENIE-DL  211 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~----~~g~~~--v~-~~~~--~~~~-~~  211 (255)
                      +....++||++|+=.| + |.|.++..+++..+ ..+|+..+.++++.+.++    .+|...  .+ +.+-  +.+. +.
T Consensus        33 ~~~l~i~pG~~VlEaG-t-GSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~  110 (247)
T PF08704_consen   33 LMRLDIRPGSRVLEAG-T-GSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL  110 (247)
T ss_dssp             HHHTT--TT-EEEEE----TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred             HHHcCCCCCCEEEEec-C-CcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence            4577899999998776 4 44888888888763 368999999999888774    455431  12 2211  1121 11


Q ss_pred             CCCccEEEECCC-Cccceeeeeecc-ccCCceEEEEe
Q 025278          212 PEKFDVVFDAVG-KMCISIVYQKCD-KFQEKSLINFG  246 (255)
Q Consensus       212 ~~~~d~vid~~G-~~~~~~~~~~~~-~~~~G~~v~~G  246 (255)
                      ...+|.||==.. .......+.+.+ + ++|+++.|.
T Consensus       111 ~~~~DavfLDlp~Pw~~i~~~~~~L~~-~gG~i~~fs  146 (247)
T PF08704_consen  111 ESDFDAVFLDLPDPWEAIPHAKRALKK-PGGRICCFS  146 (247)
T ss_dssp             TTSEEEEEEESSSGGGGHHHHHHHE-E-EEEEEEEEE
T ss_pred             cCcccEEEEeCCCHHHHHHHHHHHHhc-CCceEEEEC
Confidence            246898884444 444555556666 5 789998874

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.20  E-value=0.12  Score=43.37  Aligned_cols=94  Identities=21%  Similarity=0.258  Sum_probs=57.5

Q ss_pred             ccchhHHHHHHHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc
Q 025278          131 SLPLATETAYEGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE  209 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  209 (255)
                      ..|++....+..++..++ -.|++|+|.|.+..+|.-.+.++.. .++.|.+.......++                   
T Consensus       136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-~gAtVtv~hs~t~~l~-------------------  195 (285)
T PRK14191        136 FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-AGASVSVCHILTKDLS-------------------  195 (285)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-CCCEEEEEeCCcHHHH-------------------
Confidence            346665555555555444 3699999999777999999999987 4898887754332221                   


Q ss_pred             ccCCCccEEEECCCCccceeeeeeccccCCceEEEEee
Q 025278          210 DLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       210 ~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      +..+..|+|+-++|.+...  -..+.+ ++..++-+|.
T Consensus       196 ~~~~~ADIvV~AvG~p~~i--~~~~vk-~GavVIDvGi  230 (285)
T PRK14191        196 FYTQNADIVCVGVGKPDLI--KASMVK-KGAVVVDIGI  230 (285)
T ss_pred             HHHHhCCEEEEecCCCCcC--CHHHcC-CCcEEEEeec
Confidence            2223456666666655432  133333 4455555554

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=95.19  E-value=0.13  Score=42.35  Aligned_cols=74  Identities=23%  Similarity=0.306  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-hhHHHH----HHcCCCE-E--EcCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLDLL----RSLGADL-A--IDYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-~~~~~~----~~~g~~~-v--~~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+||+|++|...++.+.. .|++++++.++. ++.+.+    ++.+... .  .|..+.. ..+       ...
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~-~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g   84 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGK-EKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFG   84 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999988877 489888877643 333222    2334321 2  2332221 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|.+.|.
T Consensus        85 ~id~lv~~ag~   95 (261)
T PRK08936         85 TLDVMINNAGI   95 (261)
T ss_pred             CCCEEEECCCC
Confidence            68999999984

>PLN03139 formate dehydrogenase; Provisional

Probab=95.18  E-value=0.049  Score=47.86  Aligned_cols=67  Identities=24%  Similarity=0.374  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      .|++|.|+| .|.+|...++.++.+ |.++++.+++..+.+..++.|+...     .++.+.....|+|+-++.
T Consensus       198 ~gktVGIVG-~G~IG~~vA~~L~af-G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~~sDvV~l~lP  264 (386)
T PLN03139        198 EGKTVGTVG-AGRIGRLLLQRLKPF-NCNLLYHDRLKMDPELEKETGAKFE-----EDLDAMLPKCDVVVINTP  264 (386)
T ss_pred             CCCEEEEEe-ecHHHHHHHHHHHHC-CCEEEEECCCCcchhhHhhcCceec-----CCHHHHHhhCCEEEEeCC
Confidence            578999999 999999999999985 9999999887544444555554321     123444456788887766

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.17  E-value=0.018  Score=41.94  Aligned_cols=80  Identities=24%  Similarity=0.230  Sum_probs=48.5

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-hHHHHH-HcC-----CCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-KLDLLR-SLG-----ADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-~~~~~~-~~g-----~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      +|.|.||+|-+|...++++......+++.+..++. .-+.+. .+.     .+..+..  .+... ..++|+||.|++..
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~Dvvf~a~~~~   77 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADPEE-LSDVDVVFLALPHG   77 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSGHH-HTTESEEEE-SCHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cchhH-hhcCCEEEecCchh
Confidence            58999999999999999998866677776654433 222222 221     1222221  12222 26899999999976


Q ss_pred             cceeeeeecc
Q 025278          226 CISIVYQKCD  235 (255)
Q Consensus       226 ~~~~~~~~~~  235 (255)
                      .+........
T Consensus        78 ~~~~~~~~~~   87 (121)
T PF01118_consen   78 ASKELAPKLL   87 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6555554444

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=95.15  E-value=0.15  Score=41.34  Aligned_cols=72  Identities=25%  Similarity=0.322  Sum_probs=45.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH-HH---cCCC-EE--EcCCCcc-cc-------ccCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL-RS---LGAD-LA--IDYTKEN-IE-------DLPEKF  215 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~-~~---~g~~-~v--~~~~~~~-~~-------~~~~~~  215 (255)
                      ++++|+|++|++|...+..+.. .|++++++.+ ++++.+.. .+   .+.. ..  .|..+.. ..       +..+.+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAK-DGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI   79 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999998888877 4899988877 44443322 22   2211 12  2222211 11       112468


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.+.|.
T Consensus        80 d~vi~~ag~   88 (242)
T TIGR01829        80 DVLVNNAGI   88 (242)
T ss_pred             cEEEECCCC
Confidence            999999984

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=95.14  E-value=0.13  Score=43.77  Aligned_cols=64  Identities=27%  Similarity=0.354  Sum_probs=53.0

Q ss_pred             HHHHH----HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe---cChhhHHHHHHcCCCEEEcC
Q 025278          139 AYEGL----ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT---SSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       139 a~~~l----~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~---~~~~~~~~~~~~g~~~v~~~  203 (255)
                      ||..+    ....+.||.++||-.-+|..|...+.+++. .|.+++++.   .+.||...++.+|+..+...
T Consensus        87 a~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~-~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp  157 (362)
T KOG1252|consen   87 AWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAAL-RGYKCIITMPEKMSKEKRILLRALGAEIILTP  157 (362)
T ss_pred             HHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHH-cCceEEEEechhhhHHHHHHHHHcCCEEEecC
Confidence            55554    357799999999999999999999999988 599999885   46788889999999876543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.14  E-value=0.063  Score=42.21  Aligned_cols=96  Identities=21%  Similarity=0.199  Sum_probs=54.6

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHh-cCCcEEEEecChhhHHHHHHcCCCEE-EcCCCccc-c----cc-CCCccE
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHV-FGASKVAATSSTAKLDLLRSLGADLA-IDYTKENI-E----DL-PEKFDV  217 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~-~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~~-~----~~-~~~~d~  217 (255)
                      ..+++|++||.+| +|+-+. +..+++.. ...++++++.++++    +..+.+.+ .|..+.+. .    .. .+++|+
T Consensus        28 ~~i~~g~~VLDiG-~GtG~~-~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~  101 (188)
T TIGR00438        28 KLIKPGDTVLDLG-AAPGGW-SQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV  101 (188)
T ss_pred             cccCCCCEEEEec-CCCCHH-HHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence            5578999999999 666554 44444443 24679999998764    11233322 12222111 0    11 246999


Q ss_pred             EEE-C----CCC------------ccceeeeeeccccCCceEEEEeec
Q 025278          218 VFD-A----VGK------------MCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       218 vid-~----~G~------------~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      |+. .    .|.            ......+.+.++ ++|+++.....
T Consensus       102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~~~  148 (188)
T TIGR00438       102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLK-PKGNFVVKVFQ  148 (188)
T ss_pred             EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEcc
Confidence            995 3    222            122333456666 89999986543

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=95.13  E-value=0.055  Score=43.58  Aligned_cols=44  Identities=30%  Similarity=0.448  Sum_probs=35.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL  195 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~  195 (255)
                      |+++++.|++|++|+.....+.. .+.++.+++.+.|+.+...+|
T Consensus         5 GKna~vtggagGIGl~~sk~Ll~-kgik~~~i~~~~En~~a~akL   48 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKALLE-KGIKVLVIDDSEENPEAIAKL   48 (261)
T ss_pred             CceEEEecCCchhhHHHHHHHHH-cCchheeehhhhhCHHHHHHH
Confidence            89999999999999998777776 599999998777776655444

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.13  E-value=0.044  Score=48.03  Aligned_cols=75  Identities=16%  Similarity=0.144  Sum_probs=47.5

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G  223 (255)
                      +..+++|+|+|++|-+|..++..+... |.+|+++++..........++...+ .|..+. .+.....++|+||.+++
T Consensus        18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~-G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa   94 (370)
T PLN02695         18 PSEKLRICITGAGGFIASHIARRLKAE-GHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA   94 (370)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHhC-CCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence            346789999999999999999999884 8999999875432110011122211 122211 12223457899999986

>PLN02928 oxidoreductase family protein

Probab=95.11  E-value=0.06  Score=46.75  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .|+++.|+| .|.+|..+++.++.+ |.+|++.+++.
T Consensus       158 ~gktvGIiG-~G~IG~~vA~~l~af-G~~V~~~dr~~  192 (347)
T PLN02928        158 FGKTVFILG-YGAIGIELAKRLRPF-GVKLLATRRSW  192 (347)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhC-CCEEEEECCCC
Confidence            578999999 999999999999985 99999998863

>PLN00198 anthocyanidin reductase; Provisional

Probab=95.11  E-value=0.093  Score=45.15  Aligned_cols=73  Identities=25%  Similarity=0.354  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH---HHc---CCCEEE--cCCCc-cccccCCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL---RSL---GADLAI--DYTKE-NIEDLPEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~---~~~---g~~~v~--~~~~~-~~~~~~~~~d~vid  220 (255)
                      .+++|+|+||+|.+|...+..+... |.+|+++.++.++....   ..+   +.-.++  |-.+. ...+..+++|+||.
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   86 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQK-GYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH   86 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence            4689999999999999999888874 88998887765443221   111   111222  22222 12233457899999


Q ss_pred             CCC
Q 025278          221 AVG  223 (255)
Q Consensus       221 ~~G  223 (255)
                      +++
T Consensus        87 ~A~   89 (338)
T PLN00198         87 VAT   89 (338)
T ss_pred             eCC
Confidence            987

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=95.10  E-value=0.056  Score=44.18  Aligned_cols=73  Identities=27%  Similarity=0.372  Sum_probs=49.0

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCE-E--EcCCCcc-c-------cccCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADL-A--IDYTKEN-I-------EDLPEKF  215 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~-v--~~~~~~~-~-------~~~~~~~  215 (255)
                      ++++||+|++|.+|...+..+... |.+|+++++++++.+.+.+    .+... .  .|..+.. +       .+..+++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   79 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAA-GANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL   79 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            358999999999999998887774 8999999998877655432    23221 1  2322221 1       1113468


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.+.|.
T Consensus        80 d~vi~~a~~   88 (255)
T TIGR01963        80 DILVNNAGI   88 (255)
T ss_pred             CEEEECCCC
Confidence            999998874

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=95.09  E-value=0.055  Score=46.88  Aligned_cols=74  Identities=20%  Similarity=0.256  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcC--CCE-EE--cCCCc-cccccCC--CccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLG--ADL-AI--DYTKE-NIEDLPE--KFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g--~~~-v~--~~~~~-~~~~~~~--~~d~vid  220 (255)
                      .+++|||+||+|.+|..++..+... |.+|+++++++...... +.++  ... .+  |-.+. .+.+..+  ++|+||.
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLEL-GAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHC-CCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence            4689999999999999999888874 89999998766543222 2222  111 12  22211 1112122  5799999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      +++.
T Consensus        82 ~A~~   85 (349)
T TIGR02622        82 LAAQ   85 (349)
T ss_pred             CCcc
Confidence            9883

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.09  E-value=0.21  Score=37.38  Aligned_cols=54  Identities=26%  Similarity=0.298  Sum_probs=39.1

Q ss_pred             cchhHHHHHHHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          132 LPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       132 l~~~~~ta~~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      +|+.....+..++..+ --.|++|+|+|.+..+|.-.+.++.. .++.|....+..
T Consensus         8 ~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~-~gatV~~~~~~t   62 (140)
T cd05212           8 VSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQR-DGATVYSCDWKT   62 (140)
T ss_pred             cccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHH-CCCEEEEeCCCC
Confidence            4444443444454443 34789999999999999999999887 489888887543

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07023 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.065  Score=43.67  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=30.6

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK  188 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~  188 (255)
                      .+++|+|++|++|...++.+.. .|+++++++++.++
T Consensus         2 ~~vlItGasggiG~~ia~~l~~-~G~~v~~~~r~~~~   37 (243)
T PRK07023          2 VRAIVTGHSRGLGAALAEQLLQ-PGIAVLGVARSRHP   37 (243)
T ss_pred             ceEEEecCCcchHHHHHHHHHh-CCCEEEEEecCcch
Confidence            3699999999999998888877 49999999887654

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.06  E-value=0.12  Score=42.16  Aligned_cols=36  Identities=28%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .+++++|+|++|++|...+..+.. .|.+|++++++.
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~-~G~~v~~~~~~~   42 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVE-AGAKVIGFDQAF   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEecch
Confidence            468999999999999998887777 499999998876

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=95.04  E-value=0.19  Score=45.70  Aligned_cols=70  Identities=14%  Similarity=0.315  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      .+++++|+| +|++|.+++..+... |+++++..+++++.+.+ ++++.. .++..+  ... ...+|+||+|+...
T Consensus       331 ~~k~vlIiG-aGgiG~aia~~L~~~-G~~V~i~~R~~~~~~~la~~~~~~-~~~~~~--~~~-l~~~DiVInatP~g  401 (477)
T PRK09310        331 NNQHVAIVG-AGGAAKAIATTLARA-GAELLIFNRTKAHAEALASRCQGK-AFPLES--LPE-LHRIDIIINCLPPS  401 (477)
T ss_pred             CCCEEEEEc-CcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccc-eechhH--hcc-cCCCCEEEEcCCCC
Confidence            567999999 799999998888874 88888888888877655 344322 222111  111 24789999998743

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.04  E-value=0.17  Score=40.87  Aligned_cols=74  Identities=18%  Similarity=0.184  Sum_probs=47.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecCh----------hhHHHHHHcCCCEEEcC----CCccccccCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSST----------AKLDLLRSLGADLAIDY----TKENIEDLPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~----------~~~~~~~~~g~~~v~~~----~~~~~~~~~~  213 (255)
                      -.|.+|+|.| .|.+|..+++.+... |.+++.+ |.+.          +.++..++.+....+..    +.+.+.  ..
T Consensus        21 l~g~~vaIqG-fGnVG~~~a~~L~~~-G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~--~~   96 (217)
T cd05211          21 LEGLTVAVQG-LGNVGWGLAKKLAEE-GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAIL--GL   96 (217)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHc-CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccce--ec
Confidence            3688999999 999999999999996 7777755 5665          56666655542221111    001111  12


Q ss_pred             CccEEEECCCCcc
Q 025278          214 KFDVVFDAVGKMC  226 (255)
Q Consensus       214 ~~d~vid~~G~~~  226 (255)
                      .+|+++.|+....
T Consensus        97 ~~DVlipaA~~~~  109 (217)
T cd05211          97 DVDIFAPCALGNV  109 (217)
T ss_pred             cccEEeeccccCc
Confidence            6788888877543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK07985 oxidoreductase; Provisional

Probab=95.04  E-value=0.13  Score=43.45  Aligned_cols=74  Identities=19%  Similarity=0.223  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh--hhHHHH----HHcCCCE-E--EcCCCcc-cc-------ccC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST--AKLDLL----RSLGADL-A--IDYTKEN-IE-------DLP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~--~~~~~~----~~~g~~~-v--~~~~~~~-~~-------~~~  212 (255)
                      .+++++|+||++++|...++.+.. .|++|+++.++.  ++.+.+    ++.+... .  .|..+.. ..       +..
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~-~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAR-EGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHH-CCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            567999999999999998888887 499998876532  233322    2334322 1  2222211 11       112


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|+++.+.|.
T Consensus       127 g~id~lv~~Ag~  138 (294)
T PRK07985        127 GGLDIMALVAGK  138 (294)
T ss_pred             CCCCEEEECCCC
Confidence            468999999884

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.01  E-value=0.16  Score=41.60  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      ++++|+|++|++|...+..+.. .|+++++++++.
T Consensus         3 k~vlItG~sg~iG~~la~~L~~-~g~~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAA-AGFDLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHH-CCCEEEEEecCc
Confidence            5799999999999998888887 499999988754

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=94.98  E-value=0.14  Score=44.12  Aligned_cols=97  Identities=24%  Similarity=0.165  Sum_probs=60.1

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHH-HHHcCCCEEEcCCC-------------ccccccCCCccEE
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDL-LRSLGADLAIDYTK-------------ENIEDLPEKFDVV  218 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~-~~~~g~~~v~~~~~-------------~~~~~~~~~~d~v  218 (255)
                      |.|.| .|.+|...+..+......+++++ +.++++.+. ++.+|.+.+.....             .++.+...++|+|
T Consensus         1 VaInG-~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV   79 (333)
T TIGR01546         1 VGVNG-YGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV   79 (333)
T ss_pred             CEEEC-CcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence            46888 99999988877665456788866 445554444 45677665431110             1223334589999


Q ss_pred             EECCCCccceeeeeeccccCCceEEEEeeccCCC
Q 025278          219 FDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEV  252 (255)
Q Consensus       219 id~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~  252 (255)
                      ++|+|............+ .+-+.++.|....++
T Consensus        80 ve~Tp~~~~~~na~~~~~-~GakaVl~~~p~~~~  112 (333)
T TIGR01546        80 VDATPGGIGAKNKPLYEK-AGVKAIFQGGEKAEV  112 (333)
T ss_pred             EECCCCCCChhhHHHHHh-CCcCEEEECCCCCCC
Confidence            999996665555444443 344567777776654

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=94.96  E-value=0.035  Score=42.10  Aligned_cols=97  Identities=16%  Similarity=0.193  Sum_probs=58.0

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ec--ChhhHHHHHHcC-------CCE-------EEcCCC------cccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA-TS--STAKLDLLRSLG-------ADL-------AIDYTK------ENIE  209 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~--~~~~~~~~~~~g-------~~~-------v~~~~~------~~~~  209 (255)
                      +|.|.| -|-+|..+...+......+++++ +.  +.+.+..+.++.       .+.       +++...      .+..
T Consensus         2 kVgING-fGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp~   80 (151)
T PF00044_consen    2 KVGING-FGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDPE   80 (151)
T ss_dssp             EEEEES-TSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSGG
T ss_pred             EEEEEC-CCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhhc
Confidence            588999 99999999999886556677766 33  345555554431       111       111110      0000


Q ss_pred             cc---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          210 DL---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       210 ~~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      +.   ..++|+|+||+|.......+..-+. .+-+=|+++.++..
T Consensus        81 ~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~-~GakkViisap~~~  124 (151)
T PF00044_consen   81 EIPWGELGVDIVVECTGKFRTRENAEAHLD-AGAKKVIISAPSKD  124 (151)
T ss_dssp             GSTHHHHTESEEEETSSSTHSHHHHTHHHH-TTESEEEESSS-SS
T ss_pred             ccccccccccEEEeccccceeccccccccc-ccccceeecccccc
Confidence            00   1289999999997765555544444 35667777777665

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=94.96  E-value=0.16  Score=42.04  Aligned_cols=99  Identities=19%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC-EEEcCCCccccccCCCccEEEEC
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD-LAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      +....+.++++||=+| +| .|..+..+++...+.++++++.+++-++.+++.-.. .++..+...+. ....+|+|+-.
T Consensus        24 l~~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~  100 (258)
T PRK01683         24 LARVPLENPRYVVDLG-CG-PGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFAN  100 (258)
T ss_pred             HhhCCCcCCCEEEEEc-cc-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEc
Confidence            3455677889999998 44 477788888775578999999999988888654221 22322222221 12479999865


Q ss_pred             CCCc------cceeeeeeccccCCceEEEE
Q 025278          222 VGKM------CISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       222 ~G~~------~~~~~~~~~~~~~~G~~v~~  245 (255)
                      ..-.      .....+.+.++ ++|+++..
T Consensus       101 ~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~  129 (258)
T PRK01683        101 ASLQWLPDHLELFPRLVSLLA-PGGVLAVQ  129 (258)
T ss_pred             cChhhCCCHHHHHHHHHHhcC-CCcEEEEE
Confidence            4311      22233345566 78988774

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.94  E-value=0.049  Score=47.08  Aligned_cols=77  Identities=25%  Similarity=0.410  Sum_probs=47.7

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecCh---------------------hhH----HHHHHcCCCEEEcC-
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSST---------------------AKL----DLLRSLGADLAIDY-  203 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~---------------------~~~----~~~~~~g~~~v~~~-  203 (255)
                      ..+|+|.| +|++|..++..+..+ |. ++.++|.+.                     .|.    +.+++++.+..+.. 
T Consensus        24 ~~~VlIiG-~GglGs~va~~La~a-Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         24 EKHVLIVG-AGALGAANAEALVRA-GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            46799999 899999988888776 65 666677653                     122    22344443322211 


Q ss_pred             ----CCccccccCCCccEEEECCCCcccee
Q 025278          204 ----TKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       204 ----~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                          ...+..+..+++|+||||+....+..
T Consensus       102 ~~~~~~~~~~~~~~~~DlVid~~D~~~~r~  131 (338)
T PRK12475        102 VTDVTVEELEELVKEVDLIIDATDNFDTRL  131 (338)
T ss_pred             eccCCHHHHHHHhcCCCEEEEcCCCHHHHH
Confidence                11233444568999999998665433

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.92  E-value=0.076  Score=45.33  Aligned_cols=72  Identities=17%  Similarity=0.255  Sum_probs=54.2

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      .-.|++|.|+| .|.+|...++.++.. |.+|++.++.....+.++..|+.. .     +..+..+..|+|+-++..+.+
T Consensus        13 ~LkgKtVGIIG-~GsIG~amA~nL~d~-G~~ViV~~r~~~s~~~A~~~G~~v-~-----sl~Eaak~ADVV~llLPd~~t   84 (335)
T PRK13403         13 LLQGKTVAVIG-YGSQGHAQAQNLRDS-GVEVVVGVRPGKSFEVAKADGFEV-M-----SVSEAVRTAQVVQMLLPDEQQ   84 (335)
T ss_pred             hhCcCEEEEEe-EcHHHHHHHHHHHHC-cCEEEEEECcchhhHHHHHcCCEE-C-----CHHHHHhcCCEEEEeCCChHH
Confidence            34688999999 999999999999985 999998877655556667777632 1     344455678999988875433

>PRK07069 short chain dehydrogenase; Validated

Probab=94.89  E-value=0.12  Score=42.21  Aligned_cols=38  Identities=26%  Similarity=0.430  Sum_probs=31.1

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEEecC-hhhHHHH
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAATSS-TAKLDLL  192 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~-~~~~~~~  192 (255)
                      ++|+|++|++|...++.+.. .|++|++++++ .++++.+
T Consensus         2 ilVtG~~~~iG~~~a~~l~~-~G~~v~~~~r~~~~~~~~~   40 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAE-QGAKVFLTDINDAAGLDAF   40 (251)
T ss_pred             EEEECCCChHHHHHHHHHHH-CCCEEEEEeCCcchHHHHH
Confidence            79999999999998888877 49999999987 5555443

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=94.89  E-value=0.11  Score=45.94  Aligned_cols=97  Identities=20%  Similarity=0.302  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHH-HHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDL-LRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      -.+.+|||+| +|-+|.+++..+... | .++++.-|+.+|.+. ++++|+..+ ..+  +..+....+|+||-++|.+.
T Consensus       176 L~~~~vlvIG-AGem~~lva~~L~~~-g~~~i~IaNRT~erA~~La~~~~~~~~-~l~--el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         176 LKDKKVLVIG-AGEMGELVAKHLAEK-GVKKITIANRTLERAEELAKKLGAEAV-ALE--ELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             cccCeEEEEc-ccHHHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHhCCeee-cHH--HHHHhhhhCCEEEEecCCCc
Confidence            4678999999 899999988888874 6 556666788887654 578995432 221  22233457999999999775


Q ss_pred             ceeeeee---ccccCCc-eEEEEeeccC
Q 025278          227 ISIVYQK---CDKFQEK-SLINFGLFRQ  250 (255)
Q Consensus       227 ~~~~~~~---~~~~~~G-~~v~~G~~~~  250 (255)
                      -...-..   .++.+.. .++-+++++.
T Consensus       251 ~ii~~~~ve~a~~~r~~~livDiavPRd  278 (414)
T COG0373         251 PIITREMVERALKIRKRLLIVDIAVPRD  278 (414)
T ss_pred             cccCHHHHHHHHhcccCeEEEEecCCCC
Confidence            4333211   1111122 4677777765

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.88  E-value=0.29  Score=37.48  Aligned_cols=59  Identities=27%  Similarity=0.261  Sum_probs=37.7

Q ss_pred             hccchhHHHHHHHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH
Q 025278          130 ASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL  189 (255)
Q Consensus       130 a~l~~~~~ta~~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~  189 (255)
                      ..+|++....+..++..+ --.|++|+|.|.+..+|.-.+.++.. .++.|.......+.+
T Consensus        14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-~~atVt~~h~~T~~l   73 (160)
T PF02882_consen   14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-KGATVTICHSKTKNL   73 (160)
T ss_dssp             SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-TT-EEEEE-TTSSSH
T ss_pred             CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-CCCeEEeccCCCCcc
Confidence            344555555555565543 35789999999888999998888888 488888876654444

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PLN02650 dihydroflavonol-4-reductase

Probab=94.88  E-value=0.089  Score=45.57  Aligned_cols=73  Identities=21%  Similarity=0.276  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc----CC--C-EEE--cCCCc-cccccCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL----GA--D-LAI--DYTKE-NIEDLPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~----g~--~-~v~--~~~~~-~~~~~~~~~d~vi  219 (255)
                      ..++|||+||+|-+|...+..+.. .|.+|++++++.++......+    +.  . ..+  |..+. .+.+..+++|.||
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi   82 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLE-RGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF   82 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHH-CCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence            356899999999999998888887 499999988876554433221    11  1 112  22221 2233345789999


Q ss_pred             ECCC
Q 025278          220 DAVG  223 (255)
Q Consensus       220 d~~G  223 (255)
                      .+.+
T Consensus        83 H~A~   86 (351)
T PLN02650         83 HVAT   86 (351)
T ss_pred             EeCC
Confidence            9886

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.87  E-value=0.09  Score=45.41  Aligned_cols=66  Identities=27%  Similarity=0.322  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++.+.. ..++.+...      .++.+.....|+|+-++..
T Consensus       149 ~gktvgIiG-~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~-~~~~~~~~~------~~l~ell~~aDiV~l~lP~  214 (333)
T PRK13243        149 YGKTIGIIG-FGRIGQAVARRAKGF-GMRILYYSRTRKPE-AEKELGAEY------RPLEELLRESDFVSLHVPL  214 (333)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHC-CCEEEEECCCCChh-hHHHcCCEe------cCHHHHHhhCCEEEEeCCC
Confidence            578999999 999999999999985 99999998875443 233444321      1233444567888887763

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=94.86  E-value=0.11  Score=49.09  Aligned_cols=75  Identities=25%  Similarity=0.427  Sum_probs=53.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh---------------------hHHHHHHcCCCEEEcCCC--
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA---------------------KLDLLRSLGADLAIDYTK--  205 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~---------------------~~~~~~~~g~~~v~~~~~--  205 (255)
                      ..+++|+|+| +|+.|+.++..++.. |.+|++++.++.                     ..+.++++|.+..++..-  
T Consensus       191 ~~~k~VaIIG-aGpAGl~aA~~La~~-G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~  268 (652)
T PRK12814        191 KSGKKVAIIG-AGPAGLTAAYYLLRK-GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR  268 (652)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHC-CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccC
Confidence            4578999999 899999999999884 999999986543                     134556788766555421  


Q ss_pred             -ccccccCCCccEEEECCCCc
Q 025278          206 -ENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       206 -~~~~~~~~~~d~vid~~G~~  225 (255)
                       .........+|.||-++|..
T Consensus       269 dv~~~~~~~~~DaVilAtGa~  289 (652)
T PRK12814        269 DITLEELQKEFDAVLLAVGAQ  289 (652)
T ss_pred             ccCHHHHHhhcCEEEEEcCCC
Confidence             11222223599999999965

>PRK12744 short chain dehydrogenase; Provisional

Probab=94.86  E-value=0.19  Score=41.34  Aligned_cols=34  Identities=32%  Similarity=0.478  Sum_probs=28.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS  184 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~  184 (255)
                      .+++++|+|++|++|...+..+.. .|.+++++.+
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~-~G~~vv~i~~   40 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAA-QGAKAVAIHY   40 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHH-CCCcEEEEec
Confidence            467999999999999999988877 4899777754

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=94.85  E-value=0.19  Score=41.64  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=30.2

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHH
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLD  190 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~  190 (255)
                      .+++|+||++++|...++.+.. .|++|+++.+ ++++++
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~-~G~~V~~~~~~~~~~~~   40 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQ-EGYRVVLHYHRSAAAAS   40 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHh-CCCeEEEEcCCcHHHHH
Confidence            4789999999999998888877 4999998764 444443

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.85  E-value=0.21  Score=40.44  Aligned_cols=37  Identities=30%  Similarity=0.373  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      +.++++|+||+|.+|...+..+.. .|.+++++.++.+
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~-~g~~v~~~~~~~~   41 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLAR-AGADVVVHYRSDE   41 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCCCH
Confidence            356899999999999999988877 4888877665443

>PRK07041 short chain dehydrogenase; Provisional

Probab=94.84  E-value=0.14  Score=41.29  Aligned_cols=69  Identities=29%  Similarity=0.394  Sum_probs=45.3

Q ss_pred             EEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc--CCC-EEE--cCCCcc-ccc---cCCCccEEEECCCC
Q 025278          155 LVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL--GAD-LAI--DYTKEN-IED---LPEKFDVVFDAVGK  224 (255)
Q Consensus       155 lI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~--g~~-~v~--~~~~~~-~~~---~~~~~d~vid~~G~  224 (255)
                      +|+||+|++|...+..+.. .|.+++++++++++.+... ++  +.. +++  |..+.. ..+   ..+.+|++|.+.|.
T Consensus         1 lItGas~~iG~~~a~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~   79 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAA-EGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD   79 (230)
T ss_pred             CeecCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            5899999999998888877 4999999999877765542 22  221 222  222211 111   12468999999884

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.81  E-value=0.15  Score=45.88  Aligned_cols=71  Identities=28%  Similarity=0.436  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-hhH----HHHHHcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKL----DLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-~~~----~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      .+++|+|+| .|.+|+.++..+.. .|++|++++.++ +..    +.+++.|..... .+..+  +..+++|+||.++|.
T Consensus         4 ~~k~v~iiG-~g~~G~~~A~~l~~-~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~d~vv~~~g~   78 (450)
T PRK14106          4 KGKKVLVVG-AGVSGLALAKFLKK-LGAKVILTDEKEEDQLKEALEELGELGIELVL-GEYPE--EFLEGVDLVVVSPGV   78 (450)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCchHHHHHHHHHHHhcCCEEEe-CCcch--hHhhcCCEEEECCCC
Confidence            468999999 67799998888888 499999998864 222    333455654322 22111  223579999999984


Q ss_pred             c
Q 025278          225 M  225 (255)
Q Consensus       225 ~  225 (255)
                      .
T Consensus        79 ~   79 (450)
T PRK14106         79 P   79 (450)
T ss_pred             C
Confidence            3

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.80  E-value=0.1  Score=47.97  Aligned_cols=70  Identities=29%  Similarity=0.388  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      .+++++|+| +|++|.+++..+... |++++++.++.+|.+.+ ++++.. .+...+.. .......|++++|++
T Consensus       378 ~~k~vlIlG-aGGagrAia~~L~~~-G~~V~i~nR~~e~a~~la~~l~~~-~~~~~~~~-~~~~~~~diiINtT~  448 (529)
T PLN02520        378 AGKLFVVIG-AGGAGKALAYGAKEK-GARVVIANRTYERAKELADAVGGQ-ALTLADLE-NFHPEEGMILANTTS  448 (529)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHhCCc-eeeHhHhh-hhccccCeEEEeccc
Confidence            467899999 699999998888875 78988888988777665 455432 22221110 011235789998876

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=94.80  E-value=0.14  Score=45.94  Aligned_cols=72  Identities=19%  Similarity=0.215  Sum_probs=45.6

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-hHHHHHH-cCC--CEEEcCCCccccccCCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-KLDLLRS-LGA--DLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-~~~~~~~-~g~--~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      ++..+|+|+||+|-+|...+..+.. .|.+|+++++... +.+.... .+.  ...++.+.  ......++|+||.+++
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di--~~~~~~~~D~ViHlAa  193 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIG-RGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDV--VEPILLEVDQIYHLAC  193 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHH-CCCEEEEEeCCCCccHhHhhhhccCCceEEEECcc--ccccccCCCEEEECce
Confidence            4567999999999999999998887 4899999986432 1111111 110  11222211  1112357999999987

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.79  E-value=0.2  Score=40.89  Aligned_cols=74  Identities=23%  Similarity=0.365  Sum_probs=45.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH-HHcCCC-EEE--cCCCcc-cccc-------CC-Cc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL-RSLGAD-LAI--DYTKEN-IEDL-------PE-KF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~-~~~g~~-~v~--~~~~~~-~~~~-------~~-~~  215 (255)
                      .+++++|+||+|++|...+..+.. .|++++...+ ++++.+.+ .+++.. .++  |..+.. ..+.       .+ ++
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~-~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~i   82 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAR-EGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPI   82 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHH-CCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence            357899999999999998887776 4899987654 44444433 334322 122  222211 1111       12 39


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.+.|.
T Consensus        83 d~li~~ag~   91 (253)
T PRK08642         83 TTVVNNALA   91 (253)
T ss_pred             eEEEECCCc
Confidence            999999874

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=94.78  E-value=0.16  Score=41.18  Aligned_cols=72  Identities=19%  Similarity=0.310  Sum_probs=45.2

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHHH----HHcCCC-EEE--cCCCcc-ccc-------cCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLL----RSLGAD-LAI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~----~~~g~~-~v~--~~~~~~-~~~-------~~~~~  215 (255)
                      ++++|+||+|++|...+..+.. .|.+|+++ .+++++.+..    ++.+.. ..+  |..+.. ..+       ...++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i   80 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQ-EGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL   80 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence            4799999999999998888877 48888764 5665554332    233322 122  222221 111       12478


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.++|.
T Consensus        81 d~vi~~ag~   89 (247)
T PRK09730         81 AALVNNAGI   89 (247)
T ss_pred             CEEEECCCC
Confidence            999999984

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.77  E-value=0.21  Score=35.70  Aligned_cols=75  Identities=20%  Similarity=0.236  Sum_probs=54.2

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc---c-cCCCccEEEECCCCcccee
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE---D-LPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~---~-~~~~~d~vid~~G~~~~~~  229 (255)
                      |+|.| .|.+|...++.++. .+.++++++.++++.+.+++.|.. ++..+..+..   + ..+.++.++=+++......
T Consensus         1 vvI~G-~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~   77 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEGVE-VIYGDATDPEVLERAGIEKADAVVILTDDDEENL   77 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTTSE-EEES-TTSHHHHHHTTGGCESEEEEESSSHHHHH
T ss_pred             eEEEc-CCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhcccc-cccccchhhhHHhhcCccccCEEEEccCCHHHHH
Confidence            57888 89999999999998 577999999999999999988854 4444333322   1 1347899998887654443


Q ss_pred             ee
Q 025278          230 VY  231 (255)
Q Consensus       230 ~~  231 (255)
                      ..
T Consensus        78 ~~   79 (116)
T PF02254_consen   78 LI   79 (116)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02206 UDP-glucuronate decarboxylase

Probab=94.77  E-value=0.11  Score=46.67  Aligned_cols=71  Identities=18%  Similarity=0.279  Sum_probs=45.2

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-hHHHH-HHc---CCCEEEcCCCccccccCCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-KLDLL-RSL---GADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-~~~~~-~~~---g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      .++++|||+||+|-+|...++.+.. .|.+|+++++... +.+.. ..+   +.+ .++.+-  ......++|+||.+++
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~-~G~~V~~ld~~~~~~~~~~~~~~~~~~~~-~i~~D~--~~~~l~~~D~ViHlAa  192 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMA-RGDSVIVVDNFFTGRKENVMHHFSNPNFE-LIRHDV--VEPILLEVDQIYHLAC  192 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHH-CcCEEEEEeCCCccchhhhhhhccCCceE-EEECCc--cChhhcCCCEEEEeee
Confidence            3568999999999999999998888 4999998875322 11111 111   121 122111  1122347899999987

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.76  E-value=0.083  Score=43.67  Aligned_cols=71  Identities=23%  Similarity=0.218  Sum_probs=53.2

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEc-CCCc-cccccCCCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID-YTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~-~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      .+|||+||+|.+|...++.+... +.+|.+..|++++..... .+.+.+.. ..+. .+....+|+|.++.+++.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~   73 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL   73 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence            36899999999999999999984 999999999999988877 55554432 2221 222334688888887773

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=94.75  E-value=0.072  Score=45.56  Aligned_cols=66  Identities=20%  Similarity=0.223  Sum_probs=44.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++.++..     +.+...  ...++.+.....|+|+.+...
T Consensus       135 ~g~tvgIvG-~G~IG~~vA~~l~af-G~~V~~~~~~~~~~~-----~~~~~~--~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        135 EDFTIGILG-AGVLGSKVAQSLQTW-GFPLRCWSRSRKSWP-----GVQSFA--GREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCCCCCC-----Cceeec--ccccHHHHHhcCCEEEECCCC
Confidence            578999999 999999999999985 999999987654321     211111  112333444567777777663

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.73  E-value=0.17  Score=43.12  Aligned_cols=101  Identities=17%  Similarity=0.107  Sum_probs=60.9

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhc-CCcEEEEe--cChhhHHHHHH-cCCCE-------------EEcCC--------C-c
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVF-GASKVAAT--SSTAKLDLLRS-LGADL-------------AIDYT--------K-E  206 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~--~~~~~~~~~~~-~g~~~-------------v~~~~--------~-~  206 (255)
                      +|.|.| -|-+|..++..+.... ..+|+++.  .+++.++.+.+ -+..-             +++..        + .
T Consensus         3 kV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p~   81 (335)
T COG0057           3 KVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDPA   81 (335)
T ss_pred             EEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCChH
Confidence            689999 9999999999998854 37777773  45565555532 21111             11111        0 0


Q ss_pred             cccccCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC-CCC
Q 025278          207 NIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE-VPK  254 (255)
Q Consensus       207 ~~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~-~~~  254 (255)
                      ++.....++|+|+||+|.......+.+.+...+-+-|+++.++++ +++
T Consensus        82 ~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~  130 (335)
T COG0057          82 NLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVAT  130 (335)
T ss_pred             HCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccE
Confidence            000011278999999997665555554444223577888887775 554

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.72  E-value=0.2  Score=42.43  Aligned_cols=55  Identities=22%  Similarity=0.195  Sum_probs=40.1

Q ss_pred             ccchhHHHHHHHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          131 SLPLATETAYEGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .+|++....+..++..++ -.|++|.|+|.++.+|.-.+.++.. .|+.|++..+..
T Consensus       138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~-~gatVtv~~~~t  193 (301)
T PRK14194        138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQ-AHCSVTVVHSRS  193 (301)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHH-CCCEEEEECCCC
Confidence            346665555555554443 5799999999667999998888887 499999886543

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=94.70  E-value=0.2  Score=40.87  Aligned_cols=72  Identities=22%  Similarity=0.302  Sum_probs=44.6

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-cChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~~~  215 (255)
                      ++++|+|++|++|...++.+.. .|.+++++. +++++.+.+    +..+... .+  |..+.. ..+       ..+.+
T Consensus         3 k~ilItGas~giG~~la~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAA-RGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRL   81 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence            5899999999999998888877 488887764 455544332    2233222 22  222211 111       12468


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|.++|.
T Consensus        82 d~li~~ag~   90 (248)
T PRK06947         82 DALVNNAGI   90 (248)
T ss_pred             CEEEECCcc
Confidence            999999983

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=94.69  E-value=0.23  Score=40.40  Aligned_cols=74  Identities=28%  Similarity=0.397  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH----HHcCCCE-EEcCCCccccc----------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL----RSLGADL-AIDYTKENIED----------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~----~~~g~~~-v~~~~~~~~~~----------~~~  213 (255)
                      .+++++|+|++|++|...+..+.. .|.+++++.+ ++++.+..    ++.+.+. .+..+-.+..+          ..+
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~-~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQ-EGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG   83 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-cCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999998887777 4898887644 44443322    2333222 22222111111          013


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|.++|.
T Consensus        84 ~id~vi~~ag~   94 (247)
T PRK12935         84 KVDILVNNAGI   94 (247)
T ss_pred             CCCEEEECCCC
Confidence            58999999884

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.69  E-value=0.22  Score=40.63  Aligned_cols=74  Identities=18%  Similarity=0.360  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC-hhhHH----HHHHcCCC-EEE--cCCCcc-cc-------ccCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS-TAKLD----LLRSLGAD-LAI--DYTKEN-IE-------DLPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~-~~~~~----~~~~~g~~-~v~--~~~~~~-~~-------~~~~  213 (255)
                      .+++++|+||+|.+|...+.-+.. .|.+++...++ .++..    .+++.+.. ..+  |..+.. ..       +...
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAK-EGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG   83 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence            367999999999999998877666 48888776643 23222    22334432 122  222211 11       1124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|.+.|.
T Consensus        84 ~~d~vi~~ag~   94 (252)
T PRK06077         84 VADILVNNAGL   94 (252)
T ss_pred             CCCEEEECCCC
Confidence            78999999984

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=94.67  E-value=0.16  Score=43.95  Aligned_cols=93  Identities=22%  Similarity=0.089  Sum_probs=55.3

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-cChhhHHH-HHHcCCCEE---------EcCCC----ccccccCCCccE
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDL-LRSLGADLA---------IDYTK----ENIEDLPEKFDV  217 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~~~~~~~~-~~~~g~~~v---------~~~~~----~~~~~~~~~~d~  217 (255)
                      +|.|.| .|.+|...++.+......+++++. .++++.+. +++.|.+..         +....    .+..+...++|+
T Consensus         3 kVaI~G-~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          3 KVGVNG-YGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             EEEEEC-CCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            689999 599999988887765577888764 34444443 344553310         00000    112222357999


Q ss_pred             EEECCCCccceeeeeeccccCCceEEEEeec
Q 025278          218 VFDAVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       218 vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ||||++............+  .|.-+.+...
T Consensus        82 VIdaT~~~~~~e~a~~~~~--aGk~VI~~~~  110 (341)
T PRK04207         82 VVDATPGGVGAKNKELYEK--AGVKAIFQGG  110 (341)
T ss_pred             EEECCCchhhHHHHHHHHH--CCCEEEEcCC
Confidence            9999997766665555554  3554444443

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.66  E-value=0.093  Score=44.87  Aligned_cols=43  Identities=26%  Similarity=0.260  Sum_probs=37.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      -.|.+++|+|+++++|...+..+.. .|++|+...|+.++.+.+
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~-~Ga~Vv~~~R~~~~~~~~   75 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELAL-RGAHVVLACRNEERGEEA   75 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHh-CCCEEEEEeCCHHHHHHH
Confidence            4568999999999999998888877 489999999998777665

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.65  E-value=0.042  Score=46.41  Aligned_cols=40  Identities=18%  Similarity=0.275  Sum_probs=33.7

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR  193 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~  193 (255)
                      ++|.|+| +|.+|...++.+... |.+|++.++++++++.+.
T Consensus         2 ~~V~VIG-~G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~   41 (288)
T PRK09260          2 EKLVVVG-AGVMGRGIAYVFAVS-GFQTTLVDIKQEQLESAQ   41 (288)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHH
Confidence            4789999 899999988877764 999999999998877653

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=94.63  E-value=0.25  Score=39.96  Aligned_cols=42  Identities=24%  Similarity=0.314  Sum_probs=34.4

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      .+.++.+||+.| + |.|.-+..+|..  |.+|++++.++..++.+
T Consensus        34 ~~~~~~rvL~~g-C-G~G~da~~LA~~--G~~V~avD~s~~Ai~~~   75 (218)
T PRK13255         34 ALPAGSRVLVPL-C-GKSLDMLWLAEQ--GHEVLGVELSELAVEQF   75 (218)
T ss_pred             CCCCCCeEEEeC-C-CChHhHHHHHhC--CCeEEEEccCHHHHHHH
Confidence            445678999998 4 568999989873  99999999999887765

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=94.61  E-value=0.39  Score=38.81  Aligned_cols=103  Identities=21%  Similarity=0.123  Sum_probs=61.4

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHHcCC-------CEEEcCCCccccccCCCc
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRSLGA-------DLAIDYTKENIEDLPEKF  215 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~~g~-------~~v~~~~~~~~~~~~~~~  215 (255)
                      ......++.+|+-+| +|. |..+..+++... ..++++++.+++..+.+++.-.       -.++..+..+.....+.+
T Consensus        45 ~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  122 (239)
T PRK00216         45 KWLGVRPGDKVLDLA-CGT-GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSF  122 (239)
T ss_pred             HHhCCCCCCeEEEeC-CCC-CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCc
Confidence            344556788999998 666 888888888742 3899999999988877765311       111221111111112468


Q ss_pred             cEEEECCCC------ccceeeeeeccccCCceEEEEeecc
Q 025278          216 DVVFDAVGK------MCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       216 d~vid~~G~------~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      |+|+-..+-      ......+...++ ++|+++++....
T Consensus       123 D~I~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~~~~~  161 (239)
T PRK00216        123 DAVTIAFGLRNVPDIDKALREMYRVLK-PGGRLVILEFSK  161 (239)
T ss_pred             cEEEEecccccCCCHHHHHHHHHHhcc-CCcEEEEEEecC
Confidence            998753221      111223345566 789988876543

>PLN03075 nicotianamine synthase; Provisional

Probab=94.58  E-value=0.12  Score=43.66  Aligned_cols=95  Identities=20%  Similarity=0.126  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHh-cCCcEEEEecChhhHHHHHHcC-C----CE--EEc-CCCccccccCCCccEEE
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHV-FGASKVAATSSTAKLDLLRSLG-A----DL--AID-YTKENIEDLPEKFDVVF  219 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~-~g~~vi~~~~~~~~~~~~~~~g-~----~~--v~~-~~~~~~~~~~~~~d~vi  219 (255)
                      .+.++|+-+| +|+.++.++.+++.+ .+.+++.+|.+++..+.+++.- .    ..  .+. .+..+.....+++|+||
T Consensus       122 ~~p~~VldIG-cGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        122 GVPTKVAFVG-SGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCCEEEEEC-CCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence            4779999999 999999888777543 4668999999999888876532 1    11  111 11111111235799999


Q ss_pred             ECCC-------CccceeeeeeccccCCceEEEE
Q 025278          220 DAVG-------KMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       220 d~~G-------~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      -.+=       .........+.++ ++|.++.=
T Consensus       201 ~~ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr  232 (296)
T PLN03075        201 LAALVGMDKEEKVKVIEHLGKHMA-PGALLMLR  232 (296)
T ss_pred             EecccccccccHHHHHHHHHHhcC-CCcEEEEe
Confidence            7631       1122233355565 66665543

>PRK13984 putative oxidoreductase; Provisional

Probab=94.58  E-value=0.13  Score=48.19  Aligned_cols=76  Identities=21%  Similarity=0.344  Sum_probs=54.2

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh---------------------hhHHHHHHcCCCEEEcCCC-
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST---------------------AKLDLLRSLGADLAIDYTK-  205 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~---------------------~~~~~~~~~g~~~v~~~~~-  205 (255)
                      .+++++|+|+| +|..|+.++..++.. |.+++++++.+                     ...+.++++|.+..++..- 
T Consensus       280 ~~~~~~v~IIG-aG~aGl~aA~~L~~~-G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  357 (604)
T PRK13984        280 EKKNKKVAIVG-SGPAGLSAAYFLATM-GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVG  357 (604)
T ss_pred             ccCCCeEEEEC-CCHHHHHHHHHHHHC-CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence            45788999999 899999999999985 99998887543                     1235567788776555321 


Q ss_pred             --ccccccCCCccEEEECCCCc
Q 025278          206 --ENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       206 --~~~~~~~~~~d~vid~~G~~  225 (255)
                        .........+|.+|-++|..
T Consensus       358 ~~~~~~~~~~~yD~vilAtGa~  379 (604)
T PRK13984        358 KDIPLEELREKHDAVFLSTGFT  379 (604)
T ss_pred             CcCCHHHHHhcCCEEEEEcCcC
Confidence              11122234799999999953

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.58  E-value=0.16  Score=42.58  Aligned_cols=68  Identities=15%  Similarity=0.117  Sum_probs=48.4

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      +|.|+| .|.+|...+..++.. |.+|++.++++++.+.+.+.|......   .+. +.....|+||.|+....
T Consensus         2 ~I~IIG-~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~~g~~~~~~---~~~-~~~~~aDlVilavp~~~   69 (279)
T PRK07417          2 KIGIVG-LGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIERGLVDEAS---TDL-SLLKDCDLVILALPIGL   69 (279)
T ss_pred             eEEEEe-ecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCCccccc---CCH-hHhcCCCEEEEcCCHHH
Confidence            588999 999999888777764 889999999999988888777421111   111 12356788888877443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.57  E-value=0.42  Score=42.76  Aligned_cols=78  Identities=21%  Similarity=0.156  Sum_probs=48.5

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-E--EcCCCccccc--cCCC
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-A--IDYTKENIED--LPEK  214 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~--~~~~  214 (255)
                      ....+++|++|+=.| +| .|..+.++++.++..++++++.++++++.+    +++|.+. +  .+.+......  ....
T Consensus       232 ~~L~~~~g~~VLDlc-ag-~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~  309 (426)
T TIGR00563       232 TWLAPQNEETILDAC-AA-PGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ  309 (426)
T ss_pred             HHhCCCCCCeEEEeC-CC-ccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence            445678899998777 43 366666677665457899999999998766    3456542 2  2222211111  1246


Q ss_pred             ccEEEE---CCC
Q 025278          215 FDVVFD---AVG  223 (255)
Q Consensus       215 ~d~vid---~~G  223 (255)
                      +|.||-   |+|
T Consensus       310 fD~VllDaPcSg  321 (426)
T TIGR00563       310 FDRILLDAPCSA  321 (426)
T ss_pred             cCEEEEcCCCCC
Confidence            999883   555

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=94.55  E-value=0.31  Score=38.21  Aligned_cols=98  Identities=19%  Similarity=0.168  Sum_probs=60.0

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC--EEEcCCCccccccCCCccE
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~~d~  217 (255)
                      ....+.++++||=.| +|. |..+..+++.....++++++.+++.++.+++    ++..  .++..+..  ....+.+|+
T Consensus        25 ~~l~~~~~~~vLDiG-~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~--~~~~~~~D~  100 (187)
T PRK08287         25 SKLELHRAKHLIDVG-AGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP--IELPGKADA  100 (187)
T ss_pred             HhcCCCCCCEEEEEC-CcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch--hhcCcCCCE
Confidence            455667888999888 444 7777777776445799999999987777643    3322  22222211  122347999


Q ss_pred             EEECCCCc---cceeeeeeccccCCceEEEEe
Q 025278          218 VFDAVGKM---CISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       218 vid~~G~~---~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      |+......   .....+.+.++ ++|+++...
T Consensus       101 v~~~~~~~~~~~~l~~~~~~Lk-~gG~lv~~~  131 (187)
T PRK08287        101 IFIGGSGGNLTAIIDWSLAHLH-PGGRLVLTF  131 (187)
T ss_pred             EEECCCccCHHHHHHHHHHhcC-CCeEEEEEE
Confidence            98543211   12233456666 789887643

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.55  E-value=0.15  Score=43.06  Aligned_cols=49  Identities=27%  Similarity=0.316  Sum_probs=41.5

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcC
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLG  196 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g  196 (255)
                      +.++-..++|+|++.++|++.+..++. .|+.|..+.++.+|+..++ +++
T Consensus        29 ~~k~~~hi~itggS~glgl~la~e~~~-~ga~Vti~ar~~~kl~~a~~~l~   78 (331)
T KOG1210|consen   29 KPKPRRHILITGGSSGLGLALALECKR-EGADVTITARSGKKLLEAKAELE   78 (331)
T ss_pred             ccCccceEEEecCcchhhHHHHHHHHH-ccCceEEEeccHHHHHHHHhhhh
Confidence            344557899999999999999999998 4999999999999998874 444

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=94.55  E-value=0.32  Score=40.16  Aligned_cols=98  Identities=19%  Similarity=0.150  Sum_probs=65.1

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECC
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      +......++++||=+| +|. |..+..+++...+.+++.++.+++-++.+++.+.+.+ ..+..++. ....+|+|+-..
T Consensus        22 l~~l~~~~~~~vLDlG-cG~-G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~-~~d~~~~~-~~~~fD~v~~~~   97 (255)
T PRK14103         22 LARVGAERARRVVDLG-CGP-GNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDAR-TGDVRDWK-PKPDTDVVVSNA   97 (255)
T ss_pred             HHhCCCCCCCEEEEEc-CCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEE-EcChhhCC-CCCCceEEEEeh
Confidence            4455667889999998 554 7788888876446899999999998888887665433 22222221 134799999754


Q ss_pred             CC------ccceeeeeeccccCCceEEEE
Q 025278          223 GK------MCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       223 G~------~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      .-      ......+.+.++ ++|++++.
T Consensus        98 ~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~  125 (255)
T PRK14103         98 ALQWVPEHADLLVRWVDELA-PGSWIAVQ  125 (255)
T ss_pred             hhhhCCCHHHHHHHHHHhCC-CCcEEEEE
Confidence            31      122233455566 88998764

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.48  E-value=0.26  Score=41.73  Aligned_cols=94  Identities=20%  Similarity=0.202  Sum_probs=58.8

Q ss_pred             ccchhHHHHHHHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-cChhhHHHHHHcCCCEEEcCCCccc
Q 025278          131 SLPLATETAYEGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLGADLAIDYTKENI  208 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~~~~~~~~~~~~g~~~v~~~~~~~~  208 (255)
                      .+|++....+..++...+ -.|++|+|+|-++.+|.-.+..+.. .|+.|.+.. ++.+                    .
T Consensus       137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~-~g~tVtv~~~rT~~--------------------l  195 (296)
T PRK14188        137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLA-ANATVTIAHSRTRD--------------------L  195 (296)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHh-CCCEEEEECCCCCC--------------------H
Confidence            346665555555554443 5799999999999999998888887 489898884 4431                    1


Q ss_pred             cccCCCccEEEECCCCccceeeeeeccccCCceEEEEeec
Q 025278          209 EDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       209 ~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      .+..+..|+||-++|.+.....  .+++ ++..++.+|..
T Consensus       196 ~e~~~~ADIVIsavg~~~~v~~--~~lk-~GavVIDvGin  232 (296)
T PRK14188        196 PAVCRRADILVAAVGRPEMVKG--DWIK-PGATVIDVGIN  232 (296)
T ss_pred             HHHHhcCCEEEEecCChhhcch--heec-CCCEEEEcCCc
Confidence            2223345667766665543222  2233 45556666654

>PRK08291 ectoine utilization protein EutC; Validated

Probab=94.48  E-value=0.74  Score=39.71  Aligned_cols=94  Identities=12%  Similarity=0.079  Sum_probs=57.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHH-HHc----CCCEEEcCCCccccccCCCccEEEECC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLL-RSL----GADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~-~~~----g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      +..++++|+| +|+.|.+.+..+....+ .++.+..++++|.+.+ +++    |.. +...  .+..+...+.|+|+.|+
T Consensus       130 ~~~~~v~IiG-aG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~-v~~~--~d~~~al~~aDiVi~aT  205 (330)
T PRK08291        130 EDASRAAVIG-AGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIP-VTVA--RDVHEAVAGADIIVTTT  205 (330)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCce-EEEe--CCHHHHHccCCEEEEee
Confidence            4457899999 89999987766664334 5677778998887665 333    432 1111  12333345789999999


Q ss_pred             CCccceeeeeeccccCCceEEEEeec
Q 025278          223 GKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       223 G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      .+..-... ...++ ++-.+..+|..
T Consensus       206 ~s~~p~i~-~~~l~-~g~~v~~vg~d  229 (330)
T PRK08291        206 PSEEPILK-AEWLH-PGLHVTAMGSD  229 (330)
T ss_pred             CCCCcEec-HHHcC-CCceEEeeCCC
Confidence            86543222 22343 44456666653

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.47  E-value=0.059  Score=44.25  Aligned_cols=77  Identities=21%  Similarity=0.327  Sum_probs=44.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-------------------hH----HHHHHcCCCEEEcCCC--
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-------------------KL----DLLRSLGADLAIDYTK--  205 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-------------------~~----~~~~~~g~~~v~~~~~--  205 (255)
                      ..+|+|.| +|++|..+++.+..++-.+++++|.+.-                   |.    +.+++++.+.-+...+  
T Consensus        24 ~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~  102 (240)
T TIGR02355        24 ASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK  102 (240)
T ss_pred             CCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence            36799999 9999999888888763345555553221                   11    1223344222222111  


Q ss_pred             ---ccccccCCCccEEEECCCCccce
Q 025278          206 ---ENIEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       206 ---~~~~~~~~~~d~vid~~G~~~~~  228 (255)
                         ++..+..+++|+||||+....+.
T Consensus       103 i~~~~~~~~~~~~DlVvd~~D~~~~r  128 (240)
T TIGR02355       103 LDDAELAALIAEHDIVVDCTDNVEVR  128 (240)
T ss_pred             CCHHHHHHHhhcCCEEEEcCCCHHHH
Confidence               12223346899999999876543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=94.47  E-value=0.092  Score=45.22  Aligned_cols=37  Identities=16%  Similarity=0.197  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      ++++|||+||+|.+|...++.+... |.+|++++++++
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~-G~~V~~~~r~~~   41 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSK-GYEVHGIIRRSS   41 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHC-CCEEEEEecccc
Confidence            4678999999999999999988884 999999887543

>PRK06940 short chain dehydrogenase; Provisional

Probab=94.44  E-value=0.23  Score=41.41  Aligned_cols=71  Identities=17%  Similarity=0.340  Sum_probs=45.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HH---cCCCE-EE--cCCCcc-ccc------cCCCcc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RS---LGADL-AI--DYTKEN-IED------LPEKFD  216 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~---~g~~~-v~--~~~~~~-~~~------~~~~~d  216 (255)
                      +++++|+|+ |++|...+..+.  .|.+|+++++++++++.+ ++   .|.+. .+  |-.+.+ ...      ..+++|
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~--~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG--AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            467899995 899999888874  389999999987766543 22   24221 22  322221 111      124699


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|+++|.
T Consensus        79 ~li~nAG~   86 (275)
T PRK06940         79 GLVHTAGV   86 (275)
T ss_pred             EEEECCCc
Confidence            99999984

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.44  E-value=0.071  Score=46.84  Aligned_cols=35  Identities=17%  Similarity=0.210  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      ...+|+|.| +|++|..++..+...+-.++.++|.+
T Consensus       134 ~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            456899999 89999988888777633466677765

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.44  E-value=0.26  Score=40.48  Aligned_cols=35  Identities=26%  Similarity=0.242  Sum_probs=28.5

Q ss_pred             CCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecC
Q 025278          150 AGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       150 ~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      .+++++|+||+  |++|...+..+.. .|++|+++.++
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~-~G~~vi~~~r~   40 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAA-KGIDIFFTYWS   40 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHH-cCCcEEEEcCC
Confidence            45789999987  4899998877776 48999998876

>PLN02244 tocopherol O-methyltransferase

Probab=94.43  E-value=0.45  Score=41.23  Aligned_cols=96  Identities=18%  Similarity=0.109  Sum_probs=59.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCCCccEEEEC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      +++++||=+| +| .|..+..+++.. ++++++++.+++..+.+++    .|..   ..+..+..+..-..+.+|+|+-.
T Consensus       117 ~~~~~VLDiG-CG-~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~  193 (340)
T PLN02244        117 KRPKRIVDVG-CG-IGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSM  193 (340)
T ss_pred             CCCCeEEEec-CC-CCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEEC
Confidence            7889999888 44 477888888874 8999999999987766643    2321   11222211111113479999864


Q ss_pred             CCCc------cceeeeeeccccCCceEEEEeec
Q 025278          222 VGKM------CISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       222 ~G~~------~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      -...      .....+.+.++ ++|++++....
T Consensus       194 ~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~~  225 (340)
T PLN02244        194 ESGEHMPDKRKFVQELARVAA-PGGRIIIVTWC  225 (340)
T ss_pred             CchhccCCHHHHHHHHHHHcC-CCcEEEEEEec
Confidence            3311      12233456666 89999987653

>PRK06123 short chain dehydrogenase; Provisional

Probab=94.43  E-value=0.25  Score=40.19  Aligned_cols=73  Identities=19%  Similarity=0.329  Sum_probs=44.8

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-cChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~~  214 (255)
                      +++++|+|++|++|...++.+.. .|++++... +++++.+..    ++.+... .+  |..+.. ..+       ..+.
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~-~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAE-RGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHH-CCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999998887776 488887765 444443322    3334322 22  222211 111       1236


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|.+.|.
T Consensus        81 id~li~~ag~   90 (248)
T PRK06123         81 LDALVNNAGI   90 (248)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.41  E-value=0.13  Score=41.66  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=44.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE-EEcCCCc--cccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL-AIDYTKE--NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~-v~~~~~~--~~~~~~~~~d~vid~~G~  224 (255)
                      .+++++|+|++|++|...+..+.. .|++++++++++....   ...... ..|..+.  ...+..+.+|++|++.|.
T Consensus         4 ~~k~~lVtGas~~iG~~ia~~l~~-~G~~v~~~~r~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~   77 (235)
T PRK06550          4 MTKTVLITGAASGIGLAQARAFLA-QGAQVYGVDKQDKPDL---SGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGI   77 (235)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHH-CCCEEEEEeCCccccc---CCcEEEEECChHHHHHHHHHhhCCCCEEEECCCC
Confidence            467899999999999998887777 4899999887654321   001111 1121111  011113478999999884

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=94.41  E-value=0.061  Score=37.13  Aligned_cols=76  Identities=22%  Similarity=0.273  Sum_probs=51.0

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcC---CcEEEE-ecChhhHHHH-HHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFG---ASKVAA-TSSTAKLDLL-RSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g---~~vi~~-~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      ++.++| +|.+|.+.+.-+... +   .+++.+ .+++++.+.+ ++++..... .   +..+..+..|+||-|+-....
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~-~---~~~~~~~~advvilav~p~~~   74 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLAS-GIKPHEVIIVSSRSPEKAAELAKEYGVQATA-D---DNEEAAQEADVVILAVKPQQL   74 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHT-TS-GGEEEEEEESSHHHHHHHHHHCTTEEES-E---EHHHHHHHTSEEEE-S-GGGH
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCCceeEEeeccCcHHHHHHHHHhhcccccc-C---ChHHhhccCCEEEEEECHHHH
Confidence            467888 999999988887774 7   788855 8999988876 566654332 1   122223468999999987766


Q ss_pred             eeeeeec
Q 025278          228 SIVYQKC  234 (255)
Q Consensus       228 ~~~~~~~  234 (255)
                      ...+.+.
T Consensus        75 ~~v~~~i   81 (96)
T PF03807_consen   75 PEVLSEI   81 (96)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=94.38  E-value=0.28  Score=39.76  Aligned_cols=34  Identities=26%  Similarity=0.285  Sum_probs=29.5

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      ++++|+|++|++|..+++.+.. .|.+|+.+++++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~-~g~~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLN-DGYRVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCc
Confidence            4799999999999998888877 489999998874

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.35  E-value=0.1  Score=44.81  Aligned_cols=65  Identities=23%  Similarity=0.341  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      .|+++.|+| .|.||++.++.++. .|.+++..++++. .+..++.++.++-      +.+..+..|++.-.+.
T Consensus       145 ~gktvGIiG-~GrIG~avA~r~~~-Fgm~v~y~~~~~~-~~~~~~~~~~y~~------l~ell~~sDii~l~~P  209 (324)
T COG1052         145 RGKTLGIIG-LGRIGQAVARRLKG-FGMKVLYYDRSPN-PEAEKELGARYVD------LDELLAESDIISLHCP  209 (324)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhc-CCCEEEEECCCCC-hHHHhhcCceecc------HHHHHHhCCEEEEeCC
Confidence            489999999 99999999999997 5999999998865 3334444443321      3333445677665555

>PRK04457 spermidine synthase; Provisional

Probab=94.35  E-value=0.24  Score=41.24  Aligned_cols=93  Identities=13%  Similarity=0.139  Sum_probs=58.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc-CC----C--EEEcCCCccc-cccCCCccEEE-
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL-GA----D--LAIDYTKENI-EDLPEKFDVVF-  219 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~-g~----~--~v~~~~~~~~-~~~~~~~d~vi-  219 (255)
                      ..+++||++| +|+ |.++..+++...+.++++++.+++-.+.+++. +.    +  .++..+...+ ....+.+|+|+ 
T Consensus        65 ~~~~~vL~IG-~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~  142 (262)
T PRK04457         65 PRPQHILQIG-LGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV  142 (262)
T ss_pred             CCCCEEEEEC-CCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence            4567899999 554 88888888876678999999999999888753 31    1  2232222221 22234789988 


Q ss_pred             ECCCCc---------cceeeeeeccccCCceEEE
Q 025278          220 DAVGKM---------CISIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       220 d~~G~~---------~~~~~~~~~~~~~~G~~v~  244 (255)
                      |+-.+.         .....+.+.++ ++|+++.
T Consensus       143 D~~~~~~~~~~l~t~efl~~~~~~L~-pgGvlvi  175 (262)
T PRK04457        143 DGFDGEGIIDALCTQPFFDDCRNALS-SDGIFVV  175 (262)
T ss_pred             eCCCCCCCccccCcHHHHHHHHHhcC-CCcEEEE
Confidence            332211         22233445566 7898876

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.35  E-value=0.22  Score=44.75  Aligned_cols=72  Identities=22%  Similarity=0.290  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh----HHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK----LDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~----~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      .+++++|+| .|++|++++.+++.. |++|++.+.+.+.    .+.+++.|..........+.  ..+++|+|+.+.|-+
T Consensus         4 ~~k~v~v~G-~g~~G~s~a~~l~~~-G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~d~vV~s~gi~   79 (447)
T PRK02472          4 QNKKVLVLG-LAKSGYAAAKLLHKL-GANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLEL--LDEDFDLMVKNPGIP   79 (447)
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHC-CCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHH--hcCcCCEEEECCCCC
Confidence            467899999 567999999999985 9999999865422    23345567644332222221  112489999988743

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.34  E-value=0.13  Score=44.18  Aligned_cols=38  Identities=21%  Similarity=0.242  Sum_probs=31.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL  191 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~  191 (255)
                      ++|.|+| +|.+|...++.+.. .|.+|++.+.+++.++.
T Consensus         8 ~~VaVIG-aG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~   45 (321)
T PRK07066          8 KTFAAIG-SGVIGSGWVARALA-HGLDVVAWDPAPGAEAA   45 (321)
T ss_pred             CEEEEEC-cCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHH
Confidence            6799999 89999988777776 49999999998876554

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.31  E-value=0.11  Score=43.69  Aligned_cols=86  Identities=19%  Similarity=0.244  Sum_probs=54.1

Q ss_pred             EEEEEcCCchHHHHH-HHHHHHhcCCcEEEE-ecChhh--HHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccce
Q 025278          153 SILVLGGAGGVGTMV-IQLAKHVFGASKVAA-TSSTAK--LDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a-~~~a~~~~g~~vi~~-~~~~~~--~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~  228 (255)
                      +|.|+| +|.+|... ..+.+ ....++..+ +.++++  ++.++++|....++.-+.-..  ..++|+||++++...-.
T Consensus         3 rVAIIG-~G~IG~~h~~~ll~-~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~--~~dIDaV~iaTp~~~H~   78 (285)
T TIGR03215         3 KVAIIG-SGNIGTDLMYKLLR-SEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLA--NPDIDIVFDATSAKAHA   78 (285)
T ss_pred             EEEEEe-CcHHHHHHHHHHHh-CCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhc--CCCCCEEEECCCcHHHH
Confidence            688999 79999865 45554 357788865 455554  566788887655432111111  24799999999977555


Q ss_pred             eeeeeccccCCceEEE
Q 025278          229 IVYQKCDKFQEKSLIN  244 (255)
Q Consensus       229 ~~~~~~~~~~~G~~v~  244 (255)
                      ..+....+  .|+-++
T Consensus        79 e~a~~al~--aGk~VI   92 (285)
T TIGR03215        79 RHARLLAE--LGKIVI   92 (285)
T ss_pred             HHHHHHHH--cCCEEE
Confidence            55555543  355543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=94.31  E-value=0.25  Score=38.97  Aligned_cols=72  Identities=28%  Similarity=0.390  Sum_probs=48.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh-HHHHHHcCC--CEE-E--cCCCcc-----ccc---cCCCcc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK-LDLLRSLGA--DLA-I--DYTKEN-----IED---LPEKFD  216 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~-~~~~~~~g~--~~v-~--~~~~~~-----~~~---~~~~~d  216 (255)
                      .+..+|+|+++++|.+.++.+.. .|+++.+.+.+.+. .+.++.++.  +|. |  |..+..     +++   ..+.++
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~-~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~ps   92 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAK-KGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPS   92 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHh-cCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCc
Confidence            35678999999999999988887 49999999876554 344567764  332 2  222111     111   124689


Q ss_pred             EEEECCC
Q 025278          217 VVFDAVG  223 (255)
Q Consensus       217 ~vid~~G  223 (255)
                      ++++|.|
T Consensus        93 vlVncAG   99 (256)
T KOG1200|consen   93 VLVNCAG   99 (256)
T ss_pred             EEEEcCc
Confidence            9999999

>PRK06823 ornithine cyclodeaminase; Validated

Probab=94.28  E-value=1  Score=38.64  Aligned_cols=97  Identities=11%  Similarity=0.068  Sum_probs=64.1

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHH----HHcCCCEEEcCCCccccccCCCccEEEECC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLL----RSLGADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      .+..+++.|+| +|..+...++.....+. .+|.+..+++++.+.+    ++.+.+...-   .+.++...+.|+|+-|+
T Consensus       125 ~~d~~~l~iiG-~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~---~~~~~av~~ADIV~taT  200 (315)
T PRK06823        125 PQHVSAIGIVG-TGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTT---LDAAEVAHAANLIVTTT  200 (315)
T ss_pred             CCCCCEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEE---CCHHHHhcCCCEEEEec
Confidence            35667899999 99999887777766544 4566778998887643    2234332211   23344457899999998


Q ss_pred             CCccceeeeeeccccCCceEEEEeeccC
Q 025278          223 GKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       223 G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++..-.. -...++ ++-.+..+|.+..
T Consensus       201 ~s~~P~~-~~~~l~-~G~hi~~iGs~~p  226 (315)
T PRK06823        201 PSREPLL-QAEDIQ-PGTHITAVGADSP  226 (315)
T ss_pred             CCCCcee-CHHHcC-CCcEEEecCCCCc
Confidence            8665332 244565 6668888887654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=94.25  E-value=0.2  Score=39.66  Aligned_cols=98  Identities=20%  Similarity=0.126  Sum_probs=56.4

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCEEEcCCCccccccCCCccEEEEC
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADLAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      ....++.+||-.| + |.|..+..+++.  +.+|+++|.+++-++.+++    .+........+.......+.+|+|+.+
T Consensus        26 ~~~~~~~~vLDiG-c-G~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~  101 (195)
T TIGR00477        26 VKTVAPCKTLDLG-C-GQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFST  101 (195)
T ss_pred             hccCCCCcEEEeC-C-CCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEe
Confidence            3444567899888 4 458888888874  7899999999887765532    232211110011101113469999864


Q ss_pred             CCC--------ccceeeeeeccccCCceEEEEeec
Q 025278          222 VGK--------MCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       222 ~G~--------~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      .--        ......+.+.++ ++|+++++-..
T Consensus       102 ~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lli~~~~  135 (195)
T TIGR00477       102 VVFMFLQAGRVPEIIANMQAHTR-PGGYNLIVAAM  135 (195)
T ss_pred             cccccCCHHHHHHHHHHHHHHhC-CCcEEEEEEec
Confidence            221        122334455566 89996665443

Part of a tellurite-reducing operon tehA and tehB

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=94.24  E-value=0.36  Score=38.30  Aligned_cols=98  Identities=18%  Similarity=0.205  Sum_probs=58.2

Q ss_pred             hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCE--EEcCCCccccccCCCccEE
Q 025278          145 RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADL--AIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       145 ~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~~d~v  218 (255)
                      .....++.+||-.| +|. |..+..+++.  +.+|+++|.+++-++.+++    .+...  ....+-.++ ...+.+|+|
T Consensus        25 ~l~~~~~~~vLDiG-cG~-G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~I   99 (197)
T PRK11207         25 AVKVVKPGKTLDLG-CGN-GRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-TFDGEYDFI   99 (197)
T ss_pred             hcccCCCCcEEEEC-CCC-CHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-CcCCCcCEE
Confidence            33455678899998 544 8888888874  7899999999886666543    23221  111111111 123469999


Q ss_pred             EECCCCc--------cceeeeeeccccCCceEEEEeec
Q 025278          219 FDAVGKM--------CISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       219 id~~G~~--------~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      +.+..-.        .....+.+.++ ++|.++++..+
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~~~~~~~~  136 (197)
T PRK11207        100 LSTVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVAAM  136 (197)
T ss_pred             EEecchhhCCHHHHHHHHHHHHHHcC-CCcEEEEEEEe
Confidence            9764311        22223455566 89996655444

>PRK12827 short chain dehydrogenase; Provisional

Probab=94.22  E-value=0.3  Score=39.63  Aligned_cols=34  Identities=24%  Similarity=0.454  Sum_probs=28.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS  184 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~  184 (255)
                      .+.+++|+||+|++|...+..+.. .|.+++++++
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~-~g~~v~~~~~   38 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAA-DGADVIVLDI   38 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCeEEEEcC
Confidence            457899999999999998887777 4899888654

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=94.22  E-value=0.91  Score=39.09  Aligned_cols=96  Identities=9%  Similarity=0.068  Sum_probs=61.6

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHH-H---HcCCCEEEcCCCccccccCCCccEEEECC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLL-R---SLGADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~-~---~~g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      .+...++.|+| +|..|...++.+.... ..++.+.+++.++.+.+ +   ++|..... .  .+..+..++.|+|+-|+
T Consensus       125 ~~~~~~lgiiG-~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~-~--~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       125 RKDSSVLGIIG-AGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRA-A--TDPREAVEGCDILVTTT  200 (325)
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEE-e--CCHHHHhccCCEEEEec
Confidence            34568899999 9999998665555433 45677778998887654 3   34432111 1  23334456899999998


Q ss_pred             CCccceeeeeeccccCCceEEEEeecc
Q 025278          223 GKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       223 G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .+.. ...-...++ ++-.+..+|.+.
T Consensus       201 ~s~~-P~~~~~~l~-~g~~v~~vGs~~  225 (325)
T TIGR02371       201 PSRK-PVVKADWVS-EGTHINAIGADA  225 (325)
T ss_pred             CCCC-cEecHHHcC-CCCEEEecCCCC
Confidence            7654 222344555 666788898754

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK07402 precorrin-6B methylase; Provisional

Probab=94.20  E-value=0.35  Score=38.21  Aligned_cols=101  Identities=15%  Similarity=0.164  Sum_probs=58.0

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC--EEEcCCCcc-ccccCCCcc
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD--LAIDYTKEN-IEDLPEKFD  216 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~-~~~~~~~~d  216 (255)
                      ....++++++|+=.| + +.|..+..+++...+.++++++.+++..+.+++    ++.+  .++..+..+ +.......|
T Consensus        34 ~~l~~~~~~~VLDiG-~-G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d  111 (196)
T PRK07402         34 SQLRLEPDSVLWDIG-A-GTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPD  111 (196)
T ss_pred             HhcCCCCCCEEEEeC-C-CCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCC
Confidence            455677889888777 3 346666677765446899999999988877643    4543  233322211 111122334


Q ss_pred             E-EEECCCC-ccceeeeeeccccCCceEEEEee
Q 025278          217 V-VFDAVGK-MCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       217 ~-vid~~G~-~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      . +++.... ......+.+.++ ++|+++..-.
T Consensus       112 ~v~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~  143 (196)
T PRK07402        112 RVCIEGGRPIKEILQAVWQYLK-PGGRLVATAS  143 (196)
T ss_pred             EEEEECCcCHHHHHHHHHHhcC-CCeEEEEEee
Confidence            4 4443221 133334455566 7899887754

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=94.17  E-value=0.11  Score=43.16  Aligned_cols=71  Identities=13%  Similarity=0.191  Sum_probs=49.5

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCC-C-cccccc--CCCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYT-K-ENIEDL--PEKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~-~-~~~~~~--~~~~d~vid~~G~  224 (255)
                      .+|+|+||+|- |...+..+... |.+|+++++++.+.+.+.+.|...+.... + ....+.  ..++|+|||++..
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~-g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHP   75 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQ-GIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHP   75 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhC-CCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCH
Confidence            37999997776 88888766664 89999999999888777777655554222 1 112121  3479999999773

This enzyme was found to be a monomer by gel filtration.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.16  E-value=0.29  Score=39.82  Aligned_cols=74  Identities=20%  Similarity=0.299  Sum_probs=53.5

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH--HcCCCEEEcCCCcc---cccc-CCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR--SLGADLAIDYTKEN---IEDL-PEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~--~~g~~~v~~~~~~~---~~~~-~~~~d~vid~~G~~  225 (255)
                      ++++|.| +|.+|...++.+... |..|++++.++++.+...  ++.. +++..+..+   +.+. ...+|+++=++|..
T Consensus         1 m~iiIiG-~G~vG~~va~~L~~~-g~~Vv~Id~d~~~~~~~~~~~~~~-~~v~gd~t~~~~L~~agi~~aD~vva~t~~d   77 (225)
T COG0569           1 MKIIIIG-AGRVGRSVARELSEE-GHNVVLIDRDEERVEEFLADELDT-HVVIGDATDEDVLEEAGIDDADAVVAATGND   77 (225)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhC-CCceEEEEcCHHHHHHHhhhhcce-EEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence            3688999 999999999999984 999999999999987743  3554 344333322   2222 35799999999975


Q ss_pred             cce
Q 025278          226 CIS  228 (255)
Q Consensus       226 ~~~  228 (255)
                      ...
T Consensus        78 ~~N   80 (225)
T COG0569          78 EVN   80 (225)
T ss_pred             HHH
Confidence            443

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.15  E-value=0.18  Score=42.53  Aligned_cols=38  Identities=16%  Similarity=0.288  Sum_probs=32.4

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL  191 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~  191 (255)
                      .+|.|+| +|.+|.-.++.+.. .|.+|++.++++++++.
T Consensus         6 ~~V~ViG-aG~mG~~iA~~~a~-~G~~V~l~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVG-AGQMGAGIAEVCAR-AGVDVLVFETTEELATA   43 (286)
T ss_pred             cEEEEEc-ccHHHHHHHHHHHh-CCCEEEEEECCHHHHHH
Confidence            4799999 89999887777766 49999999999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	255
2vn8_A	375	Crystal Structure Of Human Reticulon 4 Interacting		9e-28
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		2e-25
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		7e-24
4dvj_A	363	Crystal Structure Of A Putative Zinc-Dependent Alco		1e-21
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		1e-19
3gaz_A	343	Crystal Structure Of An Alcohol Dehydrogenase Super		8e-19
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		9e-19
3b6z_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Comple		3e-17
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		4e-17
3gqv_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant		1e-16
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		6e-16
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		2e-15
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		3e-15
4a0s_A	447	Structure Of The 2-Octenoyl-Coa Carboxylase Reducta		1e-14
3goh_A	315	Crystal Structure Of Alcohol Dehydrogenase Superfam		1e-14
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		1e-14
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		1e-14
4dup_A	353	Crystal Structure Of A Quinone Oxidoreductase From		1e-13
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		2e-13
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		2e-13
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		2e-13
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		3e-13
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		1e-12
3hzz_A	467	2.4 Angstrom Crystal Structure Of Streptomyces Coll		9e-12
3krt_A	456	Crystal Structure Of Putative Crotonyl Coa Reductas		3e-11
2cf2_D	295	Architecture Of Mammalian Fatty Acid Synthase Lengt		3e-11
1iyz_A	302	Crystal Structures Of The Quinone Oxidoreductase Fr		4e-11
3gms_A	340	Crystal Structure Of Putative Nadph:quinone Reducta		1e-10
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		2e-10
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		4e-10
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		5e-10
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		5e-10
3slk_A	795	Structure Of Ketoreductase And Enoylreductase Didom		7e-10
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		7e-10
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		1e-09
1xa0_A	328	Crystal Structure Of Mcsg Target Apc35536 From Baci		1e-09
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		2e-09
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		2e-09
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		2e-09
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		5e-09
1qor_A	327	Crystal Structure Of Escherichia Coli Quinone Oxido		2e-08
1jvb_A	347	Alcohol Dehydrogenase From The Archaeon Sulfolobus		4e-08
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		5e-08
1zsy_A	357	The Structure Of Human Mitochondrial 2-Enoyl Thioes		7e-08
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		7e-08
2vcy_A	344	Crystal Structure Of 2-Enoyl Thioester Reductase Of		8e-08
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		8e-08
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		9e-08
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		3e-07
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		3e-07
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		6e-07
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		7e-07
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		3e-06
1iz0_A	302	Crystal Structures Of The Quinone Oxidoreductase Fr		8e-06
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		2e-05
1tt7_A	330	Crystal Structure Of Bacillus Subtilis Protein Yhfp		4e-05
1v3t_A	333	Crystal Structure Of Leukotriene B4 12- Hydroxydehy		5e-05
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		1e-04
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		1e-04
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-04
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-04
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		2e-04
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		3e-04
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		3e-04
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		3e-04
2oui_A	360	D275p Mutant Of Alcohol Dehydrogenase From Protozoa		3e-04
1y9a_A	360	Alcohol Dehydrogenase From Entamoeba Histolotica In		3e-04
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		4e-04
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		5e-04
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		6e-04
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		8e-04
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		8e-04
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		9e-04

>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein 1 In Complex With Nadph Length = 375

Iteration: 1
 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 127/247 (51%), Gaps = 39/247 (15%)
Query: 3   AWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLG----AFSATD 57
           AWV  +YG ++ VL+F  N+ +P +   ++V++KV AA++NPID     G    A +   
Sbjct: 24  AWVIDKYGKNE-VLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82
Query: 58  SPL---------PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAE 108
            PL         P   G DV+GVV + G  VK FK GDEV+  +       P + G+L+E
Sbjct: 83  DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTLSE 136
Query: 109 YTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-----SAFSAGKSILVLGGAGGV 163
           +  V  N ++ KPK+L+  +AASLP    TA+  + +          GK +L+LG +GGV
Sbjct: 137 FVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGV 196
Query: 164 GTMVIQLAK----HVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEK---FD 216
           GT  IQ+ K    HV               +L+R LGAD  IDY   ++E+  +    FD
Sbjct: 197 GTFAIQVMKAWDAHVTAVCSQDAS------ELVRKLGADDVIDYKSGSVEEQLKSLKPFD 250
Query: 217 VVFDAVG 223
            + D VG
Sbjct: 251 FILDNVG 257

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 107/190 (56%), Gaps = 18/190 (9%)
Query: 21  NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK 80
           N+++P  +  ++L+K+ + ++NP+D K+ L   S      P + G+D  GVVE VG++V 
Sbjct: 24  NLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSKA----PRVLGFDAIGVVESVGNEVT 79
Query: 81  KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY 140
            F  GD VY          P +NGS AEY  + E L+A  PKN+S  +A SLPL   TAY
Sbjct: 80  MFNQGDIVYYS------GSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAY 133
Query: 141 E------GLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLR 193
           E      G+ R+   + GK++L++ GAGGVG++  Q+AK  +G            ++  +
Sbjct: 134 ETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAK-AYGLRVITTASRNETIEWTK 192
Query: 194 SLGADLAIDY 203
            +GAD+ +++
Sbjct: 193 KMGADIVLNH 202

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 13/226 (5%)
Query: 2   KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGA-FSATD--S 58
           KA  + ++G  + VLK   +   P  R++Q LIKV AA+LNPID+K   G+ F A    +
Sbjct: 8   KAIQFDQFGPPK-VLKL-VDTPTPEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKKLKN 65
Query: 59  PLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLA 118
            LP+  GYD +G V ++GS V    +GD+V G       DHP      AEY     + + 
Sbjct: 66  NLPSGLGYDFSGEVIELGSDVNNVNIGDKVXGIAGFP--DHP---CCYAEYVCASPDTII 120
Query: 119 LKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXX 178
            K + LSF++AASLP A  TA + L ++    G  +L+  GAGGVG + IQLAK      
Sbjct: 121 QKLEKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQ--KGT 178
Query: 179 XXXXXXXXXXLDLLRSLGADLAIDYTKEN-IEDLPEKFDVVFDAVG 223
                        L++LGA+  I+Y +E+ +  +    D V D VG
Sbjct: 179 TVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVG 224

>pdb|4DVJ|A Chain A, Crystal Structure Of A Putative Zinc-Dependent Alcohol Dehydrogenase Protein From Rhizobium Etli Cfn 42 Length = 363

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 20/190 (10%)
Query: 25  PSLREDQVLIKVVAAALNPIDFK-RMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFK 83
           P+     +L++V A ++NP+D+K R       TD     + GYD AG+V  VG  V  F+
Sbjct: 48  PAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDW---KVIGYDAAGIVSAVGPDVTLFR 104
Query: 84  VGDEVY--GDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE 141
            GDEV+  G I         R G+ AE+  V+E ++  KPK L + EAA+LPL + TA+E
Sbjct: 105 PGDEVFYAGSI--------IRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWE 156
Query: 142 G------LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSL 195
                  + +    A  +IL++GGAGGVG++ +Q+A+                 + ++SL
Sbjct: 157 AFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL 216
Query: 196 GADLAIDYTK 205
           GA   ID++K
Sbjct: 217 GAHHVIDHSK 226

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+A    E+G  + VLK  +++ VP  ++ QVLIKV A  +NP++     G +S     L
Sbjct: 30  MRAVRVFEFGGPE-VLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYS-RKPLL 87
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P  PG DVAGV+E VG     FK GD V+             +G  AEY    ++ +   
Sbjct: 88  PYTPGSDVAGVIEAVGDNASAFKKGDRVF--------TSSTISGGYAEYALAADHTVYKL 139
Query: 121 PKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAK 172
           P+ L F + A++ +   TAY  L  SA   AG+S+LV G +GGVG    Q+A+
Sbjct: 140 PEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIAR 192

>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans Length = 343

Iteration: 1
 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 21/223 (9%)
Query: 25  PSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKV 84
           P     QVL+++ A+  NP+D K   G       PLP I G D+AG V  VG +V  F+V
Sbjct: 28  PQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGXDLAGTVVAVGPEVDSFRV 87
Query: 85  GDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL- 143
           GD V+G             G+ A++ AV+  LLA KP  L+  +A+ LPL   TA+EGL 
Sbjct: 88  GDAVFGLTGGVG----GLQGTHAQFAAVDARLLASKPAALTXRQASVLPLVFITAWEGLV 143
Query: 144 ERSAFSAGKSILVLGGAGGVGTMVIQLA----KHVFGXXXXXXXXXXXXLDLLRSLGADL 199
           +R+    G+++L+ GG GGVG + IQ+A      VF             L+ +R LGA  
Sbjct: 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVF------ATARGSDLEYVRDLGAT- 196
Query: 200 AIDYTKENIEDLPEK-----FDVVFDAVGKMCISIVYQKCDKF 237
            ID ++E  +   E      FD+V+D +G   +   +    +F
Sbjct: 197 PIDASREPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSAVKRF 239

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 114/230 (49%), Gaps = 31/230 (13%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+A V +  G  + VL+   ++ VP     +V +++ AAALN +D     G  S    PL
Sbjct: 1   MRAVVMRARGGPE-VLEV-ADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVAS-PKLPL 57
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDIN--------EKAL--------------D 98
           P + G D +GVV+ VG  V+ F  GDEV   IN        E+ L              +
Sbjct: 58  PHVLGADGSGVVDAVGPGVEGFAPGDEVV--INPGLSCGRCERCLAGEDNLCPRYQILGE 115
Query: 99  HPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG-LERSAFSAGKSILVL 157
           H  R+G+ AEY  + E  LA KPKNLSF EAA++PL   TA++  +++     G  +LV+
Sbjct: 116 H--RHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVM 173
Query: 158 GGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKEN 207
               GV    IQ+AK +FG            L   ++LGAD  ++YT  +
Sbjct: 174 AAGSGVSVAAIQIAK-LFGARVIATAGSEDKLRRAKALGADETVNYTHPD 222

>pdb|3B6Z|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Complexed With 2'- Phosphoadenosyl Isomer Of Crotonoyl-Coa Length = 371

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 91/198 (45%), Gaps = 21/198 (10%)
Query: 24  VPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFK 83
            P L  DQV ++V A A+NP D K M G F+   + L    G D AG V  VGS V   +
Sbjct: 31  CPMLPRDQVYVRVEAVAINPSDTK-MRGQFATPWAFL----GTDYAGTVVAVGSDVTHIQ 85
Query: 84  VGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETA---- 139
           VGD VYG  NE     P + G+ ++YT     + A  PK LSF +AA+LP    TA    
Sbjct: 86  VGDRVYGAQNEMCPRTPDQ-GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAM 144
Query: 140 -YEGLERSAFSAGKS--------ILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLD 190
              GL   + SA +         +LV GG+    T+ +Q+ +                 D
Sbjct: 145 KLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLR--LSGYIPIATCSPHNFD 202
Query: 191 LLRSLGADLAIDYTKENI 208
           L +S GA+   DY   N+
Sbjct: 203 LAKSRGAEEVFDYRAPNL 220

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 16  LKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSAT------DSPLPTIPGYDVA 69
           LK E ++ +P  +  QVLIK+ AA +   D     G F            LP   G+++A
Sbjct: 13  LKLE-DIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIA 71
Query: 70  GVVEKVGSQVKKFKVGDEV------------YGDINEKAL-DHPK-----RNGSLAEYTA 111
           G +E+VG +V  +  GD V            Y  I E+ L D P+      +G+ AEY  
Sbjct: 72  GRIEEVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCDSPRWLGINYDGAYAEYVL 131
Query: 112 VEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLA 171
           V       K + LS VEAA L  +  T Y  + +++    K+++V+G  GG+GTM IQ+A
Sbjct: 132 VPHYKYLYKLRRLSAVEAAPLTCSGVTTYRAVRKASLDPSKTLVVIGAGGGLGTMAIQIA 191
Query: 172 KHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKEN 207
           K V G            L+  +  GAD  I+ + ++
Sbjct: 192 KAVSGATIIGVDVREEALEAAKRAGADYVINASSQD 227

>pdb|3GQV|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant K54s With Bound Nadp Length = 371

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 90/198 (45%), Gaps = 21/198 (10%)
Query: 24  VPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFK 83
            P L  DQV ++V A A+NP D   M G F+   + L    G D AG V  VGS V   +
Sbjct: 31  CPMLPRDQVYVRVEAVAINPSD-TSMRGQFATPWAFL----GTDYAGTVVAVGSDVTHIQ 85
Query: 84  VGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETA---- 139
           VGD VYG  NE     P + G+ ++YT     + A  PK LSF +AA+LP    TA    
Sbjct: 86  VGDRVYGAQNEMCPRTPDQ-GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAM 144
Query: 140 -YEGLERSAFSAGKS--------ILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLD 190
              GL   + SA +         +LV GG+    T+ +Q+ +                 D
Sbjct: 145 KLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLR--LSGYIPIATCSPHNFD 202
Query: 191 LLRSLGADLAIDYTKENI 208
           L +S GA+   DY   N+
Sbjct: 203 LAKSRGAEEVFDYRAPNL 220

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 26/226 (11%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V   YG   + L+ E  V+VP     QVL+K+ A+ +   D     G +     PL
Sbjct: 7   MKAAVVHAYG---APLRIE-EVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWP-VKPPL 61
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-------------YGDINEKALDHPKRN---- 103
           P IPG++  G V  VGS V + K GD V             +     + L   ++N    
Sbjct: 62  PFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYS 121
Query: 104 --GSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG 161
             G  AEY   + N + + PKN+ F E A +  A  T Y+GL+++    G+ +  + G G
Sbjct: 122 VNGGYAEYVLADPNYVGILPKNVEFAEIAPILCAGVTVYKGLKQTNARPGQWV-AISGIG 180
Query: 162 GVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKEN 207
           G+G + +Q A+   G            L+L R LGA L ++  +E+
Sbjct: 181 GLGHVAVQYAR-AMGLHVAAIDIDDAKLELARKLGASLTVNARQED 225

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 105/226 (46%), Gaps = 26/226 (11%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V +++   +  LK +  VE P++   +VL+++ A  +   D     G +      L
Sbjct: 1   MKAAVVEQF---KEPLKIK-EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPK-L 55
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV----------YGDI----NEKALDHPKR---- 102
           P IPG++  G+VE+VG  V   KVGD V          + D      E   +H K     
Sbjct: 56  PLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYS 115
Query: 103 -NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG 161
            +G  AEY     + +   P NLSF EAA +  A  T Y+ L+ +    G+ + +  G G
Sbjct: 116 VDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIY-GIG 174
Query: 162 GVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKEN 207
           G+G + +Q AK   G            L+L + LGADL ++  KE+
Sbjct: 175 GLGHVAVQYAK-AMGLNVVAVDIGDEKLELAKELGADLVVNPLKED 219

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 26/226 (11%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V +++   +  LK +  VE P++   +VL+++ A  +   D     G +      L
Sbjct: 1   MKAAVVEQF---KEPLKIK-EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPK-L 55
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV----------YGDI----NEKALDHPKR---- 102
           P IPG++  G+VE+VG  V   KVGD V          + D      E   +H K     
Sbjct: 56  PLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYS 115
Query: 103 -NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG 161
            +G  AEY     + +   P NLSF EAA +  A  T Y+ L+ +    G+ + +  G G
Sbjct: 116 VDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIY-GIG 174
Query: 162 GVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKEN 207
           G G + +Q AK   G            L+L + LGADL ++  KE+
Sbjct: 175 GFGHVAVQYAK-AMGLNVVAVDIGDEKLELAKELGADLVVNPLKED 219

>pdb|4A0S|A Chain A, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf In Complex With Nadp And 2-Octenoyl-Coa Length = 447

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 45/269 (16%)
Query: 22  VEVPSLREDQVLIKVVAAALN----------PI-------DFKRMLGAFSATDSPLPTIP 64
           V +P L  D+VL+ V+A+++N          PI          R  G  +  D P   + 
Sbjct: 55  VPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVL- 113
Query: 65  GYDVAGVVEKVGSQVKKFKVGDEV--------------YGD----INEKALDHPKRNGSL 106
           G D +GVV + G  V+++K GD V              +GD      ++A       G L
Sbjct: 114 GSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGL 173
Query: 107 AEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL--ERSA-FSAGKSILVLGGAGGV 163
           AEY  V  + L  KP +L++ EAA  PL   TAY  L  +R A    G  +L+ G +GG+
Sbjct: 174 AEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGL 233
Query: 164 GTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTK----ENIEDLPEKFDVVF 219
           G+  IQ  K+  G               +R+LG DL I+  +    ++I D P +     
Sbjct: 234 GSYAIQFVKNGGGIPVAVVSSAQKEA-AVRALGCDLVINRAELGITDDIADDPRRVVETG 292
Query: 220 DAVGKMCISIVYQKCD-KFQEKSLINFGL 247
             + K+ +    ++ D  F+    + FGL
Sbjct: 293 RKLAKLVVEKAGREPDIVFEHTGRVTFGL 321

>pdb|3GOH|A Chain A, Crystal Structure Of Alcohol Dehydrogenase Superfamily Protein (np_718042.1) From Shewanella Oneidensis At 1.55 A Resolution Length = 315

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 2   KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLP 61
           + W Y+   +S ++     +V++P+L  D +L++  A  +NP+D+K +    +  +    
Sbjct: 6   QVWAYQTKTHSVTL----NSVDIPALAADDILVQNQAIGINPVDWKFIKA--NPINWSNG 59
Query: 62  TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKP 121
            +PG D AGV+ KVG++V    +G  V    + K      R+GS AE+T +  + +   P
Sbjct: 60  HVPGVDGAGVIVKVGAKVDSKXLGRRVAYHTSLK------RHGSFAEFTVLNTDRVXTLP 113
Query: 122 KNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLG 158
            NLSF  AA+LP    TA++  E+   +  + +L++G
Sbjct: 114 DNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVG 150

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 90/203 (44%), Gaps = 25/203 (12%)
Query: 24  VPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFK 83
           VP   E  ++++ +A +LN  D K +L      D   P +P  D +GVVE VG  V +F+
Sbjct: 48  VPEAGEHDIIVRTLAVSLNYRD-KLVLETGXGLDLAFPFVPASDXSGVVEAVGKSVTRFR 106
Query: 84  VGDEVYGDINEKALD------------------HPKRNGSLAEYTAVEENLLALKPKNLS 125
            GD V        LD                  HP   G L+EY  + E      PK+L 
Sbjct: 107 PGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHP---GVLSEYVVLPEGWFVAAPKSLD 163
Query: 126 FVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXX 184
             EA++LP A  TA+  L E+    AG  ++V  G GGV    +Q+AK   G        
Sbjct: 164 AAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQ-GTGGVALFGLQIAKAT-GAEVIVTSS 221
Query: 185 XXXXLDLLRSLGADLAIDYTKEN 207
               LD   +LGAD  I+  +E+
Sbjct: 222 SREKLDRAFALGADHGINRLEED 244

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V + +G   ++      V +P     Q+ + + A+ +   D     G +    +P 
Sbjct: 26  MKAAVVRAFGKPLTI----DEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNP- 80
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKR------------------ 102
           P IPG++  G V  VGS VK  K GD V       A  H +                   
Sbjct: 81  PFIPGHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCEEQLNTGYS 140
Query: 103 -NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG 161
            NG  AEY   + N +   PKN+ F E A +  A  T Y+GL+ +    G  + V+ G G
Sbjct: 141 VNGGFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVTVYKGLKVTDTKPGDWV-VISGIG 199
Query: 162 GVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAID 202
           G+G M +Q A+   G            LDL R LGA + ++
Sbjct: 200 GLGHMAVQYAR-AMGLNVAAVDIDDRKLDLARRLGATVTVN 239

>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From Rhizobium Etli Cfn 42 Length = 353

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 17/206 (8%)
Query: 24  VPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFK 83
           +P   E +VL++  A  +N  D  +  G++       P + G +++G +  VG  V  + 
Sbjct: 50  LPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL-GLELSGEIVGVGPGVSGYA 108
Query: 84  VGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL 143
           VGD+V G  N          G+ AEY  +    +   PK    V+AA+LP    T +  L
Sbjct: 109 VGDKVCGLAN---------GGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANL 159
Query: 144 -ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAID 202
            + +  + G+S+L+ GG  G+GT  IQLA+  FG             +    LGA   I+
Sbjct: 160 FQXAGLTEGESVLIHGGTSGIGTTAIQLAR-AFGAEVYATAGSTGKCEACERLGAKRGIN 218
Query: 203 YTKENI-----EDLPEKFDVVFDAVG 223
           Y  E+       +  +  D++ D +G
Sbjct: 219 YRSEDFAAVIKAETGQGVDIILDXIG 244

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP- 59
           M+A V   +G    +  F     +P  ++ ++ I+V A  LN ID     G     D+P 
Sbjct: 4   MRAVVLAGFGGLNKLRLFRK--AMPEPQDGELKIRVKACGLNFIDLMVRQGNI---DNPP 58
Query: 60  -LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLA 118
             P +PG++ +G+VE +G  VK +++GD V   +N  A          AE        + 
Sbjct: 59  KTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNA---------WAEVVCTPVEFVY 109
Query: 119 LKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHV 174
             P ++SF EAA+ P+   TAY  L E +    G S+LV    GGVG  V QL   V
Sbjct: 110 KIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTV 166

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP--LPTIPGYDVAGVVEKVGSQV 79
           V  PS  E +VL+KV A+ALN  D  +  G +   D P     I G + +G V ++G   
Sbjct: 42  VAKPSPGEGEVLLKVAASALNRADLMQRQGQY---DPPPGASNILGLEASGHVAELGPGC 98
Query: 80  K-KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATET 138
           +  +K+GD     +           G  A+Y  V E LL   P+ L+  +AA++P A  T
Sbjct: 99  QGHWKIGDTAMALL---------PGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLT 149
Query: 139 AYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGA 197
           A++ L       AG  +L+  G  GVGT  IQL + + G            L +   LGA
Sbjct: 150 AFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTR-MAGAIPLVTAGSQKKLQMAEKLGA 208
Query: 198 DLAIDYTKENIEDLPEKF------DVVFDAVG 223
               +Y KE+  +   KF      +++ D +G
Sbjct: 209 AAGFNYKKEDFSEATLKFTKGAGVNLILDCIG 240

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 26/221 (11%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V + +G   ++      V VP     QV +K+ A+ +   D     G +    + L
Sbjct: 3   MKAAVVRAFGAPLTI----DEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPT-L 57
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV------------------YGDINEKALDHPKR 102
           P IPG++  G V  VGS V + K GD V                  +  + EK  +    
Sbjct: 58  PFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYS 117
Query: 103 -NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG 161
            NG   EY   + N + L P  + FVE A +  A  T Y+GL+ +    G+ + V+ G G
Sbjct: 118 VNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWV-VISGIG 176
Query: 162 GVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAID 202
           G+G + +Q A+   G            L+L R LGA++A++
Sbjct: 177 GLGHVAVQYAR-AMGLRVAAVDIDDAKLNLARRLGAEVAVN 216

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP--LPTIPGYDVAGVVEKVGSQV 79
           V  PS  E +VL+KV A+ALN  D  +  G +   D P     I G + +G V ++G   
Sbjct: 26  VAKPSPGEGEVLLKVAASALNRADLMQRQGQY---DPPPGASNILGLEASGHVAELGPGC 82
Query: 80  K-KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATET 138
           +  +K+GD     +           G  A+Y  V E LL   P+ L+  +AA++P A  T
Sbjct: 83  QGHWKIGDTAMALL---------PGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLT 133
Query: 139 AYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGA 197
           A++ L       AG  +L+  G  GVGT  IQL + + G            L +   LGA
Sbjct: 134 AFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTR-MAGAIPLVTAGSQKKLQMAEKLGA 192
Query: 198 DLAIDYTKENIEDLPEKF------DVVFDAVG 223
               +Y KE+  +   KF      +++ D +G
Sbjct: 193 AAGFNYKKEDFSEATLKFTKGAGVNLILDCIG 224

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 33/211 (15%)
Query: 21  NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPT----IPGYDVAGVVEKVG 76
           ++ VP  + +++LI V  + +   D     G     D PLP     + G++ AGVV  +G
Sbjct: 22  DIPVPKPKANELLINVKYSGVCHTDLHAWHG-----DWPLPVKLPLVGGHEGAGVVVGMG 76
Query: 77  SQVKKFKVGDEVYGDI----------------NEKALDHP-----KRNGSLAEYTAVEEN 115
             VK +K+GD  Y  I                NE    H        +GS  +Y   +  
Sbjct: 77  ENVKGWKIGD--YAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAV 134
Query: 116 LLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF 175
             A  P+     + A +  A  T Y+ L+ +   AG  + + G AGG+G++ +Q AK   
Sbjct: 135 QAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAK-AM 193
Query: 176 GXXXXXXXXXXXXLDLLRSLGADLAIDYTKE 206
           G             +L RS+G ++ ID+TKE
Sbjct: 194 GYRVLGIDGGEGKEELFRSIGGEVFIDFTKE 224

>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus Crotonyl Coa CarboxylaseREDUCTASE Length = 467

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 94/223 (42%), Gaps = 40/223 (17%)
Query: 22  VEVPSLREDQVLIKVVAAALN----------PID---FKRMLGAFSA----TDSPLPTIP 64
           V VP L   + L+ V+A+++N          P+    F    G  S      D P   I 
Sbjct: 81  VPVPELGPGEALVAVMASSVNYNSVWTSIFEPVSTFAFLERYGKLSPLTKRHDLPYHII- 139
Query: 65  GYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRN------------------GSL 106
           G D+AGVV + G  V  ++ GDEV        L+ P  +                  G L
Sbjct: 140 GSDLAGVVLRTGPGVNAWQPGDEVVAHCLSVELESPDGHDDTMLDPEQRIWGFETNFGGL 199
Query: 107 AEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL---ERSAFSAGKSILVLGGAGGV 163
           AE   V+ N L  KPK+L++ EAA+  L   TAY  L     +A   G ++L+ G +GG+
Sbjct: 200 AEIALVKTNQLMPKPKHLTWEEAAAPGLVNSTAYRQLVSRNGAAMKQGDNVLIWGASGGL 259
Query: 164 GTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKE 206
           G+   Q A    G             ++ RS+GA+  ID   E
Sbjct: 260 GSYATQFAL-AGGANPICVVSSPQKAEICRSMGAEAIIDRNAE 301

>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From Streptomyces Coelicolor A3(2) Length = 456

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 95/224 (42%), Gaps = 40/224 (17%)
Query: 21  NVEVPSLREDQVLIKVVAAALN----------PID-------FKRMLGAFSATDSPLPTI 63
           +V VP L   + L+ V+A+++N          P+        + R+       D P   I
Sbjct: 62  DVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVI 121
Query: 64  PGYDVAGVVEKVGSQVKKFKVGDEVYGDI-----------NEKALDHPKR-------NGS 105
            G D+AGVV + G  V  ++ GDEV               N+  LD  +R        G 
Sbjct: 122 -GSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGG 180
Query: 106 LAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL---ERSAFSAGKSILVLGGAGG 162
           LAE   V+ N L  KP +LS+ EAA+  L   TAY  L     +    G ++L+ G +GG
Sbjct: 181 LAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGG 240
Query: 163 VGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKE 206
           +G+   Q A    G             ++ R++GA+  ID   E
Sbjct: 241 LGSYATQFAL-AGGANPICVVSSPQKAEICRAMGAEAIIDRNAE 283

>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase Length = 295

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 102/230 (44%), Gaps = 37/230 (16%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWV K  G    +     ++  P   E +V+++V A  LN  D    LGA+     P 
Sbjct: 1   MKAWVLKRLGGPLEL----VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP- 55
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P IPG +V GVVE               Y  +  +        G LAE  AV +  L   
Sbjct: 56  PFIPGMEVVGVVE------------GRRYAALVPQ--------GGLAERVAVPKGALLPL 95
Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXX 180
           P+ LS  EAA+ P++  TAY  L+R+    G+ +LV   AG +GT  +Q+A+   G    
Sbjct: 96  PEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVAR-AMGLRVL 154
Query: 181 XXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEK------FDVVFDAVGK 224
                   L L  +LGA+ A  Y      ++PE+       D+V +  GK
Sbjct: 155 AAASRPEKLALPLALGAEEAATYA-----EVPERAKAWGGLDLVLEVRGK 199

>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From Thermus Thermophilus Hb8 And Its Complex With Nadph Length = 302

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 102/230 (44%), Gaps = 37/230 (16%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWV K  G    +     ++  P   E +V+++V A  LN  D    LGA+     P 
Sbjct: 1   MKAWVLKRLGGPLEL----VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP- 55
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P IPG +V GVVE               Y  +  +        G LAE  AV +  L   
Sbjct: 56  PFIPGMEVVGVVE------------GRRYAALVPQ--------GGLAERVAVPKGALLPL 95
Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXX 180
           P+ LS  EAA+ P++  TAY  L+R+    G+ +LV   AG +GT  +Q+A+   G    
Sbjct: 96  PEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVAR-AMGLRVL 154
Query: 181 XXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEK------FDVVFDAVGK 224
                   L L  +LGA+ A  Y      ++PE+       D+V +  GK
Sbjct: 155 AAASRPEKLALPLALGAEEAATYA-----EVPERAKAWGGLDLVLEVRGK 199

>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase From Bacillus Thuringiensis Length = 340

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 23/227 (10%)
Query: 6   YKEYGNSQSVLKFE-TNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIP 64
           + ++GN + VL+ E  N+E   L++++V ++++   +NP D   + GA+ A   PLP IP
Sbjct: 10  FHKFGNPKDVLQVEYKNIE--PLKDNEVFVRMLVRPINPSDLIPITGAY-AHRIPLPNIP 66
Query: 65  GYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKR-NGSLAEYTAVEENLLALKPKN 123
           GY+  G+VE VG+ V +  +G  V           P R  G+  EY     + +   P +
Sbjct: 67  GYEGVGIVENVGAFVSRELIGKRVL----------PLRGEGTWQEYVKTSADFVVPIPDS 116
Query: 124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG-GVGTMVIQLAKHVFGXXXXXX 182
           +    AA + +   TA+     +       +L++   G  +G +  QL++ +        
Sbjct: 117 IDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVT 176
Query: 183 XXXXXXLDLLRSLGADLAIDYTK----ENIEDLPEKF--DVVFDAVG 223
                  +LLR LGA   ID +     E + +L      D   D++G
Sbjct: 177 RNNKHTEELLR-LGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIG 222

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 93/234 (39%), Gaps = 41/234 (17%)
Query: 21  NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK 80
           NV +P    D +L+KV A  +   D   + G F +T    P   G++  G+V + GS V+
Sbjct: 39  NVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPSTP---PVTLGHEFCGIVVEAGSAVR 95
Query: 81  KFKVGDEVYGDINEKALDHPK------------------RNGSLAEYTAVE-----ENLL 117
               G  + GD N      P+                  R+G  AEY  V      E  L
Sbjct: 96  DIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPL 155
Query: 118 ALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGX 177
            L P + +F E    PLA      G++ S   AG ++ +LGG G +G + +QLA+     
Sbjct: 156 TLDPVHGAFCE----PLA--CCLHGVDLSGIKAGSTVAILGG-GVIGLLTVQLARLAGAT 208
Query: 178 XXXXXXXXXXXLDLLRSLGADLAIDYTKENIED--------LPEKFDVVFDAVG 223
                        L   +GA   +D +  ++ +        +P   DVV +  G
Sbjct: 209 TVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAG 262

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 95/205 (46%), Gaps = 28/205 (13%)
Query: 32  VLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEV-YG 90
           V+++  A  LN ID     G + A    LP+  G + AGVVE VG +V +FKVGD V YG
Sbjct: 31  VVVRNKAIGLNFIDTYYRSGLYPAPF--LPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYG 88
Query: 91  DINEKALDHPKRNGSLAEYTAV----EENLLALKPKNLSFVEAASLPLATETAYEGLERS 146
                        G L  Y+ V    E NL+ L   ++SF +AA+L L   T    L ++
Sbjct: 89  ------------TGPLGAYSEVHVLPEANLVKLA-DSVSFEQAAALMLKGLTVQYLLRQT 135
Query: 147 -AFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTK 205
                G+ IL    AGGVG++  Q AK   G                ++LGA   IDY+ 
Sbjct: 136 YQVKPGEIILFHAAAGGVGSLACQWAK-ALGAKLIGTVSSPEKAAHAKALGAWETIDYSH 194
Query: 206 ENIEDL------PEKFDVVFDAVGK 224
           E++          +K  VV+D VG+
Sbjct: 195 EDVAKRVLELTDGKKCPVVYDGVGQ 219

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATD------SPLPTIPGYDVAGVVEKV 75
           + VP  +  QVLIKV AA +   D     G F            LP   G+++AG +E+V
Sbjct: 18  IGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV 77
Query: 76  GSQVKKFKVGDEV------------YGDINEKAL-DHPKR-----NGSLAEYTAVEENLL 117
           G +V  +  GD V            Y  I E+ L D P+      +G+ AEY  V     
Sbjct: 78  GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKY 137
Query: 118 ALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGX 177
             K + L+ VEAA L  +  T Y  + +++    K++LV+G  GG+GTM +Q+AK V G 
Sbjct: 138 MYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA 197
Query: 178 XXXXXXXXXXXLDLLRSLGADLAIDYTKEN 207
                      ++  +  GAD  I+ + ++
Sbjct: 198 TIIGVDVREEAVEAAKRAGADYVINASMQD 227

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATD------SPLPTIPGYDVAGVVEKV 75
           + VP  +  QVLIKV AA +   D     G F            LP   G+++AG +E+V
Sbjct: 18  IGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV 77
Query: 76  GSQVKKFKVGDEV------------YGDINEKAL-DHPKR-----NGSLAEYTAVEENLL 117
           G +V  +  GD V            Y  I E+ L D P+      +G+ AEY  V     
Sbjct: 78  GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKY 137
Query: 118 ALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGX 177
             K + L+ VEAA L  +  T Y  + +++    K++LV+G  GG+GTM +Q+AK V G 
Sbjct: 138 MYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA 197
Query: 178 XXXXXXXXXXXLDLLRSLGADLAIDYTKEN 207
                      ++  +  GAD  I+ + ++
Sbjct: 198 TIIGVDVREEAVEAAKRAGADYVINASMQD 227

>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain From Modular Polyketide Synthase Length = 795

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 52/149 (34%), Positives = 70/149 (46%), Gaps = 16/149 (10%)
Query: 27  LREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGD 86
           L + +V I + AA +N  D    LG +    S      G + AGVV + G  V     GD
Sbjct: 236 LGDGEVRIAMRAAGVNFRDALIALGMYPGVASL-----GSEGAGVVVETGPGVTGLAPGD 290
Query: 87  EVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ER 145
            V G I       PK  G LA     +  ++   P   SF  AAS+P+   TAY  L + 
Sbjct: 291 RVMGMI-------PKAFGPLA---VADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDL 340
Query: 146 SAFSAGKSILVLGGAGGVGTMVIQLAKHV 174
           +    G+S+LV   AGGVG   IQLA+H+
Sbjct: 341 AGLRPGESLLVHSAAGGVGMAAIQLARHL 369

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATD------SPLPTIPGYDVAGVVEKV 75
           + VP  +  QVLIKV AA +   D     G F            LP   G+++AG +E+V
Sbjct: 18  IGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV 77
Query: 76  GSQVKKFKVGDEV------------YGDINEKAL-DHPKR-----NGSLAEYTAVEENLL 117
           G +V  +  GD V            Y  I E+ L D P+      +G+ AEY  V     
Sbjct: 78  GDEVVGYSKGDLVAVNPLQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKY 137
Query: 118 ALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGX 177
             K + L+ VEAA L  +  T Y  + +++    K++LV+G  GG+GTM +Q+AK V G 
Sbjct: 138 MYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA 197
Query: 178 XXXXXXXXXXXLDLLRSLGADLAIDYTKEN 207
                      ++  +  GAD  I+ + ++
Sbjct: 198 TIIGVDVREEAVEAAKRAGADYVINASMQD 227

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 23/204 (11%)
Query: 23  EVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKF 82
           E+ +++ ++ L+ +    +   D     G F    +   T+ G++  G+V+++G+ V   
Sbjct: 20  ELRAIKPNEALLDMEYCGVCHTDLHVAAGDFG---NKAGTVLGHEGIGIVKEIGADVSSL 76
Query: 83  KVGDEV--------YGDI------NEKALDHPKR-----NGSLAEYTAVEENLLALKPKN 123
           +VGD V         G        NE      K      +G +AE   V  +     P  
Sbjct: 77  QVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDG 136
Query: 124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXX 183
           L  +EA+S+  A  T Y+ ++ S    G   ++ G AGG+G + IQ AK+VFG       
Sbjct: 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFG-AGGLGNLAIQYAKNVFGAKVIAVD 195
Query: 184 XXXXXLDLLRSLGADLAIDYTKEN 207
                L+L + +GAD+ I+    N
Sbjct: 196 INQDKLNLAKKIGADVTINSGDVN 219

>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus Stearothermophilus Length = 328

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 96/220 (43%), Gaps = 25/220 (11%)
Query: 27  LREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL----PTIPGYDVAGVVEKVGSQVKKF 82
           L E  VL++V  +++N  D     G  S  D  +    P +PG D+AGVV  V SQ  +F
Sbjct: 28  LPEGDVLVRVHYSSVNYKD-----GLASIPDGKIVKTXPFVPGIDLAGVV--VSSQHPRF 80
Query: 83  KVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETA--- 139
           + GDEV     E  + H    G  +EY  +    L   PK L+  EA ++  A  TA   
Sbjct: 81  REGDEVIATGYEIGVTH---FGGYSEYARLHGEWLVPLPKGLTLKEAXAIGTAGFTAALS 137
Query: 140 YEGLERSAFSAGKS-ILVLGGAGGVGTMVIQ-LAKHVFGXXXXXXXXXXXXLDLLRSLGA 197
              LE    +  +  +LV G  GGVG++ +  LAK   G             D LR LGA
Sbjct: 138 IHRLEEHGLTPERGPVLVTGATGGVGSLAVSXLAKR--GYTVEASTGKAAEHDYLRVLGA 195
Query: 198 DLAI---DYTKENIEDL-PEKFDVVFDAVGKMCISIVYQK 233
              +   D   E I  L  +++    D VG   ++ V  +
Sbjct: 196 KEVLAREDVXAERIRPLDKQRWAAAVDPVGGRTLATVLSR 235

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 37/228 (16%)
Query: 11  NSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAG 70
           N +  +    +  VP   +  +L++     +N  D     G +  +  P P   G++  G
Sbjct: 35  NFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKP-PFDIGFEGIG 93
Query: 71  VVEKVG-SQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLL----ALKPKNLS 125
            V  +G S   ++ VG  V       A   P   GS AEYT V  ++     ++KP+ L+
Sbjct: 94  EVVALGLSASARYTVGQAV-------AYMAP---GSFAEYTVVPASIATPVPSVKPEYLT 143
Query: 126 FVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAK----HVFGXXXX 180
            + + +      TAY  L E    S GK +LV   AGG G   +QL+K    HV G    
Sbjct: 144 LLVSGT------TAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSS 197
Query: 181 XXXXXXXXLDLLRSLGADLAIDYTKENI-----EDLPEKFDVVFDAVG 223
                      L+SLG D  I+Y  E +     ++ PE  DVV+++VG
Sbjct: 198 DEKSA-----FLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVG 240

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 37/228 (16%)
Query: 11  NSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAG 70
           N +  +    +  VP   +  +L++     +N  D     G +  +  P P   G++  G
Sbjct: 14  NFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKP-PFDIGFEGIG 72
Query: 71  VVEKVG-SQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLL----ALKPKNLS 125
            V  +G S   ++ VG  V       A   P   GS AEYT V  ++     ++KP+ L+
Sbjct: 73  EVVALGLSASARYTVGQAV-------AYMAP---GSFAEYTVVPASIATPVPSVKPEYLT 122
Query: 126 FVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAK----HVFGXXXX 180
            + + +      TAY  L E    S GK +LV   AGG G   +QL+K    HV G    
Sbjct: 123 LLVSGT------TAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSS 176
Query: 181 XXXXXXXXLDLLRSLGADLAIDYTKENI-----EDLPEKFDVVFDAVG 223
                      L+SLG D  I+Y  E +     ++ PE  DVV+++VG
Sbjct: 177 DEKSA-----FLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVG 219

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 37/228 (16%)
Query: 11  NSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAG 70
           N +  +    +  VP   +  +L++     +N  D     G +  +  P P   G++  G
Sbjct: 43  NFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKP-PFDIGFEGIG 101
Query: 71  VVEKVG-SQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLL----ALKPKNLS 125
            V  +G S   ++ VG  V       A   P   GS AEYT V  ++     ++KP+ L+
Sbjct: 102 EVVALGLSASARYTVGQAV-------AYMAP---GSFAEYTVVPASIATPVPSVKPEYLT 151
Query: 126 FVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAK----HVFGXXXX 180
            + + +      TAY  L E    S GK +LV   AGG G   +QL+K    HV G    
Sbjct: 152 LLVSGT------TAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSS 205
Query: 181 XXXXXXXXLDLLRSLGADLAIDYTKENI-----EDLPEKFDVVFDAVG 223
                      L+SLG D  I+Y  E +     ++ PE  DVV+++VG
Sbjct: 206 DEKSA-----FLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVG 248

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 62  TIPGYDVAGVVEKVGSQVKKFKVGDEV--------YGDI------NEKALDHPKR----- 102
           T+ G++  G+V+++G+ V   +VGD V         G        NE      K      
Sbjct: 56  TVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSV 115
Query: 103 NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGG 162
           +G +AE   V  +     P  L  +EA+S+  A  T Y+ ++ S    G   ++ G AGG
Sbjct: 116 DGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFG-AGG 174
Query: 163 VGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKEN 207
           +G + IQ AK+VFG            L+L + +GAD+ I+    N
Sbjct: 175 LGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVIINSGDVN 219

>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone Oxidoreductase Complexed With Nadph Length = 327

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 104/233 (44%), Gaps = 36/233 (15%)
Query: 29  EDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIP---GYDVAGVVEKVGSQVKKFKVG 85
           E+++ ++  A  +N ID     G +     P P++P   G + AG+V KVGS VK  K G
Sbjct: 28  ENEIQVENKAIGINFIDTYIRSGLY-----PPPSLPSGLGTEAAGIVSKVGSGVKHIKAG 82
Query: 86  DEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK----PKNLSFVEAASLPLATETAYE 141
           D V                +L  Y++V  N++A K    P  +SF +AA+  L   T Y 
Sbjct: 83  DRVV-----------YAQSALGAYSSV-HNIIADKAAILPAAISFEQAAASFLKGLTVYY 130
Query: 142 GLERS-AFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLA 200
            L ++      +  L    AGGVG +  Q AK +                 L++ GA   
Sbjct: 131 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA-GAWQV 189
Query: 201 IDYTKEN-IEDLPE-----KFDVVFDAVGKMCISIVYQKCDKFQEKSL-INFG 246
           I+Y +E+ +E L E     K  VV+D+VG+       +  D  Q + L ++FG
Sbjct: 190 INYREEDLVERLKEITGGKKVRVVYDSVGRDTWE---RSLDCLQRRGLMVSFG 239

>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA------TDSPLPTIPGYDVAGVVEKV 75
           + VP  +  QVLIKV AA +   D     G F            LP   G+++AG +E+V
Sbjct: 18  IGVPKPKGPQVLIKVEAAGVCHSDVHXRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV 77
Query: 76  GSQVKKFKVGDEV------------YGDINEKAL-DHPKR-----NGSLAEYTAVEENLL 117
           G +V  +  GD V            Y  I E+ L D P+      +G+ AEY  V     
Sbjct: 78  GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKY 137
Query: 118 ALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGX 177
             K + L+ VEAA L  +  T Y  + +++    K++LV+G  GG+GT  +Q+AK V G 
Sbjct: 138 XYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTXAVQIAKAVSGA 197
Query: 178 XXXXXXXXXXXLDLLRSLGADLAIDYTKEN 207
                      ++  +  GAD  I+ + ++
Sbjct: 198 TIIGVDVREEAVEAAKRAGADYVINASMQD 227

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 99/253 (39%), Gaps = 35/253 (13%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA  Y E G+   V+   T    P+    ++L+KV AA L   D   M    +     L
Sbjct: 1   MKAVQYTEIGSEPVVVDIPT----PTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGL 56
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV--YGDINEKALDHPKRN--------------- 103
           P   G++  G V ++G  V  F VGD V  YG     A     R                
Sbjct: 57  PLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITP 116
Query: 104 ------GSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER--SAFSAGKSIL 155
                 GS+AEY  V+     +   +L  V AA L  A  T Y  + R       G + +
Sbjct: 117 PGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAV 176
Query: 156 VLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDY---TKENIEDLP 212
           V+G  GG+G + IQ+ + V              L L R +GAD A+       + I +L 
Sbjct: 177 VIG-VGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELT 235
Query: 213 --EKFDVVFDAVG 223
             +    VFD VG
Sbjct: 236 GGQGATAVFDFVG 248

>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester Reductase (Cgi- 63) Length = 357

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 19/176 (10%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           ++A VY  +G+   V++ + N+E+ ++R   V +K++AA +NP D   + G +      L
Sbjct: 27  VRALVYGHHGDPAKVVELK-NLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPE-L 84
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTA----VEENL 116
           P + G +    V  VGS V   K GD V              N  L  +       EE L
Sbjct: 85  PAVGGNEGVAQVVAVGSNVTGLKPGDWVI-----------PANAGLGTWRTEAVFSEEAL 133
Query: 117 LALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLA 171
           + + P ++    AA+L +   TAY  L +      G S++      GVG  VIQ+A
Sbjct: 134 IQV-PSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIA 188

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 101/238 (42%), Gaps = 30/238 (12%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M A ++K+ G    V +    V+V S    QV ++  A  +N +D     G       PL
Sbjct: 3   MAAVIHKKGGPDNFVWE---EVKVGSPGPGQVRLRNTAIGVNFLDTYHRAG----IPHPL 55
Query: 61  -----PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEEN 115
                P + G++ A VVE+VG  V  F VG+ V   +       P       E     E 
Sbjct: 56  VVGEPPIVVGFEAAAVVEEVGPGVTDFTVGERVCTCL-------PPLGAYSQERLYPAEK 108
Query: 116 LLALKPKNLSF--VEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAK 172
           L+ + PK+L    V  A L L   TA   L ++     G  +L+   AGG+G +++  A+
Sbjct: 109 LIKV-PKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWAR 167
Query: 173 HVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKF------DVVFDAVGK 224
           H  G             +  R LG    I+Y+ ++  ++  +       DVV+D++GK
Sbjct: 168 H-LGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGK 224

>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human Fas Ii Length = 344

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 19/176 (10%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           ++A VY  +G+   V++ + N+E+ ++R   V +K++AA +NP D   + G +      L
Sbjct: 14  VRALVYGHHGDPAKVVELK-NLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPE-L 71
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTA----VEENL 116
           P + G +    V  VGS V   K GD V              N  L  +       EE L
Sbjct: 72  PAVGGNEGVAQVVAVGSNVTGLKPGDWVI-----------PANAGLGTWRTEAVFSEEAL 120
Query: 117 LALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLA 171
           + + P ++    AA+L +   TAY  L +      G S++      GVG  VIQ+A
Sbjct: 121 IQV-PSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIA 175

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 97/227 (42%), Gaps = 28/227 (12%)
Query: 15  VLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEK 74
           V+K+E +  VPS+ E+++LIK     +N I+     G +       P + G + +G V  
Sbjct: 22  VIKYE-DYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK---PYVLGREASGTVVA 77
Query: 75  VGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK-PKN-----LSFVE 128
            G  V  F+VGD+V              N + A+Y+ +      +K PK      L    
Sbjct: 78  KGKGVTNFEVGDQV----------AYISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYA 127
Query: 129 AASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXX 188
           A  L + T  ++   E      G  +L+   AGGVG ++ QL K + G            
Sbjct: 128 AGLLQVLTALSFTN-EAYHVKKGDYVLLFAAAGGVGLILNQLLK-MKGAHTIAVASTDEK 185
Query: 189 LDLLRSLGADLAIDYTKENIEDLPEKF------DVVFDAVGKMCISI 229
           L + +  GA+  I+ +KE+I     KF      D  FD+VGK    I
Sbjct: 186 LKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFEI 232

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 108/267 (40%), Gaps = 54/267 (20%)
Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKR----MLGAFSAT 56
           + A +YK     Q+ L+ E    +P  +ED+VL+++    +   D        +  F   
Sbjct: 6   LSAVLYK-----QNDLRLEQR-PIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVK 59
Query: 57  DSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVY---------------GDINEKA----L 97
           D   P + G++ +G V KVG  VK  K GD V                G  N        
Sbjct: 60  D---PMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC 116
Query: 98  DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILV 156
             P  +G+LA Y     +     P N+S  E A L PL+         R+    G ++LV
Sbjct: 117 ATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLS--VGVHACRRAGVQLGTTVLV 174
Query: 157 LGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGAD--LAIDYTKEN------- 207
           + GAG +G +V  LA   +G            L++ ++ GAD  L +D  KE        
Sbjct: 175 I-GAGPIG-LVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIER 232
Query: 208 ----IEDLPEKFDVVFDAVG-KMCISI 229
               I DLP   +V  D  G + CI+I
Sbjct: 233 IRSAIGDLP---NVTIDCSGNEKCITI 256

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 21  NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK 80
           +V +P  + ++VLI++  A +   D +   G  +     LP I G++ AG + +VG ++ 
Sbjct: 20  DVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVG-ELA 78
Query: 81  KFKVGDEV-----YGDINEKALDHPK-------------RNGSLAEYTAVEENLLALKPK 122
           K K GD V     +GD+  +     K              NG  +EY  V+ +   +K  
Sbjct: 79  KVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKLN 138
Query: 123 NLSFVEAASLPLATETAYEGLER-----SAFSAGKSILVLGGAGGVGTMVIQLAKHVF 175
           +LS VEAA L  A  T+   + +     S F+  + ++++ G GG+    IQ+ K + 
Sbjct: 139 SLSPVEAAPLADAGTTSMGAIRQALPFISKFA--EPVVIVNGIGGLAVYTIQILKALM 194

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 31/225 (13%)
Query: 16  LKFETNVEVPSLREDQVLIKVVAAALNPIDFKRM----LGAFSATDSPLPTIPGYDVAGV 71
           L+ E N  +P    ++VL+++ +  +   D        +G F       P + G++ +G 
Sbjct: 19  LRLE-NYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKK---PMVLGHEASGT 74
Query: 72  VEKVGSQVKKFKVGDEV---------------YGDINEKA----LDHPKRNGSLAEYTAV 112
           VEKVGS VK  K GD V                G  N          P  +G+L  +   
Sbjct: 75  VEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKH 134
Query: 113 EENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLA 171
                   P N++F E A + PL+         R   + G  +LV G AG +G + + +A
Sbjct: 135 NAAFCYKLPDNVTFEEGALIEPLSV--GIHACRRGGVTLGHKVLVCG-AGPIGMVTLLVA 191
Query: 172 KHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKFD 216
           K +              L   + +GADL +  +KE+ +++  K +
Sbjct: 192 KAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVE 236

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 31/168 (18%)
Query: 32  VLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEV--- 88
           VLI ++ A +   D       +   +   P IPG+++AG++++VG  VKKFK+GD V   
Sbjct: 32  VLIDILYAGICHSDIHSAYSEWK--EGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVG 89
Query: 89  -------------------------YGDINEKALDHPKRNGSLAEYTAVEENLLALKPKN 123
                                      D  +   D+    G  +    V+EN +    KN
Sbjct: 90  CFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKN 149
Query: 124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLA 171
               + A L  A  T Y  L+ S  + G  + V  G GG+G+M ++ A
Sbjct: 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGV-AGFGGLGSMAVKYA 196

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 23/176 (13%)
Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV---------------YGDINEKA----LDHPK 101
           P + G++ +G VEKVGS VK  K GD V                G  N          P 
Sbjct: 64  PXVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKXGRYNLSPSIFFCATPP 123
Query: 102 RNGSLAEYTAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLGGA 160
            +G+L  +           P N++F E A + PL+         R   + G  +LV G A
Sbjct: 124 DDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSV--GIHACRRGGVTLGHKVLVCG-A 180
Query: 161 GGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKFD 216
           G +G + + +AK                L   + +GADL +  +KE+ +++  K +
Sbjct: 181 GPIGXVTLLVAKAXGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVE 236

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 24  VPSLREDQVLIKVVAAALNPIDFKRM-LGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKF 82
           VP     ++L++V AA++   D       A++      P + G++ +GVVE VG  V++ 
Sbjct: 20  VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRP 79
Query: 83  KVGDEV-------------------YGDINEKALDHPKRNGSLAEYTAVEENLLALKPKN 123
           +VGD V                   +  +N + L    R+G  AEY  V      + PK+
Sbjct: 80  QVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGV-DRDGGFAEYVVVPAENAWVNPKD 138
Query: 124 LSFVEAASL-PL--ATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAK 172
           L F  AA L P   A  T Y G    +  +GKS+L+  GAG +G M   + +
Sbjct: 139 LPFEVAAILEPFGNAVHTVYAG----SGVSGKSVLIT-GAGPIGLMAAMVVR 185

>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From Thermus Thermophilus Hb8 And Its Complex With Nadph Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 95/229 (41%), Gaps = 37/229 (16%)
Query: 2   KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLP 61
           KAWV K  G    +     ++  P   E +V+++V A  LN  D    LGA+     P P
Sbjct: 2   KAWVLKRLGGPLEL----VDLPEPEAEEGEVVLRVEAVGLNFADHLXRLGAYLTRLHP-P 56
Query: 62  TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKP 121
            IP                   V    Y  +  +        G LAE  AV +  L   P
Sbjct: 57  FIP------------GXEVVGVVEGRRYAALVPQ--------GGLAERVAVPKGALLPLP 96
Query: 122 KNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXX 181
           + LS  EAA+ P++  TAY  L+R+    G+ +LV   AG +GT  +Q+A+   G     
Sbjct: 97  EGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVAR-AXGLRVLA 155
Query: 182 XXXXXXXLDLLRSLGADLAIDYTKENIEDLPEK------FDVVFDAVGK 224
                  L L  +LGA+ A  Y      ++PE+       D+V +  GK
Sbjct: 156 AASRPEKLALPLALGAEEAATYA-----EVPERAKAWGGLDLVLEVRGK 199

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 31/225 (13%)
Query: 16  LKFETNVEVPSLREDQVLIKVVAAALNPIDFKRM----LGAFSATDSPLPTIPGYDVAGV 71
           L+ E N  +P    ++VL+K+ +  +   D        +G F       P + G++ +G 
Sbjct: 18  LRLE-NYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKK---PMVLGHEASGT 73
Query: 72  VEKVGSQVKKFKVGDEV------------YGDINEKALD-------HPKRNGSLAEYTAV 112
           V KVGS V+  + GD V            +  I    L         P  +G+L  +   
Sbjct: 74  VVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKH 133
Query: 113 EENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLA 171
             N     P N++F E A + PL+         R+  + G  +LV  GAG +G + +  A
Sbjct: 134 NANFCYKLPDNVTFEEGALIEPLS--VGIHACRRAGVTLGNKVLVC-GAGPIGLVNLLAA 190
Query: 172 KHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKFD 216
           K +              L   + +GAD  ++ + E+ E++ +K +
Sbjct: 191 KAMGAAQVVVTDLSASRLSKAKEVGADFILEISNESPEEIAKKVE 235

>pdb|1TT7|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 11  NSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATD--SPLPTIPGYDV 68
           N+  V      +    L +D VLIKV   A + I++K  L   +  +     P I G D 
Sbjct: 13  NADDVSVHVKTISTEDLPKDGVLIKV---AYSGINYKDGLAGKAGGNIVREYPLILGIDA 69
Query: 69  AGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVE 128
           AG V  V S   +F  GDEV     E  +    R+G L+EY +V  + L   P+NLS  E
Sbjct: 70  AGTV--VSSNDPRFAEGDEVIATSYELGV---SRDGGLSEYASVPGDWLVPLPQNLSLKE 124
Query: 129 AASLPLATETAYEGLER 145
           A     A  TA   + R
Sbjct: 125 AXVYGTAGFTAALSVHR 141

>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12- Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase Length = 333

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 110/251 (43%), Gaps = 37/251 (14%)
Query: 2   KAWVYKEYGN---SQSVLKFETNVEVPSLREDQVLIKVVAAALNP---IDFKRML-GAFS 54
           K+W  K++     +QS  + +T VE+P L+  +VL++ +  +++P   I  KR+  GA  
Sbjct: 9   KSWTLKKHFQGKPTQSDFELKT-VELPPLKNGEVLLEALFLSVDPYMRIASKRLKEGA-- 65
Query: 55  ATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEE 114
                   + G  VA VVE   S+   F  G  V          H   +G   E      
Sbjct: 66  -------VMMGQQVARVVE---SKNSAFPAGSIVLA--QSGWTTHFISDGKGLE------ 107
Query: 115 NLLALKPKNLSFVEA-ASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAK 172
            LL   P  L    A  ++ +   TAY GL E      G+++LV   AG VG++V Q+AK
Sbjct: 108 KLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAK 167
Query: 173 HVFGXXXXXXXXXXXXLDLLRSLGADLAIDY-TKENIEDL-----PEKFDVVFDAVGKMC 226
            + G            +  L+ +G D A +Y T  ++E+      P+ +D  FD VG   
Sbjct: 168 -LKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEF 226
Query: 227 ISIVYQKCDKF 237
           ++ V  +   F
Sbjct: 227 LNTVLSQMKDF 237

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 22/206 (10%)
Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRM-LGAFSATDSPLPTIPGYDVAGVVEKVGSQVK 80
           V+VP     +VLIKV+A ++   D        ++ +    P I G++VAG V ++G  V+
Sbjct: 21  VDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGVE 80
Query: 81  KFKVGDEVYGDIN---------EKALDHPKRN---------GSLAEYTAVEENLLALKPK 122
             +VGD V  + +          +   H  +N         G  AEY  V    +   PK
Sbjct: 81  GIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPK 140
Query: 123 NLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXX 182
           ++   E A+L      A + +     S GKS+L+  GAG +G + I +AK          
Sbjct: 141 SIP-PEYATLQEPLGNAVDTVLAGPIS-GKSVLIT-GAGPLGLLGIAVAKASGAYPVIVS 197
Query: 183 XXXXXXLDLLRSLGADLAIDYTKENI 208
                  +L + +GAD  I+  +E++
Sbjct: 198 EPSDFRRELAKKVGADYVINPFEEDV 223

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 22/206 (10%)
Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRM-LGAFSATDSPLPTIPGYDVAGVVEKVGSQVK 80
           V+VP     +VLIKV+A ++   D        ++ +    P I G++VAG V ++G  V+
Sbjct: 22  VDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGVE 81
Query: 81  KFKVGDEVYGDIN---------EKALDHPKRN---------GSLAEYTAVEENLLALKPK 122
             +VGD V  + +          +   H  +N         G  AEY  V    +   PK
Sbjct: 82  GIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPK 141
Query: 123 NLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXX 182
           ++   E A+L      A + +     S GKS+L+  GAG +G + I +AK          
Sbjct: 142 SIP-PEYATLQEPLGNAVDTVLAGPIS-GKSVLIT-GAGPLGLLGIAVAKASGAYPVIVS 198
Query: 183 XXXXXXLDLLRSLGADLAIDYTKENI 208
                  +L + +GAD  I+  +E++
Sbjct: 199 EPSDFRRELAKKVGADYVINPFEEDV 224

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 22 VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK 81
          VEV   +  +V IK+VAA +   D   + G   A   PLP I G++ AG+VE +G  V  
Sbjct: 26 VEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVA---PLPVIAGHEAAGIVESIGEGVTT 82
Query: 82 FKVGDEV 88
           + GD+V
Sbjct: 83 VRPGDKV 89

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 22 VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK 81
          VEV   +  +V IK+VAA +   D   + G   A   PLP I G++ AG+VE +G  V  
Sbjct: 26 VEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVA---PLPVIAGHEAAGIVESIGEGVTT 82
Query: 82 FKVGDEV 88
           + GD+V
Sbjct: 83 VRPGDKV 89

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 36/199 (18%)
Query: 24  VPSLR-EDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKF 82
           +P ++ +D+V +K+ ++ L   D  R+   F       P   G++ +G ++ VGS V   
Sbjct: 19  IPEIKHQDEVRVKIASSGLCGSDLPRI---FKNGAHYYPITLGHEFSGYIDAVGSGVDDL 75
Query: 83  KVGDEV------------------YGDINEKALDHPKRNGSLAEYTAVE-ENLLALKPKN 123
             GD V                  Y    +      +R+G  AEY  V+ +N+ AL P +
Sbjct: 76  HPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFAL-PTD 134
Query: 124 L-----SFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXX 178
           +     +F+E  ++ L      +G E       K+++++ GAG +G + IQ A  +    
Sbjct: 135 MPIEDGAFIEPITVGLHAFHLAQGCEN------KNVIII-GAGTIGLLAIQCAVALGAKS 187
Query: 179 XXXXXXXXXXLDLLRSLGA 197
                     L L +S GA
Sbjct: 188 VTAIDISSEKLALAKSFGA 206

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 1  MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           KA V  E G   S+      +EV   +  +V IK++A A+   D   + GA    +   
Sbjct: 7  CKAAVAWEAGKPLSI----EEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGA--DPEGCF 60
Query: 61 PTIPGYDVAGVVEKVGSQVKKFKVGDEV 88
          P I G++ AG+VE VG  V K K GD V
Sbjct: 61 PVILGHEGAGIVESVGEGVTKLKAGDTV 88

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 1  MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           KA V  E G   S+      +EV   +  +V IK++A A+   D   + GA    +   
Sbjct: 8  CKAAVAWEAGKPLSI----EEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGA--DPEGCF 61
Query: 61 PTIPGYDVAGVVEKVGSQVKKFKVGDEV 88
          P I G++ AG+VE VG  V K K GD V
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTV 89

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 1  MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           KA V  E G   S+      +EV   +  +V IK++A A+   D   + GA    +   
Sbjct: 8  CKAAVAWEAGKPLSI----EEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGA--DPEGCF 61
Query: 61 PTIPGYDVAGVVEKVGSQVKKFKVGDEV 88
          P I G++ AG+VE VG  V K K GD V
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTV 89

>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 63  IPGYDVAGVVEKVGSQVKKFKVGDEV--------YGDINEKALDHPKRNGSL-------- 106
           I G++  G + KVGS VK+ KVGD+V        +G+  E    +P  +G +        
Sbjct: 56  ILGHEAVGQIVKVGSLVKRLKVGDKVIVPAITPDWGE-EESQRGYPMHSGGMLGGWKFSN 114
Query: 107 ------AEYTAVEE--NLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLG 158
                 +E   V E    LAL P+++   +A  L     T + G E +    G ++ V+ 
Sbjct: 115 FKDGVFSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGAELANIKLGDTVCVI- 173
Query: 159 GAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENI 208
           G G VG M +  A H+               D+    GA   I+Y   +I
Sbjct: 174 GIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDI 223

>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 63  IPGYDVAGVVEKVGSQVKKFKVGDEV--------YGDINEKALDHPKRNGSL-------- 106
           I G++  G + KVGS VK+ KVGD+V        +G+  E    +P  +G +        
Sbjct: 56  ILGHEAVGQIVKVGSLVKRLKVGDKVIVPAITPDWGE-EESQRGYPMHSGGMLGGWKFSN 114
Query: 107 ------AEYTAVEE--NLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLG 158
                 +E   V E    LAL P+++   +A  L     T + G E +    G ++ V+ 
Sbjct: 115 FKDGVFSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGAELANIKLGDTVCVI- 173
Query: 159 GAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENI 208
           G G VG M +  A H+               D+    GA   I+Y   +I
Sbjct: 174 GIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDI 223

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 22 VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK 81
          VEV   +  +V IK+VAA +   D   + G      +PLP I G++ AG+VE VG  V  
Sbjct: 26 VEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLV---TPLPVILGHEAAGIVESVGEGVTT 82
Query: 82 FKVGDEV 88
           K GD+V
Sbjct: 83 VKPGDKV 89

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 22 VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK 81
          VEV   +  +V IK+VA  +   D   + G      +PLP I G++ AG+VE VG  V  
Sbjct: 26 VEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMV---TPLPVILGHEAAGIVESVGEGVTT 82
Query: 82 FKVGDEV 88
           K GD+V
Sbjct: 83 VKPGDKV 89

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 24/171 (14%)
Query: 63  IPGYDVAGVVEKVGSQVKKFKVGDEV--------YGDINEKALDHPKRNGSLA------- 107
           I G++  G V +VGS+VK FK GD V        +  +  +A      NG LA       
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNF 115
Query: 108 ------EYTAVEEN--LLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGG 159
                 EY  V +    LA+ PK++    A  +     T + G E +    G S++V+ G
Sbjct: 116 KDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIEMGSSVVVI-G 174
Query: 160 AGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIED 210
            G VG M I  AK                ++  +  GA   ++Y   +IED
Sbjct: 175 IGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIED 225

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 22 VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK 81
          VEV   +  +V IK+VA  +   D + + G      +PLP I G++ AG+VE +G  V  
Sbjct: 26 VEVAPPKAHEVRIKMVATGICRSDDQVVSGTLV---TPLPVIAGHEAAGIVESIGEGVTT 82
Query: 82 FKVGDEV 88
           + GD+V
Sbjct: 83 VRPGDKV 89

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 24/133 (18%)
Query: 63  IPGYDVAGVVEKVGSQVKKFKVGDEV--------YGDINEKALDHPKRNGSLA------- 107
           I G++  G V +VGS+VK FK GD V        +  +  +A      NG LA       
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNF 115
Query: 108 ------EYTAVEEN--LLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGG 159
                 EY  V +    LA+ PK++    A  +     T + G E +    G S++V+ G
Sbjct: 116 KDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVVVI-G 174
Query: 160 AGGVGTMVIQLAK 172
            G VG M I  AK
Sbjct: 175 IGAVGLMGIAGAK 187

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 22 VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATD----SPLPTIPGYDVAGVVEKVGS 77
          +EV   +  +V I+V+A  + P D        +ATD    +  P + G++ AG+VE VG 
Sbjct: 26 IEVSPPKACEVRIQVIATCVCPTDI-------NATDPKKKALFPVVLGHECAGIVESVGP 78
Query: 78 QVKKFKVGDEV 88
           V  FK GD+V
Sbjct: 79 GVTNFKPGDKV 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	2e-99
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-93
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	9e-92
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	1e-88
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	7e-88
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	5e-86
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	8e-79
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	6e-66
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	5e-63
3gms_A	340	Putative NADPH:quinone reductase; structural genom	2e-62
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-60
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	6e-60
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	2e-59
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	5e-59
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	1e-58
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	3e-57
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	3e-57
4eye_A	342	Probable oxidoreductase; structural genomics, niai	1e-56
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	3e-56
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	5e-53
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	3e-51
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	1e-48
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	2e-48
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	3e-48
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	2e-47
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	2e-47
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	1e-46
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-42
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	9e-41
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	2e-38
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	8e-38
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	2e-36
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	8e-36
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	9e-36
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-33
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	2e-33
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	9e-33
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	4e-32
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	7e-32
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	1e-31
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	9e-31
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	1e-29
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-29
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	7e-26
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	1e-25
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	4e-25
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	4e-24
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	6e-22
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	1e-20
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	3e-20
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	7e-19
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	7e-19
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	4e-18
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	3e-17
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	4e-17
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	5e-17
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	5e-17
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	7e-15
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	7e-14
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	8e-14
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	2e-13
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	4e-13
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	1e-12
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-12
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	2e-12
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	2e-12
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	3e-12
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	6e-12
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	5e-05
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	5e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	7e-04

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  292 bits (749), Expect = 2e-99
 Identities = 83/227 (36%), Positives = 118/227 (51%), Gaps = 13/227 (5%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAF---SATD 57
           MKA  + ++G    VLK       P  R++Q+LIKV AA+LNPID+K   G+        
Sbjct: 7   MKAIQFDQFGPP-KVLKLVD-TPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLK 64

Query: 58  SPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLL 117
           + LP+  GYD +G V ++GS V    +GD+V G         P      AEY     + +
Sbjct: 65  NNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIA-----GFPDHPCCYAEYVCASPDTI 119

Query: 118 ALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA 177
             K + LSF++AASLP A  TA + L ++    G  +L+  GAGGVG + IQLAK   G 
Sbjct: 120 IQKLEKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQ-KGT 178

Query: 178 SKVAATSSTAKLDLLRSLGADLAIDYTKENIED-LPEKFDVVFDAVG 223
             V  T+S      L++LGA+  I+Y +E+    +    D V D VG
Sbjct: 179 -TVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVG 224

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score =  277 bits (710), Expect = 1e-93
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 16/223 (7%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+      Y      +    +V++P+L  D +L++  A  +NP+D+K +       +   
Sbjct: 2   MEQHQVWAYQTKTHSVTLN-SVDIPALAADDILVQNQAIGINPVDWKFIKANP--INWSN 58

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
             +PG D AGV+ KVG++V    +G  V    +       KR+GS AE+T +  + +   
Sbjct: 59  GHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTS------LKRHGSFAEFTVLNTDRVMTL 112

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           P NLSF  AA+LP    TA++  E+   +  + +L+  G G V  ++ Q+  +  G   V
Sbjct: 113 PDNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLI-VGFGAVNNLLTQMLNN-AGY-VV 169

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVG 223
              S++    L    G              + +K+  +FDAV 
Sbjct: 170 DLVSASLSQALAAKRGVRHLYREP----SQVTQKYFAIFDAVN 208

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score =  274 bits (702), Expect = 9e-92
 Identities = 85/245 (34%), Positives = 126/245 (51%), Gaps = 31/245 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLGAFSA---- 55
             AWV  +YG +  VL+F  N+ +P +   ++V++KV AA++NPID     G  +     
Sbjct: 22  SMAWVIDKYGKN-EVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNM 80

Query: 56  ---------TDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSL 106
                         P   G DV+GVV + G  VK FK GDEV+  +       P + G+L
Sbjct: 81  KRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTL 134

Query: 107 AEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-----FSAGKSILVLGGAG 161
           +E+  V  N ++ KPK+L+  +AASLP    TA+  + +          GK +L+LG +G
Sbjct: 135 SEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASG 194

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL---PEKFDVV 218
           GVGT  IQ+ K  + A  V A  S    +L+R LGAD  IDY   ++E+     + FD +
Sbjct: 195 GVGTFAIQVMKA-WDA-HVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFI 252

Query: 219 FDAVG 223
            D VG
Sbjct: 253 LDNVG 257

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score =  265 bits (680), Expect = 1e-88
 Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 23/235 (9%)

Query: 1   MKAWVYKEYGNSQSVLKFE-TNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP 59
           +KA  +++         F+  N+++P  +  ++L+K+ + ++NP+D K+ L   S     
Sbjct: 3   LKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVS----K 58

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLAL 119
            P + G+D  GVVE VG++V  F  GD VY   +      P +NGS AEY  + E L+A 
Sbjct: 59  APRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGS------PDQNGSNAEYQLINERLVAK 112

Query: 120 KPKNLSFVEAASLPLATETAYEGL-------ERSAFSAGKSILVLGGAGGVGTMVIQLAK 172
            PKN+S  +A SLPL   TAYE L            + GK++L++ GAGGVG++  Q+AK
Sbjct: 113 APKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAK 172

Query: 173 HVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL----PEKFDVVFDAVG 223
             +G   +   S    ++  + +GAD+ +++ +  +        E  D VF    
Sbjct: 173 A-YGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFN 226

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score =  264 bits (676), Expect = 7e-88
 Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 19/234 (8%)

Query: 1   MKAWVYKEYGNSQSVLKF-ETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP 59
           MKA  Y +           +  +  P+     +L++V A ++NP+D+K         D  
Sbjct: 23  MKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTP--PDGT 80

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLAL 119
              + GYD AG+V  VG  V  F+ GDEV+   +        R G+ AE+  V+E ++  
Sbjct: 81  DWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGS------IIRPGTNAEFHLVDERIVGR 134

Query: 120 KPKNLSFVEAASLPLATETAYEGL------ERSAFSAGKSILVLGGAGGVGTMVIQLAKH 173
           KPK L + EAA+LPL + TA+E         +    A  +IL++GGAGGVG++ +Q+A+ 
Sbjct: 135 KPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQ 194

Query: 174 VFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL----PEKFDVVFDAVG 223
               + +A  S     + ++SLGA   ID++K    ++          VF    
Sbjct: 195 RTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTH 248

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  258 bits (662), Expect = 5e-86
 Identities = 80/228 (35%), Positives = 118/228 (51%), Gaps = 15/228 (6%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M A V +E      VL+    +  P     QVL+++ A+  NP+D K   G       PL
Sbjct: 8   MIAAVVEEAN-GPFVLR---KLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPL 63

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P I G D+AG V  VG +V  F+VGD V+G             G+ A++ AV+  LLA K
Sbjct: 64  PAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTG----GVGGLQGTHAQFAAVDARLLASK 119

Query: 121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P  L+  +A+ LPL   TA+EGL +R+    G+++L+ GG GGVG + IQ+A    GA +
Sbjct: 120 PAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALA-RGA-R 177

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKE----NIEDLPEKFDVVFDAVG 223
           V AT+  + L+ +R LGA       +           + FD+V+D +G
Sbjct: 178 VFATARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLG 225

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score =  241 bits (616), Expect = 8e-79
 Identities = 65/241 (26%), Positives = 89/241 (36%), Gaps = 30/241 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
             A    ++               P L  DQV ++V A A+NP D               
Sbjct: 12  QTALTVNDHDEVTVW----NAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFA-----TP 62

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
               G D AG V  VGS V   +VGD VYG  NE     P   G+ ++YT     + A  
Sbjct: 63  WAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTP-DQGAFSQYTVTRGRVWAKI 121

Query: 121 PKNLSFVEAASLPLATETAYEGL-------------ERSAFSAGKSILVLGGAGGVGTMV 167
           PK LSF +AA+LP    TA   +             +    S    +LV GG+    T+ 
Sbjct: 122 PKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVT 181

Query: 168 IQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED-----LPEKFDVVFDAV 222
           +Q+ +   G     AT S    DL +S GA+   DY   N+                D +
Sbjct: 182 MQMLRL-SGY-IPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCI 239

Query: 223 G 223
            
Sbjct: 240 T 240

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  207 bits (529), Expect = 6e-66
 Identities = 84/252 (33%), Positives = 122/252 (48%), Gaps = 37/252 (14%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+A V +  G  + VL+    + VP     +V +++ AAALN +D     G  S    PL
Sbjct: 1   MRAVVMRARGGPE-VLEVAD-LPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKL-PL 57

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPK------------------R 102
           P + G D +GVV+ VG  V+ F  GDEV  +         +                  R
Sbjct: 58  PHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHR 117

Query: 103 NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAG 161
           +G+ AEY  + E  LA KPKNLSF EAA++PL   TA++ + ++     G  +LV+    
Sbjct: 118 HGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGS 177

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTA-KLDLLRSLGADLAIDYTKENIEDLPEK------ 214
           GV    IQ+AK  FGA +V AT+ +  KL   ++LGAD  ++YT     D P++      
Sbjct: 178 GVSVAAIQIAKL-FGA-RVIATAGSEDKLRRAKALGADETVNYTH---PDWPKEVRRLTG 232

Query: 215 ---FDVVFDAVG 223
               D V D  G
Sbjct: 233 GKGADKVVDHTG 244

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  200 bits (510), Expect = 5e-63
 Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 26/235 (11%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+A    E+G    VLK  +++ VP  ++ QVLIKV A  +NP++     G +S     L
Sbjct: 30  MRAVRVFEFGGP-EVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR-KPLL 87

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P  PG DVAGV+E VG     FK GD V+      +       G  AEY    ++ +   
Sbjct: 88  PYTPGSDVAGVIEAVGDNASAFKKGDRVFT-----SSTIS---GGYAEYALAADHTVYKL 139

Query: 121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P+ L F + A++ +   TAY  L   +   AG+S+LV G +GGVG    Q+A+  +G  K
Sbjct: 140 PEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARA-YGL-K 197

Query: 180 VAAT-SSTAKLDLLRSLGADLAIDYTKENIEDLPEKF---------DVVFDAVGK 224
           +  T  +     ++   GA    ++ +    +  +K          D++ + +  
Sbjct: 198 ILGTAGTEEGQKIVLQNGAHEVFNHRE---VNYIDKIKKYVGEKGIDIIIEMLAN 249

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  198 bits (505), Expect = 2e-62
 Identities = 57/234 (24%), Positives = 98/234 (41%), Gaps = 25/234 (10%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            K   + ++GN + VL+ E    +  L++++V ++++   +NP D   + GA+ A   PL
Sbjct: 5   GKLIQFHKFGNPKDVLQVEY-KNIEPLKDNEVFVRMLVRPINPSDLIPITGAY-AHRIPL 62

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P IPGY+  G+VE VG+ V +  +G  V        L      G+  EY     + +   
Sbjct: 63  PNIPGYEGVGIVENVGAFVSRELIGKRVL------PLRGE---GTWQEYVKTSADFVVPI 113

Query: 121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P ++    AA + +   TA+    E         +LV      +G +  QL++       
Sbjct: 114 PDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQI-LNFRL 172

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKF---------DVVFDAVGK 224
           +A T +    + L  LGA   ID +      L E           D   D++G 
Sbjct: 173 IAVTRNNKHTEELLRLGAAYVIDTST---APLYETVMELTNGIGADAAIDSIGG 223

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  194 bits (494), Expect = 1e-60
 Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 22/234 (9%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           ++A VY  +G+   V++ +  +E+ ++R   V +K++AA +NP D   + G +      L
Sbjct: 27  VRALVYGHHGDPAKVVELKN-LELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLL-PEL 84

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P + G +    V  VGS V   K GD V               G+        E  L   
Sbjct: 85  PAVGGNEGVAQVVAVGSNVTGLKPGDWVIPA--------NAGLGTWRTEAVFSEEALIQV 136

Query: 121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P ++    AA+L +   TAY  L +      G S++      GVG  VIQ+A    G   
Sbjct: 137 PSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRT 195

Query: 180 VAATSSTAKL----DLLRSLGADLAIDYTKENIEDLPEKF------DVVFDAVG 223
           +        +    D L+SLGA+  I   +    ++   F       +  + VG
Sbjct: 196 INVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVG 249

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  192 bits (490), Expect = 6e-60
 Identities = 70/245 (28%), Positives = 105/245 (42%), Gaps = 28/245 (11%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+ W  +        LK      VP   E  ++++ +A +LN  D   +       D   
Sbjct: 28  MQEWSTETVAPH--DLKLAE-RPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGL-DLAF 83

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPK---------------RNGS 105
           P +P  D++GVVE VG  V +F+ GD V        LD  +                 G 
Sbjct: 84  PFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGV 143

Query: 106 LAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVG 164
           L+EY  + E      PK+L   EA++LP A  TA+  L E+    AG  ++V  G GGV 
Sbjct: 144 LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQ-GTGGVA 202

Query: 165 TMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVV 218
              +Q+AK   GA  +  +SS  KLD   +LGAD  I+  +E+  +           D +
Sbjct: 203 LFGLQIAKA-TGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHI 261

Query: 219 FDAVG 223
            +  G
Sbjct: 262 LEIAG 266

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  193 bits (493), Expect = 2e-59
 Identities = 69/283 (24%), Positives = 109/283 (38%), Gaps = 62/283 (21%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDS-- 58
           M A +     + +  +  +  V VP L   + L+ V+A+++N       +    +T    
Sbjct: 43  MFAGLETRDKDPRKSIHLDD-VPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFL 101

Query: 59  -------------PLP-TIPGYDVAGVVEKVGSQVKKFKVGDEVYG-------------- 90
                         LP  + G D+AGVV + G  V  ++ GDEV                
Sbjct: 102 ERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHN 161

Query: 91  ----DINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL--- 143
               D  ++        G LAE   V+ N L  KP +LS+ EAA+  L   TAY  L   
Sbjct: 162 DTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSR 221

Query: 144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY 203
             +    G ++L+ G +GG+G+   Q A    GA+ +   SS  K ++ R++GA+  ID 
Sbjct: 222 NGAGMKQGDNVLIWGASGGLGSYATQFALA-GGANPICVVSSPQKAEICRAMGAEAIIDR 280

Query: 204 TKENIEDLP-----------------------EKFDVVFDAVG 223
             E                             E  D+VF+  G
Sbjct: 281 NAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPG 323

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  190 bits (484), Expect = 5e-59
 Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 21/230 (9%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+    K +G    V+       +P   E +VL++  A  +N  D  +  G++       
Sbjct: 29  MRFVDLKSFGGP-DVMVIGK-RPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPP-PKDA 85

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
             I G +++G +  VG  V  + VGD+V G  N          G+ AEY  +    +   
Sbjct: 86  SPILGLELSGEIVGVGPGVSGYAVGDKVCGLAN---------GGAYAEYCLLPAGQILPF 136

Query: 121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           PK    V+AA+LP    T +  L + +  + G+S+L+ GG  G+GT  IQLA+  FGA +
Sbjct: 137 PKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARA-FGA-E 194

Query: 180 VAAT-SSTAKLDLLRSLGADLAIDYTKENIEDL-----PEKFDVVFDAVG 223
           V AT  ST K +    LGA   I+Y  E+   +      +  D++ D +G
Sbjct: 195 VYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIG 244

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  188 bits (480), Expect = 1e-58
 Identities = 63/232 (27%), Positives = 99/232 (42%), Gaps = 27/232 (11%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+A V   +G   + L+      +P  ++ ++ I+V A  LN ID     G         
Sbjct: 4   MRAVVLAGFGGL-NKLRLFR-KAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNP-PKT 60

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P +PG++ +G+VE +G  VK +++GD V   +N           + AE        +   
Sbjct: 61  PLVPGFECSGIVEALGDSVKGYEIGDRVMAFVN---------YNAWAEVVCTPVEFVYKI 111

Query: 121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P ++SF EAA+ P+   TAY  L E +    G S+LV    GGVG  V QL         
Sbjct: 112 PDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCST-VPNVT 170

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKF--------DVVFDAVG 223
           V  T+ST K + ++     L  D       D  ++         D+V D + 
Sbjct: 171 VFGTASTFKHEAIKDSVTHL-FDRN----ADYVQEVKRISAEGVDIVLDCLC 217

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  188 bits (478), Expect = 3e-57
 Identities = 70/294 (23%), Positives = 107/294 (36%), Gaps = 72/294 (24%)

Query: 1   MKAWVYKEYGNSQ----------SVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRML 50
             A   +                  L+    V +P L  D+VL+ V+A+++N       +
Sbjct: 25  YLALHLRAEDADMFKGVADKDVRKSLRLGE-VPMPELAPDEVLVAVMASSINYNTVWSAM 83

Query: 51  GAFSATDS----------------PLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYG---- 90
                T                      + G D +GVV + G  V+++K GD V      
Sbjct: 84  FEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAH 143

Query: 91  --------------DINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLAT 136
                            ++A       G LAEY  V  + L  KP +L++ EAA  PL  
Sbjct: 144 VDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCA 203

Query: 137 ETAYEGL---ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR 193
            TAY  L     +    G  +L+ G +GG+G+  IQ  K+  G   VA  SS  K   +R
Sbjct: 204 GTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKN-GGGIPVAVVSSAQKEAAVR 262

Query: 194 SLGADLAIDYTKENIED-----------------------LPEKFDVVFDAVGK 224
           +LG DL I+  +  I D                          + D+VF+  G+
Sbjct: 263 ALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGR 316

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  185 bits (471), Expect = 3e-57
 Identities = 51/245 (20%), Positives = 85/245 (34%), Gaps = 33/245 (13%)

Query: 1   MKAWVYKEYG-----------NSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRM 49
           MKA +    G             +  L+    + VP+    QVLIKV  A++NP D   +
Sbjct: 11  MKALLLVGDGYTKTPSGSALEAMEPYLEQGR-IAVPAPGPSQVLIKVNLASINPSDVAFI 69

Query: 50  LGAFSATDSPLPTIPGYDVAGVVEKVGSQVK-KFKVGDEVYGDINEKALDHPKRNGSLAE 108
            G +           G++  G +   G +   K  VG  V        L +    GS AE
Sbjct: 70  KGQYGQP-RVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRV---AFATGLSNW---GSWAE 122

Query: 109 YTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVI 168
           Y   E          +   + A++ +   TA    +       K+ ++  GA  +  ++I
Sbjct: 123 YAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVKQEGEKAFVMTAGASQLCKLII 182

Query: 169 QLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKF---------DVVF 219
            LAK   G   +       ++ LL+ +GA   ++       D               +  
Sbjct: 183 GLAKE-EGFRPIVTVRRDEQIALLKDIGAAHVLNEKA---PDFEATLREVMKAEQPRIFL 238

Query: 220 DAVGK 224
           DAV  
Sbjct: 239 DAVTG 243

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =  183 bits (466), Expect = 1e-56
 Identities = 66/233 (28%), Positives = 96/233 (41%), Gaps = 28/233 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA   +        L +   VE P    + V++ V AA +   D+    G +       
Sbjct: 22  MKAIQAQSLSGP-EGLVYTD-VETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLK-MEP 78

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P +PG + AGVV     +    K GD V               G  AE  AV  + +   
Sbjct: 79  PFVPGIETAGVVRSAP-EGSGIKPGDRVMAFNF---------IGGYAERVAVAPSNILPT 128

Query: 121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           P  L   EA +L     T Y     R    AG+++LVLG AGG+GT  IQ+AK   GA  
Sbjct: 129 PPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKG-MGAKV 187

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKF---------DVVFDAVG 223
           +A  + TA  + ++S+GAD+ +       E   +           D+V D +G
Sbjct: 188 IAVVNRTAATEFVKSVGADIVLPLE----EGWAKAVREATGGAGVDMVVDPIG 236

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score =  182 bits (464), Expect = 3e-56
 Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 23/232 (9%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M A  + + G  +  L  +  V  PS  E +VL+KV A+ALN  D  +  G +       
Sbjct: 23  MLAVHFDKPGGPE-NLYVKE-VAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP-PPGA 79

Query: 61  PTIPGYDVAGVVEKVGSQVK-KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLAL 119
             I G + +G V ++G   +  +K+GD     +           G  A+Y  V E LL  
Sbjct: 80  SNILGLEASGHVAELGPGCQGHWKIGDTAMALLP---------GGGQAQYVTVPEGLLMP 130

Query: 120 KPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS 178
            P+ L+  +AA++P A  TA++ L       AG  +L+  G  GVGT  IQL +   GA 
Sbjct: 131 IPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRM-AGA- 188

Query: 179 KVAATSSTA-KLDLLRSLGADLAIDYTKENIEDLPEKF------DVVFDAVG 223
               T+ +  KL +   LGA    +Y KE+  +   KF      +++ D +G
Sbjct: 189 IPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIG 240

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  174 bits (443), Expect = 5e-53
 Identities = 48/261 (18%), Positives = 88/261 (33%), Gaps = 48/261 (18%)

Query: 1   MKAWVYKEYGNSQSVLKFETN-VEVPSLREDQVLIKVVAAALNPID---------FKRML 50
            +A +Y ++G  + VL  ++  ++  +L  ++V++K + + +NP D          K   
Sbjct: 4   AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63

Query: 51  GAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYT 110
                T  P     G +    V KVGS V   + GD V               G+   + 
Sbjct: 64  TTGFGTTEP-AAPCGNEGLFEVIKVGSNVSSLEAGDWVIPS--------HVNFGTWRTHA 114

Query: 111 AVEENLL-----------ALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLG 158
              ++               KP  L+  + A++ +   TAY  L      + GK   +  
Sbjct: 115 LGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQN 174

Query: 159 GA-GGVGTMVIQLAKHVFGASKVAATSSTA----KLDLLRSLGADLAIDYTKENIEDLPE 213
           G    VG    Q+ K     + ++           +  L+ LGA   I   + N  +   
Sbjct: 175 GGTSAVGKYASQIGKL-LNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGP 233

Query: 214 KF-----------DVVFDAVG 223
                         +  + VG
Sbjct: 234 TIKEWIKQSGGEAKLALNCVG 254

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  170 bits (432), Expect = 3e-51
 Identities = 63/232 (27%), Positives = 95/232 (40%), Gaps = 22/232 (9%)

Query: 1   MKAWVYKEYG-NSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP 59
           M+  V      N +  +    +  VP   +  +L++     +N  D     G +  +   
Sbjct: 24  MQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPS-VK 82

Query: 60  LPTIPGYDVAGVVEKVG-SQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLA 118
            P   G++  G V  +G S   ++ VG  V               GS AEYT V  ++  
Sbjct: 83  PPFDIGFEGIGEVVALGLSASARYTVGQAVAYM----------APGSFAEYTVVPASIAT 132

Query: 119 LKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA 177
             P      E  +L ++  TAY  L E    S GK +LV   AGG G   +QL+K     
Sbjct: 133 PVPSVKP--EYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKK-AKC 189

Query: 178 SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL-----PEKFDVVFDAVGK 224
             +   SS  K   L+SLG D  I+Y  E +  +     PE  DVV+++VG 
Sbjct: 190 HVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG 241

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  163 bits (414), Expect = 1e-48
 Identities = 69/253 (27%), Positives = 108/253 (42%), Gaps = 34/253 (13%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDS-- 58
           M+A    E G   S+      + VP  +  QVLIKV AA +   D     G F       
Sbjct: 1   MRAVRLVEIGKPLSL----QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVE 56

Query: 59  ----PLPTIPGYDVAGVVEKVGSQVKKFKVGDEV--YGDI-----------NEKALDHPK 101
                LP   G+++AG +E+VG +V  +  GD V                  E   D P+
Sbjct: 57  DLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPR 116

Query: 102 -----RNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILV 156
                 +G+ AEY  V       K + L+ VEAA L  +  T Y  + +++    K++LV
Sbjct: 117 WLGINFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLV 176

Query: 157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENI-EDLPEK- 214
           +G  GG+GTM +Q+AK V GA+ +        ++  +  GAD  I+ + ++   ++    
Sbjct: 177 VGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRIT 236

Query: 215 ----FDVVFDAVG 223
                D V D   
Sbjct: 237 ESKGVDAVIDLNN 249

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score =  161 bits (409), Expect = 2e-48
 Identities = 70/224 (31%), Positives = 99/224 (44%), Gaps = 27/224 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWV K  G    +     ++  P   E +V+++V A  LN  D    LGA+       
Sbjct: 1   MKAWVLKRLGGPLEL----VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTR-LHP 55

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P IPG +V GVV            G      +           G LAE  AV +  L   
Sbjct: 56  PFIPGMEVVGVV-----------EGRRYAALVP---------QGGLAERVAVPKGALLPL 95

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKV 180
           P+ LS  EAA+ P++  TAY  L+R+    G+ +LV   AG +GT  +Q+A+   G   +
Sbjct: 96  PEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARA-MGLRVL 154

Query: 181 AATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK-FDVVFDAVG 223
           AA S   KL L  +LGA+ A  Y +           D+V +  G
Sbjct: 155 AAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG 198

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score =  161 bits (409), Expect = 3e-48
 Identities = 73/232 (31%), Positives = 108/232 (46%), Gaps = 22/232 (9%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            K   +   G    VL++  + E  +     V+++  A  LN ID     G + A    L
Sbjct: 2   AKRIQFSTVGGP-EVLEYV-DFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA--PFL 57

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-YGDINEKALDHPKRNGSLAEYTAVEENLLAL 119
           P+  G + AGVVE VG +V +FKVGD V YG             G+ +E   + E  L  
Sbjct: 58  PSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGP---------LGAYSEVHVLPEANLVK 108

Query: 120 KPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGAS 178
              ++SF +AA+L L   T    L ++     G+ IL    AGGVG++  Q AK + GA 
Sbjct: 109 LADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKAL-GAK 167

Query: 179 KVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGK 224
            +   SS  K    ++LGA   IDY+ E++          +K  VV+D VG+
Sbjct: 168 LIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ 219

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score =  159 bits (404), Expect = 2e-47
 Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 22/232 (9%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
                + ++G    VL+           E+++ ++  A  +N ID     G +      L
Sbjct: 2   ATRIEFHKHGGP-EVLQAVE-FTPADPAENEIQVENKAIGINFIDTYIRSGLYPP--PSL 57

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-YGDINEKALDHPKRNGSLAEYTAVEENLLAL 119
           P+  G + AG+V KVGS VK  K GD V Y              G+ +    +  +  A+
Sbjct: 58  PSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSA---------LGAYSSVHNIIADKAAI 108

Query: 120 KPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGAS 178
            P  +SF +AA+  L   T Y  L ++      +  L    AGGVG +  Q AK + GA 
Sbjct: 109 LPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAK 167

Query: 179 KVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGK 224
            +    +  K       GA   I+Y +E++ +        +K  VV+D+VG+
Sbjct: 168 LIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGR 219

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score =  159 bits (404), Expect = 2e-47
 Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 23/235 (9%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPID-FKRMLGAFSATDSP 59
           + A V  + G       +E  V+V S    QV ++  A  +N +D + R           
Sbjct: 2   VMAAVIHKKGGP-DNFVWE-EVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGE 59

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEV-YGDINEKALDHPKRNGSLAEYTAVEENLLA 118
            P + G++ A VVE+VG  V  F VG+ V                G+ ++        L 
Sbjct: 60  PPIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPP---------LGAYSQERLYPAEKLI 110

Query: 119 LKPKNLSFVEA--ASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVF 175
             PK+L   +   A L L   TA   L ++     G  +L+   AGG+G +++  A+H+ 
Sbjct: 111 KVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHL- 169

Query: 176 GASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGK 224
           GA+ +   S+  K +  R LG    I+Y+ ++  ++       +  DVV+D++GK
Sbjct: 170 GATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGK 224

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score =  157 bits (399), Expect = 1e-46
 Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 29/236 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            K  +  E G    V+K+E    VPS+ E+++LIK     +N I+     G +       
Sbjct: 9   QKVILIDEIGGY-DVIKYED-YPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC---EK 63

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-YGDINEKALDHPKRNGSLAEYTAV-EENLLA 118
           P + G + +G V   G  V  F+VGD+V Y             N + A+Y+ +  +  + 
Sbjct: 64  PYVLGREASGTVVAKGKGVTNFEVGDQVAYIS-----------NSTFAQYSKISSQGPVM 112

Query: 119 LKPKNLSFVE---AASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHV 174
             PK  S  E    A+  L   TA      +     G  +L+   AGGVG ++ QL K  
Sbjct: 113 KLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMK 172

Query: 175 FGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGK 224
            GA  +A  S+  KL + +  GA+  I+ +KE+I          +  D  FD+VGK
Sbjct: 173 -GAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK 227

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  147 bits (374), Expect = 1e-42
 Identities = 67/255 (26%), Positives = 102/255 (40%), Gaps = 48/255 (18%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPI---DFKRMLGAFSATD 57
           MKA   +  GN    +    NV +P    D +L+KV A     I   D   + G F +T 
Sbjct: 24  MKAVRLESVGN----ISVR-NVGIPEPGPDDLLVKVEACG---ICGTDRHLLHGEFPST- 74

Query: 58  SPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDI-------------------NEKALD 98
              P   G++  G+V + GS V+    G  + GD                    N +A+ 
Sbjct: 75  --PPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIG 132

Query: 99  HPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVL 157
              R+G  AEY  V        P  L  V  A   PLA      G++ S   AG ++ +L
Sbjct: 133 IH-RDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLA--CCLHGVDLSGIKAGSTVAIL 189

Query: 158 GGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLGADLAIDYTKENIED------ 210
            G G +G + +QLA+   GA+ V  +     K  L   +GA   +D +  ++ +      
Sbjct: 190 -GGGVIGLLTVQLARL-AGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPV 247

Query: 211 --LPEKFDVVFDAVG 223
             +P   DVV +  G
Sbjct: 248 GLVPGGVDVVIECAG 262

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score =  143 bits (361), Expect = 9e-41
 Identities = 44/243 (18%), Positives = 78/243 (32%), Gaps = 44/243 (18%)

Query: 15  VLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGA---------------------- 52
            L  ++ ++ P    D+VLI++ A+ LNP D   + GA                      
Sbjct: 19  ELSLDS-IDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVP 77

Query: 53  -----FSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLA 107
                  A         G + AGVV + GS      +  +    I              +
Sbjct: 78  EGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG---------GAMYS 128

Query: 108 EYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMV 167
           +Y  +  +   + P+  +  + AS  +   TA   +E        +++    A  +G M+
Sbjct: 129 QYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMRLEGHSALVHTAAASNLGQML 188

Query: 168 IQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDA 221
            Q+     G   V       + DLL++ GA    +                    + FDA
Sbjct: 189 NQICLK-DGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVSTGATIAFDA 247

Query: 222 VGK 224
            G 
Sbjct: 248 TGG 250

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  135 bits (343), Expect = 2e-38
 Identities = 67/253 (26%), Positives = 97/253 (38%), Gaps = 35/253 (13%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA  Y E G+   V     ++  P+    ++L+KV AA L   D   M    +     L
Sbjct: 1   MKAVQYTEIGSEPVV----VDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGL 56

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-----------------------YGDINEKAL 97
           P   G++  G V ++G  V  F VGD V                                
Sbjct: 57  PLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITP 116

Query: 98  DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA--FSAGKSIL 155
                 GS+AEY  V+     +   +L  V AA L  A  T Y  + R       G + +
Sbjct: 117 PGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAV 176

Query: 156 VLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK- 214
           V+G  GG+G + IQ+ + V  A  +A      +L L R +GAD A+       + + E  
Sbjct: 177 VIG-VGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELT 235

Query: 215 ----FDVVFDAVG 223
                  VFD VG
Sbjct: 236 GGQGATAVFDFVG 248

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  134 bits (340), Expect = 8e-38
 Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 31/249 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            KA + K++    S+     +V +P  + ++VLI++  A +   D +   G  +     L
Sbjct: 4   SKAALLKKFSEPLSI----EDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRL 59

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV--YGDI-----------NEKALDHPK-----R 102
           P I G++ AG + +VG  + K K GD V  Y                    +        
Sbjct: 60  PIILGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTT 118

Query: 103 NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGK---SILVLGG 159
           NG  +EY  V+ +   +K  +LS VEAA L  A  T+   + ++     K    ++++ G
Sbjct: 119 NGGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNG 178

Query: 160 AGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSLGADLAIDYTK--ENIEDLPEK-- 214
            GG+    IQ+ K +     +   S S    D    LGAD   +       I  L +   
Sbjct: 179 IGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLG 238

Query: 215 FDVVFDAVG 223
             +  D VG
Sbjct: 239 ASIAIDLVG 247

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  130 bits (330), Expect = 2e-36
 Identities = 52/255 (20%), Positives = 99/255 (38%), Gaps = 49/255 (19%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPI---DFKRMLGAFSAT 56
           MK+ V    G     ++      +P ++ +D+V +K+ ++    +   D  R+    +  
Sbjct: 1   MKSVVNDTDGI----VRVA-ESVIPEIKHQDEVRVKIASSG---LCGSDLPRIFKNGAH- 51

Query: 57  DSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGD-------------------INEKAL 97
               P   G++ +G ++ VGS V     GD V                           +
Sbjct: 52  --YYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFI 109

Query: 98  DHPKRNGSLAEYTAV-EENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSIL 155
               R+G  AEY  V  +N+ AL P ++   + A + P+           +     K+++
Sbjct: 110 GSR-RDGGFAEYIVVKRKNVFAL-PTDMPIEDGAFIEPITV--GLHAFHLAQGCENKNVI 165

Query: 156 VLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLGADLAIDYTKENIEDLPEK 214
           ++G AG +G + IQ A    GA  V A   S+ KL L +S GA    + ++ +   +   
Sbjct: 166 IIG-AGTIGLLAIQCAVA-LGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSV 223

Query: 215 ------FDVVFDAVG 223
                   ++ +  G
Sbjct: 224 LRELRFNQLILETAG 238

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  129 bits (326), Expect = 8e-36
 Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 44/254 (17%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPI---DFKRML-GAFSAT 56
           M A +  + G      +    V+VP     +VLIKV+A +   I   D        ++ +
Sbjct: 5   MVAIMKTKPGYG---AELV-EVDVPKPGPGEVLIKVLATS---ICGTDLHIYEWNEWAQS 57

Query: 57  DSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGD-------------------INEKAL 97
               P I G++VAG V ++G  V+  +VGD V  +                    N K  
Sbjct: 58  RIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIF 117

Query: 98  DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILV 156
                +G  AEY  V    +   PK++    A    PL    A + +  +   +GKS+L+
Sbjct: 118 GVD-TDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGN--AVDTV-LAGPISGKSVLI 173

Query: 157 LGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLGADLAIDYTKENIEDL---- 211
            G AG +G + I +AK   GA  V  +  S  + +L + +GAD  I+  +E++       
Sbjct: 174 TG-AGPLGLLGIAVAKA-SGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDI 231

Query: 212 --PEKFDVVFDAVG 223
                 DV  +  G
Sbjct: 232 TDGNGVDVFLEFSG 245

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  129 bits (326), Expect = 9e-36
 Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 35/253 (13%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLGAF-SATDS 58
           +KA    EY      L+ E  V+ P L     V++++  A +   D   + G +      
Sbjct: 16  LKAARLHEYNKP---LRIED-VDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQP 71

Query: 59  PLPTIPGYDVAGVVEKVGSQVKKFKVGDEV--YGDI-----------NEKALDHPK---- 101
            LP   G++  G +E+V   V+  + GD V  +  +            +   ++ +    
Sbjct: 72  KLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGL 131

Query: 102 -RNGSLAEYTAVEENLLALKPKNLSF---VEAASLPLATETAYEGLERSAFS--AGKSIL 155
             +G  AE+       +   PK++S    VE A L  A  TAY  ++++A +   G  + 
Sbjct: 132 NIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVA 191

Query: 156 VLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK- 214
           +  G GG+G + +QL K +  A+ +A      KL L   LGAD  +D  ++ ++ + E  
Sbjct: 192 I-VGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELT 250

Query: 215 ----FDVVFDAVG 223
                +V  D VG
Sbjct: 251 RGRGVNVAMDFVG 263

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  123 bits (310), Expect = 2e-33
 Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 47/255 (18%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPI---D---FKRMLGAFS 54
           M+A            L    +  VP     ++L++V AA+   I   D   +K    A++
Sbjct: 1   MRALAKLAPEEG---LTLV-DRPVPEPGPGEILVRVEAAS---ICGTDLHIWKW--DAWA 51

Query: 55  ATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGD-------------------INEK 95
                 P + G++ +GVVE VG  V++ +VGD V  +                   +N +
Sbjct: 52  RGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQ 111

Query: 96  ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSI 154
            L    R+G  AEY  V      + PK+L F  AA L P     A   +   +  +GKS+
Sbjct: 112 ILGVD-RDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFG--NAVHTVYAGSGVSGKSV 168

Query: 155 LVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLGADLAIDYTKENIED--- 210
           L+  GAG +G M   + +   GA  +  +  +  +L   R       ++  +E++ +   
Sbjct: 169 LIT-GAGPIGLMAAMVVRA-SGAGPILVSDPNPYRLAFARPYADR-LVNPLEEDLLEVVR 225

Query: 211 --LPEKFDVVFDAVG 223
                  +V+ +  G
Sbjct: 226 RVTGSGVEVLLEFSG 240

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  122 bits (309), Expect = 2e-33
 Identities = 68/241 (28%), Positives = 102/241 (42%), Gaps = 26/241 (10%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V + +G     L  +  V VP     QV +K+ A+ +   D     G +      L
Sbjct: 3   MKAAVVRAFGAP---LTIDE-VPVPQPGPGQVQVKIEASGVCHTDLHAADGDW-PVKPTL 57

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV----YGDI----------NEKALDHPK----- 101
           P IPG++  G V  VGS V + K GD V                   E   +  +     
Sbjct: 58  PFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYS 117

Query: 102 RNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG 161
            NG   EY   + N + L P  + FVE A +  A  T Y+GL+ +    G+ + V+ G G
Sbjct: 118 VNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWV-VISGIG 176

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDA 221
           G+G + +Q A+   G    A     AKL+L R LGA++A++    +     +K       
Sbjct: 177 GLGHVAVQYARA-MGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHG 235

Query: 222 V 222
           V
Sbjct: 236 V 236

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score =  124 bits (314), Expect = 9e-33
 Identities = 56/185 (30%), Positives = 78/185 (42%), Gaps = 20/185 (10%)

Query: 16  LKF-ETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEK 74
           L   +       L + +V I + AA +N  D    LG +     P     G + AGVV +
Sbjct: 224 LALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMY-----PGVASLGSEGAGVVVE 278

Query: 75  VGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPL 134
            G  V     GD V G              +       +  ++   P   SF  AAS+P+
Sbjct: 279 TGPGVTGLAPGDRVMG----------MIPKAFGPLAVADHRMVTRIPAGWSFARAASVPI 328

Query: 135 ATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR 193
              TAY  L   A    G+S+LV   AGGVG   IQLA+H+ GA +V AT+S  K   + 
Sbjct: 329 VFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHL-GA-EVYATASEDKWQAVE 386

Query: 194 SLGAD 198
            L  +
Sbjct: 387 -LSRE 390

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  119 bits (301), Expect = 4e-32
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 27/243 (11%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            K  ++ E       L+++  + VP  + +++LI V  + +   D     G +      L
Sbjct: 6   QKGVIFYESH---GKLEYKD-IPVPKPKANELLINVKYSGVCHTDLHAWHGDW-PLPVKL 60

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV----YGDI----------NEKALDHPK----- 101
           P + G++ AGVV  +G  VK +K+GD                    NE    H       
Sbjct: 61  PLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYT 120

Query: 102 RNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG 161
            +GS  +Y   +    A  P+     + A +  A  T Y+ L+ +   AG  + + G AG
Sbjct: 121 HDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAG 180

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN--IEDLPEKFDVVF 219
           G+G++ +Q AK   G   +       K +L RS+G ++ ID+TKE   +  + +  D   
Sbjct: 181 GLGSLAVQYAK-AMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGA 239

Query: 220 DAV 222
             V
Sbjct: 240 HGV 242

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  118 bits (299), Expect = 7e-32
 Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 26/241 (10%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V +++      LK +  VE P++   +VL+++ A  +   D     G +      L
Sbjct: 1   MKAAVVEQFKEP---LKIKE-VEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPV-KPKL 55

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-----YG---------DINEKALDHPK----- 101
           P IPG++  G+VE+VG  V   KVGD V     Y             E   +H K     
Sbjct: 56  PLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYS 115

Query: 102 RNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAG 161
            +G  AEY     + +   P NLSF EAA +  A  T Y+ L+ +    G+ + + G  G
Sbjct: 116 VDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGI-G 174

Query: 162 GVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDA 221
           G+G + +Q AK   G + VA      KL+L + LGADL ++  KE+     ++      A
Sbjct: 175 GLGHVAVQYAK-AMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHA 233

Query: 222 V 222
            
Sbjct: 234 A 234

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  118 bits (298), Expect = 1e-31
 Identities = 64/262 (24%), Positives = 104/262 (39%), Gaps = 57/262 (21%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAAL----------NPIDFKRML 50
             + V    G+    L+ E N  +P    ++VL+++ +  +            I      
Sbjct: 8   NLSLVVHGPGD----LRLE-NYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRI------ 56

Query: 51  GAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEV---------------YGDINE- 94
           G F       P + G++ +G VEKVGS VK  K GD V                G  N  
Sbjct: 57  GNFIVKK---PMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLS 113

Query: 95  ---KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSA 150
                   P  +G+L  +           P N++F E A + PL+         R   + 
Sbjct: 114 PSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLS--VGIHACRRGGVTL 171

Query: 151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLGADLAIDYTKENIE 209
           G  +LV  GAG +G + + +AK   GA++V  T  S  +L   + +GADL +  +KE+ +
Sbjct: 172 GHKVLVC-GAGPIGMVTLLVAKA-MGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQ 229

Query: 210 D--------LPEKFDVVFDAVG 223
           +        L  K +V  +  G
Sbjct: 230 EIARKVEGQLGCKPEVTIECTG 251

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  115 bits (291), Expect = 9e-31
 Identities = 65/263 (24%), Positives = 102/263 (38%), Gaps = 58/263 (22%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAAL----------NPIDFKRML 50
             + V  +  +    L+ E    +P  +ED+VL+++    +            I      
Sbjct: 5   NLSAVLYKQND----LRLE-QRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRI------ 53

Query: 51  GAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEV---------------YGDINE- 94
             F   D   P + G++ +G V KVG  VK  K GD V                G  N  
Sbjct: 54  ADFIVKD---PMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLC 110

Query: 95  ---KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSA 150
                   P  +G+LA Y     +     P N+S  E A L PL+         R+    
Sbjct: 111 PDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLS--VGVHACRRAGVQL 168

Query: 151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD--LAIDYTKENI 208
           G ++LV+ GAG +G + +  AK  +GA  V    S  +L++ ++ GAD  L +D  KE  
Sbjct: 169 GTTVLVI-GAGPIGLVSVLAAKA-YGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEE 226

Query: 209 EDLPEK--------FDVVFDAVG 223
             + E+         +V  D  G
Sbjct: 227 SSIIERIRSAIGDLPNVTIDCSG 249

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  114 bits (286), Expect = 1e-29
 Identities = 56/304 (18%), Positives = 110/304 (36%), Gaps = 61/304 (20%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSL-REDQVLIKVVAAA-----LNPIDFKRMLGAFS 54
           + + V++        ++ E  V  P + +  +++IKV A       ++            
Sbjct: 32  LGSKVWRYPE-----VRVE-EVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILY 85

Query: 55  ATDSPLPTIPGYDVAGVVEKVGSQV------KKFKVGDEVYGD----------------- 91
              +  P   G++ +GVV + G +       K+F++G+ V  +                 
Sbjct: 86  PGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPN 145

Query: 92  --INEKALDHPKRNGSLAEYTAVEENLL-------ALKPKNLSFVEAASL-PLATETAYE 141
              N   L     +G+ AEY  V+            +   +  F+  + + P +      
Sbjct: 146 HCENLNELGFN-VDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAV 204

Query: 142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLGADLA 200
            +       G ++++LG  G +G   + + KH  GASKV  +  S  + +L + LGAD  
Sbjct: 205 IVRGGGIRPGDNVVILG-GGPIGLAAVAILKH-AGASKVILSEPSEVRRNLAKELGADHV 262

Query: 201 IDYTKENIEDL------PEKFDVVFDAVG-----KMCISIVYQKCDKFQEKSLINFGLFR 249
           ID TKEN  +            +  +A G        I  V  +  +    ++       
Sbjct: 263 IDPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWR-ARGINATVAIVARAD 321

Query: 250 QEVP 253
            ++P
Sbjct: 322 AKIP 325

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  113 bits (284), Expect = 1e-29
 Identities = 52/268 (19%), Positives = 104/268 (38%), Gaps = 54/268 (20%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
             A V +++      L ++   E+  +    +L+++++A +   D     G       PL
Sbjct: 18  AHAMVLEKFNQP---LVYKE-FEISDIPRGSILVEILSAGVCGSDVHMFRGEDP--RVPL 71

Query: 61  PTIPGYDVAGVVEKVGSQVK-----KFKVGDEVYGD------------------------ 91
           P I G++ AG V +V  + +       K GD +  +                        
Sbjct: 72  PIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRK 131

Query: 92  ---INEKALDHPKRNGSLAEYTAV--EENLLALKPKNLSFVEAASLPLATETAYEGLERS 146
              IN    ++P   G  + +  +  E ++L +  +       A    +  TAY   +  
Sbjct: 132 VYGINRGCSEYPHLRGCYSSHIVLDPETDVLKV-SEKDDLDVLAMAMCSGATAYHAFDEY 190

Query: 147 AF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLGADLAIDYT 204
               AGK++++ G AG +G   + +A+ + GA  V     S  +L L   +GADL ++  
Sbjct: 191 PESFAGKTVVIQG-AGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEIGADLTLNRR 248

Query: 205 KENIEDLPEK---------FDVVFDAVG 223
           + ++E+  +           D + +A G
Sbjct: 249 ETSVEERRKAIMDITHGRGADFILEATG 276

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  103 bits (258), Expect = 7e-26
 Identities = 54/248 (21%), Positives = 85/248 (34%), Gaps = 53/248 (21%)

Query: 16  LKFETNVEVPSLREDQVLIKVVAAALNPI---D---FKRMLGAFSATDSPLPTIPGYDVA 69
              E+  +   L+E +V + V +     I   D   +K   G           + G++ A
Sbjct: 27  PSLESVQKGEELKEGEVTVAVRSTG---ICGSDVHFWKH--GCIGPMIVECDHVLGHESA 81

Query: 70  GVVEKVGSQVKKFKVGDEV---------------YGDINEKALDH-------PKRNGSLA 107
           G V  V   VK  KVGD V                G  N             P   G L 
Sbjct: 82  GEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYN---GCERVDFLSTPPVPGLLR 138

Query: 108 EYTAVEENLLALKPKNLSFVEAASL-PLATETAYEGLERSAFSAGKSILVLGGAGGVGTM 166
            Y          K  N+S+   A L PL+   A  GL+R+    G  +L+ G AG +G +
Sbjct: 139 RYVNHPAVWC-HKIGNMSYENGAMLEPLSV--ALAGLQRAGVRLGDPVLICG-AGPIGLI 194

Query: 167 VIQLAKHVFGASKVAAT-SSTAKLDLLRSLGADLAIDYTK-ENIEDLPEK---------F 215
            +  AK   GA  +  T     +L   + +  ++     +  + E+  +K          
Sbjct: 195 TMLCAKA-AGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEP 253

Query: 216 DVVFDAVG 223
            V  +  G
Sbjct: 254 AVALECTG 261

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  102 bits (256), Expect = 1e-25
 Identities = 45/267 (16%), Positives = 83/267 (31%), Gaps = 60/267 (22%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPID------FKRMLGAFS 54
           MKA   K   +             P     + L++ +      +            G F 
Sbjct: 1   MKAIAVKRGEDR---PVVI-EKPRPEPESGEALVRTLRVG---VCGTDHEVIAGGHGGFP 53

Query: 55  ATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYG-----------------------D 91
             +  L  + G++  GVV        + + GD V                         D
Sbjct: 54  EGEDHL--VLGHEAVGVVVDPN--DTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPD 109

Query: 92  INEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL--PLATETAYEGLERSAFS 149
                      +G ++E+    E  L   P++ +  E   L  P++     + LE +  S
Sbjct: 110 GMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA--ELGFLIEPISI--TEKALEHAYAS 165

Query: 150 A------GKSILVLGGAGGVGTMVIQLAKHV-FGASKVAATSST----AKLDLLRSLGAD 198
                    S  VLG  G +G + + + K    G   +            +D++  L A 
Sbjct: 166 RSAFDWDPSSAFVLG-NGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT 224

Query: 199 LAI--DYTKENIEDLPEKFDVVFDAVG 223
                    E++ D+ E+ D +++A G
Sbjct: 225 YVDSRQTPVEDVPDVYEQMDFIYEATG 251

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  100 bits (252), Expect = 4e-25
 Identities = 45/268 (16%), Positives = 84/268 (31%), Gaps = 58/268 (21%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSL-REDQVLIKVVAAALNPID------FKRMLGAF 53
           MKA + K       V     +V+   L    ++ I+ +      I           L   
Sbjct: 1   MKAIIVKPPNAGVQV----KDVDEKKLDSYGKIKIRTIYNG---ICGADREIVNGKLTLS 53

Query: 54  SATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINE------------------- 94
           +        + G++  GVVE+       F  GD V                         
Sbjct: 54  TLPKGKDFLVLGHEAIGVVEES---YHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETG 110

Query: 95  --KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLA------------TETAY 140
                   K +G + E+   +   L   PK++  +   + PLA             +   
Sbjct: 111 EFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVP 170

Query: 141 EGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA 200
                      + +LV+G  G +G +   L +  +G     A       ++ +++  +  
Sbjct: 171 VWTCDDGTLNCRKVLVVG-TGPIGVLFTLLFRT-YGLEVWMANRR-EPTEVEQTVIEETK 227

Query: 201 IDYTK-----ENIEDLPEKFDVVFDAVG 223
            +Y       + ++D   KFDV+ DA G
Sbjct: 228 TNYYNSSNGYDKLKDSVGKFDVIIDATG 255

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score =   99 bits (249), Expect = 4e-24
 Identities = 40/180 (22%), Positives = 58/180 (32%), Gaps = 16/180 (8%)

Query: 25   PSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKV 84
                    L  V   +LN  D     G          +IPG  +            +   
Sbjct: 1555 LPASCQDRLCSVYYTSLNFRDVMLATGKL-----SPDSIPGKWLTRDCMLGMEFSGRDAS 1609

Query: 85   GDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL- 143
            G  V G +             LA    + ++     P   +  EAAS+P+   TAY  L 
Sbjct: 1610 GRRVMGMV---------PAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLV 1660

Query: 144  ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY 203
             R     G+S+L+  G+GGVG   I +A    G        S  K   L++    L    
Sbjct: 1661 VRGRMQPGESVLIHSGSGGVGQAAIAIALS-RGCRVFTTVGSAEKRAYLQARFPQLDETC 1719

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 91.6 bits (228), Expect = 6e-22
 Identities = 59/239 (24%), Positives = 90/239 (37%), Gaps = 35/239 (14%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP- 59
           M+A + ++          +  +E   L    V + V  ++LN   +K  L   + T    
Sbjct: 1   MQALILEQQDGKTLA-SVQH-LEESQLPAGDVTVDVHWSSLN---YKDAL---AITGKGK 52

Query: 60  ----LPTIPGYDVAGVVEKVGSQVKKFKVGDEV----YGDINEKALDHPKRNGSLAEYTA 111
                P IPG D AG V    S+  +F  G EV    +G + E         G LAE   
Sbjct: 53  IIRHFPMIPGIDFAGTVHA--SEDPRFHAGQEVLLTGWG-VGE------NHWGGLAERAR 103

Query: 112 VEENLLALKPKNLSFVEAASLPLATETA----YEGLERSAFSAGKSILVLGGAGGVGTMV 167
           V+ + L   P  LS   A  +  A  TA        +         ++V G +GGVG+  
Sbjct: 104 VKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTA 163

Query: 168 IQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLP---EKFDVVFDAVG 223
           + L     G    A +   +    L+SLGA+  +    E  E  P   + +    D VG
Sbjct: 164 VALLHK-LGYQVAAVSGRESTHGYLKSLGANRILS-RDEFAESRPLEKQLWAGAIDTVG 220

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 88.1 bits (219), Expect = 1e-20
 Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 37/240 (15%)

Query: 2   KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP-- 59
           +A+V  +     +    +T + +  L E  VL++V  +++N   +K  L   ++      
Sbjct: 5   QAFVVNKTETEFTA-GVQT-ISMDDLPEGDVLVRVHYSSVN---YKDGL---ASIPDGKI 56

Query: 60  ---LPTIPGYDVAGVVEKVGSQVKKFKVGDEV----YGDINEKALDHPKRNGSLAEYTAV 112
               P +PG D+AGVV    SQ  +F+ GDEV    Y  I           G  +EY  +
Sbjct: 57  VKTYPFVPGIDLAGVVVS--SQHPRFREGDEVIATGYE-IGVT------HFGGYSEYARL 107

Query: 113 EENLLALKPKNLSFVEAASLPLATETAYEGL----ERSAFSAGKSILVLGGAGGVGTMVI 168
               L   PK L+  EA ++  A  TA   +    E         +LV G  GGVG++ +
Sbjct: 108 HGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAV 167

Query: 169 QLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED-----LPEKFDVVFDAVG 223
            +     G +  A+T   A+ D LR LGA   +   ++ + +       +++    D VG
Sbjct: 168 SMLAK-RGYTVEASTGKAAEHDYLRVLGAKEVLA-REDVMAERIRPLDKQRWAAAVDPVG 225

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 87.0 bits (216), Expect = 3e-20
 Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 37/240 (15%)

Query: 2   KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP-- 59
           +A   ++  +  SV   +T +    L +D VLIKV  + +N   +K  L   +       
Sbjct: 6   QALQAEKNADDVSV-HVKT-ISTEDLPKDGVLIKVAYSGIN---YKDGL---AGKAGGNI 57

Query: 60  ---LPTIPGYDVAGVVEKVGSQVKKFKVGDEV----YGDINEKALDHPKRNGSLAEYTAV 112
               P I G D AG V    S   +F  GDEV    Y  +         R+G L+EY +V
Sbjct: 58  VREYPLILGIDAAGTVVS--SNDPRFAEGDEVIATSYE-LGV------SRDGGLSEYASV 108

Query: 113 EENLLALKPKNLSFVEAASLPLATETAYEGLERSAFS----AGKSILVLGGAGGVGTMVI 168
             + L   P+NLS  EA     A  TA   + R   +       S+LV G  GGVG + +
Sbjct: 109 PGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAV 168

Query: 169 QLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLP-----EKFDVVFDAVG 223
            +     G   VA+T +    D L+ LGA   I   ++  +        +++    D VG
Sbjct: 169 SMLNK-RGYDVVASTGNREAADYLKQLGASEVIS-REDVYDGTLKALSKQQWQGAVDPVG 226

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 80.7 bits (200), Expect = 7e-19
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 115 NLLALKPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKH 173
           +L+   P  L+  EAA+  +A  TA+  L      S G+ +L+    GGVG   + +AK 
Sbjct: 2   DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKM 61

Query: 174 VFGASKVAAT-SSTAKLDLLRSLGAD 198
           + GA ++  T  S AK ++L  LG +
Sbjct: 62  I-GA-RIYTTAGSDAKREMLSRLGVE 85

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 83.4 bits (207), Expect = 7e-19
 Identities = 59/272 (21%), Positives = 98/272 (36%), Gaps = 58/272 (21%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAA-----LNPIDFKRMLGAFSA 55
           MK +     G     + +    E P+      +++ +A A     ++ +           
Sbjct: 1   MKGFAMLSIGK----VGWIE-KEKPAPGPFDAIVRPLAVAPCTSDIHTVF-----EGAIG 50

Query: 56  TDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEV----------------------YGDIN 93
                  I G++  G V +VGS+VK FK GD V                       G + 
Sbjct: 51  ERHN--MILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLA 108

Query: 94  EKALDHPKRNGSLAEYTAV---EENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSA 150
                + K +G   E+  V   + NL  L PK +    A  +P    T + G E +    
Sbjct: 109 GWKFSNVK-DGVFGEFFHVNDADMNLAHL-PKEIPLEAAVMIPDMMTTGFHGAELANIKL 166

Query: 151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK-LDLLRSLGADLAIDYTKEN-I 208
           G ++ V+G  G VG M +  A H  GA ++ A  S     D+    GA   I+Y   + +
Sbjct: 167 GDTVCVIG-IGPVGLMSVAGANH-LGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIV 224

Query: 209 EDLPEK-----FDVVFDAVG-----KMCISIV 230
           E + +       D V  A G        + ++
Sbjct: 225 EQILKATDGKGVDKVVIAGGDVHTFAQAVKMI 256

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score = 81.0 bits (201), Expect = 4e-18
 Identities = 64/242 (26%), Positives = 99/242 (40%), Gaps = 47/242 (19%)

Query: 2   KAWVYKEY--GN-SQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDS 58
           K+W  K++  G  +QS  + +T VE+P L+  +VL++ +  +++P               
Sbjct: 9   KSWTLKKHFQGKPTQSDFELKT-VELPPLKNGEVLLEALFLSVDPYMRIAS--------K 59

Query: 59  PLP---TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEEN 115
            L     + G  VA VVE   S+   F  G  V                    +   +  
Sbjct: 60  RLKEGAVMMGQQVARVVE---SKNSAFPAGSIVLA------------QSGWTTHFISDGK 104

Query: 116 LLALKPKNLSFVEAASLPLATE-------TAYEGLERSA-FSAGKSILVLGGAGGVGTMV 167
              L+     + +   L LA         TAY GL        G+++LV   AG VG++V
Sbjct: 105 --GLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVV 162

Query: 168 IQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN--IEDL----PEKFDVVFDA 221
            Q+AK + G   V A  S  K+  L+ +G D A +Y   N   E L    P+ +D  FD 
Sbjct: 163 GQIAK-LKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDN 221

Query: 222 VG 223
           VG
Sbjct: 222 VG 223

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 79.2 bits (196), Expect = 3e-17
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 33/196 (16%)

Query: 57  DSPLPTIPGYDVAGVVEKVGSQVKKFKVGD---------------------EVY-----G 90
            S  P +PG+++ G V +VGS+VKK  VGD                     E Y      
Sbjct: 67  FSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMIL 126

Query: 91  DINEKALDHPKRNGSLAEYTAVEENLLALK-PKNLSFVEAASLPLATETAYEGLERS-AF 148
                  D     G  + +    E    ++ P N+     A L  A  T Y  L+     
Sbjct: 127 TYASIYHDGTITYGGYSNHMVANERY-IIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLD 185

Query: 149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL-DLLRSLGADLAIDYT-KE 206
             GK I ++G  GG+G + ++ AK  FG+     ++S +K  + L++ GAD  +    +E
Sbjct: 186 EPGKHIGIVGL-GGLGHVAVKFAK-AFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQE 243

Query: 207 NIEDLPEKFDVVFDAV 222
            ++      D + D V
Sbjct: 244 QMQAAAGTLDGIIDTV 259

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 78.4 bits (194), Expect = 4e-17
 Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 38/196 (19%)

Query: 57  DSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEV---------------------------- 88
           +   P IPG+++AG++++VG  VKKFK+GD V                            
Sbjct: 55  EGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVF 114

Query: 89  -YGDINEKALDHPKRNGSLAEYTAVEENLLALK-PKNLSFVEAASLPLATETAYEGLERS 146
            Y  + +   D+    G  +    V+EN   +   KN    + A L  A  T Y  L+ S
Sbjct: 115 TYDCL-DSFHDNEPHMGGYSNNIVVDENY-VISVDKNAPLEKVAPLLCAGITTYSPLKFS 172

Query: 147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKE 206
             + G  + V G  GG+G+M ++ A    GA       +  K     S+G        K+
Sbjct: 173 KVTKGTKVGVAG-FGGLGSMAVKYAV-AMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQ 230

Query: 207 NIEDLPEKFDVVFDAV 222
                 E+ D +   +
Sbjct: 231 ----CKEELDFIISTI 242

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 33/196 (16%)

Query: 57  DSPLPTIPGYDVAGVVEKVGSQVKKFKVGD---------------------EVY-----G 90
            S  P +PG++V G V +VGS V KF VGD                     E Y      
Sbjct: 60  MSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIW 119

Query: 91  DINEKALDHPKRNGSLAEYTAVEENLLALK-PKNLSFVEAASLPLATETAYEGLERSAF- 148
             N+  ++     G  A+ T V +    +K P+ ++  +AA L  A  T Y  L      
Sbjct: 120 SYNDVYINGQPTQGGFAKATVVHQKF-VVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLK 178

Query: 149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL-DLLRSLGADLAIDYT-KE 206
             G    +LG  GGVG M +++AK   G      +SS  K  + L+ LGAD  +  + + 
Sbjct: 179 QPGLRGGILGL-GGVGHMGVKIAK-AMGHHVTVISSSNKKREEALQDLGADDYVIGSDQA 236

Query: 207 NIEDLPEKFDVVFDAV 222
            + +L +  D V D V
Sbjct: 237 KMSELADSLDYVIDTV 252

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 37/227 (16%)

Query: 27  LREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGD 86
              + V I++    +   D  ++   ++   +  P +PG+++ G V  VG QV+K+  GD
Sbjct: 45  PGPNDVKIEIAYCGVCHSDLHQVRSEWA--GTVYPCVPGHEIVGRVVAVGDQVEKYAPGD 102

Query: 87  ---------------------EVY-----GDINEKALDHPKRN-GSLAEYTAVEENLLAL 119
                                E Y     G  N    D P    G  ++   V E    L
Sbjct: 103 LVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERY-VL 161

Query: 120 K-PKNLSFVEAASLPL--ATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFG 176
           +       + A + PL  A  T Y  L       GK + V+G  GG+G M I+LA    G
Sbjct: 162 RIRHPQEQLAAVA-PLLCAGITTYSPLRHWQAGPGKKVGVVG-IGGLGHMGIKLAH-AMG 218

Query: 177 ASKVAATSSTAKLDLLRSLGADLAIDYT-KENIEDLPEKFDVVFDAV 222
           A  VA T+S AK +  ++LGAD  ++    + +    + FD + + V
Sbjct: 219 AHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV 265

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score = 72.2 bits (178), Expect = 7e-15
 Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 51/251 (20%)

Query: 2   KAWVYKEY--GN-SQSVLKFETNVEVPS---LREDQVLIKVVAAALNPIDFKRMLGAFSA 55
           K  + K+Y  G  ++S   F T   V        + VL+K +  + +P    RM     +
Sbjct: 6   KQVILKDYVSGFPTESDFDFTT-TTVELRVPEGTNSVLVKNLYLSCDPYMRIRMGKPDPS 64

Query: 56  TDSPLP------TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEY 109
           T +          I GY V+ ++E   S    +K GD ++G              +  EY
Sbjct: 65  TAALAQAYTPGQPIQGYGVSRIIE---SGHPDYKKGDLLWG------------IVAWEEY 109

Query: 110 TAVEENLLALKPKNLSFVEAASLPLAT---------ETAYEGLERSA-FSAGKSILVLGG 159
           + +     A        ++   +PL+           TAY G         G+++ V   
Sbjct: 110 SVITPMTHAHFK-----IQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAA 164

Query: 160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADLAIDYTKEN--IEDL----P 212
           +G VG +V QLAK + G   V +  S  K+DLL++  G D A +Y +E+     L    P
Sbjct: 165 SGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFP 223

Query: 213 EKFDVVFDAVG 223
              D+ F+ VG
Sbjct: 224 NGIDIYFENVG 234

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 69.5 bits (171), Expect = 7e-14
 Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 33/196 (16%)

Query: 57  DSPLPTIPGYDVAGVVEKVGSQV-KKFKVGD---------------------EVY----- 89
           +  +P + G+++ G V K+G +     KVG                      E Y     
Sbjct: 59  NMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFV 118

Query: 90  GDINEKALDHPKRNGSLAEYTAVEENLLALK-PKNLSFVEAASLPLATETAYEGLERSAF 148
              ++   D     G  A Y  V E+   +  P+N+    AA L     T Y  L R+  
Sbjct: 119 TTYSQPYEDGYVSQGGYANYVRVHEHF-VVPIPENIPSHLAAPLLCGGLTVYSPLVRNGC 177

Query: 149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD--LAIDYTKE 206
             GK + ++G  GG+G+M   ++K   GA     + S+ K +    +GAD  +A     +
Sbjct: 178 GPGKKVGIVG-LGGIGSMGTLISK-AMGAETYVISRSSRKREDAMKMGADHYIATLEEGD 235

Query: 207 NIEDLPEKFDVVFDAV 222
             E   + FD++    
Sbjct: 236 WGEKYFDTFDLIVVCA 251

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 69.1 bits (170), Expect = 8e-14
 Identities = 53/271 (19%), Positives = 95/271 (35%), Gaps = 58/271 (21%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           + A V    G   +  + +  +++   + D+VL+KVVA  +   D       +     PL
Sbjct: 7   IIAAVTPCKG---ADFELQA-LKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV---PL 59

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-----------------------YGDINEKAL 97
           P + G++ +G++E +G  V + +VGD V                       +   N    
Sbjct: 60  PAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGA 119

Query: 98  --DHPKR---------------NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY 140
             +                     S A Y    EN      K++       L    +T  
Sbjct: 120 DSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGA 179

Query: 141 EG--LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK-VAATSSTAKLDLLRSLGA 197
            G  +     +   S +   GAG VG   +  AK   GAS  +A     ++L+L + LGA
Sbjct: 180 -GACINALKVTPASSFVTW-GAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGA 236

Query: 198 DLAIDYTKENI-EDLPEK----FDVVFDAVG 223
              I+   ++    + E      +   ++ G
Sbjct: 237 THVINSKTQDPVAAIKEITDGGVNFALESTG 267

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 53/251 (21%), Positives = 85/251 (33%), Gaps = 50/251 (19%)

Query: 2   KAWVYKEYGNSQSVLKFET----NVEVPS-LREDQVLIKVVAAALNPIDFKRMLGAFSAT 56
           +  V             E      V +P  + E QV ++ +  +++P    RM       
Sbjct: 10  QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTD 69

Query: 57  DSPLP-----TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTA 111
               P      + G  +  + E   S+      GD V                       
Sbjct: 70  YIT-PWQLSQVVDGGGIGIIEE---SKHTNLTKGDFVTS-----------FYWPWQTKVI 114

Query: 112 VEENLLALKPKNLSFVEAASLPLATE---------TAYEGLERSA-FSAGKS--ILVLGG 159
           ++ N L      L         L+           T+  G++     +AG +  ++V G 
Sbjct: 115 LDGNSLEKVDPQL-----VDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGA 169

Query: 160 AGGVGTMVIQLAKHVFGASKV-AATSSTAKLDLLRS-LGADLAIDYTKENIED-----LP 212
           AG  G++  Q+     G S+V     +  K  LL S LG D AI+Y K+N+ +      P
Sbjct: 170 AGACGSVAGQIGH-FLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCP 228

Query: 213 EKFDVVFDAVG 223
              DV FD VG
Sbjct: 229 AGVDVYFDNVG 239

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 60/284 (21%), Positives = 90/284 (31%), Gaps = 84/284 (29%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLRED------QVLIKVVAAA-----LNPIDFKRM 49
            K+ VY    +    L+ ET V  P L  +       V++KVV+        +       
Sbjct: 3   NKSVVYHGTRD----LRVET-VPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYR---- 53

Query: 50  LGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEV-----------------YGDI 92
                    P   + G+++ G V + GS V+   +GD V                   D+
Sbjct: 54  ----GRFIVPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDV 109

Query: 93  NEKALDHPKRNGSL------------AEYTAV---EENLLALKPKNLSFVEAAS------ 131
            E  L +P  +               AEY  V   +  LL         +E         
Sbjct: 110 CENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKF-GDKEQAMEKIKDLTLIS 168

Query: 132 --LPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK- 188
             LP    T + G   +    G  + +  GAG VG      A+   GA+ V       + 
Sbjct: 169 DILP----TGFHGCVSAGVKPGSHVYIA-GAGPVGRCAAAGARL-LGAACVIVGDQNPER 222

Query: 189 LDLLRSLGADLAIDYTKENIEDLPEKF---------DVVFDAVG 223
           L LL   G +  ID        L ++          D   DAVG
Sbjct: 223 LKLLSDAGFE-TIDLRNS--APLRDQIDQILGKPEVDCGVDAVG 263

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 54/285 (18%), Positives = 93/285 (32%), Gaps = 86/285 (30%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLRE-------DQVLIKVVAAA-----LNPIDFKR 48
            +  VY   G     ++ +  ++ P +++         V++KVV+        + +    
Sbjct: 3   NRGVVYLGSGK----VEVQK-IDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVR--- 54

Query: 49  MLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEV-------------------- 88
                  T + +  + G+++ G V + G  V+  ++GD V                    
Sbjct: 55  -----GRTTAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTG 109

Query: 89  -------------YGDINEKALDHPKRNGSLAEYTAV---EENLLALKPKNLS--FVEAA 130
                        YG ++          G  AEY  V   + NLL L P           
Sbjct: 110 VCLTVNPARAGGAYGYVDMGDWT-----GGQAEYVLVPYADFNLLKL-PDRDKAMEKIRD 163

Query: 131 SLPLA--TETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK 188
              L+    T Y G   +    G ++ V  GAG VG      A+   GA+ V        
Sbjct: 164 LTCLSDILPTGYHGAVTAGVGPGSTVYVA-GAGPVGLAAAASARL-LGAAVVIVGDLNPA 221

Query: 189 -LDLLRSLGADLAIDYTKENIEDLPEKF---------DVVFDAVG 223
            L   ++ G +   D + +    L E+          D   DAVG
Sbjct: 222 RLAHAKAQGFE-IADLSLD--TPLHEQIAALLGEPEVDCAVDAVG 263

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 58/259 (22%), Positives = 88/259 (33%), Gaps = 61/259 (23%)

Query: 16  LKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKV 75
           L  ET + V   +  +V IK++A+ +   D   +     +     P I G++  GVVE +
Sbjct: 22  LSLET-ITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS---KFPVILGHEAVGVVESI 77

Query: 76  GSQVKKFKVGDEV---------------------------------YGD------INEKA 96
           G+ V   K GD+V                                   D         K 
Sbjct: 78  GAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKP 137

Query: 97  LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGK---- 152
           + +     +  EYT V +  +A         E+  +     T Y G   +A +  K    
Sbjct: 138 IYNLMGTSTFTEYTVVADIAVAKIDPKAPL-ESCLIGCGFATGY-G---AAVNTAKVTPG 192

Query: 153 SILVLGGAGGVGTMVIQLAKHVFGASK-VAATSSTAKLDLLRSLGADLAI---DYTKENI 208
           S   + G GGVG   I   K   GAS+ +   +   K      LGA   +   DY K   
Sbjct: 193 STCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIY 251

Query: 209 EDLPEK----FDVVFDAVG 223
           E + EK     D   +  G
Sbjct: 252 EVICEKTNGGVDYAVECAG 270

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 61/278 (21%), Positives = 95/278 (34%), Gaps = 67/278 (24%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            KA +  + G+    L  E  +EV   +  +V I+V+A  + P D         A     
Sbjct: 9   CKAAIAWKTGSP---LCIEE-IEVSPPKACEVRIQVIATCVCPTDINATDPKKKA---LF 61

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-------------------------------- 88
           P + G++ AG+VE VG  V  FK GD+V                                
Sbjct: 62  PVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPT 121

Query: 89  -----YGD------INEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATE 137
                  D         +++ H     S ++YT V E  LA      +      +     
Sbjct: 122 IDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFS 181

Query: 138 TAYEGLERSAFSAGK----SILVLGGAGGVGTMVIQLAKHVFGASK-VAATSSTAKLDLL 192
           + Y G   +A +  K    S   + G G VG   I   K   GAS+ +A   +  K    
Sbjct: 182 SGY-G---AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKA 236

Query: 193 RSLGADLAI---DYTKENIEDLPEK----FDVVFDAVG 223
           ++LGA   +   +  K   + + E      D   D  G
Sbjct: 237 KALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 274

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 61/253 (24%), Positives = 90/253 (35%), Gaps = 59/253 (23%)

Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK 81
           VEV   +  +V IK+VA  +   D   + G       PLP I G++ AG+VE +G  V  
Sbjct: 26  VEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT---PLPVIAGHEAAGIVESIGEGVTT 82

Query: 82  FKVGDEV---------------------------------YGD------INEKALDHPKR 102
            + GD+V                                   D         K + H   
Sbjct: 83  VRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLG 142

Query: 103 NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGK----SILVLG 158
             + ++YT V+E  +A         +   +     T Y G   SA    K    S   + 
Sbjct: 143 TSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGY-G---SAVKVAKVTQGSTCAVF 198

Query: 159 GAGGVGTMVIQLAKHVFGASK-VAATSSTAKLDLLRSLGADLAI---DYTKENIEDLPEK 214
           G GGVG  VI   K   GA++ +    +  K    + +GA   +   DY K   E L E 
Sbjct: 199 GLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEM 257

Query: 215 ----FDVVFDAVG 223
                D  F+ +G
Sbjct: 258 SNGGVDFSFEVIG 270

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 65/259 (25%), Positives = 93/259 (35%), Gaps = 59/259 (22%)

Query: 16  LKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKV 75
           L  E  +EV   +  +V IK++A A+   D   + GA    +   P I G+  AG+VE V
Sbjct: 19  LSIEE-IEVAPPKAHEVRIKIIATAVCHTDAYTLSGADP--EGCFPVILGHLGAGIVESV 75

Query: 76  GSQVKKFKVGDEV---------------------------------YGD------INEKA 96
           G  V K K GD V                                   D         K 
Sbjct: 76  GEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKT 135

Query: 97  LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGK---- 152
           + H     + +EYT V +  +A         +   L     T Y G   +A +  K    
Sbjct: 136 ILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY-G---AAVNTAKLEPG 191

Query: 153 SILVLGGAGGVGTMVIQLAKHVFGASK-VAATSSTAKLDLLRSLGADLAI---DYTKENI 208
           S+  + G GGVG  VI   K   GAS+ +    +  K    +  GA   I   D++K   
Sbjct: 192 SVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQ 250

Query: 209 EDLPEK----FDVVFDAVG 223
           E L E      D  F+ +G
Sbjct: 251 EVLIEMTDGGVDYSFECIG 269

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 43/253 (16%), Positives = 84/253 (33%), Gaps = 58/253 (22%)

Query: 22  VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK 81
           +EV     +++ IK++A  +   D   +           P + G++ AG+VE VG  V +
Sbjct: 26  IEVDVPHANEIRIKIIATGVCHTDLYHLFEGKH--KDGFPVVLGHEGAGIVESVGPGVTE 83

Query: 82  FKVGDEV---------------------------------YGD------INEKALDHPKR 102
           F+ G++V                                             + +     
Sbjct: 84  FQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLG 143

Query: 103 NGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGK----SILVLG 158
             + ++YT V +  +A    +        L     T + G   +A +  K    S   + 
Sbjct: 144 TSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGF-G---AAVNTAKVEPGSTCAVF 199

Query: 159 GAGGVGTMVIQLAKHVFGASK-VAATSSTAKLDLLRSLGADLAI---DYTKENIEDLPEK 214
           G G VG   +       GA + +A   +  K +  +  GA   +   D+++   + L + 
Sbjct: 200 GLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKM 258

Query: 215 ----FDVVFDAVG 223
                D   + VG
Sbjct: 259 TNGGVDFSLECVG 271

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 153 SILVLGGAGGVGTMVI-QLAKHVFGASKVAATSSTAKLDLLRSLGADLAI-DYTKENIED 210
           SI V G  G +G +VI  L K V  +  +A   +  K   L   G ++   DY +     
Sbjct: 2   SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQ----- 56

Query: 211 LPEKFDVVFDAVGKM 225
            PE     F  V K+
Sbjct: 57  -PESLQKAFAGVSKL 70

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 154 ILVLGGAGGVGTMVI-QLAKHVFGASKVAATSSTAKLDLLRSLGADLAI-DYTKENIEDL 211
           I + G  G +G  VI  L K V  +  VA   + AK   L + G  +   DY        
Sbjct: 2   IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGD------ 55

Query: 212 PEKFDVVFDAVGKM 225
                     V K+
Sbjct: 56  EAALTSALQGVEKL 69

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 37/276 (13%), Positives = 89/276 (32%), Gaps = 53/276 (19%)

Query: 2   KAWVYKEYGNSQSVL-KFETNV---EVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATD 57
           K WV  +   S  V  K +  +    + +    + +++++   L  ID      +  +++
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 58  SPLPTIPGYDVAGVVEKVGSQVKKFK----VGDEVYGDINE-KALDHP-K-----RNGSL 106
             L     + +   + ++    K ++    V   V  +     A +   K     R   +
Sbjct: 223 IKLRI---HSIQAELRRLLKS-KPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQV 277

Query: 107 AEY-TAVEENLLALKPKNLSFVEAASLPL---ATETAYEGLERSAFSAGKSI--LVLGGA 160
            ++ +A     ++L   +++        L     +   + L R       +     L   
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV----LTTNPRRLSI- 332

Query: 161 GGVGTMVIQLA------KHVFGASKVAAT--SSTAKLD--LLRSLGADLAIDYTKENIED 210
             +   +          KHV    K+     SS   L+    R +   L++     +   
Sbjct: 333 --IAESIRDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSA-H 386

Query: 211 LPEKFDVVF--DAVGKMCISIVYQKCDKFQEKSLIN 244
           +P     +   D +    + +V    +K  + SL+ 
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVV----NKLHKYSLVE 418

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 38/252 (15%), Positives = 76/252 (30%), Gaps = 64/252 (25%)

Query: 4   WVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTI 63
           W          V KF                  V   L   ++K ++             
Sbjct: 69  WTLLSKQEEM-VQKF------------------VEEVLRI-NYKFLMSPIKTE----QRQ 104

Query: 64  PGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAE-YTAVEENLLALKPK 122
           P       +E+           D +Y D N+      K N S  + Y  + + LL L+P 
Sbjct: 105 PSMMTRMYIEQR----------DRLYND-NQV---FAKYNVSRLQPYLKLRQALLELRPA 150

Query: 123 NLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA 182
               ++             G+      +GK+ + L           ++   +F  +    
Sbjct: 151 KNVLID-------------GV----LGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNC 192

Query: 183 TSSTAKLDLLRSLGADLAIDYTK--ENIEDLPEKFDVVFDAVGKMCISIVYQKC----DK 236
            S    L++L+ L   +  ++T   ++  ++  +   +   + ++  S  Y+ C      
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 237 FQEKSLIN-FGL 247
            Q     N F L
Sbjct: 253 VQNAKAWNAFNL 264

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-- 200
              + +  G  +L  G   G+G   + LAK+   A   +   S   L+  R         
Sbjct: 30  HHDTVYPPGAKVLEAGC--GIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK 87

Query: 201 -IDYTKENIEDLP---EKFDVVF 219
            + + + NI  LP     FD +F
Sbjct: 88  NVKFLQANIFSLPFEDSSFDHIF 110

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 150 AGKSILVLG-GAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLLRSLGADLAIDYTKEN 207
            G  I+ LG G G          +H  GAS V     S   L   R+ G D  I Y + +
Sbjct: 43  GGLRIVDLGCGFGWFC---RWAHEH--GASYVLGLDLSEKMLARARAAGPDTGITYERAD 97

Query: 208 IEDLP---EKFDVVF 219
           ++ L    + FD+ +
Sbjct: 98  LDKLHLPQDSFDLAY 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.96
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.8
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.05
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.82
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.79
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.67
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.63
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.55
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.55
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.45
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.43
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.25
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.22
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.21
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.19
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.14
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.09
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.04
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.03
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.0
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.91
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.88
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.86
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.83
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.72
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.69
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.63
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.62
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.6
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.6
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.57
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.55
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.54
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.54
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.51
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.5
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.49
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.48
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.48
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.48
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.47
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.46
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.46
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.44
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.44
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.44
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.43
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.43
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.42
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.42
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.42
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.41
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.4
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.39
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.36
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.35
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.35
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.35
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.35
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.35
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.35
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.34
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.33
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.33
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.33
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.33
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.32
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.32
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.32
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.32
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.31
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.31
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.31
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.31
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.31
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.3
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.3
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.3
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.3
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.29
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.29
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.29
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.29
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.29
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.29
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.29
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.28
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.28
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.28
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.28
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.28
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.28
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.28
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.28
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.28
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.27
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.26
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.26
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.25
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.25
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.25
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.24
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.24
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.24
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.23
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.23
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.23
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.22
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.22
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.22
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.22
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.22
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.22
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.22
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.22
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.21
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.21
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.21
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.2
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.2
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.19
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.19
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.19
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.19
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.19
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.19
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.18
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.18
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.18
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.17
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.17
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.17
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.16
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.15
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.15
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.15
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.15
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.14
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.14
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.13
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.13
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.13
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.13
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.13
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.12
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.11
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.11
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.11
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.1
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.1
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.09
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.09
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.09
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.08
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.08
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.07
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.07
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.07
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.06
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.06
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.06
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.06
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.06
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.06
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.06
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.05
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.05
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.05
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.04
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.04
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.03
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.03
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.02
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.02
1spx_A	278	Short-chain reductase family member (5L265); paral	97.02
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.01
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.01
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.01
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.01
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.01
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.0
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.0
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.0
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.0
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.0
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.0
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.0
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.99
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.99
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.99
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.99
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.98
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.98
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.98
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.96
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.96
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.96
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.96
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.95
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.95
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.95
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.94
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.94
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.94
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.94
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.94
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.94
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.94
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.93
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.93
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.92
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.92
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.91
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.91
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.91
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.91
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.91
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.91
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.91
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.91
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.91
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.9
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.9
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.9
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.89
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.89
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.89
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.89
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.88
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.88
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.88
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.87
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	96.87
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.86
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.86
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.85
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.85
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.84
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.84
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.84
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.83
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.83
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.83
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.83
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.82
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.82
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.82
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.82
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.8
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.79
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.79
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.78
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.78
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.77
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.76
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.76
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.76
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.76
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.75
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.74
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.73
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.73
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.72
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.71
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.7
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.69
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.69
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.69
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.69
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.68
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.67
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.67
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.66
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	96.66
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.66
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.65
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.64
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.64
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.62
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	96.61
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.61
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.58
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.58
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.58
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.58
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.57
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.56
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.56
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.56
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.55
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.55
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.54
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.53
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.53
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.52
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.52
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.51
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.51
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.48
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.48
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.48
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.47
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.47
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	96.47
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.47
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.46
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.45
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.44
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.44
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.44
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.42
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.41
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.41
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.4
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.39
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.39
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.38
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.37
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.36
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.34
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.33
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.32
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.32
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.32
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.31
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.3
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.3
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.29
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.28
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.27
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.26
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.25
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.25
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.22
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.22
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.22
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	96.22
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.2
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	96.2
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	96.19
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.17
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.16
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.15
4f6c_A	427	AUSA reductase domain protein; thioester reductase	96.13
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.12
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.11
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.11
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.11
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.11
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.09
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.07
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.07
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.07
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	96.07
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	96.06
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.05
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.04
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.03
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.01
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.01
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.01
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.99
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	95.99
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.98
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.97
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	95.95
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.95
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.95
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	95.95
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.95
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.95
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.95
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	95.92
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.88
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.88
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.87
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	95.85
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.85
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	95.85
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.85
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.85
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.84
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.82
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.81
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.81
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	95.8
1xxl_A	239	YCGJ protein; structural genomics, protein structu	95.8
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	95.79
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	95.79
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	95.79
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.78
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.77
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.75
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.72
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	95.72
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.72
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	95.71
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	95.71
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.68
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.68
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	95.67
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	95.65
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	95.64
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.63
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	95.63
4e4y_A	244	Short chain dehydrogenase family protein; structur	95.62
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	95.6
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.59
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.57
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.54
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.51
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.5
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.5
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.49
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	95.49
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.47
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.45
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	95.45
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	95.44
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	95.4
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.39
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.38
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	95.36
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.36
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	95.35
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.35
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.34
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	95.32
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	95.32
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.28
4f6l_B	508	AUSA reductase domain protein; thioester reductase	95.26

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=1.7e-47  Score=326.92  Aligned_cols=238  Identities=31%  Similarity=0.381  Sum_probs=214.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.+ +.++++ +.|.|+|++|||+|||.+++||++|+++++|.++.  .++|.++|||++|+|+++|++++
T Consensus         2 MkA~~~~~~g~~-~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~v~G~e~~G~V~~vG~~v~   77 (325)
T 3jyn_A            2 AKRIQFSTVGGP-EVLEYV-DFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA--PFLPSGLGAEGAGVVEAVGDEVT   77 (325)
T ss_dssp             EEEEEBSSCSSG-GGCEEE-EECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--SSSSBCCCCCEEEEEEEECTTCC
T ss_pred             cEEEEEecCCCc-ceeEEe-ecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCCCCCceeEEEEEEECCCCC
Confidence            999999999988 778999 89999999999999999999999999999998753  46799999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                      +|++||||+...        ...|+|+||+++|.+.++++|+++++++++.+++..+|+|+++. ..++++|++|+|+||
T Consensus        78 ~~~~GdrV~~~~--------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga  149 (325)
T 3jyn_A           78 RFKVGDRVAYGT--------GPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAA  149 (325)
T ss_dssp             SCCTTCEEEESS--------SSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             CCCCCCEEEEec--------CCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            999999999754        24799999999999999999999999999999999999999995 578999999999999


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++++|+|+.. |++|++++++++|+++++++|+++++|+.+.++.+.      .+++|++|||+|+ .....++.
T Consensus       150 ~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-~~~~~~~~  227 (325)
T 3jyn_A          150 AGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ-DTWLTSLD  227 (325)
T ss_dssp             TSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG-GGHHHHHT
T ss_pred             CcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh-HHHHHHHH
Confidence            999999999999996 999999999999999999999999999987665432      2479999999998 44556677


Q ss_pred             ccccCCceEEEEeeccCCCC
Q 025278          234 CDKFQEKSLINFGLFRQEVP  253 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~~~~~  253 (255)
                      +++ ++|+++.+|..+++.+
T Consensus       228 ~l~-~~G~iv~~g~~~~~~~  246 (325)
T 3jyn_A          228 SVA-PRGLVVSFGNASGPVS  246 (325)
T ss_dssp             TEE-EEEEEEECCCTTCCCC
T ss_pred             Hhc-CCCEEEEEecCCCCCC
Confidence            777 7899999999876543

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=1.7e-47  Score=326.51  Aligned_cols=238  Identities=35%  Similarity=0.568  Sum_probs=211.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCC--CCC-CCCCCCcccccceEEEEEEeCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGA--FSA-TDSPLPTIPGYDVAGVVEKVGS   77 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~--~~~-~~~~~p~~~G~e~~G~V~~~G~   77 (255)
                      |||+++++++.+ +.++++ +.|.|+|++|||+||+.+++||++|++.++|.  ++. ...++|.++|||++|+|+++|+
T Consensus         7 Mka~~~~~~g~~-~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~   84 (321)
T 3tqh_A            7 MKAIQFDQFGPP-KVLKLV-DTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGS   84 (321)
T ss_dssp             EEEEEESSSCSG-GGEEEE-EEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECT
T ss_pred             ceEEEEccCCCc-ceeEEE-ecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCC
Confidence            899999999987 778999 89999999999999999999999999999883  110 1346799999999999999999


Q ss_pred             CCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEE
Q 025278           78 QVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVL  157 (255)
Q Consensus        78 ~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~  157 (255)
                      ++++|++||||++....     ....|+|+||++++.+.++++|+++++++++.++++++|||++++..++++|++|+|+
T Consensus        85 ~v~~~~~GdrV~~~~~~-----~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~  159 (321)
T 3tqh_A           85 DVNNVNIGDKVMGIAGF-----PDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIH  159 (321)
T ss_dssp             TCCSCCTTCEEEEECST-----TTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             CCCCCCCCCEEEEccCC-----CCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEE
Confidence            99999999999987521     1246999999999999999999999999999999999999999988999999999999


Q ss_pred             cCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc-ccccCCCccEEEECCCCccceeeeeeccc
Q 025278          158 GGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IEDLPEKFDVVFDAVGKMCISIVYQKCDK  236 (255)
Q Consensus       158 ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~d~vid~~G~~~~~~~~~~~~~  236 (255)
                      ||+|++|++++|+|+.+ |++|++++ +++++++++++|+++++|+.+.+ +.+..+++|+||||+|+... ..++++++
T Consensus       160 Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~~~~-~~~~~~l~  236 (321)
T 3tqh_A          160 AGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGDVG-IQSIDCLK  236 (321)
T ss_dssp             STTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCHHHH-HHHGGGEE
T ss_pred             cCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCcHHH-HHHHHhcc
Confidence            99999999999999996 99998887 56678999999999999998877 77767899999999998776 66778887


Q ss_pred             cCCceEEEEeecc
Q 025278          237 FQEKSLINFGLFR  249 (255)
Q Consensus       237 ~~~G~~v~~G~~~  249 (255)
                       ++|+++.+|...
T Consensus       237 -~~G~iv~~g~~~  248 (321)
T 3tqh_A          237 -ETGCIVSVPTIT  248 (321)
T ss_dssp             -EEEEEEECCSTT
T ss_pred             -CCCEEEEeCCCC
Confidence             789999998654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2.6e-47  Score=327.73  Aligned_cols=242  Identities=28%  Similarity=0.374  Sum_probs=213.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.+   ++++ +.|.|+|++|||+|||.+++||++|++.++|.++. ..++|.++|||++|+|+++|++++
T Consensus         3 MkA~~~~~~g~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~P~v~G~E~~G~V~~vG~~v~   77 (340)
T 3s2e_A            3 MKAAVVRAFGAP---LTID-EVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPV-KPTLPFIPGHEGVGYVSAVGSGVS   77 (340)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCSEEEEEEEEECSSCC
T ss_pred             eEEEEEecCCCC---CEEE-EccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCC-CCCCCcccCCcceEEEEEECCCCC
Confidence            999999998865   6888 89999999999999999999999999999998753 246899999999999999999999


Q ss_pred             CCCCCCEEEecc-----C--------------ccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDI-----N--------------EKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~-----~--------------~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      +|++||||....     .              .....+...+|+|+||+++|.+.++++|+++++++++.+++++.|||+
T Consensus        78 ~~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  157 (340)
T 3s2e_A           78 RVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYK  157 (340)
T ss_dssp             SCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHH
Confidence            999999995321     1              111133446799999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc----CCCccE
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL----PEKFDV  217 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~----~~~~d~  217 (255)
                      +++..++++|++|||+| +|++|++++|+|+++ |++|++++++++|+++++++|+++++|+.+.++.+.    .+++|+
T Consensus       158 ~l~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~  235 (340)
T 3s2e_A          158 GLKVTDTRPGQWVVISG-IGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHG  235 (340)
T ss_dssp             HHHTTTCCTTSEEEEEC-CSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             HHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCE
Confidence            99989999999999999 699999999999996 899999999999999999999999999987665432    248999


Q ss_pred             EEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          218 VFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       218 vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +||++|+......+.++++ ++|+++.+|...+
T Consensus       236 vid~~g~~~~~~~~~~~l~-~~G~iv~~G~~~~  267 (340)
T 3s2e_A          236 VLVTAVSPKAFSQAIGMVR-RGGTIALNGLPPG  267 (340)
T ss_dssp             EEESSCCHHHHHHHHHHEE-EEEEEEECSCCSS
T ss_pred             EEEeCCCHHHHHHHHHHhc-cCCEEEEeCCCCC
Confidence            9999998887788888888 7899999998764

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=5.8e-47  Score=326.20  Aligned_cols=242  Identities=29%  Similarity=0.325  Sum_probs=212.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++   ++++ +.|.|+|++|||+|||.+++||++|++.++|.++....++|.++|||++|+|+++|++++
T Consensus         1 MkA~~~~~~g~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~   76 (345)
T 3jv7_A            1 MKAVQYTEIGSE---PVVV-DIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVT   76 (345)
T ss_dssp             CEEEEECSTTSC---CEEE-ECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCC
T ss_pred             CeEEEEcCCCCc---eEEE-EecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCC
Confidence            999999999975   6888 899999999999999999999999999999986544567899999999999999999999


Q ss_pred             CCCCCCEEEeccCccc-------------c----------CCCCCCcceeeEEeee-CCceEeCCCCCCHHhhhccchhH
Q 025278           81 KFKVGDEVYGDINEKA-------------L----------DHPKRNGSLAEYTAVE-ENLLALKPKNLSFVEAASLPLAT  136 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~-------------~----------~~~~~~g~~~~~~~~~-~~~~~~lp~~~~~~~aa~l~~~~  136 (255)
                      +|++||||+..+...+             +          .+...+|+|+||+++| .+.++++|+ +++++++.+++++
T Consensus        77 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~  155 (345)
T 3jv7_A           77 GFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAG  155 (345)
T ss_dssp             SCCTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTT
T ss_pred             CCCCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhH
Confidence            9999999998643211             0          2334579999999999 999999999 9999999999999


Q ss_pred             HHHHHHHHhc--ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc---
Q 025278          137 ETAYEGLERS--AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL---  211 (255)
Q Consensus       137 ~ta~~~l~~~--~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~---  211 (255)
                      +|||+++++.  .+++|++|+|+| +|++|++++|+|+++++.+|++++++++|+++++++|+++++++++ ++.+.   
T Consensus       156 ~ta~~~l~~~~~~~~~g~~vlv~G-aG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~-~~~~~v~~  233 (345)
T 3jv7_A          156 LTPYHAISRVLPLLGPGSTAVVIG-VGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGA-GAADAIRE  233 (345)
T ss_dssp             HHHHHHHHTTGGGCCTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECST-THHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCC-cHHHHHHH
Confidence            9999999764  899999999999 5999999999999976889999999999999999999999999876 33221   


Q ss_pred             ---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 ---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 ---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                         .+++|+|||++|+......++++++ ++|+++.+|...+
T Consensus       234 ~t~g~g~d~v~d~~G~~~~~~~~~~~l~-~~G~iv~~G~~~~  274 (345)
T 3jv7_A          234 LTGGQGATAVFDFVGAQSTIDTAQQVVA-VDGHISVVGIHAG  274 (345)
T ss_dssp             HHGGGCEEEEEESSCCHHHHHHHHHHEE-EEEEEEECSCCTT
T ss_pred             HhCCCCCeEEEECCCCHHHHHHHHHHHh-cCCEEEEECCCCC
Confidence               2389999999999877778888888 7899999998765

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=1.3e-46  Score=325.99  Aligned_cols=242  Identities=29%  Similarity=0.425  Sum_probs=210.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++ + +.++++ +.|.|+|++|||+|||.+++||++|+++++|.++. ..++|.++|||++|+|+++|++++
T Consensus        28 mkA~~~~~~~-~-~~l~~~-e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~P~v~GhE~~G~V~~vG~~v~  103 (363)
T 3uog_A           28 MQEWSTETVA-P-HDLKLA-ERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGL-DLAFPFVPASDMSGVVEAVGKSVT  103 (363)
T ss_dssp             EEEEEBSCTT-T-TCCEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTC-CCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             hEEEEEccCC-C-CCcEEE-eeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCCcCcccceEEEEEEECCCCC
Confidence            8999999874 2 457999 89999999999999999999999999999987652 357899999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc---------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-H
Q 025278           81 KFKVGDEVYGDINEKAL---------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-E  144 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~---------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~  144 (255)
                      +|++||||++.+...+.               .+...+|+|+||+++|.+.++++|+++++++||.++++++|||+++ +
T Consensus       104 ~~~vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~  183 (363)
T 3uog_A          104 RFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVE  183 (363)
T ss_dssp             SCCTTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHHTT
T ss_pred             CCCCCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHHHHHHHHH
Confidence            99999999987421111               2334579999999999999999999999999999999999999999 6


Q ss_pred             hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEE
Q 025278          145 RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVV  218 (255)
Q Consensus       145 ~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~v  218 (255)
                      ..++++|++|||+| +|++|++++|+|+.+ |++|++++++++|+++++++|+++++|...+++.+.      .+++|+|
T Consensus       184 ~~~~~~g~~VlV~G-~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~v  261 (363)
T 3uog_A          184 KGHLRAGDRVVVQG-TGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHI  261 (363)
T ss_dssp             TTCCCTTCEEEEES-SBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred             hcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEE
Confidence            79999999999999 999999999999995 999999999999999999999999999554444332      2489999


Q ss_pred             EECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          219 FDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       219 id~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |||+|. .....++++++ ++|+++.+|...+
T Consensus       262 id~~g~-~~~~~~~~~l~-~~G~iv~~G~~~~  291 (363)
T 3uog_A          262 LEIAGG-AGLGQSLKAVA-PDGRISVIGVLEG  291 (363)
T ss_dssp             EEETTS-SCHHHHHHHEE-EEEEEEEECCCSS
T ss_pred             EECCCh-HHHHHHHHHhh-cCCEEEEEecCCC
Confidence            999994 44566677777 7899999998775

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=1.3e-46  Score=324.95  Aligned_cols=236  Identities=27%  Similarity=0.431  Sum_probs=212.6

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.+ +.++++ +.|.|+|+++||+|||.+++||++|++.++|.++. ...+|.++|||++|+|+++|++++
T Consensus        29 MkA~~~~~~g~~-~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~i~G~E~~G~V~~vG~~v~  105 (353)
T 4dup_A           29 MRFVDLKSFGGP-DVMVIG-KRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPP-PKDASPILGLELSGEIVGVGPGVS  105 (353)
T ss_dssp             EEEEEESSSSSG-GGEEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCC-CTTSCSSSCCEEEEEEEEECTTCC
T ss_pred             eeEEEEccCCCc-cceEEE-eccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCccccccEEEEEEECCCCC
Confidence            899999999887 778999 89999999999999999999999999999998753 345789999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga  159 (255)
                      +|++||||++..         ..|+|+||+++|.+.++++|+++++++++.++++++|||+++ +..++++|++|||+||
T Consensus       106 ~~~vGdrV~~~~---------~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg  176 (353)
T 4dup_A          106 GYAVGDKVCGLA---------NGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGG  176 (353)
T ss_dssp             SCCTTCEEEEEC---------SSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESST
T ss_pred             CCCCCCEEEEec---------CCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            999999999865         369999999999999999999999999999999999999999 6789999999999988


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc-----CCCccEEEECCCCccceeeeeec
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL-----PEKFDVVFDAVGKMCISIVYQKC  234 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~  234 (255)
                      +|++|++++|+|+.. |++|++++++++|++.++++|++.++|+.+.++.+.     .+++|++|||+|+.. ...++.+
T Consensus       177 ~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~  254 (353)
T 4dup_A          177 TSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAAY-FERNIAS  254 (353)
T ss_dssp             TSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGGG-HHHHHHT
T ss_pred             CCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHHH-HHHHHHH
Confidence            999999999999995 999999999999999999999999999987665432     358999999999863 4555677


Q ss_pred             cccCCceEEEEeeccCC
Q 025278          235 DKFQEKSLINFGLFRQE  251 (255)
Q Consensus       235 ~~~~~G~~v~~G~~~~~  251 (255)
                      ++ ++|+++.+|..++.
T Consensus       255 l~-~~G~iv~~g~~~~~  270 (353)
T 4dup_A          255 LA-KDGCLSIIAFLGGA  270 (353)
T ss_dssp             EE-EEEEEEECCCTTCS
T ss_pred             hc-cCCEEEEEEecCCC
Confidence            77 78999999987653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.2e-46  Score=323.88  Aligned_cols=234  Identities=29%  Similarity=0.382  Sum_probs=204.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.+ ..++++ +.|.|+|++|||+|||.+++||++|++.++|.++ ...++|.++|||++|+|+++|++++
T Consensus        22 MkA~~~~~~g~~-~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~~~p~v~G~E~~G~V~~vG~~v~   98 (342)
T 4eye_A           22 MKAIQAQSLSGP-EGLVYT-DVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQ-LKMEPPFVPGIETAGVVRSAPEGSG   98 (342)
T ss_dssp             EEEEEECSSSGG-GGEEEE-EEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSS-SCCCSSBCCCSEEEEEEEECCTTSS
T ss_pred             eEEEEEecCCCC-ceeEEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC-CCCCCCCccceeEEEEEEEECCCCC
Confidence            899999998887 678999 8999999999999999999999999999999874 2347799999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga  159 (255)
                       |++||||++..         ..|+|+||++++.+.++++|+++++++++.++++++|||+++ +..++++|++|||+|+
T Consensus        99 -~~vGDrV~~~~---------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga  168 (342)
T 4eye_A           99 -IKPGDRVMAFN---------FIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGA  168 (342)
T ss_dssp             -CCTTCEEEEEC---------SSCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             -CCCCCEEEEec---------CCCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence             99999999864         369999999999999999999999999999999999999999 6789999999999998


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++++|+|+.+ |++|++++++++|+++++++|++.++++. .++.+.      .+++|++|||+|+. ....++.
T Consensus       169 sg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~g~~-~~~~~~~  245 (342)
T 4eye_A          169 AGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVDMVVDPIGGP-AFDDAVR  245 (342)
T ss_dssp             TSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEEEEEESCC---CHHHHHH
T ss_pred             CCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCceEEEECCchh-HHHHHHH
Confidence            899999999999996 99999999999999999999999999987 544332      23799999999986 3455677


Q ss_pred             ccccCCceEEEEeeccCC
Q 025278          234 CDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~~~  251 (255)
                      +++ ++|+++.+|...+.
T Consensus       246 ~l~-~~G~iv~~G~~~~~  262 (342)
T 4eye_A          246 TLA-SEGRLLVVGFAAGG  262 (342)
T ss_dssp             TEE-EEEEEEEC------
T ss_pred             hhc-CCCEEEEEEccCCC
Confidence            777 78999999987654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.4e-46  Score=322.51  Aligned_cols=235  Identities=30%  Similarity=0.398  Sum_probs=211.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++ +.++++ +.|.|+|++|||+|||.+++||++|++++.|.++   .++|.++|||++|+|+++|++++
T Consensus         9 mka~~~~~~g~~-~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~---~~~P~i~G~e~~G~V~~vG~~v~   83 (334)
T 3qwb_A            9 QKVILIDEIGGY-DVIKYE-DYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP---CEKPYVLGREASGTVVAKGKGVT   83 (334)
T ss_dssp             EEEEEESSSSSG-GGEEEE-EEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC---CCSSEECCSEEEEEEEEECTTCC
T ss_pred             eEEEEEecCCCC-ceeEEE-eccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC---CCCCCccccceEEEEEEECCCCC
Confidence            899999999987 778998 8999999999999999999999999999999864   45799999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeee-CCceEeCCCCCCHHh---hhccchhHHHHHHHHH-hcccCCCCEEE
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVE-ENLLALKPKNLSFVE---AASLPLATETAYEGLE-RSAFSAGKSIL  155 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~lp~~~~~~~---aa~l~~~~~ta~~~l~-~~~~~~g~~Vl  155 (255)
                      +|++||||+...          +|+|+||++++ .+.++++|+++++++   ++.+++..+|||+++. ..++++|++||
T Consensus        84 ~~~~GdrV~~~~----------~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vl  153 (334)
T 3qwb_A           84 NFEVGDQVAYIS----------NSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVL  153 (334)
T ss_dssp             SCCTTCEEEEEC----------SSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEE
T ss_pred             CCCCCCEEEEee----------CCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEE
Confidence            999999999864          69999999999 999999999999999   8888899999999995 56899999999


Q ss_pred             EEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCcccee
Q 025278          156 VLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       156 I~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~  229 (255)
                      |+||+|++|++++|+|+.. |++|++++++++|+++++++|+++++|+.+.++.+.      .+++|++|||+|. ....
T Consensus       154 V~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-~~~~  231 (334)
T 3qwb_A          154 LFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK-DTFE  231 (334)
T ss_dssp             ESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGG-GGHH
T ss_pred             EECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCCh-HHHH
Confidence            9999999999999999995 999999999999999999999999999987665432      3479999999997 4456


Q ss_pred             eeeeccccCCceEEEEeeccCCCC
Q 025278          230 VYQKCDKFQEKSLINFGLFRQEVP  253 (255)
Q Consensus       230 ~~~~~~~~~~G~~v~~G~~~~~~~  253 (255)
                      .++.+++ ++|+++.+|...+..+
T Consensus       232 ~~~~~l~-~~G~iv~~G~~~~~~~  254 (334)
T 3qwb_A          232 ISLAALK-RKGVFVSFGNASGLIP  254 (334)
T ss_dssp             HHHHHEE-EEEEEEECCCTTCCCC
T ss_pred             HHHHHhc-cCCEEEEEcCCCCCCC
Confidence            6677777 7899999998876543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=7.4e-47  Score=326.40  Aligned_cols=239  Identities=26%  Similarity=0.316  Sum_probs=209.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHH-HHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFK-RMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~-~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||++++++++.    +++ +.|.|+|+++||+|||.+++||++|++ ++.|.++   .++|.++|||++|+|+++|+++
T Consensus         1 MkA~~~~~~~~~----~~~-e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~---~~~p~v~G~E~~G~V~~vG~~v   72 (352)
T 3fpc_A            1 MKGFAMLSIGKV----GWI-EKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG---ERHNMILGHEAVGEVVEVGSEV   72 (352)
T ss_dssp             CEEEEEEETTEE----EEE-ECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC---CCSSEECCCEEEEEEEEECTTC
T ss_pred             CeEEEEccCCCc----eEE-eCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC---CCCCcccCCcceEEEEEECCCC
Confidence            999999999875    888 899999999999999999999999999 6688764   4679999999999999999999


Q ss_pred             CCCCCCCEEEeccCccc---------------------cCCCCCCcceeeEEeeeCC--ceEeCCCCCCHHhhhccchhH
Q 025278           80 KKFKVGDEVYGDINEKA---------------------LDHPKRNGSLAEYTAVEEN--LLALKPKNLSFVEAASLPLAT  136 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~---------------------~~~~~~~g~~~~~~~~~~~--~~~~lp~~~~~~~aa~l~~~~  136 (255)
                      ++|++||||+..+...+                     ..+...+|+|+||+++|..  .++++|+++++++++.++.++
T Consensus        73 ~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~  152 (352)
T 3fpc_A           73 KDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMM  152 (352)
T ss_dssp             CSCCTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHH
T ss_pred             CcCCCCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchh
Confidence            99999999997432110                     1122357999999999976  899999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCcccccc----
Q 025278          137 ETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL----  211 (255)
Q Consensus       137 ~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~----  211 (255)
                      .|||+++++.++++|++|||+| +|++|++++|+|+++ |+ +|++++++++|+++++++|+++++|+++.++.+.    
T Consensus       153 ~ta~~al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~  230 (352)
T 3fpc_A          153 TTGFHGAELANIKLGDTVCVIG-IGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKA  230 (352)
T ss_dssp             HHHHHHHHHTTCCTTCCEEEEC-CSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHH
Confidence            9999999999999999999999 799999999999996 87 8999999999999999999999999877665432    


Q ss_pred             --CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 --PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 --~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                        .+++|+|||++|++.....++++++ ++|+++.+|...+
T Consensus       231 t~g~g~D~v~d~~g~~~~~~~~~~~l~-~~G~~v~~G~~~~  270 (352)
T 3fpc_A          231 TDGKGVDKVVIAGGDVHTFAQAVKMIK-PGSDIGNVNYLGE  270 (352)
T ss_dssp             TTTCCEEEEEECSSCTTHHHHHHHHEE-EEEEEEECCCCCS
T ss_pred             cCCCCCCEEEECCCChHHHHHHHHHHh-cCCEEEEecccCC
Confidence              2379999999999877788888888 7899999998764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=7.4e-47  Score=324.94  Aligned_cols=236  Identities=23%  Similarity=0.393  Sum_probs=211.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++.+.++++ +.|.|+|++|||+|||.+++||++|++.++|.++. ..++|.++|||++|+|+++|++++
T Consensus         5 mka~~~~~~g~p~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~i~G~E~~G~V~~vG~~v~   82 (340)
T 3gms_A            5 GKLIQFHKFGNPKDVLQVE-YKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAH-RIPLPNIPGYEGVGIVENVGAFVS   82 (340)
T ss_dssp             EEEEEESSCSCHHHHEEEE-EEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTT-TSCSSBCCCSCCEEEEEEECTTSC
T ss_pred             cEEEEEecCCCchheEEEE-ecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCC-CCCCCCcCCcceEEEEEEeCCCCC
Confidence            7999999999864568999 89999999999999999999999999999998653 357899999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga  159 (255)
                      ++++||||+...         .+|+|+||+++|.+.++++|+++++++|+.+++..+|||+++ +..++++|++|+|+|+
T Consensus        83 ~~~vGdrV~~~~---------~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga  153 (340)
T 3gms_A           83 RELIGKRVLPLR---------GEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNAC  153 (340)
T ss_dssp             GGGTTCEEEECS---------SSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             CCCCCCEEEecC---------CCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCC
Confidence            999999999753         379999999999999999999999999999999999999998 6789999999999998


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++++|+|+.+ |++|++++++++|++.++++|+++++|+.+.++.+.      .+++|++|||+|+...... ..
T Consensus       154 ~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~-~~  231 (340)
T 3gms_A          154 GSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNEL-AF  231 (340)
T ss_dssp             TSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCHHHHHHH-HH
T ss_pred             ccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCChhHHHH-HH
Confidence            889999999999996 899999999999999999999999999887665432      2489999999997765443 36


Q ss_pred             ccccCCceEEEEeeccC
Q 025278          234 CDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~~  250 (255)
                      +++ ++|+++.+|..++
T Consensus       232 ~l~-~~G~iv~~G~~~~  247 (340)
T 3gms_A          232 SLR-PNGHFLTIGLLSG  247 (340)
T ss_dssp             TEE-EEEEEEECCCTTS
T ss_pred             Hhc-CCCEEEEEeecCC
Confidence            676 7899999998765

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=2.8e-46  Score=322.33  Aligned_cols=239  Identities=23%  Similarity=0.289  Sum_probs=207.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++.++++.   ++++ +.|.|+|+++||+|||.+++||++|++.++|.++  ..++|.++|||++|+|+++|++++
T Consensus         5 mka~~~~~~~~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~p~i~G~E~~G~V~~vG~~v~   78 (348)
T 3two_A            5 SKGFAIFSKDEH---FKPH-DFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWK--EGIYPMIPGHEIAGIIKEVGKGVK   78 (348)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSS--CCCSSBCCCCCEEEEEEEECTTCC
T ss_pred             EEEEEEccCCCC---CeEE-EeeCCCCCCCeEEEEEEEeeecccchhhhcCCCC--CCCCCeecCcceeEEEEEECCCCC
Confidence            899999988765   6888 8999999999999999999999999999999875  346799999999999999999999


Q ss_pred             CCCCCCEEEeccCc-----c----------c---cC----------CCCCCcceeeEEeeeCCceEeCCCCCCHHhhhcc
Q 025278           81 KFKVGDEVYGDINE-----K----------A---LD----------HPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL  132 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~-----~----------~---~~----------~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l  132 (255)
                      +|++||||+..+..     +          +   ..          +....|+|+||+++|.+.++++|+++++++|+.+
T Consensus        79 ~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l  158 (348)
T 3two_A           79 KFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPL  158 (348)
T ss_dssp             SCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHHGGG
T ss_pred             CCCCCCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHhhhh
Confidence            99999999763210     0          0   00          1112399999999999999999999999999999


Q ss_pred             chhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccC
Q 025278          133 PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLP  212 (255)
Q Consensus       133 ~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  212 (255)
                      ++++.|||+++++.++++|++|||+| +|++|++++|+|+.+ |++|++++++++|+++++++|+++++ .+.+.   ..
T Consensus       159 ~~~~~ta~~~l~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~---~~  232 (348)
T 3two_A          159 LCAGITTYSPLKFSKVTKGTKVGVAG-FGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY-TDPKQ---CK  232 (348)
T ss_dssp             GTHHHHHHHHHHHTTCCTTCEEEEES-CSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE-SSGGG---CC
T ss_pred             hhhHHHHHHHHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec-CCHHH---Hh
Confidence            99999999999888999999999999 599999999999996 89999999999999999999999998 33322   23


Q ss_pred             CCccEEEECCCCccceeeeeeccccCCceEEEEeecc-CCC
Q 025278          213 EKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR-QEV  252 (255)
Q Consensus       213 ~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~-~~~  252 (255)
                      +++|+|||++|+......++++++ ++|+++.+|... ++.
T Consensus       233 ~~~D~vid~~g~~~~~~~~~~~l~-~~G~iv~~G~~~~~~~  272 (348)
T 3two_A          233 EELDFIISTIPTHYDLKDYLKLLT-YNGDLALVGLPPVEVA  272 (348)
T ss_dssp             SCEEEEEECCCSCCCHHHHHTTEE-EEEEEEECCCCCGGGC
T ss_pred             cCCCEEEECCCcHHHHHHHHHHHh-cCCEEEEECCCCCCCc
Confidence            389999999999877777888888 799999999877 443

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=3.2e-46  Score=321.89  Aligned_cols=242  Identities=24%  Similarity=0.309  Sum_probs=212.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++...++  ..++++ |.|.|+|+||||+|||.++|||++|+++++|.++   .++|.++|||++|+|+++|++++
T Consensus         1 MKA~v~~~~~~--~~~~l~-e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~---~~~p~i~GhE~aG~V~~vG~~V~   74 (348)
T 4eez_A            1 MKAAVVRHNPD--GYADLV-EKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFG---NKAGTVLGHEGIGIVKEIGADVS   74 (348)
T ss_dssp             CEEEEECSSCC--SSEEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTC---CCTTCBCCSEEEEEEEEECTTCC
T ss_pred             CeEEEEEcCCC--CcEEEE-EeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCC---CCCCcccceeEEEEEEEECceee
Confidence            99999975443  346888 8999999999999999999999999999999874   46799999999999999999999


Q ss_pred             CCCCCCEEEeccCcc-------------------ccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDINEK-------------------ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~-------------------~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      +|++||||+..+...                   ...+...+|+|+||++++.+.++++|++++++++++++++++|+|+
T Consensus        75 ~~~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  154 (348)
T 4eez_A           75 SLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYK  154 (348)
T ss_dssp             SCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             ecccCCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEe
Confidence            999999997643211                   1133456799999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKF  215 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~  215 (255)
                      +++..++++|++|+|+| +|++|.+++|+|+.+++++|++++++++|+++++++|+++++|+.+.++.+.      ..++
T Consensus       155 ~l~~~~~~~g~~VlV~G-aG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~  233 (348)
T 4eez_A          155 AIKVSGVKPGDWQVIFG-AGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGV  233 (348)
T ss_dssp             HHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCE
T ss_pred             eecccCCCCCCEEEEEc-CCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCc
Confidence            99999999999999999 7999999999999877999999999999999999999999999988775442      3479


Q ss_pred             cEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          216 DVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       216 d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |.++|++|+..+...++.+++ ++|+++.+|....
T Consensus       234 d~~~~~~~~~~~~~~~~~~l~-~~G~~v~~g~~~~  267 (348)
T 4eez_A          234 QSAIVCAVARIAFEQAVASLK-PMGKMVAVAVPNT  267 (348)
T ss_dssp             EEEEECCSCHHHHHHHHHTEE-EEEEEEECCCCSC
T ss_pred             eEEEEeccCcchhheeheeec-CCceEEEEeccCC
Confidence            999999999988888888888 7899999998665

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=1.6e-46  Score=319.71  Aligned_cols=228  Identities=25%  Similarity=0.408  Sum_probs=197.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++  .+ +.++++ +.|.|+|+++||+||+.+++||++|++.++|.++  ..++|.++|||++|+|+++|++++
T Consensus         5 Mka~~~~~--~~-~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~p~i~G~e~~G~V~~vG~~v~   78 (315)
T 3goh_A            5 HQVWAYQT--KT-HSVTLN-SVDIPALAADDILVQNQAIGINPVDWKFIKANPI--NWSNGHVPGVDGAGVIVKVGAKVD   78 (315)
T ss_dssp             EEEEEEET--TT-TEEEEE-EEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTT--CCCTTCCCCSEEEEEEEEECTTSC
T ss_pred             eEEEEEeC--CC-CeeEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCC--cCCCCCEeeeeeEEEEEEeCCCCC
Confidence            89999995  22 346898 8999999999999999999999999999998764  347899999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGA  160 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~  160 (255)
                      +|++||||+....      ...+|+|+||+++|.+.++++|++++++++|.++++++|||++++..++++|++|||+|+ 
T Consensus        79 ~~~vGdrV~~~~~------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~Ga-  151 (315)
T 3goh_A           79 SKMLGRRVAYHTS------LKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGF-  151 (315)
T ss_dssp             GGGTTCEEEEECC------TTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECC-
T ss_pred             CCCCCCEEEEeCC------CCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECC-
Confidence            9999999998652      234799999999999999999999999999999999999999998899999999999997 


Q ss_pred             chHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccceeeeeeccccCCc
Q 025278          161 GGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEK  240 (255)
Q Consensus       161 g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G  240 (255)
                      |++|++++|+|+.+ |++|++++ +++|+++++++|++++++  +  ..+..+++|+||||+|+... ..+.++++ ++|
T Consensus       152 G~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~lGa~~v~~--d--~~~v~~g~Dvv~d~~g~~~~-~~~~~~l~-~~G  223 (315)
T 3goh_A          152 GAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKRGVRHLYR--E--PSQVTQKYFAIFDAVNSQNA-AALVPSLK-ANG  223 (315)
T ss_dssp             SHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHHTEEEEES--S--GGGCCSCEEEEECC--------TTGGGEE-EEE
T ss_pred             CHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHcCCCEEEc--C--HHHhCCCccEEEECCCchhH-HHHHHHhc-CCC
Confidence            99999999999996 88999999 999999999999999995  2  33446789999999998765 56677777 789


Q ss_pred             eEEEEeecc
Q 025278          241 SLINFGLFR  249 (255)
Q Consensus       241 ~~v~~G~~~  249 (255)
                      +++.+|...
T Consensus       224 ~~v~~g~~~  232 (315)
T 3goh_A          224 HIICIQDRI  232 (315)
T ss_dssp             EEEEECCC-
T ss_pred             EEEEEeCCC
Confidence            999998654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=4.5e-46  Score=324.36  Aligned_cols=241  Identities=22%  Similarity=0.304  Sum_probs=209.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++   ++++ +.|.|+|+++||+|||.+++||++|+++++|.++  ..++|.++|||++|+|+++|++++
T Consensus         9 mkA~v~~~~~~~---l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~P~v~GhE~~G~V~~vG~~v~   82 (378)
T 3uko_A            9 CKAAVAYEPNKP---LVIE-DVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDP--EGLFPCILGHEAAGIVESVGEGVT   82 (378)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCT--TCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             eEEEEEecCCCc---cEEE-EecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCC--CCCCCccCCccceEEEEEeCCCCC
Confidence            899999999875   6888 8999999999999999999999999999999864  356899999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc---------------------CC-------------------CCCCcceeeEEeeeCCceEeC
Q 025278           81 KFKVGDEVYGDINEKAL---------------------DH-------------------PKRNGSLAEYTAVEENLLALK  120 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~---------------------~~-------------------~~~~g~~~~~~~~~~~~~~~l  120 (255)
                      +|++||||+..+...+.                     .+                   ....|+|+||+++|.+.++++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  162 (378)
T 3uko_A           83 EVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKI  162 (378)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEEC
Confidence            99999999876431110                     00                   112369999999999999999


Q ss_pred             CCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCC
Q 025278          121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGAD  198 (255)
Q Consensus       121 p~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~  198 (255)
                      |+++++++++.+++++.|||+++ +..++++|++|||+| +|++|++++|+|+.+ |+ +|++++++++|+++++++|++
T Consensus       163 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~~lGa~  240 (378)
T 3uko_A          163 DPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFG-LGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAKKFGVN  240 (378)
T ss_dssp             CTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEEC-CSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHHTTTCC
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999999999999998 678999999999999 599999999999996 87 899999999999999999999


Q ss_pred             EEEcCC--Ccccccc-----CCCccEEEECCCCccceeeeeeccccCC-ceEEEEeeccC
Q 025278          199 LAIDYT--KENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQE-KSLINFGLFRQ  250 (255)
Q Consensus       199 ~v~~~~--~~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~~G~~~~  250 (255)
                      +++|+.  +.++.+.     .+++|+||||+|+......++++++ ++ |+++.+|....
T Consensus       241 ~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~-~g~G~iv~~G~~~~  299 (378)
T 3uko_A          241 EFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCH-KGWGTSVIVGVAAS  299 (378)
T ss_dssp             EEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBC-TTTCEEEECSCCCT
T ss_pred             EEEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhh-ccCCEEEEEcccCC
Confidence            999986  3443321     2489999999999877788888888 75 99999998653

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=5.8e-46  Score=321.68  Aligned_cols=241  Identities=22%  Similarity=0.280  Sum_probs=208.2

Q ss_pred             CeEEEEcccCCCccceEEeec--ccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETN--VEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQ   78 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~--~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~   78 (255)
                      |||+++++++..   ++++ +  .|.|+|+++||+|||.+++||++|++.++|.++  ..++|.++|||++|+|+++|++
T Consensus         7 mka~~~~~~~~~---l~~~-~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~p~v~GhE~~G~V~~vG~~   80 (360)
T 1piw_A            7 FEGIAIQSHEDW---KNPK-KTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWG--NMKMPLVVGHEIVGKVVKLGPK   80 (360)
T ss_dssp             EEEEEECCSSST---TSCE-EEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTS--CCCSSEECCCCEEEEEEEECTT
T ss_pred             eEEEEEecCCCC---eeEE-eccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCC--CCCCCcccCcCceEEEEEeCCC
Confidence            899999998744   4677 7  899999999999999999999999999998764  2457999999999999999999


Q ss_pred             CC-CCCCCCEEEecc-----Cc----------cc-----cC------CCCCCcceeeEEeeeCCceEeCCCCCCHHhhhc
Q 025278           79 VK-KFKVGDEVYGDI-----NE----------KA-----LD------HPKRNGSLAEYTAVEENLLALKPKNLSFVEAAS  131 (255)
Q Consensus        79 v~-~~~~Gd~V~~~~-----~~----------~~-----~~------~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~  131 (255)
                      ++ +|++||||...+     ..          .+     ..      +....|+|+||+++|.+.++++|+++++++++.
T Consensus        81 v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~  160 (360)
T 1piw_A           81 SNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAP  160 (360)
T ss_dssp             CCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCHHHHGG
T ss_pred             CCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCHHHhhh
Confidence            99 999999995421     10          00     01      223579999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCc-cccc
Q 025278          132 LPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKE-NIED  210 (255)
Q Consensus       132 l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~  210 (255)
                      +++++.|||+++++.++++|++|||+|+ |++|++++|+|+.+ |++|++++++++|+++++++|+++++|+.+. ++.+
T Consensus       161 l~~~~~ta~~~l~~~~~~~g~~VlV~Ga-G~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~  238 (360)
T 1piw_A          161 LLCGGLTVYSPLVRNGCGPGKKVGIVGL-GGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGE  238 (360)
T ss_dssp             GGTHHHHHHHHHHHTTCSTTCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHH
T ss_pred             hhhhHHHHHHHHHHcCCCCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHH
Confidence            9999999999998889999999999996 99999999999996 8999999999999999999999999998765 5433


Q ss_pred             -cCCCccEEEECCCC--ccceeeeeeccccCCceEEEEeeccC
Q 025278          211 -LPEKFDVVFDAVGK--MCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       211 -~~~~~d~vid~~G~--~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                       ..+++|+|||++|.  ......++++++ ++|+++.+|...+
T Consensus       239 ~~~~~~D~vid~~g~~~~~~~~~~~~~l~-~~G~iv~~g~~~~  280 (360)
T 1piw_A          239 KYFDTFDLIVVCASSLTDIDFNIMPKAMK-VGGRIVSISIPEQ  280 (360)
T ss_dssp             HSCSCEEEEEECCSCSTTCCTTTGGGGEE-EEEEEEECCCCCS
T ss_pred             HhhcCCCEEEECCCCCcHHHHHHHHHHhc-CCCEEEEecCCCC
Confidence             23589999999998  666677788887 7899999998765

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=3.1e-46  Score=323.62  Aligned_cols=237  Identities=30%  Similarity=0.426  Sum_probs=208.3

Q ss_pred             CeEEEEccc---CCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCC
Q 025278            1 MKAWVYKEY---GNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGS   77 (255)
Q Consensus         1 mka~v~~~~---~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~   77 (255)
                      |||++++++   +.+ ..++++ +.|.|+|+++||+||+.+++||++|++.+.|.++  ...+|.++|||++|+|+++|+
T Consensus        23 MkA~~~~~~~~~~~~-~~l~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~p~v~G~E~~G~V~~vG~   98 (363)
T 4dvj_A           23 MKAVGYNKPAPITDD-ASLLDI-ELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPP--DGTDWKVIGYDAAGIVSAVGP   98 (363)
T ss_dssp             EEEEEBSSCCCTTST-TSSEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC----CCSBCCCCCEEEEEEEECT
T ss_pred             eEEEEEeccCCCCCC-ceEEEe-ecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCC--CCCCCCcccceeEEEEEEeCC
Confidence            899999987   444 668998 8999999999999999999999999999998764  246789999999999999999


Q ss_pred             CCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccC-----CC
Q 025278           78 QVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFS-----AG  151 (255)
Q Consensus        78 ~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~-----~g  151 (255)
                      ++++|++||||+....      ....|+|+||+++|.+.++++|++++++++|.++++++|||+++ +..+++     +|
T Consensus        99 ~v~~~~vGdrV~~~~~------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g  172 (363)
T 4dvj_A           99 DVTLFRPGDEVFYAGS------IIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAA  172 (363)
T ss_dssp             TCCSCCTTCEEEECCC------TTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSE
T ss_pred             CCCCCCCCCEEEEccC------CCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCC
Confidence            9999999999997531      23479999999999999999999999999999999999999998 567887     89


Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc---c-CCCccEEEECCCCccc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED---L-PEKFDVVFDAVGKMCI  227 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~-~~~~d~vid~~G~~~~  227 (255)
                      ++|||+||+|++|++++|+|+.+++++|++++++++|+++++++|+++++|+.++....   . .+++|+||||+|+...
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~~~  252 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTDKH  252 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCchhh
Confidence            99999999999999999999985689999999999999999999999999987532211   1 2489999999998877


Q ss_pred             eeeeeeccccCCceEEEEeec
Q 025278          228 SIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       228 ~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ...+.++++ ++|+++.+|..
T Consensus       253 ~~~~~~~l~-~~G~iv~~g~~  272 (363)
T 4dvj_A          253 AAEIADLIA-PQGRFCLIDDP  272 (363)
T ss_dssp             HHHHHHHSC-TTCEEEECSCC
T ss_pred             HHHHHHHhc-CCCEEEEECCC
Confidence            777788888 89999999753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1e-45  Score=318.53  Aligned_cols=239  Identities=21%  Similarity=0.313  Sum_probs=206.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCC-CCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPS-LREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~-~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||++++++|..    +++ |.|.|+ ++||||+|||.++|||++|++.+.|..+   .++|.++|||++|+|+++|+++
T Consensus         1 MkAvv~~~~g~l----~v~-e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~---~~~P~i~G~E~~G~V~~vG~~V   72 (346)
T 4a2c_A            1 MKSVVNDTDGIV----RVA-ESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA---HYYPITLGHEFSGYIDAVGSGV   72 (346)
T ss_dssp             CEEEEECSSSCE----EEE-ECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS---SSSSBCCCCEEEEEEEEECTTC
T ss_pred             CCEEEEecCCCE----EEE-EEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC---CCCCccccEEEEEEEEEECCCc
Confidence            999999999875    999 899998 5799999999999999999999988753   4679999999999999999999


Q ss_pred             CCCCCCCEEEeccCcc------------------ccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           80 KKFKVGDEVYGDINEK------------------ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~------------------~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      +++++||||...+...                  ...+...+|+|+||+++|.+.++++|++++++++|++. .+.++++
T Consensus        73 ~~~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~-~~~~~~~  151 (346)
T 4a2c_A           73 DDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE-PITVGLH  151 (346)
T ss_dssp             CSCCTTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHH-HHHHHHH
T ss_pred             ccccCCCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhch-HHHHHHH
Confidence            9999999998754311                  12344568999999999999999999999999988764 4455777


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcE-EEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK-VAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~v-i~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~  214 (255)
                      +++..++++|++|+|+| +|++|++++|+|+++ |+++ ++++++++|+++++++|+++++|+.+.+..+.      .++
T Consensus       152 ~~~~~~~~~g~~VlV~G-aG~vG~~aiq~ak~~-G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g  229 (346)
T 4a2c_A          152 AFHLAQGCENKNVIIIG-AGTIGLLAIQCAVAL-GAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRF  229 (346)
T ss_dssp             HHHHTTCCTTSEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCS
T ss_pred             HHHHhccCCCCEEEEEC-CCCcchHHHHHHHHc-CCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCC
Confidence            77889999999999999 699999999999997 6654 67789999999999999999999988765432      358


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      +|+|||++|.......++++++ ++|+++.+|...++
T Consensus       230 ~d~v~d~~G~~~~~~~~~~~l~-~~G~~v~~g~~~~~  265 (346)
T 4a2c_A          230 NQLILETAGVPQTVELAVEIAG-PHAQLALVGTLHQD  265 (346)
T ss_dssp             SEEEEECSCSHHHHHHHHHHCC-TTCEEEECCCCSSC
T ss_pred             cccccccccccchhhhhhheec-CCeEEEEEeccCCC
Confidence            9999999999888888888888 89999999988764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=4.5e-46  Score=320.76  Aligned_cols=236  Identities=32%  Similarity=0.496  Sum_probs=207.8

Q ss_pred             CeEEEEcccC---CCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCC
Q 025278            1 MKAWVYKEYG---NSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGS   77 (255)
Q Consensus         1 mka~v~~~~~---~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~   77 (255)
                      |||++++++|   .+ +.++++ +.|.|+|++|||+|||.+++||++|++.+.|.    ..++|.++|||++|+|+++|+
T Consensus         3 MkA~~~~~~G~~~~~-~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~----~~~~p~i~G~e~~G~V~~vG~   76 (346)
T 3fbg_A            3 LKAIGFEQPFKLSDG-NLFKTF-NLDIPEPKVHEILVKIQSISVNPVDTKQRLMD----VSKAPRVLGFDAIGVVESVGN   76 (346)
T ss_dssp             EEEEEBSSCCCGGGC-CCCEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHTTSC----CSSSCBCCCCCEEEEEEEECT
T ss_pred             cEEEEEEeccccCCC-ceeEec-cccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC----CCCCCcCcCCccEEEEEEeCC
Confidence            8999999988   44 668999 89999999999999999999999999998876    246799999999999999999


Q ss_pred             CCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccC------C
Q 025278           78 QVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFS------A  150 (255)
Q Consensus        78 ~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~------~  150 (255)
                      ++++|++||||++...      ...+|+|+||+++|.+.++++|+++++++++.++++++|||+++ +..+++      +
T Consensus        77 ~v~~~~~GdrV~~~~~------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~  150 (346)
T 3fbg_A           77 EVTMFNQGDIVYYSGS------PDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENE  150 (346)
T ss_dssp             TCCSCCTTCEEEECCC------TTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHT
T ss_pred             CCCcCCCCCEEEEcCC------CCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCC
Confidence            9999999999998531      23479999999999999999999999999999999999999999 567887      9


Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc---c-CCCccEEEECCCCcc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED---L-PEKFDVVFDAVGKMC  226 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~-~~~~d~vid~~G~~~  226 (255)
                      |++|||+||+|++|++++|+|+.+ |++|++++++++|+++++++|+++++++.++....   . .+++|++|||+|+..
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~  229 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDM  229 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHH
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchH
Confidence            999999988999999999999985 89999999999999999999999999987532111   1 347999999999877


Q ss_pred             ceeeeeeccccCCceEEEEeeccC
Q 025278          227 ISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       227 ~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ....++++++ ++|+++.+|....
T Consensus       230 ~~~~~~~~l~-~~G~iv~~~~~~~  252 (346)
T 3fbg_A          230 YYDDMIQLVK-PRGHIATIVAFEN  252 (346)
T ss_dssp             HHHHHHHHEE-EEEEEEESSCCSS
T ss_pred             HHHHHHHHhc-cCCEEEEECCCCC
Confidence            6677778887 7899999886443

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=7.8e-46  Score=318.44  Aligned_cols=242  Identities=29%  Similarity=0.397  Sum_probs=209.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++++++.   ++++ +.|.|+|+++||+|||.+++||++|++.++|.++. ...+|.++|||++|+|+++|++++
T Consensus         1 Mka~~~~~~g~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~GhE~~G~V~~vG~~v~   75 (339)
T 1rjw_A            1 MKAAVVEQFKEP---LKIK-EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPV-KPKLPLIPGHEGVGIVEEVGPGVT   75 (339)
T ss_dssp             CEEEEBSSTTSC---CEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCSCEEEEEEEECTTCC
T ss_pred             CeEEEEcCCCCC---cEEE-EeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCc-CCCCCeeccccceEEEEEECCCCC
Confidence            999999998844   5888 89999999999999999999999999999987652 246799999999999999999999


Q ss_pred             CCCCCCEEEecc-----Ccc--------------ccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDI-----NEK--------------ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~-----~~~--------------~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      +|++||||+..+     +.+              ...+...+|+|+||+++|.+.++++|+++++++++.+++++.|||+
T Consensus        76 ~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~  155 (339)
T 1rjw_A           76 HLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYK  155 (339)
T ss_dssp             SCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHH
T ss_pred             cCCCCCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHH
Confidence            999999998642     110              0112345799999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc----CCCccE
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL----PEKFDV  217 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~----~~~~d~  217 (255)
                      ++++.++++|++|+|+|+ |++|++++|+|+.+ |++|++++++++|+++++++|++.++|+.+.++.+.    .+++|+
T Consensus       156 ~l~~~~~~~g~~VlV~Ga-G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~  233 (339)
T 1rjw_A          156 ALKVTGAKPGEWVAIYGI-GGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHA  233 (339)
T ss_dssp             HHHHHTCCTTCEEEEECC-STTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCE
Confidence            998779999999999996 89999999999996 899999999999999999999999999876554321    258999


Q ss_pred             EEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          218 VFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       218 vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +||++|.......++++++ ++|+++.+|...+
T Consensus       234 vid~~g~~~~~~~~~~~l~-~~G~~v~~g~~~~  265 (339)
T 1rjw_A          234 AVVTAVSKPAFQSAYNSIR-RGGACVLVGLPPE  265 (339)
T ss_dssp             EEESSCCHHHHHHHHHHEE-EEEEEEECCCCSS
T ss_pred             EEECCCCHHHHHHHHHHhh-cCCEEEEecccCC
Confidence            9999998766677777777 7899999998765

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-45  Score=317.37  Aligned_cols=245  Identities=34%  Similarity=0.438  Sum_probs=211.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.+ +.++++ +.+.|+|+++||+|||.+++||++|+++++|.++. ...+|.++|||++|+|+++|++++
T Consensus         1 Mka~~~~~~g~~-~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~E~~G~V~~vG~~v~   77 (343)
T 2eih_A            1 MRAVVMRARGGP-EVLEVA-DLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASP-KLPLPHVLGADGSGVVDAVGPGVE   77 (343)
T ss_dssp             CEEEEECSSSSG-GGEEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSST-TCCSSEECCSEEEEEEEEECSSCC
T ss_pred             CeEEEEecCCCC-ceEEEE-ecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCC-CCCCCcccccceEEEEEEECCCCC
Confidence            999999999976 668898 89999999999999999999999999999987642 246799999999999999999999


Q ss_pred             CCCCCCEEEeccCccc------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           81 KFKVGDEVYGDINEKA------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      +|++||||+..+...+                  ..+....|+|+||+++|.+.++++|+++++++++.+++++.|||++
T Consensus        78 ~~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~a  157 (343)
T 2eih_A           78 GFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQM  157 (343)
T ss_dssp             SCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHH
T ss_pred             CCCCCCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHH
Confidence            9999999995431111                  0123347999999999999999999999999999999999999999


Q ss_pred             HHh-cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c--CCCc
Q 025278          143 LER-SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L--PEKF  215 (255)
Q Consensus       143 l~~-~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~--~~~~  215 (255)
                      +.. .++++|++|||+|++|++|++++|+++.. |++|+++++++++++.++++|++.++|+.+.++.+    .  .+++
T Consensus       158 l~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~  236 (343)
T 2eih_A          158 VVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGA  236 (343)
T ss_dssp             HTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCE
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCc
Confidence            976 68999999999998899999999999995 89999999999999999999999999987655432    1  2479


Q ss_pred             cEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          216 DVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       216 d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      |++||++| ......+.++++ ++|+++.+|...++
T Consensus       237 d~vi~~~g-~~~~~~~~~~l~-~~G~~v~~g~~~~~  270 (343)
T 2eih_A          237 DKVVDHTG-ALYFEGVIKATA-NGGRIAIAGASSGY  270 (343)
T ss_dssp             EEEEESSC-SSSHHHHHHHEE-EEEEEEESSCCCSC
T ss_pred             eEEEECCC-HHHHHHHHHhhc-cCCEEEEEecCCCC
Confidence            99999999 555666677777 78999999987754

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-45  Score=318.90  Aligned_cols=232  Identities=27%  Similarity=0.386  Sum_probs=198.6

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.+ +.++++ +.|.|+|+++||+|||.+++||++|++.++|.++ ...++|.++|||++|+|+++|++++
T Consensus         4 mka~~~~~~g~~-~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~~~p~v~G~e~~G~V~~vG~~v~   80 (349)
T 4a27_A            4 MRAVVLAGFGGL-NKLRLF-RKAMPEPQDGELKIRVKACGLNFIDLMVRQGNID-NPPKTPLVPGFECSGIVEALGDSVK   80 (349)
T ss_dssp             EEEEEECSSSSG-GGEEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSS-SCCCSSBCCCSEEEEEEEEECTTCC
T ss_pred             eEEEEEccCCCc-ceeEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcC-CCCCCCccccceeEEEEEEeCCCCC
Confidence            899999999987 668999 8999999999999999999999999999999865 2357899999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga  159 (255)
                      +|++||||++..         .+|+|+||+++|.+.++++|+++++++++.++++++|||+++ +..++++|++|+|+|+
T Consensus        81 ~~~~GdrV~~~~---------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga  151 (349)
T 4a27_A           81 GYEIGDRVMAFV---------NYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSA  151 (349)
T ss_dssp             SCCTTCEEEEEC---------SSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             CCCCCCEEEEec---------CCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            999999999875         369999999999999999999999999999999999999999 5789999999999998


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc-----CCCccEEEECCCCccceeeeeec
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL-----PEKFDVVFDAVGKMCISIVYQKC  234 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~  234 (255)
                      +|++|++++|+|+.+++.+|++++ +++|++.++ +|+++++| .+.++.+.     .+++|+||||+|+... ..++.+
T Consensus       152 ~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~-~~~~~~~~~~~~~~~g~Dvv~d~~g~~~~-~~~~~~  227 (349)
T 4a27_A          152 GGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFD-RNADYVQEVKRISAEGVDIVLDCLCGDNT-GKGLSL  227 (349)
T ss_dssp             TSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEE-TTSCHHHHHHHHCTTCEEEEEEECC--------CTT
T ss_pred             CcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEc-CCccHHHHHHHhcCCCceEEEECCCchhH-HHHHHH
Confidence            899999999999986457777776 667888888 99999998 55444332     3589999999998765 667788


Q ss_pred             cccCCceEEEEeecc
Q 025278          235 DKFQEKSLINFGLFR  249 (255)
Q Consensus       235 ~~~~~G~~v~~G~~~  249 (255)
                      ++ ++|+++.+|...
T Consensus       228 l~-~~G~~v~~G~~~  241 (349)
T 4a27_A          228 LK-PLGTYILYGSSN  241 (349)
T ss_dssp             EE-EEEEEEEEC---
T ss_pred             hh-cCCEEEEECCCc
Confidence            87 789999999864

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-45  Score=319.59  Aligned_cols=242  Identities=23%  Similarity=0.268  Sum_probs=207.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++++.++++.   ++++ +.|.|+|+++||+|||.+++||++|++.++|.++.  ..+|.++|||++|+|+++|++++
T Consensus        23 ~~a~~~~~~~~~---l~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~P~v~GhE~~G~V~~vG~~V~   96 (369)
T 1uuf_A           23 IKAVGAYSAKQP---LEPM-DITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG--TVYPCVPGHEIVGRVVAVGDQVE   96 (369)
T ss_dssp             CEEEEBSSTTSC---CEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC--CCSSBCCCCCEEEEEEEECTTCC
T ss_pred             EEEEEEcCCCCC---cEEE-EecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCC--CCCCeecccCceEEEEEECCCCC
Confidence            889988876544   7888 89999999999999999999999999999987642  45799999999999999999999


Q ss_pred             CCCCCCEEEeccCc---------------ccc------------CCCCCCcceeeEEeeeCCceEeCCCC-CCHHhhhcc
Q 025278           81 KFKVGDEVYGDINE---------------KAL------------DHPKRNGSLAEYTAVEENLLALKPKN-LSFVEAASL  132 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~---------------~~~------------~~~~~~g~~~~~~~~~~~~~~~lp~~-~~~~~aa~l  132 (255)
                      +|++||||+..+..               .+.            .+....|+|+||+++|.+.++++|++ +++++++.+
T Consensus        97 ~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l  176 (369)
T 1uuf_A           97 KYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPL  176 (369)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHGGG
T ss_pred             CCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhhhh
Confidence            99999999864210               000            02234699999999999999999999 999999999


Q ss_pred             chhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc-cc
Q 025278          133 PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE-DL  211 (255)
Q Consensus       133 ~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~-~~  211 (255)
                      ++++.|||+++++.++++|++|||+| +|++|++++|+|+.+ |++|++++++++|+++++++|+++++|+.+.++. +.
T Consensus       177 ~~~~~tA~~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~  254 (369)
T 1uuf_A          177 LCAGITTYSPLRHWQAGPGKKVGVVG-IGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAH  254 (369)
T ss_dssp             GTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTT
T ss_pred             hhhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHh
Confidence            99999999999888999999999999 599999999999996 9999999999999999999999999998765532 33


Q ss_pred             CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          212 PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       212 ~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      .+++|+|||++|.......++++++ ++|+++.+|...++
T Consensus       255 ~~g~Dvvid~~g~~~~~~~~~~~l~-~~G~iv~~G~~~~~  293 (369)
T 1uuf_A          255 LKSFDFILNTVAAPHNLDDFTTLLK-RDGTMTLVGAPATP  293 (369)
T ss_dssp             TTCEEEEEECCSSCCCHHHHHTTEE-EEEEEEECCCC---
T ss_pred             hcCCCEEEECCCCHHHHHHHHHHhc-cCCEEEEeccCCCC
Confidence            4689999999998766677778887 78999999987654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=1.8e-45  Score=317.91  Aligned_cols=236  Identities=29%  Similarity=0.453  Sum_probs=209.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC-
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV-   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v-   79 (255)
                      |||+++++++.+ +.++++ +.|.|+|+++||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|+++ 
T Consensus        23 Mka~~~~~~g~~-~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~p~v~G~E~~G~V~~vG~~v~   99 (354)
T 2j8z_A           23 MLAVHFDKPGGP-ENLYVK-EVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP-PPGASNILGLEASGHVAELGPGCQ   99 (354)
T ss_dssp             EEEEEESSCSSG-GGEEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CTTSCSSSCSEEEEEEEEECSCC-
T ss_pred             eeEEEEccCCCc-cceEEe-ecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCC-CCCCCcccceeeEEEEEEECCCcC
Confidence            899999999976 668998 89999999999999999999999999999997653 23578999999999999999999 


Q ss_pred             CCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEc
Q 025278           80 KKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLG  158 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~g  158 (255)
                      ++|++||||++..         ..|+|+||+++|.+.++++|+++++++||.++++++|||+++ +..++++|++|+|+|
T Consensus       100 ~~~~vGdrV~~~~---------~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~G  170 (354)
T 2j8z_A          100 GHWKIGDTAMALL---------PGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHA  170 (354)
T ss_dssp             -CCCTTCEEEEEC---------SSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESS
T ss_pred             CCCCCCCEEEEec---------CCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEEC
Confidence            9999999999864         259999999999999999999999999999999999999999 678999999999999


Q ss_pred             CCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeee
Q 025278          159 GAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQ  232 (255)
Q Consensus       159 a~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~  232 (255)
                      |+|++|++++|+++.. |++|+++++++++++.++++|++.++|+.+.++.+.      .+++|++|||+|+. ....+.
T Consensus       171 a~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~~  248 (354)
T 2j8z_A          171 GLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGS-YWEKNV  248 (354)
T ss_dssp             TTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCGG-GHHHHH
T ss_pred             CccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCch-HHHHHH
Confidence            9999999999999995 999999999999999999999999999876654321      24799999999986 445567


Q ss_pred             eccccCCceEEEEeeccCC
Q 025278          233 KCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       233 ~~~~~~~G~~v~~G~~~~~  251 (255)
                      ++++ ++|+++.+|..++.
T Consensus       249 ~~l~-~~G~iv~~G~~~~~  266 (354)
T 2j8z_A          249 NCLA-LDGRWVLYGLMGGG  266 (354)
T ss_dssp             HHEE-EEEEEEECCCTTCS
T ss_pred             Hhcc-CCCEEEEEeccCCC
Confidence            7777 78999999987653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=4.4e-46  Score=323.43  Aligned_cols=238  Identities=27%  Similarity=0.408  Sum_probs=208.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++++++    ++++ +.|.|+|++|||+||+.+++||++|++.++|.++   .++|.++|||++|+|+++|++++
T Consensus        24 mkA~v~~~~~~----l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~---~~~p~v~G~e~~G~V~~vG~~v~   95 (370)
T 4ej6_A           24 MKAVRLESVGN----ISVR-NVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP---STPPVTLGHEFCGIVVEAGSAVR   95 (370)
T ss_dssp             EEEEEEEETTE----EEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSEECCCSEEEEEEEECTTCC
T ss_pred             eEEEEEecCCc----eEEE-EccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC---CCCCeecCcceEEEEEEECCCCC
Confidence            89999998875    5898 8999999999999999999999999999999763   56799999999999999999999


Q ss_pred             CCCCCCEEEeccCcc------------------ccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHH
Q 025278           81 KFKVGDEVYGDINEK------------------ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEG  142 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~------------------~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  142 (255)
                      +|++||||+..+...                  ...+...+|+|+||+++|.+.++++|+++++++|+ ++.++.|||++
T Consensus        96 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~~ta~~~  174 (370)
T 4ej6_A           96 DIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPLACCLHG  174 (370)
T ss_dssp             SSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHHHHHHHH
T ss_pred             CCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHHHHHHHH
Confidence            999999998753211                  11234467999999999999999999999998887 66788899999


Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCcccccc--------CC
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL--------PE  213 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~--------~~  213 (255)
                      ++..++++|++|||+| +|++|++++|+|+++ |+ +|++++++++|+++++++|++.++|+.+.++.+.        .+
T Consensus       175 l~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~g  252 (370)
T 4ej6_A          175 VDLSGIKAGSTVAILG-GGVIGLLTVQLARLA-GATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPG  252 (370)
T ss_dssp             HHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTT
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCC
Confidence            9889999999999999 599999999999996 87 8889999999999999999999999977664321        23


Q ss_pred             CccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          214 KFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       214 ~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++|+||||+|.......+.++++ ++|+++.+|...+
T Consensus       253 g~Dvvid~~G~~~~~~~~~~~l~-~~G~vv~~G~~~~  288 (370)
T 4ej6_A          253 GVDVVIECAGVAETVKQSTRLAK-AGGTVVILGVLPQ  288 (370)
T ss_dssp             CEEEEEECSCCHHHHHHHHHHEE-EEEEEEECSCCCT
T ss_pred             CCCEEEECCCCHHHHHHHHHHhc-cCCEEEEEeccCC
Confidence            89999999998777777888888 7899999998765

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.1e-45  Score=316.21  Aligned_cols=241  Identities=25%  Similarity=0.356  Sum_probs=204.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCC-CCCCeEEEEEeEeecChHhHHHHcCCCCC-CCCCCCcccccceEEEEEEeCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPS-LREDQVLIKVVAAALNPIDFKRMLGAFSA-TDSPLPTIPGYDVAGVVEKVGSQ   78 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~-~~~~eV~V~v~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~~G~~   78 (255)
                      |||++++++++.   ++++ +.|.|+ |+++||+|||.+++||++|++.++|.++. ....+|.++|||++|+|+++|++
T Consensus        16 mka~~~~~~g~~---l~~~-~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~   91 (359)
T 1h2b_A           16 LKAARLHEYNKP---LRIE-DVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEG   91 (359)
T ss_dssp             -CEEEESSTTSC---CEEE-CCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTT
T ss_pred             ceEEEEecCCCC---cEEE-EccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCC
Confidence            899999998754   5888 899999 99999999999999999999999987531 02357899999999999999999


Q ss_pred             CCCCCCCCEEEeccCcc------------------ccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhh---ccchhHH
Q 025278           79 VKKFKVGDEVYGDINEK------------------ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAA---SLPLATE  137 (255)
Q Consensus        79 v~~~~~Gd~V~~~~~~~------------------~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa---~l~~~~~  137 (255)
                      +++|++||||+......                  ...+...+|+|+||+++|.+.++++|+++++++|+   .+++++.
T Consensus        92 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~  171 (359)
T 1h2b_A           92 VEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGI  171 (359)
T ss_dssp             CCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHH
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhccchhhhHH
Confidence            99999999997753211                  01122357999999999999999999999999998   7888899


Q ss_pred             HHHHHHHh--cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc----c
Q 025278          138 TAYEGLER--SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED----L  211 (255)
Q Consensus       138 ta~~~l~~--~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~----~  211 (255)
                      |||++++.  .++++|++|||+|+ |++|++++|+|++++|++|++++++++|+++++++|+++++|+++. +.+    .
T Consensus       172 ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~-~~~~v~~~  249 (359)
T 1h2b_A          172 TAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRD-PVKQVMEL  249 (359)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSC-HHHHHHHH
T ss_pred             HHHHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccch-HHHHHHHH
Confidence            99999977  89999999999996 9999999999998437899999999999999999999999998765 322    2


Q ss_pred             C--CCccEEEECCCCcc--ceeeeeeccccCCceEEEEeeccC
Q 025278          212 P--EKFDVVFDAVGKMC--ISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 ~--~~~d~vid~~G~~~--~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .  +++|+|||++|+..  ....++++   ++|+++.+|...+
T Consensus       250 ~~g~g~Dvvid~~G~~~~~~~~~~~~~---~~G~~v~~g~~~~  289 (359)
T 1h2b_A          250 TRGRGVNVAMDFVGSQATVDYTPYLLG---RMGRLIIVGYGGE  289 (359)
T ss_dssp             TTTCCEEEEEESSCCHHHHHHGGGGEE---EEEEEEECCCSSC
T ss_pred             hCCCCCcEEEECCCCchHHHHHHHhhc---CCCEEEEEeCCCC
Confidence            2  37999999999875  55566655   5799999998664

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.2e-45  Score=312.38  Aligned_cols=236  Identities=26%  Similarity=0.337  Sum_probs=208.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.+ ..++++ +.|.|+|+++||+|||.+++||++|++.+.|.++  ...+|.++|||++|+|+++|++++
T Consensus         2 Mka~~~~~~g~~-~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~p~v~G~E~~G~V~~vG~~v~   77 (327)
T 1qor_A            2 ATRIEFHKHGGP-EVLQAV-EFTPADPAENEIQVENKAIGINFIDTYIRSGLYP--PPSLPSGLGTEAAGIVSKVGSGVK   77 (327)
T ss_dssp             CEEEEBSSCCSG-GGCEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSC--CSSSSBCCCSCEEEEEEEECTTCC
T ss_pred             cEEEEEcCCCCh-hheEEe-ccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCC--CCCCCCCCCceeEEEEEEECCCCC
Confidence            999999999876 678998 8999999999999999999999999999998764  235789999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                      +|++|||| +.+.       ..+|+|+||+++|.+.++++|+++++++++.++++++|||+++. ..++++|++|+|+||
T Consensus        78 ~~~~GdrV-~~~g-------~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga  149 (327)
T 1qor_A           78 HIKAGDRV-VYAQ-------SALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA  149 (327)
T ss_dssp             SCCTTCEE-EESC-------CSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             CCCCCCEE-EECC-------CCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC
Confidence            99999999 4321       12599999999999999999999999999999999999999996 789999999999999


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++++|+++.. |++|+++++++++++.++++|++.++|+.+.++.+.      .+++|++||++| ......+.+
T Consensus       150 ~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-~~~~~~~~~  227 (327)
T 1qor_A          150 AGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-RDTWERSLD  227 (327)
T ss_dssp             TBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-GGGHHHHHH
T ss_pred             CCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc-hHHHHHHHH
Confidence            999999999999996 899999999999999999999999999876654321      247999999999 555666677


Q ss_pred             ccccCCceEEEEeeccCC
Q 025278          234 CDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~~~  251 (255)
                      +++ ++|+++.+|..++.
T Consensus       228 ~l~-~~G~iv~~g~~~~~  244 (327)
T 1qor_A          228 CLQ-RRGLMVSFGNSSGA  244 (327)
T ss_dssp             TEE-EEEEEEECCCTTCC
T ss_pred             Hhc-CCCEEEEEecCCCC
Confidence            777 78999999987654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.5e-45  Score=315.71  Aligned_cols=235  Identities=34%  Similarity=0.531  Sum_probs=205.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++   ++++ +.|.|+|++|||+||+.+++||++|++++.|..+....++|.++|||++|+|+++|++++
T Consensus         8 mka~~~~~~~~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~   83 (343)
T 3gaz_A            8 MIAAVVEEANGP---FVLR-KLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVD   83 (343)
T ss_dssp             EEEEEECSTTCC---EEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             heEEEEecCCCc---eEEE-eccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCC
Confidence            899999999875   6888 899999999999999999999999999999876433467899999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga  159 (255)
                      +|++||||++.....    ...+|+|+||+++|.+.++++|+++++++++.++++++|||+++ +..++++|++|||+||
T Consensus        84 ~~~vGdrV~~~~~g~----~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga  159 (343)
T 3gaz_A           84 SFRVGDAVFGLTGGV----GGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGG  159 (343)
T ss_dssp             SCCTTCEEEEECCSS----TTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETT
T ss_pred             CCCCCCEEEEEeCCC----CCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecC
Confidence            999999999864321    12479999999999999999999999999999999999999999 7899999999999999


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++++|+|+.. |++|+++ .+++|+++++++|++. ++ .+.++.+.      .+++|++|||+|+. ....+..
T Consensus       160 ~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~lGa~~-i~-~~~~~~~~~~~~~~~~g~D~vid~~g~~-~~~~~~~  234 (343)
T 3gaz_A          160 GGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDLGATP-ID-ASREPEDYAAEHTAGQGFDLVYDTLGGP-VLDASFS  234 (343)
T ss_dssp             TSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHHTSEE-EE-TTSCHHHHHHHHHTTSCEEEEEESSCTH-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHcCCCE-ec-cCCCHHHHHHHHhcCCCceEEEECCCcH-HHHHHHH
Confidence            999999999999995 9999998 8999999999999998 77 44444331      24899999999974 4555667


Q ss_pred             ccccCCceEEEEeecc
Q 025278          234 CDKFQEKSLINFGLFR  249 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~  249 (255)
                      +++ ++|+++.+|...
T Consensus       235 ~l~-~~G~iv~~g~~~  249 (343)
T 3gaz_A          235 AVK-RFGHVVSCLGWG  249 (343)
T ss_dssp             HEE-EEEEEEESCCCS
T ss_pred             HHh-cCCeEEEEcccC
Confidence            777 789999999765

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=1.1e-45  Score=315.60  Aligned_cols=239  Identities=23%  Similarity=0.257  Sum_probs=206.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++ +.++++ +.|.|+|++|||+||+.+++||++|++.++|.++ ...++|.++|||++|+|+++|  ++
T Consensus         1 MkA~~~~~~g~~-~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~~~p~v~G~E~~G~V~~~G--v~   75 (324)
T 3nx4_A            1 MQALILEQQDGK-TLASVQ-HLEESQLPAGDVTVDVHWSSLNYKDALAITGKGK-IIRHFPMIPGIDFAGTVHASE--DP   75 (324)
T ss_dssp             CEEEEEEESSSS-EEEEEE-ECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTT-CCCSSSBCCCSEEEEEEEEES--ST
T ss_pred             CceEEEecCCCC-ceeeEe-ecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCC-CCCCCCccccceeEEEEEEeC--CC
Confidence            999999999987 678999 8999999999999999999999999999999765 235779999999999999998  57


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH---hcccCCCC-EEEE
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE---RSAFSAGK-SILV  156 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~---~~~~~~g~-~VlI  156 (255)
                      +|++||||++...   ..+...+|+|+||+++|.+.++++|+++++++|+.++.+++|||+++.   +.++++++ +|||
T Consensus        76 ~~~vGdrV~~~~~---~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV  152 (324)
T 3nx4_A           76 RFHAGQEVLLTGW---GVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVV  152 (324)
T ss_dssp             TCCTTCEEEEECT---TBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred             CCCCCCEEEEccc---ccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEE
Confidence            8999999997642   223345799999999999999999999999999999999999998873   45566633 4999


Q ss_pred             EcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc-c-CCCccEEEECCCCccceeeeeec
Q 025278          157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED-L-PEKFDVVFDAVGKMCISIVYQKC  234 (255)
Q Consensus       157 ~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~-~~~~d~vid~~G~~~~~~~~~~~  234 (255)
                      +|++|++|++++|+|+++ |++|++++++++|+++++++|+++++|+.+.+... . .+++|++|||+|+. ....++++
T Consensus       153 ~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~  230 (324)
T 3nx4_A          153 TGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGDK-VLAKVLAQ  230 (324)
T ss_dssp             SSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCHH-HHHHHHHT
T ss_pred             ECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCcH-HHHHHHHH
Confidence            998899999999999996 89999999999999999999999999987654321 1 24799999999976 55666777


Q ss_pred             cccCCceEEEEeeccC
Q 025278          235 DKFQEKSLINFGLFRQ  250 (255)
Q Consensus       235 ~~~~~G~~v~~G~~~~  250 (255)
                      ++ ++|+++.+|..++
T Consensus       231 l~-~~G~iv~~G~~~~  245 (324)
T 3nx4_A          231 MN-YGGCVAACGLAGG  245 (324)
T ss_dssp             EE-EEEEEEECCCTTC
T ss_pred             Hh-cCCEEEEEecCCC
Confidence            77 7899999998765

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=5.4e-45  Score=317.02  Aligned_cols=239  Identities=22%  Similarity=0.265  Sum_probs=205.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++   ++++ +.|.|+|+++||+|||.+++||++|+++++|.++   ..+|.++|||++|+|+++|++++
T Consensus        10 mka~~~~~~g~~---l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~P~v~GhE~~G~V~~vG~~v~   82 (373)
T 1p0f_A           10 CKAAVAWEPHKP---LSLE-TITVAPPKAHEVRIKILASGICGSDSSVLKEIIP---SKFPVILGHEAVGVVESIGAGVT   82 (373)
T ss_dssp             EEEEEBSSTTSC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCCEEEEEEEECTTCC
T ss_pred             eEEEEEEcCCCC---eeEE-EeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC---CCCCcccCcCceEEEEEECCCCC
Confidence            899999998854   5888 8999999999999999999999999999998764   46799999999999999999999


Q ss_pred             CCCCCCEEEeccCccc--------------cC-------CC------------------CCCcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINEKA--------------LD-------HP------------------KRNGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~--------------~~-------~~------------------~~~g~~~~~~~~~~~~~~~lp  121 (255)
                      +|++||||+..+...+              ..       +.                  ...|+|+||+++|.+.++++|
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  162 (373)
T 1p0f_A           83 CVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKID  162 (373)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEEC
T ss_pred             ccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhhEEECC
Confidence            9999999987642110              00       10                  124899999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCE
Q 025278          122 KNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADL  199 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~  199 (255)
                      ++++++ ++.+++++.|||+++ +..++++|++|||+| +|++|++++|+|+++ |+ +|++++++++|+++++++|+++
T Consensus       163 ~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~  239 (373)
T 1p0f_A          163 PKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIELGATE  239 (373)
T ss_dssp             TTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCcE
Confidence            999999 999999999999998 578999999999999 699999999999996 87 7999999999999999999999


Q ss_pred             EEcCCC--ccccc----c-CCCccEEEECCCCccceeeeeeccccCC-ceEEEEeeccC
Q 025278          200 AIDYTK--ENIED----L-PEKFDVVFDAVGKMCISIVYQKCDKFQE-KSLINFGLFRQ  250 (255)
Q Consensus       200 v~~~~~--~~~~~----~-~~~~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~~G~~~~  250 (255)
                      ++|+.+  .++.+    . .+++|+|||++|.......++++++ ++ |+++.+|....
T Consensus       240 vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~-~~~G~iv~~G~~~~  297 (373)
T 1p0f_A          240 CLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTY-CGSGVTVVLGLASP  297 (373)
T ss_dssp             EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBC-TTTCEEEECCCCCT
T ss_pred             EEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHh-cCCCEEEEEccCCC
Confidence            999864  33322    1 2389999999998777777788888 78 99999998654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=3.7e-45  Score=313.52  Aligned_cols=238  Identities=26%  Similarity=0.378  Sum_probs=205.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCC-CCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAF-SATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++++++.+ +.++++ +.|.|+|+++||+|||.+++||++|+++++|.+ +.....+|.++|||++|+|+++|+++
T Consensus         2 Mka~~~~~~g~~-~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v   79 (333)
T 1wly_A            2 VMAAVIHKKGGP-DNFVWE-EVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGV   79 (333)
T ss_dssp             CEEEEESSCSSG-GGEEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTC
T ss_pred             cEEEEEcccCCc-ceeEEE-eccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCC
Confidence            899999999876 678998 899999999999999999999999999999865 21113578999999999999999999


Q ss_pred             CCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHh--hhccchhHHHHHHHHH-hcccCCCCEEEE
Q 025278           80 KKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVE--AASLPLATETAYEGLE-RSAFSAGKSILV  156 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~--aa~l~~~~~ta~~~l~-~~~~~~g~~VlI  156 (255)
                      ++|++||||+....        ..|+|+||+++|.+.++++|+++++++  ++.++++++|||+++. ..++++|++|+|
T Consensus        80 ~~~~~GdrV~~~~~--------~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV  151 (333)
T 1wly_A           80 TDFTVGERVCTCLP--------PLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLI  151 (333)
T ss_dssp             CSCCTTCEEEECSS--------SCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEE
T ss_pred             CCCCCCCEEEEecC--------CCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEE
Confidence            99999999977531        259999999999999999999999999  8999999999999995 689999999999


Q ss_pred             EcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceee
Q 025278          157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIV  230 (255)
Q Consensus       157 ~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~  230 (255)
                      +|++|++|++++|+++.. |++|+++++++++++.++++|++.++|+.+.++.+.      .+++|++|||+|+ .....
T Consensus       152 ~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~-~~~~~  229 (333)
T 1wly_A          152 HAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGK-DTLQK  229 (333)
T ss_dssp             TTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCT-TTHHH
T ss_pred             ECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcH-HHHHH
Confidence            998999999999999995 899999999999999999999999999876554321      2479999999998 45566


Q ss_pred             eeeccccCCceEEEEeeccCC
Q 025278          231 YQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       231 ~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      +.++++ ++|+++.+|..++.
T Consensus       230 ~~~~l~-~~G~iv~~g~~~~~  249 (333)
T 1wly_A          230 SLDCLR-PRGMCAAYGHASGV  249 (333)
T ss_dssp             HHHTEE-EEEEEEECCCTTCC
T ss_pred             HHHhhc-cCCEEEEEecCCCC
Confidence            677777 78999999987643

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4e-45  Score=317.66  Aligned_cols=239  Identities=22%  Similarity=0.264  Sum_probs=207.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++   ++++ +.|.|+|+++||+|||.+++||++|+++++|.++   ..+|.++|||++|+|+++|++++
T Consensus         7 mka~~~~~~g~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~P~v~GhE~~G~V~~vG~~v~   79 (371)
T 1f8f_A            7 IIAAVTPCKGAD---FELQ-ALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP---VPLPAVLGHEGSGIIEAIGPNVT   79 (371)
T ss_dssp             EEEEEBCSTTCC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCEEEEEEEEECTTCC
T ss_pred             ceEEEEcCCCCC---eEEE-EecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC---CCCCcccCcccceEEEEeCCCCC
Confidence            899999998854   5888 8999999999999999999999999999998764   45799999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc-----------------------------------CCC------CCCcceeeEEeeeCCceEe
Q 025278           81 KFKVGDEVYGDINEKAL-----------------------------------DHP------KRNGSLAEYTAVEENLLAL  119 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~-----------------------------------~~~------~~~g~~~~~~~~~~~~~~~  119 (255)
                      +|++||||+..+ ..+.                                   .+.      ...|+|+||+++|.+.+++
T Consensus        80 ~~~~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~  158 (371)
T 1f8f_A           80 ELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVK  158 (371)
T ss_dssp             SCCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEE
Confidence            999999999753 1000                                   010      1258999999999999999


Q ss_pred             CCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCC
Q 025278          120 KPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGA  197 (255)
Q Consensus       120 lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~  197 (255)
                      +|+++++++++.+++++.|||+++ +..++++|++|||+| +|++|++++|+|+.+ |+ +|++++++++|+++++++|+
T Consensus       159 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa  236 (371)
T 1f8f_A          159 VTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGA  236 (371)
T ss_dssp             ECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCC
Confidence            999999999999999999999999 678999999999999 799999999999996 87 68899999999999999999


Q ss_pred             CEEEcCCCcccccc-----CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          198 DLAIDYTKENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       198 ~~v~~~~~~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++++|+.+.++.+.     .+++|+|||++|.......+.++++ ++|+++.+|...+
T Consensus       237 ~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~-~~G~iv~~G~~~~  293 (371)
T 1f8f_A          237 THVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALG-ILGKIAVVGAPQL  293 (371)
T ss_dssp             SEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEE-EEEEEEECCCCST
T ss_pred             CEEecCCccCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHh-cCCEEEEeCCCCC
Confidence            99999877654321     2379999999998776777788887 7899999998763

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=3.8e-45  Score=316.22  Aligned_cols=237  Identities=25%  Similarity=0.382  Sum_probs=202.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++.+++.+.+.++++ +.|.|+|+++||+|||.++|||++|++.++|.++. ...+|.++|||++|+|+++|++++
T Consensus        27 mka~~~~~~g~~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~P~v~G~E~~G~V~~vG~~v~  104 (357)
T 1zsy_A           27 VRALVYGHHGDPAKVVELK-NLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGL-LPELPAVGGNEGVAQVVAVGSNVT  104 (357)
T ss_dssp             EEEEEESSSSCHHHHEEEE-EECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC-CCCSSEECCSCCEEEEEEECTTCC
T ss_pred             hEEEEEecCCCccceEEEe-eccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCC-CCCCCccccceEEEEEEEeCCCCC
Confidence            8999999998753347888 89999999999999999999999999999997652 235789999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                      +|++||||++...        ..|+|+||+++|.+.++++|+++++++|+.++++.+|||+++. ..++++|++|||+|+
T Consensus       105 ~~~vGdrV~~~~~--------~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga  176 (357)
T 1zsy_A          105 GLKPGDWVIPANA--------GLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNAS  176 (357)
T ss_dssp             SCCTTCEEEESSS--------CSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESST
T ss_pred             CCCCCCEEEEcCC--------CCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCC
Confidence            9999999998642        2699999999999999999999999999999988899999995 578999999999998


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecCh----hhHHHHHHcCCCEEEcCCCc---cccccCC---CccEEEECCCCcccee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSST----AKLDLLRSLGADLAIDYTKE---NIEDLPE---KFDVVFDAVGKMCISI  229 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~----~~~~~~~~~g~~~v~~~~~~---~~~~~~~---~~d~vid~~G~~~~~~  229 (255)
                      +|++|++++|+|+.+ |++++++++++    +++++++++|+++++|+.+.   .+.+..+   ++|+||||+|+.... 
T Consensus       177 ~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid~~g~~~~~-  254 (357)
T 1zsy_A          177 NSGVGQAVIQIAAAL-GLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSST-  254 (357)
T ss_dssp             TSHHHHHHHHHHHHH-TCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEESSCHHHHH-
T ss_pred             cCHHHHHHHHHHHHc-CCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEECCCcHHHH-
Confidence            899999999999996 99988887543    35678899999999987432   2333222   599999999977653 


Q ss_pred             eeeeccccCCceEEEEeeccC
Q 025278          230 VYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       230 ~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .++++++ ++|+++.+|...+
T Consensus       255 ~~~~~l~-~~G~iv~~G~~~~  274 (357)
T 1zsy_A          255 ELLRQLA-RGGTMVTYGGMAK  274 (357)
T ss_dssp             HHHTTSC-TTCEEEECCCCTT
T ss_pred             HHHHhhC-CCCEEEEEecCCC
Confidence            4677777 7899999986543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=7.5e-45  Score=316.13  Aligned_cols=241  Identities=25%  Similarity=0.314  Sum_probs=207.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++++++.   ++++ +.|.|+|+++||+|||.+++||++|++++.|.++  ...+|.++|||++|+|+++|++++
T Consensus         7 mkA~~~~~~~~~---l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~P~v~GhE~~G~V~~vG~~V~   80 (373)
T 2fzw_A            7 CKAAVAWEAGKP---LSIE-EIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADP--EGCFPVILGHLGAGIVESVGEGVT   80 (373)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCT--TCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             eEEEEEecCCCC---cEEE-EeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCC--CCCCCccccccccEEEEEECCCCC
Confidence            899999998854   5888 8999999999999999999999999999998764  246799999999999999999999


Q ss_pred             CCCCCCEEEeccCccc--------------cC-------CC------------------CCCcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINEKA--------------LD-------HP------------------KRNGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~--------------~~-------~~------------------~~~g~~~~~~~~~~~~~~~lp  121 (255)
                      +|++||||+..+...+              ..       +.                  ...|+|+||+++|.+.++++|
T Consensus        81 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (373)
T 2fzw_A           81 KLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (373)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhheEECC
Confidence            9999999987642110              00       10                  125899999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCE
Q 025278          122 KNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADL  199 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~  199 (255)
                      +++++++++.+++++.|||+++ +..++++|++|||+| +|++|++++|+|+.+ |+ +|++++++++|+++++++|+++
T Consensus       161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~  238 (373)
T 2fzw_A          161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGATE  238 (373)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHHTCSE
T ss_pred             CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCce
Confidence            9999999999999999999998 578999999999999 699999999999996 87 7999999999999999999999


Q ss_pred             EEcCCC--ccccc----c-CCCccEEEECCCCccceeeeeeccccCC-ceEEEEeeccC
Q 025278          200 AIDYTK--ENIED----L-PEKFDVVFDAVGKMCISIVYQKCDKFQE-KSLINFGLFRQ  250 (255)
Q Consensus       200 v~~~~~--~~~~~----~-~~~~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~~G~~~~  250 (255)
                      ++|+.+  .++.+    . .+++|+|||++|.......++++++ ++ |+++.+|....
T Consensus       239 vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~-~~~G~iv~~G~~~~  296 (373)
T 2fzw_A          239 CINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH-KGWGVSVVVGVAAS  296 (373)
T ss_dssp             EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBC-TTTCEEEECSCCCT
T ss_pred             EeccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhc-cCCcEEEEEecCCC
Confidence            998864  33322    1 2379999999998777777788888 78 99999998653

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=3e-45  Score=315.83  Aligned_cols=242  Identities=24%  Similarity=0.311  Sum_probs=205.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcC-CCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLG-AFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g-~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++++++..   ++++ +.|.|+|+++||+||+.+++||++|++.++| .++....++|.++|||++|+|+++|+++
T Consensus         5 mka~~~~~~g~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v   80 (348)
T 2d8a_A            5 MVAIMKTKPGYG---AELV-EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGV   80 (348)
T ss_dssp             EEEEEECSSSSS---CEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTC
T ss_pred             ceEEEEECCCCC---EEEE-ECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCC
Confidence            899999998842   5888 8999999999999999999999999999998 4321123578999999999999999999


Q ss_pred             CCCCCCCEEEeccCccc------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           80 KKFKVGDEVYGDINEKA------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      ++|++||||+..+...+                  ..+...+|+|+||+++|.+.++++|+++++++|+.+. ++.|||+
T Consensus        81 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~  159 (348)
T 2d8a_A           81 EGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLGNAVD  159 (348)
T ss_dssp             CSCCTTCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH-HHHHHHH
T ss_pred             CcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh-HHHHHHH
Confidence            99999999987642111                  0122357999999999999999999999999998774 7779999


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~  214 (255)
                      ++++.++ +|++|||+|+ |++|++++|+|+.+ |+ +|++++++++|+++++++|+++++|+++.++.+.      .++
T Consensus       160 ~l~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g  236 (348)
T 2d8a_A          160 TVLAGPI-SGKSVLITGA-GPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNG  236 (348)
T ss_dssp             HHTTSCC-TTCCEEEECC-SHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSC
T ss_pred             HHHhcCC-CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCC
Confidence            9988888 9999999996 99999999999996 88 9999999999999999999999999877654331      237


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      +|+|||++|.......+.++++ ++|+++.+|...++
T Consensus       237 ~D~vid~~g~~~~~~~~~~~l~-~~G~iv~~g~~~~~  272 (348)
T 2d8a_A          237 VDVFLEFSGAPKALEQGLQAVT-PAGRVSLLGLYPGK  272 (348)
T ss_dssp             EEEEEECSCCHHHHHHHHHHEE-EEEEEEECCCCSSC
T ss_pred             CCEEEECCCCHHHHHHHHHHHh-cCCEEEEEccCCCC
Confidence            9999999998766677777777 78999999987653

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=7.9e-45  Score=316.12  Aligned_cols=240  Identities=24%  Similarity=0.363  Sum_probs=206.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++++++.   ++++ +.|.|+|+++||+|||.+++||++|++++.|.++.   .+|.++|||++|+|+++|++++
T Consensus         9 mkA~~~~~~g~~---l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~P~v~GhE~~G~V~~vG~~v~   81 (374)
T 2jhf_A            9 CKAAVLWEEKKP---FSIE-EVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT---PLPVIAGHEAAGIVESIGEGVT   81 (374)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC---CSSBCCCCSEEEEEEEECTTCC
T ss_pred             EEEEEEecCCCc---eEEE-EccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC---CCCcccCcCceEEEEEECCCCC
Confidence            899999998854   5888 89999999999999999999999999999987642   3799999999999999999999


Q ss_pred             CCCCCCEEEeccCccc--------------cC-------CC------------------CCCcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINEKA--------------LD-------HP------------------KRNGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~--------------~~-------~~------------------~~~g~~~~~~~~~~~~~~~lp  121 (255)
                      +|++||||+..+...+              ..       +.                  ...|+|+||+++|.+.++++|
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  161 (374)
T 2jhf_A           82 TVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKID  161 (374)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeEECC
Confidence            9999999987642110              00       10                  124899999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCE
Q 025278          122 KNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADL  199 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~  199 (255)
                      +++++++|+.+++++.|||+++ +..++++|++|||+| +|++|++++|+|+++ |+ +|++++++++|+++++++|+++
T Consensus       162 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~  239 (374)
T 2jhf_A          162 AASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGATE  239 (374)
T ss_dssp             TTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCce
Confidence            9999999999999999999998 578999999999999 799999999999996 87 7999999999999999999999


Q ss_pred             EEcCCC--ccccc----c-CCCccEEEECCCCccceeeeeeccccCC-ceEEEEeeccC
Q 025278          200 AIDYTK--ENIED----L-PEKFDVVFDAVGKMCISIVYQKCDKFQE-KSLINFGLFRQ  250 (255)
Q Consensus       200 v~~~~~--~~~~~----~-~~~~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~~G~~~~  250 (255)
                      ++|+.+  .++.+    . .+++|+|||++|.......++++++ ++ |+++.+|....
T Consensus       240 vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~-~~~G~iv~~G~~~~  297 (374)
T 2jhf_A          240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQ-EAYGVSVIVGVPPD  297 (374)
T ss_dssp             EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBC-TTTCEEEECSCCCT
T ss_pred             EecccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhh-cCCcEEEEeccCCC
Confidence            998864  33322    1 2379999999998777777788887 78 99999998654

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=7.7e-45  Score=315.79  Aligned_cols=237  Identities=27%  Similarity=0.352  Sum_probs=201.4

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++++++.    +++++.|.|+|+++||+||+.+++||++|++++.+.     ..+|.++|||++|+|+++|++++
T Consensus        12 mkA~v~~~~~~l----~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-----~~~p~v~G~e~~G~V~~vG~~v~   82 (371)
T 3gqv_A           12 QTALTVNDHDEV----TVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF-----ATPWAFLGTDYAGTVVAVGSDVT   82 (371)
T ss_dssp             EEEEEECTTSCE----EEEEEECCCCCCTTSEEEEEEEEECCGGGGC----------CCTTSCCCSEEEEEEEEECTTCC
T ss_pred             ceeEEEcCCCce----EEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC-----CCCCccCccccEEEEEEeCCCCC
Confidence            899999988764    776468999999999999999999999999988763     34689999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-Hh-ccc----------
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ER-SAF----------  148 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~-~~~----------  148 (255)
                      +|++||||++.+..+. .+...+|+|+||+++|.+.++++|+++++++|+.+++++.|||+++ +. .++          
T Consensus        83 ~~~~GdrV~~~~~~~~-~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~  161 (371)
T 3gqv_A           83 HIQVGDRVYGAQNEMC-PRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPT  161 (371)
T ss_dssp             SCCTTCEEEEECCTTC-TTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCC
T ss_pred             CCCCCCEEEEeccCCC-CCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccc
Confidence            9999999998764332 2334579999999999999999999999999999999999999999 44 442          


Q ss_pred             -CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc-----CCCccEEEECC
Q 025278          149 -SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL-----PEKFDVVFDAV  222 (255)
Q Consensus       149 -~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-----~~~~d~vid~~  222 (255)
                       ++|++|||+|++|++|++++|+|+.+ |++|+++. +++|+++++++|+++++|+.+.++.+.     .+++|++|||+
T Consensus       162 ~~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~  239 (371)
T 3gqv_A          162 HSKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCI  239 (371)
T ss_dssp             CSSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESS
T ss_pred             cCCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECC
Confidence             89999999998899999999999995 99998886 789999999999999999988765432     24699999999


Q ss_pred             CCccceeeeeeccccCCceEEEEeecc
Q 025278          223 GKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       223 G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      |+......++++++.++|+++.+|.+.
T Consensus       240 g~~~~~~~~~~~l~~~~G~iv~~g~~~  266 (371)
T 3gqv_A          240 TNVESTTFCFAAIGRAGGHYVSLNPFP  266 (371)
T ss_dssp             CSHHHHHHHHHHSCTTCEEEEESSCCC
T ss_pred             CchHHHHHHHHHhhcCCCEEEEEecCc
Confidence            998777777777732689999999655

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.8e-45  Score=313.18  Aligned_cols=234  Identities=29%  Similarity=0.448  Sum_probs=207.2

Q ss_pred             CeEEEEcccCCCccceEE-eecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKF-ETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~-~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++++++.+ ..+++ + +.|.|+|+++||+|||.+++||++|++++.|.++. ...+|.++|||++|+|+++|+++
T Consensus        30 Mka~~~~~~g~~-~~l~~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~P~v~G~E~~G~V~~vG~~v  106 (351)
T 1yb5_A           30 MRAVRVFEFGGP-EVLKLRS-DIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR-KPLLPYTPGSDVAGVIEAVGDNA  106 (351)
T ss_dssp             EEEEEESSCSSG-GGEEEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC-CCCSSBCCCSCEEEEEEEECTTC
T ss_pred             EEEEEEccCCCc-ceeEEee-ecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCcCCceeEEEEEEECCCC
Confidence            899999998877 67888 7 89999999999999999999999999999987642 24578999999999999999999


Q ss_pred             CCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEc
Q 025278           80 KKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLG  158 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~g  158 (255)
                      ++|++||||++...        ..|+|+||+++|.+.++++|++++++++|.+++++.|||+++. ..++++|++|+|+|
T Consensus       107 ~~~~vGdrV~~~~~--------~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~G  178 (351)
T 1yb5_A          107 SAFKKGDRVFTSST--------ISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHG  178 (351)
T ss_dssp             TTCCTTCEEEESCC--------SSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEET
T ss_pred             CCCCCCCEEEEeCC--------CCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEEC
Confidence            99999999998641        3599999999999999999999999999999999999999995 78999999999999


Q ss_pred             CCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeee
Q 025278          159 GAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQ  232 (255)
Q Consensus       159 a~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~  232 (255)
                      ++|++|++++|+|+.. |++|+++++++++++.++++|++.++|+.+.++.+.      .+++|++|||+|... ...++
T Consensus       179 asggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~~~-~~~~~  256 (351)
T 1yb5_A          179 ASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDL  256 (351)
T ss_dssp             CSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHH
T ss_pred             CCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCChHH-HHHHH
Confidence            8899999999999995 899999999999999999999999999876654321      237999999999753 45557


Q ss_pred             eccccCCceEEEEeec
Q 025278          233 KCDKFQEKSLINFGLF  248 (255)
Q Consensus       233 ~~~~~~~G~~v~~G~~  248 (255)
                      ++++ ++|+++.+|..
T Consensus       257 ~~l~-~~G~iv~~g~~  271 (351)
T 1yb5_A          257 SLLS-HGGRVIVVGSR  271 (351)
T ss_dssp             HHEE-EEEEEEECCCC
T ss_pred             Hhcc-CCCEEEEEecC
Confidence            7777 78999999964

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9.9e-45  Score=313.09  Aligned_cols=241  Identities=24%  Similarity=0.325  Sum_probs=203.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHc-CCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRML-GAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~-g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++++++.    ++++ +.|.|+|+++||+|||.+++||++|++.+. +.++....++|.++|||++|+|+++|+++
T Consensus         5 mka~~~~~~~~----l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v   79 (352)
T 1e3j_A            5 NLSAVLYKQND----LRLE-QRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNV   79 (352)
T ss_dssp             CEEEEEEETTE----EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTC
T ss_pred             CEEEEEEcCCc----EEEE-EecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCC
Confidence            89999998764    5888 899999999999999999999999999887 43322224578999999999999999999


Q ss_pred             CCCCCCCEEEeccCccc------------------cCCC-CCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHH
Q 025278           80 KKFKVGDEVYGDINEKA------------------LDHP-KRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY  140 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~------------------~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~  140 (255)
                      ++|++||||+..+...+                  ..+. ...|+|+||+++|.+.++++|+++++++|+.+ .++.|||
T Consensus        80 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~  158 (352)
T 1e3j_A           80 KHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-EPLSVGV  158 (352)
T ss_dssp             CSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-HHHHHHH
T ss_pred             CCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-chHHHHH
Confidence            99999999987532110                  0111 23699999999999999999999999998865 5777899


Q ss_pred             HHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCC-cccccc--------
Q 025278          141 EGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK-ENIEDL--------  211 (255)
Q Consensus       141 ~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~--------  211 (255)
                      ++++..++++|++|||+| +|++|++++|+|+.+ |++|++++++++|+++++++|+++++|+++ .++.+.        
T Consensus       159 ~al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~  236 (352)
T 1e3j_A          159 HACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSA  236 (352)
T ss_dssp             HHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccc
Confidence            999888999999999999 599999999999996 899999999999999999999999999874 443221        


Q ss_pred             -CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 -PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 -~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                       .+++|++||++|.......++++++ ++|+++.+|...+
T Consensus       237 ~g~g~D~vid~~g~~~~~~~~~~~l~-~~G~iv~~G~~~~  275 (352)
T 1e3j_A          237 IGDLPNVTIDCSGNEKCITIGINITR-TGGTLMLVGMGSQ  275 (352)
T ss_dssp             SSSCCSEEEECSCCHHHHHHHHHHSC-TTCEEEECSCCSS
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHHh-cCCEEEEEecCCC
Confidence             2579999999998766677788887 7999999998554

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=1.1e-44  Score=315.46  Aligned_cols=239  Identities=24%  Similarity=0.298  Sum_probs=205.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++..   ++++ +.|.|+|+++||+|||.+++||++|+++++|. +  ..++|.++|||++|+|+++|++++
T Consensus         9 mka~~~~~~g~~---l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~--~~~~P~v~GhE~~G~V~~vG~~v~   81 (376)
T 1e3i_A            9 CKAAIAWKTGSP---LCIE-EIEVSPPKACEVRIQVIATCVCPTDINATDPK-K--KALFPVVLGHECAGIVESVGPGVT   81 (376)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-S--CCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             eeEEEEecCCCC---eEEE-EeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-C--CCCCCcccCccccEEEEEECCCCc
Confidence            899999998854   5888 89999999999999999999999999999885 3  246799999999999999999999


Q ss_pred             CCCCCCEEEeccCccc--------------cC-----------CC------------------CCCcceeeEEeeeCCce
Q 025278           81 KFKVGDEVYGDINEKA--------------LD-----------HP------------------KRNGSLAEYTAVEENLL  117 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~--------------~~-----------~~------------------~~~g~~~~~~~~~~~~~  117 (255)
                      ++++||||+..+...+              ..           +.                  ...|+|+||+++|.+.+
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  161 (376)
T 1e3i_A           82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (376)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             cCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEeccccE
Confidence            9999999997642100              00           10                  02489999999999999


Q ss_pred             EeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHc
Q 025278          118 ALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSL  195 (255)
Q Consensus       118 ~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~  195 (255)
                      +++|+++++++++.+++++.|||+++ +..++++|++|||+| +|++|++++|+|+++ |+ +|++++++++|+++++++
T Consensus       162 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l  239 (376)
T 1e3i_A          162 ARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKAL  239 (376)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT
T ss_pred             EECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh
Confidence            99999999999999999999999998 578999999999999 699999999999996 87 799999999999999999


Q ss_pred             CCCEEEcCCC--cccccc-----CCCccEEEECCCCccceeeeeeccccCC-ceEEEEeecc
Q 025278          196 GADLAIDYTK--ENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQE-KSLINFGLFR  249 (255)
Q Consensus       196 g~~~v~~~~~--~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~~G~~~  249 (255)
                      |+++++|+.+  .++.+.     .+++|+|||++|.......++++++ ++ |+++.+|..+
T Consensus       240 Ga~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~-~~~G~iv~~G~~~  300 (376)
T 1e3i_A          240 GATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV-LGWGSCTVVGAKV  300 (376)
T ss_dssp             TCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBC-TTTCEEEECCCSS
T ss_pred             CCcEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhh-cCCCEEEEECCCC
Confidence            9999999864  333221     2389999999998777777788888 78 9999999843

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=3e-44  Score=312.53  Aligned_cols=238  Identities=35%  Similarity=0.538  Sum_probs=205.9

Q ss_pred             CeEEEEcccCCCccceEE-eecccCCCC-CCCeEEEEEeEeecChHhHHHHcCCCCC-------------CCCCCCcccc
Q 025278            1 MKAWVYKEYGNSQSVLKF-ETNVEVPSL-REDQVLIKVVAAALNPIDFKRMLGAFSA-------------TDSPLPTIPG   65 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~-~~~~~~p~~-~~~eV~V~v~~~~i~~~D~~~~~g~~~~-------------~~~~~p~~~G   65 (255)
                      |||+++++++.+ ..+++ + +.|.|+| +++||+|||.+++||++|+++++|..+.             ...++|.++|
T Consensus        22 mka~~~~~~g~~-~~l~~~~-~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v~G   99 (375)
T 2vn8_A           22 SMAWVIDKYGKN-EVLRFTQ-NMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLG   99 (375)
T ss_dssp             EEEEEBSSCCSG-GGCEEEE-EECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBCCC
T ss_pred             ceeEEeccCCCc-cceEEec-cccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCcccc
Confidence            899999999876 66888 7 8899985 9999999999999999999999885321             1123789999


Q ss_pred             cceEEEEEEeCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-
Q 025278           66 YDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-  144 (255)
Q Consensus        66 ~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-  144 (255)
                      ||++|+|+++|+++++|++||||++...      ....|+|+||+++|.+.++++|+++++++|+.++++++|||+++. 
T Consensus       100 ~E~~G~V~~vG~~V~~~~vGDrV~~~~~------~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~  173 (375)
T 2vn8_A          100 RDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINK  173 (375)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEEECC------TTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTT
T ss_pred             eeeeEEEEEeCCCCCCCCCCCEEEEecC------CCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999998652      123699999999999999999999999999999999999999994 


Q ss_pred             hcc----cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc---CCCccE
Q 025278          145 RSA----FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL---PEKFDV  217 (255)
Q Consensus       145 ~~~----~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~---~~~~d~  217 (255)
                      ..+    +++|++|+|+||+|++|++++|+|+.+ |++|++++ +++|+++++++|++.++|+.+.++.+.   ..++|+
T Consensus       174 ~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~  251 (375)
T 2vn8_A          174 VGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDF  251 (375)
T ss_dssp             TTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSE
T ss_pred             hcccccccCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCE
Confidence            678    899999999999999999999999996 89998887 678999999999999999877654431   258999


Q ss_pred             EEECCCCc-cceeeeeeccccCCceEEEEeecc
Q 025278          218 VFDAVGKM-CISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       218 vid~~G~~-~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +|||+|+. .....++++++ ++|+++.+|...
T Consensus       252 vid~~g~~~~~~~~~~~~l~-~~G~iv~~g~~~  283 (375)
T 2vn8_A          252 ILDNVGGSTETWAPDFLKKW-SGATYVTLVTPF  283 (375)
T ss_dssp             EEESSCTTHHHHGGGGBCSS-SCCEEEESCCSH
T ss_pred             EEECCCChhhhhHHHHHhhc-CCcEEEEeCCCc
Confidence            99999987 44456677777 789999999754

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=2.5e-44  Score=311.11  Aligned_cols=243  Identities=26%  Similarity=0.357  Sum_probs=204.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++++.  +.. ..++++ +.|.|+|+++||+|||.+++||++|++.++|.++  ...+|.++|||++|+|+++|++++
T Consensus        10 ~~a~~~~--~~~-~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~P~v~GhE~~G~V~~vG~~v~   83 (357)
T 2cf5_A           10 TTGWAAR--DPS-GILSPY-TYTLRETGPEDVNIRIICCGICHTDLHQTKNDLG--MSNYPMVPGHEVVGEVVEVGSDVS   83 (357)
T ss_dssp             EEEEEEC--STT-CCEEEE-EEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTT--CCCSSBCCCCEEEEEEEEECSSCC
T ss_pred             eEEEEEc--cCC-CCcEEE-EecCCCCCCCEEEEEEEEEeecchhhhhhcCCCC--CCCCCeecCcceeEEEEEECCCCC
Confidence            4455554  433 457888 8999999999999999999999999999998764  246799999999999999999999


Q ss_pred             CCCCCCEEEecc-----Ccccc---------------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccch
Q 025278           81 KFKVGDEVYGDI-----NEKAL---------------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPL  134 (255)
Q Consensus        81 ~~~~Gd~V~~~~-----~~~~~---------------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~  134 (255)
                      +|++||||+..+     +.+..                     .+....|+|+||+++|.+.++++|+++++++++.+++
T Consensus        84 ~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~  163 (357)
T 2cf5_A           84 KFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLC  163 (357)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGT
T ss_pred             CCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhhhhhh
Confidence            999999998532     11000                     0122579999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcccC-CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCcc-cccc
Q 025278          135 ATETAYEGLERSAFS-AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKEN-IEDL  211 (255)
Q Consensus       135 ~~~ta~~~l~~~~~~-~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~-~~~~  211 (255)
                      ++.|||+++++.+++ +|++|+|+| +|++|++++|+|+.+ |++|++++++++|++.++ ++|+++++++.+.+ ..+.
T Consensus       164 ~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~  241 (357)
T 2cf5_A          164 AGVTVYSPLSHFGLKQPGLRGGILG-LGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSEL  241 (357)
T ss_dssp             HHHHHHHHHHHTSTTSTTCEEEEEC-CSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHS
T ss_pred             hHHHHHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHh
Confidence            999999999888888 999999999 699999999999996 899999999999999988 99999999987533 2333


Q ss_pred             CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCC
Q 025278          212 PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEV  252 (255)
Q Consensus       212 ~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~  252 (255)
                      .+++|+|||++|.......++++++ ++|+++.+|...++.
T Consensus       242 ~~g~D~vid~~g~~~~~~~~~~~l~-~~G~iv~~G~~~~~~  281 (357)
T 2cf5_A          242 ADSLDYVIDTVPVHHALEPYLSLLK-LDGKLILMGVINNPL  281 (357)
T ss_dssp             TTTEEEEEECCCSCCCSHHHHTTEE-EEEEEEECSCCSSCC
T ss_pred             cCCCCEEEECCCChHHHHHHHHHhc-cCCEEEEeCCCCCCc
Confidence            4689999999998766677778887 789999999876543

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=1.2e-45  Score=318.52  Aligned_cols=239  Identities=23%  Similarity=0.286  Sum_probs=204.8

Q ss_pred             CeEEEEc--ccCCCccceEEeecc---------cCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceE
Q 025278            1 MKAWVYK--EYGNSQSVLKFETNV---------EVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVA   69 (255)
Q Consensus         1 mka~v~~--~~~~~~~~l~~~~~~---------~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~   69 (255)
                      |||++++  +++.....++++ +.         |.|+|++|||+|||.+++||++|++.++|.++. ..++|.++|||++
T Consensus        11 mka~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~p~v~G~E~~   88 (349)
T 3pi7_A           11 MKALLLVGDGYTKTPSGSALE-AMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQ-PRVKGRPAGFEGV   88 (349)
T ss_dssp             EEEEEECSCBSCSSCCCSCCC-CSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSS-CBCTTSBCCSEEE
T ss_pred             heEEEEEccccCCCcccceEE-EeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCC-CCCCCCCccceEE
Confidence            8999999  442222456888 78         999999999999999999999999999997652 3468999999999


Q ss_pred             EEEEEeCCCC-CCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhccc
Q 025278           70 GVVEKVGSQV-KKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAF  148 (255)
Q Consensus        70 G~V~~~G~~v-~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~  148 (255)
                      |+|+++|+++ ++|++||||++...      ...+|+|+||+++|.+.++++|+++++++|+.+++..+|||+++++.+ 
T Consensus        89 G~V~~vG~~v~~~~~vGdrV~~~~g------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~-  161 (349)
T 3pi7_A           89 GTIVAGGDEPYAKSLVGKRVAFATG------LSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVK-  161 (349)
T ss_dssp             EEEEEECSSHHHHHHTTCEEEEECT------TSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHHHHHH-
T ss_pred             EEEEEECCCccCCCCCCCEEEEecc------CCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHHHHHh-
Confidence            9999999999 99999999998642      235799999999999999999999999999999999999998777766 


Q ss_pred             CCC-CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEEC
Q 025278          149 SAG-KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDA  221 (255)
Q Consensus       149 ~~g-~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~  221 (255)
                      ++| ++|+|+||+|++|++++|+|+++ |++|++++++++|+++++++|+++++|+++.++.+.      .+++|++|||
T Consensus       162 ~~g~~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~  240 (349)
T 3pi7_A          162 QEGEKAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDA  240 (349)
T ss_dssp             HHCCSEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEES
T ss_pred             hCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEEC
Confidence            666 79999988999999999999996 899999999999999999999999999987665442      1379999999


Q ss_pred             CCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          222 VGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       222 ~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      +|+... ..++.+++ ++|+++.+|...+.
T Consensus       241 ~g~~~~-~~~~~~l~-~~G~iv~~G~~~~~  268 (349)
T 3pi7_A          241 VTGPLA-SAIFNAMP-KRARWIIYGRLDPD  268 (349)
T ss_dssp             SCHHHH-HHHHHHSC-TTCEEEECCCSCCS
T ss_pred             CCChhH-HHHHhhhc-CCCEEEEEeccCCC
Confidence            997764 55677777 79999999976653

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.4e-44  Score=314.60  Aligned_cols=240  Identities=20%  Similarity=0.277  Sum_probs=206.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHH-HHcCCCCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFK-RMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~-~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++++++++   ++++ +.|.|+|+++||+|||.+++||++|++ .++|.++   ..+|.++|||++|+|+++|+++
T Consensus         9 mka~~~~~~~~~---l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~---~~~P~v~GhE~~G~V~~vG~~V   81 (374)
T 1cdo_A            9 CKAAVAWEANKP---LVIE-EIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK---DGFPVVLGHEGAGIVESVGPGV   81 (374)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT---TSCSEECCCCEEEEEEEECTTC
T ss_pred             eEEEEEecCCCC---eEEE-EeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC---CCCCcccCccceEEEEEECCCC
Confidence            899999998854   5888 899999999999999999999999999 8888754   4679999999999999999999


Q ss_pred             CCCCCCCEEEeccCccc--------------cC-------CC------------------CCCcceeeEEeeeCCceEeC
Q 025278           80 KKFKVGDEVYGDINEKA--------------LD-------HP------------------KRNGSLAEYTAVEENLLALK  120 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~--------------~~-------~~------------------~~~g~~~~~~~~~~~~~~~l  120 (255)
                      ++|++||||+..+...+              ..       +.                  ...|+|+||+++|.+.++++
T Consensus        82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~  161 (374)
T 1cdo_A           82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKI  161 (374)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEEC
T ss_pred             ccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhheEEC
Confidence            99999999987642110              00       10                  02489999999999999999


Q ss_pred             CCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCC
Q 025278          121 PKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGAD  198 (255)
Q Consensus       121 p~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~  198 (255)
                      |+++++++|+.+++++.|||+++ +..++++|++|||+| +|++|++++|+|+++ |+ +|++++++++|+++++++|++
T Consensus       162 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~  239 (374)
T 1cdo_A          162 DPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGAT  239 (374)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCC
T ss_pred             CCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhCCc
Confidence            99999999999999999999998 578999999999999 699999999999996 87 799999999999999999999


Q ss_pred             EEEcCCC--cccccc-----CCCccEEEECCCCccceeeeeeccccCC-ceEEEEeeccC
Q 025278          199 LAIDYTK--ENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQE-KSLINFGLFRQ  250 (255)
Q Consensus       199 ~v~~~~~--~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~-G~~v~~G~~~~  250 (255)
                      +++|+.+  .++.+.     .+++|+|||++|.......++++++ ++ |+++.+|...+
T Consensus       240 ~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~-~~~G~iv~~G~~~~  298 (374)
T 1cdo_A          240 DFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCL-KGWGVSVLVGWTDL  298 (374)
T ss_dssp             EEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBC-TTTCEEEECSCCSS
T ss_pred             eEEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhh-cCCcEEEEEcCCCC
Confidence            9998864  333221     2379999999998777777788888 78 99999998764

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-44  Score=311.63  Aligned_cols=243  Identities=23%  Similarity=0.361  Sum_probs=208.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++..   ++++ +.|.|+|+++||+|||.+++||++|++.++|.++. ...+|.++|||++|+|+++|++++
T Consensus         6 mka~~~~~~g~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~E~~G~V~~vG~~v~   80 (347)
T 2hcy_A            6 QKGVIFYESHGK---LEYK-DIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPL-PVKLPLVGGHEGAGVVVGMGENVK   80 (347)
T ss_dssp             EEEEEESSTTCC---CEEE-EEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSEECCCEEEEEEEEECTTCC
T ss_pred             cEEEEEeCCCCC---CEEE-EeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCC-CCCCCcccCccceEEEEEECCCCC
Confidence            899999998844   5888 89999999999999999999999999999987642 246799999999999999999999


Q ss_pred             CCCCCCEEEecc-----Cccc--------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDI-----NEKA--------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~-----~~~~--------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      +|++||||+..+     +.+.              ..+...+|+|+||+++|.+.++++|+++++++++.++++++|||+
T Consensus        81 ~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  160 (347)
T 2hcy_A           81 GWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYK  160 (347)
T ss_dssp             SCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHHHH
T ss_pred             CCcCCCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHHHH
Confidence            999999998642     1110              012234799999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCC-Ccccccc-----CCCc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYT-KENIEDL-----PEKF  215 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~-----~~~~  215 (255)
                      ++++.++++|++|||+|++|++|++++|+++.. |++|+++++++++++.++++|++.++|+. ++++.+.     .+++
T Consensus       161 ~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~  239 (347)
T 2hcy_A          161 ALKSANLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGA  239 (347)
T ss_dssp             HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCE
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCC
Confidence            998889999999999998899999999999985 89999999999999999999999999876 3443321     1279


Q ss_pred             cEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          216 DVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       216 d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |++||++|.......+.++++ ++|+++.+|...+
T Consensus       240 D~vi~~~g~~~~~~~~~~~l~-~~G~iv~~g~~~~  273 (347)
T 2hcy_A          240 HGVINVSVSEAAIEASTRYVR-ANGTTVLVGMPAG  273 (347)
T ss_dssp             EEEEECSSCHHHHHHHTTSEE-EEEEEEECCCCTT
T ss_pred             CEEEECCCcHHHHHHHHHHHh-cCCEEEEEeCCCC
Confidence            999999998666677777777 7899999998763

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=9.1e-45  Score=313.75  Aligned_cols=241  Identities=24%  Similarity=0.331  Sum_probs=202.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCC-CCCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGA-FSATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~-~~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++++++.    ++++ +.|.|+|+++||+|||.++|||++|++.+++. .+....++|.++|||++|+|+++|+++
T Consensus         8 mka~~~~~~~~----l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V   82 (356)
T 1pl8_A            8 NLSLVVHGPGD----LRLE-NYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSV   82 (356)
T ss_dssp             CEEEEEEETTE----EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTC
T ss_pred             ceEEEEecCCc----EEEE-EccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCC
Confidence            99999998764    5888 89999999999999999999999999998743 211123568999999999999999999


Q ss_pred             CCCCCCCEEEeccCccc------------------cCCC-CCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHH
Q 025278           80 KKFKVGDEVYGDINEKA------------------LDHP-KRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY  140 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~------------------~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~  140 (255)
                      ++|++||||+..+...+                  ..+. ..+|+|+||+++|.+.++++|+++++++|+.+ .++.|||
T Consensus        83 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~~~ta~  161 (356)
T 1pl8_A           83 KHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-EPLSVGI  161 (356)
T ss_dssp             CSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-HHHHHHH
T ss_pred             CCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-chHHHHH
Confidence            99999999987532110                  0111 23699999999999999999999999998865 5778999


Q ss_pred             HHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCC---Ccccccc-----
Q 025278          141 EGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYT---KENIEDL-----  211 (255)
Q Consensus       141 ~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~---~~~~~~~-----  211 (255)
                      ++++..++++|++|||+| +|++|++++|+|+.+ |+ +|++++++++|+++++++|++++++++   +.++.+.     
T Consensus       162 ~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          162 HACRRGGVTLGHKVLVCG-AGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             HHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHh
Confidence            999889999999999999 699999999999996 88 899999999999999999999999987   2332211     


Q ss_pred             CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 ~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+++|+|||++|.......++++++ ++|+++.+|....
T Consensus       240 ~~g~D~vid~~g~~~~~~~~~~~l~-~~G~iv~~G~~~~  277 (356)
T 1pl8_A          240 GCKPEVTIECTGAEASIQAGIYATR-SGGTLVLVGLGSE  277 (356)
T ss_dssp             TSCCSEEEECSCCHHHHHHHHHHSC-TTCEEEECSCCCS
T ss_pred             CCCCCEEEECCCChHHHHHHHHHhc-CCCEEEEEecCCC
Confidence            2589999999998776677788888 8999999997543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=4.4e-45  Score=314.36  Aligned_cols=242  Identities=28%  Similarity=0.359  Sum_probs=201.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++..   ++++ +.|.|+|+++||+|||.+++||++|++.++|.++.....+|.++|||++|+|+++|++ +
T Consensus         4 mka~~~~~~g~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~   78 (344)
T 2h6e_A            4 SKAALLKKFSEP---LSIE-DVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-A   78 (344)
T ss_dssp             EEBCEECSCCC---------EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-C
T ss_pred             eEEEEEecCCCC---CeEE-EeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-C
Confidence            899999998754   5888 8999999999999999999999999999998764213467999999999999999999 9


Q ss_pred             CCCCCCEEEeccCccc------------------cCCCCCCcceeeEEeee-CCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDINEKA------------------LDHPKRNGSLAEYTAVE-ENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~------------------~~~~~~~g~~~~~~~~~-~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      +|++||||+......+                  ..+....|+|+||+++| .+.++++ +++++++++.+++++.|||+
T Consensus        79 ~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~  157 (344)
T 2h6e_A           79 KVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMG  157 (344)
T ss_dssp             CCCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHH
T ss_pred             CCCCCCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHH
Confidence            9999999976532110                  11223479999999999 9999999 99999999999999999999


Q ss_pred             HHHhc-----ccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHHcCCCEEEcCCC-ccccc-c--
Q 025278          142 GLERS-----AFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRSLGADLAIDYTK-ENIED-L--  211 (255)
Q Consensus       142 ~l~~~-----~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~-~--  211 (255)
                      +++..     ++ +|++|||+|+ |++|++++|+|+.++ |++|++++++++|+++++++|+++++|+.+ .++.+ .  
T Consensus       158 al~~~~~~~~~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~  235 (344)
T 2h6e_A          158 AIRQALPFISKF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTD  235 (344)
T ss_dssp             HHHHHHHHHTTC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHT
T ss_pred             HHHhhhhcccCC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhc
Confidence            99766     88 9999999996 999999999999842 789999999999999999999999998765 33221 1  


Q ss_pred             CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          212 PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       212 ~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      .+++|+|||++|.......+.++++ ++|+++.+|...++
T Consensus       236 g~g~D~vid~~g~~~~~~~~~~~l~-~~G~iv~~g~~~~~  274 (344)
T 2h6e_A          236 GLGASIAIDLVGTEETTYNLGKLLA-QEGAIILVGMEGKR  274 (344)
T ss_dssp             TCCEEEEEESSCCHHHHHHHHHHEE-EEEEEEECCCCSSC
T ss_pred             CCCccEEEECCCChHHHHHHHHHhh-cCCEEEEeCCCCCC
Confidence            2379999999998866777778887 78999999987653

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=8e-45  Score=314.97  Aligned_cols=237  Identities=19%  Similarity=0.288  Sum_probs=202.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCC--CCeEEEEEeEeecChHhHHHHcCCCCCCCCCCC---------cccccceE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLR--EDQVLIKVVAAALNPIDFKRMLGAFSATDSPLP---------TIPGYDVA   69 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~--~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p---------~~~G~e~~   69 (255)
                      |||+++++++++.+.++++ +.|.|+|.  ++||+|||.+++||++|++.++|.++. ...+|         .++|||++
T Consensus         4 mka~~~~~~g~~~~~l~~~-~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~P~~~~~~~p~~i~G~E~~   81 (364)
T 1gu7_A            4 AQAVLYTQHGEPKDVLFTQ-SFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPS-KPAKTTGFGTTEPAAPCGNEGL   81 (364)
T ss_dssp             EEEEEESSCSCHHHHCEEE-EEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSC-CCCCBSTTCCSSCBEECCSCCE
T ss_pred             EEEEEeccCCCchheeEEe-eccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCC-CCCCCccccccCcccccCceeE
Confidence            8999999998642346888 78888877  999999999999999999999997652 23456         89999999


Q ss_pred             EEEEEeCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCC-----------CCCHHhhhccchhHHH
Q 025278           70 GVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPK-----------NLSFVEAASLPLATET  138 (255)
Q Consensus        70 G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~-----------~~~~~~aa~l~~~~~t  138 (255)
                      |+|+++|+++++|++||||+....        ..|+|+||+++|.+.++++|+           ++++++|+.++++++|
T Consensus        82 G~V~~vG~~v~~~~vGdrV~~~~~--------~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~t  153 (364)
T 1gu7_A           82 FEVIKVGSNVSSLEAGDWVIPSHV--------NFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLT  153 (364)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESSS--------CCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHH
T ss_pred             EEEEEeCCCCCcCCCCCEEEecCC--------CCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHH
Confidence            999999999999999999998642        369999999999999999998           8999999999999999


Q ss_pred             HHHHHHh-cccCCC-CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh----HHHHHHcCCCEEEcCCC---cccc
Q 025278          139 AYEGLER-SAFSAG-KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK----LDLLRSLGADLAIDYTK---ENIE  209 (255)
Q Consensus       139 a~~~l~~-~~~~~g-~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~----~~~~~~~g~~~v~~~~~---~~~~  209 (255)
                      ||+++.. .++++| ++|||+|++|++|++++|+|+.+ |++++++++++++    +++++++|+++++|+++   .++.
T Consensus       154 a~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~  232 (364)
T 1gu7_A          154 AYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFG  232 (364)
T ss_dssp             HHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGH
T ss_pred             HHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHH
Confidence            9999976 689999 99999998899999999999996 9999998876654    67789999999998864   3332


Q ss_pred             c----c----CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          210 D----L----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       210 ~----~----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +    .    .+++|+||||+|+.... .+.++++ ++|+++.+|...+
T Consensus       233 ~~i~~~t~~~~~g~Dvvid~~G~~~~~-~~~~~l~-~~G~~v~~g~~~~  279 (364)
T 1gu7_A          233 PTIKEWIKQSGGEAKLALNCVGGKSST-GIARKLN-NNGLMLTYGGMSF  279 (364)
T ss_dssp             HHHHHHHHHHTCCEEEEEESSCHHHHH-HHHHTSC-TTCEEEECCCCSS
T ss_pred             HHHHHHhhccCCCceEEEECCCchhHH-HHHHHhc-cCCEEEEecCCCC
Confidence            2    1    34899999999987765 5677787 7999999998654

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.2e-44  Score=312.85  Aligned_cols=238  Identities=20%  Similarity=0.291  Sum_probs=204.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++++++.   ++++ +.|.|+|+++||+|||.+++||++|++.++|.++  ...+|.++|||++|+|+++| +++
T Consensus        18 mka~~~~~~g~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~--~~~~P~v~GhE~~G~V~~vG-~V~   90 (380)
T 1vj0_A           18 AHAMVLEKFNQP---LVYK-EFEISDIPRGSILVEILSAGVCGSDVHMFRGEDP--RVPLPIILGHEGAGRVVEVN-GEK   90 (380)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCT--TCCSSBCCCCEEEEEEEEES-SCC
T ss_pred             eEEEEEecCCCC---eEEE-EccCCCCCCCEEEEEEeEEeecccchHHhcCCCC--CCCCCcccCcCcEEEEEEeC-Ccc
Confidence            899999999832   5888 8999999999999999999999999999998764  24678999999999999999 999


Q ss_pred             ------CCCCCCEEEeccCccc-------------------cCCC--------CCCcceeeEEee-eCCceEeCCCCCCH
Q 025278           81 ------KFKVGDEVYGDINEKA-------------------LDHP--------KRNGSLAEYTAV-EENLLALKPKNLSF  126 (255)
Q Consensus        81 ------~~~~Gd~V~~~~~~~~-------------------~~~~--------~~~g~~~~~~~~-~~~~~~~lp~~~~~  126 (255)
                            +|++||||+..+...+                   ..+.        ...|+|+||+++ |.+.++++|+++++
T Consensus        91 ~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~l~~  170 (380)
T 1vj0_A           91 RDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDL  170 (380)
T ss_dssp             BCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTSCH
T ss_pred             ccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEEECCCCCCh
Confidence                  9999999998531110                   0121        347999999999 99999999999999


Q ss_pred             H-hhhccchhHHHHHHHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          127 V-EAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       127 ~-~aa~l~~~~~ta~~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      + +|++++ ++.|||++++..+ +++|++|||+| +|++|++++|+|+.+ | .+|++++++++|+++++++|+++++++
T Consensus       171 ~~~Aa~~~-~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~  247 (380)
T 1vj0_A          171 DVLAMAMC-SGATAYHAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEIGADLTLNR  247 (380)
T ss_dssp             HHHHHHTT-HHHHHHHHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             HHhHhhhc-HHHHHHHHHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHHHcCCcEEEec
Confidence            8 666666 8999999998888 99999999999 899999999999996 8 699999999999999999999999998


Q ss_pred             C---Cccccc----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          204 T---KENIED----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       204 ~---~~~~~~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .   +.++.+    .  ..++|+|||++|.......++++++ ++|+++.+|...
T Consensus       248 ~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~-~~G~iv~~G~~~  301 (380)
T 1vj0_A          248 RETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR-RGGFYSVAGVAV  301 (380)
T ss_dssp             TTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEE-EEEEEEECCCCS
T ss_pred             cccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHh-cCCEEEEEecCC
Confidence            7   444322    1  2379999999998777777788887 789999999876

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=8.9e-44  Score=306.55  Aligned_cols=243  Identities=29%  Similarity=0.415  Sum_probs=208.8

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC------CCCCCCcccccceEEEEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA------TDSPLPTIPGYDVAGVVEK   74 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~------~~~~~p~~~G~e~~G~V~~   74 (255)
                      |||+++++++..   ++++ +.|.|+|+++||+|||.+++||++|+++++|.++.      ....+|.++|||++|+|++
T Consensus         1 Mka~~~~~~g~~---l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~   76 (347)
T 1jvb_A            1 MRAVRLVEIGKP---LSLQ-EIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEE   76 (347)
T ss_dssp             CEEEEECSTTSC---CEEE-ECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEE
T ss_pred             CeEEEEecCCCC---eEEE-EeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEE
Confidence            999999998754   5888 89999999999999999999999999999886541      1246799999999999999


Q ss_pred             eCCCCCCCCCCCEEEeccCcc------------------ccCCCCCCcceeeEEeeeC-CceEeCCCCCCHHhhhccchh
Q 025278           75 VGSQVKKFKVGDEVYGDINEK------------------ALDHPKRNGSLAEYTAVEE-NLLALKPKNLSFVEAASLPLA  135 (255)
Q Consensus        75 ~G~~v~~~~~Gd~V~~~~~~~------------------~~~~~~~~g~~~~~~~~~~-~~~~~lp~~~~~~~aa~l~~~  135 (255)
                      +|+++++|++||||+......                  ...+....|+|+||+++|. +.++++ +++++++++.++++
T Consensus        77 vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~  155 (347)
T 1jvb_A           77 VGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCS  155 (347)
T ss_dssp             ECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTH
T ss_pred             ECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccchhh
Confidence            999999999999997643110                  0112235799999999999 999999 99999999999999


Q ss_pred             HHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc----cc
Q 025278          136 TETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE----DL  211 (255)
Q Consensus       136 ~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~----~~  211 (255)
                      +.|||+++++.++++|++|+|+|++|++|++++|+++..+|++|+++++++++++.++++|++.++|+.+.++.    +.
T Consensus       156 ~~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  235 (347)
T 1jvb_A          156 GITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRI  235 (347)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHH
Confidence            99999999888999999999999877999999999998438899999999999999999999999998765542    22


Q ss_pred             C--CCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          212 P--EKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       212 ~--~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .  +++|++||++|.......+.++++ ++|+++.+|...
T Consensus       236 ~~~~~~d~vi~~~g~~~~~~~~~~~l~-~~G~iv~~g~~~  274 (347)
T 1jvb_A          236 TESKGVDAVIDLNNSEKTLSVYPKALA-KQGKYVMVGLFG  274 (347)
T ss_dssp             TTTSCEEEEEESCCCHHHHTTGGGGEE-EEEEEEECCSSC
T ss_pred             hcCCCceEEEECCCCHHHHHHHHHHHh-cCCEEEEECCCC
Confidence            2  489999999998866777788887 789999999876

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1.3e-44  Score=311.28  Aligned_cols=240  Identities=24%  Similarity=0.295  Sum_probs=205.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC-CCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA-TDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |||+++++++++   ++++ +.|.|+|+++||+|||.+++||++|++.++|.++. ....+|.++|||++|+|+++|+++
T Consensus         1 Mka~~~~~~g~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v   76 (343)
T 2dq4_A            1 MRALAKLAPEEG---LTLV-DRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGV   76 (343)
T ss_dssp             CEEEEECSSSSS---CEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTC
T ss_pred             CeEEEEeCCCCc---EEEE-eccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCC
Confidence            999999999874   5888 89999999999999999999999999999986531 013578999999999999999999


Q ss_pred             CCCCCCCEEEeccCccc------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           80 KKFKVGDEVYGDINEKA------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      ++|++||||+..+...+                  ..+....|+|+||+++|.+.++++|+++++++|+.+ .++.|||+
T Consensus        77 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~  155 (343)
T 2dq4_A           77 RRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL-EPFGNAVH  155 (343)
T ss_dssp             CSSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH-HHHHHHHH
T ss_pred             CcCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh-hHHHHHHH
Confidence            99999999998532110                  112335799999999999999999999999998876 46678999


Q ss_pred             HHH-hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCcccccc-----CCC
Q 025278          142 GLE-RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL-----PEK  214 (255)
Q Consensus       142 ~l~-~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-----~~~  214 (255)
                      +++ ..++ +|++|||+|+ |++|++++|+|+.+ |+ +|++++++++|+++++++ +++++|+.+.++.+.     .++
T Consensus       156 ~l~~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g  231 (343)
T 2dq4_A          156 TVYAGSGV-SGKSVLITGA-GPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSG  231 (343)
T ss_dssp             HHHSTTCC-TTSCEEEECC-SHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSC
T ss_pred             HHHHhCCC-CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCC
Confidence            997 8889 9999999996 99999999999996 88 999999999999999999 999999877654432     348


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +|+|||++|.......++++++ ++|+++.+|...+
T Consensus       232 ~D~vid~~g~~~~~~~~~~~l~-~~G~iv~~g~~~~  266 (343)
T 2dq4_A          232 VEVLLEFSGNEAAIHQGLMALI-PGGEARILGIPSD  266 (343)
T ss_dssp             EEEEEECSCCHHHHHHHHHHEE-EEEEEEECCCCSS
T ss_pred             CCEEEECCCCHHHHHHHHHHHh-cCCEEEEEecCCC
Confidence            9999999998766677777887 7899999998654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=2.2e-44  Score=312.08  Aligned_cols=240  Identities=19%  Similarity=0.198  Sum_probs=200.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCC--------CCCCCeEEEEEeEeecChHhHHHHcCC-CCCCCCCCCcccccceEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVP--------SLREDQVLIKVVAAALNPIDFKRMLGA-FSATDSPLPTIPGYDVAGV   71 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p--------~~~~~eV~V~v~~~~i~~~D~~~~~g~-~~~~~~~~p~~~G~e~~G~   71 (255)
                      |||++++.+++    ++++ +.|.|        +|+++||+|||.+++||++|++++++. ++....++|.++|||++|+
T Consensus         9 mka~~~~~~~~----l~~~-~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~   83 (363)
T 3m6i_A            9 NIGVFTNPQHD----LWIS-EASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGE   83 (363)
T ss_dssp             CEEEEECTTCC----EEEE-ECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEE
T ss_pred             ceeEEEeCCCc----EEEE-EecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEE
Confidence            89999998766    4898 89999        999999999999999999999988743 2223356799999999999


Q ss_pred             EEEeCCCCCCCCCCCEEEeccCccc------------------cCC-CCCCcceeeEEeeeCCceEeCCCCCCHHhhhcc
Q 025278           72 VEKVGSQVKKFKVGDEVYGDINEKA------------------LDH-PKRNGSLAEYTAVEENLLALKPKNLSFVEAASL  132 (255)
Q Consensus        72 V~~~G~~v~~~~~Gd~V~~~~~~~~------------------~~~-~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l  132 (255)
                      |+++|+++++|++||||+..+...+                  ..+ ...+|+|+||+++|.+.++++|+ +++++|+.+
T Consensus        84 V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~  162 (363)
T 3m6i_A           84 VIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAML  162 (363)
T ss_dssp             EEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHH
T ss_pred             EEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHHhh
Confidence            9999999999999999987532110                  111 12579999999999999999999 999999977


Q ss_pred             chhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCC-----Cc
Q 025278          133 PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYT-----KE  206 (255)
Q Consensus       133 ~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~-----~~  206 (255)
                       .++.|||+++++.++++|++|||+|+ |++|++++|+|+.+ |++ |++++++++|+++++++ ++.++++.     ..
T Consensus       163 -~~~~ta~~~l~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~  238 (363)
T 3m6i_A          163 -EPLSVALAGLQRAGVRLGDPVLICGA-GPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAE  238 (363)
T ss_dssp             -HHHHHHHHHHHHHTCCTTCCEEEECC-SHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHH
T ss_pred             -hHHHHHHHHHHHcCCCCCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-chhcccccccccchH
Confidence             47789999998899999999999995 99999999999996 886 89999999999999999 66555543     12


Q ss_pred             cccc----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          207 NIED----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       207 ~~~~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      ++.+    .  .+++|+|||++|+......+.++++ ++|+++.+|...+.
T Consensus       239 ~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~-~~G~iv~~G~~~~~  288 (363)
T 3m6i_A          239 ESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVK-FGGKVFVIGVGKNE  288 (363)
T ss_dssp             HHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSC-TTCEEEECCCCCSC
T ss_pred             HHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhc-CCCEEEEEccCCCC
Confidence            2222    1  3489999999999877777888888 89999999987654

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=2.8e-44  Score=310.78  Aligned_cols=235  Identities=19%  Similarity=0.234  Sum_probs=201.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCC---CcccccceEEEEEEeCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL---PTIPGYDVAGVVEKVGS   77 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~---p~~~G~e~~G~V~~~G~   77 (255)
                      |||++++++++.   ++++ +.|.|+|+++||+|||.+++||++|+++++|.++.  .++   |.++|||++| |+++|+
T Consensus         1 MkA~~~~~~~~~---l~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~~~p~v~G~E~~G-V~~vG~   73 (357)
T 2b5w_A            1 MKAIAVKRGEDR---PVVI-EKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGG--FPEGEDHLVLGHEAVG-VVVDPN   73 (357)
T ss_dssp             CEEEEEETTCSS---CEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTT--SCTTCSEEECCSEEEE-EEEECT
T ss_pred             CeEEEEeCCCCc---eEEE-ECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCC--CCCCCCCcccCceeEE-EEEECC
Confidence            999999998873   5888 89999999999999999999999999999987642  355   8999999999 999999


Q ss_pred             CCCCCCCCCEEEeccCcc--c--------------cC------CC-CCCcceeeEEeeeCCceEeCCCCCCHHhhhccch
Q 025278           78 QVKKFKVGDEVYGDINEK--A--------------LD------HP-KRNGSLAEYTAVEENLLALKPKNLSFVEAASLPL  134 (255)
Q Consensus        78 ~v~~~~~Gd~V~~~~~~~--~--------------~~------~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~  134 (255)
                      + ++|++||||+..+...  +              ..      +. ..+|+|+||+++|.+.++++|++++ ++ |+++.
T Consensus        74 ~-~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~~-aal~~  150 (357)
T 2b5w_A           74 D-TELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-EL-GFLIE  150 (357)
T ss_dssp             T-SSCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-TT-GGGHH
T ss_pred             C-CCCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-hh-hhhhc
Confidence            9 9999999999863211  0              00      21 2369999999999999999999999 54 55788


Q ss_pred             hHHHHHHHHHhcccCCC------CEEEEEcCCchHHHHH-HHHH-HHhcCCc-EEEEecChh---hHHHHHHcCCCEEEc
Q 025278          135 ATETAYEGLERSAFSAG------KSILVLGGAGGVGTMV-IQLA-KHVFGAS-KVAATSSTA---KLDLLRSLGADLAID  202 (255)
Q Consensus       135 ~~~ta~~~l~~~~~~~g------~~VlI~ga~g~~G~~a-~~~a-~~~~g~~-vi~~~~~~~---~~~~~~~~g~~~v~~  202 (255)
                      +++|||++++..++++|      ++|||+|+ |++|+++ +|+| +.+ |++ |++++++++   |+++++++|++++ |
T Consensus       151 ~~~ta~~al~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~  227 (357)
T 2b5w_A          151 PISITEKALEHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEELDATYV-D  227 (357)
T ss_dssp             HHHHHHHHHHHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHTTCEEE-E
T ss_pred             hHHHHHHHHHhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHcCCccc-C
Confidence            99999999988889999      99999996 9999999 9999 985 887 999999999   9999999999999 9


Q ss_pred             CCCcccccc---CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          203 YTKENIEDL---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       203 ~~~~~~~~~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +++.++.+.   .+++|+|||++|.......+.++++ ++|+++.+|...
T Consensus       228 ~~~~~~~~i~~~~gg~Dvvid~~g~~~~~~~~~~~l~-~~G~iv~~g~~~  276 (357)
T 2b5w_A          228 SRQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALA-PNGVGALLGVPS  276 (357)
T ss_dssp             TTTSCGGGHHHHSCCEEEEEECSCCHHHHHHHHHHEE-EEEEEEECCCCC
T ss_pred             CCccCHHHHHHhCCCCCEEEECCCChHHHHHHHHHHh-cCCEEEEEeCCC
Confidence            876654431   1379999999998766677778887 789999999876

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=2.6e-43  Score=305.60  Aligned_cols=243  Identities=24%  Similarity=0.311  Sum_probs=206.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      ||++.+..++.. ..++++ ++|.|+|+++||+|||.++|||++|++.++|.++  ...+|.++|||++|+|+++|++++
T Consensus        15 mk~~~~~~~~~~-~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~P~v~GhE~~G~V~~vG~~V~   90 (366)
T 1yqd_A           15 VKAFGWAARDQS-GHLSPF-NFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWG--FSMYPLVPGHEIVGEVTEVGSKVK   90 (366)
T ss_dssp             EEEEEEEECSTT-CCEEEE-EEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSS--CCCSSBCCCCCEEEEEEEECTTCC
T ss_pred             eeEEEEEEcCCC-CCcEEE-EccCCCCCCCeEEEEEEEEeechhhHHHHcCCCC--CCCCCEecccceEEEEEEECCCCC
Confidence            677777666655 568888 8999999999999999999999999999998764  246789999999999999999999


Q ss_pred             CCCCCCEEEecc-----Ccccc---------------------CCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccch
Q 025278           81 KFKVGDEVYGDI-----NEKAL---------------------DHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPL  134 (255)
Q Consensus        81 ~~~~Gd~V~~~~-----~~~~~---------------------~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~  134 (255)
                      +|++||||+..+     +.+..                     .+....|+|+||+++|.+.++++|+++++++++.+++
T Consensus        91 ~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~  170 (366)
T 1yqd_A           91 KVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLC  170 (366)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGT
T ss_pred             cCCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhhh
Confidence            999999998532     11000                     0122579999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcccC-CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCcc-cccc
Q 025278          135 ATETAYEGLERSAFS-AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKEN-IEDL  211 (255)
Q Consensus       135 ~~~ta~~~l~~~~~~-~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~-~~~~  211 (255)
                      ++.|||+++++.+++ +|++|+|+| +|++|++++|+|+.+ |++|++++++++|++.++ ++|+++++|+.+.+ ..+.
T Consensus       171 ~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~  248 (366)
T 1yqd_A          171 AGITVYSPLKYFGLDEPGKHIGIVG-LGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAA  248 (366)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHT
T ss_pred             hHHHHHHHHHhcCcCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHh
Confidence            999999999888888 999999999 699999999999996 899999999999999887 99999999987643 2333


Q ss_pred             CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          212 PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       212 ~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+++|+|||++|.......++++++ ++|+++.+|...+
T Consensus       249 ~~~~D~vid~~g~~~~~~~~~~~l~-~~G~iv~~g~~~~  286 (366)
T 1yqd_A          249 AGTLDGIIDTVSAVHPLLPLFGLLK-SHGKLILVGAPEK  286 (366)
T ss_dssp             TTCEEEEEECCSSCCCSHHHHHHEE-EEEEEEECCCCSS
T ss_pred             hCCCCEEEECCCcHHHHHHHHHHHh-cCCEEEEEccCCC
Confidence            4689999999998766667777777 7899999998664

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=1.3e-43  Score=311.39  Aligned_cols=247  Identities=22%  Similarity=0.299  Sum_probs=205.5

Q ss_pred             CeEEEEcccCCCc------------------------cceEEeecccCCC-CCCCeEEEEEeEeecChHhHHHHcCCCCC
Q 025278            1 MKAWVYKEYGNSQ------------------------SVLKFETNVEVPS-LREDQVLIKVVAAALNPIDFKRMLGAFSA   55 (255)
Q Consensus         1 mka~v~~~~~~~~------------------------~~l~~~~~~~~p~-~~~~eV~V~v~~~~i~~~D~~~~~g~~~~   55 (255)
                      |||+++++++++.                        ..++++ ++|.|+ |+++||+|||.+++||++|++++.|....
T Consensus         3 m~a~~~~~~~~p~~~~~~~~~~~~~~~~m~a~~~~~~~~l~~~-~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~   81 (404)
T 3ip1_A            3 LRAVRLHAKWDPRPEFKLGPKDIEGKLTWLGSKVWRYPEVRVE-EVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEG   81 (404)
T ss_dssp             EEEEEEEEEECCCTTCCCCTTCBTTTBBSCGGGTEEEEEEEEE-EECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTS
T ss_pred             ceEEEecCCCCCCCCCCCCchhhhhhhhcceEEEEeCCceEEE-EcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCc
Confidence            8999999888773                        167888 899999 99999999999999999999999864211


Q ss_pred             -----CCCCCCcccccceEEEEEEeCCCC------CCCCCCCEEEeccCc------------------cccCCCCCCcce
Q 025278           56 -----TDSPLPTIPGYDVAGVVEKVGSQV------KKFKVGDEVYGDINE------------------KALDHPKRNGSL  106 (255)
Q Consensus        56 -----~~~~~p~~~G~e~~G~V~~~G~~v------~~~~~Gd~V~~~~~~------------------~~~~~~~~~g~~  106 (255)
                           ...++|.++|||++|+|+++|+++      ++|++||||+..+..                  ....+...+|+|
T Consensus        82 ~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~  161 (404)
T 3ip1_A           82 YILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAF  161 (404)
T ss_dssp             BBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSS
T ss_pred             cccccccCCCCcccCccceEEEEEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCC
Confidence                 124679999999999999999999      889999999975321                  111234467999


Q ss_pred             eeEEeeeCCceEeCCCCCC------HHhhhccchhHHHHHHHHH-h-cccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-
Q 025278          107 AEYTAVEENLLALKPKNLS------FVEAASLPLATETAYEGLE-R-SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-  177 (255)
Q Consensus       107 ~~~~~~~~~~~~~lp~~~~------~~~aa~l~~~~~ta~~~l~-~-~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-  177 (255)
                      +||+++|.+.++++|+.++      +.+++.++.++.|||+++. . .++++|++|||+|+ |++|++++|+|+.+ |+ 
T Consensus       162 aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~-Ga~  239 (404)
T 3ip1_A          162 AEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGG-GPIGLAAVAILKHA-GAS  239 (404)
T ss_dssp             BSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECC-SHHHHHHHHHHHHT-TCS
T ss_pred             cceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHc-CCC
Confidence            9999999999999999875      4568888999999999994 3 48999999999994 99999999999996 87 


Q ss_pred             cEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCcc-ceeeeeecc----ccCCceEEEEe
Q 025278          178 SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMC-ISIVYQKCD----KFQEKSLINFG  246 (255)
Q Consensus       178 ~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~-~~~~~~~~~----~~~~G~~v~~G  246 (255)
                      +|++++++++|+++++++|+++++|+.+.++.+.      .+++|+||||+|+.. ....+.+++    + ++|+++.+|
T Consensus       240 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~-~~G~iv~~G  318 (404)
T 3ip1_A          240 KVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARG-INATVAIVA  318 (404)
T ss_dssp             EEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSC-CCCEEEECS
T ss_pred             EEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccC-CCcEEEEeC
Confidence            8999999999999999999999999987765432      247999999999873 334444555    6 799999999


Q ss_pred             eccCC
Q 025278          247 LFRQE  251 (255)
Q Consensus       247 ~~~~~  251 (255)
                      ...++
T Consensus       319 ~~~~~  323 (404)
T 3ip1_A          319 RADAK  323 (404)
T ss_dssp             CCCSC
T ss_pred             CCCCC
Confidence            87654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=2e-43  Score=305.89  Aligned_cols=233  Identities=27%  Similarity=0.418  Sum_probs=202.6

Q ss_pred             CeEEEEcccCCC-ccceEE-eecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCC
Q 025278            1 MKAWVYKEYGNS-QSVLKF-ETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQ   78 (255)
Q Consensus         1 mka~v~~~~~~~-~~~l~~-~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~   78 (255)
                      |||+++++++.. .+.+++ + +.|.|+|+++||+|||.+++||++|++.++|.++. ..++|.++|||++|+|+++|++
T Consensus        24 MkA~~~~~~g~~~~~~l~~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~P~i~G~E~~G~V~~vG~~  101 (362)
T 2c0c_A           24 MQKLVVTRLSPNFREAVTLSR-DCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP-SVKPPFDIGFEGIGEVVALGLS  101 (362)
T ss_dssp             EEEEEECSCCSSHHHHEEEEE-EEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCT-TCCSCEECCSEEEEEEEEECTT
T ss_pred             ceEEEEeecCCCccceeEEEe-ecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCC-CCCCCCCCCceeEEEEEEECCC
Confidence            899999998752 135788 7 89999999999999999999999999999987642 2467999999999999999999


Q ss_pred             CC-CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEE
Q 025278           79 VK-KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILV  156 (255)
Q Consensus        79 v~-~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI  156 (255)
                      ++ +|++||||+...          .|+|+||+++|.+.++++|+. + .+++.++.+++|||+++. ..++++|++|||
T Consensus       102 V~~~~~vGdrV~~~~----------~G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV  169 (362)
T 2c0c_A          102 ASARYTVGQAVAYMA----------PGSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLV  169 (362)
T ss_dssp             GGGTCCTTCEEEEEC----------SCCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEE
T ss_pred             ccCCCCCCCEEEEcc----------CCcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEE
Confidence            99 999999999864          599999999999999999986 4 466778889999999994 578999999999


Q ss_pred             EcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc-----CCCccEEEECCCCccceeee
Q 025278          157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL-----PEKFDVVFDAVGKMCISIVY  231 (255)
Q Consensus       157 ~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-----~~~~d~vid~~G~~~~~~~~  231 (255)
                      +||+|++|++++|+|+.. |++|++++++++|++.++++|++.++++++.++.+.     .+++|++|||+|. .....+
T Consensus       170 ~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~  247 (362)
T 2c0c_A          170 TAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG-AMFDLA  247 (362)
T ss_dssp             TTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-HHHHHH
T ss_pred             eCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-HHHHHH
Confidence            999999999999999995 899999999999999999999999999876654331     2479999999997 345556


Q ss_pred             eeccccCCceEEEEeeccC
Q 025278          232 QKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       232 ~~~~~~~~G~~v~~G~~~~  250 (255)
                      .++++ ++|+++.+|...+
T Consensus       248 ~~~l~-~~G~iv~~g~~~~  265 (362)
T 2c0c_A          248 VDALA-TKGRLIVIGFISG  265 (362)
T ss_dssp             HHHEE-EEEEEEECCCGGG
T ss_pred             HHHHh-cCCEEEEEeCCCC
Confidence            77777 7899999998764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-43  Score=302.42  Aligned_cols=239  Identities=26%  Similarity=0.329  Sum_probs=201.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.+ ..++++ +.|.|+|+++||+||+.+++||++|++.++|.++. ...+|.++|||++|+|++.  +++
T Consensus         4 mka~~~~~~g~~-~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~E~~G~V~~~--~v~   78 (328)
T 1xa0_A            4 FQAFVVNKTETE-FTAGVQ-TISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKI-VKTYPFVPGIDLAGVVVSS--QHP   78 (328)
T ss_dssp             EEEEEEEEETTE-EEEEEE-EEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSS-CCSSSBCCCSEEEEEEEEC--CSS
T ss_pred             ceEEEEecCCCc-ceeEEE-eccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCC-CCCCCcccCcceEEEEEec--CCC
Confidence            899999998864 457888 89999999999999999999999999999886542 2457899999999999995  568


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH---HhcccCCCC-EEEE
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL---ERSAFSAGK-SILV  156 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l---~~~~~~~g~-~VlI  156 (255)
                      +|++||||+.....   .+....|+|+||+++|.+.++++|+++++++|+.+++++.|+|.++   ++.++++|+ +|+|
T Consensus        79 ~~~vGdrV~~~~~~---~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV  155 (328)
T 1xa0_A           79 RFREGDEVIATGYE---IGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLV  155 (328)
T ss_dssp             SCCTTCEEEEESTT---BTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred             CCCCCCEEEEcccc---CCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEE
Confidence            89999999986321   1223469999999999999999999999999999999999999876   356788986 9999


Q ss_pred             EcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc---cccc-CCCccEEEECCCCccceeeee
Q 025278          157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN---IEDL-PEKFDVVFDAVGKMCISIVYQ  232 (255)
Q Consensus       157 ~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~-~~~~d~vid~~G~~~~~~~~~  232 (255)
                      +|++|++|++++|+|+.+ |++|++++++++|+++++++|+++++|+.+.+   ..+. .+++|++|||+|+. ....++
T Consensus       156 ~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~~-~~~~~~  233 (328)
T 1xa0_A          156 TGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR-TLATVL  233 (328)
T ss_dssp             SSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT-THHHHH
T ss_pred             ecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcHH-HHHHHH
Confidence            998899999999999996 89999999999999999999999999986542   1111 24799999999985 456667


Q ss_pred             eccccCCceEEEEeeccC
Q 025278          233 KCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       233 ~~~~~~~G~~v~~G~~~~  250 (255)
                      ++++ ++|+++.+|..++
T Consensus       234 ~~l~-~~G~~v~~G~~~~  250 (328)
T 1xa0_A          234 SRMR-YGGAVAVSGLTGG  250 (328)
T ss_dssp             HTEE-EEEEEEECSCCSS
T ss_pred             Hhhc-cCCEEEEEeecCC
Confidence            7777 7899999998765

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=1.5e-43  Score=315.50  Aligned_cols=246  Identities=27%  Similarity=0.390  Sum_probs=203.9

Q ss_pred             CeEEEEcccC------------CCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC-------------
Q 025278            1 MKAWVYKEYG------------NSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA-------------   55 (255)
Q Consensus         1 mka~v~~~~~------------~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~-------------   55 (255)
                      |||+++++++            .+...++++ +.|.|+|+++||+|||.+++||++|++...+....             
T Consensus        31 mkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~-e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~g~~~~  109 (456)
T 3krt_A           31 YRAITVHKDETEMFAGLETRDKDPRKSIHLD-DVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSD  109 (456)
T ss_dssp             EEEEEEEGGGTTTTTTCCGGGCCHHHHCEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHHHTSCH
T ss_pred             eEEEEEeccccccccccccccCCCCCCcEEE-EccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhcccccc
Confidence            8999999872            112457998 89999999999999999999999998765432100             


Q ss_pred             --CCCCCC-cccccceEEEEEEeCCCCCCCCCCCEEEeccCccc-----------------cCCC-CCCcceeeEEeeeC
Q 025278           56 --TDSPLP-TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKA-----------------LDHP-KRNGSLAEYTAVEE  114 (255)
Q Consensus        56 --~~~~~p-~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~-----------------~~~~-~~~g~~~~~~~~~~  114 (255)
                        ...++| .++|||++|+|+++|+++++|++||||+..+..+.                 ..+. ..+|+|+||+++|.
T Consensus       110 ~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~  189 (456)
T 3krt_A          110 LAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKS  189 (456)
T ss_dssp             HHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEG
T ss_pred             ccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCCcccccccccccccccCccccccccCCCCCcccceEEech
Confidence              012456 68999999999999999999999999998643211                 1111 12599999999999


Q ss_pred             CceEeCCCCCCHHhhhccchhHHHHHHHHHh---cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH
Q 025278          115 NLLALKPKNLSFVEAASLPLATETAYEGLER---SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL  191 (255)
Q Consensus       115 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~---~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~  191 (255)
                      +.++++|+++++++|+.+++++.|||+++..   .++++|++|+|+|++|++|++++|+|+.+ |+++++++++++|+++
T Consensus       190 ~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~  268 (456)
T 3krt_A          190 NQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEI  268 (456)
T ss_dssp             GGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHH
T ss_pred             HHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHH
Confidence            9999999999999999999999999999843   78999999999998899999999999995 9999999999999999


Q ss_pred             HHHcCCCEEEcCCCcccc-----------------c----c--CCCccEEEECCCCccceeeeeeccccCCceEEEEeec
Q 025278          192 LRSLGADLAIDYTKENIE-----------------D----L--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       192 ~~~~g~~~v~~~~~~~~~-----------------~----~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ++++|++.++|+.+.++.                 +    .  .+++|+||||+|+ .....++.+++ ++|+++.+|..
T Consensus       269 ~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~-~~~~~~~~~l~-~~G~iv~~G~~  346 (456)
T 3krt_A          269 CRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR-ETFGASVFVTR-KGGTITTCAST  346 (456)
T ss_dssp             HHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCH-HHHHHHHHHEE-EEEEEEESCCT
T ss_pred             HHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCc-hhHHHHHHHhh-CCcEEEEEecC
Confidence            999999999998775431                 1    1  2489999999998 55666777787 78999999987


Q ss_pred             cC
Q 025278          249 RQ  250 (255)
Q Consensus       249 ~~  250 (255)
                      .+
T Consensus       347 ~~  348 (456)
T 3krt_A          347 SG  348 (456)
T ss_dssp             TC
T ss_pred             CC
Confidence            65

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=8.1e-44  Score=316.52  Aligned_cols=245  Identities=29%  Similarity=0.423  Sum_probs=201.4

Q ss_pred             CeEEEEcccC----------CCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHc----------------CCCC
Q 025278            1 MKAWVYKEYG----------NSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRML----------------GAFS   54 (255)
Q Consensus         1 mka~v~~~~~----------~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~----------------g~~~   54 (255)
                      |||++++.++          .+.+.++++ +.|.|+|+++||+|||.++|||++|++...                |.++
T Consensus        25 mkA~v~~~~~~~~~~~~~~~~~~~~l~~~-e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~~g~~~  103 (447)
T 4a0s_A           25 YLALHLRAEDADMFKGVADKDVRKSLRLG-EVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWA  103 (447)
T ss_dssp             EEEEEEEGGGTTTTTTCSSCCHHHHCEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHTTCGGG
T ss_pred             heeeeeeccccccccccccCCCCCCceEE-eccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcccCccc
Confidence            8999999987          111347998 899999999999999999999999985432                2221


Q ss_pred             CCCCCCC-cccccceEEEEEEeCCCCCCCCCCCEEEeccCccc-----------------cCCCC-CCcceeeEEeeeCC
Q 025278           55 ATDSPLP-TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKA-----------------LDHPK-RNGSLAEYTAVEEN  115 (255)
Q Consensus        55 ~~~~~~p-~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~-----------------~~~~~-~~g~~~~~~~~~~~  115 (255)
                       ...++| .++|||++|+|+++|+++++|++||||+..+...+                 ..+.. ..|+|+||+++|.+
T Consensus       104 -~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~  182 (447)
T 4a0s_A          104 -TRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRAS  182 (447)
T ss_dssp             -GGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGG
T ss_pred             -cccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeeeecCHH
Confidence             112456 69999999999999999999999999998642111                 01111 25999999999999


Q ss_pred             ceEeCCCCCCHHhhhccchhHHHHHHHHH---hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          116 LLALKPKNLSFVEAASLPLATETAYEGLE---RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       116 ~~~~lp~~~~~~~aa~l~~~~~ta~~~l~---~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      .++++|+++++++++.++++++|||+++.   ..++++|++|||+|++|++|++++|+|+++ |+++++++++++|++++
T Consensus       183 ~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~  261 (447)
T 4a0s_A          183 QLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAV  261 (447)
T ss_dssp             GEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH
T ss_pred             HcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH
Confidence            99999999999999999999999999993   488999999999998899999999999995 99999999999999999


Q ss_pred             HHcCCCEEEcCCCcccc------------------c-----cCCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          193 RSLGADLAIDYTKENIE------------------D-----LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       193 ~~~g~~~v~~~~~~~~~------------------~-----~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +++|+++++|+.+.++.                  +     ..+++|++||++|.. ....++.+++ ++|+++.+|...
T Consensus       262 ~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~-~~~~~~~~l~-~~G~iv~~G~~~  339 (447)
T 4a0s_A          262 RALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRV-TFGLSVIVAR-RGGTVVTCGSSS  339 (447)
T ss_dssp             HHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHH-HHHHHHHHSC-TTCEEEESCCTT
T ss_pred             HhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCch-HHHHHHHHHh-cCCEEEEEecCC
Confidence            99999999987544321                  1     135799999999984 4455667777 789999999876


Q ss_pred             C
Q 025278          250 Q  250 (255)
Q Consensus       250 ~  250 (255)
                      +
T Consensus       340 ~  340 (447)
T 4a0s_A          340 G  340 (447)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=1.8e-43  Score=309.96  Aligned_cols=236  Identities=24%  Similarity=0.295  Sum_probs=200.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCC-CC-----CeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSL-RE-----DQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEK   74 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~-~~-----~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~   74 (255)
                      |||++++++++    ++++ +.|.|+| ++     +||+|||.+++||++|+++++|.++   .++|.++|||++|+|++
T Consensus         3 MkA~~~~~~~~----l~~~-~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~---~~~p~v~GhE~~G~V~~   74 (398)
T 2dph_A            3 NKSVVYHGTRD----LRVE-TVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI---VPKGHVLGHEITGEVVE   74 (398)
T ss_dssp             EEEEEEEETTE----EEEE-EECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC---CCTTCBCCCCEEEEEEE
T ss_pred             cEEEEEEcCCC----EEEE-EccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC---CCCCcccCCceEEEEEE
Confidence            89999998764    5888 8999987 68     9999999999999999999998642   46789999999999999


Q ss_pred             eCCCCCCCCCCCEEEeccCcccc--------------------------CCC---CCCcceeeEEeeeCC--ceEeCCCC
Q 025278           75 VGSQVKKFKVGDEVYGDINEKAL--------------------------DHP---KRNGSLAEYTAVEEN--LLALKPKN  123 (255)
Q Consensus        75 ~G~~v~~~~~Gd~V~~~~~~~~~--------------------------~~~---~~~g~~~~~~~~~~~--~~~~lp~~  123 (255)
                      +|+++++|++||||+..+...+.                          .+.   ...|+|+||+++|.+  .++++|++
T Consensus        75 vG~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~  154 (398)
T 2dph_A           75 KGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDK  154 (398)
T ss_dssp             ECTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSH
T ss_pred             ECCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCCC
Confidence            99999999999999975321100                          011   246999999999987  89999999


Q ss_pred             CCHHh----hhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCC
Q 025278          124 LSFVE----AASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGAD  198 (255)
Q Consensus       124 ~~~~~----aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~  198 (255)
                      +++++    ++.+++++.|||++++..++++|++|||+| +|++|++++|+|+.+ |+ +|++++++++|+++++++|++
T Consensus       155 ~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~  232 (398)
T 2dph_A          155 EQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAG-AGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDAGFE  232 (398)
T ss_dssp             HHHHHTHHHHTTTTTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTTTCE
T ss_pred             CChhhhcchhhhhcCHHHHHHHHHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCc
Confidence            99987    888899999999999889999999999999 699999999999996 87 899999999999999999996


Q ss_pred             EEEcCCCccc-ccc------CCCccEEEECCCCcc--------------ceeeeeeccccCCceEEEEeec
Q 025278          199 LAIDYTKENI-EDL------PEKFDVVFDAVGKMC--------------ISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       199 ~v~~~~~~~~-~~~------~~~~d~vid~~G~~~--------------~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                       ++|+.+.++ .+.      ..++|+|||++|...              ....++++++ ++|+++.+|..
T Consensus       233 -~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gG~iv~~G~~  301 (398)
T 2dph_A          233 -TIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVR-AGGAIGIPGIY  301 (398)
T ss_dssp             -EEETTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEE-EEEEEECCSCC
T ss_pred             -EEcCCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHh-cCCEEEEeccc
Confidence             888876654 321      237999999999763              3455677777 78999999986

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=3.3e-43  Score=301.04  Aligned_cols=239  Identities=28%  Similarity=0.318  Sum_probs=202.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.+ ..++++ +.|.|+|+++||+||+.++|||++|++.++|.++. ...+|.++|||++|+|+++  +++
T Consensus         5 mka~~~~~~g~~-~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~i~G~E~~G~V~~~--~v~   79 (330)
T 1tt7_A            5 FQALQAEKNADD-VSVHVK-TISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNI-VREYPLILGIDAAGTVVSS--NDP   79 (330)
T ss_dssp             EEEEEECCGGGS-CCCEEE-EEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTT-CSSCSEECCSEEEEEEEEC--SST
T ss_pred             ceEEEEecCCCC-cceeEe-ecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCC-cCCCCccccceEEEEEEEc--CCC
Confidence            899999998853 456888 89999999999999999999999999999886542 2457899999999999996  467


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH---hcccCCCC-EEEE
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE---RSAFSAGK-SILV  156 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~---~~~~~~g~-~VlI  156 (255)
                      +|++||||+.....   .+....|+|+||+++|.+.++++|+++++++++.+++++.|||.++.   +.++++|+ +|||
T Consensus        80 ~~~vGdrV~~~~~~---~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV  156 (330)
T 1tt7_A           80 RFAEGDEVIATSYE---LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLV  156 (330)
T ss_dssp             TCCTTCEEEEESTT---BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred             CCCCCCEEEEcccc---cCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEE
Confidence            89999999986421   12234799999999999999999999999999999999999998763   46788986 9999


Q ss_pred             EcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc---cccc-CCCccEEEECCCCccceeeee
Q 025278          157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN---IEDL-PEKFDVVFDAVGKMCISIVYQ  232 (255)
Q Consensus       157 ~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~-~~~~d~vid~~G~~~~~~~~~  232 (255)
                      +|++|++|++++|+|+.+ |++|++++++++|+++++++|+++++|+++.+   ..+. .+++|++|||+|+. ....++
T Consensus       157 ~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~~-~~~~~~  234 (330)
T 1tt7_A          157 TGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGK-QLASLL  234 (330)
T ss_dssp             ESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTH-HHHHHH
T ss_pred             ECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcHH-HHHHHH
Confidence            998899999999999996 89999999999999999999999999875432   1111 24799999999984 556667


Q ss_pred             eccccCCceEEEEeeccC
Q 025278          233 KCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       233 ~~~~~~~G~~v~~G~~~~  250 (255)
                      ++++ ++|+++.+|..++
T Consensus       235 ~~l~-~~G~iv~~G~~~~  251 (330)
T 1tt7_A          235 SKIQ-YGGSVAVSGLTGG  251 (330)
T ss_dssp             TTEE-EEEEEEECCCSSC
T ss_pred             Hhhc-CCCEEEEEecCCC
Confidence            7777 7899999998764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.3e-43  Score=306.95  Aligned_cols=236  Identities=22%  Similarity=0.322  Sum_probs=198.4

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCC-CCe------EEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLR-EDQ------VLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVE   73 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~-~~e------V~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~   73 (255)
                      |||+++++++.    ++++ +.|.|+|. ++|      |+|||.+++||++|+++++|.++   .++|.++|||++|+|+
T Consensus         3 Mka~~~~~~~~----l~~~-~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~p~v~GhE~~G~V~   74 (398)
T 1kol_A            3 NRGVVYLGSGK----VEVQ-KIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT---AQVGLVLGHEITGEVI   74 (398)
T ss_dssp             EEEEEEEETTE----EEEE-EECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC---CCTTCBCCCCEEEEEE
T ss_pred             cEEEEEecCCc----eEEE-EecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC---CCCCcccCcccEEEEE
Confidence            89999998764    5888 89999997 898      99999999999999999998653   4578999999999999


Q ss_pred             EeCCCCCCCCCCCEEEeccCccc------------------------cCCC----CCCcceeeEEeeeCC--ceEeCCCC
Q 025278           74 KVGSQVKKFKVGDEVYGDINEKA------------------------LDHP----KRNGSLAEYTAVEEN--LLALKPKN  123 (255)
Q Consensus        74 ~~G~~v~~~~~Gd~V~~~~~~~~------------------------~~~~----~~~g~~~~~~~~~~~--~~~~lp~~  123 (255)
                      ++|+++++|++||||+..+...+                        ..+.    ...|+|+||+++|..  .++++|++
T Consensus        75 ~vG~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~  154 (398)
T 1kol_A           75 EKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDR  154 (398)
T ss_dssp             EECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCH
T ss_pred             EECCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCC
Confidence            99999999999999986421100                        0011    236999999999987  89999999


Q ss_pred             CCHHh----hhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCC
Q 025278          124 LSFVE----AASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGAD  198 (255)
Q Consensus       124 ~~~~~----aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~  198 (255)
                      +++++    ++.+++++.|||+++++.++++|++|||+| +|++|++++|+|+.+ |+ +|++++++++|+++++++|++
T Consensus       155 ~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G-aG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a~~lGa~  232 (398)
T 1kol_A          155 DKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAG-AGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFE  232 (398)
T ss_dssp             HHHHHTHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCE
T ss_pred             cchhhhcccccccccHHHHHHHHHHHcCCCCCCEEEEEC-CcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHcCCc
Confidence            99887    788899999999999888999999999999 799999999999996 87 688999999999999999997


Q ss_pred             EEEcCCCcc-ccc----c--CCCccEEEECCCCcc---------------ceeeeeeccccCCceEEEEeec
Q 025278          199 LAIDYTKEN-IED----L--PEKFDVVFDAVGKMC---------------ISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       199 ~v~~~~~~~-~~~----~--~~~~d~vid~~G~~~---------------~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                       ++++.+.+ +.+    .  .+++|+|||++|...               ....++++++ ++|+++.+|.+
T Consensus       233 -~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~iv~~G~~  302 (398)
T 1kol_A          233 -IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTR-VAGKIGIPGLY  302 (398)
T ss_dssp             -EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEE-EEEEEEECSCC
T ss_pred             -EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHh-cCCEEEEeccc
Confidence             78876543 222    1  247999999999763               3456677777 78999999986

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=2.3e-43  Score=307.31  Aligned_cols=219  Identities=22%  Similarity=0.265  Sum_probs=190.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC-------------------------
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA-------------------------   55 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~-------------------------   55 (255)
                      |||++.....   ..++++ +.|.|+|+++||+|||.+++||++|+++++|.++.                         
T Consensus         8 mka~v~~~~~---~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~   83 (379)
T 3iup_A            8 LRSRIKSSGE---LELSLD-SIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRS   83 (379)
T ss_dssp             EEEEECTTSE---EEEEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHH
T ss_pred             HHHHHhcCCC---CceEEE-eccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccc
Confidence            8888776322   347888 89999999999999999999999999999885310                         


Q ss_pred             --CCCCCCcccccceEEEEEEeCCCC-CCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhcc
Q 025278           56 --TDSPLPTIPGYDVAGVVEKVGSQV-KKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASL  132 (255)
Q Consensus        56 --~~~~~p~~~G~e~~G~V~~~G~~v-~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l  132 (255)
                        ...++|.++|||++|+|+++|+++ ++|++||||+...          .|+|+||+++|.+.++++|+++++++|+.+
T Consensus        84 ~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~----------~G~~aey~~v~~~~~~~iP~~~~~~~aa~l  153 (379)
T 3iup_A           84 MAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG----------GAMYSQYRCIPADQCLVLPEGATPADGASS  153 (379)
T ss_dssp             HGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC----------SCCSBSEEEEEGGGEEECCTTCCHHHHTTS
T ss_pred             cccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC----------CCcceeEEEeCHHHeEECCCCCCHHHHHhh
Confidence              023568999999999999999999 8899999999865          599999999999999999999999999999


Q ss_pred             chhHHHHHHHHHhcccCCCCEEEEEc-CCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc
Q 025278          133 PLATETAYEGLERSAFSAGKSILVLG-GAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL  211 (255)
Q Consensus       133 ~~~~~ta~~~l~~~~~~~g~~VlI~g-a~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  211 (255)
                      ++..+|||++++... ++|++|||+| |+|++|++++|+|+.+ |++|++++++++|+++++++|+++++|+++.++.+.
T Consensus       154 ~~~~~ta~~~~~~~~-~~g~~vlV~gag~G~vG~~a~q~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~  231 (379)
T 3iup_A          154 FVNPLTALGMVETMR-LEGHSALVHTAAASNLGQMLNQICLKD-GIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQD  231 (379)
T ss_dssp             SHHHHHHHHHHHHHH-HTTCSCEEESSTTSHHHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHTTCSCEEETTSTTHHHH
T ss_pred             hhhHHHHHHHHHHhc-cCCCEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHhCCCcEEEeCCChHHHHH
Confidence            999999998887666 8999999995 7999999999999996 999999999999999999999999999987765442


Q ss_pred             ------CCCccEEEECCCCccceeeeeecc
Q 025278          212 ------PEKFDVVFDAVGKMCISIVYQKCD  235 (255)
Q Consensus       212 ------~~~~d~vid~~G~~~~~~~~~~~~  235 (255)
                            .+++|+||||+|+......+.+++
T Consensus       232 v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l  261 (379)
T 3iup_A          232 LTEALVSTGATIAFDATGGGKLGGQILTCM  261 (379)
T ss_dssp             HHHHHHHHCCCEEEESCEEESHHHHHHHHH
T ss_pred             HHHHhcCCCceEEEECCCchhhHHHHHHhc
Confidence                  137999999999876655555554

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=4.6e-42  Score=290.47  Aligned_cols=221  Identities=33%  Similarity=0.427  Sum_probs=190.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++ .  .++ +.|.|+|+++||+||+.+++||++|++.++|.++. ..++|.++|||++|+|+       
T Consensus         1 Mka~~~~~~g~~-~--~l~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~i~G~e~~G~V~-------   68 (302)
T 1iz0_A            1 MKAWVLKRLGGP-L--ELV-DLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLT-RLHPPFIPGMEVVGVVE-------   68 (302)
T ss_dssp             CEEEEECSTTSC-E--EEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCCEEEEEET-------
T ss_pred             CeEEEEcCCCCc-h--heE-ECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCcccceEEEEEE-------
Confidence            999999999877 2  466 78999999999999999999999999999997653 23679999999999997       


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga  159 (255)
                          ||||++..         .+|+|+||+++|.+.++++|+++++++++.++++++|||+++. .. +++|++|+|+|+
T Consensus        69 ----GdrV~~~~---------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga  134 (302)
T 1iz0_A           69 ----GRRYAALV---------PQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAA  134 (302)
T ss_dssp             ----TEEEEEEC---------SSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESST
T ss_pred             ----CcEEEEec---------CCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECC
Confidence                99999865         2699999999999999999999999999999999999999995 56 999999999998


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCC-ccccccCCCccEEEECCCCccceeeeeeccccC
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK-ENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQ  238 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~  238 (255)
                      +|++|++++|+|+.+ |++|++++++++|++.++++|+++++|+.+ .++.+..+++|++|| +|+ .....+.++++ +
T Consensus       135 ~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~~~~~~~~l~-~  210 (302)
T 1iz0_A          135 AGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KEVEESLGLLA-H  210 (302)
T ss_dssp             TBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TTHHHHHTTEE-E
T ss_pred             CcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HHHHHHHHhhc-c
Confidence            899999999999995 899999999999999999999999999876 555444478999999 998 45566677777 7


Q ss_pred             CceEEEEeeccCC
Q 025278          239 EKSLINFGLFRQE  251 (255)
Q Consensus       239 ~G~~v~~G~~~~~  251 (255)
                      +|+++.+|...+.
T Consensus       211 ~G~~v~~g~~~~~  223 (302)
T 1iz0_A          211 GGRLVYIGAAEGE  223 (302)
T ss_dssp             EEEEEEC------
T ss_pred             CCEEEEEeCCCCC
Confidence            8999999987653

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.5e-41  Score=291.36  Aligned_cols=227  Identities=25%  Similarity=0.281  Sum_probs=196.3

Q ss_pred             CeEEEEcc--cC--CCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccc----eEEEE
Q 025278            1 MKAWVYKE--YG--NSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYD----VAGVV   72 (255)
Q Consensus         1 mka~v~~~--~~--~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e----~~G~V   72 (255)
                      ||||+++.  +|  .+ ..++++ +.|.|+|++|||+|||.+++||++|+..+.+..   ...+|.++|||    ++|+|
T Consensus         8 mka~v~~~~~~g~~~~-~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~---~~~~p~~~G~e~g~~~~G~V   82 (336)
T 4b7c_A            8 NRQYQLAQRPSGLPGR-DTFSFV-ETPLGEPAEGQILVKNEYLSLDPAMRGWMNDAR---SYIPPVGIGEVMRALGVGKV   82 (336)
T ss_dssp             EEEEEECSCCSSSCCT-TSEEEE-EEECCCCCTTCEEEEEEEEECCTHHHHHHSCSC---CSSCCCCTTSBCCCEEEEEE
T ss_pred             ccEEEEEecCCCCCCC-CceEEE-eccCCCCCCCEEEEEEEEEEeCHHHHhhhhccc---ccCCCCCCCcccCCceEEEE
Confidence            89999986  23  23 568999 899999999999999999999999999887643   23457777777    79999


Q ss_pred             EEeCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhh--hccchhHHHHHHHH-HhcccC
Q 025278           73 EKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEA--ASLPLATETAYEGL-ERSAFS  149 (255)
Q Consensus        73 ~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a--a~l~~~~~ta~~~l-~~~~~~  149 (255)
                      ++  +++++|++||||++            .|+|+||+++|.+.++++|+++++.++  +.++++++|||+++ +..+++
T Consensus        83 ~~--~~v~~~~vGdrV~~------------~G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~  148 (336)
T 4b7c_A           83 LV--SKHPGFQAGDYVNG------------ALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPK  148 (336)
T ss_dssp             EE--ECSTTCCTTCEEEE------------ECCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCC
T ss_pred             Ee--cCCCCCCCCCEEec------------cCCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCC
Confidence            99  45889999999997            489999999999999999999977666  77899999999999 788999


Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEEcCCCcccccc-----CCCccEEEECCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAIDYTKENIEDL-----PEKFDVVFDAVG  223 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~-----~~~~d~vid~~G  223 (255)
                      +|++|||+|++|++|++++|+|+.. |++|++++++++|++.+ +++|+++++|+.+.++.+.     .+++|++||++|
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  227 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG  227 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence            9999999998899999999999985 99999999999999999 8999999999887664432     347999999999


Q ss_pred             CccceeeeeeccccCCceEEEEeecc
Q 025278          224 KMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       224 ~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +. ....+..+++ ++|+++.+|..+
T Consensus       228 ~~-~~~~~~~~l~-~~G~iv~~G~~~  251 (336)
T 4b7c_A          228 GE-ILDTVLTRIA-FKARIVLCGAIS  251 (336)
T ss_dssp             HH-HHHHHHTTEE-EEEEEEECCCGG
T ss_pred             cc-hHHHHHHHHh-hCCEEEEEeecc
Confidence            74 4556677777 789999999876

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=3.3e-41  Score=292.51  Aligned_cols=233  Identities=21%  Similarity=0.233  Sum_probs=193.0

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCC-CeEEEEEeEeecChHhHHHHcC--CCCCCCCCC---CcccccceEEEEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLRE-DQVLIKVVAAALNPIDFKRMLG--AFSATDSPL---PTIPGYDVAGVVEK   74 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~-~eV~V~v~~~~i~~~D~~~~~g--~~~~~~~~~---p~~~G~e~~G~V~~   74 (255)
                      |||++++++++.   ++++ +.|.|+|++ +||+|||.+++||++|++.++|  .++  ..++   |.++|||++|+|++
T Consensus         1 MkA~~~~~~g~~---l~~~-~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~~~~~~p~v~G~E~~G~V~~   74 (366)
T 2cdc_A            1 MKAIIVKPPNAG---VQVK-DVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLS--TLPKGKDFLVLGHEAIGVVEE   74 (366)
T ss_dssp             CEEEEECTTSCC---CEEE-ECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC---------CCSCEECCSEEEEEECS
T ss_pred             CeEEEEeCCCCc---eEEE-ECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCC--CCCcCCCCCcCCcceEEEEEe
Confidence            999999998873   5888 899999999 9999999999999999999998  553  2345   89999999999999


Q ss_pred             eCCCCCCCCCCCEEEeccCccc--------------c----C--CCC-CCcceeeEEeeeCCceEeCCCCCCHHhhhccc
Q 025278           75 VGSQVKKFKVGDEVYGDINEKA--------------L----D--HPK-RNGSLAEYTAVEENLLALKPKNLSFVEAASLP  133 (255)
Q Consensus        75 ~G~~v~~~~~Gd~V~~~~~~~~--------------~----~--~~~-~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~  133 (255)
                        ++ ++|++||||+..+...+              .    .  +.. ..|+|+||+++|.+.++++|++++ ++|+ ++
T Consensus        75 --~~-~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~  149 (366)
T 2cdc_A           75 --SY-HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGI-LA  149 (366)
T ss_dssp             --CC-SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTGG-GH
T ss_pred             --CC-CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhhh-hc
Confidence              66 88999999997532110              0    0  222 469999999999999999999999 7764 77


Q ss_pred             hhHHHHHHHHH-----hcccC--C-------CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh---hhHHHHHHcC
Q 025278          134 LATETAYEGLE-----RSAFS--A-------GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST---AKLDLLRSLG  196 (255)
Q Consensus       134 ~~~~ta~~~l~-----~~~~~--~-------g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~---~~~~~~~~~g  196 (255)
                      .++.|||+++.     ..+++  +       |++|+|+|+ |++|++++|+|+.+ |++|+++++++   +|+++++++|
T Consensus       150 ~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~~g  227 (366)
T 2cdc_A          150 QPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEETK  227 (366)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHHhC
Confidence            88899999997     78888  8       999999997 99999999999996 88999999998   8999999999


Q ss_pred             CCEEEcCCCcccccc----CCCccEEEECCCCccce-eeeeeccccCCceEEEEeeccC
Q 025278          197 ADLAIDYTKENIEDL----PEKFDVVFDAVGKMCIS-IVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       197 ~~~v~~~~~~~~~~~----~~~~d~vid~~G~~~~~-~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++.+ | .+ ++.+.    .+++|++||++|..... ..+.++++ ++|+++.+|...+
T Consensus       228 a~~v-~-~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~~l~-~~G~iv~~g~~~~  282 (366)
T 2cdc_A          228 TNYY-N-SS-NGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLG-RNGVLGLFGFSTS  282 (366)
T ss_dssp             CEEE-E-CT-TCSHHHHHHHCCEEEEEECCCCCTHHHHHHGGGEE-EEEEEEECSCCCS
T ss_pred             Ccee-c-hH-HHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHHh-cCCEEEEEecCCC
Confidence            9988 7 54 43221    15799999999987666 66677777 7899999998765

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=2e-40  Score=286.59  Aligned_cols=231  Identities=27%  Similarity=0.362  Sum_probs=196.3

Q ss_pred             CeEEEE-ccc---CCC-ccceEEeecccCCCC-CCCeEEEEEeEeecChHhHHHHcC----CCCCCCCCCCcccccceEE
Q 025278            1 MKAWVY-KEY---GNS-QSVLKFETNVEVPSL-REDQVLIKVVAAALNPIDFKRMLG----AFSATDSPLPTIPGYDVAG   70 (255)
Q Consensus         1 mka~v~-~~~---~~~-~~~l~~~~~~~~p~~-~~~eV~V~v~~~~i~~~D~~~~~g----~~~~~~~~~p~~~G~e~~G   70 (255)
                      |||+++ +.+   |.+ ...++++ +.|.|+| +++||+|||.+++||++|++.+.+    .++ ...++|.++|||++|
T Consensus         9 mka~v~~~~~~~~g~p~~~~l~~~-~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~-~~~~~p~v~G~E~~G   86 (357)
T 2zb4_A            9 VQRVVLNSRPGKNGNPVAENFRME-EVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYI-TPWQLSQVVDGGGIG   86 (357)
T ss_dssp             EEEEEECCCCCTTSCCCGGGEEEE-EEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSS-CCCCBTSBCEEEEEE
T ss_pred             ceEEEEeccCCCCCCCCcCceEEE-eecCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccc-CCCCCCccccccEEE
Confidence            899999 565   432 2458998 8999999 999999999999999999988775    221 134678999999999


Q ss_pred             EEEEeCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCC-----CHHhhhccchhHHHHHHHH-H
Q 025278           71 VVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNL-----SFVEAASLPLATETAYEGL-E  144 (255)
Q Consensus        71 ~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~-----~~~~aa~l~~~~~ta~~~l-~  144 (255)
                      +|++  +++++|++||||++.           .|+|+||+++|.+.++++|+++     +.+ +++++++++|||+++ +
T Consensus        87 ~V~~--~~v~~~~vGdrV~~~-----------~G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~  152 (357)
T 2zb4_A           87 IIEE--SKHTNLTKGDFVTSF-----------YWPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQE  152 (357)
T ss_dssp             EEEE--ECSTTCCTTCEEEEE-----------EEESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHH
T ss_pred             EEEe--cCCCCCCCCCEEEec-----------CCCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHH
Confidence            9999  889999999999985           3799999999999999999998     544 678899999999999 6


Q ss_pred             hcccCCC--CEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHH-cCCCEEEcCCCcccccc-----CCCc
Q 025278          145 RSAFSAG--KSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRS-LGADLAIDYTKENIEDL-----PEKF  215 (255)
Q Consensus       145 ~~~~~~g--~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~-----~~~~  215 (255)
                      ..++++|  ++|+|+|++|++|++++|+++.. |+ +|+++++++++++.+++ +|++.++|+.+.++.+.     .+++
T Consensus       153 ~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~  231 (357)
T 2zb4_A          153 KGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGV  231 (357)
T ss_dssp             HSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             hcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCC
Confidence            7899999  99999998899999999999995 88 99999999999999886 99999999876554321     2379


Q ss_pred             cEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          216 DVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       216 d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |++|||+|+ .....++++++ ++|+++.+|...+
T Consensus       232 d~vi~~~G~-~~~~~~~~~l~-~~G~iv~~G~~~~  264 (357)
T 2zb4_A          232 DVYFDNVGG-NISDTVISQMN-ENSHIILCGQISQ  264 (357)
T ss_dssp             EEEEESCCH-HHHHHHHHTEE-EEEEEEECCCGGG
T ss_pred             CEEEECCCH-HHHHHHHHHhc-cCcEEEEECCccc
Confidence            999999996 44556677777 7899999998764

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=1e-39  Score=306.73  Aligned_cols=226  Identities=26%  Similarity=0.332  Sum_probs=197.6

Q ss_pred             EEEEcccCCCccceEEeeccc--CCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            3 AWVYKEYGNSQSVLKFETNVE--VPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         3 a~v~~~~~~~~~~l~~~~~~~--~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      .+.+..+|.+ +.++++ +.+  .|+|++|||+|||.++|||++|++++.|.++     .|.++|||++|+|+++|++|+
T Consensus       212 ~l~~~~~G~~-~~L~~~-~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~-----~~~~lG~E~aG~V~~vG~~V~  284 (795)
T 3slk_A          212 RLEATRPGSL-DGLALV-DEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP-----GVASLGSEGAGVVVETGPGVT  284 (795)
T ss_dssp             CEEESSTTSS-TTEEEC-CCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS-----SCCCSCCCEEEEEEEECSSCC
T ss_pred             EEecCCCCCc-cceEEE-eCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC-----CCccccceeEEEEEEeCCCCC
Confidence            4566778887 788998 665  3678999999999999999999999998764     356799999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGG  159 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga  159 (255)
                      +|++||||++..          .|+|+||++++...++++|+++++++++.++++++|||+++ +..++++|++|||+|+
T Consensus       285 ~~~vGDrV~~~~----------~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~ga  354 (795)
T 3slk_A          285 GLAPGDRVMGMI----------PKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSA  354 (795)
T ss_dssp             SSCTTCEEEECC----------SSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEEST
T ss_pred             cCCCCCEEEEEe----------cCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecC
Confidence            999999999864          59999999999999999999999999999999999999998 5789999999999999


Q ss_pred             CchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeee
Q 025278          160 AGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQK  233 (255)
Q Consensus       160 ~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~  233 (255)
                      +|++|++++|+|+.+ |++|+++++++ |.++++ +|+++++|+++.++.+.      .+|+|+|||++|+.. ...+++
T Consensus       355 aGgvG~~aiqlAk~~-Ga~V~~t~~~~-k~~~l~-lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~gg~~-~~~~l~  430 (795)
T 3slk_A          355 AGGVGMAAIQLARHL-GAEVYATASED-KWQAVE-LSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAGEF-ADASLR  430 (795)
T ss_dssp             TBHHHHHHHHHHHHT-TCCEEEECCGG-GGGGSC-SCGGGEECSSSSTHHHHHHHHSCSSCCSEEEECCCTTT-THHHHT
T ss_pred             CCHHHHHHHHHHHHc-CCEEEEEeChH-Hhhhhh-cChhheeecCChhHHHHHHHHcCCCCeEEEEECCCcHH-HHHHHH
Confidence            999999999999996 99999988765 655555 99999999988776542      348999999999854 566788


Q ss_pred             ccccCCceEEEEeeccC
Q 025278          234 CDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       234 ~~~~~~G~~v~~G~~~~  250 (255)
                      +++ ++|+++.+|....
T Consensus       431 ~l~-~~Gr~v~iG~~~~  446 (795)
T 3slk_A          431 MLP-RGGRFLELGKTDV  446 (795)
T ss_dssp             SCT-TCEEEEECCSTTC
T ss_pred             Hhc-CCCEEEEeccccc
Confidence            888 8999999997653

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=1e-37  Score=267.24  Aligned_cols=226  Identities=24%  Similarity=0.333  Sum_probs=188.4

Q ss_pred             CeEEEEccc--CCC-ccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCC
Q 025278            1 MKAWVYKEY--GNS-QSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGS   77 (255)
Q Consensus         1 mka~v~~~~--~~~-~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~   77 (255)
                      ||||++.++  |.+ ...++++ +.|.|+|++|||+|||.+++||+.|..+ ..     +.++|.++|||++|+|++.  
T Consensus         8 mka~~~~~~~~g~~~~~~l~~~-e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~-----~~~~p~~~g~e~~G~Vv~~--   78 (333)
T 1v3u_A            8 AKSWTLKKHFQGKPTQSDFELK-TVELPPLKNGEVLLEALFLSVDPYMRIA-SK-----RLKEGAVMMGQQVARVVES--   78 (333)
T ss_dssp             EEEEEECC-----CCGGGEEEE-EEECCCCCTTCEEEEEEEEECCTHHHHH-TT-----TCCTTSBCCCCEEEEEEEE--
T ss_pred             ccEEEEeecCCCCCCccceEEE-eCCCCCCCCCEEEEEEEEeccCHHHccc-cC-----cCCCCcccccceEEEEEec--
Confidence            899999985  432 2568898 8999999999999999999999998732 21     2356889999999999995  


Q ss_pred             CCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCC----CCHHh-hhccchhHHHHHHHH-HhcccCCC
Q 025278           78 QVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKN----LSFVE-AASLPLATETAYEGL-ERSAFSAG  151 (255)
Q Consensus        78 ~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~----~~~~~-aa~l~~~~~ta~~~l-~~~~~~~g  151 (255)
                      ++++|++||||++            .|+|+||+++|.+.++++|++    +++++ ++.++++++|||+++ +..++++|
T Consensus        79 ~v~~~~vGdrV~~------------~g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g  146 (333)
T 1v3u_A           79 KNSAFPAGSIVLA------------QSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGG  146 (333)
T ss_dssp             SCTTSCTTCEEEE------------CCCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSS
T ss_pred             CCCCCCCCCEEEe------------cCceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCC
Confidence            6788999999998            378999999999999999997    88877 478899999999999 67899999


Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCC-cccccc-----CCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK-ENIEDL-----PEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~-----~~~~d~vid~~G~~  225 (255)
                      ++|+|+|++|++|++++++++.. |++|+++++++++++.++++|++.++|+.+ .++.+.     .+++|++||++|..
T Consensus       147 ~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~  225 (333)
T 1v3u_A          147 ETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGE  225 (333)
T ss_dssp             CEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCHH
T ss_pred             CEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCChH
Confidence            99999998899999999999985 899999999999999999999999999876 443321     24799999999975


Q ss_pred             cceeeeeeccccCCceEEEEeeccC
Q 025278          226 CISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       226 ~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      . ...++++++ ++|+++.+|..++
T Consensus       226 ~-~~~~~~~l~-~~G~~v~~g~~~~  248 (333)
T 1v3u_A          226 F-LNTVLSQMK-DFGKIAICGAISV  248 (333)
T ss_dssp             H-HHHHHTTEE-EEEEEEECCCCC-
T ss_pred             H-HHHHHHHHh-cCCEEEEEecccc
Confidence            3 455567777 7899999998654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=1.1e-36  Score=262.13  Aligned_cols=233  Identities=26%  Similarity=0.366  Sum_probs=187.7

Q ss_pred             CeEEEEccc--CCCcc-ceEEee-cccCCC-CCCCeEEEEEeEeecChHhHHHHcCCCCCCC--CCCCcccccceEEEEE
Q 025278            1 MKAWVYKEY--GNSQS-VLKFET-NVEVPS-LREDQVLIKVVAAALNPIDFKRMLGAFSATD--SPLPTIPGYDVAGVVE   73 (255)
Q Consensus         1 mka~v~~~~--~~~~~-~l~~~~-~~~~p~-~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~--~~~p~~~G~e~~G~V~   73 (255)
                      ||++++...  +.+.. .+++++ +.+.|+ |++|||+||+.++++|+.|. .+.|.++...  ..+|.++|||++|+++
T Consensus         5 mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~   83 (345)
T 2j3h_A            5 NKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGV   83 (345)
T ss_dssp             EEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEE
T ss_pred             ceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceE
Confidence            689988876  54422 477752 467776 89999999999999888875 4445432111  2468999999999999


Q ss_pred             E--eCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCc--eEeCCC---CCCHHhhhccchhHHHHHHHH-Hh
Q 025278           74 K--VGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENL--LALKPK---NLSFVEAASLPLATETAYEGL-ER  145 (255)
Q Consensus        74 ~--~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~lp~---~~~~~~aa~l~~~~~ta~~~l-~~  145 (255)
                      +  +|+++++|++||||++            .|+|+||++++...  ++++|+   .++++ ++.++++++|||+++ +.
T Consensus        84 ~GvV~~~v~~~~vGdrV~~------------~g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~  150 (345)
T 2j3h_A           84 SRIIESGHPDYKKGDLLWG------------IVAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEV  150 (345)
T ss_dssp             EEEEEECSTTCCTTCEEEE------------EEESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTT
T ss_pred             EEEEecCCCCCCCCCEEEe------------ecCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHH
Confidence            9  9999999999999997            37899999998876  999996   35554 677889999999999 57


Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCc-ccccc-----CCCccEE
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKE-NIEDL-----PEKFDVV  218 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~-~~~~~-----~~~~d~v  218 (255)
                      .++++|++|||+|++|++|++++|+|+.. |++|+++++++++++.++ ++|++.++|+.+. ++.+.     .+++|++
T Consensus       151 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~v  229 (345)
T 2j3h_A          151 CSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIY  229 (345)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEE
T ss_pred             hCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEE
Confidence            89999999999998899999999999995 899999999999999998 7999999988653 33221     2479999


Q ss_pred             EECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          219 FDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       219 id~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ||++|+ .....+..+++ ++|+++.+|..++
T Consensus       230 i~~~g~-~~~~~~~~~l~-~~G~~v~~G~~~~  259 (345)
T 2j3h_A          230 FENVGG-KMLDAVLVNMN-MHGRIAVCGMISQ  259 (345)
T ss_dssp             EESSCH-HHHHHHHTTEE-EEEEEEECCCGGG
T ss_pred             EECCCH-HHHHHHHHHHh-cCCEEEEEccccc
Confidence            999998 35566677777 7899999998764

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.96  E-value=9.8e-29  Score=253.67  Aligned_cols=220  Identities=23%  Similarity=0.291  Sum_probs=183.2

Q ss_pred             EcccCCCccceEEeecccCCC-CC--CCeEEEEEeEeecChHhHHHHcCCCCCC-----CCCCCcccccceEEEEEEeCC
Q 025278            6 YKEYGNSQSVLKFETNVEVPS-LR--EDQVLIKVVAAALNPIDFKRMLGAFSAT-----DSPLPTIPGYDVAGVVEKVGS   77 (255)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~p~-~~--~~eV~V~v~~~~i~~~D~~~~~g~~~~~-----~~~~p~~~G~e~~G~V~~~G~   77 (255)
                      ...+|.. +.+.|. +.+... +.  ++||+|||.++|+|+.|+.+..|.++..     ....|.++|+|++|+|.    
T Consensus      1535 ~~~~g~l-~sl~~~-~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~---- 1608 (2512)
T 2vz8_A         1535 VLSRGDL-SSIRWV-CSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA---- 1608 (2512)
T ss_dssp             ESSTTCT-TSEEEE-ECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----
T ss_pred             ccCCCCc-CceEEE-ecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----
Confidence            3455665 667887 555433 33  7999999999999999999999976421     12346789999999873    


Q ss_pred             CCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEE
Q 025278           78 QVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILV  156 (255)
Q Consensus        78 ~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI  156 (255)
                            +||||++...         .|+|+||+++|.+.++++|+++++++||.++++++|||+++ +..++++|++|||
T Consensus      1609 ------vGdrV~g~~~---------~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI 1673 (2512)
T 2vz8_A         1609 ------SGRRVMGMVP---------AEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLI 1673 (2512)
T ss_dssp             ------TSCCEEEECS---------SCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred             ------cCCEEEEeec---------CCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence                  7999998752         58999999999999999999999999999999999999999 5688999999999


Q ss_pred             EcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCEEEcCCCcccccc------CCCccEEEECCCCcc
Q 025278          157 LGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADLAIDYTKENIEDL------PEKFDVVFDAVGKMC  226 (255)
Q Consensus       157 ~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~  226 (255)
                      +||+|++|++++|+|+.+ |++|++++.+++|++++++    +|+++++++++.++.+.      .+|+|+|||++|+ .
T Consensus      1674 ~gaaGgVG~aAiqlAk~~-Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~g~-~ 1751 (2512)
T 2vz8_A         1674 HSGSGGVGQAAIAIALSR-GCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAE-E 1751 (2512)
T ss_dssp             TTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCEEEEEECCCH-H
T ss_pred             EeCChHHHHHHHHHHHHc-CCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCceEEEECCCc-h
Confidence            999999999999999995 9999999999999999985    78999999987665432      2479999999984 4


Q ss_pred             ceeeeeeccccCCceEEEEeecc
Q 025278          227 ISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       227 ~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ....+.++++ ++|+++.+|...
T Consensus      1752 ~l~~~l~~L~-~~Gr~V~iG~~~ 1773 (2512)
T 2vz8_A         1752 KLQASVRCLA-QHGRFLEIGKFD 1773 (2512)
T ss_dssp             HHHHHHTTEE-EEEEEEECCCHH
T ss_pred             HHHHHHHhcC-CCcEEEEeeccc
Confidence            4566677777 789999999643

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.80  E-value=9.8e-20  Score=144.18  Aligned_cols=132  Identities=26%  Similarity=0.317  Sum_probs=102.1

Q ss_pred             CceEeCCCCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH
Q 025278          115 NLLALKPKNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR  193 (255)
Q Consensus       115 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~  193 (255)
                      +.++++|+++++++++.+++++.|||+++. ..++++|++|+|+|++|++|++++++++.. |++|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Confidence            467899999999999999999999999995 578999999999999999999999999985 899999999999999999


Q ss_pred             HcCCCEEEcCCCcccccc------CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          194 SLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       194 ~~g~~~v~~~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ++|++.++|..+.+..+.      .+++|++||++|. .....+.++++ ++|+++.+|..+
T Consensus        81 ~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~-~~~~~~~~~l~-~~G~~v~~g~~~  140 (198)
T 1pqw_A           81 RLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG-EAIQRGVQILA-PGGRFIELGKKD  140 (198)
T ss_dssp             TTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEE-EEEEEEECSCGG
T ss_pred             HcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCch-HHHHHHHHHhc-cCCEEEEEcCCC
Confidence            999998888766543221      2379999999985 34455667777 789999999876

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.05  E-value=8.2e-13  Score=115.40  Aligned_cols=181  Identities=20%  Similarity=0.212  Sum_probs=125.3

Q ss_pred             cccccceEEEEEEeCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           62 TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        62 ~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      ...|++.++.|..+|++++++.+|++++.-.-..........|++++|+..+...++.+|+.++.+.++. ..+..++|.
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~  153 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSA  153 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHH
Confidence            3489999999999999999999999973210000000001136678888777777888888777665443 234446777


Q ss_pred             HHHhcc----cCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhH-HHHHHcCCCEEEcCCCccccccCCCc
Q 025278          142 GLERSA----FSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKL-DLLRSLGADLAIDYTKENIEDLPEKF  215 (255)
Q Consensus       142 ~l~~~~----~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~  215 (255)
                      ++....    -.+|++|+|+| +|++|.++++.++.. |+ +|++++++.+|. ++++++|++ ++++.  ++.+...++
T Consensus       154 av~~a~~~~~~l~g~~VlIiG-aG~iG~~~a~~l~~~-G~~~V~v~~r~~~ra~~la~~~g~~-~~~~~--~l~~~l~~a  228 (404)
T 1gpj_A          154 AVELAERELGSLHDKTVLVVG-AGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDLGGE-AVRFD--ELVDHLARS  228 (404)
T ss_dssp             HHHHHHHHHSCCTTCEEEEES-CCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHHTCE-ECCGG--GHHHHHHTC
T ss_pred             HHHHHHHHhccccCCEEEEEC-hHHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHcCCc-eecHH--hHHHHhcCC
Confidence            775432    25899999999 799999999999986 77 899999999887 677889976 34332  333334589


Q ss_pred             cEEEECCCCcccee--eeeec--c--ccCCceEEEEeecc
Q 025278          216 DVVFDAVGKMCISI--VYQKC--D--KFQEKSLINFGLFR  249 (255)
Q Consensus       216 d~vid~~G~~~~~~--~~~~~--~--~~~~G~~v~~G~~~  249 (255)
                      |+||+|+|......  ..+..  +  + +++.+++++...
T Consensus       229 DvVi~at~~~~~~~~~~~l~~~~lk~r-~~~~~v~vdia~  267 (404)
T 1gpj_A          229 DVVVSATAAPHPVIHVDDVREALRKRD-RRSPILIIDIAN  267 (404)
T ss_dssp             SEEEECCSSSSCCBCHHHHHHHHHHCS-SCCCEEEEECCS
T ss_pred             CEEEEccCCCCceecHHHHHHHHHhcc-CCCCEEEEEccC
Confidence            99999999665432  22322  2  3 467888888765

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.82  E-value=1.3e-08  Score=90.44  Aligned_cols=107  Identities=24%  Similarity=0.303  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHhcc--cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccC
Q 025278          135 ATETAYEGLERSA--FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLP  212 (255)
Q Consensus       135 ~~~ta~~~l~~~~--~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  212 (255)
                      ...++|+++++..  ..+|++|+|+| .|.+|..+++.++.+ |++|+++++++++++.++++|++ +++     ..+..
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG-~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~~Ga~-~~~-----l~e~l  327 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICG-YGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMMEGFD-VVT-----VEEAI  327 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCE-ECC-----HHHHG
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEc-cCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCE-Eec-----HHHHH
Confidence            3445677775443  78999999999 899999999999996 89999999999999899999986 322     22334


Q ss_pred             CCccEEEECCCCcccee-eeeeccccCCceEEEEeeccC
Q 025278          213 EKFDVVFDAVGKMCISI-VYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       213 ~~~d~vid~~G~~~~~~-~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +++|+||+++|...... ..+..++ ++|+++.+|....
T Consensus       328 ~~aDvVi~atgt~~~i~~~~l~~mk-~ggilvnvG~~~~  365 (494)
T 3ce6_A          328 GDADIVVTATGNKDIIMLEHIKAMK-DHAILGNIGHFDN  365 (494)
T ss_dssp             GGCSEEEECSSSSCSBCHHHHHHSC-TTCEEEECSSSGG
T ss_pred             hCCCEEEECCCCHHHHHHHHHHhcC-CCcEEEEeCCCCC
Confidence            68999999999776554 4556666 7899999998654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.79  E-value=4.6e-09  Score=90.27  Aligned_cols=97  Identities=18%  Similarity=0.182  Sum_probs=73.1

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE--EEcCCCccccccCCCccEEEECCCCccc-
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL--AIDYTKENIEDLPEKFDVVFDAVGKMCI-  227 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~d~vid~~G~~~~-  227 (255)
                      +++|+|+| +|++|+++++.++.+ |++|++++++++|++.+++++++.  +++++..++.+...++|+||||+|.+.. 
T Consensus       167 ~~~VlViG-aGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~  244 (361)
T 1pjc_A          167 PGKVVILG-GGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  244 (361)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCC
Confidence            48999999 599999999999996 889999999999999988776443  3444433444434589999999986542 


Q ss_pred             -----eeeeeeccccCCceEEEEeeccC
Q 025278          228 -----SIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       228 -----~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                           .......++ ++|+++.++...+
T Consensus       245 ~~~li~~~~~~~~~-~g~~ivdv~~~~g  271 (361)
T 1pjc_A          245 APILVPASLVEQMR-TGSVIVDVAVDQG  271 (361)
T ss_dssp             CCCCBCHHHHTTSC-TTCEEEETTCTTC
T ss_pred             CCeecCHHHHhhCC-CCCEEEEEecCCC
Confidence                 222345566 7899999988653

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.67  E-value=3.7e-08  Score=85.31  Aligned_cols=97  Identities=24%  Similarity=0.301  Sum_probs=72.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCC-----------------------
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTK-----------------------  205 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~-----------------------  205 (255)
                      ++++|+|+| +|.+|++++++|+.+ |++|+++++++++++.++++|++.+ ++..+                       
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          171 PPARVLVFG-VGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            689999999 899999999999996 8899999999999999989998765 23311                       


Q ss_pred             ccccccCCCccEEEECC---CCcc--c-eeeeeeccccCCceEEEEeecc
Q 025278          206 ENIEDLPEKFDVVFDAV---GKMC--I-SIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       206 ~~~~~~~~~~d~vid~~---G~~~--~-~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ..+.+..+++|+||+|+   |.+.  . ....++.++ ++++++.++...
T Consensus       249 ~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk-~g~vivdva~~~  297 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMK-PGSVIIDLAVEA  297 (384)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSC-TTCEEEETTGGG
T ss_pred             HHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCC-CCCEEEEEecCC
Confidence            00333345899999999   5322  1 123455566 789999999754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.63  E-value=4.3e-08  Score=84.68  Aligned_cols=97  Identities=20%  Similarity=0.207  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCCE-EEcCCCccccccCCCccEEEECCCCccc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADL-AIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~-v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      +|++|+|+| +|.+|+.+++.++.+ |++|+++++++++++.+++ +|++. +......++.+..+++|+||+|++.+..
T Consensus       167 ~g~~V~ViG-~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~  244 (377)
T 2vhw_A          167 EPADVVVIG-AGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA  244 (377)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            579999999 699999999999996 8899999999999988876 77653 2222223333444578999999986543


Q ss_pred             ------eeeeeeccccCCceEEEEeecc
Q 025278          228 ------SIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       228 ------~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                            ....+..++ ++|+++.+|...
T Consensus       245 ~t~~li~~~~l~~mk-~g~~iV~va~~~  271 (377)
T 2vhw_A          245 KAPKLVSNSLVAHMK-PGAVLVDIAIDQ  271 (377)
T ss_dssp             CCCCCBCHHHHTTSC-TTCEEEEGGGGT
T ss_pred             CCcceecHHHHhcCC-CCcEEEEEecCC
Confidence                  233345566 789999999654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.55  E-value=9.1e-08  Score=82.42  Aligned_cols=98  Identities=21%  Similarity=0.253  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCCEEEcC-CCccccccCCCccEEEECCCCccc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADLAIDY-TKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~v~~~-~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      .+++|+|+| +|++|+.+++.++.+ |++|+++++++++++.+++ +|.+...+. +..++.+..+++|+||+|+|....
T Consensus       165 ~~~~V~ViG-aG~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~  242 (369)
T 2eez_A          165 APASVVILG-GGTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGA  242 (369)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC----
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcc
Confidence            468999999 599999999999996 8999999999999888765 777643332 223333444579999999996531


Q ss_pred             ------eeeeeeccccCCceEEEEeeccC
Q 025278          228 ------SIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       228 ------~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                            ....+..++ ++|+++.+|...+
T Consensus       243 ~~~~li~~~~l~~mk-~gg~iV~v~~~~g  270 (369)
T 2eez_A          243 KAPKLVTRDMLSLMK-EGAVIVDVAVDQG  270 (369)
T ss_dssp             ---CCSCHHHHTTSC-TTCEEEECC----
T ss_pred             ccchhHHHHHHHhhc-CCCEEEEEecCCC
Confidence                  233355556 7899999987653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.55  E-value=6.8e-08  Score=71.85  Aligned_cols=106  Identities=13%  Similarity=0.108  Sum_probs=76.2

Q ss_pred             HHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH-HHHcCCCEEEcCCCccccccCCCcc
Q 025278          138 TAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL-LRSLGADLAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       138 ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~~d  216 (255)
                      .++++++......+++|+|+| +|.+|.+.++.++. .|.+++++++++++.+. +++++.+.. ...  +..+..+++|
T Consensus         8 v~~~a~~~~~~~~~~~v~iiG-~G~iG~~~a~~l~~-~g~~v~v~~r~~~~~~~~a~~~~~~~~-~~~--~~~~~~~~~D   82 (144)
T 3oj0_A            8 IPSIVYDIVRKNGGNKILLVG-NGMLASEIAPYFSY-PQYKVTVAGRNIDHVRAFAEKYEYEYV-LIN--DIDSLIKNND   82 (144)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEC-CSHHHHHHGGGCCT-TTCEEEEEESCHHHHHHHHHHHTCEEE-ECS--CHHHHHHTCS
T ss_pred             HHHHHHHHHHhccCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHHHHhCCceE-eec--CHHHHhcCCC
Confidence            377777766556699999999 79999999998887 48888888999988765 567875432 221  2233345799


Q ss_pred             EEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          217 VVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       217 ~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +||+|++....... ...++ +++.++.+|.+..
T Consensus        83 ivi~at~~~~~~~~-~~~l~-~g~~vid~~~p~~  114 (144)
T 3oj0_A           83 VIITATSSKTPIVE-ERSLM-PGKLFIDLGNPPN  114 (144)
T ss_dssp             EEEECSCCSSCSBC-GGGCC-TTCEEEECCSSCS
T ss_pred             EEEEeCCCCCcEee-HHHcC-CCCEEEEccCCcc
Confidence            99999997654333 24555 5788888887654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.45  E-value=2.1e-07  Score=80.88  Aligned_cols=97  Identities=16%  Similarity=0.244  Sum_probs=71.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE-cCC-------------Cc--------c
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI-DYT-------------KE--------N  207 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~-~~~-------------~~--------~  207 (255)
                      ++++|+|+| +|.+|+.++++|+.+ |++|+++++++++++.++++|++.+. +..             ..        .
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          171 PPAKVMVIG-AGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            588999999 899999999999996 88999999999999999999987542 211             00        1


Q ss_pred             ccccCCCccEEEECCCCc-----cc-eeeeeeccccCCceEEEEeecc
Q 025278          208 IEDLPEKFDVVFDAVGKM-----CI-SIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       208 ~~~~~~~~d~vid~~G~~-----~~-~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +.+...++|+||++++.+     .. ....++.++ ++++++.++...
T Consensus       249 l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk-~g~vIVdva~~~  295 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMK-AGSVIVDLAAQN  295 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSC-TTCEEEETTGGG
T ss_pred             HHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCC-CCcEEEEEcCCC
Confidence            233334789999996432     11 123455566 789999999753

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.43  E-value=9.7e-07  Score=71.24  Aligned_cols=104  Identities=11%  Similarity=0.028  Sum_probs=72.5

Q ss_pred             HHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc----CC--C-EEEcCCCcccccc
Q 025278          139 AYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL----GA--D-LAIDYTKENIEDL  211 (255)
Q Consensus       139 a~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~----g~--~-~v~~~~~~~~~~~  211 (255)
                      +.+.+....++++++||..| +| .|..+..+++.  +.++++++.+++.++.+++.    +.  . .++..+-.+....
T Consensus        80 ~~~~~~~~~~~~~~~vldiG-~G-~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  155 (248)
T 2yvl_A           80 SFYIALKLNLNKEKRVLEFG-TG-SGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP  155 (248)
T ss_dssp             HHHHHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC
T ss_pred             HHHHHHhcCCCCCCEEEEeC-CC-ccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC
Confidence            33556677889999999999 67 69999999986  78999999999998888653    42  1 1222211111101


Q ss_pred             CCCccEEEECCCCc-cceeeeeeccccCCceEEEEee
Q 025278          212 PEKFDVVFDAVGKM-CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       212 ~~~~d~vid~~G~~-~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      .+++|+||...+.. .....+.+.++ ++|+++++-.
T Consensus       156 ~~~~D~v~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~  191 (248)
T 2yvl_A          156 EGIFHAAFVDVREPWHYLEKVHKSLM-EGAPVGFLLP  191 (248)
T ss_dssp             TTCBSEEEECSSCGGGGHHHHHHHBC-TTCEEEEEES
T ss_pred             CCcccEEEECCcCHHHHHHHHHHHcC-CCCEEEEEeC
Confidence            24799999987755 44555567777 8899888754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.25  E-value=5.3e-06  Score=66.48  Aligned_cols=100  Identities=24%  Similarity=0.235  Sum_probs=70.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC-CEE-EcCCCccccccCCCccEEEECCCCccc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA-DLA-IDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~-~~v-~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      .+++|+|+||+|.+|...+..+... |.+|+++++++++.+.+.+.+. ..+ .|.. +.+.+..+++|+||+++|....
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~D~vi~~ag~~~~   97 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNK-GHEPVAMVRNEEQGPELRERGASDIVVANLE-EDFSHAFASIDAVVFAAGSGPH   97 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHTTCSEEEECCTT-SCCGGGGTTCSEEEECCCCCTT
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhC-CCeEEEEECChHHHHHHHhCCCceEEEcccH-HHHHHHHcCCCEEEECCCCCCC
Confidence            5789999999999999998888874 9999999999999888777676 433 2333 3444445689999999994321


Q ss_pred             -------------eeeeeecc-ccCCceEEEEeeccCC
Q 025278          228 -------------SIVYQKCD-KFQEKSLINFGLFRQE  251 (255)
Q Consensus       228 -------------~~~~~~~~-~~~~G~~v~~G~~~~~  251 (255)
                                   .....+.+ +...+++++++.++..
T Consensus        98 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~  135 (236)
T 3e8x_A           98 TGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTV  135 (236)
T ss_dssp             SCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCS
T ss_pred             CCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence                         11112222 2124789998887653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.22  E-value=5.8e-06  Score=71.69  Aligned_cols=103  Identities=19%  Similarity=0.228  Sum_probs=77.9

Q ss_pred             HHHHHHh--cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCcc
Q 025278          139 AYEGLER--SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       139 a~~~l~~--~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d  216 (255)
                      .+.++.+  ...-.|++|+|.| .|.+|..+++.++.+ |++|+++++++.+...+...|... .     ++.+.....|
T Consensus       206 ~~~gi~rat~~~L~GktV~ViG-~G~IGk~vA~~Lra~-Ga~Viv~D~dp~ra~~A~~~G~~v-~-----~Leeal~~AD  277 (435)
T 3gvp_A          206 ILDGLKRTTDMMFGGKQVVVCG-YGEVGKGCCAALKAM-GSIVYVTEIDPICALQACMDGFRL-V-----KLNEVIRQVD  277 (435)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCEE-C-----CHHHHTTTCS
T ss_pred             HHHHHHHhhCceecCCEEEEEe-eCHHHHHHHHHHHHC-CCEEEEEeCChhhhHHHHHcCCEe-c-----cHHHHHhcCC
Confidence            4455533  2356899999999 999999999999996 999999999988877777777532 1     2445566899


Q ss_pred             EEEECCCCcccee-eeeeccccCCceEEEEeeccC
Q 025278          217 VVFDAVGKMCISI-VYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       217 ~vid~~G~~~~~~-~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +|+.|+|...... ..+..++ +++.++.+|....
T Consensus       278 IVi~atgt~~lI~~e~l~~MK-~gailINvgrg~~  311 (435)
T 3gvp_A          278 IVITCTGNKNVVTREHLDRMK-NSCIVCNMGHSNT  311 (435)
T ss_dssp             EEEECSSCSCSBCHHHHHHSC-TTEEEEECSSTTT
T ss_pred             EEEECCCCcccCCHHHHHhcC-CCcEEEEecCCCc
Confidence            9999988665444 4456666 6788999987654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.21  E-value=1e-06  Score=75.51  Aligned_cols=97  Identities=23%  Similarity=0.270  Sum_probs=69.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE-c--------CC-----------Ccccc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI-D--------YT-----------KENIE  209 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~-~--------~~-----------~~~~~  209 (255)
                      ++.+|+|+| .|.+|+.+++.++.+ |++|+++++++++++.++++|++.+- +        +.           ..++.
T Consensus       183 ~~~kV~ViG-~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLG-VGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEES-CSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            678999999 899999999999997 89999999999999999999986431 0        00           01223


Q ss_pred             ccCCCccEEEECCCCcc--c----eeeeeeccccCCceEEEEeecc
Q 025278          210 DLPEKFDVVFDAVGKMC--I----SIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       210 ~~~~~~d~vid~~G~~~--~----~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +..+++|+||.++..+.  .    .....+.++ +++.++.++.-.
T Consensus       261 e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~Mk-pGsVIVDvA~d~  305 (381)
T 3p2y_A          261 DAITKFDIVITTALVPGRPAPRLVTAAAATGMQ-PGSVVVDLAGET  305 (381)
T ss_dssp             HHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSC-TTCEEEETTGGG
T ss_pred             HHHhcCCEEEECCCCCCcccceeecHHHHhcCC-CCcEEEEEeCCC
Confidence            33468999999974321  1    122344455 677888776543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.19  E-value=2.3e-06  Score=73.90  Aligned_cols=95  Identities=23%  Similarity=0.294  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEc-------------CCC-----------
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID-------------YTK-----------  205 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~-------------~~~-----------  205 (255)
                      ++.+|+|+| +|.+|+.++++++.+ |++|++.++++++++.++++|++.+..             +..           
T Consensus       189 ~~~kV~ViG-~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          189 PAAKIFVMG-AGVAGLQAIATARRL-GAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            578999999 899999999999996 999999999999999999999864321             100           


Q ss_pred             ccccccCCCccEEEECCCCcc------ceeeeeeccccCCceEEEEee
Q 025278          206 ENIEDLPEKFDVVFDAVGKMC------ISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       206 ~~~~~~~~~~d~vid~~G~~~------~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      .++.+..++.|+||.|+..+.      ......+.++ ++..++.++.
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk-~GsVIVDvA~  313 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMK-PGSVVVDLAV  313 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSC-TTCEEEETTG
T ss_pred             hHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCC-CCCEEEEEeC
Confidence            112223458999999965332      1222345555 6778887765

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.14  E-value=1e-05  Score=71.33  Aligned_cols=92  Identities=24%  Similarity=0.285  Sum_probs=71.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccce
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~  228 (255)
                      -.|++++|+| .|++|..+++.++.. |++|+++++++.+...+...|++. .     +..+....+|+++++.|.....
T Consensus       263 L~GKtVvVtG-aGgIG~aiA~~Laa~-GA~Viv~D~~~~~a~~Aa~~g~dv-~-----~lee~~~~aDvVi~atG~~~vl  334 (488)
T 3ond_A          263 IAGKVAVVAG-YGDVGKGCAAALKQA-GARVIVTEIDPICALQATMEGLQV-L-----TLEDVVSEADIFVTTTGNKDII  334 (488)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCEE-C-----CGGGTTTTCSEEEECSSCSCSB
T ss_pred             ccCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHhCCcc-C-----CHHHHHHhcCEEEeCCCChhhh
Confidence            5799999999 789999999999996 999999999998888887777632 1     2234456899999999976655


Q ss_pred             ee-eeeccccCCceEEEEeecc
Q 025278          229 IV-YQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       229 ~~-~~~~~~~~~G~~v~~G~~~  249 (255)
                      .. ....++ +++.++.+|.+.
T Consensus       335 ~~e~l~~mk-~gaiVvNaG~~~  355 (488)
T 3ond_A          335 MLDHMKKMK-NNAIVCNIGHFD  355 (488)
T ss_dssp             CHHHHTTSC-TTEEEEESSSTT
T ss_pred             hHHHHHhcC-CCeEEEEcCCCC
Confidence            44 455565 678888888753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.09  E-value=1.1e-05  Score=67.02  Aligned_cols=95  Identities=16%  Similarity=0.206  Sum_probs=71.0

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      --.|++|+|+| .|.+|..+++.++.. |.+|++.+++.++.+.++++|+.. ++.  .++.+.....|+|+.++.....
T Consensus       152 ~l~g~~v~IiG-~G~iG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~-~~~--~~l~~~l~~aDvVi~~~p~~~i  226 (293)
T 3d4o_A          152 TIHGANVAVLG-LGRVGMSVARKFAAL-GAKVKVGARESDLLARIAEMGMEP-FHI--SKAAQELRDVDVCINTIPALVV  226 (293)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTSEE-EEG--GGHHHHTTTCSEEEECCSSCCB
T ss_pred             CCCCCEEEEEe-eCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHCCCee-cCh--hhHHHHhcCCCEEEECCChHHh
Confidence            34789999999 899999999999985 899999999998887777888753 322  2334445689999999975433


Q ss_pred             eeeeeeccccCCceEEEEeec
Q 025278          228 SIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       228 ~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ....+..++ +++.++.++..
T Consensus       227 ~~~~l~~mk-~~~~lin~ar~  246 (293)
T 3d4o_A          227 TANVLAEMP-SHTFVIDLASK  246 (293)
T ss_dssp             CHHHHHHSC-TTCEEEECSST
T ss_pred             CHHHHHhcC-CCCEEEEecCC
Confidence            233344555 67888888863

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.04  E-value=3.1e-06  Score=63.57  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=66.6

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEE-cCCCcc-cccc-CCCccEEEEC
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAI-DYTKEN-IEDL-PEKFDVVFDA  221 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~-~~~~~~-~~~~-~~~~d~vid~  221 (255)
                      ....++++|+|+| +|.+|...++.++.. |.+|+++++++++.+.++ +.|...+. +..+.+ +.+. .+++|+||.+
T Consensus        14 ~~~~~~~~v~IiG-~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~   91 (155)
T 2g1u_A           14 SKKQKSKYIVIFG-CGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF   91 (155)
T ss_dssp             ---CCCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred             hcccCCCcEEEEC-CCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence            3456788999999 799999999999885 899999999999988777 67765432 222211 2221 3579999999


Q ss_pred             CCCccceeeeeeccccCCceEEEEee
Q 025278          222 VGKMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       222 ~G~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      ++.......+....+...+....+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~iv~~  117 (155)
T 2g1u_A           92 TNDDSTNFFISMNARYMFNVENVIAR  117 (155)
T ss_dssp             SSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             eCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            99766555554444422344333333

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.03  E-value=6.1e-06  Score=58.42  Aligned_cols=76  Identities=25%  Similarity=0.328  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHHHcCCCEE-EcCCC-ccccccCCCccEEEECCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLRSLGADLA-IDYTK-ENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~-~~~~~~~~~~d~vid~~G~~~  226 (255)
                      .+++|+|+|+ |.+|...++.+... | .+++++++++++.+.+++.+...+ .|..+ ..+.+..+++|+||+++|...
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~-g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~   81 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTS-SNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL   81 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHC-SSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh
Confidence            3568999996 99999999998884 7 889999999999888876665443 23222 223334568999999998554


Q ss_pred             c
Q 025278          227 I  227 (255)
Q Consensus       227 ~  227 (255)
                      .
T Consensus        82 ~   82 (118)
T 3ic5_A           82 T   82 (118)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.00  E-value=2.5e-05  Score=65.19  Aligned_cols=95  Identities=15%  Similarity=0.276  Sum_probs=71.0

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      --.|++|+|+| .|.+|..+++.++.. |.+|++.+++.++.+.++++|.. +++.  .+..+..++.|+|+.+++....
T Consensus       154 ~l~g~~v~IiG-~G~iG~~~a~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~-~~~~--~~l~~~l~~aDvVi~~~p~~~i  228 (300)
T 2rir_A          154 TIHGSQVAVLG-LGRTGMTIARTFAAL-GANVKVGARSSAHLARITEMGLV-PFHT--DELKEHVKDIDICINTIPSMIL  228 (300)
T ss_dssp             CSTTSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCE-EEEG--GGHHHHSTTCSEEEECCSSCCB
T ss_pred             CCCCCEEEEEc-ccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCCe-EEch--hhHHHHhhCCCEEEECCChhhh
Confidence            34689999999 899999999999985 89999999999888777777864 3322  2344455789999999986433


Q ss_pred             eeeeeeccccCCceEEEEeec
Q 025278          228 SIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       228 ~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ....+..++ +++.++.++..
T Consensus       229 ~~~~~~~mk-~g~~lin~a~g  248 (300)
T 2rir_A          229 NQTVLSSMT-PKTLILDLASR  248 (300)
T ss_dssp             CHHHHTTSC-TTCEEEECSST
T ss_pred             CHHHHHhCC-CCCEEEEEeCC
Confidence            333344455 67888888763

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.91  E-value=2.8e-05  Score=67.62  Aligned_cols=95  Identities=22%  Similarity=0.206  Sum_probs=72.3

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      ..-.|++|+|+| .|.+|..+++.++.+ |++|+++++++.+...+...|... .     ++.+..+..|+|+.++|...
T Consensus       243 ~~L~GKTVgVIG-~G~IGr~vA~~lraf-Ga~Viv~d~dp~~a~~A~~~G~~v-v-----~LeElL~~ADIVv~atgt~~  314 (464)
T 3n58_A          243 VMMAGKVAVVCG-YGDVGKGSAQSLAGA-GARVKVTEVDPICALQAAMDGFEV-V-----TLDDAASTADIVVTTTGNKD  314 (464)
T ss_dssp             CCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHTTCEE-C-----CHHHHGGGCSEEEECCSSSS
T ss_pred             CcccCCEEEEEC-cCHHHHHHHHHHHHC-CCEEEEEeCCcchhhHHHhcCcee-c-----cHHHHHhhCCEEEECCCCcc
Confidence            356899999999 999999999999996 999999999887776666677643 2     23344557899999998665


Q ss_pred             ce-eeeeeccccCCceEEEEeeccC
Q 025278          227 IS-IVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       227 ~~-~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .. ...+..++ +++.++.+|.+..
T Consensus       315 lI~~e~l~~MK-~GAILINvGRgdv  338 (464)
T 3n58_A          315 VITIDHMRKMK-DMCIVGNIGHFDN  338 (464)
T ss_dssp             SBCHHHHHHSC-TTEEEEECSSSTT
T ss_pred             ccCHHHHhcCC-CCeEEEEcCCCCc
Confidence            43 23355565 6788888887664

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.88  E-value=4.2e-05  Score=63.38  Aligned_cols=99  Identities=19%  Similarity=0.204  Sum_probs=70.4

Q ss_pred             hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc----CCC--EEEcCCCccccccCCCccEE
Q 025278          145 RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL----GAD--LAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       145 ~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~----g~~--~v~~~~~~~~~~~~~~~d~v  218 (255)
                      .+++++|++||.+| +|+.++.++.+|+. .+++|++++.+++.++.+++.    |.+  .++..+..++.  .+.+|+|
T Consensus       117 la~l~~g~rVLDIG-cG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV  192 (298)
T 3fpf_A          117 LGRFRRGERAVFIG-GGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVL  192 (298)
T ss_dssp             HTTCCTTCEEEEEC-CCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEE
T ss_pred             HcCCCCcCEEEEEC-CCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEE
Confidence            46789999999999 88877887888886 499999999999998888653    532  22333332332  3579999


Q ss_pred             EECCCCc---cceeeeeeccccCCceEEEEeec
Q 025278          219 FDAVGKM---CISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       219 id~~G~~---~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      |-+...+   .....+.+.++ ++|+++.....
T Consensus       193 ~~~a~~~d~~~~l~el~r~Lk-PGG~Lvv~~~~  224 (298)
T 3fpf_A          193 MVAALAEPKRRVFRNIHRYVD-TETRIIYRTYT  224 (298)
T ss_dssp             EECTTCSCHHHHHHHHHHHCC-TTCEEEEEECC
T ss_pred             EECCCccCHHHHHHHHHHHcC-CCcEEEEEcCc
Confidence            9765533   23444566677 89999987643

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.86  E-value=2.4e-05  Score=61.87  Aligned_cols=94  Identities=15%  Similarity=0.056  Sum_probs=63.1

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCccccccCCCccEEEECCCCcc-----
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKENIEDLPEKFDVVFDAVGKMC-----  226 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~d~vid~~G~~~-----  226 (255)
                      +|||+||+|.+|...+..+... |.+|+++++++++.+.+...+...+ .|..+... +..+++|+||.++|...     
T Consensus         2 kilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~   79 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRR-GHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSVPWGSGRG   79 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCCCTTSSCT
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC-CCEEEEEEecccccccccCCCceEEecccccccH-hhcccCCEEEECCccCCCcchh
Confidence            6999999999999999888874 9999999999988776544444332 22222222 33468999999998631     


Q ss_pred             -----ceeeeeeccccCCceEEEEeec
Q 025278          227 -----ISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       227 -----~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                           .....++.++..+++++.++..
T Consensus        80 ~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           80 YLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             hHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence                 1111223333234889998654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.83  E-value=7.1e-05  Score=65.06  Aligned_cols=93  Identities=22%  Similarity=0.214  Sum_probs=71.4

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      .-.|++|+|.| .|.+|..+++.++.+ |++|+++++++.+...+...|...+      +..+..+..|+|+.+.+....
T Consensus       208 ~L~GktVgIiG-~G~IG~~vA~~Lka~-Ga~Viv~D~~p~~a~~A~~~G~~~~------sL~eal~~ADVVilt~gt~~i  279 (436)
T 3h9u_A          208 MIAGKTACVCG-YGDVGKGCAAALRGF-GARVVVTEVDPINALQAAMEGYQVL------LVEDVVEEAHIFVTTTGNDDI  279 (436)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCEEC------CHHHHTTTCSEEEECSSCSCS
T ss_pred             cccCCEEEEEe-eCHHHHHHHHHHHHC-CCEEEEECCChhhhHHHHHhCCeec------CHHHHHhhCCEEEECCCCcCc
Confidence            44789999999 999999999999996 9999999999888777777776432      345556789999998886554


Q ss_pred             ee-eeeeccccCCceEEEEeecc
Q 025278          228 SI-VYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       228 ~~-~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .. ..+..++ ++..++.+|...
T Consensus       280 I~~e~l~~MK-~gAIVINvgRg~  301 (436)
T 3h9u_A          280 ITSEHFPRMR-DDAIVCNIGHFD  301 (436)
T ss_dssp             BCTTTGGGCC-TTEEEEECSSSG
T ss_pred             cCHHHHhhcC-CCcEEEEeCCCC
Confidence            33 3355555 677888887544

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.72  E-value=7.1e-05  Score=58.86  Aligned_cols=94  Identities=18%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCccccccCCCccEEEECCCCccce---
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKENIEDLPEKFDVVFDAVGKMCIS---  228 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~d~vid~~G~~~~~---  228 (255)
                      +|+|+||+|.+|...++.+... |.+|+++++++++.+.+. .+...+ .|..+... +..+++|+||.++|.....   
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~   78 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNR-GHEVTAIVRNAGKITQTH-KDINILQKDIFDLTL-SDLSDQNVVVDAYGISPDEAEK   78 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCH-HHHTTCSEEEECCCSSTTTTTS
T ss_pred             eEEEEcCCchhHHHHHHHHHhC-CCEEEEEEcCchhhhhcc-CCCeEEeccccChhh-hhhcCCCEEEECCcCCccccch
Confidence            6999999999999999988884 899999999988776554 343322 22222222 3346899999999864211   


Q ss_pred             -----eeeeeccccC-CceEEEEeecc
Q 025278          229 -----IVYQKCDKFQ-EKSLINFGLFR  249 (255)
Q Consensus       229 -----~~~~~~~~~~-~G~~v~~G~~~  249 (255)
                           ...+..++.. .++++.++...
T Consensus        79 ~~~~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           79 HVTSLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             HHHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEecce
Confidence                 1222233212 47888887643

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.69  E-value=0.00015  Score=59.49  Aligned_cols=75  Identities=20%  Similarity=0.290  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE-E--cCCCcc-ccc-------cCCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA-I--DYTKEN-IED-------LPEKFD  216 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v-~--~~~~~~-~~~-------~~~~~d  216 (255)
                      -.|+++||+||++++|.+.++.+... |++|+++++++++++.+ +++|.... +  |-.+.+ ..+       ..+++|
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~-Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD  105 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAE-GARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRID  105 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            47899999999999999988887774 99999999999988765 56774322 2  222221 111       124799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++++++|.
T Consensus       106 iLVNNAG~  113 (273)
T 4fgs_A          106 VLFVNAGG  113 (273)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.63  E-value=0.00031  Score=53.80  Aligned_cols=80  Identities=19%  Similarity=0.194  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHHcCCCEEE-cCCCcc-cccc--CCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRSLGADLAI-DYTKEN-IEDL--PEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~~g~~~v~-~~~~~~-~~~~--~~~~d~vid~~G~  224 (255)
                      .+++|+|+| .|.+|...++.++. . |.+|+++++++++.+.+++.|...+. |..+.+ +.+.  .+++|+||.+++.
T Consensus        38 ~~~~v~IiG-~G~~G~~~a~~L~~-~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~  115 (183)
T 3c85_A           38 GHAQVLILG-MGRIGTGAYDELRA-RYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH  115 (183)
T ss_dssp             TTCSEEEEC-CSHHHHHHHHHHHH-HHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHh-ccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence            366899999 89999999999887 5 89999999999999999888877544 333322 2333  4689999999997


Q ss_pred             ccceeee
Q 025278          225 MCISIVY  231 (255)
Q Consensus       225 ~~~~~~~  231 (255)
                      ......+
T Consensus       116 ~~~~~~~  122 (183)
T 3c85_A          116 HQGNQTA  122 (183)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            6544333

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.62  E-value=0.00019  Score=57.99  Aligned_cols=71  Identities=14%  Similarity=0.223  Sum_probs=51.5

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE-EE--cCCCcc-ccc-------cCCCccEEEE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL-AI--DYTKEN-IED-------LPEKFDVVFD  220 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~-v~--~~~~~~-~~~-------~~~~~d~vid  220 (255)
                      ++|||+||++++|.+.++.+... |++|+++++++++.+.+.+.+.+. .+  |-.+++ ..+       ..+++|++++
T Consensus         3 K~vlVTGas~GIG~aia~~la~~-Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEA-GDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            78999999999999988877774 999999999999888776544332 22  222211 111       1247999999


Q ss_pred             CCC
Q 025278          221 AVG  223 (255)
Q Consensus       221 ~~G  223 (255)
                      ++|
T Consensus        82 NAG   84 (247)
T 3ged_A           82 NAC   84 (247)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            998

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.60  E-value=0.00024  Score=58.25  Aligned_cols=102  Identities=17%  Similarity=0.010  Sum_probs=67.6

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCC--C-EEEcCCCccccccCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGA--D-LAIDYTKENIEDLPE  213 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~--~-~v~~~~~~~~~~~~~  213 (255)
                      .+....+.++++||-.| +|. |..+..+++.++ +.++++++.+++.++.+++    .|.  . .++..+-.+. -..+
T Consensus       104 i~~~~~~~~~~~VLDiG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~  180 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTG-VGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEK  180 (277)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCC
T ss_pred             HHHHhCCCCCCEEEEEC-CcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCC
Confidence            44566788999999999 666 888888888743 5799999999998887754    343  1 1222221111 0124


Q ss_pred             CccEEEECCCCc-cceeeeeeccccCCceEEEEee
Q 025278          214 KFDVVFDAVGKM-CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       214 ~~d~vid~~G~~-~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      .+|+|+-..... .....+.+.++ ++|+++++-.
T Consensus       181 ~~D~V~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~  214 (277)
T 1o54_A          181 DVDALFLDVPDPWNYIDKCWEALK-GGGRFATVCP  214 (277)
T ss_dssp             SEEEEEECCSCGGGTHHHHHHHEE-EEEEEEEEES
T ss_pred             ccCEEEECCcCHHHHHHHHHHHcC-CCCEEEEEeC
Confidence            699999766544 33344456666 7898887654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.60  E-value=0.00024  Score=57.69  Aligned_cols=73  Identities=22%  Similarity=0.430  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE-E--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA-I--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v-~--~~~~~~-~~~-------~~~~  214 (255)
                      +|++++|+||++++|.+.++.+.. .|++|+++++++++++.+    ++.|.+.. +  |-.+.+ ...       ..++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~-~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   84 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFAL-NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSR   84 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            589999999999999998877776 499999999999887654    34564432 2  222221 111       1247


Q ss_pred             ccEEEECCC
Q 025278          215 FDVVFDAVG  223 (255)
Q Consensus       215 ~d~vid~~G  223 (255)
                      +|++++++|
T Consensus        85 iDiLVNNAG   93 (254)
T 4fn4_A           85 IDVLCNNAG   93 (254)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999998

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.57  E-value=0.00027  Score=57.45  Aligned_cols=74  Identities=27%  Similarity=0.275  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEEE---cCCCcc-cc-------ccCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLAI---DYTKEN-IE-------DLPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v~---~~~~~~-~~-------~~~~~  214 (255)
                      .|++++|+||++++|.+.++.+... |++|++.++++++++.+    ++.|.+...   |-.+++ ..       +..++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAA-GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            6899999999999999988888774 99999999998877554    344544332   222211 11       11357


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++++++|.
T Consensus        87 iDiLVNNAG~   96 (255)
T 4g81_D           87 VDILINNAGI   96 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999983

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.55  E-value=0.00048  Score=55.08  Aligned_cols=74  Identities=24%  Similarity=0.295  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCcccc---c---cCCCccEEEECC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKENIE---D---LPEKFDVVFDAV  222 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~---~---~~~~~d~vid~~  222 (255)
                      ++++++|+||+|++|...++.+... |.+|+++++++++.+.+. ++....++..+-.+..   +   ..+++|++|+++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~A   84 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECC
Confidence            5789999999999999999888874 999999999988776553 3422223322211211   1   123689999999


Q ss_pred             CC
Q 025278          223 GK  224 (255)
Q Consensus       223 G~  224 (255)
                      |.
T Consensus        85 g~   86 (244)
T 3d3w_A           85 AV   86 (244)
T ss_dssp             CC
T ss_pred             cc
Confidence            84

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.54  E-value=0.00041  Score=56.02  Aligned_cols=74  Identities=26%  Similarity=0.444  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh--hhHHHHHHcCCCEE---EcCCCcc-cccc--CCCccEEEEC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST--AKLDLLRSLGADLA---IDYTKEN-IEDL--PEKFDVVFDA  221 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~--~~~~~~~~~g~~~v---~~~~~~~-~~~~--~~~~d~vid~  221 (255)
                      .|++++|+||++++|.+.++.+... |++|++.+++.  +..+.+++.|.+..   .|-.++. ....  ..++|+++++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~-Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNN   86 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAA-GAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNN   86 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEEC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHc-CCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence            5899999999999999988887774 99999999864  33455666775432   2322222 1111  2469999999


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      .|.
T Consensus        87 AGi   89 (247)
T 4hp8_A           87 AGI   89 (247)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            983

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.54  E-value=0.00077  Score=52.67  Aligned_cols=102  Identities=13%  Similarity=0.128  Sum_probs=69.4

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~  214 (255)
                      .+....+.++++||-+| +|. |..+..+++.  +.+|++++.+++.++.+++    +|.+   .++..+..+.......
T Consensus        47 ~l~~l~~~~~~~vLDlG-cG~-G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  122 (204)
T 3njr_A           47 TLAALAPRRGELLWDIG-GGS-GSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL  122 (204)
T ss_dssp             HHHHHCCCTTCEEEEET-CTT-CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred             HHHhcCCCCCCEEEEec-CCC-CHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence            34566788999999999 665 8888888886  8899999999998887754    4543   2333333332222347


Q ss_pred             ccEEEECCCCcc-ceeeeeeccccCCceEEEEeec
Q 025278          215 FDVVFDAVGKMC-ISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       215 ~d~vid~~G~~~-~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      +|+|+...+... ....+.+.++ ++|++++....
T Consensus       123 ~D~v~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~  156 (204)
T 3njr_A          123 PEAVFIGGGGSQALYDRLWEWLA-PGTRIVANAVT  156 (204)
T ss_dssp             CSEEEECSCCCHHHHHHHHHHSC-TTCEEEEEECS
T ss_pred             CCEEEECCcccHHHHHHHHHhcC-CCcEEEEEecC
Confidence            999997654322 3344456677 88999887643

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.51  E-value=0.00054  Score=51.80  Aligned_cols=102  Identities=19%  Similarity=0.265  Sum_probs=69.5

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC--EEEcCCC-ccccccCCCc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD--LAIDYTK-ENIEDLPEKF  215 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~-~~~~~~~~~~  215 (255)
                      +....++++++||-.| +|. |..+..+++...+.++++++.+++..+.+++    .|.+  ..+..+. ..+....+.+
T Consensus        18 ~~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   95 (178)
T 3hm2_A           18 ISALAPKPHETLWDIG-GGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNP   95 (178)
T ss_dssp             HHHHCCCTTEEEEEES-TTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCC
T ss_pred             HHHhcccCCCeEEEeC-CCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCC
Confidence            3555778999999999 665 9999999987557899999999998888764    3433  2333322 2222222679


Q ss_pred             cEEEECCCCcc--ceeeeeeccccCCceEEEEee
Q 025278          216 DVVFDAVGKMC--ISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       216 d~vid~~G~~~--~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      |+|+-......  ....+.+.++ ++|++++...
T Consensus        96 D~i~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~  128 (178)
T 3hm2_A           96 DVIFIGGGLTAPGVFAAAWKRLP-VGGRLVANAV  128 (178)
T ss_dssp             SEEEECC-TTCTTHHHHHHHTCC-TTCEEEEEEC
T ss_pred             CEEEECCcccHHHHHHHHHHhcC-CCCEEEEEee
Confidence            99997654332  4455566677 8899987654

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.50  E-value=0.00043  Score=55.89  Aligned_cols=74  Identities=15%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc-----C--CCEEE--cCCCcc-ccc-------c
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL-----G--ADLAI--DYTKEN-IED-------L  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~-----g--~~~v~--~~~~~~-~~~-------~  211 (255)
                      .++++||+||++++|.+.++.+... |++|+++++++++.+.+. ++     +  ....+  |-.+.. ..+       .
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATD-GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            5789999999999999988887774 999999999988776553 21     2  12222  222211 111       1


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+.+|++|+++|.
T Consensus        85 ~g~iD~lvnnAg~   97 (250)
T 3nyw_A           85 YGAVDILVNAAAM   97 (250)
T ss_dssp             HCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2479999999994

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.49  E-value=0.00058  Score=53.49  Aligned_cols=100  Identities=18%  Similarity=0.125  Sum_probs=68.5

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEecChhhHHHHHH----cCCC--EEEcCCCccccccCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFG--ASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPE  213 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g--~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~  213 (255)
                      .++...++++++||-+| +| .|..+..+++.. +  .++++++.+++.++.+++    .|.+  .++..+........+
T Consensus        69 ~~~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  145 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIG-TG-CGYHAAVTAEIV-GEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA  145 (215)
T ss_dssp             HHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred             HHHhhCCCCCCEEEEEC-CC-ccHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence            34556788999999999 66 599999999884 4  799999999998887754    2322  222222111111134


Q ss_pred             CccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          214 KFDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       214 ~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      .+|+|+.+.........+.+.++ ++|++++.
T Consensus       146 ~fD~v~~~~~~~~~~~~~~~~L~-pgG~lv~~  176 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIPEPLIRQLK-DGGKLLMP  176 (215)
T ss_dssp             CEEEEEESSBBSSCCHHHHHTEE-EEEEEEEE
T ss_pred             CeeEEEECCchHHHHHHHHHHcC-CCcEEEEE
Confidence            79999988776655556677777 78887765

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.48  E-value=0.00063  Score=52.91  Aligned_cols=104  Identities=15%  Similarity=0.076  Sum_probs=69.1

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC--EEEcCCCccccccCCCc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPEKF  215 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~~  215 (255)
                      .+....++++++||-+| +|. |..+..+++.....++++++.+++.++.+++    .|.+  .++..+..+.......+
T Consensus        32 ~l~~l~~~~~~~vLDiG-~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIG-AGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP  109 (204)
T ss_dssp             HHHHTTCCTTCEEEEET-CTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred             HHHHcCCCCCCEEEEEC-CCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence            34566788999999999 664 8888999987335899999999998888754    3432  22333222211122579


Q ss_pred             cEEEECCCCc---cceeeeeeccccCCceEEEEeec
Q 025278          216 DVVFDAVGKM---CISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       216 d~vid~~G~~---~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      |+|+......   .....+.+.++ ++|++++....
T Consensus       110 D~i~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  144 (204)
T 3e05_A          110 DRVFIGGSGGMLEEIIDAVDRRLK-SEGVIVLNAVT  144 (204)
T ss_dssp             SEEEESCCTTCHHHHHHHHHHHCC-TTCEEEEEECB
T ss_pred             CEEEECCCCcCHHHHHHHHHHhcC-CCeEEEEEecc
Confidence            9999775532   23334456666 88999887543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.48  E-value=0.00045  Score=55.67  Aligned_cols=74  Identities=22%  Similarity=0.353  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEE---cCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAI---DYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~---~~~~~~-~~~~-------~~~~d~  217 (255)
                      .|++++|+||++++|.+.++.+... |++|+++++++++.+.+ ++++....+   |-.+.. ..+.       .+++|+
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   83 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAAD-GATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            5789999999999999988888874 99999999998887665 456644322   222211 1111       237999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        84 lv~nAg~   90 (247)
T 3rwb_A           84 LVNNASI   90 (247)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999994

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.48  E-value=0.0002  Score=56.49  Aligned_cols=98  Identities=12%  Similarity=0.058  Sum_probs=62.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHH-HhcCCcEEEEecChh-hHHHHHHcCCC-EEE--cCCCc-cccccCCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAK-HVFGASKVAATSSTA-KLDLLRSLGAD-LAI--DYTKE-NIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~-~~~g~~vi~~~~~~~-~~~~~~~~g~~-~v~--~~~~~-~~~~~~~~~d~vid~~G~~  225 (255)
                      ++|+|+||+|.+|...++.+. . .|.+|++++++++ +.+.+.+.+.. .++  |..+. .+.+..+++|++|++.|..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~   84 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTY-TDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES   84 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHH-CCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhc-CCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence            469999999999999888877 6 5999999999988 76655322222 222  22221 2223346899999999953


Q ss_pred             cc-eeeeeecc-ccCCceEEEEeeccC
Q 025278          226 CI-SIVYQKCD-KFQEKSLINFGLFRQ  250 (255)
Q Consensus       226 ~~-~~~~~~~~-~~~~G~~v~~G~~~~  250 (255)
                      .. ...++..+ +...++++.++....
T Consensus        85 n~~~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           85 GSDMASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             ChhHHHHHHHHHhcCCCeEEEEeecee
Confidence            21 11222222 212378999887654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.47  E-value=0.00041  Score=55.75  Aligned_cols=76  Identities=21%  Similarity=0.393  Sum_probs=53.4

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEE---cCCCcc-c---cccCCCccEEE
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAI---DYTKEN-I---EDLPEKFDVVF  219 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~---~~~~~~-~---~~~~~~~d~vi  219 (255)
                      ..++++|||+||+|++|...+..+... |++|+++++++++++.+. ++.....+   |..+.. .   .+..+++|++|
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li   89 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKL-GSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILV   89 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            457899999999999999988877774 999999999998877653 44433222   222211 1   11134799999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      +++|.
T Consensus        90 ~~Ag~   94 (249)
T 3f9i_A           90 CNAGI   94 (249)
T ss_dssp             ECCC-
T ss_pred             ECCCC
Confidence            99983

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.46  E-value=0.00046  Score=55.84  Aligned_cols=73  Identities=23%  Similarity=0.333  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC--CCcc-cccc-------CCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY--TKEN-IEDL-------PEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~--~~~~-~~~~-------~~~~d~vi  219 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+..++++. ..+..  .+.. ..+.       .+++|++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAR-EGALVALCDLRPEGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSTTHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCChhHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            478999999999999998888777 49999999998877444455542 33322  2211 1111       23789999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      +++|.
T Consensus        83 ~~Ag~   87 (256)
T 2d1y_A           83 NNAAI   87 (256)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99984

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.46  E-value=0.0005  Score=55.29  Aligned_cols=74  Identities=26%  Similarity=0.353  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE-EcCCCcc-cccc-------CCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA-IDYTKEN-IEDL-------PEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v-~~~~~~~-~~~~-------~~~~d~vi  219 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+ +++|...+ .|-.+.. ..+.       .+.+|++|
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   82 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAK-EGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999999999999998888877 499999999998887655 34563222 2322221 1111       13689999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      ++.|.
T Consensus        83 n~Ag~   87 (245)
T 1uls_A           83 HYAGI   87 (245)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99984

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.44  E-value=0.00098  Score=54.12  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCch--HHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCC--CEEE--cCCCcc-cccc-------
Q 025278          150 AGKSILVLGGAGG--VGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGA--DLAI--DYTKEN-IEDL-------  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~--~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~--~~v~--~~~~~~-~~~~-------  211 (255)
                      .+++++|+||+|.  +|...++.+.. .|++|++++++++..+.++    +++.  -..+  |-.+.. ..+.       
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHE-AGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH-CCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            5789999999955  99998887777 4999999998875544443    3332  1222  322221 1111       


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+.+|++|+++|.
T Consensus        85 ~g~id~li~~Ag~   97 (266)
T 3oig_A           85 VGVIHGIAHCIAF   97 (266)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCeeEEEEcccc
Confidence            2378999999984

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.44  E-value=0.00014  Score=57.39  Aligned_cols=95  Identities=14%  Similarity=0.186  Sum_probs=61.3

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCC--ccccccCCCccEEEECCCCccce-
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTK--ENIEDLPEKFDVVFDAVGKMCIS-  228 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~--~~~~~~~~~~d~vid~~G~~~~~-  228 (255)
                      +|+|+||+|.+|...++.+.. .|.+|+++++++++.+..  .+...+ .|..+  +.+.+..+++|+||.++|..... 
T Consensus         2 ~ilItGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~   78 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLST-TDYQIYAGARKVEQVPQY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSL   78 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTT-SSCEEEEEESSGGGSCCC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTTSSC
T ss_pred             eEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCccchhhc--CCceEEEecccCCHHHHHHHHcCCCEEEECCcCCCCCc
Confidence            699999999999999998887 489999999998765432  222221 23322  22344456899999999954311 


Q ss_pred             --------eeeeeccc-cCCceEEEEeeccC
Q 025278          229 --------IVYQKCDK-FQEKSLINFGLFRQ  250 (255)
Q Consensus       229 --------~~~~~~~~-~~~G~~v~~G~~~~  250 (255)
                              ....+.++ ..-++++.++....
T Consensus        79 ~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           79 LKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             EeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence                    11122222 12368998887654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.44  E-value=0.00059  Score=49.96  Aligned_cols=76  Identities=18%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE-cCCCccc-ccc-CCCccEEEECCCCccc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI-DYTKENI-EDL-PEKFDVVFDAVGKMCI  227 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~-~~~~~~~-~~~-~~~~d~vid~~G~~~~  227 (255)
                      .++|+|.| .|.+|...++.++.. |.+++++++++++.+.+++.|...+. |..+.+. .+. .+++|++|-+++....
T Consensus         7 ~~~viIiG-~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~   84 (140)
T 3fwz_A            7 CNHALLVG-YGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE   84 (140)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence            46799999 899999999999984 99999999999999999988876543 2222222 211 3478999999997654


Q ss_pred             e
Q 025278          228 S  228 (255)
Q Consensus       228 ~  228 (255)
                      .
T Consensus        85 n   85 (140)
T 3fwz_A           85 A   85 (140)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.43  E-value=9.3e-05  Score=59.65  Aligned_cols=76  Identities=24%  Similarity=0.391  Sum_probs=52.1

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC-EEEcCCCcc-cc---ccCCCccEEEECC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD-LAIDYTKEN-IE---DLPEKFDVVFDAV  222 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~-~v~~~~~~~-~~---~~~~~~d~vid~~  222 (255)
                      +-.|++++|+||++++|.+.++.+... |++|++.++++++++..+.-.+. ...|-.+++ ..   +..+++|+++++.
T Consensus         8 lf~GK~alVTGas~GIG~aia~~la~~-Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNA   86 (242)
T 4b79_A            8 IYAGQQVLVTGGSSGIGAAIAMQFAEL-GAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNA   86 (242)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECC
Confidence            347999999999999999988888774 99999999988776543221111 112222221 11   1245799999999


Q ss_pred             CC
Q 025278          223 GK  224 (255)
Q Consensus       223 G~  224 (255)
                      |-
T Consensus        87 Gi   88 (242)
T 4b79_A           87 GI   88 (242)
T ss_dssp             CC
T ss_pred             CC
Confidence            83

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.42  E-value=0.00033  Score=56.36  Aligned_cols=74  Identities=28%  Similarity=0.397  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE--cCCCcc-cc---ccCCCccEEEECCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI--DYTKEN-IE---DLPEKFDVVFDAVG  223 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~--~~~~~~-~~---~~~~~~d~vid~~G  223 (255)
                      .+++++|+||+|++|...++.+... |++|+++++++++.+.+.++.....+  |..+.. ..   +..+++|++|+++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~Ag   83 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFARE-GAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG   83 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECCc
Confidence            4789999999999999988888774 99999999998776544433211222  322221 11   11357999999998


Q ss_pred             C
Q 025278          224 K  224 (255)
Q Consensus       224 ~  224 (255)
                      .
T Consensus        84 ~   84 (246)
T 2ag5_A           84 F   84 (246)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.42  E-value=0.00058  Score=56.13  Aligned_cols=74  Identities=22%  Similarity=0.339  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh-HHH----HHHcCCCEE-E--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK-LDL----LRSLGADLA-I--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~-~~~----~~~~g~~~v-~--~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+||+|++|...++.+... |++|++++++.++ .+.    +++.|.+.. +  |..+.. ...       ..+
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988888874 9999999887653 222    234454322 2  222211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|++.|.
T Consensus       107 ~iD~lv~~Ag~  117 (283)
T 1g0o_A          107 KLDIVCSNSGV  117 (283)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            78999999984

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.42  E-value=0.00032  Score=57.06  Aligned_cols=97  Identities=10%  Similarity=0.049  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC-EEEcCCCccccccCCCccEEEECCCCccc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD-LAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      .++.+||.+| +|. |..+..+++...+.++++++.+++.++.+++.+.. .++..+..+.....+.+|+|+. ......
T Consensus        84 ~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~-~~~~~~  160 (269)
T 1p91_A           84 DKATAVLDIG-CGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR-IYAPCK  160 (269)
T ss_dssp             TTCCEEEEET-CTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEE-ESCCCC
T ss_pred             CCCCEEEEEC-CCC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEE-eCChhh
Confidence            6788999999 777 99999999875478999999999999999876533 2333322222212347999995 444555


Q ss_pred             eeeeeeccccCCceEEEEeecc
Q 025278          228 SIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       228 ~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ...+.+.++ ++|+++++....
T Consensus       161 l~~~~~~L~-pgG~l~~~~~~~  181 (269)
T 1p91_A          161 AEELARVVK-PGGWVITATPGP  181 (269)
T ss_dssp             HHHHHHHEE-EEEEEEEEEECT
T ss_pred             HHHHHHhcC-CCcEEEEEEcCH
Confidence            555667777 789998876543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.41  E-value=0.00044  Score=56.01  Aligned_cols=75  Identities=23%  Similarity=0.366  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCE-EE--cCCCcc-ccc-------cCCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADL-AI--DYTKEN-IED-------LPEKFD  216 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~-v~--~~~~~~-~~~-------~~~~~d  216 (255)
                      -.|++++|+||++++|...++.+.. .|++|+++++++++++.+. +++... .+  |-.+.. ...       ..+++|
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVE-GGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAID   84 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            3578999999999999998888777 4999999999998877653 455332 22  222211 111       124799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|++.|.
T Consensus        85 ~lv~nAg~   92 (255)
T 4eso_A           85 LLHINAGV   92 (255)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.40  E-value=0.00022  Score=51.95  Aligned_cols=74  Identities=24%  Similarity=0.382  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE-cCCCcc-cccc-CCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI-DYTKEN-IEDL-PEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~-~~~~~~-~~~~-~~~~d~vid~~G~~  225 (255)
                      .+++|+|+| +|.+|...++.++.. |.+++++++++++.+.+++.+...+. +..+.+ +.+. .+++|++|.+++..
T Consensus         5 ~~~~v~I~G-~G~iG~~~a~~l~~~-g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            5 KNKQFAVIG-LGRFGGSIVKELHRM-GHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHHT-TCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             cCCcEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            356799999 599999999999885 89999999998888777666654332 222211 1221 35799999999975

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.39  E-value=0.00083  Score=54.43  Aligned_cols=74  Identities=23%  Similarity=0.368  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-EE--cCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-AI--DYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~-~~~-------~~~~~d~  217 (255)
                      .++++||+||+|++|...++.+.. .|++|++++++.++.+.+ ++++... .+  |-.+.+ ..+       ..+++|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   85 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVR-EGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDI   85 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            578999999999999998887777 499999999998887665 4555332 22  222221 111       1247999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        86 lv~~Ag~   92 (259)
T 4e6p_A           86 LVNNAAL   92 (259)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.36  E-value=0.00023  Score=56.84  Aligned_cols=75  Identities=19%  Similarity=0.309  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC--cEEEEecChhhHHHHHHcCCCEE-EcCCC-ccccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA--SKVAATSSTAKLDLLRSLGADLA-IDYTK-ENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~--~vi~~~~~~~~~~~~~~~g~~~v-~~~~~-~~~~~~~~~~d~vid~~G~~  225 (255)
                      .+++|+|+||+|.+|...++.+... |.  +|+++++++++.+....-+...+ .|..+ +.+.+..+++|++|+++|..
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~-G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcC-CCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            4679999999999999988888774 88  99999988765432221122221 22222 22334456899999999953

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.35  E-value=0.00055  Score=55.47  Aligned_cols=74  Identities=18%  Similarity=0.381  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc---CCCE-EE--cCCCcc-cccc-------CCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL---GADL-AI--DYTKEN-IEDL-------PEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~---g~~~-v~--~~~~~~-~~~~-------~~~  214 (255)
                      .++++||+||++++|.+.++.+... |++|+++++++++.+.+. ++   +... .+  |-.+.. ..+.       .++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKE-GARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGR   83 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988888774 999999999998877653 32   3222 22  222211 1111       247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        84 id~lv~nAg~   93 (257)
T 3imf_A           84 IDILINNAAG   93 (257)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999983

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.35  E-value=0.00055  Score=55.66  Aligned_cols=74  Identities=28%  Similarity=0.434  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcC-CC-EEE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLG-AD-LAI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g-~~-~v~--~~~~~~-~~~-------~~~  213 (255)
                      .|++++|+||+|++|...++.+.. .|++|+++++++++.+.+.    +.+ .. ..+  |-.+.. ..+       ..+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFAR-AGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            578999999999999998888777 4999999999988766542    233 12 222  222211 111       123


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|++.|.
T Consensus        88 ~id~lvnnAg~   98 (262)
T 3pk0_A           88 GIDVVCANAGV   98 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999983

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.35  E-value=0.00055  Score=55.84  Aligned_cols=75  Identities=25%  Similarity=0.433  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE-E--cCCCcc-cccc-------CCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA-I--DYTKEN-IEDL-------PEKFD  216 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v-~--~~~~~~-~~~~-------~~~~d  216 (255)
                      -.|+++||+||+|++|...++.+... |++|+++++++++++.+ ++++.... +  |-.+.. ..+.       .+++|
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  103 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQ-GAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGID  103 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            35789999999999999988888774 99999999998887665 45664432 2  222211 1111       24799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|+++|.
T Consensus       104 ~lvnnAg~  111 (266)
T 3grp_A          104 ILVNNAGI  111 (266)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999994

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.35  E-value=0.00083  Score=54.47  Aligned_cols=74  Identities=16%  Similarity=0.212  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCc--hHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCC--CEEE--cCCCcc-ccc-------c
Q 025278          150 AGKSILVLGGAG--GVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGA--DLAI--DYTKEN-IED-------L  211 (255)
Q Consensus       150 ~g~~VlI~ga~g--~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~--~~v~--~~~~~~-~~~-------~  211 (255)
                      .|++++|+||+|  ++|.+.++.+... |++|+++++++++++.+.    +++.  ...+  |-.++. ..+       .
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~-Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQL-GAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            589999999876  8999988777764 999999999988766553    3342  1222  322221 111       1


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+.+|+++++.|.
T Consensus        84 ~G~iD~lvnnAg~   96 (256)
T 4fs3_A           84 VGNIDGVYHSIAF   96 (256)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             hCCCCEEEecccc
Confidence            2479999999883

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.35  E-value=0.00079  Score=55.00  Aligned_cols=74  Identities=28%  Similarity=0.451  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEE--cCCCcc-cccc-------CCCccEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAI--DYTKEN-IEDL-------PEKFDVV  218 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~--~~~~~~-~~~~-------~~~~d~v  218 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+. ++.....+  |-.+.. ....       .+++|++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   86 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVN-SGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   86 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            578999999999999998888877 4999999999988776553 44322223  222211 1111       2378999


Q ss_pred             EECCCC
Q 025278          219 FDAVGK  224 (255)
Q Consensus       219 id~~G~  224 (255)
                      |++.|.
T Consensus        87 v~nAg~   92 (270)
T 1yde_A           87 VNNAGH   92 (270)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.35  E-value=0.0012  Score=51.40  Aligned_cols=99  Identities=13%  Similarity=-0.013  Sum_probs=68.5

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC--EEEcCCCccccccCCCc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPEKF  215 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~~  215 (255)
                      .++...++++++||-+| +| .|..+..+++.  +.++++++.+++..+.+++    .|..  .++..+........+.+
T Consensus        69 ~~~~l~~~~~~~vLdiG-~G-~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  144 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIG-TG-SGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF  144 (210)
T ss_dssp             HHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHhcCCCCCCEEEEEc-CC-CCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence            34556778999999999 66 58888888886  7899999999998887754    3432  22222221111123579


Q ss_pred             cEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          216 DVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       216 d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      |+|+...........+.+.++ ++|++++.
T Consensus       145 D~i~~~~~~~~~~~~~~~~L~-pgG~lv~~  173 (210)
T 3lbf_A          145 DAIIVTAAPPEIPTALMTQLD-EGGILVLP  173 (210)
T ss_dssp             EEEEESSBCSSCCTHHHHTEE-EEEEEEEE
T ss_pred             cEEEEccchhhhhHHHHHhcc-cCcEEEEE
Confidence            999988776655556677777 78887764

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.34  E-value=0.0013  Score=52.43  Aligned_cols=74  Identities=23%  Similarity=0.310  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc-CCCEE-EcCCCcc-cccc---CCCccEEEECC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL-GADLA-IDYTKEN-IEDL---PEKFDVVFDAV  222 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~-g~~~v-~~~~~~~-~~~~---~~~~d~vid~~  222 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+. +. +...+ .|..+.. ..+.   .+.+|++|+++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~A   84 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHA-SGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNA   84 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECC
Confidence            578999999999999998888887 4999999999988776553 33 33222 2222211 1111   23689999999


Q ss_pred             CC
Q 025278          223 GK  224 (255)
Q Consensus       223 G~  224 (255)
                      |.
T Consensus        85 g~   86 (244)
T 1cyd_A           85 AL   86 (244)
T ss_dssp             CC
T ss_pred             cc
Confidence            83

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.33  E-value=0.00079  Score=55.21  Aligned_cols=75  Identities=24%  Similarity=0.410  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCC-EEE--cCCCcc-cccc-------CC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGAD-LAI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~-~v~--~~~~~~-~~~~-------~~  213 (255)
                      -.|+++||+||++++|...++.+... |++|+++++++++.+.+.    +.+.. ..+  |-.+.. ..+.       .+
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  108 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEA-GAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELG  108 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35789999999999999988887774 999999999888765542    23322 223  222221 1111       23


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus       109 ~iD~lvnnAg~  119 (276)
T 3r1i_A          109 GIDIAVCNAGI  119 (276)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.33  E-value=0.00067  Score=55.15  Aligned_cols=74  Identities=19%  Similarity=0.196  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH-HHHHHcCCCEE-EcCCCcc-ccc-------cCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL-DLLRSLGADLA-IDYTKEN-IED-------LPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~-~~~~~~g~~~v-~~~~~~~-~~~-------~~~~~d~vi  219 (255)
                      .++++||+||+|++|.+.++.+... |++|+++++++++. +.+++.+...+ .|-.+.. ..+       ..+++|++|
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv  104 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEH-GHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVV  104 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            4688999999999999988877774 99999999987664 33455664332 2322221 111       124799999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      +++|.
T Consensus       105 ~nAg~  109 (260)
T 3gem_A          105 HNASE  109 (260)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99983

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.33  E-value=0.00094  Score=48.74  Aligned_cols=75  Identities=24%  Similarity=0.290  Sum_probs=56.3

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE-cCCCcc-cccc-CCCccEEEECCCCccc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI-DYTKEN-IEDL-PEKFDVVFDAVGKMCI  227 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~-~~~~~~-~~~~-~~~~d~vid~~G~~~~  227 (255)
                      .++++|+| .|.+|...++.+... |.+|+++++++++.+.+++.|...+. |..+.. +.+. .+++|++|.+++....
T Consensus         6 ~~~v~I~G-~G~iG~~la~~L~~~-g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (141)
T 3llv_A            6 RYEYIVIG-SEAAGVGLVRELTAA-GKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF   83 (141)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHH
Confidence            46799999 799999999999884 99999999999999988887765432 222222 2221 3579999999995543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.33  E-value=0.00086  Score=54.11  Aligned_cols=75  Identities=21%  Similarity=0.294  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc----C-CCEE--EcCCCcccc---c-------
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL----G-ADLA--IDYTKENIE---D-------  210 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~----g-~~~v--~~~~~~~~~---~-------  210 (255)
                      -.+++++|+||++++|.+.++.+.. .|++|+++++++++.+.+. ++    + ....  .|....+..   +       
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYAR-YGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            4678999999999999998887777 4999999999988776542 21    2 1122  232111111   1       


Q ss_pred             cCCCccEEEECCCC
Q 025278          211 LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 ~~~~~d~vid~~G~  224 (255)
                      ..+.+|++|+++|.
T Consensus        89 ~~g~id~lv~nAg~  102 (252)
T 3f1l_A           89 NYPRLDGVLHNAGL  102 (252)
T ss_dssp             HCSCCSEEEECCCC
T ss_pred             hCCCCCEEEECCcc
Confidence            12479999999984

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.32  E-value=0.00095  Score=53.68  Aligned_cols=74  Identities=23%  Similarity=0.403  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H---cCCCE-EE--cCCCcc-cccc-------CCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S---LGADL-AI--DYTKEN-IEDL-------PEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~---~g~~~-v~--~~~~~~-~~~~-------~~~  214 (255)
                      .+++++|+||+|++|.+.++.+... |++|+++++++++++.+. +   .|... .+  |..+.+ ....       .++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   84 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAE-GAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGG   84 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999988888774 999999999988766542 2   34332 22  322221 1111       247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|++.|.
T Consensus        85 id~lv~nAg~   94 (247)
T 2jah_A           85 LDILVNNAGI   94 (247)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.32  E-value=0.00055  Score=56.75  Aligned_cols=74  Identities=27%  Similarity=0.453  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHc---C-CC-EEE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSL---G-AD-LAI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~---g-~~-~v~--~~~~~~-~~~-------~~~  213 (255)
                      .++++||+||+|++|...++.+... |++|+++++++++++.+ +++   + .. ..+  |-.+.. ..+       ..+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARA-GANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            6789999999999999988887774 99999999998876654 333   2 11 222  222211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus       119 ~iD~lvnnAg~  129 (293)
T 3rih_A          119 ALDVVCANAGI  129 (293)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999999984

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.32  E-value=0.00046  Score=55.79  Aligned_cols=74  Identities=27%  Similarity=0.329  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-EE--cCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-AI--DYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~-~~~~-------~~~~d~  217 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+ ++++... .+  |..+.+ ..+.       .+++|+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVA-AGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            478999999999999998888877 499999999998877654 3444322 22  322221 1111       137999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        83 lv~nAg~   89 (254)
T 1hdc_A           83 LVNNAGI   89 (254)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.32  E-value=0.0006  Score=55.10  Aligned_cols=73  Identities=21%  Similarity=0.289  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE-EE--cCCCcc-cc-------ccCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL-AI--DYTKEN-IE-------DLPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~-v~--~~~~~~-~~-------~~~~~  214 (255)
                      .+++++|+||++++|.+.++.+... |++|+++++++++++.+.    +.|... .+  |-.+.. ..       +. ++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-g~   83 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAE-GFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH-AP   83 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-SC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-CC
Confidence            5789999999999999988888774 999999999988766542    234322 22  222221 11       12 47


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        84 id~lv~nAg~   93 (252)
T 3h7a_A           84 LEVTIFNVGA   93 (252)
T ss_dssp             EEEEEECCCC
T ss_pred             ceEEEECCCc
Confidence            9999999994

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.31  E-value=0.00068  Score=55.51  Aligned_cols=75  Identities=27%  Similarity=0.397  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCC-EEE--cCCCcc-cccc-------CCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGAD-LAI--DYTKEN-IEDL-------PEKFD  216 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~-~v~--~~~~~~-~~~~-------~~~~d  216 (255)
                      ..++++||+||++++|.+.+..+... |++|++++++.++++.+ ++++.. ..+  |-.+.. ..+.       .+++|
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  104 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGA-GYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVD  104 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            45789999999999999988877774 99999999998887665 455422 222  222221 1111       23799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|+++|.
T Consensus       105 ~lVnnAg~  112 (272)
T 4dyv_A          105 VLFNNAGT  112 (272)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.31  E-value=0.00081  Score=54.40  Aligned_cols=74  Identities=24%  Similarity=0.365  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-EE--cCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-AI--DYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~-~~~~-------~~~~d~  217 (255)
                      .+++++|+||++++|...++.+.. .|++|+++++++++++.+ ++++... .+  |-.+.. ..+.       .+++|+
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   86 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAK-GGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDI   86 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCE
Confidence            478999999999999998888877 499999999999887765 4555432 22  222211 1111       237899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        87 li~~Ag~   93 (261)
T 3n74_A           87 LVNNAGI   93 (261)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999984

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.31  E-value=0.00089  Score=55.21  Aligned_cols=75  Identities=19%  Similarity=0.300  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCE-EE--cCCCcc-cc---ccCCCccEEEE
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADL-AI--DYTKEN-IE---DLPEKFDVVFD  220 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~-v~--~~~~~~-~~---~~~~~~d~vid  220 (255)
                      -.|++++|+||+|++|...++.+.. .|++|+++++++++.+.+. +++... .+  |-.+.. ..   +..+++|++|+
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~   92 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELAR-RGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLIN   92 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEEE
Confidence            3678999999999999998888877 4999999999998877664 454322 22  222211 11   11247899999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      ++|.
T Consensus        93 nAg~   96 (291)
T 3rd5_A           93 NAGI   96 (291)
T ss_dssp             CCCC
T ss_pred             CCcC
Confidence            9994

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.31  E-value=0.00083  Score=55.11  Aligned_cols=75  Identities=21%  Similarity=0.329  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE-E--cCCCcc-cccc-------CCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA-I--DYTKEN-IEDL-------PEKFD  216 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v-~--~~~~~~-~~~~-------~~~~d  216 (255)
                      -.++++||+||+|++|.+.++.+... |++|+++++++++.+.+ ++++.... +  |-.+.. ..+.       .+++|
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  103 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKN-GAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVD  103 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            35789999999999999988887774 99999999998887665 45554322 2  222211 1111       23799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|+++|.
T Consensus       104 ~lv~nAg~  111 (277)
T 4dqx_A          104 VLVNNAGF  111 (277)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999993

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.31  E-value=0.0013  Score=53.90  Aligned_cols=74  Identities=20%  Similarity=0.273  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+||+|++|...+..+.. .|++|+++++++++.+.+    ++.+... .+  |..+.. ..+       ..++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGK-EGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP   99 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            578999999999999998888877 499999999998776543    2234332 22  222211 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus       100 iD~lv~~Ag~  109 (277)
T 2rhc_B          100 VDVLVNNAGR  109 (277)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.30  E-value=0.00075  Score=54.25  Aligned_cols=74  Identities=23%  Similarity=0.360  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE--EE--cCCCcc-cccc------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL--AI--DYTKEN-IEDL------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~--v~--~~~~~~-~~~~------~~~~d~  217 (255)
                      .+++++|+||+|++|...++.+... |++|+++++++++.+.+ ++++...  .+  |..+.. ..+.      .+++|+
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~   88 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAAS-GARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSI   88 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcE
Confidence            5789999999999999988888874 99999999998876654 3444332  22  222221 1111      147899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        89 li~~Ag~   95 (254)
T 2wsb_A           89 LVNSAGI   95 (254)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999984

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.30  E-value=0.001  Score=53.94  Aligned_cols=74  Identities=20%  Similarity=0.374  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc----CCCE-EE--cCCCcc-cccc-------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL----GADL-AI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~----g~~~-v~--~~~~~~-~~~~-------~~  213 (255)
                      .+++++|+||+|++|...++.+... |++|+++++++++.+.+. ++    +... .+  |..+.. ..+.       .+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKE-GAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFG   84 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999988888774 999999999988765442 22    4332 22  322221 1111       23


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        85 ~id~lv~~Ag~   95 (263)
T 3ai3_A           85 GADILVNNAGT   95 (263)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.30  E-value=0.001  Score=54.16  Aligned_cols=74  Identities=22%  Similarity=0.373  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc-----CCCE-EE--cCCCcc-cccc-------C
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL-----GADL-AI--DYTKEN-IEDL-------P  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~-----g~~~-v~--~~~~~~-~~~~-------~  212 (255)
                      .+++++|+||+|++|...++.+... |++|+++++++++.+.+. ++     +... .+  |-.+.+ ..+.       .
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999988888774 999999999988765442 22     4332 22  322221 1111       2


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus        91 g~id~lv~nAg~  102 (267)
T 1iy8_A           91 GRIDGFFNNAGI  102 (267)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            378999999984

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.30  E-value=0.00092  Score=55.04  Aligned_cols=74  Identities=18%  Similarity=0.295  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc---CCCE-EE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL---GADL-AI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~---g~~~-v~--~~~~~~-~~~-------~~~~  214 (255)
                      .++++||+||++++|.+.++.+... |++|++++++.++.+.+. ++   +... .+  |-.+.. ..+       ..++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAAD-GVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999988877774 999999999988776553 32   3222 22  222211 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus       106 iD~lVnnAg~  115 (283)
T 3v8b_A          106 LDIVVANAGI  115 (283)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.29  E-value=0.00075  Score=55.42  Aligned_cols=74  Identities=24%  Similarity=0.307  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCC-EEE--cCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGAD-LAI--DYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~-~v~--~~~~~~-~~~-------~~~~~d~  217 (255)
                      .|+++||+||++++|.+.+..+... |++|+++++++++.+.+ ++++.. ..+  |-.+.. ..+       ..+++|+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  106 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADE-GCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDK  106 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999988877774 99999999998887665 455532 222  322221 111       1247999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus       107 lvnnAg~  113 (277)
T 3gvc_A          107 LVANAGV  113 (277)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.29  E-value=0.0012  Score=53.58  Aligned_cols=75  Identities=20%  Similarity=0.308  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE-EE--cCCCcc-ccc-------cCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL-AI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~-v~--~~~~~~-~~~-------~~~  213 (255)
                      -.++++||+||++++|...++.+.. .|++|++++++.++++.+.    +.+... .+  |-.+.. ..+       ..+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAE-QGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4678999999999999998888777 4999999999988776542    334332 22  322221 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|++.|.
T Consensus        88 ~id~lv~nAg~   98 (264)
T 3ucx_A           88 RVDVVINNAFR   98 (264)
T ss_dssp             CCSEEEECCCS
T ss_pred             CCcEEEECCCC
Confidence            79999999975

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.29  E-value=0.00053  Score=53.33  Aligned_cols=134  Identities=14%  Similarity=0.111  Sum_probs=77.9

Q ss_pred             ceeeEEe-eeCCceEeCCCCCCHHhhhccchhHHHHHHHHH--hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEE
Q 025278          105 SLAEYTA-VEENLLALKPKNLSFVEAASLPLATETAYEGLE--RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVA  181 (255)
Q Consensus       105 ~~~~~~~-~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~--~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~  181 (255)
                      .|.+|.. .+....+.+++++...... .+    +....++  ...++++++||-.| +|. |..+..+++. +..++++
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~-~~----~~~~~~~~l~~~~~~~~~vLDiG-~G~-G~~~~~l~~~-~~~~v~~   88 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGN-HQ----TTQLAMLGIERAMVKPLTVADVG-TGS-GILAIAAHKL-GAKSVLA   88 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CC-HH----HHHHHHHHHHHHCSSCCEEEEET-CTT-SHHHHHHHHT-TCSEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCC-Cc----cHHHHHHHHHHhccCCCEEEEEC-CCC-CHHHHHHHHC-CCCEEEE
Confidence            4566665 5666777777776553321 11    1111222  12257889999999 665 7788787774 4569999


Q ss_pred             EecChhhHHHHHH----cCCC--EEEcCCCccccccCCCccEEEECCCCc---cceeeeeeccccCCceEEEEeecc
Q 025278          182 ATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPEKFDVVFDAVGKM---CISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       182 ~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~~d~vid~~G~~---~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ++.+++.++.+++    .+..  .++..+..+.  ..+.+|+|+-.....   .....+.+.++ ++|++++.+...
T Consensus        89 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~  162 (205)
T 3grz_A           89 TDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVANILAEILLDLIPQLDSHLN-EDGQVIFSGIDY  162 (205)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEESCHHHHHHHGGGSGGGEE-EEEEEEEEEEEG
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEECCcHHHHHHHHHHHHHhcC-CCCEEEEEecCc
Confidence            9999998887754    3432  2333322221  235799999754422   22344455666 789998865543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.29  E-value=0.00086  Score=54.00  Aligned_cols=74  Identities=18%  Similarity=0.271  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H---cCCCE-EE--cCCCcc-cccc-------CCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S---LGADL-AI--DYTKEN-IEDL-------PEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~---~g~~~-v~--~~~~~~-~~~~-------~~~  214 (255)
                      .++++||+||++++|...++.+... |++|+++++++++.+.+. +   .+... .+  |-.+.+ ..+.       .++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALARE-GAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGG   86 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988888774 999999999988776542 2   23322 22  222211 1111       237


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|++.|.
T Consensus        87 id~li~~Ag~   96 (253)
T 3qiv_A           87 IDYLVNNAAI   96 (253)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999985

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.29  E-value=0.00061  Score=55.56  Aligned_cols=74  Identities=22%  Similarity=0.382  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCEE---EcCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADLA---IDYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~v---~~~~~~~-~~~-------~~~~  214 (255)
                      .++++||+||+|++|.+.+..+.. .|++|+++++++++++.+.    +.+....   .|-.+.. ...       ..++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGV-AGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999998888777 4999999999988776542    2343322   2322221 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        82 iD~lVnnAG~   91 (264)
T 3tfo_A           82 IDVLVNNAGV   91 (264)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.29  E-value=0.00021  Score=58.67  Aligned_cols=98  Identities=14%  Similarity=0.110  Sum_probs=64.0

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCCccc---
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGKMCI---  227 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~~~~---  227 (255)
                      +|||+||+|.+|...++.+....+.+|+++++++++...+...+...+ .|..+. .+.+..+++|+||.++|....   
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~   81 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHPSFK   81 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCSHHH
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCccchh
Confidence            699999999999998888776338999999999887655444454332 233322 233446799999999985321   


Q ss_pred             ----eeeeeeccccCC-ceEEEEeeccC
Q 025278          228 ----SIVYQKCDKFQE-KSLINFGLFRQ  250 (255)
Q Consensus       228 ----~~~~~~~~~~~~-G~~v~~G~~~~  250 (255)
                          ....+..++..+ ++++.++..+.
T Consensus        82 ~~~~~~~l~~aa~~~gv~~iv~~Ss~~~  109 (289)
T 3e48_A           82 RIPEVENLVYAAKQSGVAHIIFIGYYAD  109 (289)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred             hHHHHHHHHHHHHHcCCCEEEEEcccCC
Confidence                112222222122 58999888664

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.29  E-value=0.00084  Score=54.64  Aligned_cols=74  Identities=31%  Similarity=0.434  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCC-EEE--cCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGAD-LAI--DYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~-~v~--~~~~~~-~~~~-------~~~~d~  217 (255)
                      .+++++|+||+|++|...++.+... |++|+++++++++.+.+ ++++.. ..+  |-.+.. ..+.       .+.+|+
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   83 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFARE-GASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   83 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence            4789999999999999988888774 99999999998887665 344422 122  222221 1111       236899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|++.|.
T Consensus        84 lvnnAg~   90 (263)
T 2a4k_A           84 VAHFAGV   90 (263)
T ss_dssp             EEEGGGG
T ss_pred             EEECCCC
Confidence            9999983

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.28  E-value=0.00098  Score=53.12  Aligned_cols=99  Identities=18%  Similarity=0.155  Sum_probs=67.5

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCE--EEcCCC-ccccccCCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADL--AIDYTK-ENIEDLPEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~--v~~~~~-~~~~~~~~~  214 (255)
                      .++...++++++||-+| +| .|..+..+++.. +.++++++.+++..+.+++    .|.+.  ++..+. ..+.. ...
T Consensus        83 ~~~~l~~~~~~~vLdiG-~G-~G~~~~~la~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~  158 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVG-TG-SGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP-KAP  158 (235)
T ss_dssp             HHHHHTCCTTCCEEEEC-CT-TSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCC
T ss_pred             HHHhcCCCCCCEEEEEe-CC-cCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC-CCC
Confidence            44555788999999999 66 799999999985 5899999999988877754    34321  222221 11111 225


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      +|+|+.+.........+.+.++ ++|++++.
T Consensus       159 fD~Ii~~~~~~~~~~~~~~~L~-pgG~lvi~  188 (235)
T 1jg1_A          159 YDVIIVTAGAPKIPEPLIEQLK-IGGKLIIP  188 (235)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEE-EEEEEEEE
T ss_pred             ccEEEECCcHHHHHHHHHHhcC-CCcEEEEE
Confidence            9999988776555556666776 78887664

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.28  E-value=0.00077  Score=55.64  Aligned_cols=74  Identities=24%  Similarity=0.266  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHc----CCC-EEEcCCCc-cccccCCCccEEEEC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSL----GAD-LAIDYTKE-NIEDLPEKFDVVFDA  221 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~----g~~-~v~~~~~~-~~~~~~~~~d~vid~  221 (255)
                      -.|++++|+|++|++|.+++..+... |++|++++++.++.+.+ +++    +.. ...|..+. ...+..+.+|++|++
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~-G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~  195 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA  195 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence            36789999999999999988888874 88999999998876644 232    322 22343332 233345678999999


Q ss_pred             CC
Q 025278          222 VG  223 (255)
Q Consensus       222 ~G  223 (255)
                      +|
T Consensus       196 ag  197 (287)
T 1lu9_A          196 GA  197 (287)
T ss_dssp             CC
T ss_pred             CC
Confidence            97

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.28  E-value=0.00085  Score=54.32  Aligned_cols=74  Identities=23%  Similarity=0.333  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~~  214 (255)
                      .|++++|+||++++|...++.+... |++|+++++++++.+.+    ++.+... .+  |-.+.. ..+       ..++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKA-GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988877774 99999999998876654    2334332 22  222221 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        90 id~lv~nAg~   99 (256)
T 3gaf_A           90 ITVLVNNAGG   99 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.28  E-value=0.00097  Score=54.23  Aligned_cols=74  Identities=18%  Similarity=0.232  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH---HHcCCC-EEE--cCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL---RSLGAD-LAI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~---~~~g~~-~v~--~~~~~~-~~~-------~~~~~  215 (255)
                      .|++++|+||++++|.+.++.+.. .|++|++.++++++.+.+   ++.+.. ..+  |-.+++ ..+       ..+.+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~-~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~i   84 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAE-ERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRL   84 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            589999999999999998777766 499999999887765544   333422 222  322221 111       12479


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |+++++.|.
T Consensus        85 DiLVNnAGi   93 (258)
T 4gkb_A           85 DGLVNNAGV   93 (258)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.28  E-value=0.00065  Score=55.15  Aligned_cols=75  Identities=21%  Similarity=0.394  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE-EE--cCCCcc-ccc-------cCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL-AI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~-v~--~~~~~~-~~~-------~~~  213 (255)
                      -.++++||+||+|++|...+..+... |++|++++++.++++.+.    +.+... ++  |..+.+ ..+       ..+
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSL-GARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            45789999999999999988887774 999999999988776542    234322 22  222211 111       123


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|+++|.
T Consensus       106 ~id~lv~~Ag~  116 (262)
T 3rkr_A          106 RCDVLVNNAGV  116 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999985

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.28  E-value=0.0012  Score=52.51  Aligned_cols=73  Identities=21%  Similarity=0.337  Sum_probs=51.0

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-----HcCCCEE-E--cCCCcc-cccc-------CCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-----SLGADLA-I--DYTKEN-IEDL-------PEK  214 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-----~~g~~~v-~--~~~~~~-~~~~-------~~~  214 (255)
                      +++++|+||+|++|...++.+.. .|++|++++++.++.+.+.     +.+.... +  |-.+.. ..+.       .++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALAR-DGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            67899999999999998888877 4999999999988766542     3343322 2  222221 1111       137


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        81 id~li~~Ag~   90 (235)
T 3l77_A           81 VDVVVANAGL   90 (235)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999984

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.28  E-value=0.00081  Score=55.26  Aligned_cols=74  Identities=23%  Similarity=0.347  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEE-E--cCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLA-I--DYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v-~--~~~~~~-~~~-------~~~~~d~  217 (255)
                      .|+++||+||++++|.+.+..+... |++|++++++.++++.+. +++.... +  |-.+.. ...       ..+++|+
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   82 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAE-GARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDT   82 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            4789999999999999988887774 999999999998877654 4553322 2  222211 111       1247899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        83 lvnnAg~   89 (281)
T 3zv4_A           83 LIPNAGI   89 (281)
T ss_dssp             EECCCCC
T ss_pred             EEECCCc
Confidence            9999984

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.28  E-value=0.00097  Score=53.30  Aligned_cols=71  Identities=24%  Similarity=0.324  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCcccccc-------CCCccEEEECC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKENIEDL-------PEKFDVVFDAV  222 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~-------~~~~d~vid~~  222 (255)
                      +++++|+||+|++|...++.+... |++|+++++++++  ..++++...+ .|..+....+.       .+++|++|++.
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~-G~~V~~~~r~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~A   78 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVAR-GYRVAIASRNPEE--AAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAA   78 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCHH--HHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHH--HHHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEEECC
Confidence            578999999999999988888774 9999999998776  3345563222 23222222111       24799999999


Q ss_pred             CC
Q 025278          223 GK  224 (255)
Q Consensus       223 G~  224 (255)
                      |.
T Consensus        79 g~   80 (239)
T 2ekp_A           79 AV   80 (239)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.28  E-value=0.00072  Score=55.62  Aligned_cols=74  Identities=26%  Similarity=0.354  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc----CCC-EEE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL----GAD-LAI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~----g~~-~v~--~~~~~~-~~~-------~~~  213 (255)
                      .|+++||+||+|++|.+.++.+.. .|++|+++++++++.+.+. ++    +.. ..+  |-.+.+ ..+       ..+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSA-EGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            678999999999999998888777 4999999999988766542 22    222 223  322221 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|+++|.
T Consensus       111 ~iD~lvnnAG~  121 (281)
T 4dry_A          111 RLDLLVNNAGS  121 (281)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999999984

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.27  E-value=0.00098  Score=54.41  Aligned_cols=75  Identities=24%  Similarity=0.353  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-E--EcCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-A--IDYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v--~~~~~~~-~~~~-------~~~~d~  217 (255)
                      .+++++|+||++++|.+.++.+... |++|+++++++++++.+ ++++... .  .|-.+.. ..+.       .+++|+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   88 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARA-GARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDI   88 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999988887774 99999999998887665 4555322 2  2322221 1111       237999


Q ss_pred             EEECCCCc
Q 025278          218 VFDAVGKM  225 (255)
Q Consensus       218 vid~~G~~  225 (255)
                      +|+++|..
T Consensus        89 lv~nAg~~   96 (271)
T 3tzq_B           89 VDNNAAHS   96 (271)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99999843

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.26  E-value=0.00081  Score=53.72  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=50.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCC-EE--EcCCCcc-ccc-------cCCCccEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGAD-LA--IDYTKEN-IED-------LPEKFDVV  218 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~-~v--~~~~~~~-~~~-------~~~~~d~v  218 (255)
                      ++++||+||+|++|...+..+... |++|+++++++++++.+. +++.. ..  .|-.+.. ..+       ..+.+|++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   81 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVER-GHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELV   81 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEE
Confidence            678999999999999988877774 999999999998877653 34322 12  2222211 111       12478999


Q ss_pred             EECCCC
Q 025278          219 FDAVGK  224 (255)
Q Consensus       219 id~~G~  224 (255)
                      |+++|.
T Consensus        82 vnnAg~   87 (235)
T 3l6e_A           82 LHCAGT   87 (235)
T ss_dssp             EEECCC
T ss_pred             EECCCC
Confidence            999984

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.26  E-value=0.0011  Score=54.23  Aligned_cols=74  Identities=28%  Similarity=0.421  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHc---CCCEEE--cCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSL---GADLAI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~---g~~~v~--~~~~~~-~~~-------~~~~~  215 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+ +++   +.-..+  |-.+.. ..+       ..+++
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLE-AGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARL  106 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            578999999999999998888877 499999999998876544 333   211122  222211 111       12479


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|+++|.
T Consensus       107 D~lvnnAg~  115 (276)
T 2b4q_A          107 DILVNNAGT  115 (276)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.25  E-value=0.001  Score=55.19  Aligned_cols=75  Identities=27%  Similarity=0.339  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE-E--EcCCCcc-cccc-------CC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL-A--IDYTKEN-IEDL-------PE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~-~~~~-------~~  213 (255)
                      -.|+++||+||+|++|...+..+.. .|++|+++++++++++.+.    +.+... .  .|-.+.+ ..+.       .+
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFAR-RGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            4678999999999999998888777 4999999999988876542    234332 2  2222221 1111       23


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus       108 ~id~lvnnAg~  118 (301)
T 3tjr_A          108 GVDVVFSNAGI  118 (301)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999994

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.25  E-value=0.001  Score=53.30  Aligned_cols=75  Identities=25%  Similarity=0.323  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcC--CCEEE--cCCCccccc----------
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLG--ADLAI--DYTKENIED----------  210 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g--~~~v~--~~~~~~~~~----------  210 (255)
                      -.+++++|+||+|++|...+..+.. .|++|+++++++++++.+.    +.+  ...++  +.+..+..+          
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAA-HGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            3578999999999999998888777 4999999999988776542    233  12222  221122111          


Q ss_pred             cCCCccEEEECCCC
Q 025278          211 LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 ~~~~~d~vid~~G~  224 (255)
                      ..+++|++|++.|.
T Consensus        91 ~~g~id~lv~nAg~  104 (247)
T 3i1j_A           91 EFGRLDGLLHNASI  104 (247)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             hCCCCCEEEECCcc
Confidence            12379999999984

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.25  E-value=0.00088  Score=54.82  Aligned_cols=74  Identities=23%  Similarity=0.421  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCC-C--EEE--cCCCcc-cccc-------C
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGA-D--LAI--DYTKEN-IEDL-------P  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~-~--~v~--~~~~~~-~~~~-------~  212 (255)
                      .++++||+||+|++|...++.+.. .|++|++++++.++.+.+    ++.+. .  ..+  |..+.. +.+.       .
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQ-QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            578999999999999998888887 499999999998776544    22332 1  122  222221 1111       1


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus       110 g~iD~vi~~Ag~  121 (279)
T 1xg5_A          110 SGVDICINNAGL  121 (279)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999983

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.24  E-value=0.0015  Score=52.83  Aligned_cols=74  Identities=23%  Similarity=0.312  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc-----CCC-EEE--cCCCcc-cccc------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL-----GAD-LAI--DYTKEN-IEDL------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~-----g~~-~v~--~~~~~~-~~~~------~~  213 (255)
                      .+++++|+||+|++|...+..+... |++|+++++++++.+.+. ++     +.. ..+  |..+.. ....      ..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARN-GARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            5789999999999999988888774 999999999987765542 22     312 222  322221 1111      11


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        85 gid~lv~~Ag~   95 (260)
T 2z1n_A           85 GADILVYSTGG   95 (260)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            49999999984

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.24  E-value=0.0011  Score=53.27  Aligned_cols=74  Identities=22%  Similarity=0.398  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-hhHH-HHHHcCCCE-EE--cCCCcc-cccc-------CCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLD-LLRSLGADL-AI--DYTKEN-IEDL-------PEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-~~~~-~~~~~g~~~-v~--~~~~~~-~~~~-------~~~~d  216 (255)
                      .+++++|+||+|++|...+..+.. .|++|+++++++ ++.+ .+++.+... .+  |-.+.. ..+.       .+++|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAV-EGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   84 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999998888877 499999999987 6654 344555432 22  322221 1111       24799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|+++|.
T Consensus        85 ~lv~nAg~   92 (249)
T 2ew8_A           85 ILVNNAGI   92 (249)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.24  E-value=0.0013  Score=53.74  Aligned_cols=74  Identities=22%  Similarity=0.411  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cC-C
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LP-E  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~-~  213 (255)
                      .+++++|+||+|++|.+.++.+... |++|+++++++++++.+    ++.+... .+  |-.+.. ..+       .. +
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988888774 99999999998776543    2234332 22  322221 111       12 5


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|++.|.
T Consensus        99 ~id~lv~nAg~  109 (273)
T 1ae1_A           99 KLNILVNNAGV  109 (273)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            79999999984

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.23  E-value=0.0012  Score=52.51  Aligned_cols=73  Identities=18%  Similarity=0.285  Sum_probs=50.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEE--cCCCcc-cccc-------CCCccEEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAI--DYTKEN-IEDL-------PEKFDVVF  219 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~--~~~~~~-~~~~-------~~~~d~vi  219 (255)
                      +++++|+||+|++|...+..+.. .|.+|+++++++++.+.+. +++....+  |..+.. +.+.       .+++|++|
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHA-KGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            57899999999999998888877 4999999999988776553 44322233  222211 1111       13789999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      ++.|.
T Consensus        84 ~~Ag~   88 (234)
T 2ehd_A           84 NNAGV   88 (234)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99984

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.23  E-value=0.0015  Score=52.41  Aligned_cols=74  Identities=22%  Similarity=0.316  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-cc-------ccCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IE-------DLPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~-------~~~~~  214 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+    ++.+... .+  |-.+.. ..       +..+.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALAS-KGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998888877 499999999998876654    2334332 22  222211 11       11246


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        83 id~li~~Ag~   92 (247)
T 3lyl_A           83 IDILVNNAGI   92 (247)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999984

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.23  E-value=0.0018  Score=54.23  Aligned_cols=77  Identities=21%  Similarity=0.198  Sum_probs=53.5

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc-----C--CCEE--EcCCC-ccccccCCCccE
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL-----G--ADLA--IDYTK-ENIEDLPEKFDV  217 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~-----g--~~~v--~~~~~-~~~~~~~~~~d~  217 (255)
                      ...+++|||+||+|.+|...+..+... |.+|++++++.++.+.+.+.     +  ...+  .|..+ ..+.+..+++|+
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEH-GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence            346789999999999999998888774 89999999988776544321     2  2222  13222 223334458999


Q ss_pred             EEECCCCc
Q 025278          218 VFDAVGKM  225 (255)
Q Consensus       218 vid~~G~~  225 (255)
                      ||.++|..
T Consensus        87 vih~A~~~   94 (342)
T 1y1p_A           87 VAHIASVV   94 (342)
T ss_dssp             EEECCCCC
T ss_pred             EEEeCCCC
Confidence            99998843

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.22  E-value=0.00085  Score=54.95  Aligned_cols=72  Identities=18%  Similarity=0.369  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCC--CEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGA--DLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~--~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      .+++++|+| +|++|.++++.+... |.+|+++.++.+|.+.+ ++++.  .... .+.....+  +++|++|+++|...
T Consensus       118 ~~k~vlViG-aGg~g~a~a~~L~~~-G~~V~v~~R~~~~~~~la~~~~~~~~~~~-~~~~~~~~--~~~DivVn~t~~~~  192 (271)
T 1nyt_A          118 PGLRILLIG-AGGASRGVLLPLLSL-DCAVTITNRTVSRAEELAKLFAHTGSIQA-LSMDELEG--HEFDLIINATSSGI  192 (271)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHHTGGGSSEEE-CCSGGGTT--CCCSEEEECCSCGG
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHhhccCCeeE-ecHHHhcc--CCCCEEEECCCCCC
Confidence            578999999 599999999888885 79999999998886544 55553  1111 11111111  58999999999543

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.22  E-value=0.00077  Score=54.51  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCC-EEE--cCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGAD-LAI--DYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~-~v~--~~~~~~-~~~~-------~~~~d~  217 (255)
                      .+++++|+||++++|.+.++.+... |++|+++++++++.+.+ ++++.. ..+  |-.+.. ..+.       .+++|+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   84 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQE-GATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHG   84 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999988887774 99999999988776554 344422 222  222211 1111       237999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        85 lv~nAg~   91 (257)
T 3tpc_A           85 LVNCAGT   91 (257)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999994

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.22  E-value=0.0012  Score=53.55  Aligned_cols=74  Identities=23%  Similarity=0.372  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-H---HcCCCE-EE--cCCCcc-ccc-------cC-C
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-R---SLGADL-AI--DYTKEN-IED-------LP-E  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~---~~g~~~-v~--~~~~~~-~~~-------~~-~  213 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+ +   +.+... .+  |-.+.. ..+       .. +
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   86 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELAS-LGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   86 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999998888777 499999999998876543 2   234322 22  322221 111       12 5


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        87 ~id~lv~~Ag~   97 (260)
T 2ae2_A           87 KLNILVNNAGI   97 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999983

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.22  E-value=0.00082  Score=54.15  Aligned_cols=74  Identities=24%  Similarity=0.424  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCC-EE--EcCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGAD-LA--IDYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~-~v--~~~~~~~-~~~~-------~~~~d~  217 (255)
                      .|++++|+||++++|.+.++.+.. .|++|+++++++++.+.+. +++.. ..  .|-.+.. ..+.       .+++|+
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~   86 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAE-RGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDI   86 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            578999999999999998888777 4999999999988876653 34322 12  2332221 1111       247999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|++.|.
T Consensus        87 lv~nAg~   93 (248)
T 3op4_A           87 LVNNAGI   93 (248)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.22  E-value=0.0013  Score=53.46  Aligned_cols=74  Identities=16%  Similarity=0.278  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H----cCCC--EEE--cCCCcc-ccc-------cC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S----LGAD--LAI--DYTKEN-IED-------LP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~----~g~~--~v~--~~~~~~-~~~-------~~  212 (255)
                      .++++||+||++++|.+.++.+... |++|+++++++++.+.+. +    .+..  ..+  |-.+.+ ...       ..
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEA-GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999988887774 999999999988766542 2    3322  222  322221 111       12


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +.+|++|++.|.
T Consensus        86 g~id~lvnnAg~   97 (265)
T 3lf2_A           86 GCASILVNNAGQ   97 (265)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999999984

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.22  E-value=0.0016  Score=52.51  Aligned_cols=73  Identities=22%  Similarity=0.302  Sum_probs=50.2

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE-EE--cCCCcc-ccc-------cCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL-AI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~-v~--~~~~~~-~~~-------~~~~~  215 (255)
                      +++++|+||+|++|...+..+... |++|+++++++++.+.+.    +.+... .+  |..+.. ..+       ..+++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKD-GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999988888774 999999999987765442    234322 22  322221 111       12479


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|+++|.
T Consensus        81 d~lv~nAg~   89 (256)
T 1geg_A           81 DVIVNNAGV   89 (256)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.22  E-value=0.0012  Score=53.80  Aligned_cols=75  Identities=28%  Similarity=0.381  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HH----cCCCE-EE--cCCCcc-cccc-------C
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RS----LGADL-AI--DYTKEN-IEDL-------P  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~----~g~~~-v~--~~~~~~-~~~~-------~  212 (255)
                      -.+++++|+||+|++|...++.+.. .|++|+++++++++.+.+ ++    .+... .+  |..+.. ....       .
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAE-AGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3578999999999999998888877 499999999998776543 22    25332 22  322221 1111       2


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus        98 g~iD~lvnnAg~  109 (267)
T 1vl8_A           98 GKLDTVVNAAGI  109 (267)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            379999999984

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.21  E-value=0.0013  Score=53.97  Aligned_cols=75  Identities=17%  Similarity=0.306  Sum_probs=50.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE-E--cCCCcc-ccc-------cCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA-I--DYTKEN-IED-------LPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v-~--~~~~~~-~~~-------~~~  213 (255)
                      ..++++||+||++++|.+.+..+... |++|+++++++++.+.+    ++.+.... +  |-.+.. ..+       ..+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAAR-GIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999988877774 99999999998876654    22343322 2  222211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|+++|.
T Consensus       101 ~id~lv~nAg~  111 (279)
T 3sju_A          101 PIGILVNSAGR  111 (279)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            78999999984

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.21  E-value=0.0012  Score=53.88  Aligned_cols=75  Identities=23%  Similarity=0.368  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEEE---cCCCcc-ccc-------cCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLAI---DYTKEN-IED-------LPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v~---~~~~~~-~~~-------~~~  213 (255)
                      -.|+++||+||++++|...++.+... |++|+++++++++.+.+    ++.|....+   |-.+.. ..+       ..+
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVA-GARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            35789999999999999988887774 99999999998876554    233543322   222211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus       103 ~iD~lv~nAg~  113 (271)
T 4ibo_A          103 DVDILVNNAGI  113 (271)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999994

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.21  E-value=0.001  Score=55.07  Aligned_cols=76  Identities=17%  Similarity=0.245  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HH---cC-CC-EE--EcCCCc-c-ccc-------c
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RS---LG-AD-LA--IDYTKE-N-IED-------L  211 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~---~g-~~-~v--~~~~~~-~-~~~-------~  211 (255)
                      ..++++||+||++++|...++.+.. .|++|++++++.++.+.+ ++   .+ .. ..  .|-.+. . ...       .
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSS-NGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            3578999999999999998888777 499999999998876543 22   22 12 12  233332 1 111       1


Q ss_pred             CCCccEEEECCCCc
Q 025278          212 PEKFDVVFDAVGKM  225 (255)
Q Consensus       212 ~~~~d~vid~~G~~  225 (255)
                      .+++|++|+++|..
T Consensus        89 ~g~iD~lv~nAg~~  102 (311)
T 3o26_A           89 FGKLDILVNNAGVA  102 (311)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             CCCCCEEEECCccc
Confidence            24799999999953

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.20  E-value=0.0017  Score=52.64  Aligned_cols=74  Identities=23%  Similarity=0.405  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCC-EEE--cCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGAD-LAI--DYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~-~v~--~~~~~~-~~~~-------~~~~d~  217 (255)
                      .++++||+||+|++|...+..+.. .|++|+++++++++.+.+. ++... ..+  |..+.. ..+.       .+++|+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~   89 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDK-AGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDL   89 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            478999999999999998888877 4999999999988776553 34211 222  322211 1111       137999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        90 lv~~Ag~   96 (263)
T 3ak4_A           90 LCANAGV   96 (263)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.20  E-value=0.0014  Score=55.69  Aligned_cols=50  Identities=30%  Similarity=0.434  Sum_probs=43.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA  200 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v  200 (255)
                      -.|++|.|.| .|.+|+.+++.++.+ |++|++.+.++++.++++++|++.+
T Consensus       173 L~GktV~I~G-~GnVG~~~A~~l~~~-GakVvvsD~~~~~~~~a~~~ga~~v  222 (355)
T 1c1d_A          173 LDGLTVLVQG-LGAVGGSLASLAAEA-GAQLLVADTDTERVAHAVALGHTAV  222 (355)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCEEC
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHHC-CCEEEEEeCCccHHHHHHhcCCEEe
Confidence            5789999999 999999999999996 9999988888877667777887543

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.19  E-value=0.001  Score=53.68  Aligned_cols=74  Identities=30%  Similarity=0.365  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-EE--cCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-AI--DYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~-~~~~-------~~~~d~  217 (255)
                      .+++++|+||+|++|...+..+... |++|+++++++++.+.+ ++++... .+  |-.+.. ..+.       .+.+|+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   83 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGE-GAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4789999999999999988888774 99999999998877654 4455332 22  222211 1111       236899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        84 lv~~Ag~   90 (253)
T 1hxh_A           84 LVNNAGI   90 (253)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.19  E-value=0.00073  Score=55.58  Aligned_cols=74  Identities=27%  Similarity=0.397  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc---CCCEE-E--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL---GADLA-I--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~---g~~~v-~--~~~~~~-~~~-------~~~~  214 (255)
                      .|+++||+||++++|.+.++.+... |++|+++++++++++.+. ++   +.... +  |-.+.. ...       ..++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFARE-GAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988887774 999999999988876553 33   33222 2  222211 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        86 iD~lvnnAg~   95 (280)
T 3tox_A           86 LDTAFNNAGA   95 (280)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.19  E-value=0.0014  Score=54.86  Aligned_cols=74  Identities=20%  Similarity=0.345  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCC--C-EEE--cCCCcc-ccc-------cC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGA--D-LAI--DYTKEN-IED-------LP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~--~-~v~--~~~~~~-~~~-------~~  212 (255)
                      .+++|||+||+|++|...+..+.. .|++|++++++.++.+.+.    ..+.  . .++  |-.+.. +.+       ..
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLN-QGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            578999999999999998888877 4999999999998776542    2232  2 222  322221 111       12


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +.+|++|+++|.
T Consensus        86 g~id~lv~nAg~   97 (319)
T 3ioy_A           86 GPVSILCNNAGV   97 (319)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            478999999993

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.19  E-value=0.00065  Score=54.29  Aligned_cols=74  Identities=19%  Similarity=0.136  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      .+++|+|+||+|.+|...++.+...+ +.+|+++++++++.+.+ ..+...+ .|..+. .+.+..+++|+||.++|.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            46789999999999999888887733 78999999988766543 1123222 233221 233334589999999984

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.19  E-value=0.00063  Score=54.61  Aligned_cols=72  Identities=15%  Similarity=0.062  Sum_probs=49.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-e--cChhhHHHH-HHc-CCCEEEcCCCcc-----ccccCCCccEEEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAA-T--SSTAKLDLL-RSL-GADLAIDYTKEN-----IEDLPEKFDVVFD  220 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~--~~~~~~~~~-~~~-g~~~v~~~~~~~-----~~~~~~~~d~vid  220 (255)
                      +++++|+||+|++|...++.+... |++|+++ +  +++++.+.+ +++ +.+ +.+..+-.     ..+..+++|++|+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~g~iD~lv~   78 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQD-GYTVVCHDASFADAAERQRFESENPGTI-ALAEQKPERLVDATLQHGEAIDTIVS   78 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHT-TCEEEECCGGGGSHHHHHHHHHHSTTEE-ECCCCCGGGHHHHHGGGSSCEEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCEEEEecCCcCCHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            468999999999999988888774 9999999 6  888877655 344 432 23322211     1111347999999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      ++|.
T Consensus        79 ~Ag~   82 (244)
T 1zmo_A           79 NDYI   82 (244)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9984

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.19  E-value=0.0018  Score=52.94  Aligned_cols=65  Identities=26%  Similarity=0.389  Sum_probs=50.4

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      +++++|+| +|++|.+++..+... |.+++++.|+.+|.+.+.+++.. +....     +. ..+|+||+|++.
T Consensus       118 ~k~vlvlG-aGGaaraia~~L~~~-G~~v~V~nRt~~ka~~la~~~~~-~~~~~-----~l-~~~DiVInaTp~  182 (269)
T 3phh_A          118 YQNALILG-AGGSAKALACELKKQ-GLQVSVLNRSSRGLDFFQRLGCD-CFMEP-----PK-SAFDLIINATSA  182 (269)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCTTHHHHHHHTCE-EESSC-----CS-SCCSEEEECCTT
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHCCCe-EecHH-----Hh-ccCCEEEEcccC
Confidence            89999999 799999998888886 68899999999887665577743 33322     11 278999999873

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.18  E-value=0.00066  Score=55.37  Aligned_cols=74  Identities=15%  Similarity=0.260  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE-EEcCCCcc-ccc-------cCCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL-AIDYTKEN-IED-------LPEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~-v~~~~~~~-~~~-------~~~~~d~vid  220 (255)
                      .++++||+||+|++|...+..+... |++|++++++.++++.+....... ..|-.+.. ..+       ..+++|++|+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn   93 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEE-GHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVN   93 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            4689999999999999988877774 999999999987765443222111 12222211 111       1247999999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      ++|.
T Consensus        94 nAg~   97 (266)
T 3p19_A           94 NAGM   97 (266)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9994

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.18  E-value=0.0021  Score=52.37  Aligned_cols=75  Identities=17%  Similarity=0.299  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~  213 (255)
                      -.+++++|+||+|++|...+..+... |++|+++++++++.+.+    ++.+... .+  |-.+.+ ..+       ..+
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  107 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG  107 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            35789999999999999988888774 99999999988776543    2234332 22  222211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus       108 ~iD~li~~Ag~  118 (272)
T 1yb1_A          108 DVSILVNNAGV  118 (272)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCcEEEECCCc
Confidence            79999999984

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.18  E-value=0.00099  Score=54.55  Aligned_cols=74  Identities=27%  Similarity=0.392  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-EE--cCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-AI--DYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~-~~~~-------~~~~d~  217 (255)
                      .+++++|+||+|++|...++.+.. .|++|++++++.++.+.+ ++++... .+  |-.+.. ....       .+++|+
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~   82 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVA-AGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDV   82 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            468999999999999998888877 499999999998887665 3454322 22  222211 1111       237899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        83 lv~~Ag~   89 (281)
T 3m1a_A           83 LVNNAGR   89 (281)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.17  E-value=0.00074  Score=56.12  Aligned_cols=74  Identities=22%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHH-HHcCCC--EEEcCCCccccccCCCccEEEECCCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLL-RSLGAD--LAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~-~~~g~~--~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      -.+++++|+| +|++|.+++..+... |+ +++++.++.+|.+.+ ++++..  .+++.  .+..+..+++|+||+|++.
T Consensus       139 l~~~~vlVlG-aGg~g~aia~~L~~~-G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~--~~~~~~~~~aDivIn~t~~  214 (297)
T 2egg_A          139 LDGKRILVIG-AGGGARGIYFSLLST-AAERIDMANRTVEKAERLVREGDERRSAYFSL--AEAETRLAEYDIIINTTSV  214 (297)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTT-TCSEEEEECSSHHHHHHHHHHSCSSSCCEECH--HHHHHTGGGCSEEEECSCT
T ss_pred             CCCCEEEEEC-cHHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHhhhccCceeeH--HHHHhhhccCCEEEECCCC
Confidence            3678999999 799999998888875 76 888999998886554 566652  22221  1223334579999999985


Q ss_pred             cc
Q 025278          225 MC  226 (255)
Q Consensus       225 ~~  226 (255)
                      ..
T Consensus       215 ~~  216 (297)
T 2egg_A          215 GM  216 (297)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.17  E-value=0.0015  Score=53.01  Aligned_cols=74  Identities=24%  Similarity=0.318  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H---cCCCE-EE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S---LGADL-AI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~---~g~~~-v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+||+|++|...++.+... |++|+++++++++.+.+. +   .|... .+  |..+.. ...       ..++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   84 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999988888774 999999999987765442 2   24332 22  322221 111       1237


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|++.|.
T Consensus        85 id~lv~nAg~   94 (262)
T 1zem_A           85 IDFLFNNAGY   94 (262)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.17  E-value=0.0014  Score=53.37  Aligned_cols=74  Identities=22%  Similarity=0.332  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HH---c--CCCE-EE--cCCCcc-c---cccCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RS---L--GADL-AI--DYTKEN-I---EDLPEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~---~--g~~~-v~--~~~~~~-~---~~~~~~~d  216 (255)
                      .++++||+||++++|...++.+... |++|+++++++++.+.+ ++   .  +... .+  |..+.. .   .+..+++|
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAE-GANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            5789999999999999988877774 99999999998776543 22   2  2211 12  222211 1   11234799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|++.|.
T Consensus        88 ~lv~nAg~   95 (267)
T 3t4x_A           88 ILINNLGI   95 (267)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.16  E-value=0.0011  Score=53.91  Aligned_cols=74  Identities=26%  Similarity=0.442  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H----cCCCE-E--EcCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S----LGADL-A--IDYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~----~g~~~-v--~~~~~~~-~~~-------~~~  213 (255)
                      .++++||+||++++|.+.++.+... |++|+++++++++++.+. +    .+... .  .|-.+.+ ..+       ..+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAA-GARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988888774 999999999988766542 2    34332 2  2332222 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|++.|.
T Consensus        98 ~id~lv~nAg~  108 (266)
T 4egf_A           98 GLDVLVNNAGI  108 (266)
T ss_dssp             SCSEEEEECCC
T ss_pred             CCCEEEECCCc
Confidence            79999999984

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.15  E-value=0.0011  Score=53.23  Aligned_cols=73  Identities=16%  Similarity=0.165  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc---------ccccCCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN---------IEDLPEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~---------~~~~~~~~d~vid  220 (255)
                      .+++++|+||+|++|...++.+..  +.+|+++++++++.+.+.+......+..+-.+         ..+..+++|++|+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~   81 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR--DHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH   81 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT--TSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence            468999999999999998887754  78899999999888777654322222221111         0111247999999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      ++|.
T Consensus        82 ~Ag~   85 (245)
T 3e9n_A           82 AAAV   85 (245)
T ss_dssp             CC--
T ss_pred             CCCc
Confidence            9984

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.15  E-value=0.0018  Score=53.61  Aligned_cols=76  Identities=21%  Similarity=0.200  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcCCc--hHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEEEcCCCccccc---c-------C
Q 025278          149 SAGKSILVLGGAG--GVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLAIDYTKENIED---L-------P  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g--~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v~~~~~~~~~~---~-------~  212 (255)
                      -.++++||+||+|  ++|...++.+... |++|++++++++..+.+    ++.+....+..+-.+..+   .       .
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQ-GAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEW  106 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3578999999887  9999888877774 99999999987654443    334533333322222111   1       2


Q ss_pred             CCccEEEECCCCc
Q 025278          213 EKFDVVFDAVGKM  225 (255)
Q Consensus       213 ~~~d~vid~~G~~  225 (255)
                      +++|++|+++|..
T Consensus       107 g~iD~lVnnAG~~  119 (296)
T 3k31_A          107 GSLDFVVHAVAFS  119 (296)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCcC
Confidence            4799999999843

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.15  E-value=0.0018  Score=51.69  Aligned_cols=74  Identities=19%  Similarity=0.376  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-----cCCCE-EE--cCCCcc-cccc-------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-----LGADL-AI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-----~g~~~-v~--~~~~~~-~~~~-------~~  213 (255)
                      .+++++|+||+|++|...++.+.. .|.+|+++++++++.+.+.+     .+... .+  |..+.+ ..+.       .+
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLAS-AGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVD   84 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            478999999999999998888877 49999999999877654422     34332 22  222211 1111       24


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        85 ~~d~vi~~Ag~   95 (248)
T 2pnf_A           85 GIDILVNNAGI   95 (248)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.15  E-value=0.0014  Score=53.56  Aligned_cols=74  Identities=15%  Similarity=0.315  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCC-EE--EcCCCcc-cccc-------CCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGAD-LA--IDYTKEN-IEDL-------PEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~-~~~~-------~~~  214 (255)
                      .++++||+||++++|...+..+... |++|+++++++++.+.+    ++.+.. ..  .|-.+.. ....       .++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARR-GAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988877774 99999999998876544    233422 22  2332221 1111       237


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus       106 iD~lvnnAg~  115 (270)
T 3ftp_A          106 LNVLVNNAGI  115 (270)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.14  E-value=0.0013  Score=53.75  Aligned_cols=74  Identities=20%  Similarity=0.358  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH---cCCCE-EE--cCCCcc-cccc------CCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS---LGADL-AI--DYTKEN-IEDL------PEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~---~g~~~-v~--~~~~~~-~~~~------~~~~d  216 (255)
                      .|+++||+||++++|.+.++.+... |++|++++++++..+.+++   .+... .+  |-.+.+ ....      .+++|
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD  108 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARA-GAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVD  108 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCc
Confidence            5789999999999999988877774 9999999976544444433   33222 22  222211 1111      14799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|+++|.
T Consensus       109 ~lv~nAg~  116 (273)
T 3uf0_A          109 VLVNNAGI  116 (273)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.14  E-value=0.0022  Score=51.53  Aligned_cols=103  Identities=15%  Similarity=0.027  Sum_probs=68.8

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHHc-----CCCE--EEcCCCccccccCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRSL-----GADL--AIDYTKENIEDLPE  213 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~~-----g~~~--v~~~~~~~~~~~~~  213 (255)
                      .+....++++++||-.| +|. |..+..+++.++ +.++++++.+++..+.+++.     |.+.  ++..+..+..-..+
T Consensus        88 ~~~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  165 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAG-TGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA  165 (258)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred             HHHHcCCCCCCEEEEEC-CCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence            44566788999999999 664 888889988753 57999999999988887653     5322  22222111101124


Q ss_pred             CccEEEECCCCc-cceeeeeeccccCCceEEEEee
Q 025278          214 KFDVVFDAVGKM-CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       214 ~~d~vid~~G~~-~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      .+|+|+-..... .....+.+.++ ++|+++++..
T Consensus       166 ~~D~v~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~  199 (258)
T 2pwy_A          166 AYDGVALDLMEPWKVLEKAALALK-PDRFLVAYLP  199 (258)
T ss_dssp             CEEEEEEESSCGGGGHHHHHHHEE-EEEEEEEEES
T ss_pred             CcCEEEECCcCHHHHHHHHHHhCC-CCCEEEEEeC
Confidence            699999766544 33444466666 7899888654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.13  E-value=0.0023  Score=52.54  Aligned_cols=74  Identities=20%  Similarity=0.316  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHHH-H---c-CCCE-EE--cCCCcc-ccc-------cC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLR-S---L-GADL-AI--DYTKEN-IED-------LP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~~-~---~-g~~~-v~--~~~~~~-~~~-------~~  212 (255)
                      .++++||+||++++|...+..+... |++|+++++ ++++.+.+. +   . +... .+  |-.+.. ..+       ..
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKA-GANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            4689999999999999988877774 999999998 555554432 2   2 3222 22  222211 111       12


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus       103 g~iD~lv~nAg~  114 (281)
T 3v2h_A          103 GGADILVNNAGV  114 (281)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999994

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.13  E-value=0.0012  Score=53.46  Aligned_cols=74  Identities=24%  Similarity=0.324  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-EE--cCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-AI--DYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~-~~~~-------~~~~d~  217 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+ ++++... .+  |..+.. ..+.       .+++|+
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   89 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVG-QGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDV   89 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            578999999999999998888877 499999999988776654 4555332 22  222211 1111       137999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        90 li~~Ag~   96 (265)
T 2o23_A           90 AVNCAGI   96 (265)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999984

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.13  E-value=0.002  Score=52.00  Aligned_cols=42  Identities=24%  Similarity=0.197  Sum_probs=36.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      .+++++|+||+|++|...+..+.. .|++|+++++++++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAG-EGATVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCChHHHHHH
Confidence            468999999999999998888777 499999999998877654

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.13  E-value=0.0024  Score=52.71  Aligned_cols=74  Identities=23%  Similarity=0.412  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc----CCCE-EE--cCCCcc-cc-------ccCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL----GADL-AI--DYTKEN-IE-------DLPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~----g~~~-v~--~~~~~~-~~-------~~~~  213 (255)
                      .+++++|+||+|++|...+..+.. .|++|+++++++++.+.+. ++    +... .+  |-.+.. ..       +..+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSS-LGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  103 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999998888877 4999999999987765432 22    4332 22  222211 11       1124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|+++|.
T Consensus       104 ~id~li~~Ag~  114 (302)
T 1w6u_A          104 HPNIVINNAAG  114 (302)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999999983

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.13  E-value=0.0017  Score=52.62  Aligned_cols=77  Identities=21%  Similarity=0.291  Sum_probs=51.2

Q ss_pred             ccCCCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEEE--cCCCcc-ccc-------
Q 025278          147 AFSAGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLAI--DYTKEN-IED-------  210 (255)
Q Consensus       147 ~~~~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v~--~~~~~~-~~~-------  210 (255)
                      ....+++|||+||+  +++|...++.+.. .|++|++++++++..+.+    ++.+....+  |-.+.+ ...       
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKR-EGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHH-cCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence            34578999999988  9999998887777 499999998876544433    334432233  222221 111       


Q ss_pred             cCCCccEEEECCCC
Q 025278          211 LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 ~~~~~d~vid~~G~  224 (255)
                      ..+++|++|+++|.
T Consensus        89 ~~g~id~lv~nAg~  102 (271)
T 3ek2_A           89 HWDSLDGLVHSIGF  102 (271)
T ss_dssp             HCSCEEEEEECCCC
T ss_pred             HcCCCCEEEECCcc
Confidence            12479999999984

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.12  E-value=0.00042  Score=56.03  Aligned_cols=71  Identities=13%  Similarity=0.009  Sum_probs=49.5

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH---HcCCC-EEEcCCCcccccc-------CCCccEEEE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR---SLGAD-LAIDYTKENIEDL-------PEKFDVVFD  220 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~---~~g~~-~v~~~~~~~~~~~-------~~~~d~vid  220 (255)
                      ++++|+||+|++|...++.+... |++|+++++++++.+.+.   +.|.+ ..++  .......       .+++|++|+
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d--~~~v~~~~~~~~~~~g~iD~lv~   78 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEA-GHTVACHDESFKQKDELEAFAETYPQLKPMS--EQEPAELIEAVTSAYGQVDVLVS   78 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHT-TCEEEECCGGGGSHHHHHHHHHHCTTSEECC--CCSHHHHHHHHHHHHSCCCEEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCCcEEEEC--HHHHHHHHHHHHHHhCCCCEEEE
Confidence            47999999999999988888874 999999999887765543   23432 2222  2222211       247999999


Q ss_pred             CCCCc
Q 025278          221 AVGKM  225 (255)
Q Consensus       221 ~~G~~  225 (255)
                      +.|..
T Consensus        79 nAg~~   83 (254)
T 1zmt_A           79 NDIFA   83 (254)
T ss_dssp             ECCCC
T ss_pred             CCCcC
Confidence            99843

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.11  E-value=0.0014  Score=52.47  Aligned_cols=74  Identities=19%  Similarity=0.254  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcC---CCEEE--cCCCcc-cccc-------CCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLG---ADLAI--DYTKEN-IEDL-------PEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g---~~~v~--~~~~~~-~~~~-------~~~~  215 (255)
                      .+++++|+||+|++|...++.+... |++|+++++++++.+.+ +++.   .-..+  |..+.. +.+.       .+.+
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEE-GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999988888774 99999999998776654 3332   11222  222211 1111       1368


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|+++|.
T Consensus        84 d~li~~Ag~   92 (251)
T 1zk4_A           84 STLVNNAGI   92 (251)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.11  E-value=0.0013  Score=52.87  Aligned_cols=74  Identities=24%  Similarity=0.427  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------~~  213 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++ ++++.+.+    ++.+... .+  |-.+.. ..+.       .+
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAK-QGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG   81 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999998888877 4999999988 77766543    2234332 22  222221 1111       13


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        82 ~id~lv~nAg~   92 (246)
T 2uvd_A           82 QVDILVNNAGV   92 (246)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.11  E-value=0.0015  Score=53.51  Aligned_cols=74  Identities=27%  Similarity=0.339  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCC---CE-EE--cCCCcc-cccc-------
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGA---DL-AI--DYTKEN-IEDL-------  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~---~~-v~--~~~~~~-~~~~-------  211 (255)
                      .+++++|+||+|++|.+.++.+... |++|+++++++++.+.+    ++.+.   .. .+  |-.+.. ..+.       
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAA-GASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999988877774 99999999998876544    23332   11 12  222211 1111       


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+++|++|+++|.
T Consensus        89 ~g~id~lv~nAg~  101 (281)
T 3svt_A           89 HGRLHGVVHCAGG  101 (281)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2478999999985

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.10  E-value=0.0026  Score=51.13  Aligned_cols=72  Identities=19%  Similarity=0.325  Sum_probs=50.0

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE-cCCCccccc---cCCCccEEEECCC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI-DYTKENIED---LPEKFDVVFDAVG  223 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~---~~~~~d~vid~~G  223 (255)
                      ...+++++|+||+|++|...++.+.. .|++|++++++++..   ++++....+ |. ..+...   ...++|++|+++|
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~---~~~~~~~~~~D~-~~~~~~~~~~~~~iD~lv~~Ag   90 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQ-EGAEVTICARNEELL---KRSGHRYVVCDL-RKDLDLLFEKVKEVDILVLNAG   90 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHH---HHTCSEEEECCT-TTCHHHHHHHSCCCSEEEECCC
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCCHHHH---HhhCCeEEEeeH-HHHHHHHHHHhcCCCEEEECCC
Confidence            34678999999999999998888877 499999999987443   344522222 22 112211   1237999999998


Q ss_pred             C
Q 025278          224 K  224 (255)
Q Consensus       224 ~  224 (255)
                      .
T Consensus        91 ~   91 (249)
T 1o5i_A           91 G   91 (249)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.10  E-value=0.0017  Score=52.60  Aligned_cols=74  Identities=23%  Similarity=0.255  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCC-EEE--cCCCcc-cccc-------CCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGAD-LAI--DYTKEN-IEDL-------PEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~-~v~--~~~~~~-~~~~-------~~~~d~  217 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+ +++... ..+  |-.+.. ..+.       .+++|+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   84 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVA-EGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            578999999999999998888777 499999999998877654 344321 222  322211 1111       137999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        85 lv~~Ag~   91 (260)
T 1nff_A           85 LVNNAGI   91 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.09  E-value=0.0017  Score=52.26  Aligned_cols=72  Identities=24%  Similarity=0.356  Sum_probs=50.2

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-EE--cCCCcc-ccc-------cCCCccEEE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-AI--DYTKEN-IED-------LPEKFDVVF  219 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~-~~~-------~~~~~d~vi  219 (255)
                      ++++|+||+|++|.+.++.+.. .|++|+++++++++++.+ ++++... .+  |-.+.. ..+       ..+++|++|
T Consensus         1 k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv   79 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQ-QGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILV   79 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence            4789999999999998888877 499999999998887655 3444322 22  322221 111       123799999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      ++.|.
T Consensus        80 nnAg~   84 (248)
T 3asu_A           80 NNAGL   84 (248)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99984

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.09  E-value=0.0018  Score=52.33  Aligned_cols=75  Identities=19%  Similarity=0.247  Sum_probs=51.3

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------CC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------~~  213 (255)
                      -.+++++|+||+|++|...++.+.. .|++|+++++++++.+.+    ++.+... .+  |..+.. ....       .+
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   90 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQ-DGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHG   90 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999998888877 499999999998776543    2234332 22  222211 1111       23


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|++.|.
T Consensus        91 ~iD~lv~~Ag~  101 (260)
T 2zat_A           91 GVDILVSNAAV  101 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.09  E-value=0.0015  Score=52.80  Aligned_cols=74  Identities=23%  Similarity=0.370  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh-HHHH-HHc----CCCE-EE--cCCCcc-cccc-------C
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK-LDLL-RSL----GADL-AI--DYTKEN-IEDL-------P  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~-~~~~-~~~----g~~~-v~--~~~~~~-~~~~-------~  212 (255)
                      .+++++|+||+|++|...++.+... |++|+++++++++ .+.+ +++    +... .+  |-.+.. ..+.       .
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQ-GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHc-CCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4789999999999999988888774 9999999988776 5443 222    4332 22  222211 1111       1


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus        82 g~iD~lv~~Ag~   93 (260)
T 1x1t_A           82 GRIDILVNNAGI   93 (260)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999984

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.08  E-value=0.0018  Score=57.10  Aligned_cols=93  Identities=18%  Similarity=0.183  Sum_probs=68.7

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      .-.|++|.|+| .|.+|..+++.++.+ |.+|++.+++..+...+...|.. +     .++.+..+..|+|+-+++....
T Consensus       254 ~l~GktVgIIG-~G~IG~~vA~~l~~~-G~~Viv~d~~~~~~~~a~~~g~~-~-----~~l~ell~~aDiVi~~~~t~~l  325 (479)
T 1v8b_A          254 LISGKIVVICG-YGDVGKGCASSMKGL-GARVYITEIDPICAIQAVMEGFN-V-----VTLDEIVDKGDFFITCTGNVDV  325 (479)
T ss_dssp             CCTTSEEEEEC-CSHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHHTTTCE-E-----CCHHHHTTTCSEEEECCSSSSS
T ss_pred             ccCCCEEEEEe-eCHHHHHHHHHHHhC-cCEEEEEeCChhhHHHHHHcCCE-e-----cCHHHHHhcCCEEEECCChhhh
Confidence            35789999999 999999999999996 99999999998876555566663 2     1344556789999999865543


Q ss_pred             ee-eeeeccccCCceEEEEeecc
Q 025278          228 SI-VYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       228 ~~-~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .. ..+..++ ++..++.+|..+
T Consensus       326 I~~~~l~~MK-~gailiNvgrg~  347 (479)
T 1v8b_A          326 IKLEHLLKMK-NNAVVGNIGHFD  347 (479)
T ss_dssp             BCHHHHTTCC-TTCEEEECSSTT
T ss_pred             cCHHHHhhcC-CCcEEEEeCCCC
Confidence            32 2244455 677888888644

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.08  E-value=0.0014  Score=53.60  Aligned_cols=74  Identities=18%  Similarity=0.277  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-cccc------CCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IEDL------PEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~------~~~~  215 (255)
                      .|++++|+||++++|.+.++.+... |++|+++++++++.+.+    ++.+... .+  |..+.. ....      .+++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGA-GAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999988888774 99999999988765544    2234332 22  222221 1111      1479


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|+++|.
T Consensus       111 D~lvnnAg~  119 (275)
T 4imr_A          111 DILVINASA  119 (275)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999994

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.07  E-value=0.0013  Score=52.84  Aligned_cols=74  Identities=26%  Similarity=0.429  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------CCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------PEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------~~~  214 (255)
                      .+++++|+||+|++|...+..+... |++|+++++++++.+.+    ++.+... .+  |..+.. ..+.       .++
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   88 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999988888774 99999999998776543    2234332 22  222211 1111       137


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        89 ~d~vi~~Ag~   98 (255)
T 1fmc_A           89 VDILVNNAGG   98 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.0022  Score=52.93  Aligned_cols=74  Identities=23%  Similarity=0.401  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC---cEEEEecChhhHHHHH-Hc-----CCCE-E--EcCCCcc-ccc------
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA---SKVAATSSTAKLDLLR-SL-----GADL-A--IDYTKEN-IED------  210 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~---~vi~~~~~~~~~~~~~-~~-----g~~~-v--~~~~~~~-~~~------  210 (255)
                      .++++||+||++++|.+.+..+... |+   +|++++++.++++.+. ++     +... .  .|-.+.. ..+      
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~-G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  110 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEA-SNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP  110 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHc-CCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            5789999999999999987666553 55   8999999988876553 22     3222 2  2332221 111      


Q ss_pred             -cCCCccEEEECCCC
Q 025278          211 -LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 -~~~~~d~vid~~G~  224 (255)
                       ..+++|++|+++|.
T Consensus       111 ~~~g~iD~lVnnAG~  125 (287)
T 3rku_A          111 QEFKDIDILVNNAGK  125 (287)
T ss_dssp             GGGCSCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence             12479999999994

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.07  E-value=0.0018  Score=52.87  Aligned_cols=74  Identities=19%  Similarity=0.242  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHHH-Hc----CCCE-EE--cCCCc----c-cccc----
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLR-SL----GADL-AI--DYTKE----N-IEDL----  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~~-~~----g~~~-v~--~~~~~----~-~~~~----  211 (255)
                      .+++++|+||+|++|...+..+... |++|+++++ ++++.+.+. ++    +... .+  |-.+.    . ....    
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQ-GFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence            4689999999999999988888774 999999999 877765442 22    4322 22  33322    1 1111    


Q ss_pred             ---CCCccEEEECCCC
Q 025278          212 ---PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ---~~~~d~vid~~G~  224 (255)
                         .+++|++|+++|.
T Consensus        89 ~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           89 FRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence               1379999999983

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.06  E-value=0.0019  Score=52.06  Aligned_cols=74  Identities=22%  Similarity=0.373  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------CCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------PEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------~~~  214 (255)
                      .+++++|+||+|++|...+..+... |++|+++++++++.+.+    ++.+... .+  |..+.. ..+.       .++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEA-GARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGR   90 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988888774 99999999988766533    2334322 22  222211 1111       137


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        91 id~vi~~Ag~  100 (260)
T 3awd_A           91 VDILVACAGI  100 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999984

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.06  E-value=0.0011  Score=55.32  Aligned_cols=102  Identities=14%  Similarity=0.150  Sum_probs=67.2

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc----CCCEEEcCCCccccccCCCccEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL----GADLAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~d~v  218 (255)
                      ++...++++++||-+| +|. |..+..+++.. ++++++++.+++.++.+++.    |...-++....+..+..+.+|+|
T Consensus        83 ~~~~~~~~~~~vLDiG-cG~-G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v  159 (318)
T 2fk8_A           83 LDKLDLKPGMTLLDIG-CGW-GTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRI  159 (318)
T ss_dssp             HTTSCCCTTCEEEEES-CTT-SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEE
T ss_pred             HHhcCCCCcCEEEEEc-ccc-hHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEE
Confidence            3556788999999999 665 88889999885 88999999999988887653    32111111112223334679999


Q ss_pred             EEC-----CCC---ccceeeeeeccccCCceEEEEeec
Q 025278          219 FDA-----VGK---MCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       219 id~-----~G~---~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      +..     .+.   ......+.+.++ ++|++++.-..
T Consensus       160 ~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  196 (318)
T 2fk8_A          160 VSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQSSV  196 (318)
T ss_dssp             EEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEEEE
T ss_pred             EEeChHHhcCHHHHHHHHHHHHHhcC-CCcEEEEEEec
Confidence            976     321   122233355666 89998876554

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.06  E-value=0.0022  Score=50.84  Aligned_cols=72  Identities=22%  Similarity=0.344  Sum_probs=49.4

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCC--E-EEcCCCcc-c----cccCCCccEEEECC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGAD--L-AIDYTKEN-I----EDLPEKFDVVFDAV  222 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~--~-v~~~~~~~-~----~~~~~~~d~vid~~  222 (255)
                      +++||+||+|++|...+..+.. .|++|+++++++++++.+. +++..  . ..|..+.. .    .+..+.+|++|++.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~A   80 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDA-EGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSA   80 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECC
T ss_pred             CEEEEecCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeC
Confidence            4699999999999998888877 4999999999998887764 44322  1 12322221 1    11223459999999


Q ss_pred             CC
Q 025278          223 GK  224 (255)
Q Consensus       223 G~  224 (255)
                      |.
T Consensus        81 g~   82 (230)
T 3guy_A           81 GS   82 (230)
T ss_dssp             CC
T ss_pred             Cc
Confidence            83

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.06  E-value=0.0027  Score=52.49  Aligned_cols=76  Identities=26%  Similarity=0.261  Sum_probs=50.1

Q ss_pred             CCCCEEEEEcCCch--HHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEEE--cCCCcc-ccc-------cC
Q 025278          149 SAGKSILVLGGAGG--VGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLAI--DYTKEN-IED-------LP  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~--~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v~--~~~~~~-~~~-------~~  212 (255)
                      -.|+++||+||+|+  +|.+.++.+... |++|++++++++..+.+    ++.+....+  |-.+.. ..+       ..
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREA-GAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHT-TCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            46789999999855  999988877774 99999999886544333    234432333  222221 111       12


Q ss_pred             CCccEEEECCCCc
Q 025278          213 EKFDVVFDAVGKM  225 (255)
Q Consensus       213 ~~~d~vid~~G~~  225 (255)
                      +++|++|+++|..
T Consensus       108 g~iD~lVnnAG~~  120 (293)
T 3grk_A          108 GKLDFLVHAIGFS  120 (293)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCccC
Confidence            4799999999943

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.06  E-value=0.002  Score=52.72  Aligned_cols=75  Identities=17%  Similarity=0.302  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HH----cCCCE-EE--cCCCcc-ccc-------cC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RS----LGADL-AI--DYTKEN-IED-------LP  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~----~g~~~-v~--~~~~~~-~~~-------~~  212 (255)
                      -.|++++|+||++++|.+.++.+.. .|++|++++++.++.+.+ ++    .+... .+  |-.+.. ...       ..
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~  103 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMR-HGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF  103 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHT-TTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3578999999999999998888877 499999999998776543 22    34332 22  322221 111       12


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus       104 g~id~lv~nAg~  115 (277)
T 4fc7_A          104 GRIDILINCAAG  115 (277)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcC
Confidence            479999999983

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.06  E-value=0.003  Score=51.52  Aligned_cols=92  Identities=10%  Similarity=0.064  Sum_probs=63.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccce---
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCIS---  228 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~---  228 (255)
                      ++|||+|+ |.+|...+..+... |.+|+++++++++.+.+...+...+ ..+-.++.  .+++|+||.+++.....   
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~-~~D~~d~~--~~~~d~vi~~a~~~~~~~~~   80 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQ-GWRIIGTSRNPDQMEAIRASGAEPL-LWPGEEPS--LDGVTHLLISTAPDSGGDPV   80 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGG-TCEEEEEESCGGGHHHHHHTTEEEE-ESSSSCCC--CTTCCEEEECCCCBTTBCHH
T ss_pred             CcEEEECC-cHHHHHHHHHHHHC-CCEEEEEEcChhhhhhHhhCCCeEE-Eecccccc--cCCCCEEEECCCccccccHH
Confidence            58999996 99999999988884 9999999999998887776665433 22222333  56899999999843221   


Q ss_pred             -eeeeecccc---CCceEEEEeec
Q 025278          229 -IVYQKCDKF---QEKSLINFGLF  248 (255)
Q Consensus       229 -~~~~~~~~~---~~G~~v~~G~~  248 (255)
                       ......++.   .-.+++.++..
T Consensus        81 ~~~l~~a~~~~~~~~~~~v~~Ss~  104 (286)
T 3ius_A           81 LAALGDQIAARAAQFRWVGYLSTT  104 (286)
T ss_dssp             HHHHHHHHHHTGGGCSEEEEEEEG
T ss_pred             HHHHHHHHHhhcCCceEEEEeecc
Confidence             112222221   12678887764

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.06  E-value=0.0026  Score=53.22  Aligned_cols=101  Identities=18%  Similarity=0.149  Sum_probs=67.3

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCCC--EEEcCCCccccccCCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~  214 (255)
                      .++...++++++||-+| +|. |..+..+++... ..+|++++.+++.++.+++    .|.+  .++..+..+.....+.
T Consensus        67 l~~~l~~~~~~~VLDiG-cG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~  144 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIG-GGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (317)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHhcCCCCcCEEEEec-CCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence            34566788999999999 666 888888888742 2569999999998887754    3432  2222222111111357


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      +|+|+....-......+.+.++ ++|++++.
T Consensus       145 fD~Iv~~~~~~~~~~~~~~~Lk-pgG~lvi~  174 (317)
T 1dl5_A          145 YDVIFVTVGVDEVPETWFTQLK-EGGRVIVP  174 (317)
T ss_dssp             EEEEEECSBBSCCCHHHHHHEE-EEEEEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHhcC-CCcEEEEE
Confidence            9999987665555555566676 78887765

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.05  E-value=0.00039  Score=53.79  Aligned_cols=73  Identities=18%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~~  225 (255)
                      ++|+|+||+|.+|...++.+... |.+|+++++++++.+.....+...+ .|..+. .+.+..+++|+||.++|..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            68999999999999999888874 8999999998876532211122221 122221 2233345799999999854

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.05  E-value=0.002  Score=52.36  Aligned_cols=74  Identities=23%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHc-----CCC-EEE--cCCCcc-cccc-------C
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSL-----GAD-LAI--DYTKEN-IEDL-------P  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~-----g~~-~v~--~~~~~~-~~~~-------~  212 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+ +++     +.. ..+  |..+.. ..+.       .
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLL-KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            578999999999999998888877 499999999998776543 222     111 122  222211 1111       1


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +.+|++|+++|.
T Consensus        85 g~id~lv~~Ag~   96 (267)
T 2gdz_A           85 GRLDILVNNAGV   96 (267)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999999984

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.05  E-value=0.0015  Score=52.82  Aligned_cols=74  Identities=16%  Similarity=0.233  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHH-hcCCcEEEEecChhhHHHH----HHcCCC-EEEcCCCccc---ccc-------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKH-VFGASKVAATSSTAKLDLL----RSLGAD-LAIDYTKENI---EDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~-~~g~~vi~~~~~~~~~~~~----~~~g~~-~v~~~~~~~~---~~~-------~~  213 (255)
                      .+++++|+||+|++|...+..+.. . |++|++++++.++.+.+    ++.+.. ..+..+-.+.   ...       .+
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhc-CCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            578999999999999998877765 4 89999999988766543    222422 2222221111   111       13


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        82 ~id~li~~Ag~   92 (276)
T 1wma_A           82 GLDVLVNNAGI   92 (276)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999999984

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.04  E-value=0.0015  Score=55.39  Aligned_cols=75  Identities=20%  Similarity=0.351  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh-----------HHHHHHcCCCEE---EcCCCcc-ccc---
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK-----------LDLLRSLGADLA---IDYTKEN-IED---  210 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~-----------~~~~~~~g~~~v---~~~~~~~-~~~---  210 (255)
                      -.|+++||+||++++|.+.+..+... |++|+++++++++           .+.+++.|....   .|-.+.. ..+   
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~-Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~  121 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKD-GANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE  121 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHC-CCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence            35789999999999999988877774 9999999988764           223344553322   2332221 111   


Q ss_pred             ----cCCCccEEEECCCC
Q 025278          211 ----LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 ----~~~~~d~vid~~G~  224 (255)
                          ..+++|++|+++|.
T Consensus       122 ~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence                12479999999994

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.04  E-value=0.0027  Score=51.82  Aligned_cols=103  Identities=14%  Similarity=0.080  Sum_probs=67.8

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHHc-----C--CC--EEEcCCCcccccc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRSL-----G--AD--LAIDYTKENIEDL  211 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~~-----g--~~--~v~~~~~~~~~~~  211 (255)
                      .+....++++++||-.| +| .|.++..+++.++ +.+++.++.+++..+.+++.     |  .+  .++..+..+....
T Consensus        91 i~~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~  168 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAG-AG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP  168 (280)
T ss_dssp             HHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred             HHHHcCCCCCCEEEEEc-cc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence            34566789999999999 66 7888888888643 57899999999988877542     4  22  2222221111111


Q ss_pred             CCCccEEEECCCCc-cceeeeeeccccCCceEEEEee
Q 025278          212 PEKFDVVFDAVGKM-CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       212 ~~~~d~vid~~G~~-~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      .+.+|+|+-....+ .....+.+.++ ++|+++++..
T Consensus       169 ~~~~D~v~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~  204 (280)
T 1i9g_A          169 DGSVDRAVLDMLAPWEVLDAVSRLLV-AGGVLMVYVA  204 (280)
T ss_dssp             TTCEEEEEEESSCGGGGHHHHHHHEE-EEEEEEEEES
T ss_pred             CCceeEEEECCcCHHHHHHHHHHhCC-CCCEEEEEeC
Confidence            34699999765544 33444456666 7899888653

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.03  E-value=0.0017  Score=57.47  Aligned_cols=93  Identities=23%  Similarity=0.222  Sum_probs=67.4

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      .-.|++|.|+| .|.+|..+++.++.+ |++|++.+++..+...+...|...      .++.+..+..|+|+-+++....
T Consensus       274 ~L~GktVgIIG-~G~IG~~vA~~l~~~-G~~V~v~d~~~~~~~~a~~~G~~~------~~l~ell~~aDiVi~~~~t~~l  345 (494)
T 3d64_A          274 MIAGKIAVVAG-YGDVGKGCAQSLRGL-GATVWVTEIDPICALQAAMEGYRV------VTMEYAADKADIFVTATGNYHV  345 (494)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECSCHHHHHHHHTTTCEE------CCHHHHTTTCSEEEECSSSSCS
T ss_pred             ccCCCEEEEEc-cCHHHHHHHHHHHHC-CCEEEEEeCChHhHHHHHHcCCEe------CCHHHHHhcCCEEEECCCcccc
Confidence            35789999999 999999999999986 999999999987754455566532      1344556789999999864443


Q ss_pred             ee-eeeeccccCCceEEEEeecc
Q 025278          228 SI-VYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       228 ~~-~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .. ..+..++ ++..++.+|..+
T Consensus       346 I~~~~l~~MK-~gAilINvgrg~  367 (494)
T 3d64_A          346 INHDHMKAMR-HNAIVCNIGHFD  367 (494)
T ss_dssp             BCHHHHHHCC-TTEEEEECSSSS
T ss_pred             cCHHHHhhCC-CCcEEEEcCCCc
Confidence            22 2244455 567788887643

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.03  E-value=0.0011  Score=53.93  Aligned_cols=71  Identities=23%  Similarity=0.340  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc-c-------cccCCCccEEEEC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-I-------EDLPEKFDVVFDA  221 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~-~-------~~~~~~~d~vid~  221 (255)
                      .|+++||+||++++|.+.++.+... |++|+++++++++. ..+.+  ....|-.+.+ .       .+..+++|+++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~-~~~~~--~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnn   85 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLEL-GAQVLTTARARPEG-LPEEL--FVEADLTTKEGCAIVAEATRQRLGGVDVIVHM   85 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHT-TCEEEEEESSCCTT-SCTTT--EEECCTTSHHHHHHHHHHHHHHTSSCSEEEEC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHc-CCEEEEEECCchhC-CCcEE--EEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6899999999999999988887774 99999999865421 00111  1112322221 1       1113579999999


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      .|.
T Consensus        86 AG~   88 (261)
T 4h15_A           86 LGG   88 (261)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            883

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.02  E-value=0.0026  Score=51.40  Aligned_cols=73  Identities=21%  Similarity=0.265  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh--HHHH-HH---cCCCE-EE--cCCCcc-cccc-------CC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK--LDLL-RS---LGADL-AI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~--~~~~-~~---~g~~~-v~--~~~~~~-~~~~-------~~  213 (255)
                      +++++|+||+|++|...++.+... |++|+++++++++  .+.+ ++   .+... .+  |-.+.. ..+.       .+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAAD-GFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            578999999999999988877774 9999999988776  4433 22   24322 22  322221 1111       23


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|++.|.
T Consensus        81 ~iD~lv~nAg~   91 (258)
T 3a28_C           81 GFDVLVNNAGI   91 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.02  E-value=0.0027  Score=52.10  Aligned_cols=74  Identities=19%  Similarity=0.357  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~~  214 (255)
                      .+++++|+||+|++|...+..+.. .|.+|+++++++++.+.+    ++.+... .+  |..+.. +.+       ..++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~  121 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAK-SVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN  121 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTT-TSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            468999999999999998888877 499999988887776543    2234332 22  222211 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus       122 id~li~~Ag~  131 (285)
T 2c07_A          122 VDILVNNAGI  131 (285)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.02  E-value=0.0012  Score=54.06  Aligned_cols=74  Identities=22%  Similarity=0.405  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc---C---CC-EEE--cCCCcc-cccc-------
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL---G---AD-LAI--DYTKEN-IEDL-------  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~---g---~~-~v~--~~~~~~-~~~~-------  211 (255)
                      .+++++|+||+|++|...+..+.. .|++|+++++++++++.+. ++   .   .. ..+  |-.+.. ..+.       
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAR-EGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            468999999999999998888777 4999999999988776542 33   2   11 122  322221 1111       


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+++|++|+++|.
T Consensus        84 ~g~id~lv~~Ag~   96 (278)
T 1spx_A           84 FGKLDILVNNAGA   96 (278)
T ss_dssp             HSCCCEEEECCC-
T ss_pred             cCCCCEEEECCCC
Confidence            1379999999984

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.01  E-value=0.0043  Score=49.87  Aligned_cols=105  Identities=12%  Similarity=0.130  Sum_probs=70.3

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC----EEEcCCCccccccCCCccE
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD----LAIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~~~~d~  217 (255)
                      .+....++++.+||-+| +| .|..+..+++.. +.++++++.+++.++.+++....    .++..+..+.....+.+|+
T Consensus        47 ~~~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  123 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIG-SG-LGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDL  123 (266)
T ss_dssp             HTTTCCCCTTCEEEEET-CT-TSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEE
T ss_pred             HHHhcCCCCCCEEEEEC-CC-CCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEE
Confidence            34566788999999999 55 788999999985 89999999999999999875422    1222222222111357999


Q ss_pred             EEECCCCccc--------eeeeeeccccCCceEEEEeeccC
Q 025278          218 VFDAVGKMCI--------SIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       218 vid~~G~~~~--------~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |+....-...        ...+.+.++ ++|++++......
T Consensus       124 v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~  163 (266)
T 3ujc_A          124 IYSRDAILALSLENKNKLFQKCYKWLK-PTGTLLITDYCAT  163 (266)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEES
T ss_pred             EeHHHHHHhcChHHHHHHHHHHHHHcC-CCCEEEEEEeccC
Confidence            9975432221        233455566 7899888765443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.01  E-value=0.0021  Score=52.17  Aligned_cols=75  Identities=31%  Similarity=0.457  Sum_probs=50.2

Q ss_pred             CCCCEEEEEcCCc-hHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc---C-CC-EEE--cCCCcc-cccc-------
Q 025278          149 SAGKSILVLGGAG-GVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL---G-AD-LAI--DYTKEN-IEDL-------  211 (255)
Q Consensus       149 ~~g~~VlI~ga~g-~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~---g-~~-~v~--~~~~~~-~~~~-------  211 (255)
                      -.+++++|+||+| ++|...+..+.. .|++|++++++.++.+.+. ++   + .. ..+  |-.+.. ..+.       
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALL-EGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHH-CCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            3578999999876 899998887777 4999999999988766542 22   2 11 222  222211 1111       


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+.+|++|+++|.
T Consensus        99 ~g~id~li~~Ag~  111 (266)
T 3o38_A           99 AGRLDVLVNNAGL  111 (266)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCcEEEECCCc
Confidence            2378999999993

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.01  E-value=0.0021  Score=52.09  Aligned_cols=74  Identities=20%  Similarity=0.254  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~  213 (255)
                      .++++||+||+|++|.+.++.+.. .|++|+++ .+++++.+.+    ++.+... .+  |-.+.. ..+       ..+
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~-~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAE-NGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999998888877 49999987 7887766544    2334332 22  222211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        82 ~id~lv~nAg~   92 (258)
T 3oid_A           82 RLDVFVNNAAS   92 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999999983

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.01  E-value=0.0018  Score=53.24  Aligned_cols=42  Identities=26%  Similarity=0.440  Sum_probs=36.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      .+++++|+||+|++|...++.+... |.+|+++++++++++.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKM-GAHVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH
Confidence            4789999999999999988888774 99999999998877654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.01  E-value=0.0031  Score=51.04  Aligned_cols=74  Identities=24%  Similarity=0.375  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecChh---hHHHHH-HcCCCEEE--cCCCcc-cccc-------CC
Q 025278          150 AGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSSTA---KLDLLR-SLGADLAI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~~---~~~~~~-~~g~~~v~--~~~~~~-~~~~-------~~  213 (255)
                      .+++++|+||+  |++|...++.+... |++|++++++++   ..+.+. +.+....+  |-.+.. ..+.       .+
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEA-GAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHH-TCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            47899999998  99999988877774 999999998875   333332 33432333  222221 1111       13


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|++.|.
T Consensus        86 ~iD~lv~~Ag~   96 (261)
T 2wyu_A           86 GLDYLVHAIAF   96 (261)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.00  E-value=0.0027  Score=51.95  Aligned_cols=75  Identities=24%  Similarity=0.332  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-------------ChhhHHHH----HHcCCCEE---EcCCCcc-
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-------------STAKLDLL----RSLGADLA---IDYTKEN-  207 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-------------~~~~~~~~----~~~g~~~v---~~~~~~~-  207 (255)
                      -.|++++|+||++++|...++.+... |++|+++++             ++++++.+    ++.|....   .|-.+.. 
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~   91 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAE-GADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA   91 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            46789999999999999988887774 999999987             55555443    23343322   2322221 


Q ss_pred             cccc-------CCCccEEEECCCC
Q 025278          208 IEDL-------PEKFDVVFDAVGK  224 (255)
Q Consensus       208 ~~~~-------~~~~d~vid~~G~  224 (255)
                      ..+.       .+++|++|+++|.
T Consensus        92 v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           92 LRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            1111       2479999999984

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.00  E-value=0.0027  Score=51.94  Aligned_cols=35  Identities=29%  Similarity=0.426  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      .+++++|+||++++|.+.++.+... |++|++++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~-G~~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEA-GADIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCC
Confidence            5789999999999999988888774 9999999986

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.00  E-value=0.0027  Score=52.14  Aligned_cols=35  Identities=29%  Similarity=0.299  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      .|++++|+||++++|.+.++.+.. .|++|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~-~G~~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQ-EGADIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEecc
Confidence            578999999999999998888777 49999999876

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.00  E-value=0.0028  Score=51.79  Aligned_cols=36  Identities=25%  Similarity=0.254  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      -.|+++||+||++++|...+..+.. .|++|++++++
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~   46 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAA-DGADIIAVDLC   46 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHH-CCCeEEEEecc
Confidence            3578999999999999998887777 49999999876

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.00  E-value=0.0013  Score=52.50  Aligned_cols=75  Identities=16%  Similarity=0.280  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEecChhhHHHHHHc-CCC-EEE--cCCCcc-cccc-------CC--
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFG--ASKVAATSSTAKLDLLRSL-GAD-LAI--DYTKEN-IEDL-------PE--  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g--~~vi~~~~~~~~~~~~~~~-g~~-~v~--~~~~~~-~~~~-------~~--  213 (255)
                      .+++++|+||+|++|...++.+.. .|  .+|++++++.++.+.++++ +.. ..+  |..+.. ..+.       .+  
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~-~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   80 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVK-DKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHT-CTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHh-cCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence            367899999999999998888877 48  8999999998887766655 322 222  222211 1111       11  


Q ss_pred             CccEEEECCCCc
Q 025278          214 KFDVVFDAVGKM  225 (255)
Q Consensus       214 ~~d~vid~~G~~  225 (255)
                      ++|++|+++|..
T Consensus        81 ~id~li~~Ag~~   92 (250)
T 1yo6_A           81 GLSLLINNAGVL   92 (250)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCcEEEECCccc
Confidence            799999999843

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.00  E-value=0.0028  Score=50.07  Aligned_cols=96  Identities=10%  Similarity=0.049  Sum_probs=64.4

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcC------CcEEEEecChhhHHHHHHc----C-------CCEEEcCCCcccc
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFG------ASKVAATSSTAKLDLLRSL----G-------ADLAIDYTKENIE  209 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g------~~vi~~~~~~~~~~~~~~~----g-------~~~v~~~~~~~~~  209 (255)
                      .++++++||-+| +|. |..+..+++..+.      .+++.++.+++..+.+++.    +       --.++..+.....
T Consensus        81 ~~~~~~~VLdiG-~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  158 (227)
T 1r18_A           81 HLKPGARILDVG-SGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY  158 (227)
T ss_dssp             TCCTTCEEEEES-CTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC
T ss_pred             hCCCCCEEEEEC-CCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC
Confidence            578899999999 665 8888888887531      5899999999888777532    1       1122222221111


Q ss_pred             ccCCCccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          210 DLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       210 ~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      .....+|+|+...........+.+.++ ++|++++.
T Consensus       159 ~~~~~fD~I~~~~~~~~~~~~~~~~Lk-pgG~lvi~  193 (227)
T 1r18_A          159 PPNAPYNAIHVGAAAPDTPTELINQLA-SGGRLIVP  193 (227)
T ss_dssp             GGGCSEEEEEECSCBSSCCHHHHHTEE-EEEEEEEE
T ss_pred             CcCCCccEEEECCchHHHHHHHHHHhc-CCCEEEEE
Confidence            112479999988776666666677777 78887764

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.00  E-value=0.0018  Score=52.98  Aligned_cols=74  Identities=24%  Similarity=0.422  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H---cCC---C-EEE--cCCCcc-cccc-------
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S---LGA---D-LAI--DYTKEN-IEDL-------  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~---~g~---~-~v~--~~~~~~-~~~~-------  211 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++++.+. +   .+.   . ..+  |-.+.. ..+.       
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQ-EGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            578999999999999998888877 4999999999988776542 2   232   2 222  322221 1111       


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+++|++|+++|.
T Consensus        84 ~g~iD~lv~nAg~   96 (280)
T 1xkq_A           84 FGKIDVLVNNAGA   96 (280)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2379999999984

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.99  E-value=0.0029  Score=52.29  Aligned_cols=42  Identities=26%  Similarity=0.486  Sum_probs=35.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      .+++++|+||+|++|...+..+.. .|++|++++++.++.+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~~~   58 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLE-LGSNVVIASRKLERLKSA   58 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            578999999999999998888877 499999999998776544

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.99  E-value=0.0031  Score=53.32  Aligned_cols=77  Identities=16%  Similarity=0.205  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHH-HcC---CCEE-EcCCCc-cccccCCCccEEEEC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLR-SLG---ADLA-IDYTKE-NIEDLPEKFDVVFDA  221 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~-~~g---~~~v-~~~~~~-~~~~~~~~~d~vid~  221 (255)
                      -.+++|||+||+|.+|...++.+...+|. +|+++++++++...+. ++.   ...+ .|..+. .+.+..+++|+||.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~   98 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHA   98 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEEC
Confidence            45789999999999999988877763276 8999999988776553 332   2111 222222 223345689999999


Q ss_pred             CCCc
Q 025278          222 VGKM  225 (255)
Q Consensus       222 ~G~~  225 (255)
                      +|..
T Consensus        99 Aa~~  102 (344)
T 2gn4_A           99 AALK  102 (344)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9843

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.99  E-value=0.0028  Score=52.50  Aligned_cols=75  Identities=20%  Similarity=0.291  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC------------hhhHHHH----HHcCCCEE---EcCCCcc-c
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS------------TAKLDLL----RSLGADLA---IDYTKEN-I  208 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~------------~~~~~~~----~~~g~~~v---~~~~~~~-~  208 (255)
                      -.|++++|+||++++|.+.++.+... |++|++++++            .++++.+    ++.|....   .|..+.. .
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLARE-GADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM  104 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence            35789999999999999988877774 9999999876            4444332    34454332   2222221 1


Q ss_pred             cc-------cCCCccEEEECCCC
Q 025278          209 ED-------LPEKFDVVFDAVGK  224 (255)
Q Consensus       209 ~~-------~~~~~d~vid~~G~  224 (255)
                      .+       ..+.+|++|+++|.
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            11       12479999999983

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.99  E-value=0.0022  Score=52.30  Aligned_cols=75  Identities=23%  Similarity=0.359  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH----HHcCCCE-EE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL----RSLGADL-AI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+||++++|.+.++.+... |++|+++++ +.++.+.+    ++.+... .+  |-.+.. ...       ..+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g  105 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAA-GAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWG  105 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988877774 999999887 55554433    3344332 22  222221 111       123


Q ss_pred             CccEEEECCCCc
Q 025278          214 KFDVVFDAVGKM  225 (255)
Q Consensus       214 ~~d~vid~~G~~  225 (255)
                      ++|++|+++|..
T Consensus       106 ~id~lv~nAg~~  117 (269)
T 4dmm_A          106 RLDVLVNNAGIT  117 (269)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            799999999843

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.98  E-value=0.0029  Score=49.86  Aligned_cols=97  Identities=10%  Similarity=0.071  Sum_probs=65.9

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcC------CcEEEEecChhhHHHHHHc----C-----C--CEEEcCCCcccc
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFG------ASKVAATSSTAKLDLLRSL----G-----A--DLAIDYTKENIE  209 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g------~~vi~~~~~~~~~~~~~~~----g-----~--~~v~~~~~~~~~  209 (255)
                      .++++++||-+| +|. |..+..+++.. +      .+++.++.+++..+.+++.    +     .  -.++..+.....
T Consensus        77 ~~~~~~~VLdiG-~G~-G~~~~~la~~~-~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  153 (227)
T 2pbf_A           77 VLKPGSRAIDVG-SGS-GYLTVCMAIKM-NVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVN  153 (227)
T ss_dssp             TSCTTCEEEEES-CTT-SHHHHHHHHHT-TTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCC
T ss_pred             hCCCCCEEEEEC-CCC-CHHHHHHHHHh-cccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcc
Confidence            578899999999 665 88888898874 4      5899999999988877542    3     1  122222221111


Q ss_pred             ----ccCCCccEEEECCCCccceeeeeeccccCCceEEEEee
Q 025278          210 ----DLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       210 ----~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                          .....+|+|+...........+.+.++ ++|++++.-.
T Consensus       154 ~~~~~~~~~fD~I~~~~~~~~~~~~~~~~Lk-pgG~lv~~~~  194 (227)
T 2pbf_A          154 EEEKKELGLFDAIHVGASASELPEILVDLLA-ENGKLIIPIE  194 (227)
T ss_dssp             HHHHHHHCCEEEEEECSBBSSCCHHHHHHEE-EEEEEEEEEE
T ss_pred             cccCccCCCcCEEEECCchHHHHHHHHHhcC-CCcEEEEEEc
Confidence                112469999988776666666667777 7888776543

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.98  E-value=0.0019  Score=53.50  Aligned_cols=74  Identities=23%  Similarity=0.441  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCC---C-EEE--cCCCcc-cccc-------
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGA---D-LAI--DYTKEN-IEDL-------  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~---~-~v~--~~~~~~-~~~~-------  211 (255)
                      .+++++|+||+|++|...+..+... |++|+++++++++.+.+.    +.+.   . ..+  |-.+.. ..+.       
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999988888774 999999999988765542    2232   2 222  222221 1111       


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+++|++|+++|.
T Consensus       104 ~g~iD~lvnnAG~  116 (297)
T 1xhl_A          104 FGKIDILVNNAGA  116 (297)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2379999999984

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.98  E-value=0.0019  Score=53.18  Aligned_cols=74  Identities=18%  Similarity=0.336  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh-------H----HHHHHcCCCEE-E--cCCCcc-ccc----
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK-------L----DLLRSLGADLA-I--DYTKEN-IED----  210 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~-------~----~~~~~~g~~~v-~--~~~~~~-~~~----  210 (255)
                      .+++++|+||++++|...++.+.. .|++|+++++++++       +    +.+++.+.... +  |-.+.. ..+    
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAA-DGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHT-TTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            578999999999999998888777 49999999988762       2    22334453322 2  322221 111    


Q ss_pred             ---cCCCccEEEECCCC
Q 025278          211 ---LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 ---~~~~~d~vid~~G~  224 (255)
                         ..+.+|++|+++|.
T Consensus        87 ~~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           87 TVEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHHSCCSEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence               12379999999984

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.96  E-value=0.002  Score=52.19  Aligned_cols=74  Identities=24%  Similarity=0.419  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-cccc--------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IEDL--------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~--------~~  213 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+    ++.+... .+  |..+.+ ..+.        .+
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   91 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAG-FGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   91 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            568999999999999998888877 499999999988776543    2234332 22  222211 1111        15


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        92 ~id~li~~Ag~  102 (266)
T 1xq1_A           92 KLDILINNLGA  102 (266)
T ss_dssp             CCSEEEEECCC
T ss_pred             CCcEEEECCCC
Confidence            79999999984

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.96  E-value=0.0015  Score=52.42  Aligned_cols=74  Identities=26%  Similarity=0.381  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC-hhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS-TAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~-~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------~~  213 (255)
                      .+++++|+||+|++|...+..+.. .|.+|++++++ +++.+.+    ++.+... .+  |..+.. ..+.       .+
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFAR-AGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFG   84 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999998888877 49999999988 6665543    2224321 22  222211 1111       13


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        85 ~id~vi~~Ag~   95 (258)
T 3afn_B           85 GIDVLINNAGG   95 (258)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.96  E-value=0.0014  Score=53.02  Aligned_cols=76  Identities=18%  Similarity=0.290  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcC---CcEEEEecChhhHHHHHHc---CCC-EEE--cCCCcc-ccccC------
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFG---ASKVAATSSTAKLDLLRSL---GAD-LAI--DYTKEN-IEDLP------  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g---~~vi~~~~~~~~~~~~~~~---g~~-~v~--~~~~~~-~~~~~------  212 (255)
                      ..+++++|+||+|++|...++.+... |   .+|++++++.++.+.++++   +.. ..+  |-.+.+ ..+..      
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~-G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNL-PQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTS-SSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhc-CCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            45689999999999999988888774 7   8999999987755444332   322 222  222221 11111      


Q ss_pred             -C--CccEEEECCCCc
Q 025278          213 -E--KFDVVFDAVGKM  225 (255)
Q Consensus       213 -~--~~d~vid~~G~~  225 (255)
                       +  ++|++|+++|..
T Consensus        98 ~g~~~id~li~~Ag~~  113 (267)
T 1sny_A           98 TKDQGLNVLFNNAGIA  113 (267)
T ss_dssp             HGGGCCSEEEECCCCC
T ss_pred             cCCCCccEEEECCCcC
Confidence             1  699999999843

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.96  E-value=0.0029  Score=51.33  Aligned_cols=74  Identities=26%  Similarity=0.384  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecCh---hhHHHHH-HcCCCEEE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSST---AKLDLLR-SLGADLAI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~---~~~~~~~-~~g~~~v~--~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+||+  |++|...++.+.. .|++|+++++++   +..+.+. +.+....+  |-.+.. ..+       ..+
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHR-EGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHH-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHH-CCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            57899999998  9999998888877 499999999876   2333332 23422233  332221 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        87 ~iD~lv~~Ag~   97 (265)
T 1qsg_A           87 KFDGFVHSIGF   97 (265)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.95  E-value=0.0032  Score=52.04  Aligned_cols=100  Identities=11%  Similarity=0.127  Sum_probs=68.9

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCCCc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPEKF  215 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~  215 (255)
                      ++...++++++||-+| +|. |..+..+++.. +.++++++.+++.++.+++    .|..   .++..   +..+..+.+
T Consensus        65 ~~~~~~~~~~~vLDiG-cG~-G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~f  138 (302)
T 3hem_A           65 LDKLNLEPGMTLLDIG-CGW-GSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ---GWEEFDEPV  138 (302)
T ss_dssp             HHTTCCCTTCEEEEET-CTT-SHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC---CGGGCCCCC
T ss_pred             HHHcCCCCcCEEEEee-ccC-cHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC---CHHHcCCCc
Confidence            3566789999999999 664 88999999985 7999999999998887754    3422   12222   222335679


Q ss_pred             cEEEECCCCc---------------cceeeeeeccccCCceEEEEeecc
Q 025278          216 DVVFDAVGKM---------------CISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       216 d~vid~~G~~---------------~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      |+|+-.-.-.               .....+.+.++ ++|++++.....
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~  186 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHTITI  186 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC-TTCEEEEEEEEC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcC-CCcEEEEEEEec
Confidence            9999653211               22334466677 899999877643

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.95  E-value=0.0015  Score=53.28  Aligned_cols=72  Identities=22%  Similarity=0.322  Sum_probs=48.2

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE--EcCCCcc-ccc-------cCCCcc
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA--IDYTKEN-IED-------LPEKFD  216 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v--~~~~~~~-~~~-------~~~~~d  216 (255)
                      ....+++|||+||++++|.+.++.+... |++|+++++++++..     +....  .|-.+.. ..+       ..+++|
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   83 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRY-GAKVVSVSLDEKSDV-----NVSDHFKIDVTNEEEVKEAVEKTTKKYGRID   83 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCC--CT-----TSSEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCchhcc-----CceeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            3457899999999999999988887774 999999998876542     11122  2322221 111       124799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|+++|.
T Consensus        84 ~lv~nAg~   91 (269)
T 3vtz_A           84 ILVNNAGI   91 (269)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999984

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.95  E-value=0.0032  Score=51.21  Aligned_cols=74  Identities=30%  Similarity=0.524  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCC--C-EEE--cCCCcc-cccc-------CCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGA--D-LAI--DYTKEN-IEDL-------PEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~--~-~v~--~~~~~~-~~~~-------~~~~  215 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+ ++++.  . ..+  |..+.. +.+.       .+++
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   93 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVR-YGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   93 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999998888877 499999999988766544 34432  1 222  222211 1111       1379


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|++.|.
T Consensus        94 d~li~~Ag~  102 (278)
T 2bgk_A           94 DIMFGNVGV  102 (278)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999984

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.94  E-value=0.0028  Score=50.73  Aligned_cols=73  Identities=19%  Similarity=0.256  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc----CCC-EEE--cCCCcc-cccc-------CCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL----GAD-LAI--DYTKEN-IEDL-------PEK  214 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~----g~~-~v~--~~~~~~-~~~~-------~~~  214 (255)
                      +++++|+||+|++|...+..+... |++|+++++++++.+.+. ++    +.. ..+  |..+.. ..+.       .++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLAR-GDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            578999999999999988887774 899999999988766542 33    322 222  222211 1111       137


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        81 id~li~~Ag~   90 (250)
T 2cfc_A           81 IDVLVNNAGI   90 (250)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.94  E-value=0.0023  Score=52.32  Aligned_cols=72  Identities=18%  Similarity=0.285  Sum_probs=49.8

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCC--C-EEE--cCCCcc-cc-------ccCCCccE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGA--D-LAI--DYTKEN-IE-------DLPEKFDV  217 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~--~-~v~--~~~~~~-~~-------~~~~~~d~  217 (255)
                      ++++|+||+|++|...++.+.. .|++|+++++++++++.+. ++..  . ..+  |-.+.. ..       +..+.+|+
T Consensus        22 k~vlVTGas~gIG~aia~~La~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  100 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAE-AGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRG  100 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence            7899999999999998888877 4999999999988876553 3321  1 222  222221 11       11246899


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|++.|.
T Consensus       101 lvnnAG~  107 (272)
T 2nwq_A          101 LINNAGL  107 (272)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.94  E-value=0.0032  Score=51.55  Aligned_cols=36  Identities=28%  Similarity=0.268  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      -.|+++||+||++++|...++.+.. .|++|++++++
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~~~   43 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAE-EGADIILFDIC   43 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHH-CCCeEEEEccc
Confidence            3578999999999999998888777 49999999876

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.94  E-value=0.0028  Score=52.32  Aligned_cols=74  Identities=22%  Similarity=0.341  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH-HHH----HHcCCCEE-E--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL-DLL----RSLGADLA-I--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~-~~~----~~~g~~~v-~--~~~~~~-~~~-------~~~  213 (255)
                      .|+++||+||+|++|.+.++.+... |++|+++++++++. +.+    ++.|.... +  |-.+.. ..+       ..+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  124 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKE-GANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG  124 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988888774 99999999876532 222    33454332 2  222221 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|+++|.
T Consensus       125 ~iD~lvnnAg~  135 (291)
T 3ijr_A          125 SLNILVNNVAQ  135 (291)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.94  E-value=0.0023  Score=52.30  Aligned_cols=38  Identities=26%  Similarity=0.455  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK  188 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~  188 (255)
                      .+++++|+||++++|.+.++.+... |++|++++++.++
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~   42 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARD-GANVAIAAKSAVA   42 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCCSC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeccchh
Confidence            5789999999999999988877774 9999999987653

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.94  E-value=0.0039  Score=51.07  Aligned_cols=69  Identities=28%  Similarity=0.355  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHH-HHcCC--CEEEcCCCccccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLL-RSLGA--DLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~-~~~g~--~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      .+++++|+| +|++|.+++..+... |+ +++++.|+.+|.+.+ ++++.  ..+....  +...  ..+|+||+|++.
T Consensus       119 ~~k~~lvlG-aGg~~~aia~~L~~~-G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~--~l~~--~~~DivInaTp~  191 (272)
T 3pwz_A          119 RNRRVLLLG-AGGAVRGALLPFLQA-GPSELVIANRDMAKALALRNELDHSRLRISRYE--ALEG--QSFDIVVNATSA  191 (272)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHCCTTEEEECSG--GGTT--CCCSEEEECSSG
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHH--Hhcc--cCCCEEEECCCC
Confidence            688999999 799999988888775 74 888899999887654 55553  1223221  1111  579999999873

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.94  E-value=0.0033  Score=51.34  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS  184 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~  184 (255)
                      -.|++++|+||++++|.+.++.+... |++|+++++
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~-G~~V~~~~r   43 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAE-GADIIAVDI   43 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEec
Confidence            35789999999999999988887774 999999987

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.93  E-value=0.0014  Score=54.73  Aligned_cols=88  Identities=23%  Similarity=0.267  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++.++ +.+.++|++..      +..+.....|+|+-++.......
T Consensus       141 ~g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~d~~~~~-~~~~~~g~~~~------~l~ell~~aDvV~l~~p~~~~t~  211 (307)
T 1wwk_A          141 EGKTIGIIG-FGRIGYQVAKIANAL-GMNILLYDPYPNE-ERAKEVNGKFV------DLETLLKESDVVTIHVPLVESTY  211 (307)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCCH-HHHHHTTCEEC------CHHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCceEEEEc-cCHHHHHHHHHHHHC-CCEEEEECCCCCh-hhHhhcCcccc------CHHHHHhhCCEEEEecCCChHHh
Confidence            578999999 999999999999985 9999999998776 56677786431      23333446899999987433211


Q ss_pred             e-----eeeccccCCceEEEEee
Q 025278          230 V-----YQKCDKFQEKSLINFGL  247 (255)
Q Consensus       230 ~-----~~~~~~~~~G~~v~~G~  247 (255)
                      .     .+..++ +++.++.+|.
T Consensus       212 ~li~~~~l~~mk-~ga~lin~ar  233 (307)
T 1wwk_A          212 HLINEERLKLMK-KTAILINTSR  233 (307)
T ss_dssp             TCBCHHHHHHSC-TTCEEEECSC
T ss_pred             hhcCHHHHhcCC-CCeEEEECCC
Confidence            1     233444 5677777765

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.93  E-value=0.0039  Score=51.12  Aligned_cols=75  Identities=17%  Similarity=0.244  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------C
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------P  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------~  212 (255)
                      ..+++++|+||++++|.+.+..+.. .|++|+++++ ++++.+.+    ++.|... .+  |-.+.. ..+.       .
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAA-SGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHH-CCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4678999999999999998888877 4999999985 66655433    3344332 22  322221 1111       2


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus       106 g~iD~lvnnAg~  117 (280)
T 4da9_A          106 GRIDCLVNNAGI  117 (280)
T ss_dssp             SCCCEEEEECC-
T ss_pred             CCCCEEEECCCc
Confidence            379999999985

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.92  E-value=0.0036  Score=51.05  Aligned_cols=74  Identities=19%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecChh---hHHHHH-HcCCCEEE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSSTA---KLDLLR-SLGADLAI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~~---~~~~~~-~~g~~~v~--~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+||+  |++|...++.+... |++|++++++++   ..+.++ +.+....+  |-.+.. ..+       ..+
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            47899999998  99999988888774 999999998875   333332 33422222  322221 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|++.|.
T Consensus        84 ~id~lv~nAg~   94 (275)
T 2pd4_A           84 SLDFIVHSVAF   94 (275)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            78999999984

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.92  E-value=0.003  Score=51.03  Aligned_cols=73  Identities=19%  Similarity=0.361  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-H---cCCCE-EE--cCCCcc-cc----cc----CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-S---LGADL-AI--DYTKEN-IE----DL----PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~---~g~~~-v~--~~~~~~-~~----~~----~~  213 (255)
                      .+++++|+||+|++|...++.+... |++|+++++++++.+.+. +   .+... .+  |-.+.. ..    ..    .+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   82 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKA-GATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG   82 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4789999999999999988888774 999999999988765442 2   24322 22  322221 11    11    34


Q ss_pred             CccEEEECCC
Q 025278          214 KFDVVFDAVG  223 (255)
Q Consensus       214 ~~d~vid~~G  223 (255)
                      .+|++|++.|
T Consensus        83 ~id~lvnnAg   92 (260)
T 2qq5_A           83 RLDVLVNNAY   92 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CceEEEECCc
Confidence            6899999995

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.91  E-value=0.0019  Score=52.14  Aligned_cols=74  Identities=26%  Similarity=0.346  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh--HHHHHHcCCCEE-E--cCCCcc-cccc-------CCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK--LDLLRSLGADLA-I--DYTKEN-IEDL-------PEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~--~~~~~~~g~~~v-~--~~~~~~-~~~~-------~~~~d  216 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++  .+.+++.+.... +  |..+.. ..+.       .+++|
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLAR-AGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVD   81 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            468999999999999998888877 49999999887652  122233343322 2  222211 1111       13799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|++.|.
T Consensus        82 ~lv~~Ag~   89 (255)
T 2q2v_A           82 ILVNNAGI   89 (255)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999983

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.91  E-value=0.00072  Score=55.79  Aligned_cols=71  Identities=27%  Similarity=0.341  Sum_probs=49.2

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHH-HHcC-----CCE-EEcCCCccccccCCCccEEEE
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLL-RSLG-----ADL-AIDYTKENIEDLPEKFDVVFD  220 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~-~~~g-----~~~-v~~~~~~~~~~~~~~~d~vid  220 (255)
                      -.+++++|+| +|++|.+++..+... |+ +++++.|+.+|.+.+ ++++     ... .++  .++..+....+|+||+
T Consensus       125 l~~k~vlVlG-aGG~g~aia~~L~~~-G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~--~~~l~~~l~~~DiVIn  200 (283)
T 3jyo_A          125 AKLDSVVQVG-AGGVGNAVAYALVTH-GVQKLQVADLDTSRAQALADVINNAVGREAVVGVD--ARGIEDVIAAADGVVN  200 (283)
T ss_dssp             CCCSEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEEC--STTHHHHHHHSSEEEE
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcC--HHHHHHHHhcCCEEEE
Confidence            4678999999 699999988888875 77 688899998887654 3432     111 121  1223233347899999


Q ss_pred             CCC
Q 025278          221 AVG  223 (255)
Q Consensus       221 ~~G  223 (255)
                      |++
T Consensus       201 aTp  203 (283)
T 3jyo_A          201 ATP  203 (283)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            986

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.91  E-value=0.0036  Score=51.38  Aligned_cols=74  Identities=18%  Similarity=0.314  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecChh---hHHHHH-HcCCCEEE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSSTA---KLDLLR-SLGADLAI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~~---~~~~~~-~~g~~~v~--~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+||+  |++|...+..+... |++|++++++++   ..+.++ +.+....+  |-.+.. ...       ..+
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHRE-GAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            57899999998  89999988887774 999999998875   233332 23422222  322221 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|++.|.
T Consensus        99 ~iD~lv~~Ag~  109 (285)
T 2p91_A           99 SLDIIVHSIAY  109 (285)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.91  E-value=0.0028  Score=51.63  Aligned_cols=74  Identities=19%  Similarity=0.317  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC-hhhHHHH----HHcCCCE-EEcCCCccccc----------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS-TAKLDLL----RSLGADL-AIDYTKENIED----------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~-~~~~~~~----~~~g~~~-v~~~~~~~~~~----------~~~  213 (255)
                      .+++++|+||+|++|...++.+.. .|++|++++++ +++.+.+    ++.+... ++..+-.+..+          ..+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLAS-MGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            578999999999999998887777 49999999984 4443333    3344332 23222222111          124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus       107 ~id~li~nAg~  117 (271)
T 4iin_A          107 GLSYLVNNAGV  117 (271)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999994

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.91  E-value=0.0035  Score=49.97  Aligned_cols=73  Identities=18%  Similarity=0.278  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCC-------cEEEEecChhhHHHHH-Hc---CCCE-EE--cCCCcc-ccc-----
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGA-------SKVAATSSTAKLDLLR-SL---GADL-AI--DYTKEN-IED-----  210 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~-------~vi~~~~~~~~~~~~~-~~---g~~~-v~--~~~~~~-~~~-----  210 (255)
                      +++++|+||+|++|...+..+... |.       +|+++++++++.+.+. ++   +... .+  |-.+.. +..     
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~-G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARA-ARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHH-TTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHh-cCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence            568999999999999988877764 87       8999999887766543 22   4221 22  222211 111     


Q ss_pred             --cCCCccEEEECCCC
Q 025278          211 --LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 --~~~~~d~vid~~G~  224 (255)
                        ..+++|++|+++|.
T Consensus        81 ~~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHHTSCCSEEEECCCC
T ss_pred             HHhCCCCCEEEEcCCc
Confidence              12479999999984

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.91  E-value=0.0046  Score=50.60  Aligned_cols=76  Identities=13%  Similarity=0.164  Sum_probs=50.7

Q ss_pred             CCCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecCh--hhHHHHH-HcCCCEEEcCCCccccc----------cCC
Q 025278          149 SAGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSST--AKLDLLR-SLGADLAIDYTKENIED----------LPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~--~~~~~~~-~~g~~~v~~~~~~~~~~----------~~~  213 (255)
                      -.+++++|+||+  +++|...++.+.. .|++|++++++.  ++++.+. +.+....+..+-.+..+          ..+
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHR-EGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWD  102 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHH-TTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHH-cCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcC
Confidence            457899999988  6699998877777 499999999877  5555553 34433333322222111          124


Q ss_pred             CccEEEECCCCc
Q 025278          214 KFDVVFDAVGKM  225 (255)
Q Consensus       214 ~~d~vid~~G~~  225 (255)
                      .+|++|+++|..
T Consensus       103 ~id~li~nAg~~  114 (280)
T 3nrc_A          103 GLDAIVHSIAFA  114 (280)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CCCEEEECCccC
Confidence            789999999843

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.91  E-value=0.0039  Score=49.21  Aligned_cols=100  Identities=14%  Similarity=0.006  Sum_probs=67.2

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC---C-EEEcCCCccccccCCCccE
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA---D-LAIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~---~-~v~~~~~~~~~~~~~~~d~  217 (255)
                      .++...+.++++||-+| +|. |..+..+++.  +.++++++.+++..+.+++.-.   . .++..+........+.+|+
T Consensus        62 ~~~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  137 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIG-TGI-GYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR  137 (231)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHhcCCCCCCEEEEEc-CCC-CHHHHHHHHH--cCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccE
Confidence            34556778999999999 665 8888888886  4899999999999888865321   1 2232222211111347999


Q ss_pred             EEECCCCccceeeeeeccccCCceEEEEe
Q 025278          218 VFDAVGKMCISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       218 vid~~G~~~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      |+....-......+.+.++ ++|++++.-
T Consensus       138 v~~~~~~~~~~~~~~~~L~-pgG~l~~~~  165 (231)
T 1vbf_A          138 VVVWATAPTLLCKPYEQLK-EGGIMILPI  165 (231)
T ss_dssp             EEESSBBSSCCHHHHHTEE-EEEEEEEEE
T ss_pred             EEECCcHHHHHHHHHHHcC-CCcEEEEEE
Confidence            9977665554455566676 788887764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.91  E-value=0.0045  Score=52.06  Aligned_cols=74  Identities=18%  Similarity=0.214  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh----hHHHHHHc------CCCEEEcCCCc---cccccCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA----KLDLLRSL------GADLAIDYTKE---NIEDLPEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~----~~~~~~~~------g~~~v~~~~~~---~~~~~~~~~d  216 (255)
                      .+++|||+||+|.+|...+..+... |.+|++++++..    +.+.++..      .--.++..+-.   .+.+..+++|
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  102 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKL-NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD  102 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence            4679999999999999999888874 899999998543    33333332      21122322222   2333456899


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      +||.++|.
T Consensus       103 ~Vih~A~~  110 (351)
T 3ruf_A          103 HVLHQAAL  110 (351)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999984

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.91  E-value=0.0002  Score=57.22  Aligned_cols=98  Identities=16%  Similarity=0.155  Sum_probs=62.1

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCCccc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~~~~  227 (255)
                      -++|||+||+|.+|...++.+... | .+|+++++++++.+.+...+...+ .|..+. .+.+..+++|+||.+.|....
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~-G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~  101 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADK-QTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDL  101 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC-TTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTH
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhC-CCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCch
Confidence            358999999999999999888874 7 899999998877543322232221 222221 223334689999999886543


Q ss_pred             eee---eeecc-ccCCceEEEEeecc
Q 025278          228 SIV---YQKCD-KFQEKSLINFGLFR  249 (255)
Q Consensus       228 ~~~---~~~~~-~~~~G~~v~~G~~~  249 (255)
                      ...   ++..+ +...++++.++...
T Consensus       102 ~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A          102 DIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             hHHHHHHHHHHHHcCCCEEEEEecce
Confidence            222   22222 21237899888754

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.90  E-value=0.005  Score=48.44  Aligned_cols=96  Identities=13%  Similarity=0.036  Sum_probs=63.5

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCC------C-EEEcCCCccccccCCC
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGA------D-LAIDYTKENIEDLPEK  214 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~------~-~v~~~~~~~~~~~~~~  214 (255)
                      .++++++||-+| +|. |..+..+++..+ ..++++++.+++.++.+++    .+.      . .++..+..........
T Consensus        74 ~~~~~~~vLDiG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  151 (226)
T 1i1n_A           74 QLHEGAKALDVG-SGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAP  151 (226)
T ss_dssp             TSCTTCEEEEET-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCC
T ss_pred             hCCCCCEEEEEc-CCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCC
Confidence            478899999999 664 888888888752 2689999999998887753    221      1 2222221111111246


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      +|+|+...........+.+.++ ++|++++.
T Consensus       152 fD~i~~~~~~~~~~~~~~~~Lk-pgG~lv~~  181 (226)
T 1i1n_A          152 YDAIHVGAAAPVVPQALIDQLK-PGGRLILP  181 (226)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEE-EEEEEEEE
T ss_pred             cCEEEECCchHHHHHHHHHhcC-CCcEEEEE
Confidence            9999977666555566677777 78887764

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.90  E-value=0.0033  Score=52.65  Aligned_cols=74  Identities=26%  Similarity=0.362  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec---------ChhhHHHH----HHcCCCEEEcCCCcc-ccc-----
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS---------STAKLDLL----RSLGADLAIDYTKEN-IED-----  210 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~---------~~~~~~~~----~~~g~~~v~~~~~~~-~~~-----  210 (255)
                      .|++++|+||+|++|...++.+.. .|++|++.++         +.++.+.+    ++.+...+.|..+.. ...     
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~-~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~   86 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAE-RGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA   86 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence            578999999999999998888877 4999998754         44544332    334544445554432 111     


Q ss_pred             --cCCCccEEEECCCC
Q 025278          211 --LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 --~~~~~d~vid~~G~  224 (255)
                        ..+++|++|++.|.
T Consensus        87 ~~~~g~iD~lVnnAG~  102 (319)
T 1gz6_A           87 LDTFGRIDVVVNNAGI  102 (319)
T ss_dssp             HHHTSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence              13479999999983

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.90  E-value=0.0061  Score=49.91  Aligned_cols=94  Identities=21%  Similarity=0.252  Sum_probs=58.8

Q ss_pred             cchhHHHHHHHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc
Q 025278          132 LPLATETAYEGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED  210 (255)
Q Consensus       132 l~~~~~ta~~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  210 (255)
                      +||+...+...++...+ -.|++++|.|+++.+|..+++++... +++|.+..+...                   +..+
T Consensus       141 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~hs~t~-------------------~L~~  200 (285)
T 3l07_A          141 ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA-KATVTTCHRFTT-------------------DLKS  200 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCS-------------------SHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCch-------------------hHHH
Confidence            45554445555554443 47899999996666899999999985 998877755322                   2223


Q ss_pred             cCCCccEEEECCCCccceeeeeeccccCCceEEEEeec
Q 025278          211 LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       211 ~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ..+.+|+||.++|.+..  .-..+.+ ++..++-+|..
T Consensus       201 ~~~~ADIVI~Avg~p~~--I~~~~vk-~GavVIDvgi~  235 (285)
T 3l07_A          201 HTTKADILIVAVGKPNF--ITADMVK-EGAVVIDVGIN  235 (285)
T ss_dssp             HHTTCSEEEECCCCTTC--BCGGGSC-TTCEEEECCCE
T ss_pred             hcccCCEEEECCCCCCC--CCHHHcC-CCcEEEEeccc
Confidence            33466777777775543  1234444 45555666654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.89  E-value=0.0074  Score=43.42  Aligned_cols=74  Identities=24%  Similarity=0.231  Sum_probs=52.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEE-cCCCcc-ccc-cCCCccEEEECCCCcc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAI-DYTKEN-IED-LPEKFDVVFDAVGKMC  226 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~-~~~~~~-~~~-~~~~~d~vid~~G~~~  226 (255)
                      +.+|+|+| +|.+|...++.+... |.+++++++++++.+.++ +++...+. +..+.. +.+ ..+++|+||-+++...
T Consensus         4 ~m~i~IiG-~G~iG~~~a~~L~~~-g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~   81 (140)
T 1lss_A            4 GMYIIIAG-IGRVGYTLAKSLSEK-GHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE   81 (140)
T ss_dssp             -CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch
Confidence            46899999 799999998888874 899999999998887775 45654332 222221 111 1457999999998654

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.89  E-value=0.001  Score=54.33  Aligned_cols=97  Identities=20%  Similarity=0.183  Sum_probs=62.2

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCCcc-
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVF--GASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGKMC-  226 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~--g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~~~-  226 (255)
                      ++|+|+||+|.+|...++.+.. .  |.+|+++++++++.+.+...+...+ .|..+. .+.+..+++|+||.+++... 
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~-~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~   79 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLK-KVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYD   79 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTT-TSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCSC
T ss_pred             CeEEEEcCCchHHHHHHHHHHH-hCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCcC
Confidence            3699999999999998888776 4  7899999998877665555555433 232222 23344568999999988421 


Q ss_pred             ------ceeeeeeccccC-CceEEEEeecc
Q 025278          227 ------ISIVYQKCDKFQ-EKSLINFGLFR  249 (255)
Q Consensus       227 ------~~~~~~~~~~~~-~G~~v~~G~~~  249 (255)
                            .....++.++.. -++++.++...
T Consensus        80 ~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           80 NTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             chHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence                  111112222212 25888888654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.89  E-value=0.0012  Score=55.19  Aligned_cols=72  Identities=19%  Similarity=0.233  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecC---hhhHHHH-HHc----CCC-EEEcCCC-ccccccCCCccEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSS---TAKLDLL-RSL----GAD-LAIDYTK-ENIEDLPEKFDVV  218 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~---~~~~~~~-~~~----g~~-~v~~~~~-~~~~~~~~~~d~v  218 (255)
                      .+++++|+| +|++|.+++..+... |+ +++++.|+   .+|.+.+ +++    +.. .+++..+ +++.+....+|+|
T Consensus       153 ~gk~~lVlG-aGG~g~aia~~L~~~-Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI  230 (315)
T 3tnl_A          153 IGKKMTICG-AGGAATAICIQAALD-GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF  230 (315)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             cCCEEEEEC-CChHHHHHHHHHHHC-CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence            688999999 699999988888875 77 78888998   6665543 232    321 2333332 1222223478999


Q ss_pred             EECCC
Q 025278          219 FDAVG  223 (255)
Q Consensus       219 id~~G  223 (255)
                      |+|++
T Consensus       231 INaTp  235 (315)
T 3tnl_A          231 TNATG  235 (315)
T ss_dssp             EECSS
T ss_pred             EECcc
Confidence            99987

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.89  E-value=0.0025  Score=51.40  Aligned_cols=74  Identities=23%  Similarity=0.373  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------~~  213 (255)
                      .+++++|+||+|++|...+..+... |++|+++++ ++++.+.+    ++.+... .+  |..+.. ..+.       .+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATE-KAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999988887774 999999998 76665443    2234322 22  222211 1111       13


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        85 ~id~li~~Ag~   95 (261)
T 1gee_A           85 KLDVMINNAGL   95 (261)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999999984

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.88  E-value=0.0046  Score=50.88  Aligned_cols=69  Identities=26%  Similarity=0.375  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHH-HHcCC---CEEEcCCCccccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLL-RSLGA---DLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~-~~~g~---~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      .+++++|+| +|++|.+++..+... |+ +++++.|+.+|.+.+ ++++.   ..+..     +.+...++|+||+|++.
T Consensus       125 ~~k~vlvlG-aGg~g~aia~~L~~~-G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~-----~~~l~~~aDiIInaTp~  197 (281)
T 3o8q_A          125 KGATILLIG-AGGAARGVLKPLLDQ-QPASITVTNRTFAKAEQLAELVAAYGEVKAQA-----FEQLKQSYDVIINSTSA  197 (281)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTT-CCSEEEEEESSHHHHHHHHHHHGGGSCEEEEE-----GGGCCSCEEEEEECSCC
T ss_pred             cCCEEEEEC-chHHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhccCCeeEee-----HHHhcCCCCEEEEcCcC
Confidence            678999999 799999988888775 75 888999999886654 44542   12222     22223689999999874


Q ss_pred             c
Q 025278          225 M  225 (255)
Q Consensus       225 ~  225 (255)
                      .
T Consensus       198 g  198 (281)
T 3o8q_A          198 S  198 (281)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.88  E-value=0.0075  Score=48.38  Aligned_cols=102  Identities=18%  Similarity=0.051  Sum_probs=68.7

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPE  213 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~  213 (255)
                      .+....++++++||-.| +|. |..+..+++.++ +.++++++.+++..+.+++    .|..   .++..+-.+. -..+
T Consensus        85 i~~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~  161 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAG-VGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEE  161 (255)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCC
T ss_pred             HHHhhCCCCCCEEEEec-CCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCC
Confidence            34567788999999999 665 888888888743 6899999999998887754    3532   2222221111 1123


Q ss_pred             CccEEEECCCCcc-ceeeeeeccccCCceEEEEee
Q 025278          214 KFDVVFDAVGKMC-ISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       214 ~~d~vid~~G~~~-~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      .+|+|+-...... ....+.+.++ ++|+++++..
T Consensus       162 ~~D~v~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~  195 (255)
T 3mb5_A          162 NVDHVILDLPQPERVVEHAAKALK-PGGFFVAYTP  195 (255)
T ss_dssp             SEEEEEECSSCGGGGHHHHHHHEE-EEEEEEEEES
T ss_pred             CcCEEEECCCCHHHHHHHHHHHcC-CCCEEEEEEC
Confidence            6999998766443 4444566676 7899988753

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.88  E-value=0.0034  Score=51.74  Aligned_cols=74  Identities=27%  Similarity=0.429  Sum_probs=51.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-------hhHHHHH---HcCCCEE-EcCCCc-cccccCCCccEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-------AKLDLLR---SLGADLA-IDYTKE-NIEDLPEKFDVV  218 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-------~~~~~~~---~~g~~~v-~~~~~~-~~~~~~~~~d~v  218 (255)
                      +++|+|+||+|.+|...+..+... |.+|+++++++       ++.+.++   ..|...+ .|..+. .+.+..+++|+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v   80 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhC-CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEE
Confidence            467999999999999998888774 89999999876       5554433   3455432 233222 233334689999


Q ss_pred             EECCCCc
Q 025278          219 FDAVGKM  225 (255)
Q Consensus       219 id~~G~~  225 (255)
                      |.++|..
T Consensus        81 i~~a~~~   87 (307)
T 2gas_A           81 ICAAGRL   87 (307)
T ss_dssp             EECSSSS
T ss_pred             EECCccc
Confidence            9999853

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.87  E-value=0.0034  Score=51.07  Aligned_cols=75  Identities=19%  Similarity=0.276  Sum_probs=47.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-cChhhHHHH----HHcCCCEE-E--cCCCcc-cccc-------C
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLL----RSLGADLA-I--DYTKEN-IEDL-------P  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~~~~~~~~~----~~~g~~~v-~--~~~~~~-~~~~-------~  212 (255)
                      ..++++||+||++++|.+.++.+... |++|++.+ +++++.+.+    ++.+.... +  |-.+.. ..+.       .
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~-G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASD-GFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHH-TCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999988777774 99999874 455544433    33443322 2  222221 1111       2


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus       104 g~iD~lvnnAG~  115 (267)
T 3u5t_A          104 GGVDVLVNNAGI  115 (267)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999984

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=96.87  E-value=0.0032  Score=54.65  Aligned_cols=79  Identities=19%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             hccc-CCCCEEEEEcCCchHHHHHHHHHHH-hcCCcEEEEecChhhH----------------HHHHHcCCCE-EE--cC
Q 025278          145 RSAF-SAGKSILVLGGAGGVGTMVIQLAKH-VFGASKVAATSSTAKL----------------DLLRSLGADL-AI--DY  203 (255)
Q Consensus       145 ~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~-~~g~~vi~~~~~~~~~----------------~~~~~~g~~~-v~--~~  203 (255)
                      +..+ +.++++||+||++++|++.+..+.. . |++|++++++.++.                +.+++.|... .+  |-
T Consensus        54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~-GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dv  132 (422)
T 3s8m_A           54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGF-GADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDA  132 (422)
T ss_dssp             TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHH-CCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             ccccccCCCEEEEECCChHHHHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecC
Confidence            3455 4688999999999999987766655 5 99999998764421                3445666443 23  22


Q ss_pred             CCccc--------cccC-CCccEEEECCCC
Q 025278          204 TKENI--------EDLP-EKFDVVFDAVGK  224 (255)
Q Consensus       204 ~~~~~--------~~~~-~~~d~vid~~G~  224 (255)
                      .+...        .+.. +++|+++++.|.
T Consensus       133 td~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          133 FSDAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             TSHHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            22211        1123 679999999885

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.86  E-value=0.0018  Score=55.41  Aligned_cols=91  Identities=23%  Similarity=0.181  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      -.|++|.|+| .|.+|...++.++.+ |.+ |++.+++..+.+.++++|+..+     .+..+.....|+|+.++.....
T Consensus       162 l~g~tvgIIG-~G~IG~~vA~~l~~~-G~~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~~aDvV~l~~P~t~~  234 (364)
T 2j6i_A          162 IEGKTIATIG-AGRIGYRVLERLVPF-NPKELLYYDYQALPKDAEEKVGARRV-----ENIEELVAQADIVTVNAPLHAG  234 (364)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHGGG-CCSEEEEECSSCCCHHHHHHTTEEEC-----SSHHHHHHTCSEEEECCCCSTT
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHhC-CCcEEEEECCCccchhHHHhcCcEec-----CCHHHHHhcCCEEEECCCCChH
Confidence            3678999999 999999999999985 997 9999988777777777875421     1233344578999999885422


Q ss_pred             eee-----eeeccccCCceEEEEee
Q 025278          228 SIV-----YQKCDKFQEKSLINFGL  247 (255)
Q Consensus       228 ~~~-----~~~~~~~~~G~~v~~G~  247 (255)
                      ...     .+..++ +++.++.++.
T Consensus       235 t~~li~~~~l~~mk-~ga~lIn~ar  258 (364)
T 2j6i_A          235 TKGLINKELLSKFK-KGAWLVNTAR  258 (364)
T ss_dssp             TTTCBCHHHHTTSC-TTEEEEECSC
T ss_pred             HHHHhCHHHHhhCC-CCCEEEECCC
Confidence            111     234444 5667777765

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.86  E-value=0.003  Score=51.90  Aligned_cols=74  Identities=16%  Similarity=0.191  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-hhHHHH-H----HcCCCE-E--EcCCC----cc-cccc----
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLDLL-R----SLGADL-A--IDYTK----EN-IEDL----  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-~~~~~~-~----~~g~~~-v--~~~~~----~~-~~~~----  211 (255)
                      .+++++|+||+|++|.+.++.+... |++|+++++++ ++.+.+ +    +.+... .  .|-.+    .. ....    
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~-G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQT-GYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHH-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            5789999999999999988887774 99999999987 665433 2    334322 2  23222    11 1111    


Q ss_pred             ---CCCccEEEECCCC
Q 025278          212 ---PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ---~~~~d~vid~~G~  224 (255)
                         .+++|++|+++|.
T Consensus       101 ~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A          101 FRAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence               2379999999984

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.85  E-value=0.0038  Score=51.43  Aligned_cols=42  Identities=21%  Similarity=0.156  Sum_probs=35.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-cChhhHHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLL  192 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~~~~~~~~~  192 (255)
                      .+++++|+||++++|.+.++.+.. .|++|++++ +++++.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHA-EGYAVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCeEEEEcCCCHHHHHHH
Confidence            578999999999999998888877 499999999 988776544

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.0026  Score=51.34  Aligned_cols=74  Identities=24%  Similarity=0.374  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHH-HcCCCEE-E--cCCCcc-ccc-------cCCCccE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLR-SLGADLA-I--DYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~-~~g~~~v-~--~~~~~~-~~~-------~~~~~d~  217 (255)
                      |++++|+||++++|...++.+...+ +.+|+.+++++++++.+. +++.... +  |-.+.. ..+       ..+.+|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            5789999999999999876655533 478888899988877654 4453322 2  322221 111       1247999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|++.|.
T Consensus        82 lvnnAg~   88 (254)
T 3kzv_A           82 LVANAGV   88 (254)
T ss_dssp             EEEECCC
T ss_pred             EEECCcc
Confidence            9999984

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.84  E-value=0.0035  Score=52.40  Aligned_cols=36  Identities=28%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      -.|+++||+||++++|...++.+... |++|++++++
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~-G~~Vv~~~~~   79 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQD-GADIVAIDLC   79 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-CCeEEEEecc
Confidence            46789999999999999988887774 9999999875

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.84  E-value=0.0029  Score=50.84  Aligned_cols=70  Identities=19%  Similarity=0.293  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCcc-ccc-------cCCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKEN-IED-------LPEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~-~~~-------~~~~~d~vid  220 (255)
                      .+++++|+||+|++|...+..+.. .|++|++++++++.    ++.+...+ .|..+.. ..+       ..+++|++|+
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~   80 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVE-AGAKVTGFDQAFTQ----EQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN   80 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCCCS----SCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCchhh----hcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            478999999999999998888877 49999999987653    22342211 2322221 111       1247999999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      +.|.
T Consensus        81 ~Ag~   84 (250)
T 2fwm_X           81 AAGI   84 (250)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9984

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.84  E-value=0.0013  Score=53.61  Aligned_cols=96  Identities=18%  Similarity=0.177  Sum_probs=59.9

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhc--CCcEEEEecChhhHHHHHHcCCCEE-EcCCC-ccccccCCCccEEEECCCCcc--
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVF--GASKVAATSSTAKLDLLRSLGADLA-IDYTK-ENIEDLPEKFDVVFDAVGKMC--  226 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~--g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~-~~~~~~~~~~d~vid~~G~~~--  226 (255)
                      +|+|+||+|.+|...++.+.. .  |.+|+++++++++.+.+...+...+ .|..+ +.+.+..+++|+||.++|...  
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~   79 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMK-TVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQ   79 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTT-TSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC------
T ss_pred             CEEEEcCCchHHHHHHHHHHh-hCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchH
Confidence            489999999999998888776 4  7899999998877665555555432 23322 223344568999999988421  


Q ss_pred             ---ceeeeeeccc-cCCceEEEEeecc
Q 025278          227 ---ISIVYQKCDK-FQEKSLINFGLFR  249 (255)
Q Consensus       227 ---~~~~~~~~~~-~~~G~~v~~G~~~  249 (255)
                         .....++.++ ..-++++.++...
T Consensus        80 ~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           80 RAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             --CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence               1111222222 1125888887754

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.83  E-value=0.0014  Score=54.95  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=48.6

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      .+|||+||+|.+|...++.+... |.+|+++++++++.+.+...+...+ .|..+. .+.+..+++|+||.++|.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAA-GHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            58999999999999999888874 8999999998766544333344332 222221 233345689999999984

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.83  E-value=0.002  Score=54.80  Aligned_cols=91  Identities=21%  Similarity=0.237  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc-cc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM-CI  227 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~-~~  227 (255)
                      -.|++|.|+| .|.+|...++.++.+ |.+|++.+++..+.+.+++.|+..+     .++.+..+..|+|+-++... .+
T Consensus       162 l~gktvGIIG-~G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell~~aDvV~l~~Plt~~t  234 (351)
T 3jtm_A          162 LEGKTIGTVG-AGRIGKLLLQRLKPF-GCNLLYHDRLQMAPELEKETGAKFV-----EDLNEMLPKCDVIVINMPLTEKT  234 (351)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHGGG-CCEEEEECSSCCCHHHHHHHCCEEC-----SCHHHHGGGCSEEEECSCCCTTT
T ss_pred             ccCCEEeEEE-eCHHHHHHHHHHHHC-CCEEEEeCCCccCHHHHHhCCCeEc-----CCHHHHHhcCCEEEECCCCCHHH
Confidence            3588999999 999999999999985 9999999998777777777786432     23344455789999888733 22


Q ss_pred             ee----eeeeccccCCceEEEEee
Q 025278          228 SI----VYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       228 ~~----~~~~~~~~~~G~~v~~G~  247 (255)
                      ..    ..+..++ ++..++.++.
T Consensus       235 ~~li~~~~l~~mk-~gailIN~aR  257 (351)
T 3jtm_A          235 RGMFNKELIGKLK-KGVLIVNNAR  257 (351)
T ss_dssp             TTCBSHHHHHHSC-TTEEEEECSC
T ss_pred             HHhhcHHHHhcCC-CCCEEEECcC
Confidence            11    1233344 5666766654

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.83  E-value=0.0027  Score=52.27  Aligned_cols=73  Identities=23%  Similarity=0.202  Sum_probs=51.1

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHH--HHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLD--LLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~--~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      .++|+|+||+|.+|...++.+... | .+|+++++++++.+  .+...+...+ .|..+. .+.+..+++|+||.++|.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   82 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLED-GTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNY   82 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-CSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhc-CCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCCC
Confidence            478999999999999988887774 6 89999999876642  3344455433 232221 233334689999999873

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.83  E-value=0.0029  Score=52.96  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=31.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      -.|+++||+||++++|.+.+..+... |++|++++++
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~-G~~Vv~~~r~   60 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAE-GARVVVNDIG   60 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCc
Confidence            46789999999999999988877774 9999999876

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.82  E-value=0.00085  Score=52.91  Aligned_cols=71  Identities=18%  Similarity=0.208  Sum_probs=49.0

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc---ccccCCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN---IEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~~d~vid~~G~~  225 (255)
                      ++|+|+||+|.+|...++.+... |.+|+++++++++.+.+. .+. .++..+-.+   +.+..+++|+||.++|..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~-~~~-~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNR-GFEVTAVVRHPEKIKIEN-EHL-KVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTT-TCEEEEECSCGGGCCCCC-TTE-EEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHC-CCEEEEEEcCcccchhcc-Cce-EEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            58999999999999999888884 899999999887653221 111 222222111   223345899999999854

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.82  E-value=0.0028  Score=53.47  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccce
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~  228 (255)
                      -.|++|.|+| .|.+|...++.++.. |.+|++.+++.++ +.++++|++..      ++.+.....|+|+.++......
T Consensus       163 l~g~tvgIIG-lG~IG~~vA~~l~~~-G~~V~~~d~~~~~-~~~~~~g~~~~------~l~ell~~aDvV~l~~P~t~~t  233 (335)
T 2g76_A          163 LNGKTLGILG-LGRIGREVATRMQSF-GMKTIGYDPIISP-EVSASFGVQQL------PLEEIWPLCDFITVHTPLLPST  233 (335)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECSSSCH-HHHHHTTCEEC------CHHHHGGGCSEEEECCCCCTTT
T ss_pred             CCcCEEEEEe-ECHHHHHHHHHHHHC-CCEEEEECCCcch-hhhhhcCceeC------CHHHHHhcCCEEEEecCCCHHH
Confidence            3578999999 999999999999985 9999999987766 35677786431      3334455789999998854322


Q ss_pred             e-----eeeeccccCCceEEEEee
Q 025278          229 I-----VYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       229 ~-----~~~~~~~~~~G~~v~~G~  247 (255)
                      .     ..+..++ +++.++.+|.
T Consensus       234 ~~li~~~~l~~mk-~gailIN~ar  256 (335)
T 2g76_A          234 TGLLNDNTFAQCK-KGVRVVNCAR  256 (335)
T ss_dssp             TTSBCHHHHTTSC-TTEEEEECSC
T ss_pred             HHhhCHHHHhhCC-CCcEEEECCC
Confidence            1     1234444 5677777775

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.82  E-value=0.005  Score=49.78  Aligned_cols=75  Identities=21%  Similarity=0.307  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHHH----HHcCCC-EEE--cCCCcc-cccc-------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLL----RSLGAD-LAI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~----~~~g~~-~v~--~~~~~~-~~~~-------~~  213 (255)
                      .+++++|+||++++|.+.++.+... |++|+++ .+++++.+.+    ++.+.. ..+  |-.+.. ....       .+
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQE-GANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999988887774 9999988 5555544433    333432 222  222211 1111       24


Q ss_pred             CccEEEECCCCc
Q 025278          214 KFDVVFDAVGKM  225 (255)
Q Consensus       214 ~~d~vid~~G~~  225 (255)
                      ++|++|+++|..
T Consensus        86 ~id~lv~nAg~~   97 (259)
T 3edm_A           86 EIHGLVHVAGGL   97 (259)
T ss_dssp             SEEEEEECCCCC
T ss_pred             CCCEEEECCCcc
Confidence            799999999843

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.82  E-value=0.0022  Score=51.79  Aligned_cols=68  Identities=24%  Similarity=0.349  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE--cCCCcc-cc-------ccCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI--DYTKEN-IE-------DLPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~--~~~~~~-~~-------~~~~~~d~vi  219 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.     . ..+  |..+.+ ..       +..+.+|++|
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~-----~-~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv   92 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFAD-AGDKVAITYRSGEPPEG-----F-LAVKCDITDTEQVEQAYKEIEETHGPVEVLI   92 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSSCCCTT-----S-EEEECCTTSHHHHHHHHHHHHHHTCSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCChHhhcc-----c-eEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            478999999999999998888777 49999999988765432     1 222  322221 11       1124689999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      +++|.
T Consensus        93 ~nAg~   97 (253)
T 2nm0_A           93 ANAGV   97 (253)
T ss_dssp             EECSC
T ss_pred             ECCCC
Confidence            99884

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.80  E-value=0.0035  Score=50.86  Aligned_cols=74  Identities=23%  Similarity=0.337  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh---hHHHH----HHcCCCEE-E--cCCCcc-ccc-------c
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA---KLDLL----RSLGADLA-I--DYTKEN-IED-------L  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~---~~~~~----~~~g~~~v-~--~~~~~~-~~~-------~  211 (255)
                      .++++||+||++++|.+.+..+.. .|++|++++++..   +.+.+    ++.|.... +  |-.+.. ..+       .
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFAL-ESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTT-SSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            578999999999999998888877 4999999876543   33322    22343322 2  222221 111       1


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+++|++|+++|.
T Consensus        89 ~g~iD~lvnnAg~  101 (262)
T 3ksu_A           89 FGKVDIAINTVGK  101 (262)
T ss_dssp             HCSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2479999999993

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.79  E-value=0.0042  Score=49.92  Aligned_cols=74  Identities=16%  Similarity=0.241  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecCh--hhHHHHHHc--CCC-EE--EcCCCc-c-cccc-------C
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSST--AKLDLLRSL--GAD-LA--IDYTKE-N-IEDL-------P  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~--~~~~~~~~~--g~~-~v--~~~~~~-~-~~~~-------~  212 (255)
                      .+++++|+||+|++|...++.+... |++ |+++++++  +..+.+++.  +.. ..  .|-.+. . ..+.       .
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~-G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKR-NLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-CCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            4689999999999999988888774 887 88888875  334444332  222 12  233322 1 1111       1


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus        83 g~id~lv~~Ag~   94 (254)
T 1sby_A           83 KTVDILINGAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            379999999984

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.78  E-value=0.0041  Score=52.28  Aligned_cols=42  Identities=21%  Similarity=0.156  Sum_probs=36.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-cChhhHHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLL  192 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~~~~~~~~~  192 (255)
                      .++++||+||+|++|.+.++.+.. .|++|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~-~G~~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHA-EGYAVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHH
Confidence            578999999999999998888877 499999999 888776654

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.78  E-value=0.0024  Score=50.90  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=49.0

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHHH----HHcCCC-EE-E--cCCCcc-cccc-------CC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLL----RSLGAD-LA-I--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~----~~~g~~-~v-~--~~~~~~-~~~~-------~~  213 (255)
                      +++++|+||+|++|...++.+.. .|.+|+++ ++++++.+.+    ++.+.. .. +  |..+.. ..+.       .+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~-~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAE-DGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999998888877 49999988 7887766543    223432 22 2  322221 1111       24


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        80 ~~d~li~~Ag~   90 (245)
T 2ph3_A           80 GLDTLVNNAGI   90 (245)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.77  E-value=0.0011  Score=52.60  Aligned_cols=98  Identities=19%  Similarity=0.206  Sum_probs=64.3

Q ss_pred             hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccc-ccc--CCC
Q 025278          145 RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENI-EDL--PEK  214 (255)
Q Consensus       145 ~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~-~~~--~~~  214 (255)
                      .....++++||-+| +| .|..+..+++...+.++++++.+++.++.+++    .|..   .++..+.... ...  .+.
T Consensus        49 ~~~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  126 (233)
T 2gpy_A           49 LLKMAAPARILEIG-TA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPL  126 (233)
T ss_dssp             HHHHHCCSEEEEEC-CT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCC
T ss_pred             HHhccCCCEEEEec-CC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCC
Confidence            34456788999999 66 68888999988557899999999998887754    3432   2232222221 112  357


Q ss_pred             ccEEEECCCCc---cceeeeeeccccCCceEEEE
Q 025278          215 FDVVFDAVGKM---CISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       215 ~d~vid~~G~~---~~~~~~~~~~~~~~G~~v~~  245 (255)
                      +|+||-.....   .....+.+.++ ++|++++.
T Consensus       127 fD~I~~~~~~~~~~~~l~~~~~~L~-pgG~lv~~  159 (233)
T 2gpy_A          127 FDVLFIDAAKGQYRRFFDMYSPMVR-PGGLILSD  159 (233)
T ss_dssp             EEEEEEEGGGSCHHHHHHHHGGGEE-EEEEEEEE
T ss_pred             ccEEEECCCHHHHHHHHHHHHHHcC-CCeEEEEE
Confidence            99999765532   22234456666 78988875

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.76  E-value=0.01  Score=48.57  Aligned_cols=95  Identities=21%  Similarity=0.188  Sum_probs=59.0

Q ss_pred             cchhHHHHHHHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc
Q 025278          132 LPLATETAYEGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED  210 (255)
Q Consensus       132 l~~~~~ta~~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  210 (255)
                      +|++...++..++...+ -.|++++|.|.++.+|..+++++... +++|.+..+....+                   .+
T Consensus       141 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~-gAtVtv~hs~T~~L-------------------~~  200 (286)
T 4a5o_A          141 RPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLG-GCTVTVTHRFTRDL-------------------AD  200 (286)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHT-TCEEEEECTTCSCH-------------------HH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCCcCH-------------------HH
Confidence            35554445555554443 47999999996667999999999985 99988876533222                   22


Q ss_pred             cCCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          211 LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       211 ~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ..+.+|+||.++|.+...  -..+.+ ++..++-+|...
T Consensus       201 ~~~~ADIVI~Avg~p~~I--~~~~vk-~GavVIDvgi~~  236 (286)
T 4a5o_A          201 HVSRADLVVVAAGKPGLV--KGEWIK-EGAIVIDVGINR  236 (286)
T ss_dssp             HHHTCSEEEECCCCTTCB--CGGGSC-TTCEEEECCSCS
T ss_pred             HhccCCEEEECCCCCCCC--CHHHcC-CCeEEEEecccc
Confidence            233567777777655421  233444 455556666543

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.76  E-value=0.0024  Score=52.96  Aligned_cols=70  Identities=24%  Similarity=0.338  Sum_probs=47.8

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCccccccCCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      ++|||+||+|.+|...++.+... |.+|+++++++.+.+ ++  +...+ .|...+.+.+..+++|+||.+++..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~   73 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKND-GNTPIILTRSIGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAATR   73 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCCC--------CCEEEECCCCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhC-CCEEEEEeCCCCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEccccC
Confidence            68999999999999999888884 899999999865554 33  33322 2222122333456999999998843

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.76  E-value=0.0038  Score=50.65  Aligned_cols=69  Identities=16%  Similarity=0.243  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE-EEcCCCcc-cccc-------CCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL-AIDYTKEN-IEDL-------PEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~-v~~~~~~~-~~~~-------~~~~d~vid  220 (255)
                      .++++||+||+|++|...+..+... |++|+++++++++     ...... ..|..+.. ....       .+++|++|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDE-GSKVIDLSIHDPG-----EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESSCCC-----SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEecCccc-----CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4789999999999999988888774 9999999987765     111211 12222211 1111       137999999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      ++|.
T Consensus        81 ~Ag~   84 (264)
T 2dtx_A           81 NAGI   84 (264)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.76  E-value=0.0032  Score=50.28  Aligned_cols=74  Identities=22%  Similarity=0.448  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------~~  213 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++ .+++++.+.+    ++.+... .+  |..+.. ..+.       .+
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~-~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGN-MGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG   82 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            468999999999999998888877 49999988 5665554433    2334332 22  222211 1111       13


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        83 ~~d~vi~~Ag~   93 (247)
T 2hq1_A           83 RIDILVNNAGI   93 (247)
T ss_dssp             CCCEEEECC--
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.75  E-value=0.0058  Score=49.83  Aligned_cols=75  Identities=20%  Similarity=0.339  Sum_probs=48.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC-hhhHHHH----HHcCCCEE-EcCCCcccc---cc-------C
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS-TAKLDLL----RSLGADLA-IDYTKENIE---DL-------P  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~-~~~~~~~----~~~g~~~v-~~~~~~~~~---~~-------~  212 (255)
                      -.|+++||+||++++|.+.++.+.. .|++|++++++ .++.+.+    ++.|.... +..+-.+..   +.       .
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLAL-EGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL  107 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            3678999999999999998887777 49999988654 4444432    33454322 222211111   11       2


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus       108 g~iD~lvnnAg~  119 (271)
T 3v2g_A          108 GGLDILVNSAGI  119 (271)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            379999999984

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.74  E-value=0.0084  Score=49.09  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=58.4

Q ss_pred             cchhHHHHHHHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc
Q 025278          132 LPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED  210 (255)
Q Consensus       132 l~~~~~ta~~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  210 (255)
                      +|++...+...++... --.|++++|.|+++.+|..+++++... +++|.+..+..+.+                   .+
T Consensus       140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~-gAtVtv~h~~t~~L-------------------~~  199 (285)
T 3p2o_A          140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNA-GATVSVCHIKTKDL-------------------SL  199 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCSCH-------------------HH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCchhH-------------------HH
Confidence            4555444555555443 348999999996666899999999985 99988876543322                   22


Q ss_pred             cCCCccEEEECCCCccceeeeeeccccCCceEEEEeec
Q 025278          211 LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       211 ~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      ..+.+|+||.++|.+..  .-..+.+ ++..++-+|..
T Consensus       200 ~~~~ADIVI~Avg~p~~--I~~~~vk-~GavVIDVgi~  234 (285)
T 3p2o_A          200 YTRQADLIIVAAGCVNL--LRSDMVK-EGVIVVDVGIN  234 (285)
T ss_dssp             HHTTCSEEEECSSCTTC--BCGGGSC-TTEEEEECCCE
T ss_pred             HhhcCCEEEECCCCCCc--CCHHHcC-CCeEEEEeccC
Confidence            33456777777775543  1233444 44455556554

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.73  E-value=0.011  Score=48.74  Aligned_cols=96  Identities=21%  Similarity=0.248  Sum_probs=62.5

Q ss_pred             ccchhHHHHHHHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc
Q 025278          131 SLPLATETAYEGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE  209 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  209 (255)
                      .+||+.......++...+ -.|++|+|+|++..+|..+++++... +++|.+..+..                   .+..
T Consensus       144 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~hs~t-------------------~~L~  203 (301)
T 1a4i_A          144 FIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWN-NATVTTCHSKT-------------------AHLD  203 (301)
T ss_dssp             CCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTC-------------------SSHH
T ss_pred             ccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhC-CCeEEEEECCc-------------------ccHH
Confidence            345554444445554443 47899999995557899999999985 89988876432                   2333


Q ss_pred             ccCCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          210 DLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       210 ~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +..+.+|+||-++|.+..  .-..+++ ++..++-+|...
T Consensus       204 ~~~~~ADIVI~Avg~p~~--I~~~~vk-~GavVIDVgi~~  240 (301)
T 1a4i_A          204 EEVNKGDILVVATGQPEM--VKGEWIK-PGAIVIDCGINY  240 (301)
T ss_dssp             HHHTTCSEEEECCCCTTC--BCGGGSC-TTCEEEECCCBC
T ss_pred             HHhccCCEEEECCCCccc--CCHHHcC-CCcEEEEccCCC
Confidence            334567888888887653  2344455 566777777653

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.73  E-value=0.0032  Score=51.08  Aligned_cols=74  Identities=31%  Similarity=0.374  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------~~  213 (255)
                      .+++++|+||+|++|...+..+.. .|++|+++++ ++++.+.+    ++.+... .+  |..+.+ +.+.       ..
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   98 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGR-RGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   98 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999998888877 4999999988 66665433    3335432 22  322221 1111       13


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|++.|.
T Consensus        99 ~~d~vi~~Ag~  109 (274)
T 1ja9_A           99 GLDFVMSNSGM  109 (274)
T ss_dssp             CEEEEECCCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.72  E-value=0.0036  Score=53.99  Aligned_cols=90  Identities=14%  Similarity=0.028  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++.++.+.++++|+...     .++.+.....|+|+.++.......
T Consensus       190 ~gktvGIIG-lG~IG~~vA~~l~a~-G~~V~~~d~~~~~~~~~~~~G~~~~-----~~l~ell~~aDvV~l~~Plt~~t~  262 (393)
T 2nac_A          190 EAMHVGTVA-AGRIGLAVLRRLAPF-DVHLHYTDRHRLPESVEKELNLTWH-----ATREDMYPVCDVVTLNCPLHPETE  262 (393)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGG-TCEEEEECSSCCCHHHHHHHTCEEC-----SSHHHHGGGCSEEEECSCCCTTTT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhC-CCEEEEEcCCccchhhHhhcCceec-----CCHHHHHhcCCEEEEecCCchHHH
Confidence            578999999 999999999999985 9999999988777677777786432     123344457899999887432211


Q ss_pred             -----eeeeccccCCceEEEEee
Q 025278          230 -----VYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       230 -----~~~~~~~~~~G~~v~~G~  247 (255)
                           ..+..++ ++..++.++.
T Consensus       263 ~li~~~~l~~mk-~gailIN~aR  284 (393)
T 2nac_A          263 HMINDETLKLFK-RGAYIVNTAR  284 (393)
T ss_dssp             TCBSHHHHTTSC-TTEEEEECSC
T ss_pred             HHhhHHHHhhCC-CCCEEEECCC
Confidence                 1223444 4566676664

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.71  E-value=0.0038  Score=50.79  Aligned_cols=76  Identities=25%  Similarity=0.367  Sum_probs=49.5

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------  211 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------  211 (255)
                      ...+++++|+||+|++|...++.+.. .|++|+++ .+++++.+.+    ++.+... .+  |..+.. ....       
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAAR-QGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ  101 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            34678999999999999998888877 49999877 6676665543    2334322 22  222211 1111       


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+++|++|+++|.
T Consensus       102 ~g~id~li~nAg~  114 (272)
T 4e3z_A          102 FGRLDGLVNNAGI  114 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence            2478999999984

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.70  E-value=0.0043  Score=50.49  Aligned_cols=75  Identities=29%  Similarity=0.405  Sum_probs=48.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH----HHcCCCEE-E--cCCCcc-cccc-------C
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL----RSLGADLA-I--DYTKEN-IEDL-------P  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~----~~~g~~~v-~--~~~~~~-~~~~-------~  212 (255)
                      -.|+++||+||++++|.+.++.+... |++|+++++ +.++.+.+    ++.|.... +  |-.+.. ..+.       .
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   94 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRL-GAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF   94 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999988887774 999998775 44444332    34454322 2  222211 1111       2


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +.+|++|+++|.
T Consensus        95 g~id~lvnnAg~  106 (270)
T 3is3_A           95 GHLDIAVSNSGV  106 (270)
T ss_dssp             SCCCEEECCCCC
T ss_pred             CCCCEEEECCCC
Confidence            378999999984

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.69  E-value=0.0046  Score=51.88  Aligned_cols=74  Identities=20%  Similarity=0.394  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC-----hhhHHHH----HHcCCCE-EE--cCCCcc-cccc-----
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS-----TAKLDLL----RSLGADL-AI--DYTKEN-IEDL-----  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~-----~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-----  211 (255)
                      .+++++|+||+|++|...++.+.. .|++|++++++     .++++.+    ++.+... .+  |-.+.. +.+.     
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~-~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~   82 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAG-AGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII   82 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            367999999999999998888887 49999988765     3343333    2334322 22  222211 1111     


Q ss_pred             --CCCccEEEECCCC
Q 025278          212 --PEKFDVVFDAVGK  224 (255)
Q Consensus       212 --~~~~d~vid~~G~  224 (255)
                        .+++|++|+++|.
T Consensus        83 ~~~g~iD~lVnnAG~   97 (324)
T 3u9l_A           83 GEDGRIDVLIHNAGH   97 (324)
T ss_dssp             HHHSCCSEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence              2379999999993

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.69  E-value=0.0054  Score=49.98  Aligned_cols=53  Identities=9%  Similarity=0.116  Sum_probs=39.4

Q ss_pred             cchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          132 LPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       132 l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      +||+.......++... -.|++++|.|+++-+|..+++++... +++|++..+..
T Consensus       132 ~PcTp~gv~~lL~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~-gAtVtv~~~~t  184 (276)
T 3ngx_A          132 VPATPRAVIDIMDYYG-YHENTVTIVNRSPVVGRPLSMMLLNR-NYTVSVCHSKT  184 (276)
T ss_dssp             CCHHHHHHHHHHHHHT-CCSCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTC
T ss_pred             CCCcHHHHHHHHHHhC-cCCCEEEEEcCChHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            3555445555565545 78999999996667999999999885 99988886543

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.69  E-value=0.0038  Score=50.25  Aligned_cols=69  Identities=26%  Similarity=0.330  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc-cc-------ccCCCccEEEEC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IE-------DLPEKFDVVFDA  221 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~-------~~~~~~d~vid~  221 (255)
                      -+++++|+||+|++|...+..+.. .|++|+++++++++.+.     ....++..+.. ..       +..+.+|++|++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~-----~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~   94 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKS-KSWNTISIDFRENPNAD-----HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCA   94 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCTTSS-----EEEECSCSSHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCcccccc-----cceEEEeCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            368999999999999998888877 49999999998765431     11122222211 11       113478999999


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      +|.
T Consensus        95 Ag~   97 (251)
T 3orf_A           95 AGG   97 (251)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            984

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.69  E-value=0.0053  Score=49.16  Aligned_cols=74  Identities=22%  Similarity=0.339  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHH----HHcCCCEE-E--cCCCcc-cccc-------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLL----RSLGADLA-I--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~----~~~g~~~v-~--~~~~~~-~~~~-------~~  213 (255)
                      .+++++|+||+|++|...+..+... |++|+++++ ++++.+.+    ++.+.+.. +  |-.+.. ....       .+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEE-GYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999988877774 999998876 44554433    33454322 2  222211 1111       23


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        82 ~id~lv~nAg~   92 (246)
T 3osu_A           82 SLDVLVNNAGI   92 (246)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.68  E-value=0.0023  Score=52.87  Aligned_cols=71  Identities=23%  Similarity=0.257  Sum_probs=47.4

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCccccccCCCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      ++|||+||+|.+|...++.+... |.+|+++++++++.......+...+ .|..+..+.+..++ |+||+++|.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~~   72 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVEL-GYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFAAN   72 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECCSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECCCC
Confidence            37999999999999999888874 9999999987654332222233222 22233223333345 999999984

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.67  E-value=0.0054  Score=48.78  Aligned_cols=73  Identities=21%  Similarity=0.355  Sum_probs=48.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------CCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------PEK  214 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------~~~  214 (255)
                      |++++|+||+|++|...++.+.. .|++|+++ .+++++.+.+    ++.+... .+  |..+.. ..+.       .++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~-~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGK-AGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999998888887 49999985 7877765543    2234322 22  222211 1111       237


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|++.|.
T Consensus        80 id~li~~Ag~   89 (244)
T 1edo_A           80 IDVVVNNAGI   89 (244)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.67  E-value=0.0039  Score=50.70  Aligned_cols=74  Identities=26%  Similarity=0.347  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC--CchHHHHHHHHHHHhcCCcEEEEecChhh-HHHH-HHcCCC-EE--EcCCCcc-cccc-------CC-
Q 025278          150 AGKSILVLGG--AGGVGTMVIQLAKHVFGASKVAATSSTAK-LDLL-RSLGAD-LA--IDYTKEN-IEDL-------PE-  213 (255)
Q Consensus       150 ~g~~VlI~ga--~g~~G~~a~~~a~~~~g~~vi~~~~~~~~-~~~~-~~~g~~-~v--~~~~~~~-~~~~-------~~-  213 (255)
                      .+++++|+|+  +|++|...++.+... |++|+++++++++ .+.+ ++++.. ..  .|-.+.. ..+.       .+ 
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQ-GAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHT-TCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHC-CCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999998  899999988887774 9999999988765 2433 344422 11  2332221 1111       12 


Q ss_pred             --CccEEEECCCC
Q 025278          214 --KFDVVFDAVGK  224 (255)
Q Consensus       214 --~~d~vid~~G~  224 (255)
                        ++|++|++.|.
T Consensus        85 ~~~iD~lv~nAg~   97 (269)
T 2h7i_A           85 GNKLDGVVHSIGF   97 (269)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             CCCceEEEECCcc
Confidence              79999999984

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.66  E-value=0.0046  Score=49.83  Aligned_cols=72  Identities=22%  Similarity=0.323  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE-EE--cCCCcc-cccc------CCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL-AI--DYTKEN-IEDL------PEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~-v~--~~~~~~-~~~~------~~~~d~vi  219 (255)
                      .++++||+||++++|.+.++.+... |++|++++++.++  ..++++... .+  |-.+.. ....      .+++|++|
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv   84 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDA-GAQVVVLDIRGED--VVADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVV   84 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCHH--HHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCchHH--HHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            4689999999999999988877774 9999999985543  334555332 22  222211 1111      24799999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      +++|.
T Consensus        85 ~nAg~   89 (257)
T 3tl3_A           85 NCAGT   89 (257)
T ss_dssp             ECGGG
T ss_pred             ECCCC
Confidence            99984

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=96.66  E-value=0.0079  Score=51.82  Aligned_cols=76  Identities=17%  Similarity=0.177  Sum_probs=49.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHH-hcCCcEEEEecChhh----------------HHHHHHcCCCE-EEcC--CCcc-
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKH-VFGASKVAATSSTAK----------------LDLLRSLGADL-AIDY--TKEN-  207 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~-~~g~~vi~~~~~~~~----------------~~~~~~~g~~~-v~~~--~~~~-  207 (255)
                      ..++++||+||++++|++.+..+.. . |++|++++++.++                .+.+++.|... .+..  .+.. 
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~-GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~  123 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGC-GADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI  123 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHH-CCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhc-CCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence            6678999999999999987766655 5 9999988765432                12345566433 2322  2221 


Q ss_pred             cc-------ccCCCccEEEECCCCc
Q 025278          208 IE-------DLPEKFDVVFDAVGKM  225 (255)
Q Consensus       208 ~~-------~~~~~~d~vid~~G~~  225 (255)
                      ..       +..+.+|+++++.|..
T Consensus       124 v~~~v~~i~~~~G~IDiLVNNAG~~  148 (405)
T 3zu3_A          124 KQLTIDAIKQDLGQVDQVIYSLASP  148 (405)
T ss_dssp             HHHHHHHHHHHTSCEEEEEECCCCS
T ss_pred             HHHHHHHHHHHcCCCCEEEEcCccc
Confidence            11       1135799999998853

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.66  E-value=0.0037  Score=50.96  Aligned_cols=74  Identities=23%  Similarity=0.307  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-EE--cCCCcc-cccc-------CCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-AI--DYTKEN-IEDL-------PEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~~~-------~~~  214 (255)
                      .+++++|+||+|++|...+..+... |++|+++++++++.+.+    ++.+... .+  |..+.+ ..+.       .+.
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  111 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQA-GADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGT  111 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHH-TCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            4789999999999999988877774 99999999887665443    2234332 22  222211 1111       135


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus       112 id~li~~Ag~  121 (279)
T 3ctm_A          112 IDVFVANAGV  121 (279)
T ss_dssp             CSEEEECGGG
T ss_pred             CCEEEECCcc
Confidence            8999999883

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.65  E-value=0.003  Score=52.79  Aligned_cols=89  Identities=22%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccce
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~  228 (255)
                      -.|++|.|+| .|.+|...++.++.. |.+|++.+++.++. .++++|+...      +..+.....|+|+.++......
T Consensus       140 l~g~~vgIIG-~G~IG~~~A~~l~~~-G~~V~~~d~~~~~~-~~~~~g~~~~------~l~ell~~aDvVvl~~P~~~~t  210 (313)
T 2ekl_A          140 LAGKTIGIVG-FGRIGTKVGIIANAM-GMKVLAYDILDIRE-KAEKINAKAV------SLEELLKNSDVISLHVTVSKDA  210 (313)
T ss_dssp             CTTCEEEEES-CSHHHHHHHHHHHHT-TCEEEEECSSCCHH-HHHHTTCEEC------CHHHHHHHCSEEEECCCCCTTS
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHHC-CCEEEEECCCcchh-HHHhcCceec------CHHHHHhhCCEEEEeccCChHH
Confidence            4678999999 999999999999985 99999999887765 4667786421      2233334679999988743322


Q ss_pred             e-----eeeeccccCCceEEEEee
Q 025278          229 I-----VYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       229 ~-----~~~~~~~~~~G~~v~~G~  247 (255)
                      .     ..+..++ +++.++.++.
T Consensus       211 ~~li~~~~l~~mk-~ga~lIn~ar  233 (313)
T 2ekl_A          211 KPIIDYPQFELMK-DNVIIVNTSR  233 (313)
T ss_dssp             CCSBCHHHHHHSC-TTEEEEESSC
T ss_pred             HHhhCHHHHhcCC-CCCEEEECCC
Confidence            1     1223344 5566776665

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.64  E-value=0.0077  Score=49.69  Aligned_cols=74  Identities=19%  Similarity=0.279  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh--hhHHHH----HHcCCCEEE---cCCCcc-ccc-------cC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST--AKLDLL----RSLGADLAI---DYTKEN-IED-------LP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~--~~~~~~----~~~g~~~v~---~~~~~~-~~~-------~~  212 (255)
                      .|+++||+||++++|...+..+... |++|++++++.  ++.+.+    ++.|....+   |-.+.. ...       ..
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYARE-GADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999988877774 99999988763  233222    344544332   222211 111       12


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|++.|.
T Consensus       127 g~iD~lv~nAg~  138 (294)
T 3r3s_A          127 GGLDILALVAGK  138 (294)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999984

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.64  E-value=0.0015  Score=51.99  Aligned_cols=39  Identities=21%  Similarity=0.446  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL  189 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~  189 (255)
                      .+++++|+||+|++|...++.+... |++|+++++++++.
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~   40 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKN-GYTVLNIDLSANDQ   40 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCCTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEecCcccc
Confidence            3678999999999999988888874 99999999987653

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.62  E-value=0.0022  Score=51.23  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL  189 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~  189 (255)
                      ..+++++|+||+|++|...++.+.. .|++|+++++++++.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~   44 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRA-RNWWVASIDVVENEE   44 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHT-TTCEEEEEESSCCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEeCChhhc
Confidence            4578999999999999998888877 499999999987653

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.61  E-value=0.005  Score=49.51  Aligned_cols=76  Identities=24%  Similarity=0.320  Sum_probs=47.6

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-cChhhHHH----HHHcCCC-EEEcCCCcccc----------cc
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDL----LRSLGAD-LAIDYTKENIE----------DL  211 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~~~~~~~~----~~~~g~~-~v~~~~~~~~~----------~~  211 (255)
                      ..++++|||+||+|++|...+..+... |++|++++ ++.++.+.    .++.+.+ ..+..+-.+..          +.
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKD-GFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHT-TEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            456789999999999999988877774 99999887 54444332    2334432 22222211111          11


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+++|++|+++|.
T Consensus        89 ~g~id~lv~~Ag~  101 (256)
T 3ezl_A           89 VGEIDVLVNNAGI  101 (256)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            3479999999984

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.61  E-value=0.0038  Score=48.01  Aligned_cols=103  Identities=11%  Similarity=0.004  Sum_probs=66.2

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCC---CEEEcCCCccccc-cCCC
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGA---DLAIDYTKENIED-LPEK  214 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~---~~v~~~~~~~~~~-~~~~  214 (255)
                      ....++++++||-.| +|. |..+..+++..+ ..++++++.+++.++.+++    .|.   -.++..+..++.. ..+.
T Consensus        16 ~~~~~~~~~~vLDlG-cG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~   93 (197)
T 3eey_A           16 IKMFVKEGDTVVDAT-CGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCP   93 (197)
T ss_dssp             HHHHCCTTCEEEESC-CTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSC
T ss_pred             HHhcCCCCCEEEEcC-CCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCC
Confidence            345678899999998 555 888888888752 3699999999998887754    332   1233333223321 2357


Q ss_pred             ccEEEECCCC-c--------------cceeeeeeccccCCceEEEEeecc
Q 025278          215 FDVVFDAVGK-M--------------CISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       215 ~d~vid~~G~-~--------------~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +|+|+-..+- +              .....+.+.++ ++|++++....+
T Consensus        94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~~  142 (197)
T 3eey_A           94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLV-TGGIITVVIYYG  142 (197)
T ss_dssp             EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEE-EEEEEEEEECCB
T ss_pred             ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCc-CCCEEEEEEccC
Confidence            9999965432 1              22334456666 789998876543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.58  E-value=0.0037  Score=51.18  Aligned_cols=99  Identities=14%  Similarity=0.182  Sum_probs=65.2

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc----CCC---EEEcCCCccccccCCCc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL----GAD---LAIDYTKENIEDLPEKF  215 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~~  215 (255)
                      ++...++++++||-+| +|. |..+..+++.. +.++++++.+++..+.+++.    |..   .++..   +..+..+.+
T Consensus        57 ~~~~~~~~~~~vLDiG-cG~-G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~f  130 (287)
T 1kpg_A           57 LGKLGLQPGMTLLDVG-CGW-GATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA---GWEQFDEPV  130 (287)
T ss_dssp             HTTTTCCTTCEEEEET-CTT-SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES---CGGGCCCCC
T ss_pred             HHHcCCCCcCEEEEEC-Ccc-cHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC---ChhhCCCCe
Confidence            3556788999999999 555 88888898775 88999999999988877643    321   12222   222333679


Q ss_pred             cEEEECC-----CC---ccceeeeeeccccCCceEEEEeec
Q 025278          216 DVVFDAV-----GK---MCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       216 d~vid~~-----G~---~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      |+|+..-     +.   ......+.+.++ ++|++++....
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  170 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTIT  170 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEEE
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHhcC-CCCEEEEEEec
Confidence            9999652     21   122333455666 88998876543

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.58  E-value=0.0063  Score=50.24  Aligned_cols=74  Identities=23%  Similarity=0.403  Sum_probs=50.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC-----hhhHHHHH---HcCCCEE-EcCCCc-cccccCCCccEEEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS-----TAKLDLLR---SLGADLA-IDYTKE-NIEDLPEKFDVVFD  220 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~-----~~~~~~~~---~~g~~~v-~~~~~~-~~~~~~~~~d~vid  220 (255)
                      .++|+|+||+|.+|...+..+... |.+|++++++     +++.+.++   ..+...+ .|..+. .+.+..+++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~   82 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   82 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence            357999999999999999888874 8999999987     44544433   2344322 222221 23333468999999


Q ss_pred             CCCCc
Q 025278          221 AVGKM  225 (255)
Q Consensus       221 ~~G~~  225 (255)
                      ++|..
T Consensus        83 ~a~~~   87 (313)
T 1qyd_A           83 ALAGG   87 (313)
T ss_dssp             CCCCS
T ss_pred             CCccc
Confidence            98843

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.58  E-value=0.0076  Score=48.50  Aligned_cols=74  Identities=20%  Similarity=0.289  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHH-HHH----HcCCCE-EE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLD-LLR----SLGADL-AI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~-~~~----~~g~~~-v~--~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+||+|++|...+..+.. .|++|++++++.++.. .++    +.+... .+  |..+.. +.+       ..+
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   91 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAA-AGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   91 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHH-TTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            467899999999999998888777 4999999998655432 222    234332 22  322221 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|+++|.
T Consensus        92 ~id~li~~Ag~  102 (265)
T 1h5q_A           92 PISGLIANAGV  102 (265)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999984

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.58  E-value=0.009  Score=50.95  Aligned_cols=68  Identities=19%  Similarity=0.179  Sum_probs=49.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH-HHHcCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL-LRSLGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      -.|++|+|+| .|.+|..+++.+... |++|++.+++.++++. ++++|++.+ +.. ..   ....+|+++-|.-
T Consensus       171 L~GktV~V~G-~G~VG~~~A~~L~~~-GakVvv~D~~~~~l~~~a~~~ga~~v-~~~-~l---l~~~~DIvip~a~  239 (364)
T 1leh_A          171 LEGLAVSVQG-LGNVAKALCKKLNTE-GAKLVVTDVNKAAVSAAVAEEGADAV-APN-AI---YGVTCDIFAPCAL  239 (364)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHCCEEC-CGG-GT---TTCCCSEEEECSC
T ss_pred             CCcCEEEEEC-chHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHcCCEEE-ChH-HH---hccCCcEeeccch
Confidence            5789999999 899999999999996 9999999999888774 456776543 211 11   1135677776643

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.57  E-value=0.0013  Score=53.49  Aligned_cols=70  Identities=17%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      +++|+|+||+|++|...+..+... |.+|+++++++.+..   ..+...+ .|-.+. .+.+..+++|+||++.|.
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~-G~~V~~~~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~   74 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPM-AEILRLADLSPLDPA---GPNEECVQCDLADANAVNAMVAGCDGIVHLGGI   74 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGG-EEEEEEEESSCCCCC---CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhc-CCEEEEEecCCcccc---CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence            468999999999999988888774 899999998876543   1122111 222221 222334589999999984

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.56  E-value=0.018  Score=49.24  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=63.5

Q ss_pred             HHHHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecC----hhh---------HHHHHHcCCCEEEcC
Q 025278          139 AYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSS----TAK---------LDLLRSLGADLAIDY  203 (255)
Q Consensus       139 a~~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~----~~~---------~~~~~~~g~~~v~~~  203 (255)
                      .+.+++..+ --...+|+|+| +|..|..+++++..+ |. ++++++++    .+|         ..++++.+.    ..
T Consensus       179 l~~A~~i~g~~l~~~kVVv~G-AGaAG~~iAkll~~~-G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~----~~  252 (388)
T 1vl6_A          179 FLNALKLTEKKIEEVKVVVNG-IGAAGYNIVKFLLDL-GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP----ER  252 (388)
T ss_dssp             HHHHHHHHTCCTTTCEEEEEC-CSHHHHHHHHHHHHH-TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TC
T ss_pred             HHHHHHHhCCCCCCcEEEEEC-CCHHHHHHHHHHHhC-CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc----cC
Confidence            344454333 23567899999 899999999999997 66 78889887    544         344444321    11


Q ss_pred             CCccccccCCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          204 TKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       204 ~~~~~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ...++.+..+++|++|-+++.........+.++ ++-.++-+.++.
T Consensus       253 ~~~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma-~~pIIfalSNPt  297 (388)
T 1vl6_A          253 LSGDLETALEGADFFIGVSRGNILKPEWIKKMS-RKPVIFALANPV  297 (388)
T ss_dssp             CCSCHHHHHTTCSEEEECSCSSCSCHHHHTTSC-SSCEEEECCSSS
T ss_pred             chhhHHHHHccCCEEEEeCCCCccCHHHHHhcC-CCCEEEEcCCCC
Confidence            223455555678999998884332333333343 344554444443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.56  E-value=0.0075  Score=49.30  Aligned_cols=70  Identities=23%  Similarity=0.414  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCC--CE-EEcCCCccccccC-CCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGA--DL-AIDYTKENIEDLP-EKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~--~~-v~~~~~~~~~~~~-~~~d~vid~~G~  224 (255)
                      .+++++|+| +|++|.+++..+... |.+++++.++.+|.+.+ ++++.  .. +.+     +.+.. +.+|++|++++.
T Consensus       118 ~~~~vlvlG-aGg~g~a~a~~L~~~-G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~-----~~~~~~~~~DivIn~t~~  190 (272)
T 1p77_A          118 PNQHVLILG-AGGATKGVLLPLLQA-QQNIVLANRTFSKTKELAERFQPYGNIQAVS-----MDSIPLQTYDLVINATSA  190 (272)
T ss_dssp             TTCEEEEEC-CSHHHHTTHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGGSCEEEEE-----GGGCCCSCCSEEEECCCC
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHccccCCeEEee-----HHHhccCCCCEEEECCCC
Confidence            578999999 699999988888775 78999999998887655 44432  11 222     12222 379999999995


Q ss_pred             cc
Q 025278          225 MC  226 (255)
Q Consensus       225 ~~  226 (255)
                      ..
T Consensus       191 ~~  192 (272)
T 1p77_A          191 GL  192 (272)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.56  E-value=0.002  Score=52.29  Aligned_cols=70  Identities=16%  Similarity=0.232  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE--cCCCcc-ccc-------cCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI--DYTKEN-IED-------LPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~--~~~~~~-~~~-------~~~~~d~vi  219 (255)
                      .++++||+||+|++|.+.+..+.. .|++|++++++.++.+..   .. ..+  |-.+.. ..+       ..+++|++|
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~---~~-~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv  101 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRD-RNYRVVATSRSIKPSADP---DI-HTVAGDISKPETADRIVREGIERFGRIDSLV  101 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSCCCCSST---TE-EEEESCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCChhhcccC---ce-EEEEccCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            578999999999999998887777 499999999876543211   11 122  222221 111       123799999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      +++|.
T Consensus       102 ~nAg~  106 (260)
T 3un1_A          102 NNAGV  106 (260)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99984

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.55  E-value=0.0029  Score=53.20  Aligned_cols=70  Identities=19%  Similarity=0.173  Sum_probs=47.3

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      -..+++|||+||+|.+|...++.+... |.+|+++++++++      .+...+ .|..+. .+.+...++|+||.+.+.
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQ-GRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHT-TCCEEEEESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            356789999999999999999888884 9999999988765      233332 222222 123334589999999884

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.55  E-value=0.00097  Score=53.94  Aligned_cols=75  Identities=17%  Similarity=0.354  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecCh-------------------hhHHHH----HHcCCC-EE--EcC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSST-------------------AKLDLL----RSLGAD-LA--IDY  203 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~-------------------~~~~~~----~~~g~~-~v--~~~  203 (255)
                      +.+|+|.| +|++|..+++.+... |. ++.+++++.                   .|.+.+    ++++.+ .+  ++.
T Consensus        31 ~~~VlVvG-~Gg~G~~va~~La~~-Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           31 DSRVLIVG-LGGLGCAASQYLASA-GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHHH-TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             CCeEEEEe-eCHHHHHHHHHHHHc-CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            46899999 899999988888776 65 777788776                   565544    233322 11  111


Q ss_pred             --CCccccccCCCccEEEECCCCccc
Q 025278          204 --TKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       204 --~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                        ...+..+..+++|+||+|++...+
T Consensus       109 ~~~~~~~~~~~~~~DvVi~~~d~~~~  134 (249)
T 1jw9_B          109 LLDDAELAALIAEHDLVLDCTDNVAV  134 (249)
T ss_dssp             CCCHHHHHHHHHTSSEEEECCSSHHH
T ss_pred             cCCHhHHHHHHhCCCEEEEeCCCHHH
Confidence              111222233579999999986654

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.54  E-value=0.02  Score=48.29  Aligned_cols=100  Identities=13%  Similarity=0.091  Sum_probs=64.1

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEec---ChhhHHHHHHc-------CCC-------EEEcC------CCcccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATS---STAKLDLLRSL-------GAD-------LAIDY------TKENIE  209 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~---~~~~~~~~~~~-------g~~-------~v~~~------~~~~~~  209 (255)
                      +|.|.| .|-+|...++++......+++++..   +.+++..+.++       ...       ..++.      ...+..
T Consensus         5 kVgI~G-~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~   83 (335)
T 1u8f_O            5 KVGVNG-FGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   83 (335)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             EEEEEc-cCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence            789999 6999999999877655788887753   55565555432       111       11211      111222


Q ss_pred             cc---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCCCC
Q 025278          210 DL---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVPK  254 (255)
Q Consensus       210 ~~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~~~  254 (255)
                      +.   ..++|+||+|+|.......+...++ .+-+.|.+..++.+.|+
T Consensus        84 ~l~~~~~~vDvV~eatg~~~~~e~a~~~l~-aGak~V~iSap~~~~p~  130 (335)
T 1u8f_O           84 KIKWGDAGAEYVVESTGVFTTMEKAGAHLQ-GGAKRVIISAPSADAPM  130 (335)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSHHHHGGGGG-GTCSEEEESSCCSSSCB
T ss_pred             HCccccCCCCEEEECCCchhhHHHHHHHHh-CCCeEEEeccCCCCCCe
Confidence            22   1489999999998877666666665 33388888877655543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.53  E-value=0.0035  Score=50.63  Aligned_cols=96  Identities=17%  Similarity=0.243  Sum_probs=61.4

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC-EEEcCCCccccccCCCccEEEECC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD-LAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      ++++++||-.| +|. |.+++.+++.  +.++++++.++...+.+++    .+.+ .++..+-.+.. ..+.+|+|+-..
T Consensus       118 ~~~~~~VLDiG-cG~-G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~-~~~~fD~Vv~n~  192 (254)
T 2nxc_A          118 LRPGDKVLDLG-TGS-GVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL-PFGPFDLLVANL  192 (254)
T ss_dssp             CCTTCEEEEET-CTT-SHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHG-GGCCEEEEEEEC
T ss_pred             cCCCCEEEEec-CCC-cHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcC-cCCCCCEEEECC
Confidence            67899999999 665 8888887774  5599999999998887754    3432 22222111110 124799999653


Q ss_pred             CC---ccceeeeeeccccCCceEEEEeecc
Q 025278          223 GK---MCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       223 G~---~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      -.   ......+.+.++ ++|++++.|...
T Consensus       193 ~~~~~~~~l~~~~~~Lk-pgG~lils~~~~  221 (254)
T 2nxc_A          193 YAELHAALAPRYREALV-PGGRALLTGILK  221 (254)
T ss_dssp             CHHHHHHHHHHHHHHEE-EEEEEEEEEEEG
T ss_pred             cHHHHHHHHHHHHHHcC-CCCEEEEEeecc
Confidence            21   122233345566 789999987654

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.53  E-value=0.008  Score=48.80  Aligned_cols=75  Identities=24%  Similarity=0.341  Sum_probs=47.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-cChhhHHHH----HHcCCC-EEE--cCCCcc-ccc-------cC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLL----RSLGAD-LAI--DYTKEN-IED-------LP  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~~~~~~~~~----~~~g~~-~v~--~~~~~~-~~~-------~~  212 (255)
                      ..+++++|+||++++|...++.+.. .|++|++++ ++.++.+..    ++.+.. ..+  |-.+.. ..+       ..
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHD-AGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHT-TTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4578999999999999998888777 499999988 555444332    223322 222  222211 111       12


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +.+|++|+++|.
T Consensus       102 g~id~li~nAg~  113 (269)
T 3gk3_A          102 GKVDVLINNAGI  113 (269)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            379999999984

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.52  E-value=0.00099  Score=53.59  Aligned_cols=70  Identities=21%  Similarity=0.353  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc-cccc-------CCCccEEEEC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IEDL-------PEKFDVVFDA  221 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~-------~~~~d~vid~  221 (255)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+.  +  ...|..+.+ ..+.       .+++|++|++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~--~--~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~   88 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAA-DGHKVAVTHRGSGAPKGLF--G--VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   88 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSSCCCTTSE--E--EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCChHHHHHhc--C--eeccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            578999999999999998888777 4999999998876543221  1  223333321 1111       2368999999


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      .|.
T Consensus        89 Ag~   91 (247)
T 1uzm_A           89 AGL   91 (247)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            984

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.52  E-value=0.0026  Score=54.11  Aligned_cols=75  Identities=21%  Similarity=0.173  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCCEE-EcCC-Cc-cccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADLA-IDYT-KE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~v-~~~~-~~-~~~~~~~~~d~vid~~G~  224 (255)
                      .+++|||+||+|.+|...+..+....|.+|+++++++++...+.+ .+...+ .|.. +. .+.+..+++|+||.+++.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~  101 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAI  101 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCcc
Confidence            357899999999999998888776348999999998876654433 233222 1222 11 122233479999999884

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.51  E-value=0.0036  Score=53.17  Aligned_cols=70  Identities=23%  Similarity=0.322  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHH-HhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAK-HVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~-~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      -.|++|.|+| .|.+|...++.++ .. |.+|++.+++.++.+.++++|...+     .+..+..+..|+|+.++...
T Consensus       161 l~g~~vgIIG-~G~IG~~vA~~l~~~~-G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~~aDvVil~vp~~  231 (348)
T 2w2k_A          161 PRGHVLGAVG-LGAIQKEIARKAVHGL-GMKLVYYDVAPADAETEKALGAERV-----DSLEELARRSDCVSVSVPYM  231 (348)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECSSCCCHHHHHHHTCEEC-----SSHHHHHHHCSEEEECCCCS
T ss_pred             CCCCEEEEEE-ECHHHHHHHHHHHHhc-CCEEEEECCCCcchhhHhhcCcEEe-----CCHHHHhccCCEEEEeCCCC
Confidence            4578999999 9999999999998 74 8999999998877766666775432     12233334678998888754

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.51  E-value=0.0075  Score=48.60  Aligned_cols=43  Identities=16%  Similarity=0.240  Sum_probs=35.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHh--cCCcEEEEecChhhHHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHV--FGASKVAATSSTAKLDLL  192 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~--~g~~vi~~~~~~~~~~~~  192 (255)
                      .+++++|+||+|++|...+..+...  .|++|+++++++++.+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~   49 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHH
Confidence            4678999999999999988777651  289999999998876654

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.48  E-value=0.0039  Score=57.02  Aligned_cols=74  Identities=23%  Similarity=0.334  Sum_probs=45.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec---------ChhhHHHH----HHcCCCEEEcCCCcc-ccc-----
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS---------STAKLDLL----RSLGADLAIDYTKEN-IED-----  210 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~---------~~~~~~~~----~~~g~~~v~~~~~~~-~~~-----  210 (255)
                      .|++++|+||++++|.+.+..+.. .|++|+++++         +.++.+.+    ++.+...+.|..+.. ..+     
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~-~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~   96 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAE-RGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETA   96 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Confidence            578999999999999998887777 4999999876         44444332    345655556654432 111     


Q ss_pred             --cCCCccEEEECCCC
Q 025278          211 --LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 --~~~~~d~vid~~G~  224 (255)
                        ..+.+|++|+++|.
T Consensus        97 ~~~~g~iDiLVnnAGi  112 (613)
T 3oml_A           97 IKAFGRVDILVNNAGI  112 (613)
T ss_dssp             --------CEECCCCC
T ss_pred             HHHCCCCcEEEECCCC
Confidence              12368999999994

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.48  E-value=0.013  Score=48.47  Aligned_cols=69  Identities=17%  Similarity=0.119  Sum_probs=54.2

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      .+|.|+| +|.+|...+..+... |.+|++.++++++.+.+.+.|.....+    +..+..+..|+||-|+..+.
T Consensus         8 ~~I~iIG-~G~mG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~----~~~e~~~~aDvvi~~vp~~~   76 (303)
T 3g0o_A            8 FHVGIVG-LGSMGMGAARSCLRA-GLSTWGADLNPQACANLLAEGACGAAA----SAREFAGVVDALVILVVNAA   76 (303)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCSEEES----SSTTTTTTCSEEEECCSSHH
T ss_pred             CeEEEEC-CCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHcCCccccC----CHHHHHhcCCEEEEECCCHH
Confidence            5799999 999999988887774 899999999999999998888764222    22333457899999998653

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.48  E-value=0.003  Score=53.54  Aligned_cols=74  Identities=22%  Similarity=0.283  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHH--hcCCcEEEEecChhhHH-------------HHHHcCCCEE-EcCCCc-ccccc-
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKH--VFGASKVAATSSTAKLD-------------LLRSLGADLA-IDYTKE-NIEDL-  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~--~~g~~vi~~~~~~~~~~-------------~~~~~g~~~v-~~~~~~-~~~~~-  211 (255)
                      .+++|||+||+|.+|...+..+..  . |.+|++++++.....             .....+...+ .|..+. .+... 
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   87 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHP-KAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLE   87 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCT-TSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCC-CCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhh
Confidence            468999999999999998888776  4 899999998654111             1111122211 222221 12233 


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      ..++|+||+++|.
T Consensus        88 ~~~~D~vih~A~~  100 (362)
T 3sxp_A           88 KLHFDYLFHQAAV  100 (362)
T ss_dssp             TSCCSEEEECCCC
T ss_pred             ccCCCEEEECCcc
Confidence            5689999999984

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.47  E-value=0.0022  Score=54.75  Aligned_cols=81  Identities=16%  Similarity=0.253  Sum_probs=56.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCc-cccccCCCccEEEECCCCccceee
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKE-NIEDLPEKFDVVFDAVGKMCISIV  230 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~d~vid~~G~~~~~~~  230 (255)
                      .+|+|+| +|.+|..++..+..  ...+.+.+++.++++.+++......+|..+. ...+..++.|+||+|++.......
T Consensus        17 mkilvlG-aG~vG~~~~~~L~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~v   93 (365)
T 3abi_A           17 MKVLILG-AGNIGRAIAWDLKD--EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFKS   93 (365)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTT--TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHHH
T ss_pred             cEEEEEC-CCHHHHHHHHHHhc--CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccchH
Confidence            4799999 59999998888764  5788888999999888876543334444332 233345689999999986543333


Q ss_pred             eeecc
Q 025278          231 YQKCD  235 (255)
Q Consensus       231 ~~~~~  235 (255)
                      +..++
T Consensus        94 ~~~~~   98 (365)
T 3abi_A           94 IKAAI   98 (365)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33444

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.47  E-value=0.0043  Score=52.03  Aligned_cols=89  Identities=12%  Similarity=0.040  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccce
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~  228 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.++ +.++ +.++++|+.. .    .+..+.....|+|+-++......
T Consensus       145 ~g~~vgIIG-~G~IG~~~A~~l~~~-G~~V~~~d~~~~~~-~~~~~~g~~~-~----~~l~ell~~aDvVil~~p~~~~t  216 (320)
T 1gdh_A          145 DNKTLGIYG-FGSIGQALAKRAQGF-DMDIDYFDTHRASS-SDEASYQATF-H----DSLDSLLSVSQFFSLNAPSTPET  216 (320)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECSSCCCH-HHHHHHTCEE-C----SSHHHHHHHCSEEEECCCCCTTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHC-CCEEEEECCCCcCh-hhhhhcCcEE-c----CCHHHHHhhCCEEEEeccCchHH
Confidence            578999999 999999999999985 899999998 7766 3566677642 1    12333344689999988743221


Q ss_pred             ee-----eeeccccCCceEEEEee
Q 025278          229 IV-----YQKCDKFQEKSLINFGL  247 (255)
Q Consensus       229 ~~-----~~~~~~~~~G~~v~~G~  247 (255)
                      ..     .+..++ ++..++.+|.
T Consensus       217 ~~~i~~~~l~~mk-~gailIn~ar  239 (320)
T 1gdh_A          217 RYFFNKATIKSLP-QGAIVVNTAR  239 (320)
T ss_dssp             TTCBSHHHHTTSC-TTEEEEECSC
T ss_pred             HhhcCHHHHhhCC-CCcEEEECCC
Confidence            11     223344 5566777665

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=96.47  E-value=0.0046  Score=47.84  Aligned_cols=69  Identities=25%  Similarity=0.365  Sum_probs=47.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCcc---ccccC---CCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKEN---IEDLP---EKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~---~~~~~---~~~d~vid~~G~  224 (255)
                      ++++|+||+|++|...++.+..  . +|+++++++++.+.+. +++. ..+..+-.+   ..+..   +++|++|++.|.
T Consensus         1 k~vlVtGasg~iG~~la~~l~~--~-~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   76 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKG--H-DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEEAGPLDLLVHAVGK   76 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTT--S-EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHh--C-CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            4789999999999998887765  3 8999999988776653 3443 333222222   11112   379999999984

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.47  E-value=0.018  Score=47.10  Aligned_cols=74  Identities=15%  Similarity=0.223  Sum_probs=51.6

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHH-HHHcCCCEEEcCCCccccccCCCccEEEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDL-LRSLGADLAIDYTKENIEDLPEKFDVVFD  220 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~~d~vid  220 (255)
                      ++......+++++|+| +|+.+.+++..+... |+ ++.++.|+.+|.+. +++++.+.  ..   ...  ...+|+||+
T Consensus       111 l~~~~~~~~~~vlvlG-aGgaarav~~~L~~~-G~~~i~v~nRt~~ka~~la~~~~~~~--~~---~~~--~~~~DivIn  181 (271)
T 1npy_A          111 IEKYHLNKNAKVIVHG-SGGMAKAVVAAFKNS-GFEKLKIYARNVKTGQYLAALYGYAY--IN---SLE--NQQADILVN  181 (271)
T ss_dssp             HHHTTCCTTSCEEEEC-SSTTHHHHHHHHHHT-TCCCEEEECSCHHHHHHHHHHHTCEE--ES---CCT--TCCCSEEEE
T ss_pred             HHHhCCCCCCEEEEEC-CcHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHcCCcc--ch---hhh--cccCCEEEE
Confidence            3333344678999999 899999988888875 65 78899999887654 45666521  11   111  247899999


Q ss_pred             CCCCc
Q 025278          221 AVGKM  225 (255)
Q Consensus       221 ~~G~~  225 (255)
                      |++..
T Consensus       182 aTp~g  186 (271)
T 1npy_A          182 VTSIG  186 (271)
T ss_dssp             CSSTT
T ss_pred             CCCCC
Confidence            98843

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.46  E-value=0.0037  Score=53.09  Aligned_cols=89  Identities=18%  Similarity=0.173  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++. +.+.+.+.|+..+     .+..+..+..|+|+-++.......
T Consensus       159 ~g~tvGIIG-lG~IG~~vA~~l~~~-G~~V~~~d~~~-~~~~~~~~g~~~~-----~~l~ell~~aDiV~l~~Plt~~t~  230 (352)
T 3gg9_A          159 KGQTLGIFG-YGKIGQLVAGYGRAF-GMNVLVWGREN-SKERARADGFAVA-----ESKDALFEQSDVLSVHLRLNDETR  230 (352)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSHH-HHHHHHHTTCEEC-----SSHHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhC-CCEEEEECCCC-CHHHHHhcCceEe-----CCHHHHHhhCCEEEEeccCcHHHH
Confidence            478999999 999999999999985 99999999875 3455667776432     123333456799998876332111


Q ss_pred             -----eeeeccccCCceEEEEee
Q 025278          230 -----VYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       230 -----~~~~~~~~~~G~~v~~G~  247 (255)
                           ..+..++ ++..++.+|.
T Consensus       231 ~li~~~~l~~mk-~gailIN~aR  252 (352)
T 3gg9_A          231 SIITVADLTRMK-PTALFVNTSR  252 (352)
T ss_dssp             TCBCHHHHTTSC-TTCEEEECSC
T ss_pred             HhhCHHHHhhCC-CCcEEEECCC
Confidence                 1233444 5677777774

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.45  E-value=0.0071  Score=47.87  Aligned_cols=100  Identities=19%  Similarity=0.106  Sum_probs=64.5

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcC---CCE-EEcCCCccc---cccCCCc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLG---ADL-AIDYTKENI---EDLPEKF  215 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g---~~~-v~~~~~~~~---~~~~~~~  215 (255)
                      +....++++++||-.| +|. |..+..+++..+..+|++++.+++.++.+++.-   ... .+..+..+.   ......+
T Consensus        67 l~~~~~~~~~~VLDlG-cG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLG-ASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV  144 (230)
T ss_dssp             CCCCCCCTTCEEEEES-CCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCE
T ss_pred             ccccCCCCCCEEEEEc-ccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccE
Confidence            4455678899999999 665 888888988753378999999998887775421   111 222222211   1112579


Q ss_pred             cEEEECCCCc---cc-eeeeeeccccCCceEEEE
Q 025278          216 DVVFDAVGKM---CI-SIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       216 d~vid~~G~~---~~-~~~~~~~~~~~~G~~v~~  245 (255)
                      |+|+.....+   .. ...+.+.++ ++|++++.
T Consensus       145 D~v~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~  177 (230)
T 1fbn_A          145 DVIYEDVAQPNQAEILIKNAKWFLK-KGGYGMIA  177 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EEEEEecCChhHHHHHHHHHHHhCC-CCcEEEEE
Confidence            9999655443   22 344455666 78998886

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.44  E-value=0.0053  Score=50.94  Aligned_cols=73  Identities=29%  Similarity=0.444  Sum_probs=50.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-hHHHH---HHcCCCEE-EcCCCc-cccccCCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-KLDLL---RSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-~~~~~---~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~~  225 (255)
                      ++|+|+||+|.+|...+..+... |.+|++++++++ +.+.+   +..|...+ .|..+. .+.+..+++|+||.+++..
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~   90 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKL-GHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFP   90 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CeEEEECCCchHHHHHHHHHHHC-CCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchh
Confidence            47999999999999999888874 899999998764 44333   34455433 233221 2333346899999999843

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.44  E-value=0.018  Score=45.93  Aligned_cols=100  Identities=19%  Similarity=0.121  Sum_probs=64.7

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCCCc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPEKF  215 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~  215 (255)
                      +....++++++||-+| +|. |..+..+++.. +.++++++.+++.++.+++    .|..   .++..+..+... .+.+
T Consensus        29 ~~~~~~~~~~~VLDiG-cG~-G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~f  104 (256)
T 1nkv_A           29 GRVLRMKPGTRILDLG-SGS-GEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKC  104 (256)
T ss_dssp             HHHTCCCTTCEEEEET-CTT-CHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCE
T ss_pred             HHhcCCCCCCEEEEEC-CCC-CHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCC
Confidence            4556788999999999 655 88888999885 8899999999988877743    3422   222222222211 3579


Q ss_pred             cEEEECCC------CccceeeeeeccccCCceEEEEee
Q 025278          216 DVVFDAVG------KMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       216 d~vid~~G------~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      |+|+-.-.      .......+.+.++ ++|++++.-.
T Consensus       105 D~V~~~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~  141 (256)
T 1nkv_A          105 DVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEP  141 (256)
T ss_dssp             EEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEE
T ss_pred             CEEEECCChHhcCCHHHHHHHHHHHcC-CCeEEEEecC
Confidence            99995321      1122333455666 7898887643

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.44  E-value=0.0051  Score=50.27  Aligned_cols=73  Identities=27%  Similarity=0.366  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE-EE--cCCCcc-cc------ccCCCccEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL-AI--DYTKEN-IE------DLPEKFDVV  218 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~-~~------~~~~~~d~v  218 (255)
                      .++++||+||++++|.+.++.+.. .|++|++++++.++.+.+ ++++... .+  |-.+.+ ..      +..+++|++
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l  107 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHA-DGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA  107 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence            578999999999999998888877 499999999999887765 4555432 22  222211 11      112478999


Q ss_pred             EECCC
Q 025278          219 FDAVG  223 (255)
Q Consensus       219 id~~G  223 (255)
                      |.+.+
T Consensus       108 v~~aa  112 (281)
T 3ppi_A          108 VVAHG  112 (281)
T ss_dssp             EECCC
T ss_pred             EEccC
Confidence            99833

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.42  E-value=0.0092  Score=48.42  Aligned_cols=66  Identities=21%  Similarity=0.257  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH-HHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL-LRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      .| +++|+| +|.+|.+.+..+... |.++++.+++.++.+. ++++|..  ++    +..+. +..|+|+.|++..
T Consensus       116 ~~-~v~iiG-~G~~g~~~a~~l~~~-g~~v~v~~r~~~~~~~l~~~~~~~--~~----~~~~~-~~~Divi~~tp~~  182 (263)
T 2d5c_A          116 KG-PALVLG-AGGAGRAVAFALREA-GLEVWVWNRTPQRALALAEEFGLR--AV----PLEKA-REARLLVNATRVG  182 (263)
T ss_dssp             CS-CEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHHTCE--EC----CGGGG-GGCSEEEECSSTT
T ss_pred             CC-eEEEEC-CcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhccc--hh----hHhhc-cCCCEEEEccCCC
Confidence            45 899999 899999998888875 7789899999887654 4566763  21    33444 6799999999865

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.41  E-value=0.0099  Score=49.32  Aligned_cols=74  Identities=16%  Similarity=0.332  Sum_probs=50.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh------hhHHHH---HHcCCCEE-EcCCCc-cccccCCCccEEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST------AKLDLL---RSLGADLA-IDYTKE-NIEDLPEKFDVVF  219 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~------~~~~~~---~~~g~~~v-~~~~~~-~~~~~~~~~d~vi  219 (255)
                      .++|+|+||+|.+|...+..+... |.+|+++++++      ++.+.+   +..+...+ .|..+. .+.+..+++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi   82 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSF-SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI   82 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhC-CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence            357999999999999999888874 89999999875      344333   23455433 233322 2333356899999


Q ss_pred             ECCCCc
Q 025278          220 DAVGKM  225 (255)
Q Consensus       220 d~~G~~  225 (255)
                      .++|..
T Consensus        83 ~~a~~~   88 (321)
T 3c1o_A           83 SALPFP   88 (321)
T ss_dssp             ECCCGG
T ss_pred             ECCCcc
Confidence            999853

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.40  E-value=0.005  Score=51.84  Aligned_cols=68  Identities=15%  Similarity=0.273  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++.++.+.++++|...+      +..+.....|+|+.++...
T Consensus       154 ~g~~vgIIG-~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~------~l~e~l~~aDvVi~~vp~~  221 (330)
T 2gcg_A          154 TQSTVGIIG-LGRIGQAIARRLKPF-GVQRFLYTGRQPRPEEAAEFQAEFV------STPELAAQSDFIVVACSLT  221 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGG-TCCEEEEESSSCCHHHHHTTTCEEC------CHHHHHHHCSEEEECCCCC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHC-CCEEEEECCCCcchhHHHhcCceeC------CHHHHHhhCCEEEEeCCCC
Confidence            478999999 899999999999985 9999999988777666666665321      2223334679999988754

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.39  E-value=0.008  Score=50.59  Aligned_cols=73  Identities=18%  Similarity=0.294  Sum_probs=50.1

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh----hhHHHH---HHcCCCEE-EcCCCc-cccccCC--CccEEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST----AKLDLL---RSLGADLA-IDYTKE-NIEDLPE--KFDVVF  219 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~----~~~~~~---~~~g~~~v-~~~~~~-~~~~~~~--~~d~vi  219 (255)
                      .++|+|+||+|.+|...+..+... |.+|+++++++    ++.+.+   +..+...+ .|..+. .+.+..+  ++|+||
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   88 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDA-HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV   88 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence            468999999999999999888874 89999999876    455433   33455433 222221 1222334  899999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .++|.
T Consensus        89 ~~a~~   93 (346)
T 3i6i_A           89 STVGG   93 (346)
T ss_dssp             ECCCG
T ss_pred             ECCch
Confidence            99985

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.39  E-value=0.0095  Score=53.22  Aligned_cols=66  Identities=18%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      +++|||+||+|.+|...+..+... |.+|+++++++.+.+       ....|..+ ...+..+++|+||.++|..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~-G~~V~~l~R~~~~~~-------~v~~d~~~-~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTG-GHEVIQLVRKEPKPG-------KRFWDPLN-PASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESSSCCTT-------CEECCTTS-CCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCcc-------ceeecccc-hhHHhcCCCCEEEECCCCc
Confidence            679999999999999999888874 999999999876532       12222222 2233456899999998843

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.38  E-value=0.0087  Score=48.97  Aligned_cols=70  Identities=27%  Similarity=0.331  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      .+++++|+| +|++|.+.+..+... |.++++.+++.++.+.+ +++|.. +.+    +..+..+.+|+||.|++...
T Consensus       128 ~~~~v~iiG-aG~~g~aia~~L~~~-g~~V~v~~r~~~~~~~l~~~~g~~-~~~----~~~~~~~~aDiVi~atp~~~  198 (275)
T 2hk9_A          128 KEKSILVLG-AGGASRAVIYALVKE-GAKVFLWNRTKEKAIKLAQKFPLE-VVN----SPEEVIDKVQVIVNTTSVGL  198 (275)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHH-TCEEEEECSSHHHHHHHTTTSCEE-ECS----CGGGTGGGCSEEEECSSTTS
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHcCCe-eeh----hHHhhhcCCCEEEEeCCCCC
Confidence            568999999 899999998888875 77888999998886655 455632 221    23333457899999998543

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.37  E-value=0.012  Score=49.26  Aligned_cols=74  Identities=15%  Similarity=0.198  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHH---HHHHcCC---C-EEE--cCCC-ccccccCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLD---LLRSLGA---D-LAI--DYTK-ENIEDLPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~---~~~~~g~---~-~v~--~~~~-~~~~~~~~~~d~vi  219 (255)
                      .+++|||+||+|.+|...+..+.. .|.+|++++++.++.+   .+.++..   . .++  |-.+ ..+.+..+++|+||
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   82 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLE-RGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVF   82 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHH-CCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence            467899999999999998887777 4999998888766432   2222211   1 122  2222 22333345899999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .+++.
T Consensus        83 h~A~~   87 (337)
T 2c29_D           83 HVATP   87 (337)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            98873

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.36  E-value=0.0069  Score=48.89  Aligned_cols=73  Identities=19%  Similarity=0.315  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-hhHHHHHH----cCCC-EEE--cCCCcc-cccc-------CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLDLLRS----LGAD-LAI--DYTKEN-IEDL-------PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-~~~~~~~~----~g~~-~v~--~~~~~~-~~~~-------~~  213 (255)
                      .+++++|+||+|++|...++.+... |++|+++++++ ++.+.+++    .+.. ..+  |..+.+ ..+.       .+
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAK-GYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHC-CCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4589999999999999988877774 99999986654 44444432    2222 222  222221 1111       13


Q ss_pred             CccEEEECCC
Q 025278          214 KFDVVFDAVG  223 (255)
Q Consensus       214 ~~d~vid~~G  223 (255)
                      ++|++|+++|
T Consensus        85 ~id~lv~~Ag   94 (264)
T 3i4f_A           85 KIDFLINNAG   94 (264)
T ss_dssp             CCCEEECCCC
T ss_pred             CCCEEEECCc
Confidence            7999999999

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.34  E-value=0.019  Score=46.85  Aligned_cols=96  Identities=23%  Similarity=0.291  Sum_probs=59.6

Q ss_pred             cchhHHHHHHHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc
Q 025278          132 LPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRSLGADLAIDYTKENIE  209 (255)
Q Consensus       132 l~~~~~ta~~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  209 (255)
                      +|++...+...++... --.|++++|.|++.-+|..+++++...+ +++|.+..+..                   .+..
T Consensus       138 ~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t-------------------~~L~  198 (281)
T 2c2x_A          138 LPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT-------------------RDLP  198 (281)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC-------------------SCHH
T ss_pred             CCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch-------------------hHHH
Confidence            4555444444554444 3578999999955567999999988743 68888775433                   2333


Q ss_pred             ccCCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          210 DLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       210 ~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +..+.+|+||-++|.+..  .-..+.+ ++..++-+|...
T Consensus       199 ~~~~~ADIVI~Avg~p~~--I~~~~vk-~GavVIDVgi~r  235 (281)
T 2c2x_A          199 ALTRQADIVVAAVGVAHL--LTADMVR-PGAAVIDVGVSR  235 (281)
T ss_dssp             HHHTTCSEEEECSCCTTC--BCGGGSC-TTCEEEECCEEE
T ss_pred             HHHhhCCEEEECCCCCcc--cCHHHcC-CCcEEEEccCCC
Confidence            334567888888776653  2244444 555666666553

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.33  E-value=0.0057  Score=51.12  Aligned_cols=74  Identities=27%  Similarity=0.320  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH--HHHHHcCC--C-EEE--cCCCc-cccccCC--CccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL--DLLRSLGA--D-LAI--DYTKE-NIEDLPE--KFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~--~~~~~~g~--~-~v~--~~~~~-~~~~~~~--~~d~vi  219 (255)
                      .+++|||+||+|.+|...++.+... |.+|+++++++++.  +.+++++.  . ..+  |..+. .+.+..+  ++|+||
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEK-GYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            3678999999999999988888774 89999999876543  23344421  1 122  21111 1111222  469999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .++|.
T Consensus        81 h~A~~   85 (345)
T 2z1m_A           81 NLAAQ   85 (345)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99984

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.32  E-value=0.021  Score=47.87  Aligned_cols=103  Identities=18%  Similarity=0.147  Sum_probs=65.0

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHHHc----C------------CC-EEEcC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLRSL----G------------AD-LAIDY  203 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~~~----g------------~~-~v~~~  203 (255)
                      .+....+.+|++||-.| +|. |..+..+++..+. .++++++.+++..+.+++.    |            .. .++..
T Consensus        97 ~l~~l~~~~g~~VLDiG-~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~  174 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAG-SGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  174 (336)
T ss_dssp             HHHHHTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HHHhcCCCCCCEEEEeC-CCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence            34555788999999999 666 8888888887522 7899999999888877542    1            11 12222


Q ss_pred             CCcccc-cc-CCCccEEEECCCCcc-ceeeeeeccccCCceEEEEee
Q 025278          204 TKENIE-DL-PEKFDVVFDAVGKMC-ISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       204 ~~~~~~-~~-~~~~d~vid~~G~~~-~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      +..+.. .. .+.+|+|+-....+. ....+.+.++ ++|+++.+..
T Consensus       175 d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~  220 (336)
T 2b25_A          175 DISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLK-HGGVCAVYVV  220 (336)
T ss_dssp             CTTCCC-------EEEEEECSSSTTTTHHHHGGGEE-EEEEEEEEES
T ss_pred             ChHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcC-CCcEEEEEeC
Confidence            222111 11 235999996555443 3444567777 7899987653

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.32  E-value=0.006  Score=51.72  Aligned_cols=98  Identities=20%  Similarity=0.199  Sum_probs=60.3

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH--HHHHHc-CCCEE-Ec-CCCc-cccccCCCccEEEECCCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL--DLLRSL-GADLA-ID-YTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~--~~~~~~-g~~~v-~~-~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      +++|+|+||+|.+|...+..+.. .|.+|+++++++++.  +.+.+. +...+ .| ..+. .+.+..+++|+||.+++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            56899999999999999888877 489999999887765  333332 33222 22 2222 233334689999987764


Q ss_pred             cc-----ceeeeeeccccCC--ceEEEEeecc
Q 025278          225 MC-----ISIVYQKCDKFQE--KSLINFGLFR  249 (255)
Q Consensus       225 ~~-----~~~~~~~~~~~~~--G~~v~~G~~~  249 (255)
                      ..     ........++..+  ++++.++...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            31     1111222222122  5899888754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.32  E-value=0.01  Score=48.90  Aligned_cols=74  Identities=23%  Similarity=0.408  Sum_probs=49.8

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh------hhHHHHH---HcCCCEE-EcCCCc-cccccCCCccEEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST------AKLDLLR---SLGADLA-IDYTKE-NIEDLPEKFDVVF  219 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~------~~~~~~~---~~g~~~v-~~~~~~-~~~~~~~~~d~vi  219 (255)
                      .++|+|+||+|.+|...+..+... |.+|++++|+.      ++.+.++   ..|...+ .|..+. .+.+..+++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   82 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI   82 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEE
Confidence            467999999999999999888874 89999998863      3443333   3454332 222221 2223345899999


Q ss_pred             ECCCCc
Q 025278          220 DAVGKM  225 (255)
Q Consensus       220 d~~G~~  225 (255)
                      .++|..
T Consensus        83 ~~a~~~   88 (308)
T 1qyc_A           83 STVGSL   88 (308)
T ss_dssp             ECCCGG
T ss_pred             ECCcch
Confidence            999853

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.31  E-value=0.0088  Score=54.61  Aligned_cols=74  Identities=19%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh---------hhHHH----HHHcCCCEEEcCCCcc-ccc-----
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST---------AKLDL----LRSLGADLAIDYTKEN-IED-----  210 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~---------~~~~~----~~~~g~~~v~~~~~~~-~~~-----  210 (255)
                      .|++++|+||++++|.+.++.+.. .|++|++.+++.         ++.+.    +++.|...+.|..+.. ...     
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~-~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~   85 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAK-LGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETA   85 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-cCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence            578999999999999998888777 499999987654         33332    2334544455554432 111     


Q ss_pred             --cCCCccEEEECCCC
Q 025278          211 --LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 --~~~~~d~vid~~G~  224 (255)
                        ..+.+|++|++.|-
T Consensus        86 ~~~~G~iDiLVnNAGi  101 (604)
T 2et6_A           86 VKNFGTVHVIINNAGI  101 (604)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence              12479999999993

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.30  E-value=0.0026  Score=54.40  Aligned_cols=74  Identities=18%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      .+++|||+||+|.+|...++.+... |.+|+++++++++.......+...+ .|..+. .+.+..+++|+||.++|.
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHE-GHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            3578999999999999998888774 8999999987654332222233222 222221 122334589999999884

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.30  E-value=0.007  Score=50.62  Aligned_cols=75  Identities=16%  Similarity=0.138  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH----HHH-cCC-CEEEcCCCcc---ccccC--CCccEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL----LRS-LGA-DLAIDYTKEN---IEDLP--EKFDVV  218 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~----~~~-~g~-~~v~~~~~~~---~~~~~--~~~d~v  218 (255)
                      .+++|||+||+|.+|...++.+... |.+|++++++.++...    +.+ .+. ...+..+-.+   +.+..  .++|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   82 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAH-GYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA   82 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHC-CCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence            4679999999999999998888874 9999999886544322    211 121 1223222111   12222  279999


Q ss_pred             EECCCCc
Q 025278          219 FDAVGKM  225 (255)
Q Consensus       219 id~~G~~  225 (255)
                      |+++|..
T Consensus        83 ih~A~~~   89 (341)
T 3enk_A           83 IHFAALK   89 (341)
T ss_dssp             EECCCCC
T ss_pred             EECcccc
Confidence            9999843

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.29  E-value=0.0025  Score=50.24  Aligned_cols=62  Identities=21%  Similarity=0.328  Sum_probs=43.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc-cc---ccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IE---DLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~---~~~~~~d~vid~~G~~  225 (255)
                      .+++++|+||++++|...++.+.. .|++|++++++++             .|-.+.+ ..   +..+++|++|++.|..
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r~~~-------------~D~~~~~~v~~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLES-EHTIVHVASRQTG-------------LDISDEKSVYHYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCS-TTEEEEEESGGGT-------------CCTTCHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEecCCcc-------------cCCCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence            468899999999999998888877 4999999887654             1111111 11   1114689999988843

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.28  E-value=0.02  Score=47.23  Aligned_cols=57  Identities=28%  Similarity=0.254  Sum_probs=40.4

Q ss_pred             cchhHHHHHHHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH
Q 025278          132 LPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL  189 (255)
Q Consensus       132 l~~~~~ta~~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~  189 (255)
                      +||+...+...++... --.|++++|+|.++.+|..+++++... +++|.+..+....+
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~~~~T~~l  202 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKE-NATVTIVHSGTSTE  202 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTSCHH
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCCCCc
Confidence            4555444555555433 358899999996666899999999985 99988887644433

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.27  E-value=0.013  Score=47.45  Aligned_cols=74  Identities=16%  Similarity=0.197  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-cChhhHHHH----HHcCCC-EEE--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLL----RSLGAD-LAI--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~~~~~~~~~----~~~g~~-~v~--~~~~~~-~~~-------~~~  213 (255)
                      .+++++|+||+|++|...++.+... |++|++.. ++.++.+..    ++.+.. .++  |-.+.+ ..+       ..+
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~-G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAAD-GFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHG  103 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999988887774 99997754 555554432    233332 222  222211 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|+++|.
T Consensus       104 ~id~li~nAg~  114 (267)
T 4iiu_A          104 AWYGVVSNAGI  114 (267)
T ss_dssp             CCSEEEECCCC
T ss_pred             CccEEEECCCC
Confidence            79999999984

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.26  E-value=0.0081  Score=50.66  Aligned_cols=87  Identities=26%  Similarity=0.303  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++.++ +.++++|...  .    +..+.....|+|+.++.......
T Consensus       149 ~g~~vgIIG-~G~iG~~iA~~l~~~-G~~V~~~d~~~~~-~~~~~~g~~~--~----~l~~~l~~aDvVil~vp~~~~t~  219 (334)
T 2dbq_A          149 YGKTIGIIG-LGRIGQAIAKRAKGF-NMRILYYSRTRKE-EVERELNAEF--K----PLEDLLRESDFVVLAVPLTRETY  219 (334)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCCH-HHHHHHCCEE--C----CHHHHHHHCSEEEECCCCCTTTT
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhC-CCEEEEECCCcch-hhHhhcCccc--C----CHHHHHhhCCEEEECCCCChHHH
Confidence            568999999 999999999999985 9999999998877 6666677532  1    22333346799999988554221


Q ss_pred             e-----eeeccccCCceEEEEe
Q 025278          230 V-----YQKCDKFQEKSLINFG  246 (255)
Q Consensus       230 ~-----~~~~~~~~~G~~v~~G  246 (255)
                      .     ....++ ++..++.++
T Consensus       220 ~~i~~~~~~~mk-~~ailIn~s  240 (334)
T 2dbq_A          220 HLINEERLKLMK-KTAILINIA  240 (334)
T ss_dssp             TCBCHHHHHHSC-TTCEEEECS
T ss_pred             HhhCHHHHhcCC-CCcEEEECC
Confidence            1     123343 455666655

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.25  E-value=0.0026  Score=51.81  Aligned_cols=71  Identities=27%  Similarity=0.363  Sum_probs=46.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc-cc-------ccCCCccEEEE
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IE-------DLPEKFDVVFD  220 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~-------~~~~~~d~vid  220 (255)
                      -.|++++|+||+|++|.+.++.+... |++|++++++.++.+....+    ..|-.+.. ..       +..+++|++|+
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~----~~Dv~~~~~~~~~~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAA-GARVAVADRAVAGIAADLHL----PGDLREAAYADGLPGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEECSSCCTTSCCSEEC----CCCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHhhhcc----CcCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            35789999999999999988877774 99999999876654321111    11111111 10       11247999999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      ++|.
T Consensus       101 nAg~  104 (266)
T 3uxy_A          101 NAGV  104 (266)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.25  E-value=0.0036  Score=52.40  Aligned_cols=76  Identities=20%  Similarity=0.204  Sum_probs=48.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHH-HHHHcCCCEEE--cCCCc-cccccCC--CccEEEECC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLD-LLRSLGADLAI--DYTKE-NIEDLPE--KFDVVFDAV  222 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~-~~~~~g~~~v~--~~~~~-~~~~~~~--~~d~vid~~  222 (255)
                      ..+++|||+||+|.+|...+..+... |.+|++++++..+.. .++++..-.++  |..+. .+.+..+  ++|+||.++
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A   96 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQ-GHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSA   96 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGG-TCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECC
Confidence            45689999999999999999888874 899999998654321 11222111222  22221 1222334  899999999


Q ss_pred             CCc
Q 025278          223 GKM  225 (255)
Q Consensus       223 G~~  225 (255)
                      |..
T Consensus        97 ~~~   99 (330)
T 2pzm_A           97 AAY   99 (330)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            843

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.22  E-value=0.04  Score=45.95  Aligned_cols=95  Identities=14%  Similarity=0.113  Sum_probs=61.8

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHHH----cCCCEEEcCCCccccccCCCccEEEECC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLRS----LGADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      .+..++++|+| +|.+|...+..++..++ .++.+.+++ ...+++++    +|.....-    +..+...+.|+|+.|+
T Consensus       118 ~~~~~~v~iIG-aG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~----~~~eav~~aDIVi~aT  191 (313)
T 3hdj_A          118 RPRSSVLGLFG-AGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA----APADIAAQADIVVTAT  191 (313)
T ss_dssp             CTTCCEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC----CHHHHHHHCSEEEECC
T ss_pred             cCCCcEEEEEC-ccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe----CHHHHHhhCCEEEEcc
Confidence            35678999999 99999998877766434 567778888 44444443    46543221    2333345789999999


Q ss_pred             CCccceeeeeeccccCCceEEEEeeccC
Q 025278          223 GKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       223 G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+..... -...++ ++-.++.+|....
T Consensus       192 ~s~~pvl-~~~~l~-~G~~V~~vGs~~p  217 (313)
T 3hdj_A          192 RSTTPLF-AGQALR-AGAFVGAIGSSLP  217 (313)
T ss_dssp             CCSSCSS-CGGGCC-TTCEEEECCCSST
T ss_pred             CCCCccc-CHHHcC-CCcEEEECCCCCC
Confidence            8653222 234455 6667788887654

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.22  E-value=0.0082  Score=50.10  Aligned_cols=72  Identities=18%  Similarity=0.239  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecC---hhhHHHH-HHc----CCC-EEEcCCCc-cccccCCCccEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSS---TAKLDLL-RSL----GAD-LAIDYTKE-NIEDLPEKFDVV  218 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~---~~~~~~~-~~~----g~~-~v~~~~~~-~~~~~~~~~d~v  218 (255)
                      .+++++|+| +|++|.+++..+... |+ +++++.|+   .+|.+.+ +++    +.. .+++..+. ...+....+|+|
T Consensus       147 ~gk~~lVlG-AGGaaraia~~L~~~-G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI  224 (312)
T 3t4e_A          147 RGKTMVLLG-AGGAATAIGAQAAIE-GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL  224 (312)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHc-CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence            578999999 799999988888875 76 78888998   5555543 233    222 22332221 011223468999


Q ss_pred             EECCC
Q 025278          219 FDAVG  223 (255)
Q Consensus       219 id~~G  223 (255)
                      |+|++
T Consensus       225 INaTp  229 (312)
T 3t4e_A          225 TNGTK  229 (312)
T ss_dssp             EECSS
T ss_pred             EECCc
Confidence            99987

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.22  E-value=0.0044  Score=51.88  Aligned_cols=73  Identities=18%  Similarity=0.102  Sum_probs=47.7

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCCEE-EcCCC-c-cccccCCCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADLA-IDYTK-E-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~v-~~~~~-~-~~~~~~~~~d~vid~~G~  224 (255)
                      ++|||+||+|.+|...++.+...+|.+|++++++.++.+.+.+ .+...+ .|..+ . .+.+..+++|+||.++|.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~~   77 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcccc
Confidence            3799999999999998888776337899999998776543221 122221 12222 1 122233478999999884

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=96.22  E-value=0.011  Score=47.72  Aligned_cols=74  Identities=19%  Similarity=0.262  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecChhhH--HHH----HHcCCCEE-E--cCCCcc-cc-------c
Q 025278          150 AGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSSTAKL--DLL----RSLGADLA-I--DYTKEN-IE-------D  210 (255)
Q Consensus       150 ~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~~~~--~~~----~~~g~~~v-~--~~~~~~-~~-------~  210 (255)
                      .+++++|+||+  +++|...+..+.. .|++|++++++.++.  +.+    ++.+.... +  |-.+.. ..       +
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~-~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAE-MGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVA   97 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHH-TSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHH-CCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence            57899999998  8999998887777 499999998765432  222    23353322 1  222211 11       1


Q ss_pred             cCCCccEEEECCCC
Q 025278          211 LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 ~~~~~d~vid~~G~  224 (255)
                      ..+.+|++|+++|.
T Consensus        98 ~~g~id~li~nAg~  111 (267)
T 3gdg_A           98 DFGQIDAFIANAGA  111 (267)
T ss_dssp             HTSCCSEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence            13478999999983

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.20  E-value=0.0095  Score=49.05  Aligned_cols=71  Identities=17%  Similarity=0.319  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCC----CE--EEcCCCccccccCCCccEEEECC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGA----DL--AIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~----~~--v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      .+++++|+| +|++|.+++..+... | +|+++.++.++.+.+ ++++.    ..  .++..  ++.+..+++|++|+++
T Consensus       127 ~~k~vlV~G-aGgiG~aia~~L~~~-G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~--~~~~~~~~~DilVn~a  201 (287)
T 1nvt_A          127 KDKNIVIYG-AGGAARAVAFELAKD-N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFS--GLDVDLDGVDIIINAT  201 (287)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHTSS-S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEE--CTTCCCTTCCEEEECS
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHC-C-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEe--eHHHhhCCCCEEEECC
Confidence            578999999 579999988888775 7 999999998876554 33321    00  01111  1123346799999999


Q ss_pred             CCc
Q 025278          223 GKM  225 (255)
Q Consensus       223 G~~  225 (255)
                      |..
T Consensus       202 g~~  204 (287)
T 1nvt_A          202 PIG  204 (287)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            844

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=96.20  E-value=0.008  Score=53.18  Aligned_cols=42  Identities=10%  Similarity=0.162  Sum_probs=34.0

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEecChhhH
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVF--GASKVAATSSTAKL  189 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~--g~~vi~~~~~~~~~  189 (255)
                      ...+++|||+||+|.+|...+..+....  |.+|+++++++++.
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~  113 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDE  113 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcH
Confidence            4568899999999999999887776633  78999999876644

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=96.19  E-value=0.013  Score=48.51  Aligned_cols=73  Identities=18%  Similarity=0.255  Sum_probs=45.6

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-Chhh---HHHHHHcCC---C-EEE--cCCC-ccccccCCCccEEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAK---LDLLRSLGA---D-LAI--DYTK-ENIEDLPEKFDVVF  219 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~---~~~~~~~g~---~-~v~--~~~~-~~~~~~~~~~d~vi  219 (255)
                      |++|||+||+|.+|...+..+.. .|.+|+++++ ++++   .+.+.++..   . .++  |..+ ..+.+..+++|+||
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   79 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLE-NGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF   79 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHH-CCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence            57899999999999998888777 4899998887 5432   222222210   0 122  2222 22333345899999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .+++.
T Consensus        80 h~A~~   84 (322)
T 2p4h_X           80 HTASP   84 (322)
T ss_dssp             ECCCC
T ss_pred             EcCCc
Confidence            99863

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.17  E-value=0.0059  Score=53.05  Aligned_cols=83  Identities=19%  Similarity=0.344  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE-cCCCccc-ccc-CCCccEEEECCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI-DYTKENI-EDL-PEKFDVVFDAVGKMC  226 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~-~~~~~~~-~~~-~~~~d~vid~~G~~~  226 (255)
                      .+++|+|.| .|.+|..+++.++.. |..+++++.++++.+.+++.|...++ |..+.+. ... .+.+|+||-+++...
T Consensus         3 ~~~~viIiG-~Gr~G~~va~~L~~~-g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~   80 (413)
T 3l9w_A            3 HGMRVIIAG-FGRFGQITGRLLLSS-GVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQ   80 (413)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChH
Confidence            346799999 899999999999984 99999999999999999999876443 2222221 122 457999999999765


Q ss_pred             ceeeeeec
Q 025278          227 ISIVYQKC  234 (255)
Q Consensus       227 ~~~~~~~~  234 (255)
                      ....+...
T Consensus        81 ~n~~i~~~   88 (413)
T 3l9w_A           81 TNLQLTEM   88 (413)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444333

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.16  E-value=0.019  Score=48.31  Aligned_cols=74  Identities=18%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh----hHHHHH-Hc------CCCEE-EcCCCc-cccccCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA----KLDLLR-SL------GADLA-IDYTKE-NIEDLPEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~----~~~~~~-~~------g~~~v-~~~~~~-~~~~~~~~~d  216 (255)
                      .+++|||+||+|.+|...+..+... |.+|+++++++.    +++.+. .+      +...+ .|..+. .+.+..+++|
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  104 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD  104 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCC
Confidence            3578999999999999998888874 899999988653    333222 11      22211 122221 1223345899


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      +||.++|.
T Consensus       105 ~vih~A~~  112 (352)
T 1sb8_A          105 YVLHQAAL  112 (352)
T ss_dssp             EEEECCSC
T ss_pred             EEEECCcc
Confidence            99999984

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.15  E-value=0.017  Score=47.31  Aligned_cols=95  Identities=22%  Similarity=0.202  Sum_probs=58.0

Q ss_pred             ccchhHHHHHHHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc
Q 025278          131 SLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE  209 (255)
Q Consensus       131 ~l~~~~~ta~~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  209 (255)
                      .+|++.......++... --.|++++|+|++..+|.-+++++... +++|.+..+..+.+                   .
T Consensus       138 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~hs~t~~L-------------------~  197 (288)
T 1b0a_A          138 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLA-GCTTTVTHRFTKNL-------------------R  197 (288)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTT-TCEEEEECSSCSCH-------------------H
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHC-CCeEEEEeCCchhH-------------------H
Confidence            34555444455555443 357899999996556899999999985 89998886544332                   2


Q ss_pred             ccCCCccEEEECCCCccceeeeeeccccCCceEEEEeec
Q 025278          210 DLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       210 ~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      +..+.+|+||-++|.+..  .-..+++ ++..++-+|..
T Consensus       198 ~~~~~ADIVI~Avg~p~l--I~~~~vk-~GavVIDVgi~  233 (288)
T 1b0a_A          198 HHVENADLLIVAVGKPGF--IPGDWIK-EGAIVIDVGIN  233 (288)
T ss_dssp             HHHHHCSEEEECSCCTTC--BCTTTSC-TTCEEEECCCE
T ss_pred             HHhccCCEEEECCCCcCc--CCHHHcC-CCcEEEEccCC
Confidence            222345666666665542  2233343 45555555554

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=96.13  E-value=0.011  Score=51.39  Aligned_cols=76  Identities=16%  Similarity=0.249  Sum_probs=49.4

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH---HHHH----H-----------cCCCEE-EcCCC-cc
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL---DLLR----S-----------LGADLA-IDYTK-EN  207 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~---~~~~----~-----------~g~~~v-~~~~~-~~  207 (255)
                      ..++++|||+||+|.+|...+..+.. .|.+|+++++++++.   +.++    +           -+...+ .|..+ +.
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQG-YSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTT-TEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHc-CCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            34567999999999999998888766 489999999887632   1111    1           122111 23322 22


Q ss_pred             ccccCCCccEEEECCCCc
Q 025278          208 IEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       208 ~~~~~~~~d~vid~~G~~  225 (255)
                      +. ...++|+||+++|..
T Consensus       145 l~-~~~~~d~Vih~A~~~  161 (427)
T 4f6c_A          145 VV-LPENMDTIIHAGART  161 (427)
T ss_dssp             CC-CSSCCSEEEECCCCC
T ss_pred             CC-CcCCCCEEEECCccc
Confidence            33 446899999999853

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.12  E-value=0.012  Score=46.56  Aligned_cols=36  Identities=31%  Similarity=0.349  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      +++++|+||+|++|...++.+... |++|++++++++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~   37 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKAR-GYRVVVLDLRRE   37 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEccCcc
Confidence            578999999999999988877774 999999998765

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.11  E-value=0.0066  Score=50.66  Aligned_cols=78  Identities=18%  Similarity=0.135  Sum_probs=46.6

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH--HHHHHc----CCCEE-EcCCCc-cccccCC--Cc
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL--DLLRSL----GADLA-IDYTKE-NIEDLPE--KF  215 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~--~~~~~~----g~~~v-~~~~~~-~~~~~~~--~~  215 (255)
                      ..-.++.+|||+||+|.+|...++.+... |.+|+++++++++.  ..++.+    +...+ .|..+. .+.+..+  ++
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   87 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQP   87 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCC
Confidence            34568899999999999999999888874 89999999876541  223332    12111 122221 1122222  47


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |+||.++|.
T Consensus        88 d~Vih~A~~   96 (335)
T 1rpn_A           88 QEVYNLAAQ   96 (335)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECccc
Confidence            999999984

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.11  E-value=0.02  Score=47.54  Aligned_cols=103  Identities=11%  Similarity=0.033  Sum_probs=66.4

Q ss_pred             Hhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCCCc
Q 025278          144 ERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPEKF  215 (255)
Q Consensus       144 ~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~  215 (255)
                      +... ++++++||-+| +| .|..+..+++.. +.++++++.+++.++.+++    .|..   .++..+-.+.....+.+
T Consensus       110 ~~l~~~~~~~~vLDiG-cG-~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  186 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAG-CG-RGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAV  186 (312)
T ss_dssp             TTSCCCCTTCEEEEES-CT-TSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred             HHhccCCCCCEEEEec-CC-CCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCE
Confidence            3444 78899999998 55 488888899875 8999999999998887754    3422   22222222221113579


Q ss_pred             cEEEECCC-----CccceeeeeeccccCCceEEEEeeccC
Q 025278          216 DVVFDAVG-----KMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       216 d~vid~~G-----~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      |+|+..-.     .......+.+.++ ++|++++......
T Consensus       187 D~V~~~~~l~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~  225 (312)
T 3vc1_A          187 TASWNNESTMYVDLHDLFSEHSRFLK-VGGRYVTITGCWN  225 (312)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHEE-EEEEEEEEEEEEC
T ss_pred             eEEEECCchhhCCHHHHHHHHHHHcC-CCcEEEEEEcccc
Confidence            99986422     1223333455666 7899998775443

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.11  E-value=0.0037  Score=52.63  Aligned_cols=89  Identities=15%  Similarity=0.106  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++..+.+.++++|+...      ++.+.....|+|+-++.......
T Consensus       144 ~g~tvGIIG-~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~------~l~ell~~aDvV~l~~P~t~~t~  215 (330)
T 4e5n_A          144 DNATVGFLG-MGAIGLAMADRLQGW-GATLQYHEAKALDTQTEQRLGLRQV------ACSELFASSDFILLALPLNADTL  215 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHTTTS-CCEEEEECSSCCCHHHHHHHTEEEC------CHHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHC-CCEEEEECCCCCcHhHHHhcCceeC------CHHHHHhhCCEEEEcCCCCHHHH
Confidence            578999999 999999999999985 9999999998766666667775321      23333346788888877322111


Q ss_pred             -----eeeeccccCCceEEEEee
Q 025278          230 -----VYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       230 -----~~~~~~~~~~G~~v~~G~  247 (255)
                           ..+..++ ++..++.+|.
T Consensus       216 ~li~~~~l~~mk-~gailIN~ar  237 (330)
T 4e5n_A          216 HLVNAELLALVR-PGALLVNPCR  237 (330)
T ss_dssp             TCBCHHHHTTSC-TTEEEEECSC
T ss_pred             HHhCHHHHhhCC-CCcEEEECCC
Confidence                 1233344 5566666654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.11  E-value=0.013  Score=46.01  Aligned_cols=68  Identities=18%  Similarity=0.173  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      ...+|.|+| +|.+|...+..+... |.+|++.++++++.+.+.+.|....      +..+..++.|+||.|+...
T Consensus        27 ~~~~I~iiG-~G~~G~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~g~~~~------~~~~~~~~~DvVi~av~~~   94 (215)
T 2vns_A           27 EAPKVGILG-SGDFARSLATRLVGS-GFKVVVGSRNPKRTARLFPSAAQVT------FQEEAVSSPEVIFVAVFRE   94 (215)
T ss_dssp             --CCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHSBTTSEEE------EHHHHTTSCSEEEECSCGG
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcee------cHHHHHhCCCEEEECCChH
Confidence            346799999 999999988887774 8899999999988877655554321      2233345789999998854

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.09  E-value=0.012  Score=49.24  Aligned_cols=68  Identities=19%  Similarity=0.279  Sum_probs=52.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      ..+|.|+| +|.+|...++.+... |.+|++.++++++.+.+.+.|.... +    +..+..+..|+||-|+..+
T Consensus        31 ~~~I~iIG-~G~mG~~~a~~l~~~-G~~V~~~dr~~~~~~~l~~~g~~~~-~----~~~e~~~~aDvVi~~vp~~   98 (320)
T 4dll_A           31 ARKITFLG-TGSMGLPMARRLCEA-GYALQVWNRTPARAASLAALGATIH-E----QARAAARDADIVVSMLENG   98 (320)
T ss_dssp             CSEEEEEC-CTTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHTTTCEEE-S----SHHHHHTTCSEEEECCSSH
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHhC-CCeEEEEcCCHHHHHHHHHCCCEee-C----CHHHHHhcCCEEEEECCCH
Confidence            46899999 899999988888774 8999999999999988887776432 1    2233345689999988854

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.07  E-value=0.008  Score=50.69  Aligned_cols=73  Identities=16%  Similarity=0.214  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHc----CCCEEEcCCCcc---ccccCC--CccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSL----GADLAIDYTKEN---IEDLPE--KFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~----g~~~v~~~~~~~---~~~~~~--~~d~vi  219 (255)
                      .+++|||+||+|.+|...++.+... |.+|+++++++++...+ +.+    +. ..+..+-.+   +.+..+  .+|+||
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~~~~d~vi   85 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGM-QSEIGDIRDQNKLLESIREFQPEIVF   85 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCSSSSCHHHHTTTTTTS-EEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhC-CCeEEEEeCCCcccchhhHhhccCCce-EEEEccccCHHHHHHHHHhcCCCEEE
Confidence            4678999999999999998888874 89999999876554322 221    22 222222111   112222  489999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .++|.
T Consensus        86 h~A~~   90 (357)
T 1rkx_A           86 HMAAQ   90 (357)
T ss_dssp             ECCSC
T ss_pred             ECCCC
Confidence            99984

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.07  E-value=0.023  Score=46.37  Aligned_cols=69  Identities=14%  Similarity=0.169  Sum_probs=51.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCC--cEEEEecChhhHHHHHHcCCC-EEEcCCCccccccCC-CccEEEECCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGA--SKVAATSSTAKLDLLRSLGAD-LAIDYTKENIEDLPE-KFDVVFDAVGKMC  226 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~--~vi~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~-~~d~vid~~G~~~  226 (255)
                      .+|.|+| +|.+|...++.++.. |.  +|++.++++++.+.+++.|.. ...+    +..+..+ +.|+||.|+....
T Consensus         2 ~~I~iIG-~G~mG~~~a~~l~~~-g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~aDvVilavp~~~   74 (281)
T 2g5c_A            2 QNVLIVG-VGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDLGIIDEGTT----SIAKVEDFSPDFVMLSSPVRT   74 (281)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHTTSCSEEES----CGGGGGGTCCSEEEECSCHHH
T ss_pred             cEEEEEe-cCHHHHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHCCCcccccC----CHHHHhcCCCCEEEEcCCHHH
Confidence            3689999 999999998888874 76  899999999999888888864 2221    2223345 7899999988554

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.07  E-value=0.0093  Score=52.66  Aligned_cols=75  Identities=24%  Similarity=0.306  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCCE-EEcCCCc-cccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADL-AIDYTKE-NIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~-v~~~~~~-~~~~~~~~~d~vid~~G~~  225 (255)
                      .+++|+|+| +|++|..++..+...++.++++++++.++.+.+.+ .+... .++..+. ...+..+++|+||+|++..
T Consensus        22 ~~k~VlIiG-AGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~   99 (467)
T 2axq_A           22 MGKNVLLLG-SGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYT   99 (467)
T ss_dssp             -CEEEEEEC-CSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG
T ss_pred             CCCEEEEEC-ChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchh
Confidence            356899999 59999998888776446788899999888776543 34322 2333221 2223335799999999854

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=96.07  E-value=0.023  Score=49.39  Aligned_cols=80  Identities=16%  Similarity=0.225  Sum_probs=49.8

Q ss_pred             hcccCCCCEEEEEcCCchHHHH--HHHHHHHhcCCcEEEEecChhh---------------H-HHHHHcCCCE-EE--cC
Q 025278          145 RSAFSAGKSILVLGGAGGVGTM--VIQLAKHVFGASKVAATSSTAK---------------L-DLLRSLGADL-AI--DY  203 (255)
Q Consensus       145 ~~~~~~g~~VlI~ga~g~~G~~--a~~~a~~~~g~~vi~~~~~~~~---------------~-~~~~~~g~~~-v~--~~  203 (255)
                      +..+..|+++||+||++++|++  .+..... .|++|+++.++.++               . +.+++.|... .+  |-
T Consensus        54 ~~~~~~gK~aLVTGassGIG~A~aia~ala~-~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv  132 (418)
T 4eue_A           54 AIGFRGPKKVLIVGASSGFGLATRISVAFGG-PEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDA  132 (418)
T ss_dssp             SCCCCCCSEEEEESCSSHHHHHHHHHHHHSS-SCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             cCcCCCCCEEEEECCCcHHHHHHHHHHHHHh-CCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeC
Confidence            3446789999999999999998  4444433 38999998875322               1 2234556443 22  22


Q ss_pred             CCcc-cc-------ccCCCccEEEECCCCc
Q 025278          204 TKEN-IE-------DLPEKFDVVFDAVGKM  225 (255)
Q Consensus       204 ~~~~-~~-------~~~~~~d~vid~~G~~  225 (255)
                      .+.. ..       +..+.+|++++++|..
T Consensus       133 td~~~v~~~v~~i~~~~G~IDiLVnNAG~~  162 (418)
T 4eue_A          133 FSNETKDKVIKYIKDEFGKIDLFVYSLAAP  162 (418)
T ss_dssp             TCHHHHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCccc
Confidence            2211 11       1135799999998853

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=96.06  E-value=0.014  Score=52.26  Aligned_cols=70  Identities=30%  Similarity=0.446  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEEcCCCccccc-cCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAIDYTKENIED-LPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~-~~~~~d~vid~~G~  224 (255)
                      .+++++|+| +|++|.+++..+... |++|+++.++.++.+.+ ++++.. ++...  +..+ ....+|++|+++|.
T Consensus       363 ~~k~vlV~G-aGGig~aia~~L~~~-G~~V~i~~R~~~~a~~la~~~~~~-~~~~~--dl~~~~~~~~DilVN~agv  434 (523)
T 2o7s_A          363 ASKTVVVIG-AGGAGKALAYGAKEK-GAKVVIANRTYERALELAEAIGGK-ALSLT--DLDNYHPEDGMVLANTTSM  434 (523)
T ss_dssp             ---CEEEEC-CSHHHHHHHHHHHHH-CC-CEEEESSHHHHHHHHHHTTC--CEETT--TTTTC--CCSEEEEECSST
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHcCCc-eeeHH--HhhhccccCceEEEECCCC
Confidence            467899999 589999988888875 88999999998887655 456542 22222  1222 12358999999984

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.04  E-value=0.0028  Score=52.33  Aligned_cols=72  Identities=19%  Similarity=0.306  Sum_probs=47.3

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHh-cCCcEEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCC--CccEEEECCCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHV-FGASKVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPE--KFDVVFDAVGK  224 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~-~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~--~~d~vid~~G~  224 (255)
                      +++|||+||+|.+|...+..+... +|.+|+++++++.+.+...  +...+ .|..+. .+.+..+  ++|+||.++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   78 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVN--SGPFEVVNALDFNQIEHLVEVHKITDIYLMAAL   78 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHH--SSCEEECCTTCHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccC--CCceEEecCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            367999999999999988877763 2789999998766543222  23322 222221 1222223  79999999985

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.03  E-value=0.01  Score=45.68  Aligned_cols=59  Identities=27%  Similarity=0.480  Sum_probs=41.2

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc-cccc---CCCccEEEECCC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IEDL---PEKFDVVFDAVG  223 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~---~~~~d~vid~~G  223 (255)
                      +++|+||+|++|...++.+. . |.+|++++++++          ....|..+.. ..+.   .+++|++|.++|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~-g~~V~~~~r~~~----------~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-K-KAEVITAGRHSG----------DVTVDITNIDSIKKMYEQVGKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-T-TSEEEEEESSSS----------SEECCTTCHHHHHHHHHHHCCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-C-CCeEEEEecCcc----------ceeeecCCHHHHHHHHHHhCCCCEEEECCC
Confidence            79999999999999888887 5 999999988754          1222322211 1111   135899999988

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.01  E-value=0.013  Score=48.13  Aligned_cols=66  Identities=24%  Similarity=0.316  Sum_probs=46.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHH-HcCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLR-SLGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      -.+++++|+| +|++|.+++..+... |+ +++++.|+.+|.+.+. ++.   .+.+.  +..+ . .+|+||+|++
T Consensus       120 ~~~k~vlvlG-aGGaaraia~~L~~~-G~~~v~v~nRt~~ka~~La~~~~---~~~~~--~l~~-l-~~DivInaTp  187 (282)
T 3fbt_A          120 IKNNICVVLG-SGGAARAVLQYLKDN-FAKDIYVVTRNPEKTSEIYGEFK---VISYD--ELSN-L-KGDVIINCTP  187 (282)
T ss_dssp             CTTSEEEEEC-SSTTHHHHHHHHHHT-TCSEEEEEESCHHHHHHHCTTSE---EEEHH--HHTT-C-CCSEEEECSS
T ss_pred             ccCCEEEEEC-CcHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHhcC---cccHH--HHHh-c-cCCEEEECCc
Confidence            3588999999 799999998888885 76 8888899988876553 332   22221  1222 2 6899999885

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.01  E-value=0.029  Score=46.77  Aligned_cols=70  Identities=14%  Similarity=0.117  Sum_probs=53.2

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCC--cEEEEecChhhHHHHHHcCCC-EEEcCCCccccc-cCCCccEEEECCCCccc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGA--SKVAATSSTAKLDLLRSLGAD-LAIDYTKENIED-LPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~--~vi~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~-~~~~~d~vid~~G~~~~  227 (255)
                      .+|.|+| .|.+|...++.++.. |.  +|++.++++++.+.+++.|.. ...+    +..+ ...+.|+||.|+.....
T Consensus        34 ~kI~IIG-~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~----~~~~~~~~~aDvVilavp~~~~  107 (314)
T 3ggo_A           34 QNVLIVG-VGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDLGIIDEGTT----SIAKVEDFSPDFVMLSSPVRTF  107 (314)
T ss_dssp             SEEEEES-CSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHTTSCSEEES----CTTGGGGGCCSEEEECSCGGGH
T ss_pred             CEEEEEe-eCHHHHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHCCCcchhcC----CHHHHhhccCCEEEEeCCHHHH
Confidence            6899999 999999988888874 77  899999999999999888853 2222    1222 33568999988875543

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.01  E-value=0.0053  Score=51.57  Aligned_cols=35  Identities=11%  Similarity=0.162  Sum_probs=29.0

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      +++|+|+|++|++|...+..+.. .|++++.+.++.
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~-~G~~v~~v~r~~   36 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLAS-DPSQSFKVYATL   36 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHT-CTTCCEEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCceEEEEeec
Confidence            57899999999999998888877 488888776543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.99  E-value=0.0019  Score=53.08  Aligned_cols=68  Identities=18%  Similarity=0.283  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      .+++++|+| +|++|.+++..+... |+ +++++.|+.+|.+.+.+. . .....  ++..+....+|+||+|++
T Consensus       116 ~~k~vlvlG-aGg~g~aia~~L~~~-G~~~v~v~~R~~~~a~~la~~-~-~~~~~--~~~~~~~~~aDiVInaTp  184 (277)
T 3don_A          116 EDAYILILG-AGGASKGIANELYKI-VRPTLTVANRTMSRFNNWSLN-I-NKINL--SHAESHLDEFDIIINTTP  184 (277)
T ss_dssp             GGCCEEEEC-CSHHHHHHHHHHHTT-CCSCCEEECSCGGGGTTCCSC-C-EEECH--HHHHHTGGGCSEEEECCC
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHh-c-ccccH--hhHHHHhcCCCEEEECcc
Confidence            578999999 799999988888875 76 888999998876543221 1 11111  112222346788888876

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=95.99  E-value=0.025  Score=47.19  Aligned_cols=73  Identities=22%  Similarity=0.267  Sum_probs=47.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH---HHHHHc----CCCEE-EcCCC-ccccccCCCccEEEEC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL---DLLRSL----GADLA-IDYTK-ENIEDLPEKFDVVFDA  221 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~---~~~~~~----g~~~v-~~~~~-~~~~~~~~~~d~vid~  221 (255)
                      +++|||+||+|.+|...+..+.. .|.+|++++++.++.   ..+..+    +...+ .|-.+ ..+.+..+++|+||.+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~   87 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQ-KGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHV   87 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHH-TTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence            68999999999999998888877 499999888765532   222222    12111 12222 2233334589999998


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      ++.
T Consensus        88 A~~   90 (338)
T 2rh8_A           88 ATP   90 (338)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            873

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=95.98  E-value=0.023  Score=45.31  Aligned_cols=100  Identities=14%  Similarity=0.054  Sum_probs=65.6

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHHcC-----CCEEEcCCCcc---ccccC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRSLG-----ADLAIDYTKEN---IEDLP  212 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~~g-----~~~v~~~~~~~---~~~~~  212 (255)
                      +++...++||++||=+| +| .|..+..+|+..+ ..+|++++.+++.++.+++.-     ...+. .+..+   .....
T Consensus        69 gl~~l~ikpG~~VldlG-~G-~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~-~d~~~p~~~~~~~  145 (233)
T 4df3_A           69 GLIELPVKEGDRILYLG-IA-SGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPIL-GDARFPEKYRHLV  145 (233)
T ss_dssp             TCSCCCCCTTCEEEEET-CT-TSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEE-SCTTCGGGGTTTC
T ss_pred             chhhcCCCCCCEEEEec-Cc-CCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEE-EeccCcccccccc
Confidence            45677899999999999 44 4888888998863 368999999999888775432     22222 22221   12223


Q ss_pred             CCccEEEECCCCccc----eeeeeeccccCCceEEEE
Q 025278          213 EKFDVVFDAVGKMCI----SIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       213 ~~~d~vid~~G~~~~----~~~~~~~~~~~~G~~v~~  245 (255)
                      ..+|+||.....+..    ...+.+.++ ++|+++++
T Consensus       146 ~~vDvVf~d~~~~~~~~~~l~~~~r~LK-pGG~lvI~  181 (233)
T 4df3_A          146 EGVDGLYADVAQPEQAAIVVRNARFFLR-DGGYMLMA  181 (233)
T ss_dssp             CCEEEEEECCCCTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             ceEEEEEEeccCChhHHHHHHHHHHhcc-CCCEEEEE
Confidence            578999866554432    223345566 78998875

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.97  E-value=0.0068  Score=51.11  Aligned_cols=67  Identities=24%  Similarity=0.305  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++.++ +.++++|...  .    +..+.....|+|+.++...
T Consensus       145 ~g~~vgIIG-~G~iG~~vA~~l~~~-G~~V~~~d~~~~~-~~~~~~g~~~--~----~l~e~l~~aDiVil~vp~~  211 (333)
T 2d0i_A          145 YGKKVGILG-MGAIGKAIARRLIPF-GVKLYYWSRHRKV-NVEKELKARY--M----DIDELLEKSDIVILALPLT  211 (333)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGG-TCEEEEECSSCCH-HHHHHHTEEE--C----CHHHHHHHCSEEEECCCCC
T ss_pred             CcCEEEEEc-cCHHHHHHHHHHHHC-CCEEEEECCCcch-hhhhhcCcee--c----CHHHHHhhCCEEEEcCCCC
Confidence            578999999 999999999999985 9999999998776 5555666422  1    2223334678888888755

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.95  E-value=0.085  Score=43.87  Aligned_cols=95  Identities=11%  Similarity=0.087  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHH-HHcCC-CEEEcCCCccccccCCCccEEEECCCCc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLL-RSLGA-DLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~-~~~g~-~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      ....++.|+| +|.+|...+..+....+. ++.+.++++++.+.+ ++++. -.+.    .+..+..++.|+|+.|+...
T Consensus       133 ~~~~~igiIG-~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~----~~~~e~v~~aDiVi~atp~~  207 (312)
T 2i99_A          133 PSSEVLCILG-AGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVC----SSVQEAVAGADVIITVTLAT  207 (312)
T ss_dssp             TTCCEEEEEC-CSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEEC----SSHHHHHTTCSEEEECCCCS
T ss_pred             CCCcEEEEEC-CcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEe----CCHHHHHhcCCEEEEEeCCC
Confidence            4567899999 899999887776654365 788889998887765 45562 1121    12333345789999998753


Q ss_pred             cceeeeeeccccCCceEEEEeeccC
Q 025278          226 CISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       226 ~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ..... ...++ ++-.++.+|....
T Consensus       208 ~~v~~-~~~l~-~g~~vi~~g~~~p  230 (312)
T 2i99_A          208 EPILF-GEWVK-PGAHINAVGASRP  230 (312)
T ss_dssp             SCCBC-GGGSC-TTCEEEECCCCST
T ss_pred             CcccC-HHHcC-CCcEEEeCCCCCC
Confidence            22111 13443 4445555565543

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.95  E-value=0.0028  Score=51.32  Aligned_cols=66  Identities=17%  Similarity=0.358  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHH-HcCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLR-SLGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      .+ +++|+| +|++|.+++..+... |+ +++++.|+.+|.+.+. +++.   ...  .+..+...++|+||+|+.
T Consensus       108 ~~-~vliiG-aGg~a~ai~~~L~~~-G~~~I~v~nR~~~ka~~la~~~~~---~~~--~~~~~~~~~aDiVInatp  175 (253)
T 3u62_A          108 KE-PVVVVG-AGGAARAVIYALLQM-GVKDIWVVNRTIERAKALDFPVKI---FSL--DQLDEVVKKAKSLFNTTS  175 (253)
T ss_dssp             CS-SEEEEC-CSHHHHHHHHHHHHT-TCCCEEEEESCHHHHHTCCSSCEE---EEG--GGHHHHHHTCSEEEECSS
T ss_pred             CC-eEEEEC-cHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHccc---CCH--HHHHhhhcCCCEEEECCC
Confidence            45 899999 899999998888875 76 8999999988766543 3321   111  122222347899999886

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=95.95  E-value=0.029  Score=45.20  Aligned_cols=43  Identities=14%  Similarity=0.100  Sum_probs=35.6

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS  194 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~  194 (255)
                      ..++.+||..| +|. |..+..+|+.  |.+|+++|.+++-++.+++
T Consensus        66 ~~~~~~vLD~G-CG~-G~~~~~La~~--G~~V~gvD~S~~~i~~a~~  108 (252)
T 2gb4_A           66 GQSGLRVFFPL-CGK-AIEMKWFADR--GHTVVGVEISEIGIREFFA  108 (252)
T ss_dssp             TCCSCEEEETT-CTT-CTHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCeEEEeC-CCC-cHHHHHHHHC--CCeEEEEECCHHHHHHHHH
Confidence            45788999998 654 8888888875  8899999999998888853

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.95  E-value=0.022  Score=44.79  Aligned_cols=95  Identities=14%  Similarity=0.203  Sum_probs=64.9

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC-CEEEcCCC-cccccc-CCCccEEEECCCC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA-DLAIDYTK-ENIEDL-PEKFDVVFDAVGK  224 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~-~~v~~~~~-~~~~~~-~~~~d~vid~~G~  224 (255)
                      ++++.+||=+| +|. |..+..+++.  +.++++++.+++.++.+++... ..++..+- ...... .+.+|+|+.....
T Consensus        46 ~~~~~~vLDiG-cG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~~  121 (226)
T 3m33_A           46 LTPQTRVLEAG-CGH-GPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGP  121 (226)
T ss_dssp             CCTTCEEEEES-CTT-SHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEESCC
T ss_pred             CCCCCeEEEeC-CCC-CHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCCCH
Confidence            36789999998 554 7888888875  7899999999999988876532 22333222 111111 3579999987555


Q ss_pred             ccceeeeeeccccCCceEEEEee
Q 025278          225 MCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       225 ~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      ......+.+.++ ++|+++..+.
T Consensus       122 ~~~l~~~~~~Lk-pgG~l~~~~~  143 (226)
T 3m33_A          122 TSVILRLPELAA-PDAHFLYVGP  143 (226)
T ss_dssp             SGGGGGHHHHEE-EEEEEEEEES
T ss_pred             HHHHHHHHHHcC-CCcEEEEeCC
Confidence            555566667777 8899985543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.95  E-value=0.0049  Score=51.59  Aligned_cols=75  Identities=15%  Similarity=0.184  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH-HHHHHcCCCEEE--cCCCc-cccccCCC--ccEEEECCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL-DLLRSLGADLAI--DYTKE-NIEDLPEK--FDVVFDAVG  223 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~-~~~~~~g~~~v~--~~~~~-~~~~~~~~--~d~vid~~G  223 (255)
                      .+++|||+||+|.+|...+..+... |.+|++++++..+. +.++++.--.++  |..+. .+.+..++  +|+||+++|
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~   98 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLER-GDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAA   98 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECce
Confidence            4678999999999999998888774 89999999865432 112221111222  22221 12222234  999999998


Q ss_pred             Cc
Q 025278          224 KM  225 (255)
Q Consensus       224 ~~  225 (255)
                      ..
T Consensus        99 ~~  100 (333)
T 2q1w_A           99 SY  100 (333)
T ss_dssp             CC
T ss_pred             ec
Confidence            43

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.95  E-value=0.0081  Score=49.35  Aligned_cols=67  Identities=22%  Similarity=0.262  Sum_probs=50.0

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      .+|.|+| +|.+|...++.+... |.+|++.++++++.+.+.+.|....     .+..+..+..|+||-|+..+
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~~~~aDvvi~~vp~~   68 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVKA-GCSVTIWNRSPEKAEELAALGAERA-----ATPCEVVESCPVTFAMLADP   68 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSGGGGHHHHHTTCEEC-----SSHHHHHHHCSEEEECCSSH
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHC-CCeEEEEcCCHHHHHHHHHCCCeec-----CCHHHHHhcCCEEEEEcCCH
Confidence            5799999 899999988888774 8999999999999988887775321     12222233568888888743

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=95.92  E-value=0.015  Score=44.14  Aligned_cols=101  Identities=14%  Similarity=0.039  Sum_probs=63.0

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC--EEEcCCCcccccc-CCCcc
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDL-PEKFD  216 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~-~~~~d  216 (255)
                      ....++++++||=.| +|. |..+..+++.  +.+|+++|.+++.++.+++    .|.+  .++.....++... .+.+|
T Consensus        16 l~~~~~~~~~vLDiG-cG~-G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD   91 (185)
T 3mti_A           16 LAEVLDDESIVVDAT-MGN-GNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIR   91 (185)
T ss_dssp             HHTTCCTTCEEEESC-CTT-SHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEE
T ss_pred             HHHhCCCCCEEEEEc-CCC-CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcC
Confidence            345678899999888 554 8888888875  8899999999998877743    3432  2233222222212 34699


Q ss_pred             EEEECCCCcc---------------ceeeeeeccccCCceEEEEeecc
Q 025278          217 VVFDAVGKMC---------------ISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       217 ~vid~~G~~~---------------~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +|+-..+-..               ....+.+.++ ++|+++++-..+
T Consensus        92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~  138 (185)
T 3mti_A           92 AAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLE-VGGRLAIMIYYG  138 (185)
T ss_dssp             EEEEEEC-----------CHHHHHHHHHHHHHHEE-EEEEEEEEEC--
T ss_pred             EEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcC-CCcEEEEEEeCC
Confidence            9986533111               1133345566 789998876654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.88  E-value=0.037  Score=45.35  Aligned_cols=41  Identities=24%  Similarity=0.324  Sum_probs=35.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS  194 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~  194 (255)
                      ++|.|+| +|.+|...++.+... |.+|++.++++++++.+++
T Consensus         5 ~kV~VIG-aG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLG-TGVLGSQIAFQTAFH-GFAVTAYDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHH
Confidence            5899999 899999988888874 9999999999998776643

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.88  E-value=0.026  Score=47.20  Aligned_cols=74  Identities=22%  Similarity=0.339  Sum_probs=47.1

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh----------hhHHHHHH-cC--CCEE-EcCCCc-cccccCC--
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST----------AKLDLLRS-LG--ADLA-IDYTKE-NIEDLPE--  213 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~----------~~~~~~~~-~g--~~~v-~~~~~~-~~~~~~~--  213 (255)
                      +++|||+||+|.+|...+..+... |.+|++++++.          ++.+.+++ .+  ...+ .|..+. .+.+..+  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHT-TCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence            468999999999999988888774 89999998643          23333332 22  2222 222221 1222223  


Q ss_pred             CccEEEECCCCc
Q 025278          214 KFDVVFDAVGKM  225 (255)
Q Consensus       214 ~~d~vid~~G~~  225 (255)
                      ++|+||.++|..
T Consensus        81 ~~d~vih~A~~~   92 (348)
T 1ek6_A           81 SFMAVIHFAGLK   92 (348)
T ss_dssp             CEEEEEECCSCC
T ss_pred             CCCEEEECCCCc
Confidence            799999999843

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.87  E-value=0.022  Score=44.63  Aligned_cols=77  Identities=13%  Similarity=0.119  Sum_probs=55.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCcc---ccc-cCCCccEEEECCCCccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKEN---IED-LPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~---~~~-~~~~~d~vid~~G~~~~  227 (255)
                      +|+|.| .|.+|...++.+... |.+++++++++++.+.+. +.|... +..+..+   +.+ ..+++|++|-+++....
T Consensus         2 ~iiIiG-~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~l~~~~~~~~-i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~   78 (218)
T 3l4b_C            2 KVIIIG-GETTAYYLARSMLSR-KYGVVIINKDRELCEEFAKKLKATI-IHGDGSHKEILRDAEVSKNDVVVILTPRDEV   78 (218)
T ss_dssp             CEEEEC-CHHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHHSSSEE-EESCTTSHHHHHHHTCCTTCEEEECCSCHHH
T ss_pred             EEEEEC-CCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHHcCCeE-EEcCCCCHHHHHhcCcccCCEEEEecCCcHH
Confidence            589999 799999999988884 999999999999988764 566543 3333222   222 14689999999997654


Q ss_pred             eeeee
Q 025278          228 SIVYQ  232 (255)
Q Consensus       228 ~~~~~  232 (255)
                      ...+.
T Consensus        79 n~~~~   83 (218)
T 3l4b_C           79 NLFIA   83 (218)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            43333

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=95.85  E-value=0.028  Score=47.97  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCchHHHHHHHHHH-HhcCCcEEEEecChhh
Q 025278          151 GKSILVLGGAGGVGTMVIQLAK-HVFGASKVAATSSTAK  188 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~-~~~g~~vi~~~~~~~~  188 (255)
                      +.+|||+||+|.+|...++.+. . .|.+|++++++..+
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~   39 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRD-TNHSVVIVDSLVGT   39 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-CCCEEEEEECCTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHh-CCCEEEEEecCCcc
Confidence            4589999999999999888877 7 48999999876543

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.85  E-value=0.017  Score=50.70  Aligned_cols=73  Identities=21%  Similarity=0.270  Sum_probs=49.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEE--cCCCc-cccccCCCccEEEECCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAI--DYTKE-NIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~--~~~~~-~~~~~~~~~d~vid~~G~~  225 (255)
                      +++|+|+| +|.+|...+..+.. .|.+|++++++.++.+.+. +++....+  |..+. ++.+..+++|+||+|++..
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~~-~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLTD-SGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHT-TTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHh-CcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            57899998 89999998888877 4889989999988776543 34321222  33221 2223345899999999853

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=95.85  E-value=0.026  Score=49.61  Aligned_cols=74  Identities=24%  Similarity=0.424  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh--HH-HHHHcCCCEE-EcCCCcc-ccc-------cCCC-cc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK--LD-LLRSLGADLA-IDYTKEN-IED-------LPEK-FD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~--~~-~~~~~g~~~v-~~~~~~~-~~~-------~~~~-~d  216 (255)
                      ++++++|+|++|++|...+..+... |++|+++++++..  ++ ..++.+...+ .|-.+.. ...       ...+ +|
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~-Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARD-GATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHC-CCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            5789999999999999988888774 9999998876432  22 2345554322 2322222 111       1234 99


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|++.|.
T Consensus       291 ~lV~nAGv  298 (454)
T 3u0b_A          291 ILVNNAGI  298 (454)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999994

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.85  E-value=0.011  Score=50.40  Aligned_cols=87  Identities=17%  Similarity=0.198  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++. +.+.+++.|+..      .++.+.....|+|+-++.......
T Consensus       175 ~gktvGIIG-lG~IG~~vA~~l~~f-G~~V~~~d~~~-~~~~~~~~g~~~------~~l~ell~~aDvV~l~~Plt~~T~  245 (365)
T 4hy3_A          175 AGSEIGIVG-FGDLGKALRRVLSGF-RARIRVFDPWL-PRSMLEENGVEP------ASLEDVLTKSDFIFVVAAVTSENK  245 (365)
T ss_dssp             SSSEEEEEC-CSHHHHHHHHHHTTS-CCEEEEECSSS-CHHHHHHTTCEE------CCHHHHHHSCSEEEECSCSSCC--
T ss_pred             CCCEEEEec-CCcccHHHHHhhhhC-CCEEEEECCCC-CHHHHhhcCeee------CCHHHHHhcCCEEEEcCcCCHHHH
Confidence            378999999 999999999999985 99999999875 445556677642      133444457899998876432221


Q ss_pred             e-----eeeccccCCceEEEEe
Q 025278          230 V-----YQKCDKFQEKSLINFG  246 (255)
Q Consensus       230 ~-----~~~~~~~~~G~~v~~G  246 (255)
                      .     .+..++ +++.++.++
T Consensus       246 ~li~~~~l~~mk-~gailIN~a  266 (365)
T 4hy3_A          246 RFLGAEAFSSMR-RGAAFILLS  266 (365)
T ss_dssp             -CCCHHHHHTSC-TTCEEEECS
T ss_pred             hhcCHHHHhcCC-CCcEEEECc
Confidence            1     233344 567777776

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.85  E-value=0.016  Score=43.75  Aligned_cols=100  Identities=11%  Similarity=0.043  Sum_probs=62.5

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCC--C-EEEcCCCccccccCCCc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGA--D-LAIDYTKENIEDLPEKF  215 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~--~-~v~~~~~~~~~~~~~~~  215 (255)
                      +....+.++++||-.| +|. |..+..+++.  +.++++++.+++..+.+++    .+.  . .++..+..+.....+.+
T Consensus        26 ~~~~~~~~~~~vldiG-~G~-G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVG-CGT-GGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI  101 (192)
T ss_dssp             HHHHCCCTTCEEEEES-CTT-SHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred             HHhcCCCCCCEEEEEC-CCC-CHHHHHHHHh--cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence            3455778999999999 666 8888888886  3899999999998887754    333  1 22222211111112479


Q ss_pred             cEEEECCCCc---cceeeeeeccccCCceEEEEee
Q 025278          216 DVVFDAVGKM---CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       216 d~vid~~G~~---~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      |+|+-.....   .....+.+.++ ++|+++....
T Consensus       102 D~v~~~~~~~~~~~~l~~~~~~l~-~gG~l~~~~~  135 (192)
T 1l3i_A          102 DIAVVGGSGGELQEILRIIKDKLK-PGGRIIVTAI  135 (192)
T ss_dssp             EEEEESCCTTCHHHHHHHHHHTEE-EEEEEEEEEC
T ss_pred             CEEEECCchHHHHHHHHHHHHhcC-CCcEEEEEec
Confidence            9999653311   22223345555 6888877643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.84  E-value=0.02  Score=46.01  Aligned_cols=100  Identities=16%  Similarity=0.148  Sum_probs=63.0

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc----CCC--EEEcCCCccccccCCCccE
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL----GAD--LAIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~----g~~--~v~~~~~~~~~~~~~~~d~  217 (255)
                      .....+++.+||-+| +| .|..+..+++.  +.++++++.+++.++.+++.    |..  ..+..+..+.....+.+|+
T Consensus        31 ~~l~~~~~~~vLDiG-cG-~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~  106 (260)
T 1vl5_A           31 QIAALKGNEEVLDVA-TG-GGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHI  106 (260)
T ss_dssp             HHHTCCSCCEEEEET-CT-TCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEE
T ss_pred             HHhCCCCCCEEEEEe-CC-CCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEE
Confidence            344567899999999 55 68888888875  45999999999888877542    322  2222222222111257999


Q ss_pred             EEECCCCc------cceeeeeeccccCCceEEEEeec
Q 025278          218 VFDAVGKM------CISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       218 vid~~G~~------~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      |+....-.      .....+.+.++ ++|++++....
T Consensus       107 V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~~~~~~  142 (260)
T 1vl5_A          107 VTCRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNS  142 (260)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             EEEhhhhHhcCCHHHHHHHHHHHcC-CCCEEEEEEcC
Confidence            99764421      22333455666 78999886543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.82  E-value=0.034  Score=44.82  Aligned_cols=103  Identities=16%  Similarity=0.125  Sum_probs=65.7

Q ss_pred             HHHHhc-ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccC
Q 025278          141 EGLERS-AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLP  212 (255)
Q Consensus       141 ~~l~~~-~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~  212 (255)
                      ..+... .++++++||-+| +| .|..+..+++. .+.++++++.+++.++.+++    .|..   .++..+-.++....
T Consensus        36 ~~l~~l~~~~~~~~vLDiG-cG-~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  112 (267)
T 3kkz_A           36 KALSFIDNLTEKSLIADIG-CG-TGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN  112 (267)
T ss_dssp             HHHTTCCCCCTTCEEEEET-CT-TCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred             HHHHhcccCCCCCEEEEeC-CC-CCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC
Confidence            344433 478899999999 55 48888899987 57899999999998877754    3321   22322222222123


Q ss_pred             CCccEEEECCC-----CccceeeeeeccccCCceEEEEee
Q 025278          213 EKFDVVFDAVG-----KMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       213 ~~~d~vid~~G-----~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      +.+|+|+-.-.     .......+.+.++ ++|++++...
T Consensus       113 ~~fD~i~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~  151 (267)
T 3kkz_A          113 EELDLIWSEGAIYNIGFERGLNEWRKYLK-KGGYLAVSEC  151 (267)
T ss_dssp             TCEEEEEESSCGGGTCHHHHHHHHGGGEE-EEEEEEEEEE
T ss_pred             CCEEEEEEcCCceecCHHHHHHHHHHHcC-CCCEEEEEEe
Confidence            57999995432     1222334456666 7899887654

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.81  E-value=0.013  Score=50.02  Aligned_cols=74  Identities=19%  Similarity=0.278  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHH-HHH-HcCCCEEEcC--CCc-cccccCCCccEEEECCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLD-LLR-SLGADLAIDY--TKE-NIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~-~~~-~~g~~~v~~~--~~~-~~~~~~~~~d~vid~~G  223 (255)
                      .+++|||+||+|.+|...+..+... | .+|++++++.++.. .++ .-+. .++..  .+. .+.+..+++|+||.++|
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~l~~~~~v-~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLEL-GVNQVHVVDNLLSAEKINVPDHPAV-RFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCSEEEEECCCTTCCGGGSCCCTTE-EEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHc-CCceEEEEECCCCCchhhccCCCce-EEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            4678999999999999998888874 8 99999998764421 111 1111 22222  221 23334568999999998


Q ss_pred             Cc
Q 025278          224 KM  225 (255)
Q Consensus       224 ~~  225 (255)
                      ..
T Consensus       109 ~~  110 (377)
T 2q1s_A          109 YH  110 (377)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.81  E-value=0.0095  Score=49.07  Aligned_cols=68  Identities=16%  Similarity=0.210  Sum_probs=50.6

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      .+|.|+| +|.+|...+..+... |.+|++.++++++.+.+++.|... .    .+..+..++.|+||.|+..+.
T Consensus         6 m~i~iiG-~G~~G~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~g~~~-~----~~~~~~~~~~D~vi~~v~~~~   73 (299)
T 1vpd_A            6 MKVGFIG-LGIMGKPMSKNLLKA-GYSLVVSDRNPEAIADVIAAGAET-A----STAKAIAEQCDVIITMLPNSP   73 (299)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCEE-C----SSHHHHHHHCSEEEECCSSHH
T ss_pred             ceEEEEC-chHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHCCCee-c----CCHHHHHhCCCEEEEECCCHH
Confidence            3799999 899999988887774 889999999999988887777532 1    122222346899999998543

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=95.80  E-value=0.042  Score=48.73  Aligned_cols=76  Identities=26%  Similarity=0.438  Sum_probs=49.4

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChh---hH----HHHHHcCCCEE-E--cCCCcc-ccc----c
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTA---KL----DLLRSLGADLA-I--DYTKEN-IED----L  211 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~---~~----~~~~~~g~~~v-~--~~~~~~-~~~----~  211 (255)
                      ++++.++||+||+|++|...+..+... |.+ ++++.++..   +.    +.+++.|.... +  |..+.. ...    .
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~-G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARR-GAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHH-TCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHc-CCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence            467899999999999999988877774 775 888888764   12    22345565432 2  222211 111    1


Q ss_pred             --CCCccEEEECCCC
Q 025278          212 --PEKFDVVFDAVGK  224 (255)
Q Consensus       212 --~~~~d~vid~~G~  224 (255)
                        ...+|+||.+.|.
T Consensus       302 ~~~g~ld~VIh~AG~  316 (486)
T 2fr1_A          302 GDDVPLSAVFHAAAT  316 (486)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             HhcCCCcEEEECCcc
Confidence              1357999999994

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=95.80  E-value=0.027  Score=44.69  Aligned_cols=103  Identities=14%  Similarity=0.171  Sum_probs=64.9

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC--EEEcCCCccccccCCCc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPEKF  215 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~~  215 (255)
                      .+....++++.+||-+| +|. |..+..+++.  +.++++++.+++.++.+++    .+..  .++..+..+.....+.+
T Consensus        13 ~~~~~~~~~~~~vLDiG-cG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f   88 (239)
T 1xxl_A           13 MIKTAECRAEHRVLDIG-AGA-GHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF   88 (239)
T ss_dssp             HHHHHTCCTTCEEEEES-CTT-SHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred             HHHHhCcCCCCEEEEEc-cCc-CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcE
Confidence            34567788999999998 555 8888888775  5699999999988877653    2322  22222222222123579


Q ss_pred             cEEEECCCCc------cceeeeeeccccCCceEEEEeecc
Q 025278          216 DVVFDAVGKM------CISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       216 d~vid~~G~~------~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      |+|+-...-.      .....+.+.++ ++|++++.....
T Consensus        89 D~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~  127 (239)
T 1xxl_A           89 DIITCRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYA  127 (239)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECB
T ss_pred             EEEEECCchhhccCHHHHHHHHHHHcC-CCcEEEEEEcCC
Confidence            9999653321      12233345566 789998876543

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=95.79  E-value=0.029  Score=50.29  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=29.6

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEE-ecC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAA-TSS  185 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~-~~~  185 (255)
                      +++++++||+||+|++|...++.+... |++ ++.+ .++
T Consensus       248 ~~~~~~vLITGgsgGIG~~lA~~La~~-G~~~vvl~~~R~  286 (525)
T 3qp9_A          248 WQADGTVLVTGAEEPAAAEAARRLARD-GAGHLLLHTTPS  286 (525)
T ss_dssp             SCTTSEEEESSTTSHHHHHHHHHHHHH-TCCEEEEEECCC
T ss_pred             ecCCCEEEEECCCCcHHHHHHHHHHHc-CCCEEEEEeCCC
Confidence            567899999999999999988877764 777 5555 665

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=95.79  E-value=0.034  Score=44.36  Aligned_cols=103  Identities=11%  Similarity=-0.076  Sum_probs=67.0

Q ss_pred             HHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC-CEEEcCCCccccccCCCccEE
Q 025278          140 YEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA-DLAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       140 ~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~d~v  218 (255)
                      ...+......++.+||-+| +| .|..+..+++...+.++++++.+++.++.+++... -.++..+..+.. ..+.+|+|
T Consensus        23 ~~l~~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v   99 (259)
T 2p35_A           23 RDLLAQVPLERVLNGYDLG-CG-PGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLL   99 (259)
T ss_dssp             HHHHTTCCCSCCSSEEEET-CT-TTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEE
T ss_pred             HHHHHhcCCCCCCEEEEec-Cc-CCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEE
Confidence            3445566678889999998 55 58888888887557899999999999888876421 223333222222 23579999


Q ss_pred             EECCCCc------cceeeeeeccccCCceEEEEe
Q 025278          219 FDAVGKM------CISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       219 id~~G~~------~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      +-...-.      .....+.+.++ ++|++++.-
T Consensus       100 ~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~  132 (259)
T 2p35_A          100 YANAVFQWVPDHLAVLSQLMDQLE-SGGVLAVQM  132 (259)
T ss_dssp             EEESCGGGSTTHHHHHHHHGGGEE-EEEEEEEEE
T ss_pred             EEeCchhhCCCHHHHHHHHHHhcC-CCeEEEEEe
Confidence            9754311      12223355566 788887754

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=95.79  E-value=0.023  Score=47.42  Aligned_cols=73  Identities=23%  Similarity=0.341  Sum_probs=45.8

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh--hh---HHHHHHcCCCEEEcC--CCc-cccccCCC--ccEEEEC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST--AK---LDLLRSLGADLAIDY--TKE-NIEDLPEK--FDVVFDA  221 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~--~~---~~~~~~~g~~~v~~~--~~~-~~~~~~~~--~d~vid~  221 (255)
                      ++|||+||+|.+|...+..+.. .|.+|++++++.  ..   .+.++..+--..+..  .+. .+.+..++  +|+||.+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALS-QGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   80 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             cEEEEeCCCchhHHHHHHHHHh-CCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence            4799999999999999888887 489999998642  11   222232231222322  221 12222334  9999999


Q ss_pred             CCCc
Q 025278          222 VGKM  225 (255)
Q Consensus       222 ~G~~  225 (255)
                      +|..
T Consensus        81 A~~~   84 (347)
T 1orr_A           81 AGQV   84 (347)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            9843

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.78  E-value=0.058  Score=43.83  Aligned_cols=67  Identities=13%  Similarity=0.098  Sum_probs=51.2

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC-EEEcCCCccccccCCCccEEEECCCCcc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD-LAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      +|.|+| +|.+|...+..+... |.+|+++++++++.+.+++.|.. .+.+    +..+. .+.|+||-|+....
T Consensus         2 ~i~iiG-~G~~G~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~-~~~D~vi~av~~~~   69 (279)
T 2f1k_A            2 KIGVVG-LGLIGASLAGDLRRR-GHYLIGVSRQQSTCEKAVERQLVDEAGQ----DLSLL-QTAKIIFLCTPIQL   69 (279)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTSCSEEES----CGGGG-TTCSEEEECSCHHH
T ss_pred             EEEEEc-CcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHhCCCCccccC----CHHHh-CCCCEEEEECCHHH
Confidence            688999 899999988888774 88999999999998888887753 2221    23334 57899999988543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.77  E-value=0.013  Score=48.73  Aligned_cols=68  Identities=18%  Similarity=0.138  Sum_probs=51.4

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      -.+|.|+| +|.+|...++.+... |.+|++.++++++.+.+.+.|+...     .+..+..+..|+||-|+..+
T Consensus        21 m~~I~iIG-~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g~~~~-----~~~~~~~~~aDvvi~~vp~~   88 (310)
T 3doj_A           21 MMEVGFLG-LGIMGKAMSMNLLKN-GFKVTVWNRTLSKCDELVEHGASVC-----ESPAEVIKKCKYTIAMLSDP   88 (310)
T ss_dssp             SCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSGGGGHHHHHTTCEEC-----SSHHHHHHHCSEEEECCSSH
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHCCCeEc-----CCHHHHHHhCCEEEEEcCCH
Confidence            36899999 999999988888774 8999999999999988888776321     12222234578888888754

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.75  E-value=0.012  Score=45.56  Aligned_cols=68  Identities=15%  Similarity=0.081  Sum_probs=45.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC--cEEEEecChhhHHHHHHcCCCEEEcCCC---ccccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA--SKVAATSSTAKLDLLRSLGADLAIDYTK---ENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~--~vi~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~d~vid~~G~  224 (255)
                      .+++|+|+||+|.+|...++.+... |.  +|+++++++++    ...+. .++..+-   +.+.+..  +|+||+++|.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~-g~~~~V~~~~r~~~~----~~~~~-~~~~~D~~~~~~~~~~~--~d~vi~~a~~   75 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALA----EHPRL-DNPVGPLAELLPQLDGS--IDTAFCCLGT   75 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHC-TTCCEEECCBSSCCC----CCTTE-ECCBSCHHHHGGGCCSC--CSEEEECCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhC-CCCCeEEEEeCCCcc----cCCCc-eEEeccccCHHHHHHhh--hcEEEECeee
Confidence            3578999999999999998888874 76  89999987765    11111 1111111   1122222  8999999985


Q ss_pred             c
Q 025278          225 M  225 (255)
Q Consensus       225 ~  225 (255)
                      .
T Consensus        76 ~   76 (215)
T 2a35_A           76 T   76 (215)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.72  E-value=0.0037  Score=51.75  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      +++|||+||+|.+|...+..+... |.+|+++++++.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVAS-GEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHC-CCEEEEEecCCc
Confidence            579999999999999999888874 899999998765

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=95.72  E-value=0.045  Score=48.64  Aligned_cols=73  Identities=30%  Similarity=0.465  Sum_probs=46.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChh---h----HHHHHHcCCCEEE---cCCCcc-cc----cc--CC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTA---K----LDLLRSLGADLAI---DYTKEN-IE----DL--PE  213 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~---~----~~~~~~~g~~~v~---~~~~~~-~~----~~--~~  213 (255)
                      +++||+|++|++|...++.+... |+ +++.+.++..   +    .+.+++.|....+   |-.+.. ..    +.  ..
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~-Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g  318 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQ-GAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA  318 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHT-TCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred             CEEEEECCCCchHHHHHHHHHHC-CCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence            89999999999999988877764 77 6677776532   2    2234556754332   222211 11    11  13


Q ss_pred             CccEEEECCCCc
Q 025278          214 KFDVVFDAVGKM  225 (255)
Q Consensus       214 ~~d~vid~~G~~  225 (255)
                      .+|+||++.|..
T Consensus       319 ~ld~vVh~AGv~  330 (496)
T 3mje_A          319 PLTAVFHSAGVA  330 (496)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CCeEEEECCccc
Confidence            699999999953

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.72  E-value=0.0053  Score=51.26  Aligned_cols=117  Identities=20%  Similarity=0.170  Sum_probs=68.9

Q ss_pred             hccchhHHHHHHHHHh---------cc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH-HHHHHcCCC
Q 025278          130 ASLPLATETAYEGLER---------SA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL-DLLRSLGAD  198 (255)
Q Consensus       130 a~l~~~~~ta~~~l~~---------~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~-~~~~~~g~~  198 (255)
                      ..+|++...+...++.         .. --.|++++|+|++.-+|..+++++... +++|.+++++..+. +.+.+++..
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~-gAtVtv~nR~~~~l~~ra~~la~~  224 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLAND-GATVYSVDVNNIQKFTRGESLKLN  224 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTT-SCEEEEECSSEEEEEESCCCSSCC
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHC-CCEEEEEeCchHHHHhHHHHHhhh
Confidence            3446555555555544         22 346899999994335799999999885 89998888764332 112223321


Q ss_pred             -EEE---c-CCCccccccCCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          199 -LAI---D-YTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       199 -~v~---~-~~~~~~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                       +..   . .+..+..+....+|+||-++|.+... .-..+++ ++-.++-+|...
T Consensus       225 ~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~v-I~~e~vk-~GavVIDVgi~r  278 (320)
T 1edz_A          225 KHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYK-FPTEYIK-EGAVCINFACTK  278 (320)
T ss_dssp             CCEEEEEEECCHHHHHHHHHHCSEEEECCCCTTCC-BCTTTSC-TTEEEEECSSSC
T ss_pred             cccccccccccHhHHHHHhccCCEEEECCCCCcce-eCHHHcC-CCeEEEEcCCCc
Confidence             100   0 11123444455789999999986531 2234454 556777777654

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=95.71  E-value=0.034  Score=49.64  Aligned_cols=76  Identities=21%  Similarity=0.382  Sum_probs=48.9

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhh---H----HHHHHcCCCEE-E--cCCCcc-ccccC--C
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAK---L----DLLRSLGADLA-I--DYTKEN-IEDLP--E  213 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~---~----~~~~~~g~~~v-~--~~~~~~-~~~~~--~  213 (255)
                      +++++++||+|++|++|...+..+.. .|. +++++.++..+   .    +.+++.|.... +  |-.+.. ..+..  .
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~-~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~  334 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAA-EGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAY  334 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHH-TTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHh-CCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcC
Confidence            46789999999999999998887776 477 57777877531   2    22344564432 2  222211 11111  3


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|+||++.|.
T Consensus       335 ~ld~VVh~AGv  345 (511)
T 2z5l_A          335 PPNAVFHTAGI  345 (511)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCcEEEECCcc
Confidence            59999999984

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=95.71  E-value=0.037  Score=47.38  Aligned_cols=77  Identities=23%  Similarity=0.252  Sum_probs=49.7

Q ss_pred             cCCCCEEEEEcCCchHHHHHH-HHHHHhcCCcEEEEecChhh----------------HHHHHHcCCC-EEEcCCCccc-
Q 025278          148 FSAGKSILVLGGAGGVGTMVI-QLAKHVFGASKVAATSSTAK----------------LDLLRSLGAD-LAIDYTKENI-  208 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~-~~a~~~~g~~vi~~~~~~~~----------------~~~~~~~g~~-~v~~~~~~~~-  208 (255)
                      ...++++||+|+++++|++.+ .+|.. .|+.++++.+..+.                .+.+++.|.. ..++-+-.+. 
T Consensus        47 ~~~pK~vLVtGaSsGiGlA~AialAf~-~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e  125 (401)
T 4ggo_A           47 AKAPKNVLVLGCSNGYGLASRITAAFG-YGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDE  125 (401)
T ss_dssp             SCCCCEEEEESCSSHHHHHHHHHHHHH-HCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHH
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHHhh-CCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHH
Confidence            356799999999999999854 45534 38888888654321                1345666644 3344433221 


Q ss_pred             ---------cccCCCccEEEECCCCc
Q 025278          209 ---------EDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       209 ---------~~~~~~~d~vid~~G~~  225 (255)
                               .+..+++|+++.+.+..
T Consensus       126 ~i~~vi~~i~~~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          126 IKAQVIEEAKKKGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecccc
Confidence                     11246899999998854

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.68  E-value=0.14  Score=43.29  Aligned_cols=96  Identities=11%  Similarity=0.106  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHH-Hc----CCCEEEcCCCccccccCCCccEEEECC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLR-SL----GADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~-~~----g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      ....+++|+| +|.+|...+..+.... ..++.+.++++++.+.+. ++    |..... .  .+..+..++.|+|+.|+
T Consensus       127 ~~~~~v~iIG-aG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~-~--~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          127 PNARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRR-A--SSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             TTCCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEE-C--SSHHHHHTTCSEEEECC
T ss_pred             ccCCeEEEEC-CcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEE-e--CCHHHHHhcCCEEEEec
Confidence            4567999999 8999998766544333 457778899988877654 44    432211 1  12333345799999999


Q ss_pred             CCccc-eeeeeeccccCCceEEEEeecc
Q 025278          223 GKMCI-SIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       223 G~~~~-~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ..... .......++ ++-.++.+|...
T Consensus       203 ps~~~~pvl~~~~l~-~G~~V~~vgs~~  229 (350)
T 1x7d_A          203 ADKAYATIITPDMLE-PGMHLNAVGGDC  229 (350)
T ss_dssp             CCSSEEEEECGGGCC-TTCEEEECSCCB
T ss_pred             cCCCCCceecHHHcC-CCCEEEECCCCC
Confidence            97531 111124454 555666677643

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.68  E-value=0.056  Score=42.70  Aligned_cols=90  Identities=19%  Similarity=0.206  Sum_probs=56.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-hHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-KLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      -.|++|||.| +|.+|...+..+... |++|++++.+.. .++.+.+.+.-..+.. ... .+...++|+||-+++.+..
T Consensus        29 L~gk~VLVVG-gG~va~~ka~~Ll~~-GA~VtVvap~~~~~l~~l~~~~~i~~i~~-~~~-~~dL~~adLVIaAT~d~~~  104 (223)
T 3dfz_A           29 LKGRSVLVVG-GGTIATRRIKGFLQE-GAAITVVAPTVSAEINEWEAKGQLRVKRK-KVG-EEDLLNVFFIVVATNDQAV  104 (223)
T ss_dssp             CTTCCEEEEC-CSHHHHHHHHHHGGG-CCCEEEECSSCCHHHHHHHHTTSCEEECS-CCC-GGGSSSCSEEEECCCCTHH
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHcCCcEEEEC-CCC-HhHhCCCCEEEECCCCHHH
Confidence            3578899999 899999999999885 999999976432 3433333332223321 111 1234689999999987655


Q ss_pred             eeeeeeccccCCceEEE
Q 025278          228 SIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       228 ~~~~~~~~~~~~G~~v~  244 (255)
                      ........+  .|..|.
T Consensus       105 N~~I~~~ak--~gi~VN  119 (223)
T 3dfz_A          105 NKFVKQHIK--NDQLVN  119 (223)
T ss_dssp             HHHHHHHSC--TTCEEE
T ss_pred             HHHHHHHHh--CCCEEE
Confidence            444433332  355544

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=95.67  E-value=0.007  Score=48.18  Aligned_cols=98  Identities=17%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCCC---EEEcCCCcc-cccc-----
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGAD---LAIDYTKEN-IEDL-----  211 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~-~~~~-----  211 (255)
                      ....++++||-+| +| .|..+..+++... +.+++.++.+++..+.+++    .|..   .++..+... ....     
T Consensus        56 ~~~~~~~~VLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~  133 (239)
T 2hnk_A           56 TKISGAKRIIEIG-TF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKS  133 (239)
T ss_dssp             HHHHTCSEEEEEC-CT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSS
T ss_pred             HHhhCcCEEEEEe-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcc
Confidence            3456788999999 55 5888899998753 5799999999998877754    3432   222222111 1111     


Q ss_pred             ----------C-CCccEEEECCCCcc---ceeeeeeccccCCceEEEEe
Q 025278          212 ----------P-EKFDVVFDAVGKMC---ISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       212 ----------~-~~~d~vid~~G~~~---~~~~~~~~~~~~~G~~v~~G  246 (255)
                                . +.+|+||-......   ....+.+.++ ++|+++.--
T Consensus       134 ~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~-pgG~lv~~~  181 (239)
T 2hnk_A          134 APSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLK-PGGLLIADN  181 (239)
T ss_dssp             CCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred             cccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcC-CCeEEEEEc
Confidence                      1 57999997765432   2244456666 789888753

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=95.65  E-value=0.048  Score=45.41  Aligned_cols=75  Identities=19%  Similarity=0.152  Sum_probs=49.1

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCCC--EEEcCCCccccccCCCcc
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~~d  216 (255)
                      ....+++|++||=.| +| .|..+.++++.+. +.++++++.++++++.+++    +|..  .++..+..++....+.+|
T Consensus       112 ~~l~~~~g~~VLDlg-~G-~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD  189 (315)
T 1ixk_A          112 VALDPKPGEIVADMA-AA-PGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFD  189 (315)
T ss_dssp             HHHCCCTTCEEEECC-SS-CSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEE
T ss_pred             HHhCCCCCCEEEEeC-CC-CCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCC
Confidence            344678999998887 44 3666777777643 4789999999999887743    4542  334333333322345799


Q ss_pred             EEEE
Q 025278          217 VVFD  220 (255)
Q Consensus       217 ~vid  220 (255)
                      +|+-
T Consensus       190 ~Il~  193 (315)
T 1ixk_A          190 KILL  193 (315)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9884

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=95.64  E-value=0.015  Score=48.90  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=60.0

Q ss_pred             CEEEEEcCCchHHHHHHHHHH-HhcCCcEEE-EecChhhHHH-HHHcCCCEEEcCCCccccccC--CCccEEEECCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAK-HVFGASKVA-ATSSTAKLDL-LRSLGADLAIDYTKENIEDLP--EKFDVVFDAVGKMC  226 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~-~~~g~~vi~-~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~--~~~d~vid~~G~~~  226 (255)
                      -+|.|+| +|.+|...++.++ ...+.++++ .++++++.+. ++++|...+++    ++.+..  .++|+|+.|+....
T Consensus         9 ~~v~iiG-~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~----~~~~~l~~~~~D~V~i~tp~~~   83 (346)
T 3cea_A            9 LRAAIIG-LGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT----NYKDMIDTENIDAIFIVAPTPF   83 (346)
T ss_dssp             EEEEEEC-CSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES----CHHHHHTTSCCSEEEECSCGGG
T ss_pred             ceEEEEc-CCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC----CHHHHhcCCCCCEEEEeCChHh
Confidence            4799999 8999998887776 444677664 5788888765 46778765553    223322  37999999999766


Q ss_pred             ceeeeeeccccCCceEEEEe
Q 025278          227 ISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       227 ~~~~~~~~~~~~~G~~v~~G  246 (255)
                      -...+..+++  .|+-+++.
T Consensus        84 h~~~~~~al~--~G~~v~~e  101 (346)
T 3cea_A           84 HPEMTIYAMN--AGLNVFCE  101 (346)
T ss_dssp             HHHHHHHHHH--TTCEEEEC
T ss_pred             HHHHHHHHHH--CCCEEEEc
Confidence            5555566664  36655553

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.63  E-value=0.014  Score=49.15  Aligned_cols=87  Identities=18%  Similarity=0.243  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++|.|+| .|.+|...++.++.+ |.+|++.+++.++.  +++. +.. .    .+..+.....|+|+.++.......
T Consensus       145 ~g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~d~~~~~~--~~~~-~~~-~----~~l~ell~~aDvV~l~~p~~~~t~  214 (333)
T 1j4a_A          145 RDQVVGVVG-TGHIGQVFMQIMEGF-GAKVITYDIFRNPE--LEKK-GYY-V----DSLDDLYKQADVISLHVPDVPANV  214 (333)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCCHH--HHHT-TCB-C----SCHHHHHHHCSEEEECSCCCGGGT
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHC-CCEEEEECCCcchh--HHhh-Cee-c----CCHHHHHhhCCEEEEcCCCcHHHH
Confidence            468999999 999999999999985 99999999877655  2332 321 1    123333446899999987443221


Q ss_pred             e-----eeeccccCCceEEEEee
Q 025278          230 V-----YQKCDKFQEKSLINFGL  247 (255)
Q Consensus       230 ~-----~~~~~~~~~G~~v~~G~  247 (255)
                      .     .+..++ +++.++.+|.
T Consensus       215 ~li~~~~l~~mk-~ga~lIn~ar  236 (333)
T 1j4a_A          215 HMINDESIAKMK-QDVVIVNVSR  236 (333)
T ss_dssp             TCBSHHHHHHSC-TTEEEEECSC
T ss_pred             HHHhHHHHhhCC-CCcEEEECCC
Confidence            1     223344 5667777765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=95.63  E-value=0.065  Score=43.15  Aligned_cols=102  Identities=12%  Similarity=0.084  Sum_probs=64.4

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCCCc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPEKF  215 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~  215 (255)
                      ++...++++++||-+| +|. |..+..+++.. +.++++++.+++.++.+++    .|..   .++..+..+.....+.+
T Consensus        54 ~~~~~~~~~~~vLDiG-cG~-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  130 (273)
T 3bus_A           54 IALLDVRSGDRVLDVG-CGI-GKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASF  130 (273)
T ss_dssp             HHHSCCCTTCEEEEES-CTT-SHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCE
T ss_pred             HHhcCCCCCCEEEEeC-CCC-CHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCc
Confidence            3566778999999999 554 88888888874 8999999999988777754    2321   22222222211112479


Q ss_pred             cEEEECCCC------ccceeeeeeccccCCceEEEEeec
Q 025278          216 DVVFDAVGK------MCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       216 d~vid~~G~------~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      |+|+-.-.-      ......+.+.++ ++|++++....
T Consensus       131 D~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~  168 (273)
T 3bus_A          131 DAVWALESLHHMPDRGRALREMARVLR-PGGTVAIADFV  168 (273)
T ss_dssp             EEEEEESCTTTSSCHHHHHHHHHTTEE-EEEEEEEEEEE
T ss_pred             cEEEEechhhhCCCHHHHHHHHHHHcC-CCeEEEEEEee
Confidence            999854221      112233355566 78998876543

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=95.62  E-value=0.0095  Score=47.56  Aligned_cols=69  Identities=28%  Similarity=0.384  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-hHHHHHHcCCCEEE--cCCCcc-ccc---c--CCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-KLDLLRSLGADLAI--DYTKEN-IED---L--PEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-~~~~~~~~g~~~v~--~~~~~~-~~~---~--~~~~d~vid  220 (255)
                      .++++||+||++++|...++.+....+.+|+..+++++ +.+.+      ..+  |-.+.. ..+   .  ..++|++|+
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~~~------~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~   76 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENL------KFIKADLTKQQDITNVLDIIKNVSFDGIFL   76 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCCTTE------EEEECCTTCHHHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccccccc------eEEecCcCCHHHHHHHHHHHHhCCCCEEEE
Confidence            46789999999999999876665424788888887654 22111      122  222211 111   0  237899999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      ++|.
T Consensus        77 nAg~   80 (244)
T 4e4y_A           77 NAGI   80 (244)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9994

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=95.60  E-value=0.025  Score=43.84  Aligned_cols=47  Identities=21%  Similarity=0.171  Sum_probs=37.9

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS  194 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~  194 (255)
                      ....+.++.+||-.| +|. |..+..+++.  |.+|+++|.+++-++.+++
T Consensus        16 ~~l~~~~~~~vLD~G-CG~-G~~~~~la~~--g~~V~gvD~S~~~l~~a~~   62 (203)
T 1pjz_A           16 SSLNVVPGARVLVPL-CGK-SQDMSWLSGQ--GYHVVGAELSEAAVERYFT   62 (203)
T ss_dssp             HHHCCCTTCEEEETT-TCC-SHHHHHHHHH--CCEEEEEEECHHHHHHHHH
T ss_pred             HhcccCCCCEEEEeC-CCC-cHhHHHHHHC--CCeEEEEeCCHHHHHHHHH
Confidence            344567889999998 554 7888888875  7899999999998888864

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.59  E-value=0.058  Score=45.12  Aligned_cols=94  Identities=10%  Similarity=0.058  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHH-HcC---CCEEEcCCCccccccCCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLR-SLG---ADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~-~~g---~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      ....+++|+| +|.+|...+..++..+ ..++.+.+++++|.+.+. +++   ....  .  .+..+.. ++|+|+.|+.
T Consensus       123 ~~~~~v~iIG-aG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~--~--~~~~e~v-~aDvVi~aTp  196 (322)
T 1omo_A          123 KNSSVFGFIG-CGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS--V--QPAEEAS-RCDVLVTTTP  196 (322)
T ss_dssp             TTCCEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE--E--CCHHHHT-SSSEEEECCC
T ss_pred             CCCCEEEEEc-CcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE--E--CCHHHHh-CCCEEEEeeC
Confidence            5678999999 8999998877666543 456777889988876653 443   2221  1  2344455 7999999998


Q ss_pred             CccceeeeeeccccCCceEEEEeeccC
Q 025278          224 KMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       224 ~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +..... ....++ ++-.++.+|.+..
T Consensus       197 ~~~pv~-~~~~l~-~G~~V~~ig~~~p  221 (322)
T 1omo_A          197 SRKPVV-KAEWVE-EGTHINAIGADGP  221 (322)
T ss_dssp             CSSCCB-CGGGCC-TTCEEEECSCCST
T ss_pred             CCCcee-cHHHcC-CCeEEEECCCCCC
Confidence            654221 124454 5556666776654

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.57  E-value=0.007  Score=50.55  Aligned_cols=83  Identities=18%  Similarity=0.162  Sum_probs=53.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHH-hcCCcEEEE-ecChhh--HHHHHHcCCCEEEcCCCcccccc--CCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKH-VFGASKVAA-TSSTAK--LDLLRSLGADLAIDYTKENIEDL--PEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~-~~g~~vi~~-~~~~~~--~~~~~~~g~~~v~~~~~~~~~~~--~~~~d~vid~~G~~  225 (255)
                      -+|.|+| +|.+|...+..+.. ..+.+++.+ ++++++  ++.++++|.....+ +-+...+.  ..++|+||+|+|..
T Consensus         5 irVaIIG-~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~-~~e~ll~~~~~~~iDvV~~atp~~   82 (312)
T 1nvm_B            5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYA-GVEGLIKLPEFADIDFVFDATSAS   82 (312)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESS-HHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             CEEEEEc-CcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccC-CHHHHHhccCCCCCcEEEECCChH
Confidence            4799999 89999988887744 446666644 667666  56677888653211 10111111  14799999999966


Q ss_pred             cceeeeeeccc
Q 025278          226 CISIVYQKCDK  236 (255)
Q Consensus       226 ~~~~~~~~~~~  236 (255)
                      .....+...++
T Consensus        83 ~h~~~a~~al~   93 (312)
T 1nvm_B           83 AHVQNEALLRQ   93 (312)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.54  E-value=0.056  Score=44.50  Aligned_cols=73  Identities=16%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEc-------CCCccccccC---CCccEEEEC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID-------YTKENIEDLP---EKFDVVFDA  221 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~-------~~~~~~~~~~---~~~d~vid~  221 (255)
                      .+|.|+| +|.+|...+..+... |.+|+++++++++.+.+++.|......       ....+..+..   +++|+||-|
T Consensus         4 m~i~iiG-~G~~G~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~   81 (316)
T 2ew2_A            4 MKIAIAG-AGAMGSRLGIMLHQG-GNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL   81 (316)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC
T ss_pred             CeEEEEC-cCHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEE
Confidence            4799999 899999988777764 889999999999988887666432210       0000111222   378888888


Q ss_pred             CCCcc
Q 025278          222 VGKMC  226 (255)
Q Consensus       222 ~G~~~  226 (255)
                      +....
T Consensus        82 v~~~~   86 (316)
T 2ew2_A           82 TKAQQ   86 (316)
T ss_dssp             SCHHH
T ss_pred             ecccc
Confidence            87543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.51  E-value=0.042  Score=45.39  Aligned_cols=69  Identities=20%  Similarity=0.238  Sum_probs=49.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc-------CCCEEEcCCCccccccCCCccEEEEC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL-------GADLAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      .-.++|.|+| +|.+|...++.+. . |.+|++.++++++++.+.+.       +....-     +..+ ..++|+||+|
T Consensus        10 ~~~~~V~vIG-~G~MG~~iA~~la-a-G~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~-----~~~~-~~~aDlViea   80 (293)
T 1zej_A           10 HHHMKVFVIG-AGLMGRGIAIAIA-S-KHEVVLQDVSEKALEAAREQIPEELLSKIEFTT-----TLEK-VKDCDIVMEA   80 (293)
T ss_dssp             --CCEEEEEC-CSHHHHHHHHHHH-T-TSEEEEECSCHHHHHHHHHHSCGGGGGGEEEES-----SCTT-GGGCSEEEEC
T ss_pred             cCCCeEEEEe-eCHHHHHHHHHHH-c-CCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeC-----CHHH-HcCCCEEEEc
Confidence            3457899999 8999998777776 5 99999999999999888665       322111     1112 3578999998


Q ss_pred             CCCcc
Q 025278          222 VGKMC  226 (255)
Q Consensus       222 ~G~~~  226 (255)
                      +....
T Consensus        81 vpe~~   85 (293)
T 1zej_A           81 VFEDL   85 (293)
T ss_dssp             CCSCH
T ss_pred             CcCCH
Confidence            87554

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.50  E-value=0.024  Score=45.30  Aligned_cols=98  Identities=13%  Similarity=0.104  Sum_probs=63.4

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCCCccEE
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~d~v  218 (255)
                      ..++++.+||-+| +| .|..+..+++.. +.++++++.+++.++.+++    .|..   .++..+..++....+.+|+|
T Consensus        42 ~~~~~~~~vLDiG-~G-~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  118 (257)
T 3f4k_A           42 NELTDDAKIADIG-CG-TGGQTLFLADYV-KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLI  118 (257)
T ss_dssp             CCCCTTCEEEEET-CT-TSHHHHHHHHHC-CSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             hcCCCCCeEEEeC-CC-CCHHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEE
Confidence            4678899999999 55 488999999884 6699999999988877644    3421   22332222222123579999


Q ss_pred             EECCC-----CccceeeeeeccccCCceEEEEee
Q 025278          219 FDAVG-----KMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       219 id~~G-----~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      +-...     .......+.+.++ ++|++++...
T Consensus       119 ~~~~~l~~~~~~~~l~~~~~~L~-pgG~l~~~~~  151 (257)
T 3f4k_A          119 WSEGAIYNIGFERGMNEWSKYLK-KGGFIAVSEA  151 (257)
T ss_dssp             EEESCSCCCCHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred             EecChHhhcCHHHHHHHHHHHcC-CCcEEEEEEe
Confidence            85422     1222333455666 7899887763

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.50  E-value=0.016  Score=49.01  Aligned_cols=87  Identities=16%  Similarity=0.150  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++..+.+...  |+..+     .++.+..+..|+|+-++.......
T Consensus       172 ~gktvGIIG-lG~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~--g~~~~-----~~l~ell~~sDvV~l~~Plt~~T~  242 (345)
T 4g2n_A          172 TGRRLGIFG-MGRIGRAIATRARGF-GLAIHYHNRTRLSHALEE--GAIYH-----DTLDSLLGASDIFLIAAPGRPELK  242 (345)
T ss_dssp             TTCEEEEES-CSHHHHHHHHHHHTT-TCEEEEECSSCCCHHHHT--TCEEC-----SSHHHHHHTCSEEEECSCCCGGGT
T ss_pred             CCCEEEEEE-eChhHHHHHHHHHHC-CCEEEEECCCCcchhhhc--CCeEe-----CCHHHHHhhCCEEEEecCCCHHHH
Confidence            478999999 999999999999985 999999998765444322  44321     123333456788888877332111


Q ss_pred             -----eeeeccccCCceEEEEe
Q 025278          230 -----VYQKCDKFQEKSLINFG  246 (255)
Q Consensus       230 -----~~~~~~~~~~G~~v~~G  246 (255)
                           ..+..++ ++..++.++
T Consensus       243 ~li~~~~l~~mk-~gailIN~a  263 (345)
T 4g2n_A          243 GFLDHDRIAKIP-EGAVVINIS  263 (345)
T ss_dssp             TCBCHHHHHHSC-TTEEEEECS
T ss_pred             HHhCHHHHhhCC-CCcEEEECC
Confidence                 1123343 455666665

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.49  E-value=0.018  Score=48.72  Aligned_cols=89  Identities=24%  Similarity=0.192  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.+++.++. ..+++|+..+ .    +..+.....|+|+-++.......
T Consensus       167 ~g~tvGIIG-~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~-~~~~~g~~~~-~----~l~ell~~aDvV~l~~P~t~~t~  238 (347)
T 1mx3_A          167 RGETLGIIG-LGRVGQAVALRAKAF-GFNVLFYDPYLSDG-VERALGLQRV-S----TLQDLLFHSDCVTLHCGLNEHNH  238 (347)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECTTSCTT-HHHHHTCEEC-S----SHHHHHHHCSEEEECCCCCTTCT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHC-CCEEEEECCCcchh-hHhhcCCeec-C----CHHHHHhcCCEEEEcCCCCHHHH
Confidence            578999999 999999999999985 99999998866542 3456676322 1    22333346788888876432111


Q ss_pred             -----eeeeccccCCceEEEEee
Q 025278          230 -----VYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       230 -----~~~~~~~~~~G~~v~~G~  247 (255)
                           ..+..++ ++..++.++.
T Consensus       239 ~li~~~~l~~mk-~gailIN~ar  260 (347)
T 1mx3_A          239 HLINDFTVKQMR-QGAFLVNTAR  260 (347)
T ss_dssp             TSBSHHHHTTSC-TTEEEEECSC
T ss_pred             HHhHHHHHhcCC-CCCEEEECCC
Confidence                 1133343 4556666554

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=95.49  E-value=0.022  Score=48.16  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=29.1

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK  188 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~  188 (255)
                      +++|||+||+|.+|...++.+... |.+|+++++++++
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~   37 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASS   37 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECC----
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEECCCcc
Confidence            368999999999999998888774 8999999987654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.47  E-value=0.12  Score=37.79  Aligned_cols=76  Identities=11%  Similarity=0.102  Sum_probs=51.8

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC-hhhHHHHH---HcCCCEEEcCCCcc---ccc-cCCCccEEEECC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS-TAKLDLLR---SLGADLAIDYTKEN---IED-LPEKFDVVFDAV  222 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~-~~~~~~~~---~~g~~~v~~~~~~~---~~~-~~~~~d~vid~~  222 (255)
                      .++++|.| .|.+|...++.+... |.+|++++++ +++.+.++   ..|.. ++..+..+   +.+ ..+++|+||-++
T Consensus         3 ~~~vlI~G-~G~vG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (153)
T 1id1_A            3 KDHFIVCG-HSILAINTILQLNQR-GQNVTVISNLPEDDIKQLEQRLGDNAD-VIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHCTTCE-EEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCChHHHHHHHHhhcCCCe-EEEcCCCCHHHHHHcChhhCCEEEEec
Confidence            46789999 799999999988884 9999999997 46555543   23544 33332222   222 246899999999


Q ss_pred             CCcccee
Q 025278          223 GKMCISI  229 (255)
Q Consensus       223 G~~~~~~  229 (255)
                      +......
T Consensus        80 ~~d~~n~   86 (153)
T 1id1_A           80 DNDADNA   86 (153)
T ss_dssp             SCHHHHH
T ss_pred             CChHHHH
Confidence            8664433

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.45  E-value=0.018  Score=44.78  Aligned_cols=69  Identities=19%  Similarity=0.229  Sum_probs=47.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cC-----CCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LG-----ADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g-----~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      +|+|+|++|.+|...+..+... |.+|+++++++++.+.+.+ ++     .+...    .+..+..++.|+||.|+....
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~~~   76 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATL-GHEIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPWEH   76 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCChhh
Confidence            6889998999999988777764 8899999999888766543 33     22111    122222346899999988543

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=95.45  E-value=0.0042  Score=51.40  Aligned_cols=70  Identities=23%  Similarity=0.359  Sum_probs=42.5

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHHHHcCCCEE-EcCCCccccccCCCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSLGADLA-IDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      ++|||+||+|.+|...+..+... | .++++++ +..+.+.+ ..+...+ .|..+..+.+..+++|+||.+++.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~-g-~~v~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~   73 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSES-N-EIVVIDNLSSGNEEFV-NEAARLVKADLAADDIKDYLKGAEEVWHIAAN   73 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTT-S-CEEEECCCSSCCGGGS-CTTEEEECCCTTTSCCHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhC-C-CEEEEEcCCCCChhhc-CCCcEEEECcCChHHHHHHhcCCCEEEECCCC
Confidence            36999999999999999888874 6 5665654 33332222 1111111 222223333334589999999884

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=95.44  E-value=0.044  Score=44.81  Aligned_cols=68  Identities=22%  Similarity=0.291  Sum_probs=49.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      .+|.|+|++|.+|...+..+... |.+|+++++++++.+.+++.|.+.    .  +..+..+..|+||.|+....
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~g~~~----~--~~~~~~~~aDvVi~av~~~~   79 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDS-AHHLAAIEIAPEGRDRLQGMGIPL----T--DGDGWIDEADVVVLALPDNI   79 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHS-SSEEEEECCSHHHHHHHHHTTCCC----C--CSSGGGGTCSEEEECSCHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHhcCCCc----C--CHHHHhcCCCEEEEcCCchH
Confidence            47999993399999988888774 889999999999888887777432    1  12222346788888877443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=95.40  E-value=0.075  Score=43.44  Aligned_cols=98  Identities=13%  Similarity=0.043  Sum_probs=63.0

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCCCccEEE
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPEKFDVVF  219 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~d~vi  219 (255)
                      .+.++.+||-+| +| .|..+..+++.. +.++++++.+++.++.+++    .|..   .++..+-.+.....+.+|+|+
T Consensus        79 ~~~~~~~vLDiG-cG-~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~  155 (297)
T 2o57_A           79 VLQRQAKGLDLG-AG-YGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW  155 (297)
T ss_dssp             CCCTTCEEEEET-CT-TSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred             CCCCCCEEEEeC-CC-CCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEE
Confidence            778999999998 55 688888898875 8899999999988777653    3321   222222222111124699999


Q ss_pred             ECCCC------ccceeeeeeccccCCceEEEEeec
Q 025278          220 DAVGK------MCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       220 d~~G~------~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      -.-.-      ......+.+.++ ++|++++....
T Consensus       156 ~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~  189 (297)
T 2o57_A          156 SQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPM  189 (297)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             ecchhhhcCCHHHHHHHHHHHcC-CCeEEEEEEec
Confidence            65331      122333455566 78998887653

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.39  E-value=0.049  Score=47.88  Aligned_cols=79  Identities=19%  Similarity=0.268  Sum_probs=51.9

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCC---cEEEEecChhhHHHHHHcCCCEE-EcCCCccc----cccCCCccEE
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGA---SKVAATSSTAKLDLLRSLGADLA-IDYTKENI----EDLPEKFDVV  218 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~---~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~~----~~~~~~~d~v  218 (255)
                      ++....+|+|+| +|++|..++.++......   ++++++.++.+.+..+..|.... ..-+..+.    ....++-|+|
T Consensus         9 ~~~~~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvV   87 (480)
T 2ph5_A            9 KILFKNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFL   87 (480)
T ss_dssp             CBCCCSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred             eecCCCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEE
Confidence            455667899999 999999999888775455   68888887776666666675433 22233332    2233334999


Q ss_pred             EECCCCcc
Q 025278          219 FDAVGKMC  226 (255)
Q Consensus       219 id~~G~~~  226 (255)
                      ++++-...
T Consensus        88 IN~s~~~~   95 (480)
T 2ph5_A           88 IDVSIGIS   95 (480)
T ss_dssp             EECCSSSC
T ss_pred             EECCcccc
Confidence            98664443

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.38  E-value=0.035  Score=50.63  Aligned_cols=74  Identities=20%  Similarity=0.332  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-hh-HHHHHHcCCCEEEcCCCc--cccc-------cCCCccEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AK-LDLLRSLGADLAIDYTKE--NIED-------LPEKFDVV  218 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-~~-~~~~~~~g~~~v~~~~~~--~~~~-------~~~~~d~v  218 (255)
                      .|++++|+||++++|.+.++.+.. .|++|++.++.. ++ .+.+++.|...+....+-  +...       ..+.+|++
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~-~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDiL  399 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAK-YGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDIL  399 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCeEEEECcchHHHHHHHHHHHH-CCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCEE
Confidence            478999999999999998888777 499999887532 22 233445554433332221  1111       12479999


Q ss_pred             EECCCC
Q 025278          219 FDAVGK  224 (255)
Q Consensus       219 id~~G~  224 (255)
                      |++.|-
T Consensus       400 VnNAGi  405 (604)
T 2et6_A          400 VNNAGI  405 (604)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999993

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=95.36  E-value=0.049  Score=43.80  Aligned_cols=63  Identities=24%  Similarity=0.283  Sum_probs=45.4

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHHH-cCCCEEEcCCCccccccCCCccEEEECCC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLRS-LGADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      +|.|+| +|.+|...+..+... | .+|.+.++++++.+.+.+ +|... .+    +..+.. ..|+||-|+.
T Consensus         2 ~i~iiG-~G~mG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~~~~g~~~-~~----~~~~~~-~~D~vi~~v~   66 (263)
T 1yqg_A            2 NVYFLG-GGNMAAAVAGGLVKQ-GGYRIYIANRGAEKRERLEKELGVET-SA----TLPELH-SDDVLILAVK   66 (263)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHH-CSCEEEEECSSHHHHHHHHHHTCCEE-ES----SCCCCC-TTSEEEECSC
T ss_pred             EEEEEC-chHHHHHHHHHHHHC-CCCeEEEECCCHHHHHHHHHhcCCEE-eC----CHHHHh-cCCEEEEEeC
Confidence            688999 899999988777664 7 889999999998887754 57543 21    112223 5677777776

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.36  E-value=0.034  Score=42.87  Aligned_cols=98  Identities=14%  Similarity=0.061  Sum_probs=61.2

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC----CEEEcCCCccccccCCCccEEEECC
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA----DLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      .++++.+||-+| +|. |..+..+++. +..++++++.+++.++.+++.-.    -.++..+..+.....+.+|+|+...
T Consensus        39 ~~~~~~~vLdiG-cG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  115 (215)
T 2pxx_A           39 ELRPEDRILVLG-CGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKG  115 (215)
T ss_dssp             GCCTTCCEEEET-CTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEES
T ss_pred             hcCCCCeEEEEC-CCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECc
Confidence            357889999999 665 8888888876 33489999999999888875421    1222222222211124699999632


Q ss_pred             CC---------------------ccceeeeeeccccCCceEEEEeec
Q 025278          223 GK---------------------MCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       223 G~---------------------~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      .-                     ......+.+.++ ++|++++....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~  161 (215)
T 2pxx_A          116 TLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLV-PGGRFISMTSA  161 (215)
T ss_dssp             HHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred             chhhhccccccccccccchhHHHHHHHHHHHHhCc-CCCEEEEEeCC
Confidence            10                     122333345566 78998887653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=95.35  E-value=0.017  Score=44.05  Aligned_cols=93  Identities=15%  Similarity=0.065  Sum_probs=57.0

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcC---------CcEEEEecChhhHHHHHHcCCCEEE-cCCCccc--c-----
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFG---------ASKVAATSSTAKLDLLRSLGADLAI-DYTKENI--E-----  209 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g---------~~vi~~~~~~~~~~~~~~~g~~~v~-~~~~~~~--~-----  209 (255)
                      .++++++||-+| +|. |..+..+++..+.         .+++++|.++.+.    .-++ ..+ ..+-.+.  .     
T Consensus        19 ~~~~~~~vLDlG-cG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~----~~~~-~~~~~~d~~~~~~~~~~~~   91 (196)
T 2nyu_A           19 ILRPGLRVLDCG-AAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP----LEGA-TFLCPADVTDPRTSQRILE   91 (196)
T ss_dssp             CCCTTCEEEEET-CCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC----CTTC-EEECSCCTTSHHHHHHHHH
T ss_pred             CCCCCCEEEEeC-CCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc----CCCC-eEEEeccCCCHHHHHHHHH
Confidence            468899999999 777 9999999988532         7899999887431    0112 223 2221111  0     


Q ss_pred             cc-CCCccEEEE-----CCCCc------------cceeeeeeccccCCceEEEEee
Q 025278          210 DL-PEKFDVVFD-----AVGKM------------CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       210 ~~-~~~~d~vid-----~~G~~------------~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      .. .+.+|+|+-     ++|..            .....+.+.++ ++|++++.-.
T Consensus        92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~  146 (196)
T 2nyu_A           92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQ-PGGTFLCKTW  146 (196)
T ss_dssp             HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred             hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhc-CCCEEEEEec
Confidence            01 136999994     44432            22333456666 7899987644

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.35  E-value=0.047  Score=45.65  Aligned_cols=72  Identities=19%  Similarity=0.170  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH-HHHHHc-C-C-CEEEcCCCccccccCCCccEEEECCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL-DLLRSL-G-A-DLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~-~~~~~~-g-~-~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      .+++|||+||+|.+|...++.+... |.+|++++++..+. +.++.+ + . -.++..+-.+  ....++|+||.++|.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~d~vih~A~~  101 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMD-GHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE--PLYIEVDQIYHLASP  101 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTS--CCCCCCSEEEECCSC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHC-CCEEEEEeCCCccchhhhhhhccCCceEEEeCccCC--hhhcCCCEEEECccc
Confidence            4678999999999999998888774 89999998754321 111111 1 1 1222221111  123579999999884

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.34  E-value=0.02  Score=47.63  Aligned_cols=67  Identities=24%  Similarity=0.299  Sum_probs=49.8

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      .+|.|+| +|.+|...+..+... |.+|++.++++++.+.+.+.|... .+    +..+..+..|+||.|+..+
T Consensus        31 ~~I~iIG-~G~mG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~g~~~-~~----~~~~~~~~~DvVi~av~~~   97 (316)
T 2uyy_A           31 KKIGFLG-LGLMGSGIVSNLLKM-GHTVTVWNRTAEKCDLFIQEGARL-GR----TPAEVVSTCDITFACVSDP   97 (316)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSGGGGHHHHHTTCEE-CS----CHHHHHHHCSEEEECCSSH
T ss_pred             CeEEEEc-ccHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHcCCEE-cC----CHHHHHhcCCEEEEeCCCH
Confidence            5799999 899999988877774 889999999999888887777532 11    1222224679999998844

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=95.32  E-value=0.074  Score=43.16  Aligned_cols=100  Identities=12%  Similarity=0.051  Sum_probs=63.4

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHh-cCCcEEEEecChhhHHHHHHc-----CCC--EEEcCCCccccccCCCc
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHV-FGASKVAATSSTAKLDLLRSL-----GAD--LAIDYTKENIEDLPEKF  215 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~-~g~~vi~~~~~~~~~~~~~~~-----g~~--~v~~~~~~~~~~~~~~~  215 (255)
                      ....++++++||-.| +| .|..+..+++.+ .+.++++++.+++..+.+++.     |.+  .++..+..+.. ..+.+
T Consensus       104 ~~~~~~~~~~VLD~G-~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~-~~~~f  180 (275)
T 1yb2_A          104 MRCGLRPGMDILEVG-VG-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI-SDQMY  180 (275)
T ss_dssp             --CCCCTTCEEEEEC-CT-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC-CSCCE
T ss_pred             HHcCCCCcCEEEEec-CC-CCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC-cCCCc
Confidence            456788999999998 55 577888888763 368999999999988877542     532  22222211111 12469


Q ss_pred             cEEEECCCCc-cceeeeeeccccCCceEEEEee
Q 025278          216 DVVFDAVGKM-CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       216 d~vid~~G~~-~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      |+|+-..... .....+.+.++ ++|++++...
T Consensus       181 D~Vi~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~  212 (275)
T 1yb2_A          181 DAVIADIPDPWNHVQKIASMMK-PGSVATFYLP  212 (275)
T ss_dssp             EEEEECCSCGGGSHHHHHHTEE-EEEEEEEEES
T ss_pred             cEEEEcCcCHHHHHHHHHHHcC-CCCEEEEEeC
Confidence            9999755433 22333455566 7898887654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.076  Score=43.55  Aligned_cols=99  Identities=12%  Similarity=0.097  Sum_probs=63.2

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHh-cCCcEEEEecChhhHHHHHHc-------CCC-EEEcCCCccccccC-----
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHV-FGASKVAATSSTAKLDLLRSL-------GAD-LAIDYTKENIEDLP-----  212 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~-~g~~vi~~~~~~~~~~~~~~~-------g~~-~v~~~~~~~~~~~~-----  212 (255)
                      ...++.+||=+| +| .|..+..+++.. .+.++++++.++..++.+++.       ... .++..+..+.....     
T Consensus        33 ~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  110 (299)
T 3g5t_A           33 HDGERKLLVDVG-CG-PGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD  110 (299)
T ss_dssp             CCSCCSEEEEET-CT-TTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTT
T ss_pred             hcCCCCEEEEEC-CC-CCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccccc
Confidence            346889999998 55 588999999753 589999999999988887653       111 22222222222222     


Q ss_pred             -CCccEEEECCCC-----ccceeeeeeccccCCceEEEEeec
Q 025278          213 -EKFDVVFDAVGK-----MCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       213 -~~~d~vid~~G~-----~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                       +.+|+|+-...-     ......+.+.++ ++|+++++...
T Consensus       111 ~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~  151 (299)
T 3g5t_A          111 KQKIDMITAVECAHWFDFEKFQRSAYANLR-KDGTIAIWGYA  151 (299)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             CCCeeEEeHhhHHHHhCHHHHHHHHHHhcC-CCcEEEEEecC
Confidence             579999965431     122233355566 78999886554

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.28  E-value=0.017  Score=48.76  Aligned_cols=70  Identities=14%  Similarity=0.157  Sum_probs=49.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      ++|.|+| .|.+|...+..++.. |.+|++.++++++.+.++++|.... +...+.......+.|+||-|+..
T Consensus         9 ~kIgIIG-~G~mG~slA~~L~~~-G~~V~~~dr~~~~~~~a~~~G~~~~-~~~~e~~~~a~~~aDlVilavP~   78 (341)
T 3ktd_A            9 RPVCILG-LGLIGGSLLRDLHAA-NHSVFGYNRSRSGAKSAVDEGFDVS-ADLEATLQRAAAEDALIVLAVPM   78 (341)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHTTCCEE-SCHHHHHHHHHHTTCEEEECSCH
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeee-CCHHHHHHhcccCCCEEEEeCCH
Confidence            5799999 999999988888884 8999999999999999988887432 11100011001135777777663

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=95.26  E-value=0.022  Score=50.63  Aligned_cols=75  Identities=16%  Similarity=0.283  Sum_probs=49.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH---H----HH---------c--CCCEE-EcCCC-ccc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL---L----RS---------L--GADLA-IDYTK-ENI  208 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~---~----~~---------~--g~~~v-~~~~~-~~~  208 (255)
                      .+.++|||+||+|.+|...+..+.. .+.+|+++++++.+.+.   +    +.         .  +...+ .|..+ +.+
T Consensus       148 ~~~~~VLVTGatG~iG~~l~~~L~~-~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  226 (508)
T 4f6l_B          148 RPLGNTLLTGATGFLGAYLIEALQG-YSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  226 (508)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHTBT-TEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred             CCCCeEEEECCccchHHHHHHHHHh-cCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence            3457899999999999998888866 48999999987763211   1    11         1  22111 23333 223


Q ss_pred             cccCCCccEEEECCCCc
Q 025278          209 EDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       209 ~~~~~~~d~vid~~G~~  225 (255)
                      . ...++|+||++.+..
T Consensus       227 ~-~~~~~D~Vih~Aa~~  242 (508)
T 4f6l_B          227 V-LPENMDTIIHAGART  242 (508)
T ss_dssp             C-CSSCCSEEEECCCC-
T ss_pred             C-CccCCCEEEECCcee
Confidence            3 446899999998843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	5e-24
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	9e-24
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	3e-23
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	3e-23
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	2e-21
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	7e-21
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	8e-21
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	3e-19
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	3e-18
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	4e-18
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	5e-18
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	2e-17
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	2e-17
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	2e-17
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	5e-17
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	2e-15
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	3e-15
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	2e-14
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	3e-14
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	4e-13
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	4e-13
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	1e-12
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	2e-12
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	2e-12
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	2e-11
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	6e-11
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	2e-10
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	2e-10
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	1e-09
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	6e-09
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	1e-08
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-08
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	4e-08
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	5e-08
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	5e-08
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	8e-08
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	9e-08
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	2e-07
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	4e-07
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	6e-07
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	9e-07
d1o89a2	177	c.2.1.1 (A:116-292) Hypothetical protein YhdH {Esc	9e-07
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	1e-06
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	2e-06
d1v3va1	147	b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hyd	2e-06
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	2e-06
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	3e-06
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	6e-06
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	7e-06
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-05
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	3e-05
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	2e-04
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	2e-04
d2fr1a1	259	c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI	5e-04
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	0.001
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	0.002
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.003
d1uzma1	237	c.2.1.2 (A:9-245) beta-keto acyl carrier protein r	0.004

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 92.2 bits (228), Expect = 5e-24
 Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 9/158 (5%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            +A+V  +          +T + +  L E  VL++V  +++N  D    L +        
Sbjct: 4   FQAFVVNKTETEF-TAGVQT-ISMDDLPEGDVLVRVHYSSVNYKD---GLASIPDGKIVK 58

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
                  +      V SQ  +F+ GDEV     E         G  +EY  +    L   
Sbjct: 59  TYPFVPGIDLAGVVVSSQHPRFREGDEVIATGYE---IGVTHFGGYSEYARLHGEWLVPL 115

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLG 158
           PK L    A  + LA               G++++ L 
Sbjct: 116 PKGLER-IAQEISLAELPQALKRILRGELRGRTVVRLA 152

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 91.9 bits (227), Expect = 9e-24
 Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 11/170 (6%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            +A   ++  +    +  +T +    L +D VLIKV  +    I++K  L   +  +   
Sbjct: 4   FQALQAEKNADD-VSVHVKT-ISTEDLPKDGVLIKVAYSG---INYKDGLAGKAGGNIVR 58

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
                  +      V S   +F  GDEV     E  +        L+EY +V  + L   
Sbjct: 59  EYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDG---GLSEYASVPGDWLVPL 115

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQL 170
           P+NLS  EA    L T    E        A K IL     G V   +++L
Sbjct: 116 PQNLSLKEAMVDQLLTIVDREVSLEETPGALKDILQNRIQGRV---IVKL 162

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 90.8 bits (224), Expect = 3e-23
 Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 26/179 (14%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP- 59
           + A +YK     Q+ L+ E    +P  +ED+VL+++    +   D         A     
Sbjct: 3   LSAVLYK-----QNDLRLEQ-RPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVK 56

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRN---------------- 103
            P + G++ +G V KVG  VK  K GD V  +                            
Sbjct: 57  DPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATP 116

Query: 104 ---GSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGG 159
              G+LA Y     +     P N +  +  +     E   +  E +   A  +I V+  
Sbjct: 117 PDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMIS 175

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 90.7 bits (224), Expect = 3e-23
 Identities = 45/176 (25%), Positives = 66/176 (37%), Gaps = 25/176 (14%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V   YG   + L+ E  V+VP     QVL+K+ A+ +   D     G +       
Sbjct: 6   MKAAVVHAYG---APLRIEE-VKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPL- 60

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDH-------------------PK 101
           P IPG++  G V  VGS V + K GD V       A                        
Sbjct: 61  PFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYS 120

Query: 102 RNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVL 157
            NG  AEY   + N + + PKN+                + + R+    G+ +L +
Sbjct: 121 VNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM-RAGQIEGRIVLEM 175

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 2e-21
 Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 22/170 (12%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           M+A    E+G  + VLK  +++ VP  ++ QVLIKV A  +NP++     G + +    L
Sbjct: 3   MRAVRVFEFGGPE-VLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTY-SRKPLL 60

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P  PG DVAGV+E VG     FK GD V+             +G  AEY    ++ +   
Sbjct: 61  PYTPGSDVAGVIEAVGDNASAFKKGDRVF--------TSSTISGGYAEYALAADHTVYKL 112

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQL 170
           P+ L  V  +  PL                     ++ G+G  G M++ L
Sbjct: 113 PEKLKPVIGSQYPLEKVAEAHE------------NIIHGSGATGKMILLL 150

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 84.6 bits (208), Expect = 7e-21
 Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 30/181 (16%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAF------S 54
           M+A    E G     L  +  + VP  +  QVLIKV AA +   D     G F       
Sbjct: 1   MRAVRLVEIGKP---LSLQE-IGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVE 56

Query: 55  ATDSPLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPK------------- 101
                LP   G+++AG +E+VG +V  +  GD V  +  +   +                
Sbjct: 57  DLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPR 116

Query: 102 -----RNGSLAEYTAVEENLLALKPKNLSFVEAASLPLAT-ETAYEGLERSAFSAGKSIL 155
                 +G+ AEY  V       K + +  +   ++ L     A + LE    + G+ +L
Sbjct: 117 WLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLEN-FKAIGRQVL 175

Query: 156 V 156
           +
Sbjct: 176 I 176

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 8e-21
 Identities = 41/197 (20%), Positives = 68/197 (34%), Gaps = 46/197 (23%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            KA V  E G     L  E  +EV   +  +V IK++A A+   D   + GA      P+
Sbjct: 7   CKAAVAWEAGKP---LSIEE-IEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-------------------------------- 88
               G+  AG+VE VG  V K K GD V                                
Sbjct: 63  I--LGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120

Query: 89  -------YGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE 141
                        K + H     + +EYT V +  +A     +   E  +  L+ +   +
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINK 180

Query: 142 GLER-SAFSAGKSILVL 157
             E   +  + ++++ +
Sbjct: 181 AFELMHSGKSIRTVVKI 197

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 3e-19
 Identities = 37/182 (20%), Positives = 59/182 (32%), Gaps = 27/182 (14%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFK-RMLGAFSATDSP 59
             + V    G     L+ E N  +P    ++VL+++ +  +   D      G        
Sbjct: 8   NLSLVVHGPG----DLRLE-NYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVK 62

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYG-------------------DINEKALDHP 100
            P + G++ +G VEKVGS VK  K GD V                       +      P
Sbjct: 63  KPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATP 122

Query: 101 KRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGA 160
             +G+L  +           P N+  +     PL    A E  E      G  I++    
Sbjct: 123 PDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLE--KALEAFETFKKGLGLKIMLKCDP 180

Query: 161 GG 162
             
Sbjct: 181 SD 182

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.3 bits (189), Expect = 3e-18
 Identities = 42/177 (23%), Positives = 64/177 (36%), Gaps = 27/177 (15%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKA V +++      LK +  VE P++   +VL+++ A  +   D              L
Sbjct: 1   MKAAVVEQFK---EPLKIK-EVEKPTISYGEVLVRIKACGVCHTDLHAA-HGDWPVKPKL 55

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-------------------YGDINEKALDHPK 101
           P IPG++  G+VE+VG  V   KVGD V                         +      
Sbjct: 56  PLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYS 115

Query: 102 RNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLG 158
            +G  AEY     + +   P N    E   L    E     L+      G+ +L L 
Sbjct: 116 VDGGYAEYCRAAADYVVKIPDNTII-EVQPLEKINEVFDRMLK--GQINGRVVLTLE 169

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 77.1 bits (188), Expect = 4e-18
 Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 6/173 (3%)

Query: 1   MKAWVYKEYGNSQSVLKFET-NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSP 59
            +A +Y ++G  + VL  ++  ++  +L  ++V++K + + +NP D  ++ G + +  + 
Sbjct: 4   AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63

Query: 60  LPTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLAL 119
                  + A      G         +    +  +  +      G+   +    ++    
Sbjct: 64  TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 123

Query: 120 KPKNLSFVEAASLPLATETAYEGL--ERSAFSAGKSILVLGGA-GGVGTMVIQ 169
            P        A+      T  + +            +   G A    G  +I 
Sbjct: 124 LPNP--AQSKANGKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 174

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 76.1 bits (186), Expect = 5e-18
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           ++A + ++    +++   +T ++   L E  V + V  ++LN  D    +          
Sbjct: 1   LQALLLEQQD-GKTLASVQT-LDESRLPEGDVTVDVHWSSLNYKDA-LAITGKGKIIRNF 57

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
           P IPG D AG V    S+  +F  G EV   +           G LAE   V+ + L   
Sbjct: 58  PMIPGIDFAGTVRT--SEDPRFHAGQEV---LLTGWGVGENHWGGLAEQARVKGDWLVAM 112

Query: 121 PKNLSFVEAASLPLATETA 139
           P+  +  E +         
Sbjct: 113 PQGQAAKEISLSEAPNFAE 131

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 74.1 bits (181), Expect = 2e-17
 Identities = 37/157 (23%), Positives = 52/157 (33%), Gaps = 26/157 (16%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MKAWV K  G    +     ++  P   E +V+++V A  LN  D    LGA+     P 
Sbjct: 1   MKAWVLKRLGGPLEL----VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPP 56

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALK 120
                          G +V     G      +           G LAE  AV +  L   
Sbjct: 57  FIP------------GMEVVGVVEGRRYAALVP---------QGGLAERVAVPKGALLPL 95

Query: 121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVL 157
           P+    V         E A+  L       GK ++ L
Sbjct: 96  PEGRPVVGPVFPFAEAEAAFRALLDRG-HTGKVVVRL 131

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 75.7 bits (185), Expect = 2e-17
 Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 46/197 (23%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            KA V  E       L  E  +EV     +++ IK++A  +   D   +           
Sbjct: 9   CKAAVAWEANKP---LVIEE-IEVDVPHANEIRIKIIATGVCHTDLYHL--FEGKHKDGF 62

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYG------------------------------ 90
           P + G++ AG+VE VG  V +F+ G++V                                
Sbjct: 63  PVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPD 122

Query: 91  ---------DINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE 141
                        + +       + ++YT V +  +A    ++   E  +  +  E+  +
Sbjct: 123 VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVND 182

Query: 142 GLERSA-FSAGKSILVL 157
            ++        +++L L
Sbjct: 183 AIDLMKHGKCIRTVLSL 199

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.6 bits (185), Expect = 2e-17
 Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 31/183 (16%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            +    + + + ++  K +   +     +  + IK+ A  +   D     G +   +  +
Sbjct: 7   FEGIAIQSHEDWKNPKKTK--YDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWG--NMKM 62

Query: 61  PTIPGYDVAGVVEKVGSQVKK-FKVGD--------------------------EVYGDIN 93
           P + G+++ G V K+G +     KVG                           +     +
Sbjct: 63  PLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYS 122

Query: 94  EKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKS 153
           +   D     G  A Y  V E+ +   P+N+              A+E +E+       +
Sbjct: 123 QPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEKGDVRYRFT 182

Query: 154 ILV 156
           ++ 
Sbjct: 183 LVG 185

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 74.9 bits (183), Expect = 5e-17
 Identities = 42/201 (20%), Positives = 67/201 (33%), Gaps = 52/201 (25%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            KA +  + G+    L  E  +EV   +  +V I+V+A  + P D         A     
Sbjct: 9   CKAAIAWKTGSP---LCIEE-IEVSPPKACEVRIQVIATCVCPTDINATDPKKKALF--- 61

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYG------------------------------ 90
           P + G++ AG+VE VG  V  FK GD+V                                
Sbjct: 62  PVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPT 121

Query: 91  -------------DINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATE 137
                            +++ H     S ++YT V E  LA            +  L  E
Sbjct: 122 IDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFE 181

Query: 138 TAYEGLERSAFSAGKSILVLG 158
           +  + ++      GKSI  + 
Sbjct: 182 SINDAID--LMKEGKSIRTIL 200

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 70.4 bits (171), Expect = 2e-15
 Identities = 34/224 (15%), Positives = 60/224 (26%), Gaps = 73/224 (32%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           + A V    G      + +  +++   + D+VL+KVVA  +   D       +     PL
Sbjct: 4   IIAAVTPCKGAD---FELQA-LKIRQPQGDEVLVKVVATGMCHTDLIVRDQKY---PVPL 56

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-------------------------------- 88
           P + G++ +G++E +G  V + +VGD V                                
Sbjct: 57  PAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGA 116

Query: 89  --------YGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY 140
                            DH     S A Y    EN      K+  F +            
Sbjct: 117 DSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLV---------- 166

Query: 141 EGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS 184
                                 +    I   K +     +   +
Sbjct: 167 ---------------KFYAFDEINQAAIDSRKGI-TLKPIIKIA 194

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 69.9 bits (170), Expect = 3e-15
 Identities = 33/207 (15%), Positives = 49/207 (23%), Gaps = 37/207 (17%)

Query: 1   MKAWVYKEYGNS--QSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDS 58
            +  VY   G    Q +   +         E  V++KVV+  +   D   + G  +A   
Sbjct: 2   NRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVG 61

Query: 59  ---------------PLPTIPGYDVAGVVE-----------KVGSQVKKFKVGDEVYGDI 92
                                       V            K         V     G  
Sbjct: 62  LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGA 121

Query: 93  NEKALDHPKRNGSLAEYTAV--EENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSA 150
                      G  AEY  V   +  L   P     +E  ++          L+ +    
Sbjct: 122 YGYVDMGDWTGG-QAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDDAPRGY 180

Query: 151 GKSILVLGGAGGVGTMVIQLAKHVFGA 177
           G+       AG     VI   K  F A
Sbjct: 181 GE-----FDAGVPKKFVIDPHKT-FSA 201

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 68.0 bits (165), Expect = 2e-14
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 48/197 (24%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            KA V  E          E  VEV   +  +V IK+VA  +   D   + G       PL
Sbjct: 9   CKAAVLWEEKKP---FSIEE-VEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT---PL 61

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINE-------------------------- 94
           P I G++ AG+VE +G  V   + GD+V                                
Sbjct: 62  PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRG 121

Query: 95  -------------KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE 141
                        K + H     + ++YT V+E  +A      +     +  L  E   E
Sbjct: 122 TMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEKINE 181

Query: 142 GLERSAFSAGKSILVLG 158
           G       +G+SI  + 
Sbjct: 182 GF--DLLRSGESIRTIL 196

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 67.2 bits (163), Expect = 3e-14
 Identities = 38/206 (18%), Positives = 61/206 (29%), Gaps = 56/206 (27%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
            KA V  E       L  ET + V   +  +V IK++A+ +   D   +        S  
Sbjct: 9   CKAAVAWEPHKP---LSLET-ITVAPPKAHEVRIKILASGICGSDSSVL---KEIIPSKF 61

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV-------------------------------- 88
           P I G++  GVVE +G+ V   K GD+V                                
Sbjct: 62  PVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTG 121

Query: 89  -------YGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE 141
                        K + +     +  EYT V +  +A     ++                
Sbjct: 122 LMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKIN---------VNFLVST 172

Query: 142 GLERSAFSAGKSILVLGGAGGVGTMV 167
            L     +    +L   G G    M+
Sbjct: 173 KLTLDQINKAFELLSS-GQGVRSIMI 197

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 63.5 bits (153), Expect = 4e-13
 Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 25/175 (14%)

Query: 2   KAWVYKEYGNSQSVLKFETNVEVPSLR-EDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           KA    EY      L+ E +V+ P L     V++++  A +   D   + G +     P 
Sbjct: 1   KAARLHEYNKP---LRIE-DVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPK 56

Query: 61  PTIPGYDVAGV-VEKVGSQVKKFKVGDEVYGDINEKALDHP------------------K 101
                       +E+V   V+  + GD V                               
Sbjct: 57  LPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLN 116

Query: 102 RNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILV 156
            +G  AE+       +   PK++                E LE+     G+++L+
Sbjct: 117 IDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLEK-GEVLGRAVLI 170

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 63.8 bits (154), Expect = 4e-13
 Identities = 34/195 (17%), Positives = 61/195 (31%), Gaps = 43/195 (22%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           MK +           L +    E P       +++ +A +    D   +     A     
Sbjct: 1   MKGFAMLGINK----LGWIE-KERPVAGSYDAIVRPLAVSPCTSDIHTV--FEGALGDRK 53

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALD---------------------H 99
             I G++  G V +VGS+VK FK GD V                                
Sbjct: 54  NMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFS 113

Query: 100 PKRNGSLAEYTAV---EENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILV 156
             ++G   EY  V   + NL  L PK++   +  +        Y G +       +++L+
Sbjct: 114 NFKDGVFGEYFHVNDADMNLAIL-PKDVDLSKLVT------HVYHGFDH----IEEALLL 162

Query: 157 LGGAGGVGTMVIQLA 171
           +        +   + 
Sbjct: 163 M-KDKPKDLIKAVVI 176

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 16/138 (11%)

Query: 124 LSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA 182
           L+  + A++ +   TAY  L      + GK   +  G              +   + ++ 
Sbjct: 1   LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISV 60

Query: 183 TSSTAKLDLL----RSLGADLAIDYTKENIEDLPEKF-----------DVVFDAVGKMCI 227
                 LD +    + LGA   I   + N  +                 +  + VG    
Sbjct: 61  IRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSS 120

Query: 228 SIVYQKCDKFQEKSLINF 245
           + + +K +          
Sbjct: 121 TGIARKLNNNGLMLTYGG 138

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 26/190 (13%), Positives = 60/190 (31%), Gaps = 47/190 (24%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
             A V +++      L ++   E+  +    +L+++++A +   D     G       P+
Sbjct: 5   AHAMVLEKFNQP---LVYK-EFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPI 60

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGD---------------------------------E 87
                ++ AG V +V  + +                                       +
Sbjct: 61  ILG--HEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRK 118

Query: 88  VYGDINEKALDHPKRNGSLAEYTAV-EENLLALKPKNLSFVEAASLPLATETAYEGLERS 146
           VYG IN    ++P   G  + +  +  E  +    + ++       PL    A + LE  
Sbjct: 119 VYG-INRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHRL----PLKE--ANKALELM 171

Query: 147 AFSAGKSILV 156
                  +++
Sbjct: 172 ESREALKVIL 181

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 60.8 bits (146), Expect = 2e-12
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 14/157 (8%)

Query: 2   KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLP 61
               + ++G    VL+           E+++ ++  A  +N ID     G +      LP
Sbjct: 2   TRIEFHKHGGP-EVLQAV-EFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPP--SLP 57

Query: 62  TIPGYDVAGVVEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKP 121
           +  G + AG+V KVGS VK  K GD V               G+ +    +  +  A+ P
Sbjct: 58  SGLGTEAAGIVSKVGSGVKHIKAGDRVVY--------AQSALGAYSSVHNIIADKAAILP 109

Query: 122 KNL--SFVEAASLPLATETAYEGLERSAFSAGKSILV 156
             +     E    PL        +  S  + G S+L+
Sbjct: 110 AAIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLI 146

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 56.5 bits (136), Expect = 2e-11
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 124 LSFVEAASLPLATETAYEGL----ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           L   +A  +  A  TA   +    +         I+V G +GGVG+  + L     G   
Sbjct: 1   LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHK-LGYQV 59

Query: 180 VAATSSTAKLDLLRSLGA 197
           VA +   +  + L+SLGA
Sbjct: 60  VAVSGRESTHEYLKSLGA 77

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 57.4 bits (137), Expect = 6e-11
 Identities = 27/114 (23%), Positives = 54/114 (47%)

Query: 124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT 183
           L+ VEAA L  +  T Y  + +++    K++LV+G  GG+GTM +Q+AK V GA+ +   
Sbjct: 1   LNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVD 60

Query: 184 SSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKF 237
                ++  +  GAD  I+ + ++      +          + ++   +    +
Sbjct: 61  VREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVY 114

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 124 LSFVEAASLPLATETAYEGL----ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           L+  EA ++  A  TA   +    E         +LV G  GGVG++ + +     G + 
Sbjct: 1   LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAK-RGYTV 59

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIEDLPE----KFDVVFDAVGKMCISIVYQKC 234
            A+T   A+ D LR LGA   +       E +      ++    D VG   ++ V  + 
Sbjct: 60  EASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRM 118

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 128 EAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA 187
           +   L     T Y G   +    G ++ V  GAG VG      A+ +  A  +    + A
Sbjct: 3   DLTCLSDILPTGYHGAVTAGVGPGSTVYVA-GAGPVGLAAAASARLLGAAVVIVGDLNPA 61

Query: 188 KLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAVGKMC 226
           +L   ++ G ++A       + +         + D   DAVG   
Sbjct: 62  RLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEA 106

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 124 LSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA 182
           +SF +AA+  L   T Y  L ++      +  L    AGGVG +  Q AK   GA  +  
Sbjct: 1   ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKA-LGAKLIGT 59

Query: 183 TSSTAKLDLLRSLGADLAIDYTKENIEDL------PEKFDVVFDAV 222
             +  K       GA   I+Y +E++ +        +K  VV+D+V
Sbjct: 60  VGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSV 105

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 51.9 bits (123), Expect = 6e-09
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 123 NLSFVEAASLPLATETAYEGLERSAFS-AGKSILVLGGAGGVGTMVIQLAKHVFGASKVA 181
               VE A L  A  TAY  ++++A +    + + + G GG+G + +QL K +  A+ +A
Sbjct: 3   REKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIA 62

Query: 182 ATSSTAKLDLLRSLGADLAIDYTKENIEDL-----PEKFDVVFDAVGKMCISIVYQKC 234
                 KL L   LGAD  +D  ++ ++ +         +V  D VG           
Sbjct: 63  LDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYL 120

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 20/106 (18%), Positives = 30/106 (28%), Gaps = 9/106 (8%)

Query: 126 FVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS 184
             +   L     T Y     +A    G    V G  G     VI   K    +  +    
Sbjct: 3   LDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGL-AVIMGCKVAGASRIIGVDI 61

Query: 185 STAKLDLLRSLGADLAIDYTKEN-------IEDLPEKFDVVFDAVG 223
           +  K    +  GA   I+    +       IE      D  F+ +G
Sbjct: 62  NKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 107

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 49.9 bits (118), Expect = 3e-08
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 127 VEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS 185
           +E+  +     T Y     +A  + G +  V G  GGVG   I   K    +  +   + 
Sbjct: 3   LESCLIGCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTH 61

Query: 186 TAKLDLLRSLGADLAIDYTKEN 207
             K      LGA   ++    +
Sbjct: 62  KDKFPKAIELGATECLNPKDYD 83

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT 183
                 A L  A  T Y  L       GK + V+ G GG+G M I+   H  GA  VA T
Sbjct: 4   EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVV-GIGGLGHMGIK-LAHAMGAHVVAFT 61

Query: 184 SSTAKLDLLRSLGADLAIDYTKEN-IEDLPEKFDVVFDAV 222
           +S AK +  ++LGAD  ++    + +    + FD + + V
Sbjct: 62  TSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV 101

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 49.1 bits (116), Expect = 5e-08
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 7/106 (6%)

Query: 124 LSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA 182
           +       L    +T       +   +   S +   GAG VG   +  AK    +  +A 
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVT-WGAGAVGLSALLAAKVCGASIIIAV 59

Query: 183 TSSTAKLDLLRSLGADLAIDYTKENIED-----LPEKFDVVFDAVG 223
               ++L+L + LGA   I+   ++             +   ++ G
Sbjct: 60  DIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 105

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 49.2 bits (116), Expect = 5e-08
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 138 TAYEGL----ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR 193
           TA   +    +        S+LV G  GGVG + + +     G   VA+T +    D L+
Sbjct: 7   TAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNK-RGYDVVASTGNREAADYLK 65

Query: 194 SLGADLAIDYT----KENIEDLPEKFDVVFDAVGKMCISIVYQKC 234
            LGA   I               +++    D VG   ++ +  K 
Sbjct: 66  QLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKI 110

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 8e-08
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 125 SFVEAASL-PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT 183
           +F E A + PL+         R   + G  +LV  GAG +G + + +AK +  A  V   
Sbjct: 2   TFEEGALIEPLSV--GIHACRRGGVTLGHKVLVC-GAGPIGMVTLLVAKAMGAAQVVVTD 58

Query: 184 SSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLI 243
            S  +L   + +GADL +  +KE+ +++  K +       ++ I     +          
Sbjct: 59  LSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYAT 118

Query: 244 NFG 246
             G
Sbjct: 119 RSG 121

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 48.4 bits (114), Expect = 9e-08
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 9/117 (7%)

Query: 126 FVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS 184
             +   +     T Y    + A  + G +  V G  GGVG  VI   K    A  +    
Sbjct: 3   LEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVDI 61

Query: 185 STAKLDLLRSLGADLAIDYTKE-------NIEDLPEKFDVVFDAVGKMCISIVYQKC 234
           +  K    + +GA   ++             E      D  F+ +G++   +    C
Sbjct: 62  NKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSC 118

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 34/170 (20%)

Query: 1   MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPL 60
           +KA            L+    +       + V I++    +   D  ++   +    +  
Sbjct: 1   IKAVGAYSAK---QPLEPMD-ITRREPGPNDVKIEIAYCGVCHSDLHQVRSEW--AGTVY 54

Query: 61  PTIPGYDVAGVVEKVGSQVKKFKVGDEV--------------------------YGDINE 94
           P +PG+++ G V  VG QV+K+  GD V                           G  N 
Sbjct: 55  PCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNS 114

Query: 95  KALDHP-KRNGSLAEYTAV-EENLLALKPKNLSFVEAASLPLATETAYEG 142
              D P    G  ++   V E  +L ++  ++  + A  +  A E    G
Sbjct: 115 PTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRG 164

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKH 173
           + F E A +  A  T Y+GL+++    G+ + +  G GG+G + +Q A+ 
Sbjct: 1   VEFAEIAPILCAGVTVYKGLKQTNARPGQWVAI-SGIGGLGHVAVQYARA 49

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 12/126 (9%)

Query: 123 NLSFVEAASLPLATETAYEGL-ERSAFSAGK--SILVLGGAGGVGTMVIQLAKHVFGASK 179
           +LS+   A + +   T+  G+ E+   SAG   +++V G AG  G++  Q+     G S+
Sbjct: 1   HLSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHL-LGCSR 58

Query: 180 VAATSSTAK--LDLLRSLGADLAIDYTKENIEDLPEK-----FDVVFDAVGKMCISIVYQ 232
           V     T +  L L   LG D A++Y   N+ +   +      DV FD VG    + V  
Sbjct: 59  VVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVIS 118

Query: 233 KCDKFQ 238
           + ++  
Sbjct: 119 QMNENS 124

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 45.8 bits (107), Expect = 9e-07
 Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 9/106 (8%)

Query: 126 FVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS 184
                 L     T +     +A    G +  V G        V+           +A   
Sbjct: 3   LDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAK-RIIAVDL 61

Query: 185 STAKLDLLRSLGADLAIDYTKEN-------IEDLPEKFDVVFDAVG 223
           +  K +  +  GA   ++    +        +      D   + VG
Sbjct: 62  NPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 107

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (107), Expect = 9e-07
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 124 LSFVEAASLPLATETAYEGL----ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK 179
           L   +A  +  A  TA   +    +         I+V G +GGVG+  + L     G   
Sbjct: 1   LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHK-LGYQV 59

Query: 180 VAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEK--FDVVFDAVGKMCISIVYQKC 234
           VA +   +  + L+SLGA   +   +       EK  +    D VG   ++ V  + 
Sbjct: 60  VAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDKVLAKVLAQM 116

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT 183
           +    A  +     T + G E +    G S++V+ G G VG M I  AK       +   
Sbjct: 1   MPLENAVMITDMMTTGFHGAELADIEMGSSVVVI-GIGAVGLMGIAGAKLRGAGRIIGVG 59

Query: 184 SSTAKLDLLRSLGADLAIDYTKENIED------LPEKFDVVFDAVG 223
           S    ++  +  GA   ++Y   +IED        +  D V  A G
Sbjct: 60  SRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGG 105

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 124 LSFVEAASLPLATETAYEGLERSAFSAGKSILV 156
           LS  EAA+ P++  TAY  L+R+    G+ +LV
Sbjct: 1   LSPEEAAAFPVSFLTAYLALKRAQARPGEKVLV 33

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

Query: 2  KAWVYKEYGN---SQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDS 58
          K+W  K++     +QS  + +T VE+P L+  +VL++ +  +++P               
Sbjct: 5  KSWTLKKHFQGKPTQSDFELKT-VELPPLKNGEVLLEALFLSVDPYMRIAS-----KRLK 58

Query: 59 PLPTIPGYDVAGVVEKVGSQVKKFKVGDEVYG 90
              + G  VA VVE   S+   F  G  V  
Sbjct: 59 EGAVMMGQQVARVVE---SKNSAFPAGSIVLA 87

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT 183
           +    AA L     T Y  L R+    GK + ++ G GG+G+M   ++K   GA     +
Sbjct: 1   IPSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIV-GLGGIGSMGTLISKA-MGAETYVIS 58

Query: 184 SSTAKLDLLRSLGADLAIDYTK--ENIEDLPEKFDVVFDAVGKMCISIVYQKCD 235
            S+ K +    +GAD  I   +  +  E   + FD++      +          
Sbjct: 59  RSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPK 112

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 128 EAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST 186
           EAA+  +A  TA+  L      S G+ +L+    GGVG   + +AK +       A S  
Sbjct: 2   EAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA 61

Query: 187 AKLDLLRSLGADLAIDYTKENIED------LPEKFDVVFDAVGKMCISIVYQKCDKFQEK 240
            + ++L  LG +   D    +  D           DVV +++    I    Q        
Sbjct: 62  KR-EMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRF 120

Query: 241 SLI 243
             +
Sbjct: 121 IEL 123

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 43.2 bits (100), Expect = 6e-06
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKH 173
           LSF EAA +  A  T Y+ L+ +    G+ + + G  G     V      
Sbjct: 1   LSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAM 50

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 125 SFVEAASL-PLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT 183
           S  E A L PL+         R+    G ++LV  GAG +G + +  AK       V   
Sbjct: 2   SLEEGALLEPLSV--GVHACRRAGVQLGTTVLV-IGAGPIGLVSVLAAKAYGA-FVVCTA 57

Query: 184 SSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKS 241
            S  +L++ ++ GAD+ +       E+      +         ++I     +K     
Sbjct: 58  RSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIG 115

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 126 FVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS 184
             +   +     T Y    ++     G + +V G  GGVG  VI   K    +  +    
Sbjct: 4   PEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDL 62

Query: 185 STAKLDLLRSLGADLAIDYTKEN-------IEDLPEKFDVVFDAVGKMCISIVYQKCDKF 237
           +  K +   ++GA   I              E         F+ +G +   I        
Sbjct: 63  NKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHM 122

Query: 238 QEKSLINFGL 247
              + +  G+
Sbjct: 123 NYGTSVVVGV 132

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 124 LSFVEAASLPLATETAYEGLERSA-FSAGKSILV 156
           L F + A++ +   TAY  L  SA   AG+S+LV
Sbjct: 1   LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLV 34

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 128 EAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST 186
               +     + Y     +A  + G +  V G  G VG   I   K    +  +A   + 
Sbjct: 5   RVCLIGCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDING 63

Query: 187 AKLDLLRSLGADLAIDYTKEN 207
            K    ++LGA   ++  + +
Sbjct: 64  EKFPKAKALGATDCLNPRELD 84

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 129 AASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA 187
             ++ +   TAY GL        G+++LV   AG VG++V Q+AK   G   V A  S  
Sbjct: 7   LGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKL-KGCKVVGAAGSDE 65

Query: 188 KLDLLRSLGADLAIDYTKENIED------LPEKFDVVFDAVGKMCISIVYQKCDKF 237
           K+  L+ +G D A +Y   N  +       P+ +D  FD VG   ++ V  +   F
Sbjct: 66  KIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDF 121

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 148 FSAGKSILVLGGAGGVG-TMVIQLAKHVFGASKVAATS-STAKLDLLRSLGADLA 200
           +    ++LV GG GGVG  +   LA+   GA  +   S S    D    L A+L 
Sbjct: 6   WKPTGTVLVTGGTGGVGGQIARWLARR--GAPHLLLVSRSGPDADGAGELVAELE 58

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 129 AASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQ 169
            A    +  TAY   +      AGK++++ G AG +G   + 
Sbjct: 6   LAMAMCSGATAYHAFDEYPESFAGKTVVIQG-AGPLGLFGVV 46

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 143 LERSAFSAGKSILVLGGAGGVGT-MVIQLAKHVFGASKVAATSSTAKLD-LLRSLGADLA 200
           ++ +    G  +LV G  G V + +V QL +H  G        S +KL  L +   A   
Sbjct: 3   IDNAVLPEGSLVLVTGANGFVASHVVEQLLEH--GYKVRGTARSASKLANLQKRWDAKYP 60

Query: 201 IDYTKENIEDLPEKFDVVFDAVGKMCISIVYQKCD 235
             +    +ED+ ++        G   ++ +     
Sbjct: 61  GRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVS 95

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 13/80 (16%)

Query: 151 GKSILVLGGAGGVG-TMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE 209
            K +LVL  + G+G  +   L++   GA +V   +     +LL+  G           + 
Sbjct: 4   DKGVLVLAASRGIGRAVADVLSQE--GA-EVTICARNE--ELLKRSGHRYV-------VC 51

Query: 210 DLPEKFDVVFDAVGKMCISI 229
           DL +  D++F+ V ++ I +
Sbjct: 52  DLRKDLDLLFEKVKEVDILV 71

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 6/97 (6%)

Query: 150 AGKSILVLGGAGGVG-TMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENI 208
             +S+LV GG  G+G  +  +LA    G         +     L  +  D+      + +
Sbjct: 6   VSRSVLVTGGNRGIGLAIAQRLAAD--GHKVAVTHRGSGAPKGLFGVEVDVT---DSDAV 60

Query: 209 EDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINF 245
           +      +     V  +  +            +   F
Sbjct: 61  DRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKF 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.98
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.97
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.97
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.97
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.97
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.97
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.97
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.97
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.97
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.97
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.97
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.96
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.96
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.96
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.96
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.96
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.95
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.95
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.95
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.95
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.95
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.95
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.91
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.9
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.9
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.9
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.89
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.89
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.89
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.88
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.88
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.88
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.87
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.87
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.87
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.87
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.86
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.86
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.85
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.85
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.85
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.85
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.85
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.84
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.84
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.84
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.83
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.83
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.8
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.79
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.74
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.74
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.6
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.13
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.97
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.91
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.88
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.86
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.84
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.83
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.82
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.76
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.72
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.71
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.71
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.7
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.7
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.69
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.68
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.67
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.65
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.65
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.62
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.62
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.6
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.6
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.6
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.6
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.59
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.59
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.59
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.59
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.56
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.52
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.52
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.52
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.51
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.5
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.48
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.48
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.48
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.48
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.47
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.46
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.46
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.45
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.44
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.41
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.41
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.4
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.37
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.35
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.35
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.35
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.35
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.32
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.23
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.21
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.2
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.2
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.2
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.17
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.15
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.12
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.11
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.08
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.04
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.0
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.98
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.96
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.95
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.91
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.9
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.89
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	96.87
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.86
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.85
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.85
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.83
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.83
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.81
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.8
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.78
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.75
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.7
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.69
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.68
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.66
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.63
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.63
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.5
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.5
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.45
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.43
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.41
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	96.38
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.34
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.33
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.29
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.28
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.25
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.21
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.21
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.21
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.1
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.04
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.98
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.95
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.89
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.89
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	95.81
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	95.76
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.75
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.71
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.71
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.7
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.54
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.53
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.45
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.45
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.41
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.32
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.24
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.23
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	95.22
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.15
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.1
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	95.09
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.07
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	95.04
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	95.03
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.83
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.79
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.78
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.73
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.71
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.7
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.68
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.65
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	94.64
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.64
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	94.64
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.61
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.59
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.57
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	94.56
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.45
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.41
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.37
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.32
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	94.26
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.24
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.17
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	94.15
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	94.15
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.11
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.02
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.02
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.97
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	93.93
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	93.92
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.9
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	93.89
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.88
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.86
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.85
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	93.81
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.79
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.74
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.74
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.72
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.71
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	93.68
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.64
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.55
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.54
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.51
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.51
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.46
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.38
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.34
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	93.31
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.13
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.13
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	93.12
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.11
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.1
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	93.0
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.91
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	92.9
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	92.89
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	92.83
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	92.79
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.54
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	92.54
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.53
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	92.4
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.25
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.22
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.15
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.11
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.06
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	91.86
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	91.85
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.84
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	91.72
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.68
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.55
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	91.37
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.06
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	91.05
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.99
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	90.77
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	90.71
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	90.67
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.61
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	90.5
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	90.49
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	90.29
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	90.26
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.19
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	90.18
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	90.08
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	90.01
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	89.91
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	89.9
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	89.83
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.76
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	89.7
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	89.67
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	89.66
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	89.57
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.51
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.35
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	89.34
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	89.14
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.12
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	89.08
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	88.9
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	88.82
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	88.76
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	88.75
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	88.69
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	88.5
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.42
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	88.41
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.4
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	88.37
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	88.34
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	88.32
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.28
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	88.14
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	88.1
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	87.99
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.93
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.88
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	87.88
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	87.8
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.69
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.67
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	87.57
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	87.32
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	87.3
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	87.16
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	87.12
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	87.11
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	86.96
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	86.87
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	86.79
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	86.55
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.54
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.44
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	86.19
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	86.14
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	86.11
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	86.05
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	85.89
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.76
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	85.72
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.53
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	85.28
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	85.24
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	85.2
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	85.17
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	85.16
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	85.05
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	84.96
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	84.75
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	84.69
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	84.67
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	84.42
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.35
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	84.33
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	83.8
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	83.66
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.66
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	83.59
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	83.47
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	83.45
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	83.4
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.29
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	83.29
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.21
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	83.14
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	83.04
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	82.85
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	82.83
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.82
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	82.78
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	82.75
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.42
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	82.38
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	82.28
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	81.84
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	81.79
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	81.54
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	81.53
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.34
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	81.22
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	81.09
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	80.95
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	80.65
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	80.55
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	80.32
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	80.03
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	80.02

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-33  Score=210.84  Aligned_cols=147  Identities=35%  Similarity=0.523  Sum_probs=133.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++++|++ +++++++|.+.|+|++|||+||+.+++||++|++.++|.++ ....+|.++|||++|+|+++|++++
T Consensus         3 MkAv~~~~~G~p-~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~-~~~~~p~i~G~e~~G~V~~vG~~v~   80 (150)
T d1yb5a1           3 MRAVRVFEFGGP-EVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYS-RKPLLPYTPGSDVAGVIEAVGDNAS   80 (150)
T ss_dssp             EEEEEESSCSSG-GGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSS-CCCCSSBCCCSCEEEEEEEECTTCT
T ss_pred             eeEEEEEccCCc-ceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcC-ccccccccCccceeeeeEeecceee
Confidence            999999999988 78898757899999999999999999999999999999875 3457889999999999999999999


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEE
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVL  157 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~  157 (255)
                      +|++||||++..        ...|+|+||++++.+.++++|+++++++|+.++++.+|+|+++ .......|+++||+
T Consensus        81 ~~~vGdrV~~~~--------~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          81 AFKKGDRVFTSS--------TISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TCCTTCEEEESC--------CSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             ccccCccccccc--------cccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            999999998865        2469999999999999999999999999999999999999987 56778999999874

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=3e-33  Score=216.88  Aligned_cols=155  Identities=22%  Similarity=0.278  Sum_probs=131.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCC-CCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAF-SATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |.|+|+.++++    |+++ |++.|+|+++||+||+++++||++|++++++.. +....+.|.++|||++|+|+++|+++
T Consensus         2 ~maAVl~g~~~----l~~~-e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v   76 (178)
T d1e3ja1           2 NLSAVLYKQND----LRLE-QRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNV   76 (178)
T ss_dssp             CEEEEEEETTE----EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTC
T ss_pred             ceEEEEEcCCc----EEEE-EeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCccc
Confidence            34555666665    5999 899999999999999999999999999887643 33345678999999999999999999


Q ss_pred             CCCCCCCEEEeccCcc-------------------ccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHH
Q 025278           80 KKFKVGDEVYGDINEK-------------------ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY  140 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~-------------------~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~  140 (255)
                      ++|++||||+..+...                   ...+...+|+|+||+++|.+.++++|+++++++++.+++++.|+|
T Consensus        77 ~~~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~  156 (178)
T d1e3ja1          77 KHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTV  156 (178)
T ss_dssp             CSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHH
T ss_pred             CCCCCCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHH
Confidence            9999999998754211                   011234579999999999999999999999999999989999999


Q ss_pred             HHHHhcccCCCCEEEEEcCC
Q 025278          141 EGLERSAFSAGKSILVLGGA  160 (255)
Q Consensus       141 ~~l~~~~~~~g~~VlI~ga~  160 (255)
                      ++++.+++++|++|+|+||+
T Consensus       157 ~a~~~~~~~~g~~VlVig~C  176 (178)
T d1e3ja1         157 DAFEAARKKADNTIKVMISC  176 (178)
T ss_dssp             HHHHHHHHCCTTCSEEEEEC
T ss_pred             HHHHHhCCCCCCEEEEEccc
Confidence            99999999999999999965

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.98  E-value=6.2e-32  Score=208.83  Aligned_cols=151  Identities=30%  Similarity=0.418  Sum_probs=130.5

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++++|++   ++++ |+|.|+|+++||+||+.+++||++|++.++|.++ ....+|.++|||++|+|+++|++++
T Consensus         6 MkA~v~~~~g~p---l~l~-evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~-~~~~~P~i~GhE~~G~V~~~G~~v~   80 (175)
T d1llua1           6 MKAAVVHAYGAP---LRIE-EVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWP-VKPPLPFIPGHEGVGYVAAVGSGVT   80 (175)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSS-SCCCSSBCCCSCEEEEEEEECTTCC
T ss_pred             cEEEEEEeCCCC---CEEE-EeECCCCCCCEEEEEEEEecCcccchhhhccCcc-ccccCCcCCCCcceEEEEEeCCCcc
Confidence            999999999876   6888 8999999999999999999999999999999875 3457899999999999999999999


Q ss_pred             CCCCCCEEEeccC-------------------ccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDIN-------------------EKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~~-------------------~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      ++++||||...+.                   .....+...+|+|+||++++.+.++++|++++++.++.+..++.|+++
T Consensus        81 ~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t~~~  160 (175)
T d1llua1          81 RVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILD  160 (175)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHHHHHH
T ss_pred             ccccCCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHHHHHhHHHHHHH
Confidence            9999999976421                   111234456789999999999999999999998878878888888998


Q ss_pred             HHHhcccCCCCEEEEE
Q 025278          142 GLERSAFSAGKSILVL  157 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~  157 (255)
                      .++...+ +|++|||+
T Consensus       161 ~~~~g~~-~G~~VLVl  175 (175)
T d1llua1         161 QMRAGQI-EGRIVLEM  175 (175)
T ss_dssp             HHHTTCC-SSEEEEEC
T ss_pred             HHHhCCC-CCCEEEeC
Confidence            8865544 69999984

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=2.8e-31  Score=204.42  Aligned_cols=150  Identities=27%  Similarity=0.424  Sum_probs=124.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++   |+++ |++.|+|++|||+||+++++||++|++.+++... ....+|.++|||++|+|+++|++++
T Consensus         1 MkA~v~~~~g~p---l~i~-~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~-~~~~~p~v~GhE~~G~Vv~vG~~v~   75 (171)
T d1rjwa1           1 MKAAVVEQFKEP---LKIK-EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWP-VKPKLPLIPGHEGVGIVEEVGPGVT   75 (171)
T ss_dssp             CEEEEBSSTTSC---CEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSS-SCCCSSBCCCSCEEEEEEEECTTCC
T ss_pred             CeEEEEecCCCC---cEEE-EeECCCCCCCeEEEEEEEeeccccceeeeecccc-cccccccccCCEEEEEEEEeccccc
Confidence            999999999876   7899 8999999999999999999999999999887643 3457899999999999999999999


Q ss_pred             CCCCCCEEEeccCc-------------------cccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           81 KFKVGDEVYGDINE-------------------KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~-------------------~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      ++++||||...+..                   ....+...+|+|+||++++.++++++|++++++.|+ +. .+.++++
T Consensus        76 ~~~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A~-l~-~~~~~~~  153 (171)
T d1rjwa1          76 HLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQP-LE-KINEVFD  153 (171)
T ss_dssp             SCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEEE-GG-GHHHHHH
T ss_pred             CceeeeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEECCCCCCHHHHH-HH-HHHHHHH
Confidence            99999999754321                   112344567999999999999999999999986554 32 3446777


Q ss_pred             HHHhcccCCCCEEEEEc
Q 025278          142 GLERSAFSAGKSILVLG  158 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~g  158 (255)
                      .+.+..+ +|++|||+|
T Consensus       154 ~~~~~~~-~G~tVlViG  169 (171)
T d1rjwa1         154 RMLKGQI-NGRVVLTLE  169 (171)
T ss_dssp             HHHTTCC-SSEEEEECC
T ss_pred             HHHhcCC-CCCEEEEeC
Confidence            7766666 499999998

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.97  E-value=1.9e-31  Score=205.09  Aligned_cols=150  Identities=22%  Similarity=0.346  Sum_probs=130.8

Q ss_pred             eEEEEcccCCCccceEEeecccCCCC-CCCeEEEEEeEeecChHhHHHHcCCCCC-CCCCCCcccccceEEEEEEeCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSL-REDQVLIKVVAAALNPIDFKRMLGAFSA-TDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~-~~~eV~V~v~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      ||++++++|++   |+++ +++.|++ .++||+||+.+++||++|++.++|.++. ...++|.++|||++|+|+++|+++
T Consensus         1 kA~~~~~~g~p---l~i~-~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v   76 (171)
T d1h2ba1           1 KAARLHEYNKP---LRIE-DVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGV   76 (171)
T ss_dssp             CEEEESSTTSC---CEEE-CCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTC
T ss_pred             CEEEEEeCCCC---CEEE-EeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCC
Confidence            79999999987   7898 8999986 6899999999999999999999987643 234679999999999999999999


Q ss_pred             CCCCCCCEEEeccCcc------------------ccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHH
Q 025278           80 KKFKVGDEVYGDINEK------------------ALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE  141 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~------------------~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  141 (255)
                      +++++||||+..+...                  ...+...+|+|+||++++.+.++++|++++++.++++.+++.|+|+
T Consensus        77 ~~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~  156 (171)
T d1h2ba1          77 EGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLE  156 (171)
T ss_dssp             CSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHH
T ss_pred             CcCCCCCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHH
Confidence            9999999998754321                  1233456799999999999999999999999878888899999999


Q ss_pred             HHHhcccCCCCEEEE
Q 025278          142 GLERSAFSAGKSILV  156 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI  156 (255)
                      ++++..+ .|++|||
T Consensus       157 al~~~~~-~G~~VlI  170 (171)
T d1h2ba1         157 RLEKGEV-LGRAVLI  170 (171)
T ss_dssp             HHHTTCC-SSEEEEE
T ss_pred             HHHhcCC-CCCEEEe
Confidence            9988888 8999998

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.5e-30  Score=194.07  Aligned_cols=143  Identities=24%  Similarity=0.317  Sum_probs=126.8

Q ss_pred             eEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q 025278            2 KAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVKK   81 (255)
Q Consensus         2 ka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~   81 (255)
                      +.+.|+++|.+ +.|+++ +.+.|+|++|||+||+.+++||++|+++++|.++  ...+|.++|||++|+|+++|+++++
T Consensus         2 ~~i~~~~~G~p-e~l~~~-e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~--~~~~p~~~G~e~~G~V~~vG~~v~~   77 (147)
T d1qora1           2 TRIEFHKHGGP-EVLQAV-EFTPADPAENEIQVENKAIGINFIDTYIRSGLYP--PPSLPSGLGTEAAGIVSKVGSGVKH   77 (147)
T ss_dssp             EEEEBSSCCSG-GGCEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSC--CSSSSBCCCSCEEEEEEEECTTCCS
T ss_pred             eEEEEcccCCC-ceeEEE-EecCCCCCCCEEEEEEEEecccceeeeeecCCCC--CCcceeeeccccccceeeeeeeccc
Confidence            57899999999 889999 8999999999999999999999999999999875  4578999999999999999999999


Q ss_pred             CCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHh--hhccchhHHHHHHHHHhcccCCCCEEEE
Q 025278           82 FKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVE--AASLPLATETAYEGLERSAFSAGKSILV  156 (255)
Q Consensus        82 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~--aa~l~~~~~ta~~~l~~~~~~~g~~VlI  156 (255)
                      |++||||+...        ...|+|+||++++.+.++++|+++++++  ++.+++...++++++...++++|++|||
T Consensus        78 ~~vGdrV~~~~--------~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~~~~~~G~~VLI  146 (147)
T d1qora1          78 IKAGDRVVYAQ--------SALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLI  146 (147)
T ss_dssp             CCTTCEEEESC--------CSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEE
T ss_pred             ccccceeeeec--------cccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence            99999997543        2368999999999999999999998764  4455777778888887778999999997

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1e-30  Score=204.13  Aligned_cols=153  Identities=18%  Similarity=0.231  Sum_probs=129.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCC-
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQV-   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v-   79 (255)
                      |||+++..+++. ..+++. +++.++++++||+||+.++|||++|++.+.|.++  ..++|+++|||++|+|+++|+++ 
T Consensus         7 ~ka~~~~~~~~~-~~~~~~-~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~--~~~~P~i~GHE~~G~Vv~vG~~v~   82 (192)
T d1piwa1           7 FEGIAIQSHEDW-KNPKKT-KYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWG--NMKMPLVVGHEIVGKVVKLGPKSN   82 (192)
T ss_dssp             EEEEEECCSSST-TSCEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTS--CCCSSEECCCCEEEEEEEECTTCC
T ss_pred             eEEEEEeCCCcC-CcceEe-eccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCC--CCCCCcCcccccccchhhcccccc
Confidence            799999999987 667887 6777778999999999999999999999999864  45789999999999999999988 


Q ss_pred             CCCCCCCEEEeccCc--------------------------cccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccc
Q 025278           80 KKFKVGDEVYGDINE--------------------------KALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLP  133 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~--------------------------~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~  133 (255)
                      +.+++||||...+..                          ....+...+|+|+||++++.+.++++|++++++.|+.+.
T Consensus        83 ~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~  162 (192)
T d1piwa1          83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGE  162 (192)
T ss_dssp             SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEEEESSH
T ss_pred             cccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCHHHHHHHH
Confidence            569999999643210                          001244567999999999999999999999987766555


Q ss_pred             hhHHHHHHHHHhcccCCCCEEEEE
Q 025278          134 LATETAYEGLERSAFSAGKSILVL  157 (255)
Q Consensus       134 ~~~~ta~~~l~~~~~~~g~~VlI~  157 (255)
                      ..+.|||++++++.+++|++|+|.
T Consensus       163 ~~~~ta~~~l~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         163 AGVHEAFERMEKGDVRYRFTLVGY  186 (192)
T ss_dssp             HHHHHHHHHHHHTCCSSEEEEECC
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEE
Confidence            557799999999999999999986

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.4e-31  Score=203.73  Aligned_cols=153  Identities=24%  Similarity=0.311  Sum_probs=126.6

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCC-CCCCCCCCcccccceEEEEEEeCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAF-SATDSPLPTIPGYDVAGVVEKVGSQV   79 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~~G~~v   79 (255)
                      |+|+|+++|++    |+++ |++.|+|+++||+||+.+++||++|++.+++.. +....++|.++|||++|+|+++|+++
T Consensus         8 ~~a~V~~gp~~----l~l~-evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v   82 (185)
T d1pl8a1           8 NLSLVVHGPGD----LRLE-NYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSV   82 (185)
T ss_dssp             CEEEEEEETTE----EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTC
T ss_pred             CEEEEEeCCCe----EEEE-EeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccce
Confidence            68999998876    4999 899999999999999999999999999987542 22245678999999999999999999


Q ss_pred             CCCCCCCEEEeccCccc-------------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHH
Q 025278           80 KKFKVGDEVYGDINEKA-------------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAY  140 (255)
Q Consensus        80 ~~~~~Gd~V~~~~~~~~-------------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~  140 (255)
                      +++++||||+..+...+                   ......+|+|+||++++.++++++|+++++++++.++++  +++
T Consensus        83 ~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~pl~--~a~  160 (185)
T d1pl8a1          83 KHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLE--KAL  160 (185)
T ss_dssp             CSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEEGG--GHH
T ss_pred             eeecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHHHHHH--HHH
Confidence            99999999987543111                   111235789999999999999999999999888776654  477


Q ss_pred             HHHHhcccCCCCEEEEEcCCch
Q 025278          141 EGLERSAFSAGKSILVLGGAGG  162 (255)
Q Consensus       141 ~~l~~~~~~~g~~VlI~ga~g~  162 (255)
                      ++++..++++|++|+| | +|+
T Consensus       161 ~a~~~~~~~~G~~VlI-g-~GP  180 (185)
T d1pl8a1         161 EAFETFKKGLGLKIML-K-CDP  180 (185)
T ss_dssp             HHHHHHHTTCCSEEEE-E-CCT
T ss_pred             HHHHHhCCCCCCEEEE-E-eCC
Confidence            8888888999999998 5 454

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.97  E-value=9.8e-31  Score=205.87  Aligned_cols=151  Identities=21%  Similarity=0.294  Sum_probs=129.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++.+++.+   |+++ |++.|+|+++||+||+.++|||++|++.+.|..+  ...+|.++|||++|+|+++|++++
T Consensus         9 ~kAav~~~~~~p---l~i~-ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~--~~~~p~i~GhE~~G~v~~vG~~v~   82 (199)
T d1cdoa1           9 CKAAVAWEANKP---LVIE-EIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKH--KDGFPVVLGHEGAGIVESVGPGVT   82 (199)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCC--TTSCSEECCCCEEEEEEEECTTCC
T ss_pred             EEEEEEecCCCC---cEEE-EEECCCCCCCEEEEEEEEEEEecchhhhhhhccc--ccccccccccccceEEEEEcCCCc
Confidence            579999999876   6899 8999999999999999999999999999998653  456799999999999999999999


Q ss_pred             CCCCCCEEEeccCccccC--------------------------C-------------CCCCcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINEKALD--------------------------H-------------PKRNGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~--------------------------~-------------~~~~g~~~~~~~~~~~~~~~lp  121 (255)
                      ++++||||+..+...+..                          +             ....|+|+||++++.+.++++|
T Consensus        83 ~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP  162 (199)
T d1cdoa1          83 EFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKID  162 (199)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECC
T ss_pred             eecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEECC
Confidence            999999998764311100                          0             0014899999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEE
Q 025278          122 KNLSFVEAASLPLATETAYEGLE-RSAFSAGKSILVL  157 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~  157 (255)
                      +++++++++.+.+++.|++++++ ....+.|++|||+
T Consensus       163 ~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         163 PSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             TTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            99999999999999999999996 4677899999984

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=7e-30  Score=197.55  Aligned_cols=151  Identities=26%  Similarity=0.336  Sum_probs=123.4

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCC------CCCCCCcccccceEEEEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSA------TDSPLPTIPGYDVAGVVEK   74 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~------~~~~~p~~~G~e~~G~V~~   74 (255)
                      |||++++++|++   |+++ |++.|+|+++||+||+.++|||++|+++++|.++.      ...++|+++|||++|+|++
T Consensus         1 MKA~~~~~~G~p---l~i~-dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~   76 (177)
T d1jvba1           1 MRAVRLVEIGKP---LSLQ-EIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEE   76 (177)
T ss_dssp             CEEEEECSTTSC---CEEE-ECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEE
T ss_pred             CeEEEEEeCCCC---CEEE-EeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEee
Confidence            999999999987   7898 89999999999999999999999999999987542      2357899999999999999


Q ss_pred             eCCCCCCCCCCCEEEeccCc------------------cccCCCCCCcceeeEEeeeCC-ceEeCCCCCCHHhhhccchh
Q 025278           75 VGSQVKKFKVGDEVYGDINE------------------KALDHPKRNGSLAEYTAVEEN-LLALKPKNLSFVEAASLPLA  135 (255)
Q Consensus        75 ~G~~v~~~~~Gd~V~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~-~~~~lp~~~~~~~aa~l~~~  135 (255)
                      +|++++++++||||...+..                  ....+...+|+|+||++++.. .++++|+..+.+.++....+
T Consensus        77 ~g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~  156 (177)
T d1jvba1          77 VGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEE  156 (177)
T ss_dssp             ECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSSCCCCEEEEEGGG
T ss_pred             eccCccccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCCChHHHHHHHHHH
Confidence            99999999999999865321                  112344567999999999765 46677665554444444668


Q ss_pred             HHHHHHHHHhcccCCCCEEEE
Q 025278          136 TETAYEGLERSAFSAGKSILV  156 (255)
Q Consensus       136 ~~ta~~~l~~~~~~~g~~VlI  156 (255)
                      +.++++++...+. .|++|||
T Consensus       157 ~~~a~~~~~~~~~-~G~~VlI  176 (177)
T d1jvba1         157 ANEAIDNLENFKA-IGRQVLI  176 (177)
T ss_dssp             HHHHHHHHHTTCC-CSEEEEE
T ss_pred             HHHHHHHHHhhcc-cCCceEC
Confidence            8889999988776 5899987

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.97  E-value=3.3e-30  Score=203.45  Aligned_cols=149  Identities=28%  Similarity=0.340  Sum_probs=126.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++   |+++ |+|.|+|+++||+||+.++|||++|++.++|.++   ..+|.++|||++|+|+++|++++
T Consensus         9 ~KAaV~~~~g~p---l~i~-evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~---~~~P~v~GHE~~G~V~~vG~~V~   81 (202)
T d1e3ia1           9 CKAAIAWKTGSP---LCIE-EIEVSPPKACEVRIQVIATCVCPTDINATDPKKK---ALFPVVLGHECAGIVESVGPGVT   81 (202)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC---CCSSBCCCCEEEEEEEEECTTCC
T ss_pred             EEEEEEccCCCC---CEEE-EEECCCCCCCEEEEEEEEEEEeccccceeeeecc---cccccccccccceEEeeecCCce
Confidence            799999999876   6899 8999999999999999999999999999999764   56799999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc-------------------------------------------CCCCCCcceeeEEeeeCCce
Q 025278           81 KFKVGDEVYGDINEKAL-------------------------------------------DHPKRNGSLAEYTAVEENLL  117 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~-------------------------------------------~~~~~~g~~~~~~~~~~~~~  117 (255)
                      ++++||||+..+...+.                                           .+....|+|+||+++++..+
T Consensus        82 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l  161 (202)
T d1e3ia1          82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (202)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             eccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhE
Confidence            99999999875421110                                           00112489999999999999


Q ss_pred             EeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEc
Q 025278          118 ALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLG  158 (255)
Q Consensus       118 ~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~g  158 (255)
                      +++|++++++.++.+.+++.+++++++.  +++|++|.|+.
T Consensus       162 ~~lP~~~~~~~~~~~~~~~~~~~~a~~~--~k~G~~V~vi~  200 (202)
T d1e3ia1         162 ARVDDEFDLDLLVTHALPFESINDAIDL--MKEGKSIRTIL  200 (202)
T ss_dssp             EECCTTSCGGGGEEEEEEGGGHHHHHHH--HHTTCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence            9999999998888777777778888754  46899988764

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.97  E-value=4.8e-30  Score=201.33  Aligned_cols=151  Identities=27%  Similarity=0.285  Sum_probs=129.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++   |+++ ++|.|+|+++||+||+.++|||++|+++++|.++  ...+|.++|||++|+|+++|++++
T Consensus         7 ~kAav~~~~g~~---l~i~-evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~--~~~~p~v~GhE~~G~V~~vG~~V~   80 (197)
T d2fzwa1           7 CKAAVAWEAGKP---LSIE-EIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADP--EGCFPVILGHLGAGIVESVGEGVT   80 (197)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCT--TCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             EEEEEEccCCCC---CEEE-EEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcc--cccccccCCcceeeEEEeecCCce
Confidence            799999999987   7999 8999999999999999999999999999999763  457899999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc---------------------------------------CCCCCCcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINEKAL---------------------------------------DHPKRNGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~---------------------------------------~~~~~~g~~~~~~~~~~~~~~~lp  121 (255)
                      .+++||||+..+...+.                                       .+....|+|+||++++...++++|
T Consensus        81 ~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          81 KLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             ecCCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEECC
Confidence            99999999875321100                                       011124899999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHHHhc-ccCCCCEEEEE
Q 025278          122 KNLSFVEAASLPLATETAYEGLERS-AFSAGKSILVL  157 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlI~  157 (255)
                      ++++.++++.+++++.|++.+++.. .-+.+++|||+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999999998643 34678899874

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=5.5e-30  Score=187.74  Aligned_cols=131  Identities=33%  Similarity=0.460  Sum_probs=117.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++++|++   ++++ +.+.|+|+++||+||+.++|||++|+++++|.++. ...+|+++|||++|+|        
T Consensus         1 MkA~~~~~~G~~---l~~~-e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~-~~~~P~v~G~E~~G~V--------   67 (131)
T d1iz0a1           1 MKAWVLKRLGGP---LELV-DLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLT-RLHPPFIPGMEVVGVV--------   67 (131)
T ss_dssp             CEEEEECSTTSC---EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCCEEEEEE--------
T ss_pred             CcEEEEccCCCC---CEEE-EccCCCCCCCEEEEEEEEEeccccccccccccccc-cccceeEeeeeeEEee--------
Confidence            999999999976   7888 89999999999999999999999999999998753 4578999999999999        


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEE
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVL  157 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~  157 (255)
                         +||||++...         +|+|+||++++.+.++++|+++++++++.+++++.|||+++.+.. +.|++||++
T Consensus        68 ---vGd~V~~~~~---------~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g-~~g~tvl~l  131 (131)
T d1iz0a1          68 ---EGRRYAALVP---------QGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG-HTGKVVVRL  131 (131)
T ss_dssp             ---TTEEEEEECS---------SCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT-CCBEEEEEC
T ss_pred             ---ccceEEEEec---------cCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc-cCCCEEEEC
Confidence               3999998753         699999999999999999999999999999999999999995422 569999863

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=8.8e-30  Score=192.04  Aligned_cols=148  Identities=26%  Similarity=0.317  Sum_probs=126.4

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++.+++. ..++++ +.+.|+|++|||+||+.++|||++|+..+.|.++ .....|+++|||++|+|++  ..++
T Consensus         4 ~KA~v~~~~~~~-~~~~i~-~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~-~~~~~p~v~g~e~~G~v~~--~~~~   78 (152)
T d1xa0a1           4 FQAFVVNKTETE-FTAGVQ-TISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGK-IVKTYPFVPGIDLAGVVVS--SQHP   78 (152)
T ss_dssp             EEEEEEEEETTE-EEEEEE-EEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGS-SCCSSSBCCCSEEEEEEEE--CCSS
T ss_pred             eEEEEEEecCCc-eEEEEE-EccCCCCCCCEEEEEEEEeCCChHHHHHHhhccc-ccccccceeeeeeeeeeec--cCCC
Confidence            799999999987 567788 8999999999999999999999999999888764 2357799999999999998  5667


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEc
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLG  158 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~g  158 (255)
                      .+++||+|++....   .+...+|+|+||+++|.+.++++|++++ ++++.++++.+|+|.++ .+.+++ |++|||+|
T Consensus        79 ~~~~g~~v~~~~~~---~~~~~~G~~aEy~~v~~~~~~~iP~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1          79 RFREGDEVIATGYE---IGVTHFGGYSEYARLHGEWLVPLPKGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             SCCTTCEEEEESTT---BTTTBCCSSBSEEEECGGGCEECCTTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             ccccCCEEEEecCc---cccccCCCcceeeeehhhccccCCCCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            89999999986532   2233479999999999999999999998 46788888888888887 456665 99999975

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.96  E-value=1.4e-28  Score=192.30  Aligned_cols=149  Identities=21%  Similarity=0.317  Sum_probs=123.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |+|+++.+++.+   |+++ ++|.|+|+++||+||+.+++||++|++++.|.++   .++|.++|||++|+|+++|++++
T Consensus         4 ~~Aav~~~~g~~---l~l~-~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~---~~~P~i~GHE~~G~V~~vG~~v~   76 (194)
T d1f8fa1           4 IIAAVTPCKGAD---FELQ-ALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP---VPLPAVLGHEGSGIIEAIGPNVT   76 (194)
T ss_dssp             EEEEEBCSTTCC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCEEEEEEEEECTTCC
T ss_pred             eEEEEEcCCCCC---cEEE-EeeCCCCCCCEEEEEEEEEEecCchHhhhhhccc---ccCCcccccceEEEeeecCccce
Confidence            789999998877   7999 8999999999999999999999999999999864   46899999999999999999999


Q ss_pred             CCCCCCEEEeccCcc--------------------ccCCC--------------------CCCcceeeEEeeeCCceEeC
Q 025278           81 KFKVGDEVYGDINEK--------------------ALDHP--------------------KRNGSLAEYTAVEENLLALK  120 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~--------------------~~~~~--------------------~~~g~~~~~~~~~~~~~~~l  120 (255)
                      ++++||||+..+...                    ...+.                    ...|+|+||++++..+++++
T Consensus        77 ~~~vGDrVv~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~i  156 (194)
T d1f8fa1          77 ELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKV  156 (194)
T ss_dssp             SCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEE
T ss_pred             eEccCceeeeecccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEEC
Confidence            999999997643210                    00000                    01378999999999999999


Q ss_pred             CCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE
Q 025278          121 PKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAA  182 (255)
Q Consensus       121 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~  182 (255)
                      |++++++++                        +++.| +|++|++++|+++.+ +++.++.
T Consensus       157 p~~i~~~~~------------------------~~i~g-~g~~g~~aiq~a~~~-g~~~iia  192 (194)
T d1f8fa1         157 TKDFPFDQL------------------------VKFYA-FDEINQAAIDSRKGI-TLKPIIK  192 (194)
T ss_dssp             CTTCCGGGG------------------------EEEEE-GGGHHHHHHHHHHTS-CSEEEEE
T ss_pred             CCCCCcccE------------------------EEEeC-cHHHHHHHHHHHHHc-CCCEEEE
Confidence            999876443                        44555 899999999999997 6655543

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=3.7e-29  Score=193.69  Aligned_cols=146  Identities=19%  Similarity=0.307  Sum_probs=121.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++   |+++ +++.|+|+++||+||+.++|||++|+++++|.++  ..++|.++|||++|+|+++|++++
T Consensus         5 ~kA~v~~~~~~p---l~i~-ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~--~~~~P~vlGHE~~G~V~~vG~~v~   78 (184)
T d1vj0a1           5 AHAMVLEKFNQP---LVYK-EFEISDIPRGSILVEILSAGVCGSDVHMFRGEDP--RVPLPIILGHEGAGRVVEVNGEKR   78 (184)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCT--TCCSSBCCCCEEEEEEEEESSCCB
T ss_pred             EEEEEEecCCCC---cEEE-EeeCCCCCCCEEEEEEEEECCCCCchhheeccCC--ccccccccceeeeeeeeEEecccc
Confidence            799999999976   7998 8999999999999999999999999999999874  346899999999999999999985


Q ss_pred             -----CCCCCCEEEeccCcc-------------------ccCC--------CCCCcceeeEEeee-CCceEeCCCCCCHH
Q 025278           81 -----KFKVGDEVYGDINEK-------------------ALDH--------PKRNGSLAEYTAVE-ENLLALKPKNLSFV  127 (255)
Q Consensus        81 -----~~~~Gd~V~~~~~~~-------------------~~~~--------~~~~g~~~~~~~~~-~~~~~~lp~~~~~~  127 (255)
                           .+++||||+..+...                   ...+        ...+|+|+||++++ ...++++|++++.+
T Consensus        79 ~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l~~~  158 (184)
T d1vj0a1          79 DLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHR  158 (184)
T ss_dssp             CTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTCCEE
T ss_pred             ccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCCCHH
Confidence                 468999998653210                   0111        13479999999996 57899999999854


Q ss_pred             hhhccchhHHHHHHHHHhcccCCCCEEEEEc
Q 025278          128 EAASLPLATETAYEGLERSAFSAGKSILVLG  158 (255)
Q Consensus       128 ~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~g  158 (255)
                      .    |+  .+|+++++++.+++|++|+|+.
T Consensus       159 ~----pl--~~A~~a~~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         159 L----PL--KEANKALELMESREALKVILYP  183 (184)
T ss_dssp             E----EG--GGHHHHHHHHHHTSCSCEEEEC
T ss_pred             H----HH--HHHHHHHHHhCCCcCCEEEEee
Confidence            2    33  3488899999999999999974

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.96  E-value=3.1e-31  Score=204.47  Aligned_cols=149  Identities=19%  Similarity=0.266  Sum_probs=116.2

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++++++++.    +++ |.|.|+|+++||+||++++|||++|++.+++..+  ..++|.++|||++|+|+++|++++
T Consensus         1 MKa~v~~~~~~l----~i~-e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~--~~~~P~i~GhE~~G~V~~vG~~v~   73 (177)
T d1jqba1           1 MKGFAMLGINKL----GWI-EKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGAL--GDRKNMILGHEAVGEVVEVGSEVK   73 (177)
T ss_dssp             CEEEEEEETTEE----EEE-ECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTT--CCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CeEEEEEeCCCe----EEE-EeeCCCCCCCEEEEEEEEEecCCCcccccccCCC--CCCCCccCcceeeEEeeecccccc
Confidence            999999999875    999 8999999999999999999999999987765432  346799999999999999999999


Q ss_pred             CCCCCCEEEeccCcc---------------------ccCCCCCCcceeeEEeeeC--CceEeCCCCCCHHhhhccchhHH
Q 025278           81 KFKVGDEVYGDINEK---------------------ALDHPKRNGSLAEYTAVEE--NLLALKPKNLSFVEAASLPLATE  137 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~---------------------~~~~~~~~g~~~~~~~~~~--~~~~~lp~~~~~~~aa~l~~~~~  137 (255)
                      +|++||||+..+...                     ...+...+|+|+||+++|.  .+++++|+++++++++.....  
T Consensus        74 ~~~vGdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~~--  151 (177)
T d1jqba1          74 DFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVYH--  151 (177)
T ss_dssp             SCCTTCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEEEE--
T ss_pred             eecCCCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHHHHH--
Confidence            999999998643211                     1123345799999999986  378999999998776654332  


Q ss_pred             HHHHHHHhcccCCCCEEEEEcCCchHHHHH
Q 025278          138 TAYEGLERSAFSAGKSILVLGGAGGVGTMV  167 (255)
Q Consensus       138 ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a  167 (255)
                       +++.+       ++.++++| .|++|+++
T Consensus       152 -~~~~~-------~~~vlv~g-~gp~gl~a  172 (177)
T d1jqba1         152 -GFDHI-------EEALLLMK-DKPKDLIK  172 (177)
T ss_dssp             -SGGGH-------HHHHHHHH-HCCTTCSE
T ss_pred             -HHHHh-------cCceEEEC-CCHHHhhe
Confidence             12122       23467777 67777654

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.96  E-value=1.8e-31  Score=209.94  Aligned_cols=163  Identities=23%  Similarity=0.302  Sum_probs=130.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCC-------CCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSL-------REDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVE   73 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~-------~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~   73 (255)
                      +||++++++++.    +++ |+|.|++       .++||+||+.+++||++|+++++|.++   .++|.++|||++|+|+
T Consensus         2 ~kA~v~~~~~~l----e~~-e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~---~~~P~v~GHE~~G~Vv   73 (201)
T d1kola1           2 NRGVVYLGSGKV----EVQ-KIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT---AQVGLVLGHEITGEVI   73 (201)
T ss_dssp             EEEEEEEETTEE----EEE-EECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC---CCTTCBCCCCEEEEEE
T ss_pred             cEEEEEeCCCce----EEE-EecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc---cccceeccceeeeeee
Confidence            599999998864    888 8888865       469999999999999999999999864   4679999999999999


Q ss_pred             EeCCCCCCCCCCCEEEeccCcc--------------c--------------cCCCCCCcceeeEEeeeCC--ceEeCCCC
Q 025278           74 KVGSQVKKFKVGDEVYGDINEK--------------A--------------LDHPKRNGSLAEYTAVEEN--LLALKPKN  123 (255)
Q Consensus        74 ~~G~~v~~~~~Gd~V~~~~~~~--------------~--------------~~~~~~~g~~~~~~~~~~~--~~~~lp~~  123 (255)
                      ++|++++++++||||...+...              +              ......+|+|+||+++|..  ++++||++
T Consensus        74 ~vG~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~  153 (201)
T d1kola1          74 EKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDR  153 (201)
T ss_dssp             EECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCH
T ss_pred             ccccccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCC
Confidence            9999999999999997543210              0              0112346899999999853  79999998


Q ss_pred             CCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC
Q 025278          124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA  177 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~  177 (255)
                      ....+++.+...+.++++++.....+.++    +| +|++|++++|+||.+ |+
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~~~~~~~g~----~g-~G~vG~~~i~~ak~~-GA  201 (201)
T d1kola1         154 DKAMEKINIAEVVGVQVISLDDAPRGYGE----FD-AGVPKKFVIDPHKTF-SA  201 (201)
T ss_dssp             HHHHHTCCHHHHHTEEEECGGGHHHHHHH----HH-HTCSCEEEECTTCSS-CC
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCCCeE----Ee-eCHHHHHHHHHHHHc-CC
Confidence            76667777766776777777666555553    46 999999999999985 53

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.95  E-value=3.5e-28  Score=191.09  Aligned_cols=149  Identities=28%  Similarity=0.357  Sum_probs=119.3

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++.+++++   |+++ |++.|+|+++||+|||.++|||++|++.++|.++   .++|.++|||++|+|+++|++++
T Consensus         9 ~KAavl~~~~~~---l~i~-ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~---~~~P~i~GHE~~G~Vv~vG~~v~   81 (198)
T d2jhfa1           9 CKAAVLWEEKKP---FSIE-EVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV---TPLPVIAGHEAAGIVESIGEGVT   81 (198)
T ss_dssp             EEEEEBCSTTSC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSC---CCSSBCCCCSEEEEEEEECTTCC
T ss_pred             EEEEEEecCCCC---CEEE-EEECCCCCCCEEEEEEEEEecccccceeecCCcc---cccceecccceeEEEEecCcccc
Confidence            799999998876   7999 8999999999999999999999999999999865   46899999999999999999999


Q ss_pred             CCCCCCEEEeccCcccc---------------------------------------CCCCCCcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINEKAL---------------------------------------DHPKRNGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~---------------------------------------~~~~~~g~~~~~~~~~~~~~~~lp  121 (255)
                      ++++||||+..+...+.                                       ......|+|+||+++|..+++++|
T Consensus        82 ~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~p  161 (198)
T d2jhfa1          82 TVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKID  161 (198)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECC
T ss_pred             CcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEECC
Confidence            99999999875431110                                       001124899999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEc
Q 025278          122 KNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLG  158 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~g  158 (255)
                      +.++++.++...+++.+...+  ...+++|++|+|+.
T Consensus       162 ~~~~~e~l~~~~~~~~~v~~g--~~~l~~G~~VaVi~  196 (198)
T d2jhfa1         162 AAFALDPLITHVLPFEKINEG--FDLLRSGESIRTIL  196 (198)
T ss_dssp             TTSCCGGGEEEEEEGGGHHHH--HHHHHTTCCSEEEE
T ss_pred             CCCCHHHHHHHHHHHHhhhhC--CceeeCCCEEEEEE
Confidence            998876665544443222222  23467899998864

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.95  E-value=1.3e-28  Score=193.21  Aligned_cols=149  Identities=26%  Similarity=0.293  Sum_probs=119.6

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++++   |+++ |+|.|+|+++||+||+.++|||++|+++++|.++   .++|.++|||++|+|+++|+++.
T Consensus         9 ~KAav~~~~g~~---l~i~-ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~---~~~P~i~GHE~~G~Vv~~G~~v~   81 (198)
T d1p0fa1           9 CKAAVAWEPHKP---LSLE-TITVAPPKAHEVRIKILASGICGSDSSVLKEIIP---SKFPVILGHEAVGVVESIGAGVT   81 (198)
T ss_dssp             EEEEEBSSTTSC---CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCCEEEEEEEECTTCC
T ss_pred             EEEEEEccCCCC---CEEE-EEECCCCCCCEEEEEEEEEEEecccceeeeeccc---cccccccceeeeeeeeecCcccc
Confidence            899999999876   7999 8999999999999999999999999999999864   46899999999999999999999


Q ss_pred             CCCCCCEEEeccCccc------------------c--------CC-------------CCCCcceeeEEeeeCCceEeCC
Q 025278           81 KFKVGDEVYGDINEKA------------------L--------DH-------------PKRNGSLAEYTAVEENLLALKP  121 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~------------------~--------~~-------------~~~~g~~~~~~~~~~~~~~~lp  121 (255)
                      ++++||||+..+...+                  .        ..             ....|+|+||+.++...++++|
T Consensus        82 ~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip  161 (198)
T d1p0fa1          82 CVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKID  161 (198)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEEC
T ss_pred             cCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECC
Confidence            9999999987542100                  0        00             0124789999999999999999


Q ss_pred             CCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHH
Q 025278          122 KNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTM  166 (255)
Q Consensus       122 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~  166 (255)
                      +.++.+.++...+..         ..+.++++|+|.| +|++|++
T Consensus       162 ~~~~~~~~~~~~~~~---------~~v~~~~~vlv~G-~G~iGl~  196 (198)
T d1p0fa1         162 PKINVNFLVSTKLTL---------DQINKAFELLSSG-QGVRSIM  196 (198)
T ss_dssp             TTSCGGGGEEEEECG---------GGHHHHHHHTTTS-SCSEEEE
T ss_pred             CCCCHHHHHHhhcch---------hhcCCCCEEEEEC-CCcceEE
Confidence            999876654433332         2334445688888 7887754

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-27  Score=178.78  Aligned_cols=135  Identities=21%  Similarity=0.215  Sum_probs=115.7

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++++++.. ..++++ +++.|+|++|||+|||.++|||++|+....|.++. ...+|.++|+|++|+|+++|.  .
T Consensus         1 MkA~v~~~~~~~-~~l~i~-~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~-~~~~p~v~G~e~~G~V~~~~~--~   75 (146)
T d1o89a1           1 LQALLLEQQDGK-TLASVQ-TLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKI-IRNFPMIPGIDFAGTVRTSED--P   75 (146)
T ss_dssp             CEEEEEECC----CEEEEE-ECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSC-CCSSSBCCCSEEEEEEEEECS--T
T ss_pred             CeEEEEEcCCCc-eEEEEE-EcCCCCCCCCEEEEEEeeccCccceeeEEEeeccc-ccccceeccccccccceeecc--C
Confidence            999999999987 778898 89999999999999999999999999999998653 356789999999999999766  4


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHH
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL  143 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l  143 (255)
                      .+++||+|+.....   .+...+|+|+||+++|.+.++++|+++|+++||+++++..||+..+
T Consensus        76 ~~~~g~~v~~~~~~---~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1          76 RFHAGQEVLLTGWG---VGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             TCCTTCEEEEECTT---BTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred             CccceeeEEeeccc---ceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            79999999876532   2334579999999999999999999999999999999888886555

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=6e-30  Score=194.99  Aligned_cols=155  Identities=30%  Similarity=0.272  Sum_probs=134.1

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||+++..+++. ..++++ +++.|+|++|||+|||+|+|||++|++.+.|.++. ....|.++|+|++|+|++  +.+.
T Consensus         4 ~ka~~~~~~g~~-~~l~~~-~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~-~~~~~~~~g~e~~G~v~~--~~~~   78 (162)
T d1tt7a1           4 FQALQAEKNADD-VSVHVK-TISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNI-VREYPLILGIDAAGTVVS--SNDP   78 (162)
T ss_dssp             EEEEEECCGGGS-CCCEEE-EEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTT-CSSCSEECCSEEEEEEEE--CSST
T ss_pred             EEEEEEEecCCC-eEEEEE-EcCCCCCCCCEEEEEEEEecccchhhheeeecccc-cccceeeeeeeccccccc--cccc
Confidence            899999999987 788999 89999999999999999999999999999987652 346788999999999998  5667


Q ss_pred             CCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCC
Q 025278           81 KFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGA  160 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~  160 (255)
                      ++++||+|+.....   .+...+|+|+||+++|++.++++|+++++++|+.++...+|+|.++...+...+++|||+|++
T Consensus        79 ~~~~g~~v~~~~~~---~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~~~~~~~~Vli~ga~  155 (162)
T d1tt7a1          79 RFAEGDEVIATSYE---LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLEETPGALKDILQNRIQ  155 (162)
T ss_dssp             TCCTTCEEEEESTT---BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECSTTHHHHHHHTTTTCCS
T ss_pred             ccccceeeEeeecc---ceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence            89999999886532   234457999999999999999999999999999999999999987755556667889998877


Q ss_pred             chH
Q 025278          161 GGV  163 (255)
Q Consensus       161 g~~  163 (255)
                      |++
T Consensus       156 G~v  158 (162)
T d1tt7a1         156 GRV  158 (162)
T ss_dssp             SEE
T ss_pred             ceE
Confidence            653

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.9e-27  Score=181.73  Aligned_cols=140  Identities=19%  Similarity=0.180  Sum_probs=112.9

Q ss_pred             CeEEEEcccCCCccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCCCC
Q 025278            1 MKAWVYKEYGNSQSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQVK   80 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~v~   80 (255)
                      |||++..+++++   |+++ |++.|+|+++||+||+.++|||++|++.++|.++  ...+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~p---l~i~-ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~--~~~~P~i~GhE~~G~V~~vG~~V~   74 (179)
T d1uufa1           1 IKAVGAYSAKQP---LEPM-DITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWA--GTVYPCVPGHEIVGRVVAVGDQVE   74 (179)
T ss_dssp             CEEEEBSSTTSC---CEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTS--CCCSSBCCCCCEEEEEEEECTTCC
T ss_pred             CeEEEEccCCCC---CEEE-EecCCCCCCCEEEEEEEEECCCCCcceeeeeeec--cccccccccccccccchhhccccc
Confidence            999999999988   8999 8999999999999999999999999999999764  357899999999999999999999


Q ss_pred             CCCCCCEEEeccCc---------------cc------------cCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccc
Q 025278           81 KFKVGDEVYGDINE---------------KA------------LDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLP  133 (255)
Q Consensus        81 ~~~~Gd~V~~~~~~---------------~~------------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~  133 (255)
                      ++++||||...+..               .+            .......|+|+||++++.+.++++|+.....   .+.
T Consensus        75 ~~~vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~~~~---~~a  151 (179)
T d1uufa1          75 KYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEM---IRA  151 (179)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCCEEE---ECG
T ss_pred             cCCCCCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCCcCh---hHh
Confidence            99999999643210               00            0111246899999999999999999665322   222


Q ss_pred             hhHHHHHHHHHhcccC
Q 025278          134 LATETAYEGLERSAFS  149 (255)
Q Consensus       134 ~~~~ta~~~l~~~~~~  149 (255)
                      .++.++++++.++.++
T Consensus       152 ~~l~~a~~a~~~a~v~  167 (179)
T d1uufa1         152 DQINEAYERMLRGDVK  167 (179)
T ss_dssp             GGHHHHHHHHHTTCSS
T ss_pred             chhHHHHHHHHHhCcc
Confidence            3455688888766554

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.95  E-value=6.2e-30  Score=197.53  Aligned_cols=159  Identities=18%  Similarity=0.220  Sum_probs=131.4

Q ss_pred             CeEEEEcccCCCccceEEee-cccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCC--------CCCCCcccccceEEE
Q 025278            1 MKAWVYKEYGNSQSVLKFET-NVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSAT--------DSPLPTIPGYDVAGV   71 (255)
Q Consensus         1 mka~v~~~~~~~~~~l~~~~-~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~--------~~~~p~~~G~e~~G~   71 (255)
                      |||++++++|++++.++++. +.|.|+|+++||+||+++++||++|+++++|.++..        ....|.++|+|++|+
T Consensus         4 ~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~g~   83 (175)
T d1gu7a1           4 AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFE   83 (175)
T ss_dssp             EEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEEE
T ss_pred             eEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccccc
Confidence            79999999998855555541 667788999999999999999999999999876442        225678899999999


Q ss_pred             EEEeCCCCCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHHhhhccchhHHHHHHHHH--hcccC
Q 025278           72 VEKVGSQVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLE--RSAFS  149 (255)
Q Consensus        72 V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~--~~~~~  149 (255)
                      |++.|.++..++.||+|.....        ..|+|+||+++|.+.++++|+.++.+.+  +++..+|||+++.  ...++
T Consensus        84 V~~~~~~~~~~~~g~~v~~~~~--------~~g~~aey~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~  153 (175)
T d1gu7a1          84 VIKVGSNVSSLEAGDWVIPSHV--------NFGTWRTHALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTK  153 (175)
T ss_dssp             EEEECTTCCSCCTTCEEEESSS--------CCCCSBSEEEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSS
T ss_pred             cccccccccccccccceecccc--------ccccccceeeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCC
Confidence            9999999999999999987542        3689999999999999999998764433  4455667888874  46799


Q ss_pred             CCCEEEEEc-CCchHHHHHHH
Q 025278          150 AGKSILVLG-GAGGVGTMVIQ  169 (255)
Q Consensus       150 ~g~~VlI~g-a~g~~G~~a~~  169 (255)
                      +|++|+|+| |+|++|++++|
T Consensus       154 ~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         154 PLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             CHHHHHHHHHHTGGGSCEEEE
T ss_pred             CCCEEEEECccchhhhheEEe
Confidence            999999998 45889988766

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=6.5e-25  Score=168.36  Aligned_cols=127  Identities=31%  Similarity=0.370  Sum_probs=104.6

Q ss_pred             CCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      +++++||.++++++|||+++++.++++|++|+|+|++|++|++++|+|+.+ |++|++++++++|++.++++|+++++|+
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~lGa~~~i~~   79 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEAATY   79 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEEEEG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccccccceeeeh
Confidence            578999999999999999998899999999999998999999999999995 9999999999999999999999999998


Q ss_pred             CCcc-ccccCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCCCC
Q 025278          204 TKEN-IEDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVPK  254 (255)
Q Consensus       204 ~~~~-~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~~~  254 (255)
                      .+.. .....+++|+|||++|..  ...++++++ ++|+++.+|..++..++
T Consensus        80 ~~~~~~~~~~~g~D~v~d~~G~~--~~~~~~~l~-~~G~~v~~G~~~g~~~~  128 (171)
T d1iz0a2          80 AEVPERAKAWGGLDLVLEVRGKE--VEESLGLLA-HGGRLVYIGAAEGEVAP  128 (171)
T ss_dssp             GGHHHHHHHTTSEEEEEECSCTT--HHHHHTTEE-EEEEEEEC-------CC
T ss_pred             hhhhhhhhccccccccccccchh--HHHHHHHHh-cCCcEEEEeCCCCCCCC
Confidence            6532 112356899999999843  456677887 78999999998765443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.90  E-value=3.5e-24  Score=164.33  Aligned_cols=129  Identities=22%  Similarity=0.237  Sum_probs=109.0

Q ss_pred             CCHHhhhccchhHHHHHHHHH----hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE
Q 025278          124 LSFVEAASLPLATETAYEGLE----RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL  199 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~----~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~  199 (255)
                      |++++||.+|++++|||++++    ....++|++|||+||+|++|.+++|+|+.+ |++|++++++++|.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccce
Confidence            588999999999999998764    467889999999999999999999999995 999999999999999999999999


Q ss_pred             EEcCCCccccc----cCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCCCCC
Q 025278          200 AIDYTKENIED----LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVPKF  255 (255)
Q Consensus       200 v~~~~~~~~~~----~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~~~~  255 (255)
                      ++|+++...+.    ..+++|+|||++|+.. +..++.+++ ++|+++.+|..++..+++
T Consensus        80 vi~~~~~~~~~~~~~~~~gvD~vid~vgg~~-~~~~l~~l~-~~Griv~~G~~~g~~~~~  137 (176)
T d1xa0a2          80 VLAREDVMAERIRPLDKQRWAAAVDPVGGRT-LATVLSRMR-YGGAVAVSGLTGGAEVPT  137 (176)
T ss_dssp             EEECC---------CCSCCEEEEEECSTTTT-HHHHHHTEE-EEEEEEECSCCSSSCCCC
T ss_pred             eeecchhHHHHHHHhhccCcCEEEEcCCchh-HHHHHHHhC-CCceEEEeecccCcccCC
Confidence            99987643222    1358999999999775 566678887 799999999988766543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.90  E-value=4.2e-24  Score=164.10  Aligned_cols=124  Identities=25%  Similarity=0.268  Sum_probs=111.4

Q ss_pred             CCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEc
Q 025278          124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~  202 (255)
                      +++++|+.+++++.|+|++++++++++|++|+|+| +|++|++++|+|+.+ |+ +|++++++++|++.++++|+++++|
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~a~~~~g~~VlI~G-aG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~   78 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAELADIEMGSSVVVIG-IGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAKFYGATDILN   78 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHHTTCCTTCCEEEEC-CSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHHHHTCSEEEC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhCCCCCCEEEEEc-CCcchhhhhhhhhcc-cccccccccchhhhHHHHHhhCcccccc
Confidence            57889999999999999999999999999999998 799999999999986 65 7999999999999999999999999


Q ss_pred             CCCcccccc------CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          203 YTKENIEDL------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       203 ~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++++++.+.      .+++|+||||+|++.....++.+++ ++|+++.+|.++.
T Consensus        79 ~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~-~~G~iv~~G~~~~  131 (174)
T d1jqba2          79 YKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVK-PGGIISNINYHGS  131 (174)
T ss_dssp             GGGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEE-EEEEEEECCCCCS
T ss_pred             ccchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHh-cCCEEEEEeecCC
Confidence            987765542      3479999999999888888888888 8999999998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.4e-24  Score=163.69  Aligned_cols=124  Identities=22%  Similarity=0.302  Sum_probs=109.5

Q ss_pred             CCHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEc
Q 025278          124 LSFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~  202 (255)
                      +|+++||+++++++|||+++ +..++++|++|||+|++|++|++++|+|+.+ |+++++++++++|+++++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccc
Confidence            57899999999999999998 5678999999999998899999999999996 999999999999999999999999999


Q ss_pred             CCCcccccc------CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          203 YTKENIEDL------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       203 ~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +++.++.+.      .+++|++||++|+. ....+.++++ ++|+++.+|..+.
T Consensus        80 ~~~~~~~~~i~~~t~~~g~d~v~d~~g~~-~~~~~~~~l~-~~G~iv~~G~~~~  131 (174)
T d1yb5a2          80 HREVNYIDKIKKYVGEKGIDIIIEMLANV-NLSKDLSLLS-HGGRVIVVGSRGT  131 (174)
T ss_dssp             TTSTTHHHHHHHHHCTTCEEEEEESCHHH-HHHHHHHHEE-EEEEEEECCCCSC
T ss_pred             cccccHHHHhhhhhccCCceEEeecccHH-HHHHHHhccC-CCCEEEEEecCCC
Confidence            988776542      45799999999964 4566677787 7899999997553

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.1e-23  Score=162.65  Aligned_cols=127  Identities=28%  Similarity=0.358  Sum_probs=111.8

Q ss_pred             CCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEc
Q 025278          124 LSFVEAASLPLATETAYEGLE-RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~  202 (255)
                      +|+++||.++++++|||+++. ..++++|++|+|+||+|++|++++|+|+.. |++|++++++++|+++++++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCCeEEEE
Confidence            578999999999999999995 578999999999999999999999999995 999999999999999999999999999


Q ss_pred             CCCcccccc------CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCCC
Q 025278          203 YTKENIEDL------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVP  253 (255)
Q Consensus       203 ~~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~~  253 (255)
                      ++++++.+.      .+++|++||++|++. ...+..+++ ++|+++.+|..++..+
T Consensus        80 ~~~~d~~~~v~~~t~g~g~d~v~d~~g~~~-~~~~~~~l~-~~G~~v~~g~~~~~~~  134 (179)
T d1qora2          80 YREEDLVERLKEITGGKKVRVVYDSVGRDT-WERSLDCLQ-RRGLMVSFGNSSGAVT  134 (179)
T ss_dssp             TTTSCHHHHHHHHTTTCCEEEEEECSCGGG-HHHHHHTEE-EEEEEEECCCTTCCCC
T ss_pred             CCCCCHHHHHHHHhCCCCeEEEEeCccHHH-HHHHHHHHh-cCCeeeecccccCCcc
Confidence            988886653      357999999999764 556677777 7899999998776544

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.89  E-value=2.5e-23  Score=159.30  Aligned_cols=128  Identities=28%  Similarity=0.433  Sum_probs=114.4

Q ss_pred             CCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      +++.+||.++++..|||+++++.++++|++|+|+|++|++|++++|++++++..+|++++++++|+++++++|+++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~   80 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINA   80 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeecc
Confidence            57889999999999999999999999999999999889999999999999744788899999999999999999999998


Q ss_pred             CCcccccc------CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCC
Q 025278          204 TKENIEDL------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEV  252 (255)
Q Consensus       204 ~~~~~~~~------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~  252 (255)
                      ++.++.+.      .+++|++|||+|+......++++++ ++|+++++|.++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~-~~G~iv~~G~~~~~~  134 (170)
T d1jvba2          81 SMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALA-KQGKYVMVGLFGADL  134 (170)
T ss_dssp             TTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEE-EEEEEEECCSSCCCC
T ss_pred             CCcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcc-cCCEEEEeccccCcc
Confidence            87765432      3579999999999988888888888 899999999887654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.5e-23  Score=160.33  Aligned_cols=128  Identities=27%  Similarity=0.305  Sum_probs=110.3

Q ss_pred             CCCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEc
Q 025278          123 NLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       123 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~  202 (255)
                      +.++..+|.+.|+..|+|+++++.++++|++|+|+| +|++|++++|+|+.+ |+++++++++++|+++++++|+++++|
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al~~~~~~~G~~VlI~G-aG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~   80 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVG-IGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVN   80 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEE
T ss_pred             cccHHHHHHHHhHHHHHHHHHHHhCCCCCCEEEEec-cchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEE
Confidence            456677888899999999999999999999999999 799999999999996 999999999999999999999999999


Q ss_pred             CCCccccc-cCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCCC
Q 025278          203 YTKENIED-LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVP  253 (255)
Q Consensus       203 ~~~~~~~~-~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~~  253 (255)
                      +.+.+... ..+++|++||++|.......+..+++ ++|+++.+|..++..+
T Consensus        81 ~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~-~~G~iv~~G~~~~~~~  131 (168)
T d1uufa2          81 SRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLK-RDGTMTLVGAPATPHK  131 (168)
T ss_dssp             TTCHHHHHTTTTCEEEEEECCSSCCCHHHHHTTEE-EEEEEEECCCC-----
T ss_pred             CchhhHHHHhcCCCceeeeeeecchhHHHHHHHHh-cCCEEEEeccCCCCcc
Confidence            88765433 34689999999999888888888888 7899999998776443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.88  E-value=7.3e-23  Score=157.01  Aligned_cols=124  Identities=19%  Similarity=0.221  Sum_probs=107.3

Q ss_pred             CHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEc
Q 025278          125 SFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       125 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~  202 (255)
                      +++++|.+.|++.|+|+++ +.+++++|++|+|+| +|++|++++|+|+.+ |+ +|++++.+++|+++++++|+++++|
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G-~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~   79 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGATDCLN   79 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEEEC
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CChHHHHHHHHHHHh-CCceeeeeccchHHHHHHHHhCCCcccC
Confidence            4678999999999999998 679999999999998 899999999999997 65 6778899999999999999999998


Q ss_pred             CCCcc--ccc-----cCCCccEEEECCCCccceeeeeeccccC-CceEEEEeeccCC
Q 025278          203 YTKEN--IED-----LPEKFDVVFDAVGKMCISIVYQKCDKFQ-EKSLINFGLFRQE  251 (255)
Q Consensus       203 ~~~~~--~~~-----~~~~~d~vid~~G~~~~~~~~~~~~~~~-~G~~v~~G~~~~~  251 (255)
                      +...+  ...     ..+++|++|||+|++.+...+.++++ + .|+++.+|.+.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~-~g~G~~v~vG~~~~~  135 (174)
T d1e3ia2          80 PRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV-LGWGSCTVVGAKVDE  135 (174)
T ss_dssp             GGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBC-TTTCEEEECCCSSSE
T ss_pred             CccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhh-cCCeEEEecCCCCCc
Confidence            75432  111     14689999999999998888899888 6 4999999997764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.4e-22  Score=154.74  Aligned_cols=125  Identities=24%  Similarity=0.299  Sum_probs=106.3

Q ss_pred             CHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCC
Q 025278          125 SFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYT  204 (255)
Q Consensus       125 ~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~  204 (255)
                      +.+.||.+.|+..|+|+++++.++++|++|+|+| +|++|++++|+|+.+ |++|++++++++|+++++++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al~~~~~~~g~~vlI~G-aG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVG-LGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEEC-CSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEC-CCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeecc
Confidence            4567888999999999999999999999999999 699999999999996 99999999999999999999999999875


Q ss_pred             Cc-cc-cccCCCccEEEECCCCcc--ceeeeeeccccCCceEEEEeeccCCC
Q 025278          205 KE-NI-EDLPEKFDVVFDAVGKMC--ISIVYQKCDKFQEKSLINFGLFRQEV  252 (255)
Q Consensus       205 ~~-~~-~~~~~~~d~vid~~G~~~--~~~~~~~~~~~~~G~~v~~G~~~~~~  252 (255)
                      ++ ++ ....+++|+++||+|+..  ....++++++ ++|+++++|.++++.
T Consensus        80 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~-~~G~iv~~G~~~~~~  130 (168)
T d1piwa2          80 EEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMK-VGGRIVSISIPEQHE  130 (168)
T ss_dssp             GTSCHHHHSCSCEEEEEECCSCSTTCCTTTGGGGEE-EEEEEEECCCCCSSC
T ss_pred             chHHHHHhhhcccceEEEEecCCccchHHHHHHHhh-ccceEEEeccccccc
Confidence            43 22 234568999999988654  3445677787 789999999877644

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=5.6e-23  Score=159.15  Aligned_cols=121  Identities=26%  Similarity=0.327  Sum_probs=107.2

Q ss_pred             HhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCC
Q 025278          127 VEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK  205 (255)
Q Consensus       127 ~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~  205 (255)
                      ++||++|++++|||+++ +..++++|++|||+||+|++|++++|+|+.+ |+++++++++++|++.++++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccccccccCCc
Confidence            47899999999999998 5678999999999999999999999999996 999999999999999999999999999988


Q ss_pred             cccccc------CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          206 ENIEDL------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       206 ~~~~~~------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +++.+.      .+++|++||++|+. ....++++++ ++|+++.+|..+.
T Consensus        80 ~~~~~~v~~~t~~~g~d~v~d~~g~~-~~~~~~~~l~-~~G~~v~~G~~~~  128 (183)
T d1pqwa_          80 VDFADEILELTDGYGVDVVLNSLAGE-AIQRGVQILA-PGGRFIELGKKDV  128 (183)
T ss_dssp             STHHHHHHHHTTTCCEEEEEECCCTH-HHHHHHHTEE-EEEEEEECSCGGG
T ss_pred             cCHHHHHHHHhCCCCEEEEEecccch-HHHHHHHHhc-CCCEEEEEccCCC
Confidence            776543      35899999999975 4566778888 7899999997765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=8.8e-23  Score=155.63  Aligned_cols=125  Identities=24%  Similarity=0.313  Sum_probs=111.7

Q ss_pred             CCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      ++++++|.++++++|||+++++.++++|++|+|+| +|++|++++|+|+.+ |++|++++++++|+++++++|+++++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~~~~~~g~~VlV~G-aG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQTNARPGQWVAISG-IGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEee-ccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccc
Confidence            57899999999999999999999999999999998 799999999999996 8999999999999999999999999999


Q ss_pred             CCcccccc----CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          204 TKENIEDL----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       204 ~~~~~~~~----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      .+++..+.    ..+.|.+++++++......+.++++ ++|+++.+|.+.++
T Consensus        79 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~-~~G~iv~~G~~~~~  129 (166)
T d1llua2          79 RQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMAR-RGGTIALVGLPPGD  129 (166)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEECCSCHHHHHHHHTTEE-EEEEEEECCCCSSE
T ss_pred             cchhHHHHHHHhhcCCcccccccccchHHHHHHHHhc-CCcEEEEEEecCCC
Confidence            87765432    3478888889998888888888888 78999999987654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.8e-22  Score=156.16  Aligned_cols=122  Identities=21%  Similarity=0.308  Sum_probs=106.2

Q ss_pred             HHhhhccchhHHHHHHHHH-hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          126 FVEAASLPLATETAYEGLE-RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       126 ~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      ++.+|.+.++.+|||+++. ..++++|++|+|+| +|++|++++|+|+++ |+ +|++++++++|++.++++|+++++|+
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~G-aG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~   80 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEIGADLTLNR   80 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEEC-CCccchhheeccccc-ccccccccccccccccccccccceEEEec
Confidence            4567888999999999995 57899999999999 699999999999996 76 78999999999999999999999999


Q ss_pred             CCcccccc---------CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          204 TKENIEDL---------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       204 ~~~~~~~~---------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+.+..+.         ..++|+||||+|++.....+..+++ ++|+++++|...+
T Consensus        81 ~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~-~~G~iv~~G~~~~  135 (182)
T d1vj0a2          81 RETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR-RGGFYSVAGVAVP  135 (182)
T ss_dssp             TTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEE-EEEEEEECCCCSC
T ss_pred             cccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhc-CCCEEEEEeecCC
Confidence            87664321         3479999999999888888888888 7899999998654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.87  E-value=4.1e-22  Score=153.17  Aligned_cols=126  Identities=16%  Similarity=0.189  Sum_probs=107.7

Q ss_pred             CHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          125 SFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       125 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      +++.||.++|++.|+|+++ +.+++++|++|+|+| +|++|++++|++++++..+|++++.+++|++.++++|+++++|+
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~   81 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISP   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECc
Confidence            4788999999999999998 678999999999999 89999999999999744689999999999999999999999998


Q ss_pred             CCcccc-c------cCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          204 TKENIE-D------LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       204 ~~~~~~-~------~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      .+.+.. +      ..+|+|++||++|.......+...++..+|+++++|.+...
T Consensus        82 ~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~  136 (176)
T d1d1ta2          82 KDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSA  136 (176)
T ss_dssp             GGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTT
T ss_pred             cccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccc
Confidence            765421 1      14689999999999887777766665356999999987654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.87  E-value=4.3e-22  Score=152.77  Aligned_cols=124  Identities=17%  Similarity=0.210  Sum_probs=105.7

Q ss_pred             HHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCC
Q 025278          126 FVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYT  204 (255)
Q Consensus       126 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~  204 (255)
                      |.+||++.|++.|+|+++ +.+++++|++|+|+| +|++|++++|+|++++..+|++++++++|+++++++|+++++|+.
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~G-aGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~   80 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPK   80 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCC
Confidence            456899999999999997 678999999999999 799999999999997445788889999999999999999999986


Q ss_pred             Ccc--cccc-----CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          205 KEN--IEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       205 ~~~--~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +.+  ..+.     .+++|++||++|+......+..+++..+|+++++|....
T Consensus        81 ~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~  133 (174)
T d1p0fa2          81 DYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASP  133 (174)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred             CchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecC
Confidence            544  2221     358999999999998888887777634699999998664

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.2e-22  Score=151.22  Aligned_cols=125  Identities=24%  Similarity=0.358  Sum_probs=108.5

Q ss_pred             CCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHHHcCCCEEEc
Q 025278          124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~~~g~~~v~~  202 (255)
                      +|+++||++ .++.+||+++++.++++|++|+|+| +|++|++++|+|+.+ |+ +|++++++++|+++++++|++++++
T Consensus         1 vS~e~Aal~-epla~a~~a~~~~~~~~gd~VlI~G-~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~   77 (171)
T d1pl8a2           1 VTFEEGALI-EPLSVGIHACRRGGVTLGHKVLVCG-AGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQ   77 (171)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHhCCCCCCEEEEEC-CCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHHHhCCccccc
Confidence            467887765 4556699999999999999999999 799999999999996 76 7999999999999999999999999


Q ss_pred             CCCcccccc--------CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCC
Q 025278          203 YTKENIEDL--------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEV  252 (255)
Q Consensus       203 ~~~~~~~~~--------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~  252 (255)
                      +.+.+..+.        ..++|+||||+|++.....+.++++ ++|+++++|.++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~-~gG~iv~~G~~~~~~  134 (171)
T d1pl8a2          78 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATR-SGGTLVLVGLGSEMT  134 (171)
T ss_dssp             CSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSC-TTCEEEECSCCCSCC
T ss_pred             ccccccccccccccccCCCCceEEEeccCCchhHHHHHHHhc-CCCEEEEEecCCCCC
Confidence            877664332        3589999999999988888899998 899999999987654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.86  E-value=6e-22  Score=152.07  Aligned_cols=123  Identities=19%  Similarity=0.172  Sum_probs=106.6

Q ss_pred             CHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcE-EEEecChhhHHHHHHcCCCEEEc
Q 025278          125 SFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASK-VAATSSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       125 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~v-i~~~~~~~~~~~~~~~g~~~v~~  202 (255)
                      +++.++.++|++.|||+++ +..++++|++|+|+| +|++|++++|+|+.+ |+++ ++++.+++|+++++++|+++++|
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G-~G~iG~~~~~~ak~~-g~~~v~~~~~~~~k~~~a~~~Ga~~~i~   79 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGATHVIN   79 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHTCSEEEE
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeC-CCHHHhhhhhccccc-ccceeeeeccHHHHHHHHHHcCCeEEEe
Confidence            4567889999999999997 678999999999999 699999999999997 6655 56688999999999999999999


Q ss_pred             CCCcccccc-----CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          203 YTKENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       203 ~~~~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ++++++.+.     .+++|+||||+|+......+.+.++ ++|+++++|....
T Consensus        80 ~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~-~~G~i~~~G~~~~  131 (174)
T d1f8fa2          80 SKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALG-ILGKIAVVGAPQL  131 (174)
T ss_dssp             TTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEE-EEEEEEECCCCST
T ss_pred             CCCcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhccc-CceEEEEEeecCC
Confidence            988765542     3579999999999988888888888 8999999998653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.85  E-value=1.8e-21  Score=148.79  Aligned_cols=125  Identities=23%  Similarity=0.314  Sum_probs=105.6

Q ss_pred             CCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      +|+++||++ .++++||+++++.++++|++|+|+| +|++|++++|+|+.+ |++|++++++++|+++++++|++.+++.
T Consensus         1 VS~e~Aal~-ePla~a~~a~~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALL-EPLSVGVHACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTH-HHHHHHHHHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHhCCCCCCEEEEEc-ccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEec
Confidence            467888766 4555699999999999999999998 899999999999995 8999999999999999999999987765


Q ss_pred             CCc--cccc--------cCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCC
Q 025278          204 TKE--NIED--------LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEV  252 (255)
Q Consensus       204 ~~~--~~~~--------~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~  252 (255)
                      +..  +..+        ..+++|+||||+|++.....++++++ ++|+++.+|.+.++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~-~~G~iv~~G~~~~~~  135 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITR-TGGTLMLVGMGSQMV  135 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSC-TTCEEEECSCCSSCC
T ss_pred             cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHh-cCCceEEEecCCCCC
Confidence            432  2111        13579999999999988888889998 899999999887653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.85  E-value=9e-22  Score=152.18  Aligned_cols=118  Identities=31%  Similarity=0.419  Sum_probs=103.2

Q ss_pred             hccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccc
Q 025278          130 ASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENI  208 (255)
Q Consensus       130 a~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~  208 (255)
                      +.++++++|||+++ +..++++|++|||+||+|++|++++|+|+.. |++||+++++++|.++++++|+++++++.++++
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~   86 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNS   86 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSC
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhhhhhcccccccH
Confidence            56788999999999 4789999999999999999999999999995 999999999999999999999999999988765


Q ss_pred             ccc------CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          209 EDL------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       209 ~~~------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+.      .+++|+|||++|++ ....+..+++ ++|+++.+|..++
T Consensus        87 ~~~~~~~~~~~Gvd~v~D~vG~~-~~~~~~~~l~-~~G~~v~~G~~~~  132 (182)
T d1v3va2          87 LEEALKKASPDGYDCYFDNVGGE-FLNTVLSQMK-DFGKIAICGAISV  132 (182)
T ss_dssp             HHHHHHHHCTTCEEEEEESSCHH-HHHHHGGGEE-EEEEEEECCCGGG
T ss_pred             HHHHHHHhhcCCCceeEEecCch-hhhhhhhhcc-CCCeEEeecceee
Confidence            442      45899999999965 4566677777 7899999997653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.85  E-value=2.4e-21  Score=148.36  Aligned_cols=122  Identities=27%  Similarity=0.366  Sum_probs=105.6

Q ss_pred             HHhhhccchhHHHHHHHHHhc--ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          126 FVEAASLPLATETAYEGLERS--AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       126 ~~~aa~l~~~~~ta~~~l~~~--~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      +.++|.++++++|||+++++.  .+++|++|+|.| +|++|++++|+|+++++.++++++++++|+++++++|+++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~G-aG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~   84 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVG-VGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDA   84 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEET
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeC-CChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecC
Confidence            467889999999999999653  589999999999 79999999999999755677788999999999999999999999


Q ss_pred             CCcccccc-----CCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          204 TKENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       204 ~~~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .++++...     .+++|+||||+|+......++.+++ ++|+++++|..+
T Consensus        85 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~-~~G~iv~~G~~~  134 (172)
T d1h2ba2          85 RRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG-RMGRLIIVGYGG  134 (172)
T ss_dssp             TSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE-EEEEEEECCCSS
T ss_pred             cccHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHh-CCCEEEEEeCcc
Confidence            87665432     3579999999999988888888888 789999999744

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.85  E-value=3.5e-21  Score=147.97  Aligned_cols=123  Identities=17%  Similarity=0.191  Sum_probs=102.4

Q ss_pred             CHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          125 SFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       125 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      ++++||.++|++.|+|+++ +++++++|++|+|+| +|++|++++|+|++++..+|++++++++|+++++++|+++++|+
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~G-aGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~   80 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEec-chhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeC
Confidence            4678999999999999998 578999999999999 68999999999999744567778899999999999999999988


Q ss_pred             CCc--cccc-----cCCCccEEEECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          204 TKE--NIED-----LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       204 ~~~--~~~~-----~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .+.  +..+     ..+++|+|||++|.......+..+.+ ++|+++.++...
T Consensus        81 ~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~-~g~~~~~v~~~~  132 (176)
T d2fzwa2          81 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH-KGWGVSVVVGVA  132 (176)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBC-TTTCEEEECSCC
T ss_pred             CchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhc-CCceeEEEEeec
Confidence            543  2221     13589999999999888888888887 667777776544

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=9.7e-22  Score=150.84  Aligned_cols=128  Identities=20%  Similarity=0.180  Sum_probs=107.1

Q ss_pred             CCHHhhhccchhHHHHHHHHH---hcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCE
Q 025278          124 LSFVEAASLPLATETAYEGLE---RSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADL  199 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~---~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~  199 (255)
                      +|+.+|+.++++.+|||+++.   ... ..++++|||+||+|++|.+++|+||.+ |++||+++++++|.+.++++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhcccc
Confidence            578899999999999998763   333 445669999999999999999999996 999999999999999999999999


Q ss_pred             EEcCCCcccccc--CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCCCC
Q 025278          200 AIDYTKENIEDL--PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVPK  254 (255)
Q Consensus       200 v~~~~~~~~~~~--~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~~~  254 (255)
                      ++|+++.++.+.  ....|.++|++|+.. ...++.+++ ++|+++.+|..++..++
T Consensus        80 vi~~~~~~~~~~l~~~~~~~vvD~Vgg~~-~~~~l~~l~-~~Griv~~G~~~~~~~~  134 (177)
T d1o89a2          80 VLPRDEFAESRPLEKQVWAGAIDTVGDKV-LAKVLAQMN-YGGCVAACGLAGGFTLP  134 (177)
T ss_dssp             EEEGGGSSSCCSSCCCCEEEEEESSCHHH-HHHHHHTEE-EEEEEEECCCTTCSCCC
T ss_pred             ccccccHHHHHHHHhhcCCeeEEEcchHH-HHHHHHHhc-cccceEeecccCCcccc
Confidence            999987665543  235799999999865 455567777 78999999998875443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=5.1e-21  Score=149.24  Aligned_cols=125  Identities=21%  Similarity=0.244  Sum_probs=106.8

Q ss_pred             HhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCc
Q 025278          127 VEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKE  206 (255)
Q Consensus       127 ~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~  206 (255)
                      ++.+++...+.|||++++++++++|++|+|+| +|++|++++++|+.+++.+|++++.+++|++.++++|+++++++.++
T Consensus         2 ~d~~~l~d~~~ta~~a~~~a~v~~G~tVlV~G-aG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~   80 (195)
T d1kola2           2 RDLTCLSDILPTGYHGAVTAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDT   80 (195)
T ss_dssp             HHHGGGGTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSS
T ss_pred             chHHhcccHHHHHHHHHHHhCCCCCCEEEEEC-cCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCc
Confidence            57788899999999999999999999999999 79999999999999755588899999999999999999999999877


Q ss_pred             ccccc------CCCccEEEECCCCc---------------cceeeeeeccccCCceEEEEeeccCCCC
Q 025278          207 NIEDL------PEKFDVVFDAVGKM---------------CISIVYQKCDKFQEKSLINFGLFRQEVP  253 (255)
Q Consensus       207 ~~~~~------~~~~d~vid~~G~~---------------~~~~~~~~~~~~~~G~~v~~G~~~~~~~  253 (255)
                      ++.+.      ..++|++||++|.+               .....+.+.++ ++|+++.+|.+.++.|
T Consensus        81 ~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r-~gG~v~~~G~~~~~~~  147 (195)
T d1kola2          81 PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTR-VAGKIGIPGLYVTEDP  147 (195)
T ss_dssp             CHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEE-EEEEEEECSCCCSCCT
T ss_pred             CHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHh-cCCEEEEeeecCCCcc
Confidence            76442      35899999999944               34555677777 8999999998776543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.84  E-value=1.8e-21  Score=151.36  Aligned_cols=125  Identities=18%  Similarity=0.287  Sum_probs=102.7

Q ss_pred             CCHHhhhccchhHHHHHHHHH-hcccCCCCEEEEE-cCCchHHHHHHHHHHHhcCCcEEEEecChh----hHHHHHHcCC
Q 025278          124 LSFVEAASLPLATETAYEGLE-RSAFSAGKSILVL-GGAGGVGTMVIQLAKHVFGASKVAATSSTA----KLDLLRSLGA  197 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlI~-ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~----~~~~~~~~g~  197 (255)
                      +|+++||.++++++|||+++. ..++++|++|+|+ ||+|++|++++|+||.+ |++||+++++++    +.+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccc
Confidence            578999999999999999995 6889999998886 77899999999999996 999999986543    4566789999


Q ss_pred             CEEEcCCCccccc-----------cCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          198 DLAIDYTKENIED-----------LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       198 ~~v~~~~~~~~~~-----------~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      ++++++++.+..+           ..+++|++||++|++.. ..+.++++ ++|+++.+|..++.
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~-~~~~~~l~-~~G~~v~~G~~~~~  142 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSS-TGIARKLN-NNGLMLTYGGMSFQ  142 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHH-HHHHHTSC-TTCEEEECCCCSSC
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcchh-hhhhhhhc-CCcEEEEECCccCC
Confidence            9999886543322           13579999999997764 44567777 89999999987664

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.84  E-value=2.9e-21  Score=147.22  Aligned_cols=125  Identities=27%  Similarity=0.345  Sum_probs=111.3

Q ss_pred             CCHHhhhccchhHHHHHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          124 LSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      +|+++||+++++++|||+++++.++++|++|+|+| +|++|++++++++.. |++|++++++++|+++++++|++.++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~~~~~~g~~vlv~G-~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYG-IGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEee-cccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhcCcceeccc
Confidence            57899999999999999999999999999999998 799999999999995 9999999999999999999999999999


Q ss_pred             CCcccccc----CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          204 TKENIEDL----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       204 ~~~~~~~~----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      .++++.+.    .++.|.+++++++......+..+++ ++|+++.+|..+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~-~~G~i~~~g~~~~~  129 (168)
T d1rjwa2          79 LKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIR-RGGACVLVGLPPEE  129 (168)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEE-EEEEEEECCCCSSE
T ss_pred             ccchhhhhcccccCCCceEEeecCCHHHHHHHHHHhc-cCCceEecccccCC
Confidence            88765542    3567777788888888888888888 89999999987654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.83  E-value=1.4e-20  Score=144.35  Aligned_cols=125  Identities=13%  Similarity=0.126  Sum_probs=103.0

Q ss_pred             CHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          125 SFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       125 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      ++++||.++|++.|+|+++ +.+++++|++|+|+| +|++|++++++++..++.+|++++++++|++.++++|+++++|+
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G-~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~   80 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNP   80 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEe-cCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcC
Confidence            4678999999999999998 678999999999999 89999999999998766688899999999999999999999998


Q ss_pred             CCccc--ccc-----CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          204 TKENI--EDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       204 ~~~~~--~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+++.  .+.     .+++|++||++|+......+..+.+..+++++.+|..++
T Consensus        81 ~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~  134 (175)
T d1cdoa2          81 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL  134 (175)
T ss_dssp             GGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSS
T ss_pred             CCcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCC
Confidence            65542  111     358999999999988888777776633455555665443

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.83  E-value=1.6e-20  Score=144.27  Aligned_cols=125  Identities=18%  Similarity=0.251  Sum_probs=102.8

Q ss_pred             CHHhhhccchhHHHHHHHH-HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          125 SFVEAASLPLATETAYEGL-ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       125 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      ++++||.++|++.|+|+++ +.+++++|++|+|+| +|++|++++++++.+++.+|++++++++|++.++++|+++++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~G-aGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~   80 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEEC-CCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEec
Confidence            4678999999999999998 678999999999999 68999999999999756789999999999999999999999987


Q ss_pred             CCcc--ccc-----cCCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          204 TKEN--IED-----LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       204 ~~~~--~~~-----~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .+.+  ..+     ..+++|++||++|.......+..+++..+|+++..+...+
T Consensus        81 ~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~  134 (176)
T d2jhfa2          81 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPD  134 (176)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCT
T ss_pred             CCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCC
Confidence            5432  211     1358999999999998888888888733355555555443

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.2e-20  Score=144.80  Aligned_cols=117  Identities=29%  Similarity=0.439  Sum_probs=91.6

Q ss_pred             ccchhHHHHHHHH-HhcccCCC--CEEEEEcCCchHHHHHHHHHHHhcCCcEE-EEecChhhHH-HHHHcCCCEEEcCCC
Q 025278          131 SLPLATETAYEGL-ERSAFSAG--KSILVLGGAGGVGTMVIQLAKHVFGASKV-AATSSTAKLD-LLRSLGADLAIDYTK  205 (255)
Q Consensus       131 ~l~~~~~ta~~~l-~~~~~~~g--~~VlI~ga~g~~G~~a~~~a~~~~g~~vi-~~~~~~~~~~-~~~~~g~~~v~~~~~  205 (255)
                      +++++.+|||+++ +..++++|  ++|||+||+|++|++++|+|+.+ |++++ .++.++++.. .++++|+++++|+.+
T Consensus         8 alg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~-Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~   86 (187)
T d1vj1a2           8 AIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLL-GCSRVVGICGTQEKCLFLTSELGFDAAVNYKT   86 (187)
T ss_dssp             TTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHT-TCSEEEEEESSHHHHHHHHHHSCCSEEEETTS
T ss_pred             HhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHc-CCcceecccchHHHHhhhhhcccceEEeeccc
Confidence            4778899999999 56788887  89999999999999999999996 77654 4566666555 456899999999998


Q ss_pred             cccccc-----CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          206 ENIEDL-----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       206 ~~~~~~-----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +++.+.     .+|+|+|||++|+.. ...+..+++ ++|+++.+|..++
T Consensus        87 ~~~~~~~~~~~~~GvDvv~D~vGg~~-~~~~~~~l~-~~G~iv~~G~~s~  134 (187)
T d1vj1a2          87 GNVAEQLREACPGGVDVYFDNVGGDI-SNTVISQMN-ENSHIILCGQISQ  134 (187)
T ss_dssp             SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEE-EEEEEEEC-----
T ss_pred             hhHHHHHHHHhccCceEEEecCCchh-HHHHhhhcc-ccccEEEeccccc
Confidence            876653     468999999999765 455677777 7899999998654

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=2.8e-20  Score=141.22  Aligned_cols=115  Identities=26%  Similarity=0.259  Sum_probs=94.0

Q ss_pred             hHHHHHHH---HH-hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc
Q 025278          135 ATETAYEG---LE-RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED  210 (255)
Q Consensus       135 ~~~ta~~~---l~-~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  210 (255)
                      +.+|||.+   +. ....+++++|||+||+|++|.+++|+|+.+ |++|++++++++|.++++++|+++++++++...+.
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~   82 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVISREDVYDGT   82 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSC
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhcccceEeccchhchh
Confidence            45677755   43 345667889999999999999999999996 99999999999999999999999999876433222


Q ss_pred             c----CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCC
Q 025278          211 L----PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEV  252 (255)
Q Consensus       211 ~----~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~  252 (255)
                      .    .+++|+|||++|+... ..++.+++ ++|+++.+|..++..
T Consensus        83 ~~~~~~~gvd~vid~vgg~~~-~~~~~~l~-~~G~iv~~G~~~g~~  126 (167)
T d1tt7a2          83 LKALSKQQWQGAVDPVGGKQL-ASLLSKIQ-YGGSVAVSGLTGGGE  126 (167)
T ss_dssp             CCSSCCCCEEEEEESCCTHHH-HHHHTTEE-EEEEEEECCCSSCSC
T ss_pred             hhcccCCCceEEEecCcHHHH-HHHHHHhc-cCceEEEeeccCCCc
Confidence            2    3589999999997764 55677777 799999999988754

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.74  E-value=3.1e-17  Score=121.26  Aligned_cols=133  Identities=17%  Similarity=0.184  Sum_probs=100.1

Q ss_pred             eEEEEccc--CCC-ccceEEeecccCCCCCCCeEEEEEeEeecChHhHHHHcCCCCCCCCCCCcccccceEEEEEEeCCC
Q 025278            2 KAWVYKEY--GNS-QSVLKFETNVEVPSLREDQVLIKVVAAALNPIDFKRMLGAFSATDSPLPTIPGYDVAGVVEKVGSQ   78 (255)
Q Consensus         2 ka~v~~~~--~~~-~~~l~~~~~~~~p~~~~~eV~V~v~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~~G~~   78 (255)
                      |+|++.++  |.+ .+.|+++ +.+.|+|++|||+||++|.++++........      .+....+..+++|+|++  |+
T Consensus         5 k~~vl~~~P~G~P~~~~f~l~-e~~ip~~~~gevLvk~~~~svDp~~R~~~~~------~~~g~~~~g~~vg~Vv~--S~   75 (147)
T d1v3va1           5 KSWTLKKHFQGKPTQSDFELK-TVELPPLKNGEVLLEALFLSVDPYMRIASKR------LKEGAVMMGQQVARVVE--SK   75 (147)
T ss_dssp             EEEEESSCCCSSCCGGGEEEE-EEECCCCCTTCEEEEEEEEECCTHHHHHGGG------SCTTSBCCCCEEEEEEE--ES
T ss_pred             EEEEEccCCCCCCcccceEEE-EEECCCCCCCEEEEEEEEEeEcccccccccc------cccCCccccceEEEEEE--eC
Confidence            68888876  443 2458999 8999999999999999999999876543321      22334566688999988  77


Q ss_pred             CCCCCCCCEEEeccCccccCCCCCCcceeeEEeeeCCceEeCCCCCCHH-----hhhccchhHHHHHH-HHHhcccCCCC
Q 025278           79 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFV-----EAASLPLATETAYE-GLERSAFSAGK  152 (255)
Q Consensus        79 v~~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~-----~aa~l~~~~~ta~~-~l~~~~~~~g~  152 (255)
                      +++|++||+|++            .++|+||.+.+...+.++|++++..     ..+.+....+||++ .+ ....+.|+
T Consensus        76 ~~~f~~GD~V~g------------~~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl-~~~~k~Ge  142 (147)
T d1v3va1          76 NSAFPAGSIVLA------------QSGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEM-LNGANLGK  142 (147)
T ss_dssp             CTTSCTTCEEEE------------CCCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHH-HTTCCSSE
T ss_pred             CCcccCCCEEEE------------ccCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHh-hCCCCCCC
Confidence            889999999997            4789999999999999998765432     23455666666544 55 33346799


Q ss_pred             EEEE
Q 025278          153 SILV  156 (255)
Q Consensus       153 ~VlI  156 (255)
                      +|++
T Consensus       143 tvv~  146 (147)
T d1v3va1         143 AVVT  146 (147)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9987

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.3e-15  Score=99.17  Aligned_cols=73  Identities=29%  Similarity=0.356  Sum_probs=66.7

Q ss_pred             CCHHhhhccchhHHHHHHHHH----hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC
Q 025278          124 LSFVEAASLPLATETAYEGLE----RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA  197 (255)
Q Consensus       124 ~~~~~aa~l~~~~~ta~~~l~----~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~  197 (255)
                      +|+++++.++++..|||.++.    ....+++++|+|+|++|++|.+++|+++.+ |++|++++++++|.++++++||
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~-G~~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHHCCC
Confidence            578899999999999998873    356789999999999999999999999996 9999999999999999999985

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.13  E-value=3.9e-06  Score=63.47  Aligned_cols=76  Identities=24%  Similarity=0.200  Sum_probs=56.6

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-Hc----C-CCEEEcCCC-ccccccCCCccEEEE
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SL----G-ADLAIDYTK-ENIEDLPEKFDVVFD  220 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~----g-~~~v~~~~~-~~~~~~~~~~d~vid  220 (255)
                      --.|++++|+||+|++|...+..+... |++|++++++.++.+.+. ++    . .....|..+ ....+..+++|++|+
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhh-ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence            457899999999999999988888774 999999999999887653 22    2 223344433 234445678999999


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      ++|.
T Consensus        99 ~Ag~  102 (191)
T d1luaa1          99 AGAI  102 (191)
T ss_dssp             CCCT
T ss_pred             cCcc
Confidence            9883

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.1e-05  Score=61.74  Aligned_cols=75  Identities=25%  Similarity=0.315  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE--EcCCCccc----cccCCCccEEEEC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA--IDYTKENI----EDLPEKFDVVFDA  221 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v--~~~~~~~~----~~~~~~~d~vid~  221 (255)
                      -.|+++||+||++++|.+.++.+... |++|+++++++++++.+ ++++....  .|-.+.+.    .+..+.+|+++++
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnn   83 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEec
Confidence            37899999999999999988888774 99999999999988766 45553332  33333221    1123579999999


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      .|.
T Consensus        84 Ag~   86 (244)
T d1pr9a_          84 AAV   86 (244)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            884

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=3.1e-05  Score=60.64  Aligned_cols=74  Identities=22%  Similarity=0.254  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEE--cCCCccc-c---ccCCCccEEEECC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAI--DYTKENI-E---DLPEKFDVVFDAV  222 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~--~~~~~~~-~---~~~~~~d~vid~~  222 (255)
                      .|+++||+||++++|.+.++.+... |++|+++++++++++.+ ++++....+  |-.+.+. .   +..+++|++++++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnA   82 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNA   82 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECC
Confidence            6899999999999999988877774 99999999999888766 455432222  3322221 1   1235799999998


Q ss_pred             CC
Q 025278          223 GK  224 (255)
Q Consensus       223 G~  224 (255)
                      |.
T Consensus        83 g~   84 (242)
T d1cyda_          83 AL   84 (242)
T ss_dssp             CC
T ss_pred             cc
Confidence            83

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=3.4e-05  Score=59.19  Aligned_cols=100  Identities=18%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCCCE--EEcCCCccccccCCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGADL--AIDYTKENIEDLPEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~  214 (255)
                      .++...+++|++||-+| +|. |..++.+|+..+ ..+|+.++.+++..+.+++    .+.+.  .+..+..+.....+.
T Consensus        67 ~l~~l~l~~g~~VLdiG-~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIG-GGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHhhhccccceEEEec-Ccc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            45778899999999999 555 888888988763 3679999999988877753    34322  222221111112346


Q ss_pred             ccEEEECCCCccceeeeeeccccCCceEEE
Q 025278          215 FDVVFDAVGKMCISIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       215 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~  244 (255)
                      +|+|+.+.+-......+.+.++ ++|+++.
T Consensus       145 fD~I~~~~~~~~~p~~l~~~Lk-pGG~lv~  173 (213)
T d1dl5a1         145 YDVIFVTVGVDEVPETWFTQLK-EGGRVIV  173 (213)
T ss_dssp             EEEEEECSBBSCCCHHHHHHEE-EEEEEEE
T ss_pred             hhhhhhhccHHHhHHHHHHhcC-CCcEEEE
Confidence            9999988776665566677777 8999877

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.86  E-value=2.6e-05  Score=61.29  Aligned_cols=75  Identities=24%  Similarity=0.341  Sum_probs=56.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE-EcCCCcc-ccc-------cCCCccEEE
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA-IDYTKEN-IED-------LPEKFDVVF  219 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v-~~~~~~~-~~~-------~~~~~d~vi  219 (255)
                      -.|+++||+||++++|.+.++.+.. .|++|++.++++++.+.+++.+...+ .|-.+.+ ..+       ..+++|++|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAR-EGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            4789999999999999998887777 49999999999999888888876432 2322221 111       124799999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      +++|.
T Consensus        82 nnAG~   86 (248)
T d2d1ya1          82 NNAAI   86 (248)
T ss_dssp             ECCCC
T ss_pred             EeCcC
Confidence            99883

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.84  E-value=3.5e-05  Score=60.28  Aligned_cols=74  Identities=26%  Similarity=0.368  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEE-EcCCCcc-ccc-------cCCCccEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLA-IDYTKEN-IED-------LPEKFDVVF  219 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v-~~~~~~~-~~~-------~~~~~d~vi  219 (255)
                      .|++++|+||++++|.+.++.+... |++|+++++++++++.+. ++++..+ .|-.+.+ ..+       ..+.+|++|
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~-G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   82 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKE-GARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            5899999999999999988888774 999999999999888764 5665432 2322221 111       124799999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      +++|.
T Consensus        83 nnAG~   87 (242)
T d1ulsa_          83 HYAGI   87 (242)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99984

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=3.2e-05  Score=60.82  Aligned_cols=74  Identities=27%  Similarity=0.423  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEE--cCCCcc-ccc-------cCCCccEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAI--DYTKEN-IED-------LPEKFDVV  218 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~--~~~~~~-~~~-------~~~~~d~v  218 (255)
                      .|+++||+||++++|.+.++.+.. .|++|++.++++++++.+. +++....+  |-.+.+ ..+       ..+++|++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil   83 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVN-SGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   83 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            689999999999999998887777 4999999999999988775 44432322  222221 111       12479999


Q ss_pred             EECCCC
Q 025278          219 FDAVGK  224 (255)
Q Consensus       219 id~~G~  224 (255)
                      |+++|.
T Consensus        84 VnnAG~   89 (250)
T d1ydea1          84 VNNAGH   89 (250)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            999983

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.82  E-value=1.3e-05  Score=58.63  Aligned_cols=95  Identities=19%  Similarity=0.216  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcC--CCEEEcCCCccccccCCCccEEEECCC--Cc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLG--ADLAIDYTKENIEDLPEKFDVVFDAVG--KM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~~~d~vid~~G--~~  225 (255)
                      +..+|+|+| +|..|+.+++.|+.+ |++|.++|.+.++++.+++..  .......+.....+.....|+||.++=  +.
T Consensus        31 ~pa~V~ViG-aGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          31 KPGKVVILG-GGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCcEEEEEC-CChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            356899999 899999999999997 999999999999999887643  223333344444444567899998843  22


Q ss_pred             cceee----eeeccccCCceEEEEee
Q 025278          226 CISIV----YQKCDKFQEKSLINFGL  247 (255)
Q Consensus       226 ~~~~~----~~~~~~~~~G~~v~~G~  247 (255)
                      .+...    ..+.++ ++..++-+..
T Consensus       109 ~aP~lIt~~mv~~Mk-~GSVIVDvai  133 (168)
T d1pjca1         109 RAPILVPASLVEQMR-TGSVIVDVAV  133 (168)
T ss_dssp             SCCCCBCHHHHTTSC-TTCEEEETTC
T ss_pred             ccCeeecHHHHhhcC-CCcEEEEeec
Confidence            22222    234444 5566665543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=4e-05  Score=60.90  Aligned_cols=43  Identities=26%  Similarity=0.414  Sum_probs=38.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      -.|+++||+||++++|.+.+..+... |++|+++++++++++.+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~-G~~Vil~~r~~~~l~~~   54 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKM-GAHVVVTARSKETLQKV   54 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH
Confidence            47899999999999999988877774 99999999999988766

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3.4e-05  Score=60.51  Aligned_cols=76  Identities=28%  Similarity=0.408  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc-CCCE-EEcCCCcccc----ccCCCccEEEECC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL-GADL-AIDYTKENIE----DLPEKFDVVFDAV  222 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~-g~~~-v~~~~~~~~~----~~~~~~d~vid~~  222 (255)
                      -.|+++||+||++++|.+.++.+... |++|+++++++++++.+.+. +... +.|....+..    +...++|+++++.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~-G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~a   82 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFARE-GAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVA   82 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEecc
Confidence            46899999999999999988888874 99999999999988877553 3222 2222221111    1235899999998


Q ss_pred             CCc
Q 025278          223 GKM  225 (255)
Q Consensus       223 G~~  225 (255)
                      |..
T Consensus        83 g~~   85 (245)
T d2ag5a1          83 GFV   85 (245)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            843

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.71  E-value=3.7e-05  Score=60.65  Aligned_cols=74  Identities=20%  Similarity=0.296  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE---EcCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA---IDYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v---~~~~~~~-~~~-------~~~~~d~  217 (255)
                      +|++++|+||++++|.+.++.+... |++|+++++++++++.+ +++|....   .|-.+++ ..+       ..+.+|+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVRE-GARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHT-TEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            5889999999999999988887774 99999999999888765 57775543   2322221 111       1247999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      ++++.|.
T Consensus        83 lVnnAg~   89 (256)
T d1k2wa_          83 LVNNAAL   89 (256)
T ss_dssp             EEECCCC
T ss_pred             EEeeccc
Confidence            9999883

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.71  E-value=2.3e-05  Score=58.06  Aligned_cols=49  Identities=31%  Similarity=0.441  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA  200 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v  200 (255)
                      +..+|+|+| +|..|+.|++.|+.+ |++|.++|.+.++++.+++++...+
T Consensus        28 ~pa~VvViG-aGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i   76 (183)
T d1l7da1          28 PPARVLVFG-VGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFI   76 (183)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEEC
T ss_pred             CCcEEEEEc-CcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceE
Confidence            345899999 899999999999997 9999999999999999999987654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.70  E-value=0.00015  Score=53.16  Aligned_cols=74  Identities=16%  Similarity=0.267  Sum_probs=54.4

Q ss_pred             HHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHHH-HcCCCEEEcCCCccccccCCCccEE
Q 025278          141 EGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLLR-SLGADLAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       141 ~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~d~v  218 (255)
                      ..++...+.++++|+|+| +|+.+.+++..++.. |. ++.++.|+.+|.+.+. .++... ++...      ...+|++
T Consensus         7 ~~l~~~~~~~~~~vlIlG-aGGaarai~~aL~~~-g~~~I~I~nR~~~ka~~L~~~~~~~~-~~~~~------~~~~Dli   77 (167)
T d1npya1           7 KLIEKYHLNKNAKVIVHG-SGGMAKAVVAAFKNS-GFEKLKIYARNVKTGQYLAALYGYAY-INSLE------NQQADIL   77 (167)
T ss_dssp             HHHHHTTCCTTSCEEEEC-SSTTHHHHHHHHHHT-TCCCEEEECSCHHHHHHHHHHHTCEE-ESCCT------TCCCSEE
T ss_pred             HHHHHcCCCCCCeEEEEC-CCHHHHHHHHHHHHC-CCCEEEEecccHHHHHHHHHhhhhhh-hhccc------ccchhhh
Confidence            345666777788999999 899999999988886 64 7788889999877664 555433 22211      2368999


Q ss_pred             EECCC
Q 025278          219 FDAVG  223 (255)
Q Consensus       219 id~~G  223 (255)
                      |+|+.
T Consensus        78 INaTp   82 (167)
T d1npya1          78 VNVTS   82 (167)
T ss_dssp             EECSS
T ss_pred             eeccc
Confidence            99976

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.70  E-value=5.2e-05  Score=59.69  Aligned_cols=74  Identities=28%  Similarity=0.319  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEEcC-CCccccc----------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAIDY-TKENIED----------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~~~-~~~~~~~----------~~~~~d~  217 (255)
                      .|++++|+||++++|.+.++.+... |++|++.++++++++.+ ++++....+-. +-.+..+          ..+.+|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGE-GAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            6899999999999999988877774 99999999999888765 56775543322 1111111          1247999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +++++|.
T Consensus        84 lVnnAG~   90 (253)
T d1hxha_          84 LVNNAGI   90 (253)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9999994

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=5.3e-05  Score=59.32  Aligned_cols=75  Identities=23%  Similarity=0.261  Sum_probs=54.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE---EcCCCcc-ccc-------cCCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA---IDYTKEN-IED-------LPEKFD  216 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v---~~~~~~~-~~~-------~~~~~d  216 (255)
                      -.|++++|+||++++|.+.++.+... |++|++.++++++++.+ ++++....   .|-.+++ ..+       ..+++|
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAE-GAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCe
Confidence            36899999999999999988877774 99999999999988766 45653322   2222221 111       124799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++++++|.
T Consensus        83 ilinnAG~   90 (244)
T d1nffa_          83 VLVNNAGI   90 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999984

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.68  E-value=5e-05  Score=59.83  Aligned_cols=74  Identities=27%  Similarity=0.347  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE---EcCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA---IDYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v---~~~~~~~-~~~-------~~~~~d~  217 (255)
                      +|+++||+||++++|.+.++.+... |++|++.++++++++.+ ++++....   .|-.+++ ..+       ..+.+|+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAA-GARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccE
Confidence            6899999999999999988877774 99999999999888765 56664322   2222221 111       1247999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +|+++|.
T Consensus        83 lVnnAg~   89 (254)
T d1hdca_          83 LVNNAGI   89 (254)
T ss_dssp             EEECCCC
T ss_pred             EEecCcc
Confidence            9999883

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00011  Score=57.53  Aligned_cols=76  Identities=16%  Similarity=0.274  Sum_probs=53.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCE-E--EcCCCccc-c-------ccCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADL-A--IDYTKENI-E-------DLPE  213 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~-v--~~~~~~~~-~-------~~~~  213 (255)
                      -.|++++|+||++++|...+..+.. .|++|+++++++++++.+    ++.|... .  .|..+.+. .       +..+
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~-~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAK-LKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999987776666 499999999999988755    3445332 2  23322211 1       1235


Q ss_pred             CccEEEECCCCc
Q 025278          214 KFDVVFDAVGKM  225 (255)
Q Consensus       214 ~~d~vid~~G~~  225 (255)
                      .+|++|+++|..
T Consensus        84 ~idilinnag~~   95 (244)
T d1yb1a_          84 DVSILVNNAGVV   95 (244)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCceeEeecccc
Confidence            799999999943

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.65  E-value=4.7e-05  Score=60.73  Aligned_cols=73  Identities=23%  Similarity=0.352  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE---EcCCCcc-ccc-------cCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA---IDYTKEN-IED-------LPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v---~~~~~~~-~~~-------~~~~~d~  217 (255)
                      .|+++||+||++++|.+.+..+... |++|+++++++++++.+ +++|.+..   .|..+.+ ..+       ..+.+|+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAE-GAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCccc
Confidence            5899999999999999988887774 99999999999988765 45664332   2222221 111       1247999


Q ss_pred             EEECCC
Q 025278          218 VFDAVG  223 (255)
Q Consensus       218 vid~~G  223 (255)
                      +++++|
T Consensus        83 lvnnAG   88 (276)
T d1bdba_          83 LIPNAG   88 (276)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            999988

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=6.5e-05  Score=58.73  Aligned_cols=74  Identities=24%  Similarity=0.368  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCE---EEcCCCcc-cc-------ccCCCccE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADL---AIDYTKEN-IE-------DLPEKFDV  217 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~---v~~~~~~~-~~-------~~~~~~d~  217 (255)
                      +|++++|+||++++|.+.++.+... |++|++.++++++++.+ ++++...   ..|-.+.+ ..       +..+++|+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~-G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAAR-GAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDI   81 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcce
Confidence            5899999999999999988877774 99999999999988766 4555332   23333221 11       11357999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      +++++|.
T Consensus        82 lVnnAg~   88 (243)
T d1q7ba_          82 LVNNAGI   88 (243)
T ss_dssp             EEECCCC
T ss_pred             ehhhhhh
Confidence            9999883

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.62  E-value=0.00012  Score=58.70  Aligned_cols=76  Identities=21%  Similarity=0.308  Sum_probs=53.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-----HHcCCCE-EEcCCCccccc----------cC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-----RSLGADL-AIDYTKENIED----------LP  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-----~~~g~~~-v~~~~~~~~~~----------~~  212 (255)
                      -.|+++||+||++++|.+.+..+... |++|+++++++++++.+     ++.|... .+..+-.+...          ..
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~-Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSL-GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence            36799999999999999988777774 99999999998876543     2344332 33222222111          13


Q ss_pred             CCccEEEECCCCc
Q 025278          213 EKFDVVFDAVGKM  225 (255)
Q Consensus       213 ~~~d~vid~~G~~  225 (255)
                      +++|+++++.|..
T Consensus       102 g~iDilvnnAg~~  114 (294)
T d1w6ua_         102 GHPNIVINNAAGN  114 (294)
T ss_dssp             CSCSEEEECCCCC
T ss_pred             cccchhhhhhhhc
Confidence            5799999999843

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.62  E-value=0.0001  Score=58.38  Aligned_cols=74  Identities=28%  Similarity=0.465  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCC---CEEE--cCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGA---DLAI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~---~~v~--~~~~~~-~~~-------~~~~~  215 (255)
                      .|+++||+||++++|.+.++.+... |++|+++++++++++.+ ++++.   ...+  |-.+++ ...       ..+.+
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRY-GAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   83 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence            6899999999999999988877774 99999999999988766 34442   1222  322221 111       12479


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|+++|.
T Consensus        84 D~lVnnAG~   92 (268)
T d2bgka1          84 DIMFGNVGV   92 (268)
T ss_dssp             CEEEECCCC
T ss_pred             ceecccccc
Confidence            999999983

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.60  E-value=0.0001  Score=57.86  Aligned_cols=74  Identities=26%  Similarity=0.360  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-----HHcCCCEE-E--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-----RSLGADLA-I--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-----~~~g~~~v-~--~~~~~~-~~~-------~~~  213 (255)
                      .|++++|+||++++|.+.++.+... |++|+++++++++++.+     ++.|.+.. +  |-.+++ ..+       ..+
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999988877774 99999999998876543     34464432 2  332221 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++|+++|.
T Consensus        83 ~iDiLVnnAG~   93 (251)
T d1vl8a_          83 KLDTVVNAAGI   93 (251)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999983

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.60  E-value=0.00015  Score=57.17  Aligned_cols=75  Identities=21%  Similarity=0.402  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE---EcCCCcc-c-------cccC-C
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA---IDYTKEN-I-------EDLP-E  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v---~~~~~~~-~-------~~~~-~  213 (255)
                      .|+++||+||++++|.+.++.+.. .|++|+++++++++++.+    ++.+....   .|-.+.+ .       .+.. +
T Consensus         5 ~gK~alITGas~GIG~aia~~la~-~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAG-LGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            689999999999999998877666 499999999999876654    34554432   2332222 1       1112 3


Q ss_pred             CccEEEECCCCc
Q 025278          214 KFDVVFDAVGKM  225 (255)
Q Consensus       214 ~~d~vid~~G~~  225 (255)
                      .+|++++++|..
T Consensus        84 ~idilinnag~~   95 (258)
T d1ae1a_          84 KLNILVNNAGVV   95 (258)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CcEEEecccccc
Confidence            589999999844

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.60  E-value=0.0001  Score=58.22  Aligned_cols=74  Identities=24%  Similarity=0.319  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE---EcCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA---IDYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v---~~~~~~~-~~~-------~~~~  214 (255)
                      .|+++||+||++++|.+.+..+... |++|+++++++++++.+    ++.|.+..   .|-.+++ ..+       ..+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            6899999999999999988777764 99999999999887655    33454322   2222221 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|++.|.
T Consensus        83 iDilVnnaG~   92 (260)
T d1zema1          83 IDFLFNNAGY   92 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCeehhhhcc
Confidence            9999999884

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.60  E-value=0.00014  Score=57.38  Aligned_cols=74  Identities=23%  Similarity=0.389  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE---EcCCCcc-cc-------ccCC-
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA---IDYTKEN-IE-------DLPE-  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v---~~~~~~~-~~-------~~~~-  213 (255)
                      .|+++||+||++++|.+.++.+... |++|++.++++++++.+    ++.|....   .|-.+.+ ..       +..+ 
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            6899999999999999988777774 99999999999887655    23443322   2322221 11       1123 


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|+++++.|.
T Consensus        86 ~idilvnnAG~   96 (259)
T d2ae2a_          86 KLNILVNNAGI   96 (259)
T ss_dssp             CCCEEEECCCC
T ss_pred             CceEEEECCce
Confidence            59999999983

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.59  E-value=0.00012  Score=55.95  Aligned_cols=100  Identities=18%  Similarity=0.106  Sum_probs=70.1

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE--EcCCCccccccCCCc
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA--IDYTKENIEDLPEKF  215 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v--~~~~~~~~~~~~~~~  215 (255)
                      .++...+++|++||.+| + +.|..++.+++.. +.+|+.++.+++-.+.+    +++|.+.+  +..+...-......+
T Consensus        70 ml~~L~l~~g~~VLeIG-s-GsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pf  146 (215)
T d1jg1a_          70 MLEIANLKPGMNILEVG-T-GSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPY  146 (215)
T ss_dssp             HHHHHTCCTTCCEEEEC-C-TTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHhhccCccceEEEec-C-CCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcc
Confidence            45677899999999999 3 5588888888875 77899999988755554    45674433  222211111223479


Q ss_pred             cEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          216 DVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       216 d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      |.|+-+.+.......+...++ ++|+++..
T Consensus       147 D~Iiv~~a~~~ip~~l~~qL~-~gGrLv~p  175 (215)
T d1jg1a_         147 DVIIVTAGAPKIPEPLIEQLK-IGGKLIIP  175 (215)
T ss_dssp             EEEEECSBBSSCCHHHHHTEE-EEEEEEEE
T ss_pred             eeEEeecccccCCHHHHHhcC-CCCEEEEE
Confidence            999988776666666777777 88998763

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.59  E-value=0.00016  Score=55.61  Aligned_cols=99  Identities=14%  Similarity=0.047  Sum_probs=68.0

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC--C--EEEcCCCccccccCCCccE
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA--D--LAIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~--~--~v~~~~~~~~~~~~~~~d~  217 (255)
                      .++...+++|++||-+| +| .|..++.+++.  +.+|+.++.+++..+.+++.-.  .  .++..+..........+|+
T Consensus        62 ml~~L~l~~g~~VLdIG-~G-sGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~  137 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIG-TG-IGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR  137 (224)
T ss_dssp             HHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHHhhhcccceEEEec-CC-CCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence            45677899999999999 44 58888888874  6899999999998888765311  1  2222221111111246999


Q ss_pred             EEECCCCccceeeeeeccccCCceEEEE
Q 025278          218 VFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       218 vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      |+-+.+.+.....+.+.++ ++|+++..
T Consensus       138 Iiv~~a~~~ip~~l~~qLk-~GGrLV~p  164 (224)
T d1vbfa_         138 VVVWATAPTLLCKPYEQLK-EGGIMILP  164 (224)
T ss_dssp             EEESSBBSSCCHHHHHTEE-EEEEEEEE
T ss_pred             HHhhcchhhhhHHHHHhcC-CCCEEEEE
Confidence            9977666665665667777 89998874

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=8.1e-05  Score=58.60  Aligned_cols=74  Identities=23%  Similarity=0.369  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE-E--cCCCcc-ccc-------cCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA-I--DYTKEN-IED-------LPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v-~--~~~~~~-~~~-------~~~~  214 (255)
                      .|++++|+||++++|.+.++.+.. .|++|+++++++++++.+    ++.|.+.. +  |-.+++ ..+       ..++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFAT-AGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999998887777 499999999998887654    34554332 2  222221 111       1247


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++++++|.
T Consensus        89 iDilvnnAG~   98 (255)
T d1fmca_          89 VDILVNNAGG   98 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEeeeCCcC
Confidence            9999999984

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=0.00015  Score=56.19  Aligned_cols=72  Identities=21%  Similarity=0.330  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE-cCCCc--cccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI-DYTKE--NIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~-~~~~~--~~~~~~~~~d~vid~~G~~  225 (255)
                      +|+++||+||++++|.+.++.+... |++|+++++++++++   +.+...+. |-.+.  ...+..+.+|++++++|..
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~-Ga~V~~~~r~~~~l~---~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~   77 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQE-GAEVTICARNEELLK---RSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGP   77 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHH---HTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHH---hcCCcEEEcchHHHHHHHHHHhCCCcEEEeccccc
Confidence            5799999999999999988888774 999999999886654   44543322 22211  1112245799999999843

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00044  Score=50.11  Aligned_cols=105  Identities=19%  Similarity=0.253  Sum_probs=71.5

Q ss_pred             HHHHH-Hh-cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCcc
Q 025278          139 AYEGL-ER-SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       139 a~~~l-~~-~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d  216 (255)
                      .+.++ +. ...-.|++|+|.| .|-+|...++.++.+ |++|++++.++-+.-.+.--|... .     ...+.....|
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~G-yG~iG~g~A~~~rg~-G~~V~v~e~dp~~al~A~~dG~~v-~-----~~~~a~~~ad   81 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQALRGF-GARVIITEIDPINALQAAMEGYEV-T-----TMDEACQEGN   81 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCEE-C-----CHHHHTTTCS
T ss_pred             HHHHHHHHhCceecCCEEEEec-cccccHHHHHHHHhC-CCeeEeeecccchhHHhhcCceEe-e-----ehhhhhhhcc
Confidence            44455 32 3456899999999 999999999999996 999999999987755555555432 1     2333445689


Q ss_pred             EEEECCCCcccee-eeeeccccCCceEEEEeeccCCC
Q 025278          217 VVFDAVGKMCISI-VYQKCDKFQEKSLINFGLFRQEV  252 (255)
Q Consensus       217 ~vid~~G~~~~~~-~~~~~~~~~~G~~v~~G~~~~~~  252 (255)
                      +++-++|...... .-++.++ .+-.+...|.+..+.
T Consensus        82 ivvtaTGn~~vI~~eh~~~MK-dgaIL~N~Ghfd~EI  117 (163)
T d1li4a1          82 IFVTTTGCIDIILGRHFEQMK-DDAIVCNIGHFDVEI  117 (163)
T ss_dssp             EEEECSSCSCSBCHHHHTTCC-TTEEEEECSSSTTSB
T ss_pred             EEEecCCCccchhHHHHHhcc-CCeEEEEecccccee
Confidence            9999999765322 2244443 344555567665543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.52  E-value=0.00013  Score=57.19  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCC--C-EEE--cCCCcc-ccc-------cCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGA--D-LAI--DYTKEN-IED-------LPEKF  215 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~--~-~v~--~~~~~~-~~~-------~~~~~  215 (255)
                      .|+++||+||++++|.+.++.+... |++|+++++++++++.+. +++.  . ..+  |-.+++ ..+       ..+++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   83 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEE-GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCc
Confidence            6899999999999999988777764 999999999998887663 4431  1 222  222221 111       12479


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++++++|.
T Consensus        84 DiLVnnAg~   92 (251)
T d1zk4a1          84 STLVNNAGI   92 (251)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEecccc
Confidence            999999984

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.52  E-value=0.00022  Score=56.06  Aligned_cols=73  Identities=21%  Similarity=0.294  Sum_probs=51.6

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE---EcCCCcc-cc-------ccCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA---IDYTKEN-IE-------DLPEKF  215 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v---~~~~~~~-~~-------~~~~~~  215 (255)
                      |+.+||+||++++|.+.+..+.. .|++|+++++++++++.+    ++.|.+..   .|-.+.+ ..       +..+++
T Consensus         2 gKValITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGK-EGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            67889999999999998887776 499999999998887654    34554332   2222221 11       113579


Q ss_pred             cEEEECCCC
Q 025278          216 DVVFDAVGK  224 (255)
Q Consensus       216 d~vid~~G~  224 (255)
                      |++|+++|.
T Consensus        81 DilVnnAG~   89 (257)
T d2rhca1          81 DVLVNNAGR   89 (257)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEecccc
Confidence            999999983

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00012  Score=57.51  Aligned_cols=74  Identities=20%  Similarity=0.251  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcC-----CCEE---EcCCCcc-ccc-------cC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLG-----ADLA---IDYTKEN-IED-------LP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g-----~~~v---~~~~~~~-~~~-------~~  212 (255)
                      .|+++||+||++++|.+.++.+... |++|+++++++++++.+. ++.     ....   .|-.+.+ ..+       ..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLK-GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            5899999999999999988888774 999999999998877653 331     1211   2332221 111       12


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++++++|.
T Consensus        81 G~iDilVnnAg~   92 (254)
T d2gdza1          81 GRLDILVNNAGV   92 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcCeecccccc
Confidence            479999999984

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.51  E-value=0.00015  Score=57.63  Aligned_cols=74  Identities=23%  Similarity=0.396  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCC----EE--EcCCCcc-ccc-------c
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGAD----LA--IDYTKEN-IED-------L  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~----~v--~~~~~~~-~~~-------~  211 (255)
                      .|++++|+||++++|.+.++.+... |++|+++++++++++.+.    +.|..    ..  .|-.+.+ ..+       .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5899999999999999988777774 999999999998877652    33321    12  2322221 111       1


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+.+|++++++|.
T Consensus        82 ~G~iDilVnnAG~   94 (274)
T d1xhla_          82 FGKIDILVNNAGA   94 (274)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCceEEEeeccc
Confidence            2479999999883

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.50  E-value=0.00014  Score=56.63  Aligned_cols=75  Identities=29%  Similarity=0.358  Sum_probs=54.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEE-E--cCCCcc-ccc-------cCCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLA-I--DYTKEN-IED-------LPEKFD  216 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v-~--~~~~~~-~~~-------~~~~~d  216 (255)
                      -.|+++||+||++++|.+.++-+.. .|++|+++.+++++++.+ ++++.+.. +  |-.+++ ..+       ..+.+|
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iD   81 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAR-EGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLH   81 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            3689999999999999998888877 499999999999988765 56775533 2  222211 111       124799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++|+++|.
T Consensus        82 iLinnAg~   89 (241)
T d2a4ka1          82 GVAHFAGV   89 (241)
T ss_dssp             EEEEGGGG
T ss_pred             Eecccccc
Confidence            99999873

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00016  Score=56.93  Aligned_cols=76  Identities=22%  Similarity=0.353  Sum_probs=53.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCC-CEE--E--cCCCcc-ccc-------c
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGA-DLA--I--DYTKEN-IED-------L  211 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~-~~v--~--~~~~~~-~~~-------~  211 (255)
                      -+|+++||+||++++|.+.+..+.+. |++|+++++++++++.+    ++.+. ..+  +  |-.+++ ..+       .
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQ-GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            46889999999999999988888774 99999999999887765    23332 122  2  322221 111       1


Q ss_pred             CCCccEEEECCCCc
Q 025278          212 PEKFDVVFDAVGKM  225 (255)
Q Consensus       212 ~~~~d~vid~~G~~  225 (255)
                      .+++|++|+++|..
T Consensus        87 ~g~iD~lVnnAg~~  100 (257)
T d1xg5a_          87 HSGVDICINNAGLA  100 (257)
T ss_dssp             HCCCSEEEECCCCC
T ss_pred             cCCCCEEEeccccc
Confidence            24799999999843

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.2e-05  Score=58.74  Aligned_cols=73  Identities=16%  Similarity=0.179  Sum_probs=53.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc---ccccCCCccEEEECCCCc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN---IEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~~d~vid~~G~~  225 (255)
                      .++|+|+||+|.+|...+..+... |.+|++++|+++|+......+... +..+-.+   +.+...++|+||.++|..
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~-g~~V~~~~R~~~~~~~~~~~~~~~-~~gD~~d~~~l~~al~~~d~vi~~~g~~   78 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSRLPSEGPRPAHV-VVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGGGSCSSSCCCSEE-EESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEEcChhhccccccccccc-ccccccchhhHHHHhcCCCEEEEEeccC
Confidence            478999999999999999877774 999999999998876544445543 3332222   223356899999999853

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.48  E-value=0.00018  Score=56.71  Aligned_cols=74  Identities=22%  Similarity=0.369  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCEE---EcCCCcc-ccc-------c-CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADLA---IDYTKEN-IED-------L-PE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~v---~~~~~~~-~~~-------~-~~  213 (255)
                      +|+++||+||++++|.+.+..+... |++|+++++++++++.+.    +.+....   .|..+.+ ..+       . .+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            6899999999999999988887774 999999999998876552    2333221   2333221 111       1 23


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++++++|.
T Consensus        86 ~idilvnnAG~   96 (259)
T d1xq1a_          86 KLDILINNLGA   96 (259)
T ss_dssp             CCSEEEEECCC
T ss_pred             Ccccccccccc
Confidence            58999999984

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00019  Score=52.72  Aligned_cols=77  Identities=21%  Similarity=0.326  Sum_probs=52.9

Q ss_pred             HHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcC---CCEEEcCCCccccccCCCc
Q 025278          141 EGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLG---ADLAIDYTKENIEDLPEKF  215 (255)
Q Consensus       141 ~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g---~~~v~~~~~~~~~~~~~~~  215 (255)
                      ++++..+ ..+|++|+|+| +|+.+.+++..+..+ +.++.++.|+.+|.+.+. .+.   ....+...  +  .....+
T Consensus         7 ~~l~~~~~~~~~k~vlIlG-aGGaarai~~al~~~-g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~--~--~~~~~~   80 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIG-AGGASRGVLLPLLSL-DCAVTITNRTVSRAEELAKLFAHTGSIQALSMD--E--LEGHEF   80 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHHTGGGSSEEECCSG--G--GTTCCC
T ss_pred             HHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHhccc-ceEEEeccchHHHHHHHHHHHhhcccccccccc--c--cccccc
Confidence            4454433 45789999999 899999988888885 888888899998877653 333   11222111  1  112468


Q ss_pred             cEEEECCC
Q 025278          216 DVVFDAVG  223 (255)
Q Consensus       216 d~vid~~G  223 (255)
                      |++|+|+.
T Consensus        81 dliIN~Tp   88 (170)
T d1nyta1          81 DLIINATS   88 (170)
T ss_dssp             SEEEECCS
T ss_pred             ceeecccc
Confidence            99999986

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00034  Score=53.81  Aligned_cols=97  Identities=12%  Similarity=0.034  Sum_probs=64.9

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCCC-------EEEcCCCccccccCC
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGAD-------LAIDYTKENIEDLPE  213 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~~-------~v~~~~~~~~~~~~~  213 (255)
                      ..+++|++||-+| + +.|..++.+|+..+ ..+|+.++.+++-.+.+++    .+..       .+...+.........
T Consensus        72 ~~l~~g~~VLdiG-~-GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~  149 (224)
T d1i1na_          72 DQLHEGAKALDVG-S-GSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEA  149 (224)
T ss_dssp             TTSCTTCEEEEET-C-TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGC
T ss_pred             hccCCCCeEEEec-C-CCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhh
Confidence            3789999999999 4 44888888888753 4689999999887766532    2211       112111111111124


Q ss_pred             CccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          214 KFDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       214 ~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                      .+|+|+-+...........+.++ ++|+++..
T Consensus       150 ~fD~I~~~~~~~~ip~~l~~~Lk-pGG~LV~p  180 (224)
T d1i1na_         150 PYDAIHVGAAAPVVPQALIDQLK-PGGRLILP  180 (224)
T ss_dssp             CEEEEEECSBBSSCCHHHHHTEE-EEEEEEEE
T ss_pred             hhhhhhhhcchhhcCHHHHhhcC-CCcEEEEE
Confidence            69999988776666666777777 89998873

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.46  E-value=0.00015  Score=57.09  Aligned_cols=74  Identities=19%  Similarity=0.287  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-----HHcCCCEE-E--cCCCcc-cc-------ccCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-----RSLGADLA-I--DYTKEN-IE-------DLPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-----~~~g~~~v-~--~~~~~~-~~-------~~~~  213 (255)
                      .|+++||+||++++|.+.++.+... |++|+++++++++++.+     ++.|.+.. +  |-.+++ ..       +..+
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAA-GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999988887774 99999999988776543     34564432 2  322221 11       1135


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|+++++.|.
T Consensus        87 ~iDilVnnAg~   97 (260)
T d1h5qa_          87 PISGLIANAGV   97 (260)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCcEecccccc
Confidence            79999999884

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.46  E-value=0.00018  Score=57.07  Aligned_cols=74  Identities=24%  Similarity=0.400  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCC----EE--EcCCCcc-ccc-------c
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGAD----LA--IDYTKEN-IED-------L  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~----~v--~~~~~~~-~~~-------~  211 (255)
                      .|+++||+||++++|.+.+..+... |++|+++++++++++.+.    +.+..    ..  .|-.+.+ ...       .
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~-Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            5899999999999999988777774 999999999998877653    23321    12  2322221 111       1


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+++|++|+++|.
T Consensus        83 ~g~iDilvnnAG~   95 (272)
T d1xkqa_          83 FGKIDVLVNNAGA   95 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCceEEEeCCcc
Confidence            2479999999884

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.45  E-value=0.00022  Score=55.91  Aligned_cols=74  Identities=19%  Similarity=0.347  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE-E--cCCCcc-cc-------ccCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA-I--DYTKEN-IE-------DLPEK  214 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v-~--~~~~~~-~~-------~~~~~  214 (255)
                      .++.+||+||++++|.+.+..+.. .|++|+++++++++++.+    ++.|.+.. +  |-.+++ ..       +..+.
T Consensus         9 enKvalITGas~GIG~a~a~~la~-~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAK-SVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTT-TSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999998887776 499999999999887654    34454322 2  222221 11       11358


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|++.|.
T Consensus        88 iDilvnnag~   97 (251)
T d2c07a1          88 VDILVNNAGI   97 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             ceeeeecccc
Confidence            9999999883

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00017  Score=57.19  Aligned_cols=73  Identities=22%  Similarity=0.355  Sum_probs=49.1

Q ss_pred             CCEE-EEEcCCchHHHHHHH-HHHHhcCCcEEEEecChhhHHHH----HHcCCC-EEE--cCCCcc-cc-------ccCC
Q 025278          151 GKSI-LVLGGAGGVGTMVIQ-LAKHVFGASKVAATSSTAKLDLL----RSLGAD-LAI--DYTKEN-IE-------DLPE  213 (255)
Q Consensus       151 g~~V-lI~ga~g~~G~~a~~-~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~-~v~--~~~~~~-~~-------~~~~  213 (255)
                      |++| ||+||++++|++.++ +++. +|++|++.++++++++.+    ++.|.. ..+  |-.+.+ ..       +..+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~-~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRL-FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHH-SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            6677 899999999998775 5555 589999999999987655    233422 222  222211 11       1124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|++|+++|-
T Consensus        81 ~iDiLVnNAGi   91 (275)
T d1wmaa1          81 GLDVLVNNAGI   91 (275)
T ss_dssp             SEEEEEECCCC
T ss_pred             CcEEEEEcCCc
Confidence            79999999983

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.41  E-value=0.00029  Score=55.41  Aligned_cols=73  Identities=22%  Similarity=0.352  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----Hc--CCCEE-E--cCCCcc-ccc-------cC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SL--GADLA-I--DYTKEN-IED-------LP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~--g~~~v-~--~~~~~~-~~~-------~~  212 (255)
                      .|++++|+||++++|.+.++.+... |++|+++++++++++.+.    +.  +.... +  |-.+++ ...       ..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999988877774 999999999998876542    22  22222 2  333322 111       12


Q ss_pred             CCccEEEECCC
Q 025278          213 EKFDVVFDAVG  223 (255)
Q Consensus       213 ~~~d~vid~~G  223 (255)
                      +++|++++++|
T Consensus        82 G~iDiLVnnAG   92 (258)
T d1iy8a_          82 GRIDGFFNNAG   92 (258)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            47999999988

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00028  Score=56.70  Aligned_cols=43  Identities=26%  Similarity=0.457  Sum_probs=37.3

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      -.|+++||+||++++|.+.++.+... |++|+++++++++++.+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~-Ga~Vvi~~r~~~~l~~~   52 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLEL-GSNVVIASRKLERLKSA   52 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH
Confidence            47899999999999999988777774 99999999999887654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.40  E-value=0.00025  Score=55.92  Aligned_cols=74  Identities=22%  Similarity=0.372  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCC----EEE--cCCCcc-ccc-------c
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGAD----LAI--DYTKEN-IED-------L  211 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~----~v~--~~~~~~-~~~-------~  211 (255)
                      .|+++||+||++++|.+.++.+... |++|+++++++++++.+.    +.+..    ..+  |-.+.+ ..+       .
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFARE-GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            6889999999999999988777764 999999999998876652    23311    122  322221 111       1


Q ss_pred             CCCccEEEECCCC
Q 025278          212 PEKFDVVFDAVGK  224 (255)
Q Consensus       212 ~~~~d~vid~~G~  224 (255)
                      .+++|++++++|.
T Consensus        83 ~g~iDilvnnAG~   95 (264)
T d1spxa_          83 FGKLDILVNNAGA   95 (264)
T ss_dssp             HSCCCEEEECCC-
T ss_pred             hCCCCEeeccccc
Confidence            2479999999884

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.37  E-value=0.00039  Score=54.41  Aligned_cols=74  Identities=20%  Similarity=0.223  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCc--hHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCEEEcCCCccccc----------cCC
Q 025278          150 AGKSILVLGGAG--GVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADLAIDYTKENIED----------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g--~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~----------~~~  213 (255)
                      .|+++||+||+|  ++|.+.++.+... |++|++.+++++..+.++    ..+....+..+-.+..+          ..+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~-Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEA-GAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHC-CCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcC
Confidence            689999999877  8999888777664 999998888876555442    33433444333222111          124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|+++++.|.
T Consensus        86 ~iDilVnnag~   96 (256)
T d1ulua_          86 GLDYLVHAIAF   96 (256)
T ss_dssp             SEEEEEECCCC
T ss_pred             CceEEEecccc
Confidence            79999999874

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.35  E-value=0.00031  Score=54.79  Aligned_cols=74  Identities=23%  Similarity=0.356  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH--HHHHHcCCCEE-E--cCCCcc-ccc-------cCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL--DLLRSLGADLA-I--DYTKEN-IED-------LPEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~--~~~~~~g~~~v-~--~~~~~~-~~~-------~~~~~d  216 (255)
                      .|++++|+||++++|.+.++.+.. .|++|++.++++++.  +.+++.|.... +  |-.+.+ ...       ..+++|
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~-~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAV-EGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            579999999999999998888777 499999999866433  33466775432 2  222221 111       124799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++++++|.
T Consensus        83 ilVnnAG~   90 (247)
T d2ew8a1          83 ILVNNAGI   90 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.35  E-value=0.00018  Score=56.49  Aligned_cols=74  Identities=14%  Similarity=0.160  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCEE----EcCC-Cc-ccccc-------C
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADLA----IDYT-KE-NIEDL-------P  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~v----~~~~-~~-~~~~~-------~  212 (255)
                      .|++|||+||++++|...+..+.. .|++++++.++.++.+.+++    .+-..+    .|.. +. ...+.       .
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~-~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVK-RNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHH-CCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            589999999999999997777776 49999999876665544432    222121    2222 11 11111       2


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +.+|++++++|.
T Consensus        83 g~iDilvnnAG~   94 (254)
T d1sbya1          83 KTVDILINGAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEeCCCC
Confidence            479999999994

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.35  E-value=0.00043  Score=54.22  Aligned_cols=72  Identities=21%  Similarity=0.308  Sum_probs=50.0

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEE-E--cCCCcc-cc-------ccCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLA-I--DYTKEN-IE-------DLPEKFD  216 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v-~--~~~~~~-~~-------~~~~~~d  216 (255)
                      +.+||+||++++|.+.+..+... |++|++.++++++++.+    ++.|.+.. +  |-.+++ ..       +..+++|
T Consensus         2 KValITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKD-GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            35699999999999988777764 99999999999887654    34554332 2  322221 11       1135799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++++++|.
T Consensus        81 ilVnnAG~   88 (255)
T d1gega_          81 VIVNNAGV   88 (255)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999983

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.35  E-value=0.00058  Score=49.51  Aligned_cols=77  Identities=26%  Similarity=0.358  Sum_probs=55.6

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHH-HHHHcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLD-LLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      .--.+.+|+|+| +|.+|.+.++.+... |. ++.++.|+.+|.+ +++++|.. ++++.  ++.+....+|+||.|+++
T Consensus        20 ~~l~~~~ilviG-aG~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~~--~~~~~l~~~Divi~atss   94 (159)
T d1gpja2          20 GSLHDKTVLVVG-AGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDLGGE-AVRFD--ELVDHLARSDVVVSATAA   94 (159)
T ss_dssp             SCCTTCEEEEES-CCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHHTCE-ECCGG--GHHHHHHTCSEEEECCSS
T ss_pred             CCcccCeEEEEC-CCHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHHhhhcc-cccch--hHHHHhccCCEEEEecCC
Confidence            335778999999 799999999988885 76 5777788877765 55788854 33322  233334589999999997


Q ss_pred             ccce
Q 025278          225 MCIS  228 (255)
Q Consensus       225 ~~~~  228 (255)
                      +...
T Consensus        95 ~~~i   98 (159)
T d1gpja2          95 PHPV   98 (159)
T ss_dssp             SSCC
T ss_pred             CCcc
Confidence            6533

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.32  E-value=0.00026  Score=55.81  Aligned_cols=74  Identities=22%  Similarity=0.344  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-hHHH----HHHcCCCEE-E--cCCCcc-ccc-------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-KLDL----LRSLGADLA-I--DYTKEN-IED-------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-~~~~----~~~~g~~~v-~--~~~~~~-~~~-------~~~  213 (255)
                      .|++++|+||++++|.+.++.+... |++|++.+++.+ +.+.    +++.|.+.. +  |-.+++ ..+       ..+
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATE-KAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6899999999999999988777764 999999998754 3332    345564322 2  322221 111       124


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      ++|++++++|.
T Consensus        85 ~iDiLVnnAG~   95 (261)
T d1geea_          85 KLDVMINNAGL   95 (261)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEeecccee
Confidence            79999999984

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.23  E-value=0.00096  Score=48.06  Aligned_cols=96  Identities=19%  Similarity=0.219  Sum_probs=68.7

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      .+-.|++++|.| -|-+|.-.++-+|.+ |++|++++.++-+.-.+.--|.. +.     ...+..+..|+++-++|...
T Consensus        19 ~~laGk~vvV~G-YG~vGrG~A~~~rg~-Ga~V~V~E~DPi~alqA~mdGf~-v~-----~~~~a~~~aDi~vTaTGn~~   90 (163)
T d1v8ba1          19 FLISGKIVVICG-YGDVGKGCASSMKGL-GARVYITEIDPICAIQAVMEGFN-VV-----TLDEIVDKGDFFITCTGNVD   90 (163)
T ss_dssp             CCCTTSEEEEEC-CSHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHHTTTCE-EC-----CHHHHTTTCSEEEECCSSSS
T ss_pred             ceecCCEEEEec-ccccchhHHHHHHhC-CCEEEEEecCchhhHHHHhcCCc-cC-----chhHccccCcEEEEcCCCCc
Confidence            457899999999 999999999999996 99999999999665444434443 22     22344567899999999876


Q ss_pred             ce-eeeeeccccCCceEEEEeeccCC
Q 025278          227 IS-IVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       227 ~~-~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      .. ..-...++ .+..+...|-+..+
T Consensus        91 vI~~~h~~~MK-dgaIl~N~GHfd~E  115 (163)
T d1v8ba1          91 VIKLEHLLKMK-NNAVVGNIGHFDDE  115 (163)
T ss_dssp             SBCHHHHTTCC-TTCEEEECSSTTTS
T ss_pred             cccHHHHHHhh-CCeEEEeccccchh
Confidence            32 22244454 45667777766544

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.21  E-value=0.00042  Score=54.38  Aligned_cols=77  Identities=26%  Similarity=0.253  Sum_probs=51.1

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHH----HHHcCCCEE-EcCCCccccc----------c
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDL----LRSLGADLA-IDYTKENIED----------L  211 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~----~~~~g~~~v-~~~~~~~~~~----------~  211 (255)
                      .-.|+++||+||++++|.+.++.+... |++|++..+ ++++.+.    +++.|.+.. +..+-.+..+          .
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~-G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRR-GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999988777774 999998754 4444443    345665432 3222222111          1


Q ss_pred             CCCccEEEECCCCc
Q 025278          212 PEKFDVVFDAVGKM  225 (255)
Q Consensus       212 ~~~~d~vid~~G~~  225 (255)
                      .+++|++|++.|..
T Consensus        82 ~g~idilinnag~~   95 (259)
T d1ja9a_          82 FGGLDFVMSNSGME   95 (259)
T ss_dssp             HSCEEEEECCCCCC
T ss_pred             cCCCcEEEeccccc
Confidence            24799999999943

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.20  E-value=0.00063  Score=54.67  Aligned_cols=74  Identities=26%  Similarity=0.367  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh---------hhHHHH----HHcCCCEEEcCCCccc-cc-----
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST---------AKLDLL----RSLGADLAIDYTKENI-ED-----  210 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~---------~~~~~~----~~~g~~~v~~~~~~~~-~~-----  210 (255)
                      .|+++||+||++++|.+.++.+.. .|++|++.+++.         ++++.+    ...+.....+..+.+. ++     
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~-~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAE-RGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence            589999999999999998887777 499999987543         223222    2334444555544321 11     


Q ss_pred             --cCCCccEEEECCCC
Q 025278          211 --LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 --~~~~~d~vid~~G~  224 (255)
                        ..+++|++|+++|.
T Consensus        85 ~~~~G~iDiLVnNAGi  100 (302)
T d1gz6a_          85 LDTFGRIDVVVNNAGI  100 (302)
T ss_dssp             HHHTSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCcc
Confidence              13579999999983

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.20  E-value=0.0005  Score=53.99  Aligned_cols=74  Identities=20%  Similarity=0.338  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh-hhHHHH-----HHcCCCEEE---cCCCcc-ccc-------cC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST-AKLDLL-----RSLGADLAI---DYTKEN-IED-------LP  212 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~-~~~~~~-----~~~g~~~v~---~~~~~~-~~~-------~~  212 (255)
                      +|+++||+||++++|.+.++.+.. .|++|++.++++ ++++.+     ++.|.....   |-.+.+ ..+       ..
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~-~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAA-QGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            689999999999999998877766 499999999864 444433     234544332   222211 111       12


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      +++|++|+++|.
T Consensus        82 G~iDiLVnnAG~   93 (260)
T d1x1ta1          82 GRIDILVNNAGI   93 (260)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCcEEEeeccc
Confidence            479999999983

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.20  E-value=0.00038  Score=54.30  Aligned_cols=73  Identities=16%  Similarity=0.298  Sum_probs=49.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCC--cEEEEecChhhHHHHHHcC-CC-EEE--cCCCcc-ccc----c-----CCC
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGA--SKVAATSSTAKLDLLRSLG-AD-LAI--DYTKEN-IED----L-----PEK  214 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~--~vi~~~~~~~~~~~~~~~g-~~-~v~--~~~~~~-~~~----~-----~~~  214 (255)
                      .++|||+||++++|.+.++.+... |+  +|+...|+.++++.+++.. .. +++  |..+.+ ..+    .     ..+
T Consensus         3 ~KtilITGassGIG~a~a~~la~~-G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~   81 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKD-KNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTC-TTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-CCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCC
Confidence            489999999999999988766653 64  6888899999988877643 22 222  322221 111    0     125


Q ss_pred             ccEEEECCCC
Q 025278          215 FDVVFDAVGK  224 (255)
Q Consensus       215 ~d~vid~~G~  224 (255)
                      +|++|+++|.
T Consensus        82 idilinnAG~   91 (250)
T d1yo6a1          82 LSLLINNAGV   91 (250)
T ss_dssp             CCEEEECCCC
T ss_pred             eEEEEEcCcc
Confidence            8999999994

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.17  E-value=0.0005  Score=54.33  Aligned_cols=75  Identities=24%  Similarity=0.333  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC-hhhHHH----HHHcCCCEEEc-CCCccccc----------cCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS-TAKLDL----LRSLGADLAID-YTKENIED----------LPE  213 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~-~~~~~~----~~~~g~~~v~~-~~~~~~~~----------~~~  213 (255)
                      .|+++||+||++++|.+.++.+... |++|++.+++ +++++.    +++.|.+.... .+-.+..+          ..+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999988888774 9999998875 444333    34556544322 22222111          124


Q ss_pred             CccEEEECCCCc
Q 025278          214 KFDVVFDAVGKM  225 (255)
Q Consensus       214 ~~d~vid~~G~~  225 (255)
                      ++|+++++.|..
T Consensus        96 ~idilV~nag~~  107 (272)
T d1g0oa_          96 KLDIVCSNSGVV  107 (272)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCccccccccc
Confidence            789999998843

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.15  E-value=0.00025  Score=55.50  Aligned_cols=100  Identities=14%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cC-CCEEEcCCCcccccc--CCC
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LG-ADLAIDYTKENIEDL--PEK  214 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~--~~~  214 (255)
                      +.+..++||++||=.| +|. |.++..+|+.++ ..+|+.++.+++..+.+++    ++ .+.+ +....++.+.  ...
T Consensus        78 i~~l~i~pG~rVLEiG-~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv-~~~~~Di~~~~~~~~  154 (250)
T d1yb2a1          78 IMRCGLRPGMDILEVG-VGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV-RTSRSDIADFISDQM  154 (250)
T ss_dssp             ---CCCCTTCEEEEEC-CTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTE-EEECSCTTTCCCSCC
T ss_pred             HHHcCCCCcCEEEEee-eeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCce-EEEEeeeecccccce
Confidence            4678899999999988 444 777788888753 4689999999998888854    22 2211 1111122221  246


Q ss_pred             ccEEEECCCC-ccceeeeeeccccCCceEEEEe
Q 025278          215 FDVVFDAVGK-MCISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       215 ~d~vid~~G~-~~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      +|.||--... ......+.+.++ ++|+++++.
T Consensus       155 fD~V~ld~p~p~~~l~~~~~~LK-pGG~lv~~~  186 (250)
T d1yb2a1         155 YDAVIADIPDPWNHVQKIASMMK-PGSVATFYL  186 (250)
T ss_dssp             EEEEEECCSCGGGSHHHHHHTEE-EEEEEEEEE
T ss_pred             eeeeeecCCchHHHHHHHHHhcC-CCceEEEEe
Confidence            8998854443 344455577777 899998864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.12  E-value=0.00064  Score=52.16  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhc--C----CcEEEEecChhhHHHHHH---------cCCC--EEEcCCCccc
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVF--G----ASKVAATSSTAKLDLLRS---------LGAD--LAIDYTKENI  208 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~--g----~~vi~~~~~~~~~~~~~~---------~g~~--~v~~~~~~~~  208 (255)
                      ..+++|++||.+| + +.|..++.+++..+  |    .+|+.++.+++-.+.+++         ++..  .++..+....
T Consensus        76 ~~l~~g~~VLeIG-t-GsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~  153 (223)
T d1r18a_          76 DHLKPGARILDVG-S-GSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG  153 (223)
T ss_dssp             TTCCTTCEEEEES-C-TTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC
T ss_pred             hccCCCCeEEEec-C-CCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccc
Confidence            3789999999999 3 44777777776542  2    479999998876665532         1211  1222222111


Q ss_pred             cccCCCccEEEECCCCccceeeeeeccccCCceEEE-Ee
Q 025278          209 EDLPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLIN-FG  246 (255)
Q Consensus       209 ~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~-~G  246 (255)
                      ......+|.|+-+.+.+.........++ ++|+++. +|
T Consensus       154 ~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk-~gG~lV~pvg  191 (223)
T d1r18a_         154 YPPNAPYNAIHVGAAAPDTPTELINQLA-SGGRLIVPVG  191 (223)
T ss_dssp             CGGGCSEEEEEECSCBSSCCHHHHHTEE-EEEEEEEEES
T ss_pred             cccccceeeEEEEeechhchHHHHHhcC-CCcEEEEEEe
Confidence            1123479999988777666666677777 8999977 44

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.0011  Score=52.17  Aligned_cols=102  Identities=18%  Similarity=0.056  Sum_probs=68.9

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCCC--EEEcCCCccccccCCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~  214 (255)
                      .+...++++|++||=.| +|. |.++..+|+.++ +.+++.++.+++..+.+++    +|..  ..+...+.........
T Consensus        95 Ii~~l~i~pG~~VLDiG-~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~  172 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTG-VGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD  172 (266)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred             HHHhhCCCCCCEEEECC-CCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccc
Confidence            45788999999999988 554 788888888753 5799999999998888743    4532  2222222111111246


Q ss_pred             ccEEEECCCCc-cceeeeeeccccCCceEEEEe
Q 025278          215 FDVVFDAVGKM-CISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       215 ~d~vid~~G~~-~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      +|.||--...+ .....+.+.++ ++|+++.+-
T Consensus       173 ~D~V~~d~p~p~~~l~~~~~~LK-pGG~lv~~~  204 (266)
T d1o54a_         173 VDALFLDVPDPWNYIDKCWEALK-GGGRFATVC  204 (266)
T ss_dssp             EEEEEECCSCGGGTHHHHHHHEE-EEEEEEEEE
T ss_pred             eeeeEecCCCHHHHHHHHHhhcC-CCCEEEEEe
Confidence            88888666644 44455677777 899998764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.08  E-value=0.00049  Score=53.19  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK  188 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~  188 (255)
                      .|++|||+||++++|.+.++.+.. .|++|+.+++++++
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~-~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRA-RNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHT-TTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCccc
Confidence            489999999999999999998888 49999999876543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.04  E-value=0.00029  Score=51.85  Aligned_cols=70  Identities=21%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcC---CCEEEcCCCccccccCCCccEEEECCC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLG---ADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g---~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      ..++++|+|+| +|+.+.+++..+.. ++.+++++.|+.+|.+.+. .++   ....+..+.    .....+|++|+|+.
T Consensus        15 ~~~~k~vlIlG-aGGaarai~~aL~~-~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~----~~~~~~diiIN~tp   88 (171)
T d1p77a1          15 LRPNQHVLILG-AGGATKGVLLPLLQ-AQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDS----IPLQTYDLVINATS   88 (171)
T ss_dssp             CCTTCEEEEEC-CSHHHHTTHHHHHH-TTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG----CCCSCCSEEEECCC
T ss_pred             CCCCCEEEEEC-CcHHHHHHHHHHcc-cCceeeeccchHHHHHHHHHHHhhccccchhhhcc----ccccccceeeeccc
Confidence            45788999999 89999998888876 5888999999998877653 343   112222111    11357899999987

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.00  E-value=0.00073  Score=52.56  Aligned_cols=73  Identities=16%  Similarity=0.236  Sum_probs=47.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHH--hcCCcEEEEecChhhHHHHHH---cCCC-EE--EcCCCcc-ccc---------cCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKH--VFGASKVAATSSTAKLDLLRS---LGAD-LA--IDYTKEN-IED---------LPE  213 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~--~~g~~vi~~~~~~~~~~~~~~---~g~~-~v--~~~~~~~-~~~---------~~~  213 (255)
                      ++|||+||++++|.+.++.+..  ..|++|++..+++++++.+++   .+.. .+  .|..+.+ ..+         ...
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            5899999999999998765432  248899999999988766543   2222 22  2333322 111         123


Q ss_pred             CccEEEECCCC
Q 025278          214 KFDVVFDAVGK  224 (255)
Q Consensus       214 ~~d~vid~~G~  224 (255)
                      .+|+++++.|.
T Consensus        83 ~iDiLvnNAg~   93 (248)
T d1snya_          83 GLNVLFNNAGI   93 (248)
T ss_dssp             CCSEEEECCCC
T ss_pred             CcceEEeeccc
Confidence            68999999883

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00062  Score=52.91  Aligned_cols=48  Identities=25%  Similarity=0.343  Sum_probs=40.5

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGAD  198 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~  198 (255)
                      +|+++||+||++++|.+.++.+... |++|+++++++++++.+ ++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQ-GASAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCC
Confidence            6899999999999999988888774 99999999998887765 566643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.96  E-value=0.00043  Score=55.04  Aligned_cols=99  Identities=15%  Similarity=0.190  Sum_probs=64.6

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCEEEcCCCccccccCCCccEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADLAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~d~v  218 (255)
                      +++.++++|++||=+| +|. |.++..+++. .|++|+.++.+++..+.+++    .|....+.....+..+..+.+|.|
T Consensus        45 ~~~l~l~~g~~VLDiG-CG~-G~~a~~~a~~-~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i  121 (280)
T d2fk8a1          45 LDKLDLKPGMTLLDIG-CGW-GTTMRRAVER-FDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRI  121 (280)
T ss_dssp             HTTSCCCTTCEEEEES-CTT-SHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEE
T ss_pred             HHHcCCCCCCEEEEec-CCc-hHHHHHHHHh-CceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhh
Confidence            4678899999999999 553 5566778887 49999999999998877754    342211111112333445678888


Q ss_pred             EE-----CCCCc---cceeeeeeccccCCceEEEE
Q 025278          219 FD-----AVGKM---CISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       219 id-----~~G~~---~~~~~~~~~~~~~~G~~v~~  245 (255)
                      +-     ..+..   .....+.+.++ ++|++++=
T Consensus       122 ~si~~~eh~~~~~~~~~f~~i~~~Lk-pgG~~~i~  155 (280)
T d2fk8a1         122 VSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQ  155 (280)
T ss_dssp             EEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEE
T ss_pred             hHhhHHHHhhhhhHHHHHHHHHhccC-CCceEEEE
Confidence            63     34422   22344566677 89998763

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.95  E-value=0.00031  Score=54.47  Aligned_cols=70  Identities=20%  Similarity=0.328  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcc-ccc-------cCCCccEEEEC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKEN-IED-------LPEKFDVVFDA  221 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~-------~~~~~d~vid~  221 (255)
                      .|+++||+||++++|.+.++.+... |++|+++++++++.+.+..    ...|..+.+ ..+       ..+++|+++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~----~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAAD-GHKVAVTHRGSGAPKGLFG----VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSSCCCTTSEE----EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCcchhcCceE----EEEecCCHHHHHHHHHHHHHhcCCceEEEee
Confidence            6899999999999999988888774 9999999998766542211    123333222 111       12479999999


Q ss_pred             CCC
Q 025278          222 VGK  224 (255)
Q Consensus       222 ~G~  224 (255)
                      +|.
T Consensus        81 AG~   83 (237)
T d1uzma1          81 AGL   83 (237)
T ss_dssp             CSC
T ss_pred             ecc
Confidence            883

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.91  E-value=0.0018  Score=47.39  Aligned_cols=77  Identities=21%  Similarity=0.188  Sum_probs=55.4

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCC----------ccccccCCCccEEEEC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTK----------ENIEDLPEKFDVVFDA  221 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~----------~~~~~~~~~~d~vid~  221 (255)
                      +++.|+| +|.+|++.+..+... |.+|.++++++++.+.+++.+.........          .+..+..+..|++|-+
T Consensus         2 k~iaIiG-aG~~G~~~A~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           2 KTYAVLG-LGNGGHAFAAYLALK-GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CEEEEEC-ccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            6899999 899999998888884 999999999999999888766432211111          1122224578999999


Q ss_pred             CCCccceee
Q 025278          222 VGKMCISIV  230 (255)
Q Consensus       222 ~G~~~~~~~  230 (255)
                      +........
T Consensus        80 v~~~~~~~~   88 (184)
T d1bg6a2          80 VPAIHHASI   88 (184)
T ss_dssp             SCGGGHHHH
T ss_pred             EchhHHHHH
Confidence            886654333

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.90  E-value=0.00083  Score=53.63  Aligned_cols=100  Identities=11%  Similarity=0.188  Sum_probs=65.5

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCCEEEcCCCccccccCCCccEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGADLAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~~~d~v  218 (255)
                      +++.++++|++||=+| +| .|.++..+|+. .|++|+.++.+++..+.+    ++.|....+.....+.....+.+|.|
T Consensus        54 ~~~l~l~~G~~VLDiG-CG-~G~~~~~~a~~-~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i  130 (291)
T d1kpia_          54 LDKLNLEPGMTLLDIG-CG-WGSTMRHAVAE-YDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRI  130 (291)
T ss_dssp             HHTTCCCTTCEEEEET-CT-TSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEE
T ss_pred             HHhcCCCCCCEEEEec-Cc-chHHHHHHHHh-cCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceE
Confidence            4788999999999999 54 46677888888 499999999999876665    34553322221122233334579988


Q ss_pred             EE-----CCCCc----------cceeeeeeccccCCceEEEEe
Q 025278          219 FD-----AVGKM----------CISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       219 id-----~~G~~----------~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      +.     ..+..          .....+.+.++ ++|++++-.
T Consensus       131 ~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lk-pgG~~~l~~  172 (291)
T d1kpia_         131 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHT  172 (291)
T ss_dssp             EEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSC-TTCEEEEEE
T ss_pred             eechhHHhcchhhhhhHHHHHHHHHHHHHHhCC-CCCceEEEE
Confidence            73     23321          22333567777 899988643

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.89  E-value=0.0018  Score=50.80  Aligned_cols=76  Identities=17%  Similarity=0.121  Sum_probs=49.7

Q ss_pred             CCCCEEEEEcCCc--hHHHHHHHHHHHhcCCcEEEEecChhhHHHH---HHcC-CCEEE--cCCCcc-c-------cccC
Q 025278          149 SAGKSILVLGGAG--GVGTMVIQLAKHVFGASKVAATSSTAKLDLL---RSLG-ADLAI--DYTKEN-I-------EDLP  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g--~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~---~~~g-~~~v~--~~~~~~-~-------~~~~  212 (255)
                      -+|+++||+||+|  ++|.+.++.+.. .|++|++++++++..+.+   .+.+ ...++  +..++. .       .+..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~-~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFN-QGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL   81 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHT-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence            3689999999876  799998888877 499999999987543333   2222 22222  222211 1       1113


Q ss_pred             CCccEEEECCCCc
Q 025278          213 EKFDVVFDAVGKM  225 (255)
Q Consensus       213 ~~~d~vid~~G~~  225 (255)
                      +.+|+++.+.|..
T Consensus        82 g~id~lV~nag~~   94 (274)
T d2pd4a1          82 GSLDFIVHSVAFA   94 (274)
T ss_dssp             SCEEEEEECCCCC
T ss_pred             CCCCeEEeecccc
Confidence            5799999998843

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.87  E-value=0.00084  Score=53.45  Aligned_cols=100  Identities=13%  Similarity=0.189  Sum_probs=66.0

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCEEEcCCCccccccCCCccEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADLAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~d~v  218 (255)
                      +++.++++|++||=+| + |.|.++..+|+. .|++|+.++.+++..+.+++    .|-..-+.....++.+..+.+|.|
T Consensus        55 ~~~l~l~~G~~VLDiG-C-G~G~~a~~~a~~-~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i  131 (285)
T d1kpga_          55 LGKLGLQPGMTLLDVG-C-GWGATMMRAVEK-YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRI  131 (285)
T ss_dssp             HTTTTCCTTCEEEEET-C-TTSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEE
T ss_pred             HHHcCCCCCCEEEEec-C-cchHHHHHHHhc-CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccce
Confidence            4678999999999999 4 458888899998 49999999999998887744    331111111112333444578887


Q ss_pred             EE-----CCCCc---cceeeeeeccccCCceEEEEe
Q 025278          219 FD-----AVGKM---CISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       219 id-----~~G~~---~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      +-     ..|..   .....+.+.++ ++|++++--
T Consensus       132 ~si~~~eh~~~~~~~~~~~~~~r~Lk-pgG~~~l~~  166 (285)
T d1kpga_         132 VSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHT  166 (285)
T ss_dssp             EEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred             eeehhhhhcCchhHHHHHHHHHhhcC-CCCcEEEEE
Confidence            63     34332   22333456677 899988643

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.86  E-value=0.0015  Score=44.20  Aligned_cols=91  Identities=12%  Similarity=0.073  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh--hhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST--AKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      .|++|+|.| .|.+|..-++.+... |+++++++...  +-.+++++-+.. .... ... .+...++++|+-+++....
T Consensus        11 ~~k~vlVvG-~G~va~~ka~~ll~~-ga~v~v~~~~~~~~~~~~~~~~~i~-~~~~-~~~-~~dl~~~~lv~~at~d~~~   85 (113)
T d1pjqa1          11 RDRDCLIVG-GGDVAERKARLLLEA-GARLTVNALTFIPQFTVWANEGMLT-LVEG-PFD-ETLLDSCWLAIAATDDDTV   85 (113)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHT-TBEEEEEESSCCHHHHHHHTTTSCE-EEES-SCC-GGGGTTCSEEEECCSCHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEeccCChHHHHHHhcCCce-eecc-CCC-HHHhCCCcEEeecCCCHHH
Confidence            578999999 899999999998885 99999887533  333333332232 2221 111 1123588999999998776


Q ss_pred             eeeeeeccccCCceEEEEe
Q 025278          228 SIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       228 ~~~~~~~~~~~~G~~v~~G  246 (255)
                      .....+..+ ..|.++.+-
T Consensus        86 n~~i~~~a~-~~~ilVNv~  103 (113)
T d1pjqa1          86 NQRVSDAAE-SRRIFCNVV  103 (113)
T ss_dssp             HHHHHHHHH-HTTCEEEET
T ss_pred             HHHHHHHHH-HcCCEEEeC
Confidence            655555565 568887754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.002  Score=50.09  Aligned_cols=75  Identities=23%  Similarity=0.262  Sum_probs=49.8

Q ss_pred             CCCCEEEEEcCCc--hHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCEEEcCCCcccc----------ccC
Q 025278          149 SAGKSILVLGGAG--GVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADLAIDYTKENIE----------DLP  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g--~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~----------~~~  212 (255)
                      -.|+++||+||+|  ++|.+.+..+.. .|++|++..++++..+.++    ..+....+..+..+..          +..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~-~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHR-EGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHH-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence            4689999999888  788877776666 4999999999877665543    3443333332222211          113


Q ss_pred             CCccEEEECCCC
Q 025278          213 EKFDVVFDAVGK  224 (255)
Q Consensus       213 ~~~d~vid~~G~  224 (255)
                      ...|+.+++.+.
T Consensus        82 ~~~d~~v~~a~~   93 (258)
T d1qsga_          82 PKFDGFVHSIGF   93 (258)
T ss_dssp             SSEEEEEECCCC
T ss_pred             cccceEEEeecc
Confidence            478999998763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.85  E-value=0.0034  Score=43.59  Aligned_cols=73  Identities=21%  Similarity=0.205  Sum_probs=54.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCcc---cccc-CCCccEEEECCCCcc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKEN---IEDL-PEKFDVVFDAVGKMC  226 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~---~~~~-~~~~d~vid~~G~~~  226 (255)
                      .+|+|.| .|.+|...++.+... |..+++++.++++.+.++ +++.. ++..+..+   +.+. .+.+|.++-+++...
T Consensus         1 M~IvI~G-~G~~G~~la~~L~~~-g~~v~vid~d~~~~~~~~~~~~~~-vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~   77 (132)
T d1lssa_           1 MYIIIAG-IGRVGYTLAKSLSEK-GHDIVLIDIDKDICKKASAEIDAL-VINGDCTKIKTLEDAGIEDADMYIAVTGKEE   77 (132)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCSSE-EEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCCcceecCChhhhhhhhhhhhhh-hccCcccchhhhhhcChhhhhhhcccCCcHH
Confidence            3689999 799999999998884 999999999999998876 45654 44433322   2222 357899999888664


Q ss_pred             c
Q 025278          227 I  227 (255)
Q Consensus       227 ~  227 (255)
                      .
T Consensus        78 ~   78 (132)
T d1lssa_          78 V   78 (132)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.83  E-value=0.0031  Score=49.04  Aligned_cols=78  Identities=26%  Similarity=0.437  Sum_probs=48.7

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCc-EEEEecChhh---H----HHHHHcCCCEEE---cCCCcc-c----c
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGAS-KVAATSSTAK---L----DLLRSLGADLAI---DYTKEN-I----E  209 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~-vi~~~~~~~~---~----~~~~~~g~~~v~---~~~~~~-~----~  209 (255)
                      ..++|+.++||+||++++|++.+..+... |++ ++++.|+..+   .    +.+++.|....+   |-.+.. .    .
T Consensus         4 ~~~~p~gt~lVTGgs~GIG~a~a~~la~~-Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~   82 (259)
T d2fr1a1           4 DEWKPTGTVLVTGGTGGVGGQIARWLARR-GAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLG   82 (259)
T ss_dssp             CCCCCCSEEEEETTTSHHHHHHHHHHHHH-TCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             cccCCcCEEEEECCCcHHHHHHHHHHHHC-CCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhc
Confidence            35789999999999999999988777664 775 6666665322   2    223456654322   222211 1    1


Q ss_pred             cc--CCCccEEEECCCC
Q 025278          210 DL--PEKFDVVFDAVGK  224 (255)
Q Consensus       210 ~~--~~~~d~vid~~G~  224 (255)
                      ..  ...+|.+|.+.|.
T Consensus        83 ~i~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          83 GIGDDVPLSAVFHAAAT   99 (259)
T ss_dssp             TSCTTSCEEEEEECCCC
T ss_pred             ccccccccccccccccc
Confidence            11  1368999999883

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.83  E-value=0.0037  Score=45.12  Aligned_cols=64  Identities=16%  Similarity=0.122  Sum_probs=48.5

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC-CEEEcCCCccccccCCCccEEEECCC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA-DLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      +|.|+| +|.+|...+..++. .|.+|++.++++++.+.+++.|. +...+..     +..+..|+||-|+-
T Consensus         2 kI~iIG-~G~mG~~lA~~l~~-~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~DiIilavp   66 (165)
T d2f1ka2           2 KIGVVG-LGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVERQLVDEAGQDL-----SLLQTAKIIFLCTP   66 (165)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTSCSEEESCG-----GGGTTCSEEEECSC
T ss_pred             EEEEEe-ecHHHHHHHHHHHH-CCCEEEEEECCchHHHHHHHhhccceeeeec-----ccccccccccccCc
Confidence            688999 89999988877777 49999999999999999998884 4443221     22356777777765

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.81  E-value=0.0028  Score=49.69  Aligned_cols=102  Identities=14%  Similarity=0.118  Sum_probs=66.6

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----c-C--CC-EEEcCCCcccccc-
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----L-G--AD-LAIDYTKENIEDL-  211 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~-g--~~-~v~~~~~~~~~~~-  211 (255)
                      .+....++||++||=.| + +.|.++..+|+.++ ..+++.++.+++..+.+++    + +  .+ ..+...+...... 
T Consensus        88 Ii~~l~i~PG~~VLE~G-~-GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~  165 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAG-A-GSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP  165 (264)
T ss_dssp             HHHHTTCCTTCEEEEEC-C-TTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred             HHHHhCCCCCCEEEecC-c-CCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc
Confidence            44678999999999887 4 44888889999863 4689999999999888854    2 1  12 1121111111111 


Q ss_pred             CCCccEEEECCCCc-cceeeeeeccccCCceEEEEe
Q 025278          212 PEKFDVVFDAVGKM-CISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       212 ~~~~d~vid~~G~~-~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      ...+|.||--...+ .....+.+.++ ++|+++.+-
T Consensus       166 ~~~fDaV~ldlp~P~~~l~~~~~~Lk-pGG~lv~~~  200 (264)
T d1i9ga_         166 DGSVDRAVLDMLAPWEVLDAVSRLLV-AGGVLMVYV  200 (264)
T ss_dssp             TTCEEEEEEESSCGGGGHHHHHHHEE-EEEEEEEEE
T ss_pred             CCCcceEEEecCCHHHHHHHHHhccC-CCCEEEEEe
Confidence            24689877545543 34444577777 899998764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.80  E-value=0.00093  Score=54.34  Aligned_cols=77  Identities=18%  Similarity=0.171  Sum_probs=53.8

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc-----CCC--EEEcC---CCccccccCCCcc
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL-----GAD--LAIDY---TKENIEDLPEKFD  216 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~-----g~~--~v~~~---~~~~~~~~~~~~d  216 (255)
                      -+.+|++|||+||+|-+|...+..+... |.+|++++++.++.+.++++     ...  ..+..   +...+.+...++|
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~-G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   85 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEH-GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccch
Confidence            4678999999999999999988877764 99999999988776655321     111  12221   1223344456899


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      .++.+.+.
T Consensus        86 ~v~~~a~~   93 (342)
T d1y1pa1          86 GVAHIASV   93 (342)
T ss_dssp             EEEECCCC
T ss_pred             hhhhhccc
Confidence            99988774

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.78  E-value=0.00043  Score=54.11  Aligned_cols=69  Identities=12%  Similarity=-0.008  Sum_probs=48.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcC----CCEEEcCCCccccc-------cCCCccEEEE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLG----ADLAIDYTKENIED-------LPEKFDVVFD  220 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~-------~~~~~d~vid  220 (255)
                      .|+||+||++++|++.+..+... |++|++.+++.++++.+++.+    ...+.+..  +..+       .-+++|++|+
T Consensus         1 ~TAlVTGas~GiG~aiA~~la~~-Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~--~~~~~~~~~~~~~G~iDiLVn   77 (252)
T d1zmta1           1 STAIVTNVKHFGGMGSALRLSEA-GHTVACHDESFKQKDELEAFAETYPQLKPMSEQ--EPAELIEAVTSAYGQVDVLVS   77 (252)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHT-TCEEEECCGGGGSHHHHHHHHHHCTTSEECCCC--SHHHHHHHHHHHHSCCCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHhhhCcEEEeccCCHH--HHHHHHHHHHHHcCCCCEEEE
Confidence            37899999999999987777664 999999999888877765432    22222221  2111       1247999999


Q ss_pred             CCC
Q 025278          221 AVG  223 (255)
Q Consensus       221 ~~G  223 (255)
                      +.|
T Consensus        78 NAg   80 (252)
T d1zmta1          78 NDI   80 (252)
T ss_dssp             ECC
T ss_pred             CCc
Confidence            877

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0011  Score=49.04  Aligned_cols=82  Identities=16%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             HHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcC----C-CEEEcCCC-cccc
Q 025278          141 EGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLG----A-DLAIDYTK-ENIE  209 (255)
Q Consensus       141 ~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g----~-~~v~~~~~-~~~~  209 (255)
                      ++++..++ -.+++|+|+| +|+.+.+++..+...+..+++++.|++++.+.+    ++++    . ..+.+..+ ..+.
T Consensus         7 ~~l~~~~~~l~~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFA   85 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred             HHHHHcCCCcCCCEEEEEC-CcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchh
Confidence            34443332 3678999999 899999988888875334566778877665533    2322    1 11222222 1122


Q ss_pred             ccCCCccEEEECCC
Q 025278          210 DLPEKFDVVFDAVG  223 (255)
Q Consensus       210 ~~~~~~d~vid~~G  223 (255)
                      +....+|++|+|+.
T Consensus        86 ~~~~~~diiIN~Tp   99 (182)
T d1vi2a1          86 EALASADILTNGTK   99 (182)
T ss_dssp             HHHHTCSEEEECSS
T ss_pred             hhhcccceeccccC
Confidence            22347899999986

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.70  E-value=0.0028  Score=48.97  Aligned_cols=71  Identities=20%  Similarity=0.323  Sum_probs=47.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCc-------EEEEecChhhHHHH----HHcCCCEE-E--cCCCcc-cc-------c
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGAS-------KVAATSSTAKLDLL----RSLGADLA-I--DYTKEN-IE-------D  210 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~-------vi~~~~~~~~~~~~----~~~g~~~v-~--~~~~~~-~~-------~  210 (255)
                      .|||+||++++|.+.+..+... |++       ++..++++++++.+    ++.|.... +  |-.+.+ ..       +
T Consensus         3 VvlITGas~GIG~aia~~la~~-G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARA-ARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH-TTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHh-CccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4789999999999977766664 887       88889999887655    23453322 2  333221 11       1


Q ss_pred             cCCCccEEEECCCC
Q 025278          211 LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 ~~~~~d~vid~~G~  224 (255)
                      ..+.+|+++++.|.
T Consensus        82 ~~g~iDilvnnAg~   95 (240)
T d2bd0a1          82 RYGHIDCLVNNAGV   95 (240)
T ss_dssp             HTSCCSEEEECCCC
T ss_pred             HcCCcceeeccccc
Confidence            13579999999984

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.69  E-value=0.0011  Score=50.95  Aligned_cols=37  Identities=22%  Similarity=0.474  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK  188 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~  188 (255)
                      +.+|||+||++++|.+.++.+... |++|+.+++++++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~-G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKN-GYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCchh
Confidence            346899999999999988888874 9999999987654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.68  E-value=0.0012  Score=50.64  Aligned_cols=93  Identities=18%  Similarity=0.205  Sum_probs=65.2

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCC---
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVG---  223 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G---  223 (255)
                      ...++.+||=.| +| .|..+..+++.  +.+|+++|.+++-++.+++.+.+..+..+..+..-..+.+|+|+-...   
T Consensus        39 ~~~~~~~vLDiG-cG-~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~  114 (246)
T d2avna1          39 YLKNPCRVLDLG-GG-TGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLS  114 (246)
T ss_dssp             HCCSCCEEEEET-CT-TCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred             hcCCCCEEEEEC-CC-Cchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhh
Confidence            356778999888 65 69999888874  889999999999999999877666666554444322357999986533   


Q ss_pred             ---Cc-cceeeeeeccccCCceEEE
Q 025278          224 ---KM-CISIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       224 ---~~-~~~~~~~~~~~~~~G~~v~  244 (255)
                         .. .....+.+.++ ++|.+++
T Consensus       115 ~~~d~~~~l~~i~r~Lk-~gG~~ii  138 (246)
T d2avna1         115 YVENKDKAFSEIRRVLV-PDGLLIA  138 (246)
T ss_dssp             HCSCHHHHHHHHHHHEE-EEEEEEE
T ss_pred             hhhhHHHHHHHHHhhcC-cCcEEEE
Confidence               11 12223455666 7887765

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.66  E-value=0.0013  Score=49.87  Aligned_cols=72  Identities=19%  Similarity=0.219  Sum_probs=46.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCc--EEEEecChhhHHHHHHcCCCEE-EcCCCc-cccccCCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGAS--KVAATSSTAKLDLLRSLGADLA-IDYTKE-NIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~--vi~~~~~~~~~~~~~~~g~~~v-~~~~~~-~~~~~~~~~d~vid~~G~~  225 (255)
                      .+|||+||+|.+|...+..+... |.+  ++...+++++...... +...+ .|..+. .+.+..+++|.||.+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~-g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~   79 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVILTSAV   79 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHT-TTTCEEEEEESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHC-CCcEEEEEEcCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEEEeec
Confidence            58999999999999999888774 654  5566788776654332 23322 222221 2223346899999998743

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.63  E-value=0.0033  Score=47.15  Aligned_cols=69  Identities=26%  Similarity=0.359  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      -.|.+|+|.| .|.+|..+++++... |+++++.+.+.++......+|.+.+ +..  ++  ....+|+++=|.-+
T Consensus        25 L~gk~v~IqG-~G~VG~~~A~~L~~~-Gakvvv~d~d~~~~~~~~~~g~~~~-~~~--~~--~~~~~DI~iPcA~~   93 (201)
T d1c1da1          25 LDGLTVLVQG-LGAVGGSLASLAAEA-GAQLLVADTDTERVAHAVALGHTAV-ALE--DV--LSTPCDVFAPCAMG   93 (201)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCEEC-CGG--GG--GGCCCSEEEECSCS
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEecchHHHHHHHHhhccccc-Ccc--cc--ccccceeeeccccc
Confidence            4789999999 999999999999995 9999999999999999888887543 211  11  12356777765443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.63  E-value=0.0036  Score=45.38  Aligned_cols=74  Identities=20%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCCEEEcCCCcc---ccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADLAIDYTKEN---IEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~v~~~~~~~---~~~~~~~~d~vid~~G~~  225 (255)
                      .+++|+|+| +|.+|..+++.+.. .|.+|++++++.++.+.+.+ ++...+.......   ........|.++.++...
T Consensus         1 ~~K~IliiG-aG~~G~~~a~~L~~-~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~   78 (182)
T d1e5qa1           1 ATKSVLMLG-SGFVTRPTLDVLTD-SGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   78 (182)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHT-TTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGG
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccch
Confidence            368999999 79999999998887 49999999999999988764 4432222211111   111234667787776543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.50  E-value=0.0024  Score=46.88  Aligned_cols=72  Identities=17%  Similarity=0.266  Sum_probs=46.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcC----CCEEEcCCCccccccCCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLG----ADLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g----~~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      -.+++|+|+| +|+.+.+++..+..  ..++.++.|+.+|.+.+. ++.    ........-.++......+|++++|+.
T Consensus        16 ~~~k~vlIlG-aGG~arai~~aL~~--~~~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          16 VKDKNIVIYG-AGGAARAVAFELAK--DNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCSCEEEEEC-CSHHHHHHHHHHTS--SSEEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHcc--ccceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            4778999999 89999988777654  337888899988876552 221    111000000112223357899999987

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.50  E-value=0.002  Score=50.28  Aligned_cols=98  Identities=16%  Similarity=0.227  Sum_probs=63.1

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC-EEEcCCCccccccCCCccEEEEC
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD-LAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      ..++|++||=.| +|. |.+++.+++.  |.+|+++|.+++..+.+++    .|.. .++..+..+.. ..+.+|+|+-.
T Consensus       117 ~~~~g~~VLDiG-cGs-G~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~-~~~~fD~V~an  191 (254)
T d2nxca1         117 HLRPGDKVLDLG-TGS-GVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL-PFGPFDLLVAN  191 (254)
T ss_dssp             HCCTTCEEEEET-CTT-SHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHG-GGCCEEEEEEE
T ss_pred             hcCccCEEEEcc-cch-hHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccc-cccccchhhhc
Confidence            467999999998 654 7777776653  7899999999998877753    3432 33333222211 13579999965


Q ss_pred             CCCcc---ceeeeeeccccCCceEEEEeeccC
Q 025278          222 VGKMC---ISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       222 ~G~~~---~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .-...   ....+.+.++ ++|++++.|....
T Consensus       192 i~~~~l~~l~~~~~~~Lk-pGG~lilSgil~~  222 (254)
T d2nxca1         192 LYAELHAALAPRYREALV-PGGRALLTGILKD  222 (254)
T ss_dssp             CCHHHHHHHHHHHHHHEE-EEEEEEEEEEEGG
T ss_pred             cccccHHHHHHHHHHhcC-CCcEEEEEecchh
Confidence            44221   1122345566 8999999887654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.45  E-value=0.0012  Score=48.49  Aligned_cols=97  Identities=18%  Similarity=0.107  Sum_probs=62.0

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecC-hhhHHHHHHcCCCEEEcCCCc--c-----------ccccCCCccE
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSS-TAKLDLLRSLGADLAIDYTKE--N-----------IEDLPEKFDV  217 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~-~~~~~~~~~~g~~~v~~~~~~--~-----------~~~~~~~~d~  217 (255)
                      +|.|.| .|-+|......+......+++.+ +.+ ++....+.+.+.+......+.  .           +.+...++|+
T Consensus         4 rIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           4 KVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            689999 99999998888776445677766 333 345556677776543321111  0           1111247999


Q ss_pred             EEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          218 VFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       218 vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      |+||+|...+...+..-+. .+-+.|+.+.+.++
T Consensus        83 ViEcTG~f~~~~~~~~hl~-~G~k~Vi~s~~~~~  115 (172)
T d2czca2          83 IVDATPGGIGAKNKPLYEK-AGVKAIFQGGEKAD  115 (172)
T ss_dssp             EEECCSTTHHHHHHHHHHH-HTCEEEECTTSCGG
T ss_pred             EEECCCCCCCHHHHHHHHH-cCCCEEEECCCCcc
Confidence            9999998776666654444 45677777766553

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=96.43  E-value=0.015  Score=42.08  Aligned_cols=100  Identities=12%  Similarity=0.071  Sum_probs=60.9

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ec--ChhhHHHHHHcC-------CCE-------EEcCCC------cccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA-TS--STAKLDLLRSLG-------ADL-------AIDYTK------ENIE  209 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~--~~~~~~~~~~~g-------~~~-------v~~~~~------~~~~  209 (255)
                      +|.|.| -|-+|.++...+......+++++ +.  +.+.+.++-++-       .+.       +++...      .+..
T Consensus         3 kIgING-FGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~   81 (169)
T d1u8fo1           3 KVGVNG-FGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   81 (169)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             EEEEEC-CcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCChh
Confidence            688999 99999999988776556777776 32  445666664432       111       111100      0111


Q ss_pred             c--c-CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCCCC
Q 025278          210 D--L-PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVPK  254 (255)
Q Consensus       210 ~--~-~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~~~  254 (255)
                      +  + ..++|+|+||+|.......+..-+. .+-+-+++..+.++.++
T Consensus        82 ~i~W~~~~vDiViEcTG~f~~~~~~~~hl~-~gakkViiSaP~~d~~t  128 (169)
T d1u8fo1          82 KIKWGDAGAEYVVESTGVFTTMEKAGAHLQ-GGAKRVIISAPSADAPM  128 (169)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSHHHHGGGGG-GTCSEEEESSCCSSSCB
T ss_pred             hCCccccCCCEEEEecceeccHHHHHHHHh-cCCceEeecccccccce
Confidence            1  1 1379999999997666555544444 35566777777766554

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.01  Score=45.52  Aligned_cols=99  Identities=19%  Similarity=0.137  Sum_probs=63.6

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCCCcc
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~d  216 (255)
                      ...++++|++||=+| +|. |..+..+++. .+++++.++.+++-.+.+++    .|..   .....+..+. ...+.+|
T Consensus        27 ~~~~l~pg~~VLDiG-CG~-G~~~~~la~~-~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD  102 (245)
T d1nkva_          27 RVLRMKPGTRILDLG-SGS-GEMLCTWARD-HGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCD  102 (245)
T ss_dssp             HHTCCCTTCEEEEET-CTT-CHHHHHHHHH-TCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEE
T ss_pred             HHcCCCCCCEEEEEc-CCC-CHHHHHHHHh-cCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCcee
Confidence            678899999999998 444 6677778877 48999999999987776644    4532   2222222222 1235799


Q ss_pred             EEEECCC------CccceeeeeeccccCCceEEEEee
Q 025278          217 VVFDAVG------KMCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       217 ~vid~~G------~~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      +|+-.-.      -......+.+.++ ++|++++.-.
T Consensus       103 ~v~~~~~~~~~~d~~~~l~~~~r~Lk-PGG~l~i~~~  138 (245)
T d1nkva_         103 VAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEP  138 (245)
T ss_dssp             EEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEE
T ss_pred             EEEEEehhhccCCHHHHHHHHHHHcC-cCcEEEEEec
Confidence            9884322      2223333466677 8899877543

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.38  E-value=0.0052  Score=47.70  Aligned_cols=36  Identities=17%  Similarity=0.235  Sum_probs=30.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL  189 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~  189 (255)
                      +.||+||++++|.+.+..+... |++|++++++.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~-G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQ-GFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCchHH
Confidence            5699999999999988887774 99999999876543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.34  E-value=0.0046  Score=47.76  Aligned_cols=71  Identities=23%  Similarity=0.370  Sum_probs=46.8

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-cChhhHHHH----HHcCCCE-EE--cCCCcc-cc-------ccCCCcc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAAT-SSTAKLDLL----RSLGADL-AI--DYTKEN-IE-------DLPEKFD  216 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~~~~~~~~~----~~~g~~~-v~--~~~~~~-~~-------~~~~~~d  216 (255)
                      .+||+||++++|.+.++.+... |++|++.+ +++++++.+    ++.|.+. .+  |-.+.+ ..       +..+++|
T Consensus         3 V~lITGas~GIG~a~a~~la~~-Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKA-GCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5899999999999988777774 99998875 465555544    3455432 22  322221 11       1135799


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      ++++++|.
T Consensus        82 iLVnnAg~   89 (244)
T d1edoa_          82 VVVNNAGI   89 (244)
T ss_dssp             EEEECCCC
T ss_pred             cccccccc
Confidence            99999883

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.33  E-value=0.004  Score=43.19  Aligned_cols=75  Identities=24%  Similarity=0.333  Sum_probs=55.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEc-CCCccc-ccc-CCCccEEEECCCCccce
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID-YTKENI-EDL-PEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~-~~~~~~-~~~-~~~~d~vid~~G~~~~~  228 (255)
                      ++++|.| .|-+|..+++.+... |.++++++.++++.+.+++.+...++- ..+.+. .+. ...+|.+|=+++.....
T Consensus         1 k~~iIiG-~G~~G~~la~~L~~~-g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~   78 (134)
T d2hmva1           1 KQFAVIG-LGRFGGSIVKELHRM-GHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA   78 (134)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHT-TCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHh
Confidence            3578888 899999999999984 999999999999999998888655442 222221 111 34689998888865433

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.29  E-value=0.0035  Score=47.59  Aligned_cols=100  Identities=16%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC--EEEcCCCccccccCCCcc
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~~d  216 (255)
                      ++..+++++++||=+| +| .|..+..+++.  +.+++++|.+++-++.+++    .+.+  .++..+..+..-..+.+|
T Consensus         8 l~~~~l~~~~rVLDiG-cG-~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           8 MQIAALKGNEEVLDVA-TG-GGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHTCCSCCEEEEET-CT-TCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred             HHhcCCCCcCEEEEec-cc-CcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence            4678899999999999 55 68888888765  7899999999987776643    4433  223333222221234699


Q ss_pred             EEEECCCC------ccceeeeeeccccCCceEEEEee
Q 025278          217 VVFDAVGK------MCISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       217 ~vid~~G~------~~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      +|+-.-.-      ......+.+.++ ++|++++.-.
T Consensus        84 ~v~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~  119 (231)
T d1vl5a_          84 IVTCRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDN  119 (231)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             cccccccccccCCHHHHHHHHHHhcC-CCcEEEEEeC
Confidence            99855331      122334566677 8999888643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.01  Score=47.79  Aligned_cols=102  Identities=20%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cC-----------CCE--EEcC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LG-----------ADL--AIDY  203 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g-----------~~~--v~~~  203 (255)
                      .+...+++||++||=.| +|. |.++..+|+.++ ..+|+.++.+++..+.+++    ++           .+.  ..+.
T Consensus        90 Il~~l~i~pG~rVLE~G-tGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~  167 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAG-SGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  167 (324)
T ss_dssp             HHHHHTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HHHHhCCCCCCEEEEec-ccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec
Confidence            44677899999999887 544 889999999863 4689999999998887753    11           111  1111


Q ss_pred             CCcccc-c-cCCCccEEEECCCC-ccceeeeeeccccCCceEEEEe
Q 025278          204 TKENIE-D-LPEKFDVVFDAVGK-MCISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       204 ~~~~~~-~-~~~~~d~vid~~G~-~~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      +-.+.. . ....+|.||=-... ......+.+.++ ++|+++.|-
T Consensus       168 di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LK-pGG~lv~~~  212 (324)
T d2b25a1         168 DISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLK-HGGVCAVYV  212 (324)
T ss_dssp             CTTCCC-------EEEEEECSSSTTTTHHHHGGGEE-EEEEEEEEE
T ss_pred             chhhcccccCCCCcceEeecCcCHHHHHHHHHHhcc-CCCEEEEEe
Confidence            111111 1 12357887743333 334455577777 899998864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.25  E-value=0.0066  Score=46.28  Aligned_cols=99  Identities=14%  Similarity=0.164  Sum_probs=63.1

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC--EEEcCCCccccccCCCccE
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD--LAIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~~d~  217 (255)
                      +.+.+++|++||=+| +| .|..+..+++.  +.+++++|.+++-++.+++    .+.+  .++..+..+..-..+.+|+
T Consensus        10 ~~~~~~~~~rILDiG-cG-tG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~   85 (234)
T d1xxla_          10 KTAECRAEHRVLDIG-AG-AGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI   85 (234)
T ss_dssp             HHHTCCTTCEEEEES-CT-TSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred             HHhCCCCCCEEEEeC-Cc-CcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccce
Confidence            678899999999998 44 48888888875  6899999999987776643    3332  1222222222111346999


Q ss_pred             EEECCCCc------cceeeeeeccccCCceEEEEee
Q 025278          218 VFDAVGKM------CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       218 vid~~G~~------~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      |+-+-.-.      .....+.+.++ ++|++++.-.
T Consensus        86 v~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~~~~~~~  120 (234)
T d1xxla_          86 ITCRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDH  120 (234)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             eeeeceeecccCHHHHHHHHHHeeC-CCcEEEEEEc
Confidence            98653321      22333456666 7898887543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.22  E-value=0.004  Score=45.91  Aligned_cols=99  Identities=11%  Similarity=0.031  Sum_probs=62.6

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCCCcc
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~d  216 (255)
                      ...++++|++||=+| +| .|..++.+|+.  +.+|++++.+++.++.+++    +|..   .++..+..+.....+.+|
T Consensus        27 ~~l~~~~g~~VLDiG-cG-sG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D  102 (186)
T d1l3ia_          27 CLAEPGKNDVAVDVG-CG-TGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDID  102 (186)
T ss_dssp             HHHCCCTTCEEEEES-CT-TSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEE
T ss_pred             HhcCCCCCCEEEEEE-CC-eEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcC
Confidence            456889999999888 43 46667777764  6799999999998887753    5532   233333222222235799


Q ss_pred             EEEECCCCc---cceeeeeeccccCCceEEEEee
Q 025278          217 VVFDAVGKM---CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       217 ~vid~~G~~---~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      .||-.-+..   .....+.+.++ ++|+++....
T Consensus       103 ~v~~~~~~~~~~~~~~~~~~~Lk-pgG~lvi~~~  135 (186)
T d1l3ia_         103 IAVVGGSGGELQEILRIIKDKLK-PGGRIIVTAI  135 (186)
T ss_dssp             EEEESCCTTCHHHHHHHHHHTEE-EEEEEEEEEC
T ss_pred             EEEEeCccccchHHHHHHHHHhC-cCCEEEEEee
Confidence            988543322   22233345566 7898887643

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.21  E-value=0.013  Score=42.29  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=38.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEecChhhHHHHHHcCC-CEEE
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFG--ASKVAATSSTAKLDLLRSLGA-DLAI  201 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g--~~vi~~~~~~~~~~~~~~~g~-~~v~  201 (255)
                      +|+|+| +|.+|...+..++.. +  .++++.+++++.++.+++.+. +...
T Consensus         3 ~I~IIG-~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~~~~~~~~   52 (171)
T d2g5ca2           3 NVLIVG-VGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDLGIIDEGT   52 (171)
T ss_dssp             EEEEES-CSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHTTSCSEEE
T ss_pred             EEEEEc-cCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHhhcchhhh
Confidence            689999 899999988888774 5  478899999999999998884 4443

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0028  Score=48.42  Aligned_cols=75  Identities=19%  Similarity=0.309  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC--cEEEEecChhhHHHHHHcCCCEE-EcCCC-ccccccCCCccEEEECCCCc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA--SKVAATSSTAKLDLLRSLGADLA-IDYTK-ENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~--~vi~~~~~~~~~~~~~~~g~~~v-~~~~~-~~~~~~~~~~d~vid~~G~~  225 (255)
                      .+++|||+||+|-+|...++.+... +.  ++++++|++.+...-..-..... .|..+ +++.+...++|++|.|+|..
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~-g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhC-CCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence            4478999999999999988888774 53  78898886544322111112222 22221 23444456899999998853

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.02  Score=41.88  Aligned_cols=75  Identities=21%  Similarity=0.207  Sum_probs=54.2

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-----------------------hHHHHHHcCCCEEEcC
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-----------------------KLDLLRSLGADLAIDY  203 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-----------------------~~~~~~~~g~~~v~~~  203 (255)
                      ....+++|+|+| +|+.|+.++..+.. .|.+|.+++.+++                       -.+.++++|.+..+|.
T Consensus        39 ~~~~~k~V~IIG-aGPAGL~AA~~la~-~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~  116 (179)
T d1ps9a3          39 PAVQKKNLAVVG-AGPAGLAFAINAAA-RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNH  116 (179)
T ss_dssp             SCSSCCEEEEEC-CSHHHHHHHHHHHT-TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESC
T ss_pred             CCCCCcEEEEEC-ccHHHHHHHHHHHh-hccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCC
Confidence            345678999999 89999999999988 4999999987642                       1123355777766654


Q ss_pred             CCccccccCCCccEEEECCCCc
Q 025278          204 TKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       204 ~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      .-.  .+...++|.||-++|..
T Consensus       117 ~Vt--~~~~~~~d~vilAtG~~  136 (179)
T d1ps9a3         117 TVT--ADQLQAFDETILASGIP  136 (179)
T ss_dssp             CCC--SSSSCCSSEEEECCCEE
T ss_pred             EEc--ccccccceeEEEeecCC
Confidence            321  12345899999999954

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0041  Score=47.45  Aligned_cols=100  Identities=13%  Similarity=0.052  Sum_probs=63.4

Q ss_pred             hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc-CCCEE----------------------E
Q 025278          145 RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL-GADLA----------------------I  201 (255)
Q Consensus       145 ~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~-g~~~v----------------------~  201 (255)
                      .....++.+||..| +|. |..+..+|+.  |.+|+++|.+++-++.+++. +....                      +
T Consensus        40 ~l~~~~~~rvLd~G-CG~-G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  115 (229)
T d2bzga1          40 FLKGKSGLRVFFPL-CGK-AVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY  115 (229)
T ss_dssp             HHTTCCSCEEEETT-CTT-CTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred             hcCCCCCCEEEEeC-CCC-cHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence            34567889999998 665 8999999874  99999999999988887643 21111                      0


Q ss_pred             cCCCccc-cccCCCccEEEECCCCc--------cceeeeeeccccCCceEEEEeecc
Q 025278          202 DYTKENI-EDLPEKFDVVFDAVGKM--------CISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       202 ~~~~~~~-~~~~~~~d~vid~~G~~--------~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ..+-.+. ......+|+|+++.--.        .......+.++ ++|++++.....
T Consensus       116 ~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lk-pgG~~~l~~~~~  171 (229)
T d2bzga1         116 CCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLG-KKFQYLLCVLSY  171 (229)
T ss_dssp             ESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE-EEEEEEEEEEEC
T ss_pred             EcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcC-CcceEEEEEccc
Confidence            0000011 11124689999875411        11123456666 789887776654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.04  E-value=0.013  Score=45.90  Aligned_cols=102  Identities=13%  Similarity=0.044  Sum_probs=65.2

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccccccCCCcc
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~d  216 (255)
                      ....+.+|++||=+| +| .|..+..+++.. +++|++++.++..++.+++    .|..   .++..+..+..-..+.+|
T Consensus        61 ~~~~l~~~~~vLDiG-cG-~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD  137 (282)
T d2o57a1          61 MTGVLQRQAKGLDLG-AG-YGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYD  137 (282)
T ss_dssp             HTTCCCTTCEEEEET-CT-TSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEE
T ss_pred             HhcCCCCCCEEEEeC-CC-CcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            456789999999998 54 577888888874 8999999999987776643    3422   223332222221235699


Q ss_pred             EEEECCCC------ccceeeeeeccccCCceEEEEeecc
Q 025278          217 VVFDAVGK------MCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       217 ~vid~~G~------~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      +|+-.-.-      ......+.+.++ ++|++++.....
T Consensus       138 ~V~~~~~l~h~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~  175 (282)
T d2o57a1         138 FIWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPMK  175 (282)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEE
T ss_pred             hhhccchhhhccCHHHHHHHHHHhcC-CCcEEEEEEeec
Confidence            99854221      112223455666 789988876543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.98  E-value=0.0064  Score=44.42  Aligned_cols=39  Identities=21%  Similarity=0.349  Sum_probs=34.0

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      +|.|+||+|++|.+.++.+... |.+|++..|++++.+.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~-G~~V~l~~R~~e~~~~l   40 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATL-GHEIVVGSRREEKAEAK   40 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH
Confidence            6888877999999988888874 99999999999987765

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.0043  Score=48.29  Aligned_cols=43  Identities=19%  Similarity=0.251  Sum_probs=34.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHH-HHH-hcCCcEEEEecChhhHHHH
Q 025278          150 AGKSILVLGGAGGVGTMVIQL-AKH-VFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~-a~~-~~g~~vi~~~~~~~~~~~~  192 (255)
                      .|+.++|+||++++|.+.++. |+. ..|++|+++++++++++.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~   49 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHH
Confidence            578899999999999987654 442 1489999999999988765

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.89  E-value=0.011  Score=45.76  Aligned_cols=76  Identities=25%  Similarity=0.314  Sum_probs=48.8

Q ss_pred             cCCCCEEEEEcCC--chHHHHHHHHHHHhcCCcEEEEecChhhHH-HH-HHcCCCE---EEcCCCcc-ccc---------
Q 025278          148 FSAGKSILVLGGA--GGVGTMVIQLAKHVFGASKVAATSSTAKLD-LL-RSLGADL---AIDYTKEN-IED---------  210 (255)
Q Consensus       148 ~~~g~~VlI~ga~--g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~-~~-~~~g~~~---v~~~~~~~-~~~---------  210 (255)
                      .-.|+++||+||+  .++|.+.++-+.. .|++|+++.++++++. .+ ++++...   ..|..++. ...         
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~-~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~   81 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQE-QGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI   81 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHH-TTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHH-cCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcc
Confidence            3478999999965  4699988776666 4999999998877753 23 4555322   12222211 100         


Q ss_pred             -cCCCccEEEECCCC
Q 025278          211 -LPEKFDVVFDAVGK  224 (255)
Q Consensus       211 -~~~~~d~vid~~G~  224 (255)
                       ..+.+|+++++.|.
T Consensus        82 ~~~~~ld~~i~~ag~   96 (268)
T d2h7ma1          82 GAGNKLDGVVHSIGF   96 (268)
T ss_dssp             CTTCCEEEEEECCCC
T ss_pred             ccCCCcceeeecccc
Confidence             12468999999883

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.89  E-value=0.005  Score=45.19  Aligned_cols=94  Identities=17%  Similarity=0.095  Sum_probs=55.1

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecCh-hhHHHHHHcCCCEEEcCCCc-cc-----------cccCCCccEE
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSST-AKLDLLRSLGADLAIDYTKE-NI-----------EDLPEKFDVV  218 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~-~~~~~~~~~g~~~v~~~~~~-~~-----------~~~~~~~d~v  218 (255)
                      +|.|.| .|-+|...++.+......+++++ +.++ .....+...+.......+.. .+           .+...++|+|
T Consensus         3 KVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            588999 99999999999987556777776 3433 33344444443332211110 01           1111368999


Q ss_pred             EECCCCccceeeeeeccccCCceEEEEeec
Q 025278          219 FDAVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       219 id~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      +||+|.......+...++ .+-+.++.|..
T Consensus        82 iecTG~f~~~e~a~~hl~-~G~KvIi~~~~  110 (178)
T d1b7go1          82 VDTTPNGVGAQYKPIYLQ-LQRNAIFQGGE  110 (178)
T ss_dssp             EECCSTTHHHHHHHHHHH-TTCEEEECTTS
T ss_pred             EECCCCcCCHHHHHHHHH-cCCEEEEECCC
Confidence            999997665555555453 23355554443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.81  E-value=0.0052  Score=46.94  Aligned_cols=38  Identities=29%  Similarity=0.296  Sum_probs=32.3

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL  189 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~  189 (255)
                      .+++||+||++++|.+.++.+... |++|+++++++++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~-Ga~V~i~~~~~~~~   38 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKAR-GYRVVVLDLRREGE   38 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCCSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCcccc
Confidence            368999999999999988877774 99999999877643

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.76  E-value=0.017  Score=43.96  Aligned_cols=102  Identities=22%  Similarity=0.137  Sum_probs=65.9

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHHc----CCCEEEcCCCcc---ccccCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRSL----GADLAIDYTKEN---IEDLPE  213 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~~----g~~~v~~~~~~~---~~~~~~  213 (255)
                      +++...++||++||=.| +| .|..+..+|+..+ ..+|++++.+++.++.+++.    +-...+..+...   +.....
T Consensus        65 ~l~~l~i~pG~~VLDlG-aG-sG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~  142 (227)
T d1g8aa_          65 GLKNFPIKPGKSVLYLG-IA-SGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVP  142 (227)
T ss_dssp             TCCCCCCCTTCEEEEET-TT-STTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCC
T ss_pred             cccccccCCCCEEEEec-cC-CCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccccccc
Confidence            45667899999999998 44 4888888888863 47899999999988877542    222222222222   222235


Q ss_pred             CccEEEECCCCccc----eeeeeeccccCCceEEEEe
Q 025278          214 KFDVVFDAVGKMCI----SIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       214 ~~d~vid~~G~~~~----~~~~~~~~~~~~G~~v~~G  246 (255)
                      .+|+++........    ...+.+.++ ++|+++++=
T Consensus       143 ~vD~i~~d~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~  178 (227)
T d1g8aa_         143 KVDVIFEDVAQPTQAKILIDNAEVYLK-RGGYGMIAV  178 (227)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             ceEEEEEEccccchHHHHHHHHHHhcc-cCCeEEEEE
Confidence            78988876553322    333355566 789887753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0055  Score=39.73  Aligned_cols=71  Identities=15%  Similarity=0.250  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh--hHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA--KLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      .|++|+|+| .|..|+.+++++... |++|++.|.++.  ..+.+++ +....+...+.   ....++|.++=+.|-+.
T Consensus         4 ~~K~v~ViG-lG~sG~s~a~~L~~~-g~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~d~vi~SPGi~~   76 (93)
T d2jfga1           4 QGKNVVIIG-LGLTGLSCVDFFLAR-GVTPRVMDTRMTPPGLDKLPE-AVERHTGSLND---EWLMAADLIVASPGIAL   76 (93)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHHT-TCCCEEEESSSSCTTGGGSCT-TSCEEESBCCH---HHHHHCSEEEECTTSCT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHC-CCEEEEeeCCcCchhHHHHhh-ccceeecccch---hhhccCCEEEECCCCCC
Confidence            578899999 899999999999995 999999987443  2222222 23333332211   11247899999888544

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.71  E-value=0.024  Score=42.47  Aligned_cols=101  Identities=18%  Similarity=0.175  Sum_probs=63.0

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCCEEEcCCCcccc---ccCCCcc
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGADLAIDYTKENIE---DLPEKFD  216 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~---~~~~~~d  216 (255)
                      ....++||++||=.| +|. |..+..+++.....+|++++.+++.++.+++    .+-...+..+..+..   .....+|
T Consensus        50 ~~l~lkpg~~VLDlG-cG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd  127 (209)
T d1nt2a_          50 HRLKLRGDERVLYLG-AAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD  127 (209)
T ss_dssp             CCCCCCSSCEEEEET-CTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE
T ss_pred             ccCCCCCCCEEEEeC-CcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEE
Confidence            457899999999999 443 6677778877655689999999988877633    331122222222211   1234688


Q ss_pred             EEEECCCCccc----eeeeeeccccCCceEEEEee
Q 025278          217 VVFDAVGKMCI----SIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       217 ~vid~~G~~~~----~~~~~~~~~~~~G~~v~~G~  247 (255)
                      +++........    ...+.+.++ ++|+++.+-.
T Consensus       128 ~v~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~  161 (209)
T d1nt2a_         128 LIYQDIAQKNQIEILKANAEFFLK-EKGEVVIMVK  161 (209)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             EEEecccChhhHHHHHHHHHHHhc-cCCeEEEEEE
Confidence            88866543332    233355666 7898877643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.71  E-value=0.029  Score=37.78  Aligned_cols=43  Identities=14%  Similarity=0.256  Sum_probs=35.5

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      .+.....++++|+|.| +|.+|+=.++.++.. +.++.++.+.+.
T Consensus        14 ~~~l~~~~~~~vvVvG-gG~ig~E~A~~l~~~-g~~vt~i~~~~~   56 (121)
T d1mo9a2          14 VEELDYEPGSTVVVVG-GSKTAVEYGCFFNAT-GRRTVMLVRTEP   56 (121)
T ss_dssp             HHHCCSCCCSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCT
T ss_pred             HHHHhhCCCCEEEEEC-CCHHHHHHHHHHHhc-chhheEeeccch
Confidence            3455667889999999 899999988888884 999999987653

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=95.70  E-value=0.016  Score=41.99  Aligned_cols=100  Identities=17%  Similarity=0.221  Sum_probs=63.7

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEe-c--ChhhHHHHHHcC-------CCEE-------EcCCC------cccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAAT-S--STAKLDLLRSLG-------ADLA-------IDYTK------ENIE  209 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~-~--~~~~~~~~~~~g-------~~~v-------~~~~~------~~~~  209 (255)
                      +|.|.| -|-+|.++.+.+... +.+++++- .  +.+.+.++-++-       .+..       +|...      .+..
T Consensus         2 kIgING-fGRIGR~~~R~~~~~-~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~   79 (169)
T d1dssg1           2 KIGING-FGRIGRLVLRAALEM-GAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE   79 (169)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHH-TCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEC-CcHHHHHHHHHHHhC-CCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH
Confidence            578999 999999999998885 88888773 2  345666664432       1111       11100      0111


Q ss_pred             cc---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCCCCC
Q 025278          210 DL---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEVPKF  255 (255)
Q Consensus       210 ~~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~~~~  255 (255)
                      +.   ..++|+||||+|.......+..-++ .+-+-|++..+.++.++|
T Consensus        80 ~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~-~gakkViisaP~~d~~~i  127 (169)
T d1dssg1          80 NIPWSKAGAEYIVESTGVFTTIEKASAHFK-GGAKKVIISAPSADAPMF  127 (169)
T ss_dssp             GCCHHHHTCCEEEECSSSCCSHHHHGGGGT-TTCSEEEESSCCSSSCBC
T ss_pred             HCCccccCCCEEEecCceEcCHHHHHHHHh-cCCceEeecCCcccccee
Confidence            11   1279999999998777766666555 456677777777766653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.54  E-value=0.015  Score=44.45  Aligned_cols=104  Identities=18%  Similarity=0.068  Sum_probs=65.3

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc----CCCEEEcCCCcc---ccccCCC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL----GADLAIDYTKEN---IEDLPEK  214 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~----g~~~v~~~~~~~---~~~~~~~  214 (255)
                      +++...+++|++||=+| +| .|..+..+|+.....+|++++.+++-++.+++.    +-...+..+...   +......
T Consensus        66 gl~~l~ikpG~~VLDlG-cG-sG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~  143 (230)
T d1g8sa_          66 GLKVMPIKRDSKILYLG-AS-AGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEK  143 (230)
T ss_dssp             TCCCCCCCTTCEEEEES-CC-SSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCC
T ss_pred             hHHhCCCCCCCEEEEeC-EE-cCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccce
Confidence            35667899999999999 43 477788888864457899999999888877553    211222222222   2222335


Q ss_pred             ccEEEECCCCccc----eeeeeeccccCCceEEEEeec
Q 025278          215 FDVVFDAVGKMCI----SIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       215 ~d~vid~~G~~~~----~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      +|+++........    ...+...++ ++|+++++=..
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LK-pgG~~~i~~k~  180 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLK-KGGYGMIAIKA  180 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEE-EEEEEEEEEEG
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcc-cCceEEEEeec
Confidence            7777776653332    233345566 78988776443

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.53  E-value=0.021  Score=39.68  Aligned_cols=73  Identities=21%  Similarity=0.306  Sum_probs=51.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccc------cCCCccEEEECCCCc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIED------LPEKFDVVFDAVGKM  225 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~------~~~~~d~vid~~G~~  225 (255)
                      +|.|.|++|-+|...+.........+++......+........++|.++|.+.++...      ...+..+|+-++|-.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~~~~~DvvIDFS~p~~~~~~~~~~~~~~~~~ViGTTG~~   79 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFT   79 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHHTTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECCCCCC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhccccCCEEEEcccHHHHHHHHHHHHhcCCCEEEeccccc
Confidence            5889999999999988887765577777654444445555556788888876654221      124788899888844

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0068  Score=48.34  Aligned_cols=69  Identities=22%  Similarity=0.206  Sum_probs=44.4

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec-ChhhHHHHHHcCC---CEEEcCCCccccccCCCccEEEECCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATS-STAKLDLLRSLGA---DLAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~-~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      ++|||+||+|-+|...+..+.. .|.+|+++++ +..+.+.....-.   -.+.+.+.  ......++|+||.+++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~-~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~d~VihlAa   74 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV--VEPLYIEVDQIYHLAS   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCT--TSCCCCCCSEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHH--HHHHHcCCCEEEECcc
Confidence            5799999999999998888877 4999999875 2223222222111   12233221  2223357999999876

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=95.45  E-value=0.049  Score=39.22  Aligned_cols=95  Identities=12%  Similarity=0.135  Sum_probs=56.7

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEe--cChhhHHHHHHcCCC-----EEEcCCC---------------ccccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAAT--SSTAKLDLLRSLGAD-----LAIDYTK---------------ENIED  210 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~--~~~~~~~~~~~~g~~-----~v~~~~~---------------~~~~~  210 (255)
                      +|.|.| -|-+|.++.+++.. .+.+++++-  .+.+.+.++-++.-.     ..+...+               .+..+
T Consensus         2 kigING-fGRIGR~~~R~l~~-~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~   79 (168)
T d2g82a1           2 KVGING-FGRIGRQVFRILHS-RGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE   79 (168)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHH-HTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred             EEEEEC-CcHHHHHHHHHHhc-CCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHH
Confidence            588999 99999999998877 588888774  244455555443210     0011111               11111


Q ss_pred             c---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          211 L---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       211 ~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .   ..++|+|+||+|.......+..-++ .+-+-|++..+.+
T Consensus        80 i~W~~~gvdiViEcTG~f~~~~~~~~hl~-~gakkViiSAP~k  121 (168)
T d2g82a1          80 IPWAEAGVGVVIESTGVFTDADKAKAHLE-GGAKKVIITAPAK  121 (168)
T ss_dssp             CCTGGGTEEEEEECSSSCCBHHHHTHHHH-TTCSEEEESSCCB
T ss_pred             CcccccCCceeEeccccccchHHhhhhhc-cccceeeeccccc
Confidence            1   1379999999997766655555444 3445555566554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.41  E-value=0.012  Score=42.13  Aligned_cols=44  Identities=18%  Similarity=0.209  Sum_probs=37.7

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD  198 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~  198 (255)
                      +|-|+| .|.+|...+.-+.. .|.+|++.++++++.+.+++.++.
T Consensus         2 kIgiIG-lG~MG~~~A~~L~~-~G~~V~~~d~~~~~~~~~~~~~~~   45 (161)
T d1vpda2           2 KVGFIG-LGIMGKPMSKNLLK-AGYSLVVSDRNPEAIADVIAAGAE   45 (161)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCE
T ss_pred             EEEEEe-hhHHHHHHHHHHHH-CCCeEEEEeCCcchhHHHHHhhhh
Confidence            588999 99999998876666 499999999999999988887764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.32  E-value=0.079  Score=34.23  Aligned_cols=71  Identities=20%  Similarity=0.204  Sum_probs=51.6

Q ss_pred             cCCCCEEEEEcCCchHHHHH-HHHHHHhcCCcEEEEecC-hhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          148 FSAGKSILVLGGAGGVGTMV-IQLAKHVFGASKVAATSS-TAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a-~~~a~~~~g~~vi~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      .+..+++.++| -|++|+.+ +++++.. |..|...|.. ....+.+++.|......+...+    ..+.|+|+=+.+-
T Consensus         5 ~~~~~~ihfiG-igG~GMs~LA~~L~~~-G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~----i~~~d~vV~S~AI   77 (96)
T d1p3da1           5 MRRVQQIHFIG-IGGAGMSGIAEILLNE-GYQISGSDIADGVVTQRLAQAGAKIYIGHAEEH----IEGASVVVVSSAI   77 (96)
T ss_dssp             CTTCCEEEEET-TTSTTHHHHHHHHHHH-TCEEEEEESCCSHHHHHHHHTTCEEEESCCGGG----GTTCSEEEECTTS
T ss_pred             chhCCEEEEEE-ECHHHHHHHHHHHHhC-CCEEEEEeCCCChhhhHHHHCCCeEEECCcccc----CCCCCEEEECCCc
Confidence            35568899999 88999876 7888885 9999999975 3455667788986554444333    2468998877663

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.24  E-value=0.073  Score=37.38  Aligned_cols=64  Identities=25%  Similarity=0.276  Sum_probs=44.9

Q ss_pred             EEEEEcCCchHHHHHHH-HHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          153 SILVLGGAGGVGTMVIQ-LAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~-~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      +|.++| +|.+|.+.++ +++. ++.++++.++++++++.++ ++|... .+..+    + ....|+||=|+-.
T Consensus         2 kI~fIG-~G~MG~ai~~~l~~~-~~~~i~v~~r~~~~~~~l~~~~~~~~-~~~~~----~-v~~~Div~lavkP   67 (152)
T d1yqga2           2 NVYFLG-GGNMAAAVAGGLVKQ-GGYRIYIANRGAEKRERLEKELGVET-SATLP----E-LHSDDVLILAVKP   67 (152)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHH-CSCEEEEECSSHHHHHHHHHHTCCEE-ESSCC----C-CCTTSEEEECSCH
T ss_pred             EEEEEc-CcHHHHHHHHHHHHC-CCCcEEEEeCChhHHHHhhhhccccc-ccccc----c-ccccceEEEecCH
Confidence            588999 8999998777 4554 4589999999999988875 567543 32211    1 2357888877753

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.23  E-value=0.02  Score=45.41  Aligned_cols=71  Identities=24%  Similarity=0.318  Sum_probs=44.4

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEec--Ch---hhHHHHHHcCCCEEEcCCCcc---ccccCC--CccEEEECC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATS--ST---AKLDLLRSLGADLAIDYTKEN---IEDLPE--KFDVVFDAV  222 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~--~~---~~~~~~~~~g~~~v~~~~~~~---~~~~~~--~~d~vid~~  222 (255)
                      +|||+||+|-+|...+..+.. .|.+|+++++  ..   +++..++..+--..+..+-.+   +.+..+  .+|+||.++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~-~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a   80 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALS-QGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHH-CcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence            699999999999999888877 4999999873  12   223333433322333332222   222222  579999988


Q ss_pred             CC
Q 025278          223 GK  224 (255)
Q Consensus       223 G~  224 (255)
                      +.
T Consensus        81 a~   82 (338)
T d1orra_          81 GQ   82 (338)
T ss_dssp             CC
T ss_pred             cc
Confidence            73

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.22  E-value=0.031  Score=41.46  Aligned_cols=71  Identities=13%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC-CEEEcCCCccccccCCCccEEEEC
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA-DLAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      ....+ .|++||=.| +|. |.+++.+++. +..+|+.++.+++..+.+++.-. ..+++.   +..+..+.+|+||-.
T Consensus        43 ~~~dl-~Gk~VLDlG-cGt-G~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~~~~~~~~~---D~~~l~~~fD~Vi~N  114 (197)
T d1ne2a_          43 NDGNI-GGRSVIDAG-TGN-GILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVA---DVSEISGKYDTWIMN  114 (197)
T ss_dssp             HHTSS-BTSEEEEET-CTT-CHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEEC---CGGGCCCCEEEEEEC
T ss_pred             HcCCC-CCCEEEEeC-CCC-cHHHHHHHHc-CCCcccccccCHHHHHHHHHccccccEEEE---ehhhcCCcceEEEeC
Confidence            44555 589999888 554 6666666654 45679999999999988876432 233433   334445689999954

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.15  E-value=0.011  Score=45.44  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=29.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      +.|||+||++++|.+.++.+... |++|++++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~-Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAA-GHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECChH
Confidence            45799999999999988888774 999999998654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.052  Score=36.34  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=29.9

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .++|+|.| +|.+|+=+++.++.+ |.+|.++.+.+
T Consensus        21 p~~vvIiG-gG~ig~E~A~~l~~~-G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVG-AGYIGVELGGVINGL-GAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CCEEEEEC-CChhhHHHHHHhhcc-ccEEEEEeecc
Confidence            47899999 899999999999985 99999998765

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=95.09  E-value=0.016  Score=42.29  Aligned_cols=47  Identities=21%  Similarity=0.167  Sum_probs=40.0

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS  194 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~  194 (255)
                      ....+.+|.+||..| +| .|..+..+|++  |.+|+++|.+++-++.+++
T Consensus        14 ~~l~~~~~~rvLd~G-CG-~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          14 SSLNVVPGARVLVPL-CG-KSQDMSWLSGQ--GYHVVGAELSEAAVERYFT   60 (201)
T ss_dssp             HHHCCCTTCEEEETT-TC-CSHHHHHHHHH--CCEEEEEEECHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEec-Cc-CCHHHHHHHHc--CCceEeecccHHHHHHHHH
Confidence            345788999999999 54 48899999975  9999999999999998865

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.07  E-value=0.0077  Score=43.18  Aligned_cols=71  Identities=23%  Similarity=0.324  Sum_probs=45.7

Q ss_pred             CEEEEEcCCchHHH-HHHHHHHHhcCCcEEEEe-cChh--hHHHHHHcCCCEEEcCCCcccccc--CCCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGT-MVIQLAKHVFGASKVAAT-SSTA--KLDLLRSLGADLAIDYTKENIEDL--PEKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~-~a~~~a~~~~g~~vi~~~-~~~~--~~~~~~~~g~~~v~~~~~~~~~~~--~~~~d~vid~~G~  224 (255)
                      -+|.|+| +|.+|. +..++++.....+++++. ++.+  ..++++++|.....+. -+.+.+.  ..++|+||+++..
T Consensus         5 irvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~-~d~l~~~~~~~~iDiVf~ATpa   81 (157)
T d1nvmb1           5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAG-VEGLIKLPEFADIDFVFDATSA   81 (157)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSH-HHHHHHSGGGGGEEEEEECSCH
T ss_pred             cEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccc-eeeeeecccccccCEEEEcCCc
Confidence            3789999 999997 567777765456777664 4543  4567888887653221 1112111  2479999999874

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=95.04  E-value=0.044  Score=42.57  Aligned_cols=37  Identities=19%  Similarity=0.176  Sum_probs=28.7

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEEecC-hhhHHH
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAATSS-TAKLDL  191 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~-~~~~~~  191 (255)
                      +||+||++++|.+.++.+... |++|++.+++ +++.+.
T Consensus         5 AlITGas~GIG~aiA~~la~~-Ga~V~i~~~~~~~~~~~   42 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAE-GYAVCLHYHRSAAEANA   42 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHH
Confidence            588999999999988877774 9999988654 444433

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=95.03  E-value=0.041  Score=38.84  Aligned_cols=92  Identities=17%  Similarity=0.176  Sum_probs=61.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecC--hhhH-HHHHHcCCCEEEcCCCcccccc----------------
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSS--TAKL-DLLRSLGADLAIDYTKENIEDL----------------  211 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~--~~~~-~~~~~~g~~~v~~~~~~~~~~~----------------  211 (255)
                      ++|.|+|++|.+|.-+..+.+... ..+++++..+  -+++ +.+++|....++-.++......                
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~~   82 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGAD   82 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCcc
Confidence            789999999999999999999843 4678877643  3333 3457888877755443321110                


Q ss_pred             ------CCCccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          212 ------PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       212 ------~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                            ...+|+++.++.+.......+..++  .|+-+.+
T Consensus        83 ~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~--~gk~iaL  120 (150)
T d1r0ka2          83 ALVEAAMMGADWTMAAIIGCAGLKATLAAIR--KGKTVAL  120 (150)
T ss_dssp             HHHHHHTSCCSEEEECCCSGGGHHHHHHHHH--TTSEEEE
T ss_pred             chheecccccceeeeecCchhHHHHHHHHHh--cCCEEEE
Confidence                  1368999999877776666666664  3544443

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.83  E-value=0.071  Score=36.63  Aligned_cols=39  Identities=18%  Similarity=0.259  Sum_probs=32.7

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      .++.+++|+|.| +|.+|+=++..++.+ |.+|.++++.+.
T Consensus        31 ~~~~~k~v~VIG-gG~iG~E~A~~l~~~-g~~Vtvie~~~~   69 (133)
T d1q1ra2          31 QLIADNRLVVIG-GGYIGLEVAATAIKA-NMHVTLLDTAAR   69 (133)
T ss_dssp             TCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             hhccCCEEEEEC-CchHHHHHHHHHHhh-Ccceeeeeeccc
Confidence            345678999999 899999999999985 999999986543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.79  E-value=0.028  Score=43.90  Aligned_cols=73  Identities=22%  Similarity=0.438  Sum_probs=47.2

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh-----hHHH---HHHcCCCEEE-cCCC-ccccccCCCccEEEE
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA-----KLDL---LRSLGADLAI-DYTK-ENIEDLPEKFDVVFD  220 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~-----~~~~---~~~~g~~~v~-~~~~-~~~~~~~~~~d~vid  220 (255)
                      -++|||+||+|-+|...+..+... |.+|++++|++.     +.+.   .+..+++.+. |..+ ........+.+.++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            356999999999999999888774 899999987543     2222   2344554332 1211 112223457888998


Q ss_pred             CCCC
Q 025278          221 AVGK  224 (255)
Q Consensus       221 ~~G~  224 (255)
                      +.+.
T Consensus        82 ~~~~   85 (312)
T d1qyda_          82 ALAG   85 (312)
T ss_dssp             CCCC
T ss_pred             hhhh
Confidence            8764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.78  E-value=0.053  Score=36.28  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      ..++++|.| +|.+|+=+++.+..+ |.+|.++.+.+.
T Consensus        21 ~p~~v~IiG-gG~ig~E~A~~l~~~-G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIG-GGYIGIELGTAYANF-GTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             cCCeEEEEC-CCccceeeeeeeccc-ccEEEEEEecce
Confidence            347899999 899999999999985 999999987654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.025  Score=37.89  Aligned_cols=38  Identities=18%  Similarity=0.400  Sum_probs=32.5

Q ss_pred             cCCC-CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          148 FSAG-KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       148 ~~~g-~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      +.++ .+|.|+| +|.+|.+.++.|+.+ |.++++.+.+++
T Consensus         7 ~~~~~~kigIlG-gGQL~rMla~aA~~l-G~~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLG-SGELGKEVAIECQRL-GVEVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEES-CSHHHHHHHHHHHTT-TCEEEEEESSTT
T ss_pred             CCCCCCEEEEEe-CCHHHHHHHHHHHHC-CCEEEEEcCCCC
Confidence            3444 4699999 899999999999997 999999998765

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.71  E-value=0.017  Score=41.93  Aligned_cols=94  Identities=16%  Similarity=0.142  Sum_probs=56.8

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecC-hhhHHHHHHcCCCEEEcCCCcc--cc-----------ccCCCccE
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSS-TAKLDLLRSLGADLAIDYTKEN--IE-----------DLPEKFDV  217 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~-~~~~~~~~~~g~~~v~~~~~~~--~~-----------~~~~~~d~  217 (255)
                      +|.|.| .|-+|....+++......+++++ +.+ ......+.+++.+......+..  +.           +...++|+
T Consensus         3 ~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           3 AVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             EEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            689999 99999999998876445666665 333 3445566666655433222111  11           11237999


Q ss_pred             EEECCCCccceeeeeeccccCCceEEEEeec
Q 025278          218 VFDAVGKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       218 vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      |+||+|.......+...+. .+-+.++.+..
T Consensus        82 ViEcTG~f~~~~~~~~hl~-~G~K~vi~~~~  111 (171)
T d1cf2o1          82 VIDCTPEGIGAKNLKMYKE-KGIKAIFQGGE  111 (171)
T ss_dssp             EEECCSTTHHHHHHHHHHH-TTCEEEECTTS
T ss_pred             EEEccCCCCCHHHHHHHHH-cCCCEEEECCC
Confidence            9999997665555544443 33455555443

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.70  E-value=0.18  Score=31.99  Aligned_cols=67  Identities=19%  Similarity=0.258  Sum_probs=48.5

Q ss_pred             CEEEEEcCCchHHHHH-HHHHHHhcCCcEEEEecCh-hhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGTMV-IQLAKHVFGASKVAATSST-AKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a-~~~a~~~~g~~vi~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      .+|-++| -|++|+.+ +++++. .|..|...|..+ +..+.++++|.......+..++    +++|+|+=+++-
T Consensus         2 ~~ihfiG-IgG~GMs~LA~~L~~-~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i----~~~d~vV~SsAI   70 (89)
T d1j6ua1           2 MKIHFVG-IGGIGMSAVALHEFS-NGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNW----YDPDLVIKTPAV   70 (89)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHH-TTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSC----CCCSEEEECTTC
T ss_pred             cEEEEEe-ECHHHHHHHHHHHHh-CCCeEEEEeCCCChhHHHHHHCCCeEEeeeccccc----CCCCEEEEecCc
Confidence            4677888 88999864 677777 499999999765 5566789999875444333332    468999877663

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.032  Score=41.14  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      ++|.|+| +|.+|...++++.. .|.+|++.+++++.++.+
T Consensus         5 kkvaViG-aG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIG-GGLMGAGIAQVAAA-TGHTVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHH
T ss_pred             EEEEEEC-cCHHHHHHHHHHHh-CCCcEEEEECChHHHHHH
Confidence            5899999 89999998888877 499999999999866544

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.65  E-value=0.022  Score=44.79  Aligned_cols=39  Identities=28%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCc--hHHHHHHHHHHHhcCCcEEEEecChhhH
Q 025278          150 AGKSILVLGGAG--GVGTMVIQLAKHVFGASKVAATSSTAKL  189 (255)
Q Consensus       150 ~g~~VlI~ga~g--~~G~~a~~~a~~~~g~~vi~~~~~~~~~  189 (255)
                      .|+++||+||+|  ++|.+.++.+... |++|++..++++..
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~-Ga~Vvi~~~~~~~~   47 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAA-GAEILVGTWVPALN   47 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEEEHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHC-CCEEEEEeCchhhh
Confidence            689999999776  8999988888874 99999988866543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.64  E-value=0.034  Score=40.65  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      .|++|.|+| .|.+|...+++++.+ |.+|++.+++....       .....    .++.+.....|+|+-++.......
T Consensus        41 ~gk~vgIiG-~G~IG~~va~~l~~~-g~~v~~~d~~~~~~-------~~~~~----~~l~ell~~sDiv~~~~pl~~~t~  107 (181)
T d1qp8a1          41 QGEKVAVLG-LGEIGTRVGKILAAL-GAQVRGFSRTPKEG-------PWRFT----NSLEEALREARAAVCALPLNKHTR  107 (181)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHT-TCEEEEECSSCCCS-------SSCCB----SCSHHHHTTCSEEEECCCCSTTTT
T ss_pred             cCceEEEec-cccccccceeeeecc-cccccccccccccc-------ceeee----echhhhhhccchhhcccccccccc
Confidence            578999999 999999999999995 99999998865321       11111    123344456788777665221111


Q ss_pred             -----eeeeccccCCceEEEEe
Q 025278          230 -----VYQKCDKFQEKSLINFG  246 (255)
Q Consensus       230 -----~~~~~~~~~~G~~v~~G  246 (255)
                           ..+..++ ++..+|.+|
T Consensus       108 ~li~~~~l~~mk-~~ailIN~~  128 (181)
T d1qp8a1         108 GLVKYQHLALMA-EDAVFVNVG  128 (181)
T ss_dssp             TCBCHHHHTTSC-TTCEEEECS
T ss_pred             cccccceeeecc-ccceEEecc
Confidence                 1133344 456666665

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.64  E-value=0.024  Score=39.00  Aligned_cols=29  Identities=17%  Similarity=0.237  Sum_probs=24.4

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA  182 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~  182 (255)
                      +|.|+|++|-+|++..+++.. .+.+++..
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~-~~~~l~~~   30 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSE-KGHELVLK   30 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHhc-CCCeEEEE
Confidence            689999899999999998887 47777654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.055  Score=41.95  Aligned_cols=96  Identities=10%  Similarity=0.051  Sum_probs=63.3

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC-EEEcCCCccccccCCCccEEEECCCCcc
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD-LAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      ..++.+||=+| +| .|..+..+++...+.+++.+|.+++-++.+++.... ..+..+..+..-..+.+|+|+..-. ..
T Consensus        82 ~~~~~~iLDiG-cG-~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~  158 (268)
T d1p91a_          82 DDKATAVLDIG-CG-EGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-PC  158 (268)
T ss_dssp             CTTCCEEEEET-CT-TSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-CC
T ss_pred             CCCCCEEEEeC-CC-CcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCC-HH
Confidence            46778899888 44 477777888875578999999999998888764422 2222222222222356999996433 33


Q ss_pred             ceeeeeeccccCCceEEEEee
Q 025278          227 ISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       227 ~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      ....+.+.++ ++|+++....
T Consensus       159 ~~~e~~rvLk-pgG~l~~~~p  178 (268)
T d1p91a_         159 KAEELARVVK-PGGWVITATP  178 (268)
T ss_dssp             CHHHHHHHEE-EEEEEEEEEE
T ss_pred             HHHHHHHHhC-CCcEEEEEee
Confidence            3445667777 8999887754

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.61  E-value=0.082  Score=40.02  Aligned_cols=71  Identities=18%  Similarity=0.139  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH-HcCCCEEEcCCCccccccCCCccEEEECCCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR-SLGADLAIDYTKENIEDLPEKFDVVFDAVGKMC  226 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~  226 (255)
                      -.|.+|+|.| .|.+|..+++++... |+++++++.+..+.+.+. +.|+..+ +. ++   -+...+|+++=|.-+..
T Consensus        37 l~g~~v~IqG-~GnVG~~~a~~L~~~-Gakvv~~d~~~~~~~~~~~~~g~~~~-~~-~~---~~~~~cDIl~PcA~~~~  108 (230)
T d1leha1          37 LEGLAVSVQG-LGNVAKALCKKLNTE-GAKLVVTDVNKAAVSAAVAEEGADAV-AP-NA---IYGVTCDIFAPCALGAV  108 (230)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHCCEEC-CG-GG---TTTCCCSEEEECSCSCC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEeecccHHHHHHHHHhcCCccc-CC-cc---cccccccEecccccccc
Confidence            4689999999 999999999999995 999999999988887664 5676432 21 11   12236788877765443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.017  Score=35.98  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=30.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      ++|.|+| +|-+|.+.++.++.+ |.++++.+.+++
T Consensus         2 k~vgIlG-~GQLgrMl~~Aa~~L-G~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLG-NGQLGRMLRQAGEPL-GIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEB-CSHHHHHHHHHHGGG-TEEEEEECTTSC
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHc-CCEEEEEcCCCC
Confidence            4799999 899999999999997 999999987654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.57  E-value=0.15  Score=34.34  Aligned_cols=38  Identities=16%  Similarity=0.332  Sum_probs=32.4

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      ++++++++|.| +|.+|.=++..++.. |.+|.++.+++.
T Consensus        27 ~~~~~~vvIIG-gG~iG~E~A~~l~~~-g~~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVG-GGVIGLELAATARTA-GVHVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             hhcCCeEEEEC-cchhHHHHHHHhhcc-cceEEEEeeccc
Confidence            46779999999 899999999988885 999999986653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.56  E-value=0.03  Score=43.45  Aligned_cols=97  Identities=10%  Similarity=0.041  Sum_probs=61.0

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCC---CEEEcCCCccccccCCCccEEE
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGA---DLAIDYTKENIEDLPEKFDVVF  219 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~---~~v~~~~~~~~~~~~~~~d~vi  219 (255)
                      .+++|++||-.++  ++|..++.+|+. ++++|++++.+++..+.+++    .|.   -.+++.+...+.. ...+|.|+
T Consensus       104 ~~~~g~~VlD~~a--G~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii  179 (260)
T d2frna1         104 VAKPDELVVDMFA--GIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL  179 (260)
T ss_dssp             HCCTTCEEEETTC--TTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             hcCCccEEEECcc--eEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEE
Confidence            4689999998873  457777778876 56899999999998887743    342   2345544433322 23588665


Q ss_pred             -ECC-CCccceeeeeeccccCCceEEEEeec
Q 025278          220 -DAV-GKMCISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       220 -d~~-G~~~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                       +-. .+......+...++ ++|.+..+...
T Consensus       180 ~~~p~~~~~~l~~a~~~l~-~gG~lh~~~~~  209 (260)
T d2frna1         180 MGYVVRTHEFIPKALSIAK-DGAIIHYHNTV  209 (260)
T ss_dssp             ECCCSSGGGGHHHHHHHEE-EEEEEEEEEEE
T ss_pred             ECCCCchHHHHHHHHhhcC-CCCEEEEEecc
Confidence             322 23333334555665 67877666554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.45  E-value=0.053  Score=38.60  Aligned_cols=45  Identities=22%  Similarity=0.193  Sum_probs=37.2

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD  198 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~  198 (255)
                      ++|.++| .|.+|...+.-+.. .|.+|.+.++++++.+.+.+.+..
T Consensus         2 ~kIg~IG-lG~MG~~iA~~L~~-~g~~v~~~d~~~~~~~~~~~~~~~   46 (162)
T d3cuma2           2 KQIAFIG-LGHMGAPMATNLLK-AGYLLNVFDLVQSAVDGLVAAGAS   46 (162)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHTTCE
T ss_pred             CEEEEEE-EHHHHHHHHHHHHH-CCCeEEEEECchhhhhhhhhhhcc
Confidence            3688999 99999987776665 389999999999999888877754

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.034  Score=39.93  Aligned_cols=97  Identities=16%  Similarity=0.177  Sum_probs=56.4

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEe--cChhhHHHHHHc----C---CCE-------EEcCCC------ccccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAAT--SSTAKLDLLRSL----G---ADL-------AIDYTK------ENIED  210 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~--~~~~~~~~~~~~----g---~~~-------v~~~~~------~~~~~  210 (255)
                      +|.|.| -|-+|.++.+.+......+++++-  .+.+.+.++-++    |   .+.       +++...      .+..+
T Consensus         3 kigING-FGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~   81 (166)
T d1gado1           3 KVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (166)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEEC-CcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence            578999 999999999988774356666663  234445554332    2   111       111100      01111


Q ss_pred             c---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          211 L---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       211 ~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      .   ..++|+|+||+|...+...+..-+. .+-+-|++..+..+
T Consensus        82 i~W~~~gvDiViEcTG~f~t~~~~~~hl~-~gakkViiSaP~~d  124 (166)
T d1gado1          82 LKWDEVGVDVVAEATGLFLTDETARKHIT-AGAKKVVMTGPSKD  124 (166)
T ss_dssp             GCHHHHTCSEEEECSSSCCSHHHHTHHHH-TTCSEEEESSCCSS
T ss_pred             CCccccCCCEEEEccccccCHHHHHHHhc-CCCceEEeeccccc
Confidence            1   1279999999997776665544443 34555666666654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.37  E-value=0.026  Score=41.90  Aligned_cols=36  Identities=19%  Similarity=0.360  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      .|++|.|+| .|.+|...++.++.+ |.+|++.++...
T Consensus        42 ~gk~vgIiG-~G~IG~~va~~l~~f-g~~V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVG-TGHIGQVFMQIMEGF-GAKVITYDIFRN   77 (197)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             cCCeEEEec-ccccchhHHHhHhhh-cccccccCcccc
Confidence            478999999 999999999999985 999999986544

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.1  Score=41.20  Aligned_cols=72  Identities=21%  Similarity=0.223  Sum_probs=45.9

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHH---HHHHcCCC---EEEcCCCccccccCCCccEEE
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLD---LLRSLGAD---LAIDYTKENIEDLPEKFDVVF  219 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~---~~~~~g~~---~v~~~~~~~~~~~~~~~d~vi  219 (255)
                      ....+|++||-+| +| .|.++..+|++ +..+|++++.++.-..   ..++.+..   .+++.+..+.....+.+|+|+
T Consensus        31 ~~~~~~~~VLDiG-cG-~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Iv  107 (311)
T d2fyta1          31 PHIFKDKVVLDVG-CG-TGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVII  107 (311)
T ss_dssp             GGGTTTCEEEEET-CT-TSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred             cccCCcCEEEEEC-CC-CCHHHHHHHHc-CCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEE
Confidence            4567899999999 55 67888888876 4568999998875332   22333321   234443333333345799998


Q ss_pred             E
Q 025278          220 D  220 (255)
Q Consensus       220 d  220 (255)
                      -
T Consensus       108 s  108 (311)
T d2fyta1         108 S  108 (311)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=94.26  E-value=0.039  Score=40.65  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK  188 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~  188 (255)
                      .|+++.|+| .|.+|...+++++.. |.+++..++....
T Consensus        46 ~g~tvgIiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~   82 (191)
T d1gdha1          46 DNKTLGIYG-FGSIGQALAKRAQGF-DMDIDYFDTHRAS   82 (191)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECSSCCC
T ss_pred             cccceEEee-cccchHHHHHHHHhh-ccccccccccccc
Confidence            379999999 999999999999985 9999999875543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.24  E-value=0.062  Score=39.35  Aligned_cols=44  Identities=11%  Similarity=0.108  Sum_probs=35.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL  195 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~  195 (255)
                      .+.++.|.| .|.+|...++.++.+ +.+|+..++........+..
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~~~~~~~~   86 (188)
T d2naca1          43 EAMHVGTVA-AGRIGLAVLRRLAPF-DVHLHYTDRHRLPESVEKEL   86 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGG-TCEEEEECSSCCCHHHHHHH
T ss_pred             cccceeecc-ccccchhhhhhhhcc-CceEEEEeeccccccccccc
Confidence            578999999 999999999999985 99999999765444444333

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.17  E-value=0.018  Score=46.61  Aligned_cols=74  Identities=20%  Similarity=0.184  Sum_probs=46.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEE--cCCCc-cccccCCCccEEEECCCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAI--DYTKE-NIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~--~~~~~-~~~~~~~~~d~vid~~G~  224 (255)
                      ....+|||+||+|-+|...+..+.. .|.+|+++++...+... .........  |..+. .+....+++|.||.+++.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~-~g~~V~~~d~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~   89 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKH-EGHYVIASDWKKNEHMT-EDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD   89 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCSSSC-GGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEeCCCccchh-hhcccCcEEEeechhHHHHHHHhhcCCeEeecccc
Confidence            3578999999999999999998888 49999999764332111 111111222  22111 122224589999998763

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.15  E-value=0.11  Score=37.98  Aligned_cols=95  Identities=20%  Similarity=0.248  Sum_probs=58.2

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE--EEcCCCccccccCCCccEEEEC
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL--AIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~--v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      +++| +||=+| +| .|..+..+++.  |.+|++++.+++-++.++    +.+.+.  +...+-... ...+.+|+|+..
T Consensus        29 ~~~g-rvLDiG-cG-~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~I~~~  102 (198)
T d2i6ga1          29 VAPG-RTLDLG-CG-NGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL-TFDGEYDFILST  102 (198)
T ss_dssp             SCSC-EEEEET-CT-TSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC-CCCCCEEEEEEE
T ss_pred             CCCC-cEEEEC-CC-CCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccc-cccccccEEEEe
Confidence            3444 899998 65 79998888874  899999999998877664    344432  111111111 123579999953


Q ss_pred             CC-----Cc---cceeeeeeccccCCceEEEEeecc
Q 025278          222 VG-----KM---CISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       222 ~G-----~~---~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      .-     ..   .....+.++++ ++|++++.-...
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~L~-pgG~~~~~~~~~  137 (198)
T d2i6ga1         103 VVMMFLEAQTIPGLIANMQRCTK-PGGYNLIVAAMD  137 (198)
T ss_dssp             SCGGGSCTTHHHHHHHHHHHTEE-EEEEEEEEEEBC
T ss_pred             eeeecCCHHHHHHHHHHHHHHcC-CCcEEEEEEecC
Confidence            22     11   12223344566 789988876543

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.067  Score=41.86  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=40.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE---ecChhhHHH----HHHc---CCCE-E--EcCCCccc-----ccc-CC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA---TSSTAKLDL----LRSL---GADL-A--IDYTKENI-----EDL-PE  213 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~---~~~~~~~~~----~~~~---g~~~-v--~~~~~~~~-----~~~-~~  213 (255)
                      .|||+||++++|.+.+..+.. .|++++.+   .++.++.+.    ++++   +... .  .|..+.+.     .+. .+
T Consensus         4 VvlITGassGIG~a~A~~la~-~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g   82 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLAS-DPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG   82 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHT-CTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred             EEEEccCCCHHHHHHHHHHHH-CCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcccc
Confidence            468899999999998877776 48876544   344333322    2333   2222 2  23322211     011 24


Q ss_pred             CccEEEECCC
Q 025278          214 KFDVVFDAVG  223 (255)
Q Consensus       214 ~~d~vid~~G  223 (255)
                      .+|+++++.|
T Consensus        83 ~idilvnnag   92 (285)
T d1jtva_          83 RVDVLVCNAG   92 (285)
T ss_dssp             CCSEEEECCC
T ss_pred             chhhhhhccc
Confidence            6999999988

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=94.11  E-value=0.065  Score=38.74  Aligned_cols=96  Identities=14%  Similarity=0.106  Sum_probs=54.3

Q ss_pred             EEEEEcCCchHHHHHHHHHHHh---cCCcEEEEe--cChhhHHHHHHcC-------CCE-------EEcCC------Ccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHV---FGASKVAAT--SSTAKLDLLRSLG-------ADL-------AIDYT------KEN  207 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~---~g~~vi~~~--~~~~~~~~~~~~g-------~~~-------v~~~~------~~~  207 (255)
                      +|.|.| -|-+|.+..+.+...   ...+++++-  .+.+.+..+-++.       ...       +++..      ..+
T Consensus         3 kigING-fGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAING-YGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEEC-CcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            588999 999999988876542   134555553  3444555554322       111       11110      011


Q ss_pred             ccc--c-CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          208 IED--L-PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       208 ~~~--~-~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      ..+  + ..++|+|+||+|.......+..-+. .+-+-|++..+.+
T Consensus        82 p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~-~GakkViiSAP~~  126 (173)
T d1obfo1          82 PAQLPWGALKVDVVLECTGFFTTKEKAGAHIK-GGAKKVIISAPGG  126 (173)
T ss_dssp             GGGSCTTTTTCSEEEECSSSCCSHHHHHHHHH-HTCSEEEESSCCC
T ss_pred             HHHCcccccccceEEEecccccCHHHHHHHhc-cCCcceEEecCCC
Confidence            111  1 2389999999997666555554444 3556667776654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.13  Score=36.65  Aligned_cols=59  Identities=20%  Similarity=0.144  Sum_probs=42.6

Q ss_pred             hccchhHHHHHHHHHhcc-cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH
Q 025278          130 ASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL  189 (255)
Q Consensus       130 a~l~~~~~ta~~~l~~~~-~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~  189 (255)
                      ..+|++....+..++.-+ .-.|++|+|.|.+..+|.-.+.++.. .+++|+........+
T Consensus        15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~-~gatVt~~h~~t~~l   74 (166)
T d1b0aa1          15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLL-AGCTTTVTHRFTKNL   74 (166)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHT-TTCEEEEECSSCSCH
T ss_pred             CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHH-hhccccccccccchh
Confidence            345666555566665433 35799999999888999998888887 499988876544433

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.27  Score=35.18  Aligned_cols=71  Identities=23%  Similarity=0.246  Sum_probs=49.1

Q ss_pred             hccchhHHHHHHHHHhccc-CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEc
Q 025278          130 ASLPLATETAYEGLERSAF-SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       130 a~l~~~~~ta~~~l~~~~~-~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~  202 (255)
                      +.+|++....+..++..++ -.|++|+|.|.+.-+|.-.+.++.. .+++|..+......+... -..+|.++.
T Consensus        17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~-~gatVt~~~~~t~~l~~~-~~~aDivi~   88 (170)
T d1a4ia1          17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLW-NNATVTTCHSKTAHLDEE-VNKGDILVV   88 (170)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHH-TTCEEEEECTTCSSHHHH-HTTCSEEEE
T ss_pred             CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHh-ccCceEEEecccccHHHH-Hhhccchhh
Confidence            4556666666666665443 4789999999899999998888888 499999887655444322 123555543

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.97  E-value=0.032  Score=44.76  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK  188 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~  188 (255)
                      .+++|||+||+|-+|...++.+... |.+|++++++..+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~-g~~V~~~~r~~~~   44 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPT   44 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCc
Confidence            5789999999999999999999885 9999999986543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.93  E-value=0.18  Score=37.15  Aligned_cols=94  Identities=16%  Similarity=0.078  Sum_probs=60.1

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCC-CEEEcCCCccccccCCCccEEEEC
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGA-DLAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      .++++.+||=+| +|. |..+..+++.  +.+++++|.+++-++.+++    .+. ...+..+..+.....+.+|+|+-.
T Consensus        34 ~l~~~~~ILDiG-cG~-G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~  109 (226)
T d1ve3a1          34 YMKKRGKVLDLA-CGV-GGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFI  109 (226)
T ss_dssp             SCCSCCEEEEET-CTT-SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             hcCCCCEEEEEC-CCc-chhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEe
Confidence            457888999999 555 8888888874  8899999999998877754    332 222333333332223579999865


Q ss_pred             CCCc-----c---ceeeeeeccccCCceEEEE
Q 025278          222 VGKM-----C---ISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       222 ~G~~-----~---~~~~~~~~~~~~~G~~v~~  245 (255)
                      -.-.     +   ....+.+.++ ++|++++.
T Consensus       110 ~~l~~~~~~d~~~~l~~i~~~Lk-pgG~lii~  140 (226)
T d1ve3a1         110 DSIVHFEPLELNQVFKEVRRVLK-PSGKFIMY  140 (226)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             cchhhCChhHHHHHHHHHHHHcC-cCcEEEEE
Confidence            4311     1   1223455566 78987754

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.92  E-value=0.53  Score=37.17  Aligned_cols=96  Identities=10%  Similarity=0.096  Sum_probs=64.3

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHHH----HHcCCCEEEcCCCccccccCCCccEEEEC
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDLL----RSLGADLAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      ..+..+++.|+| +|..+...++.+...+.. ++.+..+++++.+.+    +..+.....+.     .+...+.|+|+-|
T Consensus       121 a~~~~~~l~iiG-aG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~-----~~a~~~aDiV~ta  194 (320)
T d1omoa_         121 ARKNSSVFGFIG-CGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP-----AEEASRCDVLVTT  194 (320)
T ss_dssp             SCTTCCEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC-----HHHHTSSSEEEEC
T ss_pred             ccCCccEEEEec-CcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch-----hhhhccccEEEEe
Confidence            334557899999 999999888877776554 666778888876554    34454443322     1223578999999


Q ss_pred             CCCccceeeeeeccccCCceEEEEeeccC
Q 025278          222 VGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       222 ~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +.+..-... ...++ ++-.+..+|.+..
T Consensus       195 T~s~~P~~~-~~~l~-~G~hv~~iGs~~p  221 (320)
T d1omoa_         195 TPSRKPVVK-AEWVE-EGTHINAIGADGP  221 (320)
T ss_dssp             CCCSSCCBC-GGGCC-TTCEEEECSCCST
T ss_pred             ccCcccccc-hhhcC-CCCeEeecCCccc
Confidence            886554333 34555 6778888887654

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=93.90  E-value=0.075  Score=38.30  Aligned_cols=98  Identities=16%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEe--cChhhHHHHHHcC-------CCEE-------EcC------CCccccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAAT--SSTAKLDLLRSLG-------ADLA-------IDY------TKENIED  210 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~--~~~~~~~~~~~~g-------~~~v-------~~~------~~~~~~~  210 (255)
                      +|.|.| -|-+|.++...+..-...+++++-  .+.+.+.++-++.       .+.-       ++.      ...+..+
T Consensus         3 kIgING-fGRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~   81 (171)
T d3cmco1           3 KVGING-FGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (171)
T ss_dssp             EEEEES-CSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEEC-CCHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence            578998 999999998887653346666662  2444555543321       1111       111      0011111


Q ss_pred             c---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCCC
Q 025278          211 L---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQEV  252 (255)
Q Consensus       211 ~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~~  252 (255)
                      .   ..++|+|+||+|...+...+..-+. .+-+-|++..+.++.
T Consensus        82 i~W~~~~vDiViEcTG~f~t~~~~~~hl~-~gakkViiSap~~d~  125 (171)
T d3cmco1          82 LAWGEIGVDIVVESTGRFTKREDAAKHLE-AGAKKVIISAPAKNE  125 (171)
T ss_dssp             CCTGGGTCCEEEECSSSCCBHHHHTHHHH-TTCSEEEESSCCBSC
T ss_pred             ccccccCCcEEEEecCccCCHHHHHHHHh-CCCceEEEecccccc
Confidence            1   1279999999997766666544444 344556666665443

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=93.89  E-value=0.04  Score=40.68  Aligned_cols=36  Identities=25%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      .|++|.|+| .|.+|...++.++.+ |.+|++.++...
T Consensus        48 ~gktvgIiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~   83 (193)
T d1mx3a1          48 RGETLGIIG-LGRVGQAVALRAKAF-GFNVLFYDPYLS   83 (193)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECTTSC
T ss_pred             eCceEEEec-cccccccceeeeecc-ccceeeccCccc
Confidence            578999999 999999999999985 999999987543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.88  E-value=0.029  Score=40.82  Aligned_cols=36  Identities=17%  Similarity=0.176  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTA  187 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~  187 (255)
                      .+++|+|+| +|+.|+.++..++.. |. .|.++++++.
T Consensus         3 ~~~kVaIIG-aGpaGl~aA~~l~~~-G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLG-AGPASISCASFLARL-GYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEEC-CSHHHHHHHHHHHHT-TCCCEEEEESSSS
T ss_pred             CCCEEEEEC-ChHHHHHHHHHHHHC-CCCeEEEEEecCc
Confidence            367899999 899999999999885 87 4888887654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.86  E-value=0.03  Score=43.22  Aligned_cols=34  Identities=24%  Similarity=0.230  Sum_probs=29.7

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      +++|+|+| +|..|+.++..++.. |.+|.+++.++
T Consensus         1 ~KkV~IIG-aG~aGL~aA~~La~~-G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIG-AGVSGLAAAYKLKIH-GLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTT-SCEEEEECSSS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            57899999 899999999988884 99999998654

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.85  E-value=0.098  Score=37.56  Aligned_cols=97  Identities=14%  Similarity=0.112  Sum_probs=56.8

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhc--CCcEEEEe--cChhhHHHHHHc----C---CCEEE-------cCCC------ccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVF--GASKVAAT--SSTAKLDLLRSL----G---ADLAI-------DYTK------ENI  208 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~--g~~vi~~~--~~~~~~~~~~~~----g---~~~v~-------~~~~------~~~  208 (255)
                      +|.|.| -|-+|.++.+.+....  ..+++++-  .+.+.+.++-++    |   .+.-+       +...      .+.
T Consensus         2 kIgING-fGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAING-FGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEEC-CChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            688999 9999999998776522  36777662  245556655443    2   11111       1100      011


Q ss_pred             ccc---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccCC
Q 025278          209 EDL---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQE  251 (255)
Q Consensus       209 ~~~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~~  251 (255)
                      .+.   ..++|+||||+|...+...+..-+. .+-+-|++..+.++
T Consensus        81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~-~GakkViiSAP~kd  125 (169)
T d1hdgo1          81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQ-AGAKKVIITAPAKG  125 (169)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHH-TTCSEEEESSCCBS
T ss_pred             hhCCccccCCCEEEEecceeccccchhhhcc-CCCceEEEecccCC
Confidence            111   1279999999998776666655554 34455666666654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.81  E-value=0.073  Score=40.35  Aligned_cols=95  Identities=18%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC-EEEcCCCccccccCCCccEE
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD-LAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~~d~v  218 (255)
                      .....++.++||=.| +|. |..+..+++.  +.++++++.+++-++.+++    .+.. .++..+-.++. ..+.+|+|
T Consensus        35 ~~~~~~~~~~iLDiG-cGt-G~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~-~~~~fD~I  109 (251)
T d1wzna1          35 KEDAKREVRRVLDLA-CGT-GIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FKNEFDAV  109 (251)
T ss_dssp             HHTCSSCCCEEEEET-CTT-CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CCSCEEEE
T ss_pred             HHhcCCCCCEEEEeC-CCC-Cccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhcc-cccccchH
Confidence            345667788999998 665 8888888875  7899999999987777754    2322 23333333332 23579998


Q ss_pred             EECCCCc---------cceeeeeeccccCCceEEE
Q 025278          219 FDAVGKM---------CISIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       219 id~~G~~---------~~~~~~~~~~~~~~G~~v~  244 (255)
                      +-.-+.-         .....+.+.++ ++|++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~L~~~~~~Lk-pgG~lii  143 (251)
T d1wzna1         110 TMFFSTIMYFDEEDLRKLFSKVAEALK-PGGVFIT  143 (251)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHcC-CCcEEEE
Confidence            8653321         12223455666 7888765

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.031  Score=44.62  Aligned_cols=72  Identities=14%  Similarity=0.097  Sum_probs=44.7

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH-cCCCEEEcCC--C-ccccc-cCCCccEEEECCCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS-LGADLAIDYT--K-ENIED-LPEKFDVVFDAVGK  224 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~-~g~~~v~~~~--~-~~~~~-~~~~~d~vid~~G~  224 (255)
                      .+|||+||+|-+|...++.+...+..+|+++++...+.....+ -+... +..+  + ..+.+ ..+++|+||.+++-
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~-i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHF-VEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEE-EECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEE-EECccCChHHHHHHHHhCCCcccccccc
Confidence            3699999999999998877766433688888876554443322 22222 2221  1 12221 23479999998874

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.74  E-value=0.073  Score=38.19  Aligned_cols=96  Identities=16%  Similarity=0.149  Sum_probs=57.1

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ec--ChhhHHHHHHcC-------CCEE-------EcCC------Ccccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA-TS--STAKLDLLRSLG-------ADLA-------IDYT------KENIE  209 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~--~~~~~~~~~~~g-------~~~v-------~~~~------~~~~~  209 (255)
                      +|.|.| -|-+|.++.+.+......+++++ +.  +.+.+.++-++.       .+..       ++..      ..+..
T Consensus         2 kigING-fGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~   80 (166)
T d2b4ro1           2 KLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS   80 (166)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred             eEEEEC-CCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence            578998 99999999998876445666666 32  445666664432       1111       1110      01111


Q ss_pred             cc---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          210 DL---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       210 ~~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      +.   ..++|+|+||+|.......+..-+. .+-+-|++..+.+
T Consensus        81 ~i~W~~~gvdiViEcTG~f~~~~~~~~hl~-~gakkViiSAP~k  123 (166)
T d2b4ro1          81 QIPWGKCQVDVVCESTGVFLTKELASSHLK-GGAKKVIMSAPPK  123 (166)
T ss_dssp             GCCHHHHTCSEEEECSSSCCSHHHHTHHHH-TTCSEEEESSCCS
T ss_pred             HccccccCCCEEEEecccccchhhhhhhhc-cCCCEEEEecccc
Confidence            11   1289999999997766555554444 3556666666654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.0067  Score=43.44  Aligned_cols=75  Identities=16%  Similarity=0.155  Sum_probs=43.6

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC--EEEcCCCccccccCCCccEEEECCCCccce
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD--LAIDYTKENIEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~d~vid~~G~~~~~  228 (255)
                      .+|+|+| +|.+|.+.+..+... |.+|..+++++++.+..+..+.+  ........+..+..+.+|++|-++-.....
T Consensus         1 MkI~IiG-aG~iG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~   77 (167)
T d1ks9a2           1 MKITVLG-CGALGQLWLTALCKQ-GHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVS   77 (167)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHHC-CCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchH
Confidence            3689999 799999877777664 99999999987654432222211  000000000011123678888777755433

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.72  E-value=0.17  Score=33.82  Aligned_cols=44  Identities=18%  Similarity=0.214  Sum_probs=34.0

Q ss_pred             HHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          139 AYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       139 a~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .+.+++..  +..++++|+| +|.+|+=.+++++.+ |.+|.++.+++
T Consensus        12 s~~~l~l~--~~p~~i~IiG-~G~ig~E~A~~l~~~-G~~Vtiv~~~~   55 (119)
T d3lada2          12 STGALDFQ--NVPGKLGVIG-AGVIGLELGSVWARL-GAEVTVLEAMD   55 (119)
T ss_dssp             HHHHTSCS--SCCSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             hhHhhCcc--cCCCeEEEEC-CChHHHHHHHHHHHc-CCceEEEEeec
Confidence            44454332  3448899999 899999999999986 99999998654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.12  Score=34.90  Aligned_cols=73  Identities=11%  Similarity=0.170  Sum_probs=46.5

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh--------hH----HHHHHcCCCEEEcCCCccccccCCC--cc
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA--------KL----DLLRSLGADLAIDYTKENIEDLPEK--FD  216 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~--------~~----~~~~~~g~~~v~~~~~~~~~~~~~~--~d  216 (255)
                      .++++|.| +|.+|+=++..++++ |.+|.++.+++.        -.    +.+++.|.+...+..-..+....++  ++
T Consensus        22 pk~vvIvG-gG~iG~E~A~~l~~~-G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~   99 (125)
T d3grsa2          22 PGRSVIVG-AGYIAVEMAGILSAL-GSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVS   99 (125)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEc-CCccHHHHHHHHhcC-CcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEE
Confidence            37899999 899999999999986 999999987642        11    2235667665444322222222222  45


Q ss_pred             EEEECCCCc
Q 025278          217 VVFDAVGKM  225 (255)
Q Consensus       217 ~vid~~G~~  225 (255)
                      .+..+.|..
T Consensus       100 ~~~~~~g~~  108 (125)
T d3grsa2         100 MVTAVPGRL  108 (125)
T ss_dssp             EEECCTTSC
T ss_pred             EEEccCCcC
Confidence            666666643

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.68  E-value=0.052  Score=39.69  Aligned_cols=38  Identities=32%  Similarity=0.391  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL  189 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~  189 (255)
                      .|+++.|.| .|.+|...++.++.. |.+|++.++...+.
T Consensus        43 ~~k~vgiiG-~G~IG~~va~~~~~f-g~~v~~~d~~~~~~   80 (184)
T d1ygya1          43 FGKTVGVVG-LGRIGQLVAQRIAAF-GAYVVAYDPYVSPA   80 (184)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECTTSCHH
T ss_pred             cceeeeecc-ccchhHHHHHHhhhc-cceEEeecCCCChh
Confidence            578999999 999999999999985 99999998765443

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.64  E-value=0.042  Score=44.04  Aligned_cols=72  Identities=26%  Similarity=0.297  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHH--HHHHc-CCCEEEcCCCcc----ccccCCCccEEEECC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLD--LLRSL-GADLAIDYTKEN----IEDLPEKFDVVFDAV  222 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~--~~~~~-g~~~v~~~~~~~----~~~~~~~~d~vid~~  222 (255)
                      ..++|+|+||+|.+|...+..+... |.+|++++|+.++..  .+... |++. +..+-.+    +....++.|+++...
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~-G~~V~~l~R~~~~~~~~~~~~~~~v~~-~~gD~~d~~~~~~~a~~~~~~~~~~~   79 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAV-GHHVRAQVHSLKGLIAEELQAIPNVTL-FQGPLLNNVPLMDTLFEGAHLAFINT   79 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCSCSHHHHHHHTSTTEEE-EESCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhC-CCeEEEEECCcchhhhhhhcccCCCEE-EEeeCCCcHHHHHHHhcCCceEEeec
Confidence            4578999999999999999998884 999999998766543  22333 4433 3222111    222345788887654


Q ss_pred             C
Q 025278          223 G  223 (255)
Q Consensus       223 G  223 (255)
                      .
T Consensus        80 ~   80 (350)
T d1xgka_          80 T   80 (350)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.55  E-value=0.05  Score=39.82  Aligned_cols=39  Identities=21%  Similarity=0.194  Sum_probs=32.5

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL  192 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~  192 (255)
                      ++|.|+| +|.+|...++++.. .|.+|++.+++++.++.+
T Consensus         5 ~~vaViG-aG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLG-AGIMGGGIAYQSAS-KGTPILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEEC-CHHHHHHHHHHHHH-TTCCEEEECSSHHHHHHH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHh-CCCeEEEEECCHHHHhhh
Confidence            5799999 89999987777766 499999999998876644

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.54  E-value=0.14  Score=34.72  Aligned_cols=36  Identities=14%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      +..++++|.| +|.+|+=.+++.+.+ |.+|.++.+.+
T Consensus        24 ~~p~~vvIiG-gG~IG~E~A~~~~~~-G~~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIG-GGIIGLEMGTVYSTL-GSRLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEES-CSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             ccCCeEEEEC-CCHHHHHHHHHhhcC-CCEEEEEEeec
Confidence            3458999999 899999999999986 99999997654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.51  E-value=0.044  Score=41.70  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      ..++|+|+| +|..|++++..++.. |.+|+++++++
T Consensus         3 ~~~kV~IiG-aG~aGl~~A~~L~~~-G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVG-GSISGLTAALMLRDA-GVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CCCcEEEEC-cCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            357899999 899999999888884 99999998754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.51  E-value=0.06  Score=42.94  Aligned_cols=71  Identities=18%  Similarity=0.324  Sum_probs=44.8

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec----ChhhHHHHHHc---CCCEEEcCCCcc---cccc--CCCccEEE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATS----STAKLDLLRSL---GADLAIDYTKEN---IEDL--PEKFDVVF  219 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~----~~~~~~~~~~~---g~~~v~~~~~~~---~~~~--~~~~d~vi  219 (255)
                      .+|||+||+|-+|...+..+... |.+|+++++    ..+.....+.+   +... +..+-.+   +.+.  ..++|+||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~d~~~l~~~~~~~~~d~Vi   78 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF-VEGDIRNEALMTEILHDHAIDTVI   78 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTTHHHHHHHHHTSCCEE-EECCTTCHHHHHHHHHHTTCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCCCcchhhHHHHHhhcCCCCEE-EEeecCCHHHHHHHHhccCCCEEE
Confidence            36999999999999999988884 899999875    22223333222   2332 2222122   2222  23799999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .+++.
T Consensus        79 HlAa~   83 (338)
T d1udca_          79 HFAGL   83 (338)
T ss_dssp             ECCSC
T ss_pred             ECCCc
Confidence            98763

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=93.46  E-value=0.079  Score=38.22  Aligned_cols=100  Identities=15%  Similarity=0.134  Sum_probs=54.2

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcC--CcEEEE-ec-ChhhHHHHHHc----C---CCEEEcCCCc--------------c
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFG--ASKVAA-TS-STAKLDLLRSL----G---ADLAIDYTKE--------------N  207 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g--~~vi~~-~~-~~~~~~~~~~~----g---~~~v~~~~~~--------------~  207 (255)
                      +|.|.| -|-+|.++.+.+.....  .+++++ +. +.+.+.++-++    |   .+.....+..              +
T Consensus         2 kIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~   80 (172)
T d1rm4a1           2 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN   80 (172)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCC
Confidence            588999 99999999987665323  455555 22 33445544332    2   1111111100              0


Q ss_pred             cccc---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC-CCCC
Q 025278          208 IEDL---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ-EVPK  254 (255)
Q Consensus       208 ~~~~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~-~~~~  254 (255)
                      ..+.   ..++|+|+||+|.......+..-+. .+-+-|++..+.+ +.++
T Consensus        81 p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~-~GakkViiSAP~k~~~~t  130 (172)
T d1rm4a1          81 PVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQ-AGAKKVLITAPGKGDIPT  130 (172)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHHHHHH-TTCSCEEESSCCBSSCCB
T ss_pred             hHHCChhhcCCCEEEecCceEccHHHHHHHHh-cCCceEEeecccccceee
Confidence            0110   1279999999997666555544443 3444566666554 3443

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.38  E-value=0.14  Score=34.46  Aligned_cols=71  Identities=13%  Similarity=0.220  Sum_probs=46.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh------------HHHHHHcCCCEEEcCCCccccccCCCcc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK------------LDLLRSLGADLAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~------------~~~~~~~g~~~v~~~~~~~~~~~~~~~d  216 (255)
                      +..++++|+| +|.+|+=.+++.+.+ |.+|.++.+++.-            .+.+++.|.+...+..-..+....+++.
T Consensus        23 ~~p~~~viiG-~G~iglE~A~~~~~~-G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~  100 (123)
T d1dxla2          23 EIPKKLVVIG-AGYIGLEMGSVWGRI-GSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVK  100 (123)
T ss_dssp             SCCSEEEESC-CSHHHHHHHHHHHHH-TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEE
T ss_pred             ccCCeEEEEc-cchHHHHHHHHHHhc-CCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEE
Confidence            3457999999 899999999999996 9999999876542            1234566766554433222322234555


Q ss_pred             EEEEC
Q 025278          217 VVFDA  221 (255)
Q Consensus       217 ~vid~  221 (255)
                      +.+..
T Consensus       101 v~~~~  105 (123)
T d1dxla2         101 LTVEP  105 (123)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            54443

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.34  E-value=0.026  Score=39.87  Aligned_cols=39  Identities=15%  Similarity=0.210  Sum_probs=30.3

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR  193 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~  193 (255)
                      +|.|+| .|.+|...+.-++. .|.++++.++++++....+
T Consensus         2 kIgiIG-~G~mG~~ia~~l~~-~g~~v~~~~~~~~~~~~~~   40 (152)
T d1i36a2           2 RVGFIG-FGEVAQTLASRLRS-RGVEVVTSLEGRSPSTIER   40 (152)
T ss_dssp             EEEEES-CSHHHHHHHHHHHH-TTCEEEECCTTCCHHHHHH
T ss_pred             EEEEEc-HHHHHHHHHHHHHH-CCCeEEEEcCchhHHHHHh
Confidence            588899 99999998888887 4888888877665554443

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=93.31  E-value=0.37  Score=37.38  Aligned_cols=57  Identities=19%  Similarity=0.311  Sum_probs=43.8

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec---ChhhHHHHHHcCCCEEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS---STAKLDLLRSLGADLAI  201 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~---~~~~~~~~~~~g~~~v~  201 (255)
                      .+....+++++|+... +|..|++++..++.+ |.+.+++..   ++.|.+..+.+|++.++
T Consensus        52 ~~~g~~~~~~~vv~aS-sGN~g~a~A~~a~~~-G~~~~i~~p~~~~~~k~~~~~~~GA~v~~  111 (292)
T d2bhsa1          52 EKRGEIKPGDVLIEAT-SGNTGIALAMIAALK-GYRMKLLMPDNMSQERRAAMRAYGAELIL  111 (292)
T ss_dssp             HHTTSCCTTSEEEEEC-CSHHHHHHHHHHHHH-TCEEEEEEESCCCHHHHHHHHHTTCEEEE
T ss_pred             HHhCCcCCCceeeeec-ccchhHHHHHHHHhc-CcceEeeeccCchhhhhHHHHHhCCCcce
Confidence            3455566677665554 999999999999996 888887753   77788888999997654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.13  E-value=0.22  Score=34.75  Aligned_cols=74  Identities=19%  Similarity=0.127  Sum_probs=46.3

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHH-HHHc-------CCCEEEcCCCccccccCCCccEEE
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDL-LRSL-------GADLAIDYTKENIEDLPEKFDVVF  219 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~-~~~~-------g~~~v~~~~~~~~~~~~~~~d~vi  219 (255)
                      ..+.+|.|+| +|.+|..++..+...+ .-+++.+|.++++.+- +.++       +....+.  ..+. +...+.|+|+
T Consensus         4 ~~~~KI~IiG-aG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~d~-~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIG-AGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGDY-DDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECCG-GGTTTCSEEE
T ss_pred             CCCCeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEE--ECCH-HHhccceeEE
Confidence            4567899999 6999998887777642 2368888988877432 1121       1111111  1222 2346899999


Q ss_pred             ECCCCcc
Q 025278          220 DAVGKMC  226 (255)
Q Consensus       220 d~~G~~~  226 (255)
                      -++|.+.
T Consensus        80 itag~~~   86 (148)
T d1ldna1          80 ICAGANQ   86 (148)
T ss_dssp             ECCSCCC
T ss_pred             Eeccccc
Confidence            9998543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.13  E-value=0.069  Score=37.58  Aligned_cols=65  Identities=20%  Similarity=0.288  Sum_probs=46.0

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEEcCCCccccccCCCccEEEECCCC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      ++.++| +|.+|.+.+.-... .+.++++.+++.++.+.+ +++|...+-     +..+..+..|+||=|+-.
T Consensus         2 kIg~IG-~G~mG~al~~~l~~-~~~~i~v~~r~~~~~~~l~~~~g~~~~~-----~~~~~~~~~dvIilavkp   67 (152)
T d2ahra2           2 KIGIIG-VGKMASAIIKGLKQ-TPHELIISGSSLERSKEIAEQLALPYAM-----SHQDLIDQVDLVILGIKP   67 (152)
T ss_dssp             EEEEEC-CSHHHHHHHHHHTT-SSCEEEEECSSHHHHHHHHHHHTCCBCS-----SHHHHHHTCSEEEECSCG
T ss_pred             EEEEEe-ccHHHHHHHHHHHh-CCCeEEEEcChHHhHHhhccccceeeec-----hhhhhhhccceeeeecch
Confidence            578899 99999987775555 388999999999887776 567754321     222233467888877753

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=93.12  E-value=0.47  Score=35.91  Aligned_cols=34  Identities=26%  Similarity=0.477  Sum_probs=30.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS  184 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~  184 (255)
                      -.|.+|+|.| .|.+|..+++++... |+++++++.
T Consensus        29 l~g~~v~IqG-fGnVG~~~a~~L~~~-Gakvv~vsD   62 (242)
T d1v9la1          29 IEGKTVAIQG-MGNVGRWTAYWLEKM-GAKVIAVSD   62 (242)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEEEC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEeec
Confidence            4789999999 999999999999996 999997763

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.11  E-value=0.051  Score=41.78  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=29.6

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .+|||+||+|-+|...+..++. .|.+|+++++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~-~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKG-KNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTT-SSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CCCEEEEeechh
Confidence            4699999999999999999887 499999998754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.10  E-value=0.14  Score=35.75  Aligned_cols=73  Identities=15%  Similarity=0.144  Sum_probs=52.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCcccc--------ccCCCccEEEECCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIE--------DLPEKFDVVFDAVG  223 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~--------~~~~~~d~vid~~G  223 (255)
                      ++|.|+|+.|.+|...+..++.. |..|.+.++++++.......+++.++........        .....=.+++|+++
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~-G~~V~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S   88 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRAS-GYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLTS   88 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHc-CCCcEecccccccccchhhhhccccccccchhhheeeeecccccccCCceEEEecc
Confidence            57999998899999999988884 9999999998877666666677777665443211        11122357888877


Q ss_pred             Cc
Q 025278          224 KM  225 (255)
Q Consensus       224 ~~  225 (255)
                      ..
T Consensus        89 vk   90 (152)
T d2pv7a2          89 VK   90 (152)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.094  Score=36.91  Aligned_cols=92  Identities=15%  Similarity=0.176  Sum_probs=61.0

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEec--ChhhH-HHHHHcCCCEEEcCCCccccc-----------------
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVF-GASKVAATS--STAKL-DLLRSLGADLAIDYTKENIED-----------------  210 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~--~~~~~-~~~~~~g~~~v~~~~~~~~~~-----------------  210 (255)
                      ++|.|+|++|.+|.-+..+.+... ..+++++..  +-+++ +.+++|....++-.++....+                 
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g   81 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG   81 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence            368999999999999999999843 367777754  33343 334678877765543321110                 


Q ss_pred             --------cCCCccEEEECCCCccceeeeeeccccCCceEEEE
Q 025278          211 --------LPEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       211 --------~~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~  245 (255)
                              ....+|+|+.+..+.......+..++  .|+-+.+
T Consensus        82 ~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik--~gk~iaL  122 (151)
T d1q0qa2          82 QQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIR--AGKTILL  122 (151)
T ss_dssp             HHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHH--TTCEEEE
T ss_pred             hHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHh--cCCeEEE
Confidence                    02368999999888777766666664  3554443

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.077  Score=42.70  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=28.8

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      +.|||+||+|-+|...+..+... |.+|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~-g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-cCEEEEEECCC
Confidence            57899999999999988888884 99999999743

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.90  E-value=0.024  Score=42.08  Aligned_cols=65  Identities=17%  Similarity=0.251  Sum_probs=39.7

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCC--cEEEEecChhhHHHHHHcCCCEEEcCCCcc----ccccCCCccEEEECCCCc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGA--SKVAATSSTAKLDLLRSLGADLAIDYTKEN----IEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~--~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~----~~~~~~~~d~vid~~G~~  225 (255)
                      ++|||+||+|-+|...+..+... +.  +|++..+++...     . ..  +.....+    .......+|.||.|+|..
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~-~~~~~v~~~~r~~~~~-----~-~~--~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAE-----H-PR--LDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHC-TTCCEEECCBSSCCCC-----C-TT--EECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhC-CCeEEEEEEeCCchhh-----c-cc--ccccccchhhhhhccccchheeeeeeeee
Confidence            78999999999999999887764 54  455555543110     0 00  1111111    122345689999998854

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=92.89  E-value=0.088  Score=37.49  Aligned_cols=79  Identities=13%  Similarity=0.069  Sum_probs=49.6

Q ss_pred             EEEEEcCCchHHHH-HHHHHHHhcCCcEEEEecChhhHHHH-HHcCCCEEEcCCCccccccCCCccEEEECCCCccceee
Q 025278          153 SILVLGGAGGVGTM-VIQLAKHVFGASKVAATSSTAKLDLL-RSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIV  230 (255)
Q Consensus       153 ~VlI~ga~g~~G~~-a~~~a~~~~g~~vi~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~~  230 (255)
                      +|.|+| +|.+|.- .....+...+.++++++.++++.+.+ ++++...+++.-++-. +  ..+|+|+-|+....-...
T Consensus         3 rvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll-~--~~iD~V~I~tp~~~H~~~   78 (167)
T d1xeaa1           3 KIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVL-Q--YGVDAVMIHAATDVHSTL   78 (167)
T ss_dssp             EEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGG-G--GCCSEEEECSCGGGHHHH
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhc-c--cccceecccccccccccc
Confidence            688999 8999964 55666655567777778888877665 5677654443212111 1  357888877765544444


Q ss_pred             eeecc
Q 025278          231 YQKCD  235 (255)
Q Consensus       231 ~~~~~  235 (255)
                      +..++
T Consensus        79 ~~~al   83 (167)
T d1xeaa1          79 AAFFL   83 (167)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            44444

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.83  E-value=0.078  Score=40.21  Aligned_cols=90  Identities=17%  Similarity=0.097  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC-EEEcCCCccccccCCCccEEEECCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD-LAIDYTKENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~~d~vid~~G  223 (255)
                      .++++||=+| +| .|..+..+++.  +.+++++|.+++-++.+++    .|.. .++..+-.++. ..+.+|+|+-..+
T Consensus        36 ~~~~~vLDiG-CG-~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~i~~~~~  110 (246)
T d1y8ca_          36 LVFDDYLDLA-CG-TGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-INRKFDLITCCLD  110 (246)
T ss_dssp             CCTTEEEEET-CT-TSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-CSCCEEEEEECTT
T ss_pred             CCCCeEEEEe-Cc-CCHHHHHHHHh--CCccEeeccchhhhhhccccccccCccceeeccchhhhc-ccccccccceeee
Confidence            4457899998 55 48888888875  7899999999988777643    3422 23332222222 2457999995433


Q ss_pred             Ccc----------ceeeeeeccccCCceEEE
Q 025278          224 KMC----------ISIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       224 ~~~----------~~~~~~~~~~~~~G~~v~  244 (255)
                      .-.          ....+.+.++ ++|.+++
T Consensus       111 ~~~~~~~~~~~~~~l~~~~~~Lk-pgG~~i~  140 (246)
T d1y8ca_         111 STNYIIDSDDLKKYFKAVSNHLK-EGGVFIF  140 (246)
T ss_dssp             GGGGCCSHHHHHHHHHHHHTTEE-EEEEEEE
T ss_pred             eeeccCCHHHHHHHHHHHHHhCC-CCeEEEE
Confidence            211          1233455566 7888774

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=92.79  E-value=0.63  Score=37.11  Aligned_cols=98  Identities=12%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChhhHHH-HHHc----CCCEEEcCCCccccccCCCccEEEE
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTAKLDL-LRSL----GADLAIDYTKENIEDLPEKFDVVFD  220 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~~~~~-~~~~----g~~~v~~~~~~~~~~~~~~~d~vid  220 (255)
                      ..+..+++.|+| +|..+...++......+. ++.+.++++++.+. ++++    |..... .  .+.++..++.|+|+-
T Consensus       124 A~~da~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~-~--~s~~eav~~ADIi~t  199 (340)
T d1x7da_         124 ARPNARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRR-A--SSVAEAVKGVDIITT  199 (340)
T ss_dssp             SCTTCCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEE-C--SSHHHHHTTCSEEEE
T ss_pred             hccCCceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCcee-c--CCHHHHHhcCCceee
Confidence            335568999999 999999887776666564 55677888776553 4443    332221 1  233444578999998


Q ss_pred             CCCCccc-eeeeeeccccCCceEEEEeecc
Q 025278          221 AVGKMCI-SIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       221 ~~G~~~~-~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      |+.+... ...-..+++ ++-.+..+|...
T Consensus       200 ~Tas~s~~Pv~~~~~l~-pG~hI~aiGs~~  228 (340)
T d1x7da_         200 VTADKAYATIITPDMLE-PGMHLNAVGGDC  228 (340)
T ss_dssp             CCCCSSEEEEECGGGCC-TTCEEEECSCCB
T ss_pred             ccccCCCCcccchhhcC-CCCEEeecccch
Confidence            8875532 233355665 666777887754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.54  E-value=0.054  Score=41.78  Aligned_cols=72  Identities=22%  Similarity=0.401  Sum_probs=46.8

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh------HHHHH---HcCCCEEEcCCCccc---cccCCCccEEE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK------LDLLR---SLGADLAIDYTKENI---EDLPEKFDVVF  219 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~------~~~~~---~~g~~~v~~~~~~~~---~~~~~~~d~vi  219 (255)
                      ++|||+||+|-+|...+..+... |.+|++++++...      .....   ..+.+ ++..+-.+.   .....+.+.++
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~-G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~vi   81 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGAN-IVHGSIDDHASLVEAVKNVDVVI   81 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCE-EECCCTTCHHHHHHHHHTCSEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEECCCccccchhHHHHHHhhccCCcE-EEEeecccchhhhhhhhhceeee
Confidence            57999999999999998888874 9999999875432      22222   23343 333222221   12234788898


Q ss_pred             ECCCCc
Q 025278          220 DAVGKM  225 (255)
Q Consensus       220 d~~G~~  225 (255)
                      .+.+..
T Consensus        82 ~~~~~~   87 (307)
T d1qyca_          82 STVGSL   87 (307)
T ss_dssp             ECCCGG
T ss_pred             eccccc
Confidence            887743

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.54  E-value=0.068  Score=42.02  Aligned_cols=44  Identities=27%  Similarity=0.263  Sum_probs=33.7

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh--hHHHHHHcC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA--KLDLLRSLG  196 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~--~~~~~~~~g  196 (255)
                      ++|||+||+|-+|..++..+.. .|.+|+++++...  +...++.++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~-~g~~V~~~~r~~~~~~~~~l~~~~   46 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLE-KGYRVHGLVARRSSDTRWRLRELG   46 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCCSSCCCHHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEECCCCcccHHHHHHhc
Confidence            5899999999999999988877 4999999987432  334444444

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.53  E-value=0.083  Score=41.26  Aligned_cols=38  Identities=24%  Similarity=0.284  Sum_probs=32.0

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .....++|+|+| +|..|+.++..++.. |.+|.+++.++
T Consensus        26 ~~~~pkkV~IIG-aG~aGLsaA~~L~~~-G~~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVG-AGMAGLSAAYVLAGA-GHQVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEEC-CBHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             CCCCCCeEEEEC-CCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            345667999999 899999999888885 99999998764

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.0088  Score=43.10  Aligned_cols=95  Identities=20%  Similarity=0.182  Sum_probs=50.0

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcC----CCEEEcCCCccccccCCCccEEEECCCCccce
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLG----ADLAIDYTKENIEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~  228 (255)
                      +|.|.|++|-+|++.++++....+.+++.....+.....-+.+|    ....-.....+.....+.+|++||++-.....
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~p~~~~   85 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTL   85 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEeccHHHHH
Confidence            68999989999999999988755666664432221111101111    00000000011222345678888887765544


Q ss_pred             eeeeeccccCCceEEEEeecc
Q 025278          229 IVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       229 ~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      ..+..+.  ..|+=+.+|..+
T Consensus        86 ~~~~~a~--~~~~~~ViGTTG  104 (162)
T d1diha1          86 NHLAFCR--QHGKGMVIGTTG  104 (162)
T ss_dssp             HHHHHHH--HTTCEEEECCCC
T ss_pred             HHHHHHH--hccceeEEecCC
Confidence            4443333  246656666543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.25  E-value=0.055  Score=39.69  Aligned_cols=72  Identities=10%  Similarity=0.179  Sum_probs=48.1

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEE------EcCC---CccccccCCCccEEEECCC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLA------IDYT---KENIEDLPEKFDVVFDAVG  223 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v------~~~~---~~~~~~~~~~~d~vid~~G  223 (255)
                      +|.|+| +|..|.+.+..+.. .|.+|....++++..+.+.+-+....      +..+   ..+..+..++.|++|-++.
T Consensus         9 KI~ViG-aG~wGtAlA~~La~-~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP   86 (189)
T d1n1ea2           9 KAVVFG-SGAFGTALAMVLSK-KCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP   86 (189)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHT-TEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC
T ss_pred             eEEEEC-CCHHHHHHHHHHHH-cCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc
Confidence            699999 99999998888877 47899999999988887754332111      1000   0122233456788888877


Q ss_pred             Ccc
Q 025278          224 KMC  226 (255)
Q Consensus       224 ~~~  226 (255)
                      +..
T Consensus        87 s~~   89 (189)
T d1n1ea2          87 TQF   89 (189)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.22  E-value=0.16  Score=35.69  Aligned_cols=75  Identities=15%  Similarity=0.086  Sum_probs=45.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH-HH-------cCCCEEEcCCCccccccCCCccEEEE
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL-RS-------LGADLAIDYTKENIEDLPEKFDVVFD  220 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~-~~-------~g~~~v~~~~~~~~~~~~~~~d~vid  220 (255)
                      ++..+|.|+| +|.+|..++.++...+-.+++.+|.++++.+-. ..       ++....+.. ..+..+..++.|+|+-
T Consensus         5 ~k~~KI~IIG-aG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           5 QRRKKVAMIG-SGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-EYSYEAALTGADCVIV   82 (154)
T ss_dssp             SCCCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-ECSHHHHHTTCSEEEE
T ss_pred             cCCCcEEEEC-CCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEec-cCchhhhhcCCCeEEE
Confidence            4567899999 699998887776664225788888887664422 22       221111111 1122233468999999


Q ss_pred             CCCCc
Q 025278          221 AVGKM  225 (255)
Q Consensus       221 ~~G~~  225 (255)
                      +.|..
T Consensus        83 tag~~   87 (154)
T d1pzga1          83 TAGLT   87 (154)
T ss_dssp             CCSCS
T ss_pred             ecccc
Confidence            99844

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.15  E-value=0.097  Score=39.38  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=32.4

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      .+.+++|+|+| +|+.|+.++..++.. |.++.+++.+++
T Consensus        46 ~~~~k~VvIIG-aGpAGl~aA~~l~~~-G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVG-AGPSGSEAARVLMES-GYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             ccCCceEEEEc-ccHHHHHHHHHHHHh-ccceeeEeeccc
Confidence            35678999999 899999999988884 999999986553

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.11  E-value=0.16  Score=36.40  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLG  196 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g  196 (255)
                      .+|-++| .|.+|...+.-+.. .|.+|++.+++++|.+.+.+.+
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~~-~G~~V~v~dr~~~~~~~l~~~~   45 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMND-HGFVVCAFNRTVSKVDDFLANE   45 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHH-TTCCEEEECSSTHHHHHHHHTT
T ss_pred             CcEEEEe-EhHHHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHhc
Confidence            4688999 99999987777776 4999999999999998876554

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.06  E-value=0.18  Score=40.13  Aligned_cols=71  Identities=23%  Similarity=0.236  Sum_probs=43.7

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh----hhHHHH---HHcCCCEEEcCCCccccc---c--CCCccEEE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST----AKLDLL---RSLGADLAIDYTKENIED---L--PEKFDVVF  219 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~----~~~~~~---~~~g~~~v~~~~~~~~~~---~--~~~~d~vi  219 (255)
                      +.|||+||+|-+|...+..+... |.+|+++++..    +.....   ..-+...+ ..+-.+..+   .  ..++|+||
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFY-EVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTHHHHHHHHHHTSCCCEE-ECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-cCeEEEEECCCCcchhHHHhHHhhcccCCeEE-EeecCCHHHHHHHHhccCCCEEE
Confidence            57999999999999988888874 89999986421    122222   22233322 222122221   1  23799999


Q ss_pred             ECCCC
Q 025278          220 DAVGK  224 (255)
Q Consensus       220 d~~G~  224 (255)
                      .+++.
T Consensus        80 hlAa~   84 (347)
T d1z45a2          80 HFAGL   84 (347)
T ss_dssp             ECCSC
T ss_pred             Ecccc
Confidence            98774

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=91.86  E-value=0.052  Score=38.05  Aligned_cols=67  Identities=21%  Similarity=0.170  Sum_probs=38.1

Q ss_pred             EEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccce
Q 025278          155 LVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       155 lI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~  228 (255)
                      -++| +|.+|...+..++. .+....+..|+.++.+.+.+.+.....+     ..+..+..|+||=|+......
T Consensus         3 gfIG-~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~~-----~~~~~~~~DiVil~v~d~~i~   69 (153)
T d2i76a2           3 NFVG-TGTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGKAAT-----LEKHPELNGVVFVIVPDRYIK   69 (153)
T ss_dssp             EEES-CCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCS-----SCCCCC---CEEECSCTTTHH
T ss_pred             EEEe-CcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccccccc-----hhhhhccCcEEEEeccchhhh
Confidence            4678 99999998876654 2333346789999998887655432222     122334566666666544433

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=91.85  E-value=0.12  Score=40.23  Aligned_cols=97  Identities=19%  Similarity=0.194  Sum_probs=61.0

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHH----cCCCEEE-cCCCccccccCCCccEEE
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRS----LGADLAI-DYTKENIEDLPEKFDVVF  219 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~----~g~~~v~-~~~~~~~~~~~~~~d~vi  219 (255)
                      .++.++.+||=+| +| .|..+..+++... +.+++++|.+++-++.+++    .+.+..+ ..+..+. ...+.+|+|+
T Consensus        23 ~~~~~~~~ILDiG-cG-~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~v~   99 (281)
T d2gh1a1          23 WKITKPVHIVDYG-CG-YGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAI   99 (281)
T ss_dssp             SCCCSCCEEEEET-CT-TTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEE
T ss_pred             hccCCcCEEEEec-Cc-CCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceEEE
Confidence            3567788999888 65 5888888887643 5789999999988887754    3333222 2222221 1235799999


Q ss_pred             ECCCCc------cceeeeeeccccCCceEEEEe
Q 025278          220 DAVGKM------CISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       220 d~~G~~------~~~~~~~~~~~~~~G~~v~~G  246 (255)
                      -.-.-.      .....+.+.++ ++|+++.+-
T Consensus       100 ~~~~l~~~~d~~~~l~~~~~~Lk-pgG~lii~~  131 (281)
T d2gh1a1         100 CHAFLLHMTTPETMLQKMIHSVK-KGGKIICFE  131 (281)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred             EehhhhcCCCHHHHHHHHHHHcC-cCcEEEEEE
Confidence            653311      12233456666 789887754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.84  E-value=0.14  Score=34.32  Aligned_cols=37  Identities=11%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      +.+++++|.| +|.+|+=+++.++.+ |.+|.++.+++.
T Consensus        30 ~~~~~vvIiG-gG~iG~E~A~~l~~~-g~~Vtlv~~~~~   66 (122)
T d1xhca2          30 ENSGEAIIIG-GGFIGLELAGNLAEA-GYHVKLIHRGAM   66 (122)
T ss_dssp             HHHSEEEEEE-CSHHHHHHHHHHHHT-TCEEEEECSSSC
T ss_pred             hcCCcEEEEC-CcHHHHHHHHHhhcc-cceEEEEecccc
Confidence            3457899999 899999999988885 999999987653

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.72  E-value=0.092  Score=42.67  Aligned_cols=32  Identities=19%  Similarity=0.256  Sum_probs=28.2

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT  183 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~  183 (255)
                      |++|||+||+|-+|..++..+.. .|.+|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~-~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSK-KNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEe
Confidence            68999999999999999888887 499999987

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.68  E-value=0.15  Score=34.08  Aligned_cols=38  Identities=18%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .++..++|+|.| +|.+|+=++..++.+ |.+|.++.+.+
T Consensus        18 ~l~~p~~v~IiG-gG~iG~E~A~~l~~~-g~~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVG-SGYIAVELINVIKRL-GIDSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECSSS
T ss_pred             ccCCCCEEEEEC-CchHHHHHHHHHHhc-cccceeeehhc
Confidence            344568999999 899999999999885 99999998754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.55  E-value=0.26  Score=33.04  Aligned_cols=39  Identities=13%  Similarity=0.192  Sum_probs=32.3

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      ..-..+++|+|.| +|.+|+-+++.++.+ |.+|.++.+.+
T Consensus        25 ~~~~~~k~vvViG-gG~iG~E~A~~l~~~-g~~Vtlie~~~   63 (123)
T d1nhpa2          25 TVDPEVNNVVVIG-SGYIGIEAAEAFAKA-GKKVTVIDILD   63 (123)
T ss_dssp             HTCTTCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             hhccCCCEEEEEC-ChHHHHHHHHHhhcc-ceEEEEEEecC
Confidence            3445678999999 899999999999885 99999997654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=91.37  E-value=0.22  Score=36.98  Aligned_cols=98  Identities=9%  Similarity=0.115  Sum_probs=58.6

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHh--cCCcEEEEecChhhHHHHHH----cCCCEEEcCCCcccccc-CCCccEEE
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHV--FGASKVAATSSTAKLDLLRS----LGADLAIDYTKENIEDL-PEKFDVVF  219 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~--~g~~vi~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~-~~~~d~vi  219 (255)
                      ..+++.+||=+| +| .|..+..+++..  .+++++++|.+++-++.+++    .+....+.....+..+. ...+|+++
T Consensus        36 ~~~~~~~vLDlG-CG-tG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~  113 (225)
T d1im8a_          36 FVTADSNVYDLG-CS-RGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVI  113 (225)
T ss_dssp             HCCTTCEEEEES-CT-TCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEE
T ss_pred             hcCCCCEEEEec-cc-hhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeE
Confidence            468899999998 54 477777777642  47899999999998888764    23221111111111111 23567766


Q ss_pred             ECCCCc--------cceeeeeeccccCCceEEEEee
Q 025278          220 DAVGKM--------CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       220 d~~G~~--------~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      -+..-.        .....+.+.++ ++|.+++.-.
T Consensus       114 ~~~~l~~~~~~d~~~~l~~i~~~Lk-pgG~li~~~~  148 (225)
T d1im8a_         114 LNFTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEK  148 (225)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             EeeeccccChhhHHHHHHHHHHhCC-CCceeecccc
Confidence            543311        12333455667 7899987643

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.06  E-value=0.73  Score=30.23  Aligned_cols=54  Identities=19%  Similarity=0.166  Sum_probs=35.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEecChh--------h----HHHHHHcCCCEEEcCC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVF--GASKVAATSSTA--------K----LDLLRSLGADLAIDYT  204 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~--g~~vi~~~~~~~--------~----~~~~~~~g~~~v~~~~  204 (255)
                      ..++++|.| +|.+|.=.+.++..+.  |.+|.++.+.+.        -    .+.+++.|.+...+..
T Consensus        17 ~p~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~   84 (117)
T d1feca2          17 APKRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHEN   84 (117)
T ss_dssp             CCSEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCC
T ss_pred             cCCeEEEEC-CChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCE
Confidence            357899999 8999988777655432  678888876543        1    1234567766555543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=91.05  E-value=1.2  Score=30.73  Aligned_cols=72  Identities=13%  Similarity=0.070  Sum_probs=45.0

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHH-HHH-------cCCCEEEcCCCccccccCCCccEEEE
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDL-LRS-------LGADLAIDYTKENIEDLPEKFDVVFD  220 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~-~~~-------~g~~~v~~~~~~~~~~~~~~~d~vid  220 (255)
                      ...+|.|+| +|.+|...+..+...+ ..+++.+|.++++.+- +.+       .+...+...   ++++ ..+.|+|+-
T Consensus         4 ~~~KI~IIG-aG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~---d~~~-~~~adivvi   78 (146)
T d1ez4a1           4 NHQKVVLVG-DGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG---EYSD-CKDADLVVI   78 (146)
T ss_dssp             TBCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEEC---CGGG-GTTCSEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeec---cHHH-hccccEEEE
Confidence            356899999 7999998777776642 2478888988876532 111       122222221   2233 368999999


Q ss_pred             CCCCcc
Q 025278          221 AVGKMC  226 (255)
Q Consensus       221 ~~G~~~  226 (255)
                      ++|.+.
T Consensus        79 tag~~~   84 (146)
T d1ez4a1          79 TAGAPQ   84 (146)
T ss_dssp             CCCC--
T ss_pred             eccccc
Confidence            998543

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.99  E-value=0.35  Score=33.50  Aligned_cols=71  Identities=21%  Similarity=0.171  Sum_probs=43.7

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHHHHHHcC-CC-----EEEcCCCccccccCCCccEEEECCCCc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLDLLRSLG-AD-----LAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~~~~~~g-~~-----~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      +|.|+||+|.+|...+.++...+- .+++.+|.++.+.+ +..+. ++     ..+. ...+..+..++.|+|+=+.|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~-a~Dl~~~~~~~~~~~~~-~~~~~~~~~~~aDivVitag~~   79 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV-AADLSHIETRATVKGYL-GPEQLPDCLKGCDVVVIPAGVP   79 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH-HHHHTTSSSSCEEEEEE-SGGGHHHHHTTCSEEEECCSCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh-hHHHhhhhhhcCCCeEE-cCCChHHHhCCCCEEEECCCcC
Confidence            689999779999998888876322 34667787765543 33322 11     1111 1222333346899999998843

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.69  Score=37.00  Aligned_cols=57  Identities=25%  Similarity=0.356  Sum_probs=44.6

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe---cChhhHHHHHHcCCCEEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT---SSTAKLDLLRSLGADLAI  201 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~---~~~~~~~~~~~~g~~~v~  201 (255)
                      .+...+++++.|+... +|..|.+.+.+|+.+ |.+.+++.   .+++|.+.++.+|++.+.
T Consensus        89 ~~~g~~~~~~~vv~aS-sGN~g~a~A~~a~~~-Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~  148 (355)
T d1jbqa_          89 ERDGTLKPGDTIIEPT-SGNTGIGLALAAAVR-GYRCIIVMPEKMSSEKVDVLRALGAEIVR  148 (355)
T ss_dssp             HHHTCSCTTCEEEEEC-SSHHHHHHHHHHHHH-TCEEEEEECSCCCHHHHHHHHHTTCEEEE
T ss_pred             HHcCCcccCceEEEec-ccchhhHHHHHHHhc-cCCeEEEeeccchHHHHHHHHhcCCeEEE
Confidence            3455667777666554 999999999999996 98888774   467888999999998654

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.71  E-value=0.43  Score=37.52  Aligned_cols=72  Identities=21%  Similarity=0.252  Sum_probs=44.0

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhH---HHHHHcCCC---EEEcCCCccccccCCCccEEE
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKL---DLLRSLGAD---LAIDYTKENIEDLPEKFDVVF  219 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~---~~~~~~g~~---~v~~~~~~~~~~~~~~~d~vi  219 (255)
                      ..+.+|++||-+| +|. |.++..+|++ ++.+|++++.++.-.   +.++..+..   .+++.+..+.....+.+|+|+
T Consensus        29 ~~~~~~~~VLDiG-cG~-G~ls~~aa~~-Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~iv  105 (316)
T d1oria_          29 RHLFKDKVVLDVG-SGT-GILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIII  105 (316)
T ss_dssp             HHHHTTCEEEEET-CTT-SHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             cccCCcCEEEEEe-cCC-cHHHHHHHHh-CCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEe
Confidence            3466899999998 554 8888877775 456799999876422   122333321   234443333333335799987


Q ss_pred             E
Q 025278          220 D  220 (255)
Q Consensus       220 d  220 (255)
                      .
T Consensus       106 s  106 (316)
T d1oria_         106 S  106 (316)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.67  E-value=0.15  Score=40.46  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=32.8

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS  184 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~  184 (255)
                      ++.......+++||+||+|-+|...+..+... |.+|+++++
T Consensus         8 ~~~~~~~~~k~iLVTG~tGfIGs~lv~~L~~~-g~~V~~~d~   48 (341)
T d1sb8a_           8 LRKELPAQPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDN   48 (341)
T ss_dssp             HHHHHHHSCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             HHHhCCCCCCEEEEecCCCHHHHHHHHHHHHC-cCEEEEEEC
Confidence            33333445678999999999999999888884 999999975

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.61  E-value=0.22  Score=33.44  Aligned_cols=35  Identities=14%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      ..++++|+| +|.+|+=.++++..+ |.+|.++.+.+
T Consensus        22 ~p~~~vIiG-~G~ig~E~A~~l~~l-G~~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIG-GGIIGLEMGSVYSRL-GSKVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CCCeEEEEC-CCchHHHHHHHHHhh-CcceeEEEecc
Confidence            347899999 899999999999996 99999998755

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=90.50  E-value=0.19  Score=37.54  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      +.-++|+|+| +|..|++++..++. .|.+|.++++.
T Consensus         4 ~~~~kVvVIG-aGiaGl~~A~~L~~-~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLG-SGVIGLSSALILAR-KGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             CCCCcEEEEC-ccHHHHHHHHHHHH-CCCCEEEEeCC
Confidence            3456899999 89999998888888 49999999863

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.49  E-value=0.19  Score=38.96  Aligned_cols=94  Identities=15%  Similarity=0.108  Sum_probs=53.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcC-C---------------CEEEcCCCccccccC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLG-A---------------DLAIDYTKENIEDLP  212 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g-~---------------~~v~~~~~~~~~~~~  212 (255)
                      ...++|||+|+  |-|..+-.+++. ...++.+++.+++=.+.++++- .               -.++..+...+.+..
T Consensus        71 ~~p~~vLiiG~--G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~  147 (276)
T d1mjfa_          71 PKPKRVLVIGG--GDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  147 (276)
T ss_dssp             SCCCEEEEEEC--TTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCCceEEEecC--CchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence            45679999993  335555556665 4567888899998888887532 1               023322222222234


Q ss_pred             CCccEEE-ECCCCcc---------ceeeeeeccccCCceEEEEe
Q 025278          213 EKFDVVF-DAVGKMC---------ISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       213 ~~~d~vi-d~~G~~~---------~~~~~~~~~~~~~G~~v~~G  246 (255)
                      +.+|+|| |......         ....+.+.++ ++|.++.=+
T Consensus       148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~-~~Gv~v~q~  190 (276)
T d1mjfa_         148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALN-NPGIYVTQA  190 (276)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcC-CCceEEEec
Confidence            6799988 4443221         1222445555 688876543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.29  E-value=0.17  Score=36.47  Aligned_cols=77  Identities=19%  Similarity=0.162  Sum_probs=45.5

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhh--HHHHHHcCCCE---------EEcCCCccccccCCCccEEEE
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAK--LDLLRSLGADL---------AIDYTKENIEDLPEKFDVVFD  220 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~--~~~~~~~g~~~---------v~~~~~~~~~~~~~~~d~vid  220 (255)
                      ..|.|+| +|..|.+.+..+.. .+.+|....+..++  .+...+.....         .+.. ..+..+..++.|+||-
T Consensus         1 MkI~ViG-aG~~GtalA~~la~-~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~ad~Ii~   77 (180)
T d1txga2           1 MIVSILG-AGAMGSALSVPLVD-NGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFW-PEQLEKCLENAEVVLL   77 (180)
T ss_dssp             CEEEEES-CCHHHHHHHHHHHH-HCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEEC-GGGHHHHHTTCSEEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccc-cccHHHHHhccchhhc
Confidence            3688999 89999998887777 48899988874332  33332211100         0000 1122223457889988


Q ss_pred             CCCCccceeee
Q 025278          221 AVGKMCISIVY  231 (255)
Q Consensus       221 ~~G~~~~~~~~  231 (255)
                      ++........+
T Consensus        78 avps~~~~~~~   88 (180)
T d1txga2          78 GVSTDGVLPVM   88 (180)
T ss_dssp             CSCGGGHHHHH
T ss_pred             ccchhhhHHHH
Confidence            88765544443

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.26  E-value=0.36  Score=39.58  Aligned_cols=53  Identities=23%  Similarity=0.256  Sum_probs=43.4

Q ss_pred             HHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH
Q 025278          139 AYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR  193 (255)
Q Consensus       139 a~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~  193 (255)
                      ....+++.++++|++++=+| + |.|..+.++|+..+..++++++.++...+.++
T Consensus       205 i~~Il~~l~Lkpgd~fLDLG-C-G~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak  257 (406)
T d1u2za_         205 LSDVYQQCQLKKGDTFMDLG-S-GVGNCVVQAALECGCALSFGCEIMDDASDLTI  257 (406)
T ss_dssp             HHHHHHHTTCCTTCEEEEES-C-TTSHHHHHHHHHHCCSEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEeCC-C-CCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence            55677889999999999888 4 66999999999863358999999988777664

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.19  E-value=0.26  Score=32.58  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      +++++|.| +|.+|+=+++.++.+ |.+|.++.+.+.
T Consensus        21 p~~vvIiG-gG~~G~E~A~~l~~~-g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVG-GGYIGLELGIAYRKL-GAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             CCeEEEEC-CCHHHHHHHHHHhhc-ccceEEEeeecc
Confidence            47899999 899999999999986 999999987543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=90.18  E-value=0.15  Score=37.52  Aligned_cols=35  Identities=29%  Similarity=0.473  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .|++|.|+| .|.+|...++.++.. |.+|++.++..
T Consensus        44 ~~ktvgIiG-~G~IG~~va~~l~~f-g~~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMG-TGHIGQVAIKLFKGF-GAKVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             cceeeeeee-ccccccccccccccc-ceeeeccCCcc
Confidence            468999999 999999999999995 99999998754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.08  E-value=0.26  Score=36.10  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=33.7

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS  194 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~  194 (255)
                      +|.|+| +|-+|+..+..+.. .|.+|+++|.++++.+.+++
T Consensus         2 kI~ViG-lG~vGl~~a~~la~-~g~~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFG-LGYVGAVCAGCLSA-RGHEVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHT
T ss_pred             EEEEEC-CCHhHHHHHHHHHh-CCCcEEEEeCCHHHHHHhcc
Confidence            588999 99999987777666 49999999999998887764

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=90.01  E-value=0.33  Score=34.70  Aligned_cols=73  Identities=25%  Similarity=0.350  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCCchHHHHH---HHHHHH--hcCCcEEEEecChhhHHHH--------HHcCCCEEEcCCCccccccCCCcc
Q 025278          150 AGKSILVLGGAGGVGTMV---IQLAKH--VFGASKVAATSSTAKLDLL--------RSLGADLAIDYTKENIEDLPEKFD  216 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a---~~~a~~--~~g~~vi~~~~~~~~~~~~--------~~~g~~~v~~~~~~~~~~~~~~~d  216 (255)
                      |+..|.|+| +|.+|...   ..+++.  +.+.+++.+|.+++|++..        ..++...-+.... +..+...+.|
T Consensus         1 p~mKI~iIG-aGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~t-d~~eaL~dad   78 (171)
T d1obba1           1 PSVKIGIIG-AGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTM-NLDDVIIDAD   78 (171)
T ss_dssp             CCCEEEEET-TTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEES-CHHHHHTTCS
T ss_pred             CCcEEEEEC-CCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeC-ChhhcccCCC
Confidence            466899999 79888542   223332  1135888999999887632        2344332222211 2233346899


Q ss_pred             EEEECCCC
Q 025278          217 VVFDAVGK  224 (255)
Q Consensus       217 ~vid~~G~  224 (255)
                      +|+.+.+.
T Consensus        79 ~Vv~~~~~   86 (171)
T d1obba1          79 FVINTAMV   86 (171)
T ss_dssp             EEEECCCT
T ss_pred             eEeeeccc
Confidence            99998763

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.91  E-value=0.16  Score=39.11  Aligned_cols=33  Identities=27%  Similarity=0.450  Sum_probs=28.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      .|+|.| +|+.|++++..++.. |.+|.+++++++
T Consensus         4 ~V~IvG-aGp~Gl~~A~~L~~~-G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIG-AGPSGLLLGQLLHKA-GIDNVILERQTP   36 (292)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHH-TCCEEEECSSCH
T ss_pred             CEEEEC-cCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            489999 899999998888885 999999987653

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.90  E-value=0.47  Score=37.51  Aligned_cols=71  Identities=18%  Similarity=0.238  Sum_probs=43.0

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCC---EEEcCCCccccccCCCccEE
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGAD---LAIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~---~v~~~~~~~~~~~~~~~d~v  218 (255)
                      ....+|++||-+| +| .|.++..+|++ +..+|++++.++ ..+.+    ++.+..   .++..+..+.....+.+|+|
T Consensus        34 ~~~~~~~~VLDlG-cG-tG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i  109 (328)
T d1g6q1_          34 KDLFKDKIVLDVG-CG-TGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDII  109 (328)
T ss_dssp             HHHHTTCEEEEET-CT-TSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEE
T ss_pred             cccCCcCEEEEeC-CC-CCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEE
Confidence            3456899999998 55 47777777775 456888998775 23333    344422   23433333332223579998


Q ss_pred             EE
Q 025278          219 FD  220 (255)
Q Consensus       219 id  220 (255)
                      +-
T Consensus       110 ~s  111 (328)
T d1g6q1_         110 IS  111 (328)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.83  E-value=0.19  Score=39.58  Aligned_cols=33  Identities=18%  Similarity=0.162  Sum_probs=29.6

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      +++||+||+|-+|...+..+.. .|.+|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~-~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLG-KGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHH-CcCEEEEEECC
Confidence            5799999999999999998888 49999999974

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=89.76  E-value=0.96  Score=36.59  Aligned_cols=56  Identities=18%  Similarity=0.164  Sum_probs=43.4

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec---ChhhHHHHHHcCCCEEEcC
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS---STAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~---~~~~~~~~~~~g~~~v~~~  203 (255)
                      .+++++++| |...+|..|++.+.+|+.+ |.+.+++..   +++|.+.++.+|++.+...
T Consensus       139 ~~~~~g~~V-VeaSSGN~GiAlA~~aa~l-Gik~~Iv~P~~~~~~K~~~ira~GAeVi~~~  197 (382)
T d1wkva1         139 RRVEKGSLV-ADATSSNFGVALSAVARLY-GYRARVYLPGAAEEFGKLLPRLLGAQVIVDP  197 (382)
T ss_dssp             TTSCTTCEE-EEECCHHHHHHHHHHHHHT-TCEEEEEEETTSCHHHHHHHHHTTCEEEEET
T ss_pred             hccCCCCEE-EEeCCcHHHHHHHHHHHHc-CCCEEEEeeccccccccccccccCcceeecC
Confidence            346777764 4555899999999999995 988887753   6678888899999876544

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.70  E-value=0.32  Score=34.94  Aligned_cols=86  Identities=14%  Similarity=0.073  Sum_probs=54.4

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHHH-HHcCCC---EEEcCCCcccccc--CCCccEEEECCCCc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLL-RSLGAD---LAIDYTKENIEDL--PEKFDVVFDAVGKM  225 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~-~~~g~~---~v~~~~~~~~~~~--~~~~d~vid~~G~~  225 (255)
                      ++.|+| +|.+|...+..++...+.+++++ ++++++.+.+ ++++..   .+++    ++.+.  ...+|+|+-|+...
T Consensus         3 ki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~ll~~~~iD~v~I~tp~~   77 (184)
T d1ydwa1           3 RIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG----SYESLLEDPEIDALYVPLPTS   77 (184)
T ss_dssp             EEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES----SHHHHHHCTTCCEEEECCCGG
T ss_pred             EEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecC----cHHHhhhccccceeeecccch
Confidence            578999 89999988888877657788755 6777776554 566632   2332    22222  24689988887765


Q ss_pred             cceeeeeeccccCCceEEEE
Q 025278          226 CISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       226 ~~~~~~~~~~~~~~G~~v~~  245 (255)
                      .-...+..+++  .|.=+++
T Consensus        78 ~h~~~~~~~l~--~g~~v~~   95 (184)
T d1ydwa1          78 LHVEWAIKAAE--KGKHILL   95 (184)
T ss_dssp             GHHHHHHHHHT--TTCEEEE
T ss_pred             hhcchhhhhhh--ccceeec
Confidence            55555555553  3544443

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.67  E-value=0.26  Score=33.04  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      ..++++|+| +|.+|+=.+++++.+ |.+|.++.++
T Consensus        19 ~P~~vvIIG-gG~iG~E~A~~l~~l-G~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVG-ASYVALECAGFLAGI-GLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             CCCeEEEEC-CCccHHHHHHHHhhc-CCeEEEEEec
Confidence            346799999 899999999999996 9999998765

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.66  E-value=0.69  Score=31.94  Aligned_cols=71  Identities=23%  Similarity=0.274  Sum_probs=41.7

Q ss_pred             EEEEEcCCchHHHHHHHHHH-Hh-cCCcEEEEecChhhHHHHHHcC---C---CEEEcCCCccccccCCCccEEEECCCC
Q 025278          153 SILVLGGAGGVGTMVIQLAK-HV-FGASKVAATSSTAKLDLLRSLG---A---DLAIDYTKENIEDLPEKFDVVFDAVGK  224 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~-~~-~g~~vi~~~~~~~~~~~~~~~g---~---~~v~~~~~~~~~~~~~~~d~vid~~G~  224 (255)
                      +|.|+|++|.+|...+.++. .. ...++..++..+.....+.++.   .   ...+. ...++. ..++.|+|+=+.|.
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~-~~~~~~-~~~~aDvvvitaG~   79 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFS-GEDATP-ALEGADVVLISAGV   79 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEEC-SSCCHH-HHTTCSEEEECCSC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEE-cCCCcc-ccCCCCEEEECCCc
Confidence            68899988999987776543 32 1456777777554333333321   1   11121 122232 24589999999995


Q ss_pred             c
Q 025278          225 M  225 (255)
Q Consensus       225 ~  225 (255)
                      +
T Consensus        80 ~   80 (145)
T d2cmda1          80 R   80 (145)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=89.57  E-value=0.13  Score=37.42  Aligned_cols=88  Identities=18%  Similarity=0.165  Sum_probs=49.5

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh---hHHHH-HHc-CCCEEEcCCCccccccCCCccEEEECCCCccc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA---KLDLL-RSL-GADLAIDYTKENIEDLPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~---~~~~~-~~~-g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~  227 (255)
                      +|.|+||+|-+|+-.++++......++..+..+..   +.... ..+ +.+....  .........++|++|-|.+...+
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNL--VAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCC--BCGGGCCGGGCSEEEECCSSSHH
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccc--hhhhhhhhcccceeeeccccchH
Confidence            68999999999999999998854556555543222   12211 111 1110000  00111123478999999997776


Q ss_pred             eeeeeeccccCCceEEE
Q 025278          228 SIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       228 ~~~~~~~~~~~~G~~v~  244 (255)
                      ...+..+.  ..+..+.
T Consensus        85 ~~~~~~l~--~~~~~v~   99 (183)
T d2cvoa1          85 QEIIKGLP--QELKIVD   99 (183)
T ss_dssp             HHHHHTSC--SSCEEEE
T ss_pred             HHHHHHHH--hcCcccc
Confidence            55554433  3455544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.51  E-value=1.1  Score=30.80  Aligned_cols=73  Identities=11%  Similarity=0.059  Sum_probs=49.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHH-HH---HHcCCCEEEcCCCcc---ccc-cCCCccEEEECCC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLD-LL---RSLGADLAIDYTKEN---IED-LPEKFDVVFDAVG  223 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~-~~---~~~g~~~v~~~~~~~---~~~-~~~~~d~vid~~G  223 (255)
                      +.++|.| .|.+|...++.++.. +.++++++.++++.. .+   ...|... +..+..+   +.+ ..+.+|.++-+++
T Consensus         4 nHiII~G-~g~~g~~l~~~L~~~-~~~v~vId~d~~~~~~~~~~~~~~~~~v-i~Gd~~d~~~L~~a~i~~a~~vi~~~~   80 (153)
T d1id1a_           4 DHFIVCG-HSILAINTILQLNQR-GQNVTVISNLPEDDIKQLEQRLGDNADV-IPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHCTTCEE-EESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEeccchhHHHHHHHhhcCCcEE-EEccCcchHHHHHhccccCCEEEEccc
Confidence            4689999 899999999999884 999999998876432 22   3345544 3333222   111 1457899998888


Q ss_pred             Cccc
Q 025278          224 KMCI  227 (255)
Q Consensus       224 ~~~~  227 (255)
                      ....
T Consensus        81 ~d~~   84 (153)
T d1id1a_          81 NDAD   84 (153)
T ss_dssp             CHHH
T ss_pred             cHHH
Confidence            6543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.35  E-value=0.21  Score=36.72  Aligned_cols=32  Identities=16%  Similarity=0.310  Sum_probs=27.5

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      -|+|+| +|+.|+.++..+..+ |.+|++++..+
T Consensus         5 DvvVIG-gGpaGl~aA~~aa~~-G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIG-GGPGGYVAAIKAAQL-GFKTTCIEKRG   36 (221)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHH-TCCEEEEECSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCcEEEEEecC
Confidence            488999 899999999999885 99999998653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=89.34  E-value=0.28  Score=34.46  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecCh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSST  186 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~  186 (255)
                      .|++|+|.| +|..|+.+++.++.++ ..+++++++++
T Consensus         1 ~gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            488999999 8999999888888762 25777777654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.14  E-value=0.13  Score=36.89  Aligned_cols=95  Identities=20%  Similarity=0.245  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEc---------CCCccccccCCCccEEE
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAID---------YTKENIEDLPEKFDVVF  219 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~---------~~~~~~~~~~~~~d~vi  219 (255)
                      -.|++|+|.|-+.-+|.=.+.++.. .++.|.....+.... +  ..+++..+.         ...+...+.....|++|
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~-~gaTVt~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLAN-DGATVYSVDVNNIQK-F--TRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHT-TSCEEEEECSSEEEE-E--ESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             CCCCEEEEECCccccHHHHHHHHHH-CCCEEEEeccccccc-c--ccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            4689999999888899977777776 489888776432111 0  011111111         11111111122578888


Q ss_pred             ECCCCccceeeeeeccccCCceEEEEeecc
Q 025278          220 DAVGKMCISIVYQKCDKFQEKSLINFGLFR  249 (255)
Q Consensus       220 d~~G~~~~~~~~~~~~~~~~G~~v~~G~~~  249 (255)
                      -++|.+... .-..+.+ ++..++-+|...
T Consensus       103 savG~p~~~-i~~d~ik-~GavvIDvGi~~  130 (171)
T d1edza1         103 TGVPSENYK-FPTEYIK-EGAVCINFACTK  130 (171)
T ss_dssp             ECCCCTTCC-BCTTTSC-TTEEEEECSSSC
T ss_pred             EccCCCccc-cChhhcc-cCceEeeccccc
Confidence            888876531 2234454 555666666543

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.12  E-value=1.1  Score=35.22  Aligned_cols=59  Identities=20%  Similarity=0.303  Sum_probs=45.6

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe---cChhhHHHHHHcCCCEEE
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT---SSTAKLDLLRSLGADLAI  201 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~---~~~~~~~~~~~~g~~~v~  201 (255)
                      +.+...++.+...+|...+|..|++.+.+++.+ |.+.+++.   .++.|++..+.+|++.+.
T Consensus        55 a~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~-g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~  116 (320)
T d1z7wa1          55 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAK-GYKLIITMPASMSTERRIILLAFGVELVL  116 (320)
T ss_dssp             HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHH-TCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HHHcCCCCCCCceEEeeCCchHHHHHHHHHHhh-ccceEEeehhhhhhhhhhhhhccCcceEE
Confidence            344556667766666666999999999999996 88887775   466788888999997654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.25  Score=38.24  Aligned_cols=36  Identities=11%  Similarity=0.247  Sum_probs=30.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      ++..+|+|+| +|.-|+.++..++.. |.+|.+++.++
T Consensus         3 ~~~~kViVIG-aG~aGL~aA~~L~~~-G~~V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIG-SGVSGLAAARQLQSF-GMDVTLLEARD   38 (449)
T ss_dssp             SCCCEEEEEC-CBHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CCCCcEEEEC-CCHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            4456799999 899999999988885 99999987654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=88.90  E-value=0.21  Score=37.82  Aligned_cols=33  Identities=18%  Similarity=0.334  Sum_probs=27.8

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      .|+|+| +|+.|++++..+... |.+|.+++++++
T Consensus         6 DViIIG-aG~aGl~aA~~la~~-G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIG-AGAAGLFCAAQLAKL-GKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             cEEEEC-cCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            488999 899999988888774 999999997653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.82  E-value=0.21  Score=39.47  Aligned_cols=33  Identities=15%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             EE-EEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          153 SI-LVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       153 ~V-lI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .| ||+||+|-+|...+..+... |.+|+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~-g~~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEK-GYEVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHC-cCEEEEEECCC
Confidence            56 99999999999999988884 99999999743

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.76  E-value=0.33  Score=38.52  Aligned_cols=99  Identities=15%  Similarity=0.070  Sum_probs=59.1

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC---EEEcCCCccc----cccCCC
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD---LAIDYTKENI----EDLPEK  214 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~----~~~~~~  214 (255)
                      ..+++|++||=.+ + +.|..++.+|+. +..+|+.++.+++.++.+++    .|..   .++..+..++    ....+.
T Consensus       141 ~~~~~g~~VLDl~-~-g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~  217 (324)
T d2as0a2         141 KWVQPGDRVLDVF-T-YTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEK  217 (324)
T ss_dssp             GGCCTTCEEEETT-C-TTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             hhcCCCCeeeccc-C-cccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCC
Confidence            4467899998776 3 456666667765 45689999999998888743    4432   2233222111    112457


Q ss_pred             ccEEEECCCC----cc-----------ceeeeeeccccCCceEEEEeec
Q 025278          215 FDVVFDAVGK----MC-----------ISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       215 ~d~vid~~G~----~~-----------~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      +|+||--...    ..           ....+..+++ ++|+++.+...
T Consensus       218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~-pGG~lv~~s~s  265 (324)
T d2as0a2         218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK-DGGILVTCSCS  265 (324)
T ss_dssp             EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE-EEEEEEEEECC
T ss_pred             CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEEeCC
Confidence            9999843221    11           1222345666 78988887654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=88.75  E-value=0.15  Score=39.57  Aligned_cols=45  Identities=18%  Similarity=0.320  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL  195 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~  195 (255)
                      ...++|||+|  |+-|..+..+++.....++.+++.+++=.+.++++
T Consensus        74 ~~p~~vLiiG--gG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~  118 (274)
T d1iy9a_          74 PNPEHVLVVG--GGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKF  118 (274)
T ss_dssp             SSCCEEEEES--CTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHH
T ss_pred             CCcceEEecC--CCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHh
Confidence            4567999998  34466666777763346788999999888887664

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=88.69  E-value=0.22  Score=37.31  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=26.5

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .|+|+| +|+.|++++..+... |.+|+++++++
T Consensus         4 DViIIG-aG~aGl~aA~~la~~-G~~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIG-GGPSGLMAAIGAAEE-GANVLLLDKGN   35 (251)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            388999 899999888777774 99999998654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.50  E-value=0.4  Score=34.13  Aligned_cols=43  Identities=16%  Similarity=0.131  Sum_probs=36.1

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGA  197 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~  197 (255)
                      +|-|+| .|.+|...+.-+.. .|.+|++.+++++|.+.+.+.++
T Consensus         3 kIGvIG-lG~MG~~ma~~L~~-~G~~V~~~dr~~~~~~~l~~~~~   45 (178)
T d1pgja2           3 DVGVVG-LGVMGANLALNIAE-KGFKVAVFNRTYSKSEEFMKANA   45 (178)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHTT
T ss_pred             EEEEEe-ehHHHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHcCC
Confidence            478899 99999998877777 49999999999999988866553

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.42  E-value=0.12  Score=37.36  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=28.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS  184 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~  184 (255)
                      ++..|+|+| .|+.|+.++..+.++ |.+++++++
T Consensus         4 k~~dVvIIG-GGpaGl~AA~~~ar~-g~~v~iie~   36 (190)
T d1trba1           4 KHSKLLILG-SGPAGYTAAVYAARA-NLQPVLITG   36 (190)
T ss_dssp             EEEEEEEEC-CSHHHHHHHHHHHTT-TCCCEEECC
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHc-CCceEEEEe
Confidence            456799999 899999999888885 999999864

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.41  E-value=0.36  Score=35.44  Aligned_cols=67  Identities=16%  Similarity=0.233  Sum_probs=42.6

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC-EEEcCCCccccccCCCccEEEEC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD-LAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      -.|++||=.| +| .|.+++.++.. +..+|++++.+++..+.+++    ++.. .++..   +..+..+.+|+||-.
T Consensus        45 l~g~~vLDlg-~G-tG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~---d~~~~~~~fD~Vi~n  116 (201)
T d1wy7a1          45 IEGKVVADLG-AG-TGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIG---DVSEFNSRVDIVIMN  116 (201)
T ss_dssp             STTCEEEEET-CT-TCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEES---CGGGCCCCCSEEEEC
T ss_pred             CCCCEEEECc-Cc-chHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEEC---chhhhCCcCcEEEEc
Confidence            4678898887 43 35555555554 45689999999998888754    3433 23322   223345679999843

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.40  E-value=0.24  Score=36.43  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=27.2

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .|+|+| +|..|+.++..+... |.+|.++++++
T Consensus         7 DviViG-aG~~Gl~~A~~La~~-G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLG-TGITECILSGLLSVD-GKKVLHIDKQD   38 (297)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHC-CCCEEEEcCCC
Confidence            388999 899999988888774 99999999865

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=88.37  E-value=1.1  Score=34.90  Aligned_cols=58  Identities=22%  Similarity=0.312  Sum_probs=44.0

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe---cChhhHHHHHHcCCCEEE
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT---SSTAKLDLLRSLGADLAI  201 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~---~~~~~~~~~~~~g~~~v~  201 (255)
                      +.+...+.++++|+... +|..|++++..|+.+ |.+.+++.   .++.|.+..+.+|++.+.
T Consensus        52 a~~~g~~~~~~~vv~~S-sGN~g~a~A~~a~~~-G~~~~i~~p~~~~~~k~~~~~~~GA~vv~  112 (310)
T d1y7la1          52 AEKDGTLTKGKEIVDAT-SGNTGIALAYVAAAR-GYKITLTMPETMSLERKRLLCGLGVNLVL  112 (310)
T ss_dssp             HHHTTSSCTTCEEEESC-CSHHHHHHHHHHHHH-TCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HHHcCCCCCCceeeeec-CCCchHHHHHHHHHh-hccccccchhhhhhhhhhhHHHhCCceEe
Confidence            33455667787766555 999999999999996 88877664   356778888999987764

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=88.34  E-value=0.37  Score=34.27  Aligned_cols=72  Identities=21%  Similarity=0.236  Sum_probs=41.4

Q ss_pred             CCEEEEEcCCchHHHH--HHHHHHHhcC---CcEEEEecChhhHHHH--------HHcCCCEEEcCCCccccccCCCccE
Q 025278          151 GKSILVLGGAGGVGTM--VIQLAKHVFG---ASKVAATSSTAKLDLL--------RSLGADLAIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~--a~~~a~~~~g---~~vi~~~~~~~~~~~~--------~~~g~~~v~~~~~~~~~~~~~~~d~  217 (255)
                      .-.|.|.| +|.+|..  ...+++....   .+++.+|.+++|++..        ...+.+..+.... +..+..++.|+
T Consensus         3 ~~KI~iIG-aGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~eal~~AD~   80 (167)
T d1u8xx1           3 SFSIVIAG-GGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATT-DPEEAFTDVDF   80 (167)
T ss_dssp             CEEEEEEC-TTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEES-CHHHHHSSCSE
T ss_pred             CceEEEEC-CChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecC-ChhhccCCCCE
Confidence            34688889 5666532  3344433222   3788889999987632        2234332222211 22333469999


Q ss_pred             EEECCCC
Q 025278          218 VFDAVGK  224 (255)
Q Consensus       218 vid~~G~  224 (255)
                      |+.++|.
T Consensus        81 Vvitag~   87 (167)
T d1u8xx1          81 VMAHIRV   87 (167)
T ss_dssp             EEECCCT
T ss_pred             EEECCCc
Confidence            9999984

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.32  E-value=0.27  Score=37.18  Aligned_cols=33  Identities=27%  Similarity=0.272  Sum_probs=27.2

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecChh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSSTA  187 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~~  187 (255)
                      .|+|+| +|..|++++..++.. |. +|.+++++++
T Consensus         3 ~V~IvG-aG~aGl~~A~~L~~~-Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAG-AGIGGLSCALALHQA-GIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEESSSS
T ss_pred             EEEEEC-cCHHHHHHHHHHHhC-CCCeEEEEeCCCC
Confidence            689999 899999999999885 85 7778777543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.28  E-value=0.2  Score=38.12  Aligned_cols=32  Identities=28%  Similarity=0.368  Sum_probs=27.8

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      +|+|+| +|..|+.++..++.. |.+|.+++.++
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~~~-G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVG-GGISGLAVAHHLRSR-GTDAVLLESSA   33 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHHTT-TCCEEEECSSS
T ss_pred             eEEEEC-CCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            589999 899999999888884 99999998754

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.14  E-value=0.33  Score=37.84  Aligned_cols=33  Identities=30%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT  183 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~  183 (255)
                      -.|.+|+|.| .|.+|..+++.+... |+++++++
T Consensus        34 L~gktvaIqG-fGnVG~~~A~~L~e~-Gakvv~vs   66 (293)
T d1hwxa1          34 FGDKTFAVQG-FGNVGLHSMRYLHRF-GAKCVAVG   66 (293)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEE
Confidence            3678999999 999999999999996 99999886

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=88.10  E-value=0.43  Score=35.51  Aligned_cols=88  Identities=15%  Similarity=0.174  Sum_probs=52.1

Q ss_pred             EEEEEcCCchHHHH-HHHHHHHhcCCcEEEE-ecChhhHHHH-HHcCCC--EEEcCCCcccccc--CCCccEEEECCCCc
Q 025278          153 SILVLGGAGGVGTM-VIQLAKHVFGASKVAA-TSSTAKLDLL-RSLGAD--LAIDYTKENIEDL--PEKFDVVFDAVGKM  225 (255)
Q Consensus       153 ~VlI~ga~g~~G~~-a~~~a~~~~g~~vi~~-~~~~~~~~~~-~~~g~~--~v~~~~~~~~~~~--~~~~d~vid~~G~~  225 (255)
                      +|.|+| +|.+|.- .+...+...+.+++++ ++++++.+.+ +++|.+  .+..++  ++.++  ...+|+|+-++...
T Consensus        35 riaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~--d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          35 GYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYS--NFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             EEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSS--SGGGGGGCTTCCEEEECSCGG
T ss_pred             EEEEEc-CcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccC--chhhhcccccceeeeeccchh
Confidence            789999 8999963 4444444457788855 6788776654 677743  222232  23332  24789998887765


Q ss_pred             cceeeeeeccccCCceEEEE
Q 025278          226 CISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       226 ~~~~~~~~~~~~~~G~~v~~  245 (255)
                      .-...+.++++  .|+=+++
T Consensus       112 ~H~~~~~~al~--~gk~v~~  129 (221)
T d1h6da1         112 LHAEFAIRAFK--AGKHVMC  129 (221)
T ss_dssp             GHHHHHHHHHH--TTCEEEE
T ss_pred             hhhhHHHHhhh--cchhhhc
Confidence            54444455443  3444433

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=87.99  E-value=0.24  Score=36.76  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=26.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCC-cEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGA-SKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~-~vi~~~~~~  186 (255)
                      .|+|+| +|..|+.++..++.. |. +|.++++++
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~~~-G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVG-AGMSGISAAKRLSEA-GITDLLILEATD   34 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHHHT-TCCCEEEECSSS
T ss_pred             CEEEEC-CcHHHHHHHHHHHhC-CCCcEEEEECCC
Confidence            489999 899999988888875 85 698888764

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.93  E-value=0.29  Score=36.13  Aligned_cols=32  Identities=16%  Similarity=0.364  Sum_probs=27.0

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .|+|+| +|+.|+.++..|..+ |.+|.+++..+
T Consensus         7 DviVIG-~GpAGl~aA~~aa~~-G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIG-GGPAGYVAAIKAAQL-GFNTACVEKRG   38 (233)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCcEEEEEecC
Confidence            478999 899999988888774 99999998654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.88  E-value=0.31  Score=38.56  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=28.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATS  184 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~  184 (255)
                      ++|||+||+|-+|...+..+... |.+|+++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~-g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEA-GYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHC-cCEEEEEEC
Confidence            68999999999999988888874 899999863

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.88  E-value=0.4  Score=34.75  Aligned_cols=39  Identities=23%  Similarity=0.245  Sum_probs=32.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS  194 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~  194 (255)
                      +|.|+| .|-+|+..+.++ + .|.+|+.+|.++++.+.+++
T Consensus         2 kI~ViG-lG~vGl~~a~~~-a-~g~~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAG-SGYVGLSLGVLL-S-LQNEVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEEC-CSHHHHHHHHHH-T-TTSEEEEECSCHHHHHHHHT
T ss_pred             EEEEEC-CChhHHHHHHHH-H-CCCcEEEEECCHHHHHHHhh
Confidence            688998 999999877655 4 49999999999998887764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.80  E-value=1.2  Score=30.58  Aligned_cols=71  Identities=21%  Similarity=0.276  Sum_probs=42.0

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEecChh--hHH-HHHHc-------CC-CEEEcCCCccccccCCCccEEE
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFG--ASKVAATSSTA--KLD-LLRSL-------GA-DLAIDYTKENIEDLPEKFDVVF  219 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g--~~vi~~~~~~~--~~~-~~~~~-------g~-~~v~~~~~~~~~~~~~~~d~vi  219 (255)
                      .|.|+||+|.+|..++.++... +  .+++.++.+++  +.+ .+.++       .. ..+.....++.. ..++.|+|+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~-~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~-~l~~aDvVV   79 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKE-PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLR-IIDESDVVI   79 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTC-TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG-GGTTCSEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhC-CcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHH-HhccceEEE
Confidence            5889997799999988887764 5  36677776642  222 11111       11 112111122222 346899999


Q ss_pred             ECCCCc
Q 025278          220 DAVGKM  225 (255)
Q Consensus       220 d~~G~~  225 (255)
                      =+.|.+
T Consensus        80 itAG~~   85 (145)
T d1hyea1          80 ITSGVP   85 (145)
T ss_dssp             ECCSCC
T ss_pred             Eecccc
Confidence            999844

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.69  E-value=0.29  Score=34.75  Aligned_cols=30  Identities=17%  Similarity=0.317  Sum_probs=26.3

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEec
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATS  184 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~  184 (255)
                      .|+|+| +|+.|+.++..|.+. |.++.++++
T Consensus         3 DViIIG-gGpaGl~AAi~aar~-G~~v~iie~   32 (184)
T d1fl2a1           3 DVLIVG-SGPAGAAAAIYSARK-GIRTGLMGE   32 (184)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTT-TCCEEEECS
T ss_pred             cEEEEC-cCHHHHHHHHHHHHc-CCeEEEEEE
Confidence            488999 899999999988884 999999975

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.67  E-value=1.2  Score=29.84  Aligned_cols=62  Identities=23%  Similarity=0.244  Sum_probs=45.9

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      .++..++..-+.+++.-..-..-++++++++.++..++++...+++..+.++++|++.++++
T Consensus        57 ~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p  118 (132)
T d1lssa_          57 TLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSP  118 (132)
T ss_dssp             HHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECH
T ss_pred             hhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECH
Confidence            34566776667666543345566778888888755567777888888899999999999875

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.57  E-value=0.34  Score=38.14  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=30.0

Q ss_pred             CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChh
Q 025278          151 GKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTA  187 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~  187 (255)
                      .+.|+|+| +|..|+.++..+... |.+|.+++.++.
T Consensus         2 ~KKI~IIG-aG~sGL~aA~~L~k~-G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVG-AGFSGAVIGRQLAEK-GHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEEESSSS
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHhC-CCCEEEEECCCC
Confidence            46899999 899999999998874 899999987653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.32  E-value=0.72  Score=32.03  Aligned_cols=73  Identities=15%  Similarity=0.065  Sum_probs=43.9

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH-HHH-------cCCCEEEcCCCccccccCCCccEEEEC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL-LRS-------LGADLAIDYTKENIEDLPEKFDVVFDA  221 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~-~~~-------~g~~~v~~~~~~~~~~~~~~~d~vid~  221 (255)
                      |...|.|+| +|.+|...+.++...+=.+++.+|.++++.+- +..       .+....+.. ..+. +..++.|+|+-+
T Consensus         2 p~~KI~IIG-aG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~-~~~~-~~~~~advvvit   78 (150)
T d1t2da1           2 PKAKIVLVG-SGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-SNTY-DDLAGADVVIVT   78 (150)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-ECCG-GGGTTCSEEEEC
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEe-cccc-cccCCCcEEEEe
Confidence            456899999 79999888777766323466677877765432 211       122211111 1122 234689999999


Q ss_pred             CCCc
Q 025278          222 VGKM  225 (255)
Q Consensus       222 ~G~~  225 (255)
                      .|.+
T Consensus        79 ag~~   82 (150)
T d1t2da1          79 AGFT   82 (150)
T ss_dssp             CSCS
T ss_pred             cccc
Confidence            9944

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=87.30  E-value=0.31  Score=35.68  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=27.2

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      .|+|+| +|+.|+.++..|+.+ |.+|.+++++
T Consensus         4 DvvVIG-~G~aG~~aA~~a~~~-G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIG-GGSGGIASINRAAMY-GQKCALIEAK   34 (217)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTT-TCCEEEEESS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCEEEEEecc
Confidence            378999 899999999999985 9999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.16  E-value=0.38  Score=33.29  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=29.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEec
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATS  184 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~  184 (255)
                      -.|++|||.| +|.+|.--+..+... |++|+++..
T Consensus        11 l~gkrvLViG-gG~va~~ka~~Ll~~-GA~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIG-GGEVGLTRLYKLMPT-GCKLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEE-ESHHHHHHHHHHGGG-TCEEEEEEE
T ss_pred             eCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeC
Confidence            4689999999 799999999988885 999998854

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.12  E-value=2.1  Score=32.94  Aligned_cols=59  Identities=22%  Similarity=0.360  Sum_probs=43.9

Q ss_pred             HHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe---cChhhHHHHHHcCCCEE
Q 025278          140 YEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT---SSTAKLDLLRSLGADLA  200 (255)
Q Consensus       140 ~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~---~~~~~~~~~~~~g~~~v  200 (255)
                      +++++....+++.+|+... +|..|.+++..++.+ |.+.+++.   .++.+....+.+|++.+
T Consensus        50 ~~a~~~g~~~~~~~vv~as-sGn~g~a~A~~a~~~-g~~~~i~~p~~~~~~k~~~~~~~ga~v~  111 (302)
T d1fcja_          50 WDAEKRGVLKPGVELVEPT-NGNTGIALAYVAAAR-GYKLTLTMPETMSIERRKLLKALGANLV  111 (302)
T ss_dssp             HHHHHHTCCCTTCEEEEEC-SSHHHHHHHHHHHHH-TCCEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             HHHHHcCCCCCCceEEEec-cccchhHHHHHHHHh-ccCCceEEeecCcHHHHHHHHHhccceE
Confidence            3345556677777766554 999999999999986 88777664   46677778888998765

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.11  E-value=2  Score=30.64  Aligned_cols=96  Identities=18%  Similarity=0.127  Sum_probs=57.8

Q ss_pred             HhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC----EEEcCCCccccccCCCc
Q 025278          144 ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD----LAIDYTKENIEDLPEKF  215 (255)
Q Consensus       144 ~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~----~v~~~~~~~~~~~~~~~  215 (255)
                      +.....++++||=.| + +.|..+..+++.  +.++++++.+++..+.+++    .+..    .++..+.... ...+.+
T Consensus        46 ~~l~~~~~~~VLDiG-c-G~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~-~~~~~f  120 (194)
T d1dusa_          46 ENVVVDKDDDILDLG-C-GYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VKDRKY  120 (194)
T ss_dssp             HHCCCCTTCEEEEET-C-TTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CTTSCE
T ss_pred             HhCCcCCCCeEEEEe-e-cCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh-hccCCc
Confidence            556778899999988 3 447777777763  7799999999988777753    2321    2222221111 113479


Q ss_pred             cEEEECCC---Ccc----ceeeeeeccccCCceEEEE
Q 025278          216 DVVFDAVG---KMC----ISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       216 d~vid~~G---~~~----~~~~~~~~~~~~~G~~v~~  245 (255)
                      |+|+-...   ...    ....+.+.++ ++|+++++
T Consensus       121 D~Ii~~~p~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~  156 (194)
T d1dusa_         121 NKIITNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVV  156 (194)
T ss_dssp             EEEEECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             eEEEEcccEEecchhhhhHHHHHHHhcC-cCcEEEEE
Confidence            99995322   111    1233345566 78887654

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=86.87  E-value=0.41  Score=33.60  Aligned_cols=77  Identities=19%  Similarity=0.129  Sum_probs=47.2

Q ss_pred             EEEEEcCCchHHHH-HHHHHHHhcCCcEEEE-ecChhhHHH-HHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          153 SILVLGGAGGVGTM-VIQLAKHVFGASKVAA-TSSTAKLDL-LRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       153 ~VlI~ga~g~~G~~-a~~~a~~~~g~~vi~~-~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      +|.|+| +|.+|.- .....+...+.+++++ ++++++.+. +++++... ++    +..+..+.+|+|+-|+....-..
T Consensus         3 ri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~-~~----~~~~l~~~~D~V~I~tp~~~h~~   76 (164)
T d1tlta1           3 RIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPY-AD----SLSSLAASCDAVFVHSSTASHFD   76 (164)
T ss_dssp             EEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCB-CS----SHHHHHTTCSEEEECSCTTHHHH
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccc-cc----cchhhhhhcccccccccchhccc
Confidence            588999 8999964 5566655557777755 566666554 46777642 22    22223346888888876554444


Q ss_pred             eeeecc
Q 025278          230 VYQKCD  235 (255)
Q Consensus       230 ~~~~~~  235 (255)
                      .+..++
T Consensus        77 ~~~~al   82 (164)
T d1tlta1          77 VVSTLL   82 (164)
T ss_dssp             HHHHHH
T ss_pred             cccccc
Confidence            444444

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=86.79  E-value=0.81  Score=31.39  Aligned_cols=71  Identities=21%  Similarity=0.111  Sum_probs=42.5

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHH-HHHcC-------CC-EEEcCCCccccccCCCccEEEECC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDL-LRSLG-------AD-LAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~-~~~~g-------~~-~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      .+|.|+| +|.+|..++.++...+-.+++.++.++++.+- +..+.       .. .+..  ..++.+ ..+.|+|+-++
T Consensus         2 ~KI~IIG-aG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~--~~d~~~-~~~advvvita   77 (142)
T d1uxja1           2 KKISIIG-AGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG--TNNYAD-TANSDVIVVTS   77 (142)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE--ESCGGG-GTTCSEEEECC
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEe--cCcHHH-hcCCCEEEEee
Confidence            3688999 79999987766655333578888887765432 22221       11 1111  112222 35899999999


Q ss_pred             CCcc
Q 025278          223 GKMC  226 (255)
Q Consensus       223 G~~~  226 (255)
                      |.+.
T Consensus        78 g~~~   81 (142)
T d1uxja1          78 GAPR   81 (142)
T ss_dssp             SCC-
T ss_pred             eccC
Confidence            9543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.55  E-value=0.82  Score=33.61  Aligned_cols=98  Identities=10%  Similarity=0.008  Sum_probs=60.7

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcC----CC--EEEcCCCccccccCCCccEEEE
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLG----AD--LAIDYTKENIEDLPEKFDVVFD  220 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g----~~--~v~~~~~~~~~~~~~~~d~vid  220 (255)
                      ...++.+||=+| + +.|..+..+++. .+.++++++.+++-++.+++.-    ..  ..+..+-.++....+.+|+|+.
T Consensus        57 ~~~~~~~vLDiG-c-G~G~~~~~l~~~-~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~  133 (222)
T d2ex4a1          57 NKTGTSCALDCG-A-GIGRITKRLLLP-LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI  133 (222)
T ss_dssp             -CCCCSEEEEET-C-TTTHHHHHTTTT-TCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCCCCEEEEec-c-CCCHhhHHHHHh-cCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            356778999998 4 458888887766 3778999999999888886532    21  2233322233222457999996


Q ss_pred             CCCC-----c---cceeeeeeccccCCceEEEEeec
Q 025278          221 AVGK-----M---CISIVYQKCDKFQEKSLINFGLF  248 (255)
Q Consensus       221 ~~G~-----~---~~~~~~~~~~~~~~G~~v~~G~~  248 (255)
                      .-.-     +   .....+.+.++ ++|.+++.-..
T Consensus       134 ~~~l~h~~~~~~~~~l~~i~~~Lk-~~G~~~i~~~~  168 (222)
T d2ex4a1         134 QWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDNM  168 (222)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred             ccccccchhhhhhhHHHHHHHhcC-CcceEEEEEcc
Confidence            5331     1   12233455556 68888876543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.54  E-value=0.4  Score=35.05  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=26.3

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      |+|+| +|+.|+.++..|.++ |.+|.++++.
T Consensus         6 viVIG-~GpaGl~aA~~aar~-G~kV~vIEk~   35 (223)
T d1ebda1           6 TLVVG-AGPGGYVAAIRAAQL-GQKVTIVEKG   35 (223)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             EEEEC-CCHHHHHHHHHHHHC-CCEEEEEecC
Confidence            78889 899999999999885 9999999764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.44  E-value=0.38  Score=35.33  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=27.4

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      .++|+| +|+.|+.++..|+.+ |.+|.+++..
T Consensus         7 DlvVIG-~GpaGl~aA~~aa~~-G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIG-GGPGGYVAAIRAGQL-GIPTVLVEGQ   37 (220)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHH-TCCEEEECSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCcEEEEecC
Confidence            478999 899999999999986 9999999864

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=86.19  E-value=0.81  Score=34.39  Aligned_cols=94  Identities=15%  Similarity=0.106  Sum_probs=56.4

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH----cCCC-EE--EcCCCc-cccccCCCccEE
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS----LGAD-LA--IDYTKE-NIEDLPEKFDVV  218 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~----~g~~-~v--~~~~~~-~~~~~~~~~d~v  218 (255)
                      -.+++++||=.| +|. |..+..+++. +..+++++|.+++-++.+++    .+.. .+  +..+.. ......+.+|+|
T Consensus        21 ~~~~~~~VLDlG-CG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V   97 (252)
T d1ri5a_          21 YTKRGDSVLDLG-CGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI   97 (252)
T ss_dssp             HCCTTCEEEEET-CTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             hCCCcCEEEEec-ccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEE
Confidence            367899999998 655 6667788876 45689999999998888753    3321 11  111111 111123469999


Q ss_pred             EECCCCcc----------ceeeeeeccccCCceEEE
Q 025278          219 FDAVGKMC----------ISIVYQKCDKFQEKSLIN  244 (255)
Q Consensus       219 id~~G~~~----------~~~~~~~~~~~~~G~~v~  244 (255)
                      +-.-.-..          ....+.+.++ ++|+++.
T Consensus        98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-~gG~~i~  132 (252)
T d1ri5a_          98 SSQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIM  132 (252)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEE
T ss_pred             EEcceeeecCCCHHHHHHHHHHHhceeC-CCCEEEE
Confidence            85433211          1222345566 7898765

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=86.14  E-value=0.88  Score=33.52  Aligned_cols=69  Identities=20%  Similarity=0.245  Sum_probs=45.6

Q ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC--EEEcCCCccccccCCCccEEEE
Q 025278          147 AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD--LAIDYTKENIEDLPEKFDVVFD  220 (255)
Q Consensus       147 ~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~d~vid  220 (255)
                      ....+++||=+| +| .|..+..+++.  +.+|++++.+++..+.+++...+  ..+..+..+.. ..+.+|+|+-
T Consensus        17 ~~~~~~~VLDiG-cG-~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~   87 (225)
T d2p7ia1          17 PFFRPGNLLELG-SF-KGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVL   87 (225)
T ss_dssp             GGCCSSCEEEES-CT-TSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEE
T ss_pred             hhCCCCcEEEEe-CC-CcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccc
Confidence            344567899888 44 48887777764  78999999999999998754322  22333222222 2457999984

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=86.11  E-value=0.85  Score=31.50  Aligned_cols=70  Identities=23%  Similarity=0.215  Sum_probs=43.2

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHH-HH-------cCCCEEEcCCCccccccCCCccEEEECC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLL-RS-------LGADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~-~~-------~g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      ++|.|+| +|.+|..++..+...+ ..+++.+|.++++.+-. .+       ++.+..+..  .++++ .++.|+|+=+.
T Consensus         2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~--~d~~~-l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--NDWAA-LADADVVISTL   77 (146)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SCGGG-GTTCSEEEECC
T ss_pred             CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceec--cCHHH-hccccEEEEec
Confidence            5788999 7999988777666532 24677888888764321 11       122222211  12222 46899999998


Q ss_pred             CCc
Q 025278          223 GKM  225 (255)
Q Consensus       223 G~~  225 (255)
                      |.+
T Consensus        78 G~~   80 (146)
T d1hyha1          78 GNI   80 (146)
T ss_dssp             SCG
T ss_pred             ccc
Confidence            854

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=86.05  E-value=0.45  Score=36.34  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT  183 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~  183 (255)
                      -.|.+|+|.| .|.+|..+++.+... |++++++.
T Consensus        34 l~g~~v~IQG-fGnVG~~~a~~L~e~-Gakvvavs   66 (255)
T d1bgva1          34 LVGKTVALAG-FGNVAWGAAKKLAEL-GAKAVTLS   66 (255)
T ss_dssp             STTCEEEECC-SSHHHHHHHHHHHHH-TCEEEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEEe
Confidence            4789999999 999999999999996 99999774

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=85.89  E-value=0.45  Score=35.20  Aligned_cols=32  Identities=22%  Similarity=0.231  Sum_probs=27.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      -|+|+| +|+.|+.++..|..+ |.+|.+++..+
T Consensus         8 DviIIG-~GPaGlsaA~~aa~~-G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLG-GGPGGYSAAFAAADE-GLKVAIVERYK   39 (229)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence            478999 899999999999885 99999998654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.76  E-value=1.6  Score=28.89  Aligned_cols=71  Identities=8%  Similarity=0.074  Sum_probs=48.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccc---cc-cCCCccEEEECCCCccc
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENI---ED-LPEKFDVVFDAVGKMCI  227 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~-~~~~~d~vid~~G~~~~  227 (255)
                      +.++|.| .|.+|..++..++   +..+++++.++++.+.++..|... +..+..+.   .+ ..+.++.++=++.....
T Consensus         1 kHivI~G-~g~~g~~l~~~L~---~~~i~vi~~d~~~~~~~~~~~~~~-i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~   75 (129)
T d2fy8a1           1 RHVVICG-WSESTLECLRELR---GSEVFVLAEDENVRKKVLRSGANF-VHGDPTRVSDLEKANVRGARAVIVNLESDSE   75 (129)
T ss_dssp             CCEEEES-CCHHHHHHHHTSC---GGGEEEEESCTTHHHHHHHTTCEE-EESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHc---CCCCEEEEcchHHHHHHHhcCccc-cccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence            3578888 8999988776653   557888899999999888888754 43433221   11 13578888887775443

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=85.72  E-value=0.79  Score=31.55  Aligned_cols=71  Identities=17%  Similarity=0.146  Sum_probs=43.5

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHH-H---HH----cCCCEEEcCCCccccccCCCccEEEECC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDL-L---RS----LGADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~-~---~~----~g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      .+|.|+| +|.+|..++..+...+ ..+++.+|.++++.+- +   +.    .+...+...  .++++ .++.|+|+-+.
T Consensus         2 ~Ki~IIG-aG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~~~-~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIG-AGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDPEI-CRDADMVVITA   77 (143)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCGGG-GTTCSEEEECC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC--CCHHH-hhCCcEEEEec
Confidence            4688999 6999999876666532 2367788888876532 1   11    122222211  22222 45789999999


Q ss_pred             CCcc
Q 025278          223 GKMC  226 (255)
Q Consensus       223 G~~~  226 (255)
                      |.+.
T Consensus        78 G~~~   81 (143)
T d1llda1          78 GPRQ   81 (143)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.53  E-value=1.8  Score=29.10  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=25.4

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHH----HHhcCCcEEEEecCh
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLA----KHVFGASKVAATSST  186 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a----~~~~g~~vi~~~~~~  186 (255)
                      +.+++++|.| +|.+|.=++..+    +.+ |.+|..+.+++
T Consensus        35 ~~~k~i~IvG-gG~~G~E~A~~l~~~~~~~-g~~Vt~i~~~~   74 (137)
T d1m6ia2          35 REVKSITIIG-GGFLGSELACALGRKARAL-GTEVIQLFPEK   74 (137)
T ss_dssp             HHCSEEEEEC-CSHHHHHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             hcCCEEEEEC-CCHHHHHHHHHHHHHHHhc-CCEEEEecccc
Confidence            4578999999 899996544333    343 88998887644

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.28  E-value=0.88  Score=35.91  Aligned_cols=53  Identities=15%  Similarity=0.224  Sum_probs=41.3

Q ss_pred             HHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH
Q 025278          139 AYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR  193 (255)
Q Consensus       139 a~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~  193 (255)
                      ....++..+++++++|+=+| + |.|..+.++|+..+..++++++.+++..+.++
T Consensus       140 ~~~~~~~~~l~~~~~vlD~G-c-G~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~  192 (328)
T d1nw3a_         140 VAQMIDEIKMTDDDLFVDLG-S-GVGQVVLQVAAATNCKHHYGVEKADIPAKYAE  192 (328)
T ss_dssp             HHHHHHHSCCCTTCEEEEET-C-TTSHHHHHHHHHCCCSEEEEEECSHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEcC-C-CCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            34456788899999999888 4 56989999998853447999999998776664

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.24  E-value=0.52  Score=34.36  Aligned_cols=30  Identities=20%  Similarity=0.334  Sum_probs=26.2

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      |+|+| +|+.|+.++..|.+. |.+|.+++..
T Consensus         6 viIIG-gGpAGl~aA~~aar~-G~~V~viE~~   35 (229)
T d3lada1           6 VIVIG-AGPGGYVAAIKSAQL-GLKTALIEKY   35 (229)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHH-TCCEEEEECC
T ss_pred             EEEEC-cCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            78889 899999999988885 9999999853

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=85.20  E-value=0.98  Score=34.02  Aligned_cols=97  Identities=15%  Similarity=0.179  Sum_probs=57.5

Q ss_pred             hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHH----HHcCCC-E--EEcCCCccccccCCCccE
Q 025278          145 RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLL----RSLGAD-L--AIDYTKENIEDLPEKFDV  217 (255)
Q Consensus       145 ~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~----~~~g~~-~--v~~~~~~~~~~~~~~~d~  217 (255)
                      ...+...++||=+|  ++.|..+..++++..+.++++++.. +-++.+    .+.|.. .  .+..+-  +.....++|+
T Consensus        75 ~~d~~~~~~VLDvG--cG~G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~--~~~~~~~~D~  149 (253)
T d1tw3a2          75 AYDWTNVRHVLDVG--GGKGGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVEGDF--FEPLPRKADA  149 (253)
T ss_dssp             HSCCTTCSEEEEET--CTTSHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEECCT--TSCCSSCEEE
T ss_pred             hcCCccCCEEEEeC--CCCCHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHHhhcccchhhccccc--hhhcccchhh
Confidence            34566778999888  3568899999998667888888863 334333    333421 1  121111  1223457999


Q ss_pred             EEECCCC-----c---cceeeeeeccccCCceEEEEee
Q 025278          218 VFDAVGK-----M---CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       218 vid~~G~-----~---~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      |+-..--     .   .....+.+.++ ++|++++.-.
T Consensus       150 v~~~~vlh~~~d~~~~~~L~~~~~~Lk-PGG~l~i~e~  186 (253)
T d1tw3a2         150 IILSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHER  186 (253)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEEC
T ss_pred             eeeccccccCCchhhHHHHHHHHHhcC-CCcEEEEEec
Confidence            9854321     1   11233455666 7999988654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.17  E-value=0.48  Score=36.97  Aligned_cols=32  Identities=25%  Similarity=0.368  Sum_probs=28.1

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .|+|+| +|..|++++..++.. |..+++++.++
T Consensus         9 dV~IIG-AG~sGl~~a~~L~~~-G~~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVG-AGFSGLYALYRLREL-GRSVHVIETAG   40 (298)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CEEEEC-ccHHHHHHHHHHHhC-CCCEEEEEcCC
Confidence            689999 899999999999985 99999998754

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=85.16  E-value=0.3  Score=38.00  Aligned_cols=33  Identities=15%  Similarity=0.342  Sum_probs=27.5

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      ++|||+||+|-+|...+..+.. .|..+++++..
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~-~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQ-RGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTT-CTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHH-CcCEEEEecCc
Confidence            4799999999999999988887 48888776543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=85.05  E-value=0.48  Score=33.44  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=25.8

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT  183 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~  183 (255)
                      .+++|+|.| +|.+|+-++..++.+ +.++.++.
T Consensus         2 ~~~~VvIIG-gG~~G~e~A~~l~~~-g~~v~v~~   33 (185)
T d1q1ra1           2 ANDNVVIVG-TGLAGVEVAFGLRAS-GWEGNIRL   33 (185)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHT-TCCSEEEE
T ss_pred             CCCCEEEEC-CcHHHHHHHHHHHHc-CCceEEEE
Confidence            568999999 899999999888885 76655443

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=84.96  E-value=0.27  Score=34.97  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=46.5

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEE-ecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCccceeee
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAA-TSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISIVY  231 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~~~  231 (255)
                      +|.|+| +|.+|...+..++...+.+++++ ++++++.+   .  . .+..+  .+.....+.+|+|+.|++...-...+
T Consensus         5 rvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~--~-~~~~~--~~~~~~~~~~D~Vvi~tp~~~h~~~a   75 (170)
T d1f06a1           5 RVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---K--T-PVFDV--ADVDKHADDVDVLFLCMGSATDIPEQ   75 (170)
T ss_dssp             EEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---S--S-CEEEG--GGGGGTTTTCSEEEECSCTTTHHHHH
T ss_pred             eEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccccc---c--c-ccccc--hhhhhhccccceEEEeCCCcccHHHH
Confidence            689999 89999988888877557777765 44443321   1  1 12211  12333345789999988866544555


Q ss_pred             eeccc
Q 025278          232 QKCDK  236 (255)
Q Consensus       232 ~~~~~  236 (255)
                      .++++
T Consensus        76 ~~aL~   80 (170)
T d1f06a1          76 APKFA   80 (170)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            55553

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.75  E-value=0.48  Score=36.86  Aligned_cols=31  Identities=23%  Similarity=0.377  Sum_probs=26.7

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      |+|+| +|..|+.++..++.. |.+|++++.++
T Consensus         2 ViVIG-aG~aGL~aA~~L~~~-G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVG-GGISGMAAAKLLHDS-GLNVVVLEARD   32 (383)
T ss_dssp             EEEEC-CBHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             EEEEC-CCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            78999 899999988888885 99999998654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=84.69  E-value=0.89  Score=32.36  Aligned_cols=86  Identities=13%  Similarity=0.083  Sum_probs=51.9

Q ss_pred             EEEEEcCCchHHHH-HHHHHHHhcC-CcEEEE-ecChhhHHHH-HHcCCCEEEcCCCcccccc--CCCccEEEECCCCcc
Q 025278          153 SILVLGGAGGVGTM-VIQLAKHVFG-ASKVAA-TSSTAKLDLL-RSLGADLAIDYTKENIEDL--PEKFDVVFDAVGKMC  226 (255)
Q Consensus       153 ~VlI~ga~g~~G~~-a~~~a~~~~g-~~vi~~-~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~--~~~~d~vid~~G~~~  226 (255)
                      +|.|+| +|.+|.- .+...+.... .+++++ ++++++.+.+ ++++...+++.    +.+.  ...+|+|+-|+....
T Consensus         5 rigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~----~~ell~~~~id~v~I~tp~~~   79 (181)
T d1zh8a1           5 RLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDS----YEELLESGLVDAVDLTLPVEL   79 (181)
T ss_dssp             EEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESC----HHHHHHSSCCSEEEECCCGGG
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeee----eeccccccccceeeccccccc
Confidence            688999 8999964 4565655433 356644 6777776654 57887666532    2222  246888888877554


Q ss_pred             ceeeeeeccccCCceEEEE
Q 025278          227 ISIVYQKCDKFQEKSLINF  245 (255)
Q Consensus       227 ~~~~~~~~~~~~~G~~v~~  245 (255)
                      -...+..+++  .|.=+++
T Consensus        80 h~~~~~~al~--~gk~V~~   96 (181)
T d1zh8a1          80 NLPFIEKALR--KGVHVIC   96 (181)
T ss_dssp             HHHHHHHHHH--TTCEEEE
T ss_pred             cccccccccc--cchhhhc
Confidence            4444444443  3444443

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.67  E-value=1.6  Score=32.65  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=28.1

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHH-HHhcCCcEEEEe
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLA-KHVFGASKVAAT  183 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a-~~~~g~~vi~~~  183 (255)
                      -.|.+|+|.| .|.+|..+++.+ +.. |++++.++
T Consensus        29 l~g~~vaIqG-~GnVG~~~a~~L~~e~-Ga~vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQG-FGNVGQFAALLISQEL-GSKVVAVS   62 (234)
T ss_dssp             TTTCEEEEEC-CSHHHHHHHHHHHHHH-CCEEEEEE
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHhc-CCceEEee
Confidence            4689999999 999999999887 564 99999776

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=84.42  E-value=1.8  Score=29.63  Aligned_cols=62  Identities=19%  Similarity=0.295  Sum_probs=48.2

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      .++++++..-+.+++.-..-..-.+++..++.++ ..++++...+++..+.++++|++.++++
T Consensus        63 ~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p  125 (153)
T d1id1a_          63 VLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSP  125 (153)
T ss_dssp             HHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECH
T ss_pred             HHHHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHCCCCEEECH
Confidence            3467777777777776545566677888888863 4578888889999999999999999875

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.35  E-value=0.85  Score=33.05  Aligned_cols=96  Identities=14%  Similarity=0.127  Sum_probs=53.5

Q ss_pred             EEEEEcCCchHHHHHHHHHHHh--c--CCcEEEE-ec--ChhhHHHHHHcC-------CCE---------------EEcC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHV--F--GASKVAA-TS--STAKLDLLRSLG-------ADL---------------AIDY  203 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~--~--g~~vi~~-~~--~~~~~~~~~~~g-------~~~---------------v~~~  203 (255)
                      +|.|.| -|-+|.++.+.+...  .  ..+++++ +.  +.+.+.++-++.       .+.               +++.
T Consensus         4 kigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~~g   82 (190)
T d1k3ta1           4 KVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNG   82 (190)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEETT
T ss_pred             EEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEEcC
Confidence            688999 999999988766431  1  2345544 33  456666664432       111               1111


Q ss_pred             C-------Ccccccc---CCCccEEEECCCCccceeeeeeccccCCceEEEEeeccC
Q 025278          204 T-------KENIEDL---PEKFDVVFDAVGKMCISIVYQKCDKFQEKSLINFGLFRQ  250 (255)
Q Consensus       204 ~-------~~~~~~~---~~~~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~G~~~~  250 (255)
                      .       ..+..+.   ..++|+||||+|.......+..-+. .+-+-|++..+.+
T Consensus        83 ~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~-~GakkViiSAP~~  138 (190)
T d1k3ta1          83 HRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLR-GGARKVVISAPAS  138 (190)
T ss_dssp             EEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHH-TTCSEEEESSCCB
T ss_pred             ceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcc-cCcceeeeccCCc
Confidence            0       0011111   1289999999997766666655554 3455566666543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.33  E-value=0.53  Score=34.78  Aligned_cols=30  Identities=13%  Similarity=0.267  Sum_probs=26.5

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEec
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATS  184 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~  184 (255)
                      -|+|+| +|+.|+.++..|.++ |.+|.+++.
T Consensus         5 DviVIG-~GpaGl~aA~~aa~~-G~kV~viE~   34 (235)
T d1h6va1           5 DLIIIG-GGSGGLAAAKEAAKF-DKKVMVLDF   34 (235)
T ss_dssp             EEEEEC-CSHHHHHHHHHHGGG-CCCEEEECC
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCeEEEEec
Confidence            478999 899999999999885 999999984

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=83.80  E-value=0.57  Score=35.39  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=26.7

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .|+|+| +|.+|+.++..+.. .|.+|+++++.+
T Consensus         6 DvvIIG-aGi~Gls~A~~La~-~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIG-GGIIGSAIAYYLAK-ENKNTALFESGT   37 (276)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            489999 89999998777777 489999998753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.66  E-value=0.61  Score=34.35  Aligned_cols=33  Identities=21%  Similarity=0.102  Sum_probs=26.3

Q ss_pred             EEEEEcCCchHHHHHHHHHHHh-cCCcEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHV-FGASKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~-~g~~vi~~~~~~  186 (255)
                      +|+|+| +|+.|+.++..++.. .+.+|++++..+
T Consensus         3 kv~iIG-aGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVG-SGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            799999 899999998866543 367898888765

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.66  E-value=0.65  Score=33.86  Aligned_cols=30  Identities=30%  Similarity=0.415  Sum_probs=26.2

Q ss_pred             EEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          154 ILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       154 VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      |+|+| +|+.|+.++..|.++ |.+|.+++..
T Consensus         6 viIIG-~GpaG~~aA~~aar~-G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIG-GGSGGLASARRAAEL-GARAAVVESH   35 (221)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             EEEEC-CCHHHHHHHHHHHHC-CCEEEEEecc
Confidence            78889 899999999999885 9999999754

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.59  E-value=1.1  Score=35.21  Aligned_cols=39  Identities=8%  Similarity=-0.050  Sum_probs=30.3

Q ss_pred             CCEEEEEcC--CchHHHHHHHHHHHhcCCcEEEEecChhhHH
Q 025278          151 GKSILVLGG--AGGVGTMVIQLAKHVFGASKVAATSSTAKLD  190 (255)
Q Consensus       151 g~~VlI~ga--~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~  190 (255)
                      ++..||+|+  +.++|.+.++.+.. .|++|++..++++...
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~-~GA~V~i~~~~~~~~~   42 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSK-RNVKIIFGIWPPVYNI   42 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHH-TTCEEEEEECGGGHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHH-cCCEEEEEeCchhhhh
Confidence            577899994  45999998877777 4999999887765444

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.47  E-value=0.6  Score=36.23  Aligned_cols=32  Identities=13%  Similarity=0.289  Sum_probs=28.0

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .|+|+| +|..|+.++..+... |.+|.+++.++
T Consensus         3 dv~IIG-aG~sGl~~A~~L~~~-g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVG-SGLFGAVCANELKKL-NKKVLVIEKRN   34 (298)
T ss_dssp             EEEEEC-CSHHHHHHHHHHGGG-TCCEEEECSSS
T ss_pred             cEEEEC-CcHHHHHHHHHHHhC-CCcEEEEECCC
Confidence            489999 899999999999874 89999998765

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.45  E-value=0.59  Score=36.13  Aligned_cols=31  Identities=26%  Similarity=0.437  Sum_probs=26.4

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      -|+|+| +|..|+.++.-|... |.+|++++..
T Consensus        18 DVlVIG-~G~aGl~aA~~la~~-G~~V~lvEK~   48 (308)
T d1y0pa2          18 DVVVVG-SGGAGFSAAISATDS-GAKVILIEKE   48 (308)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHC-CCcEEEEecC
Confidence            489999 899999988888874 9999999853

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.40  E-value=0.094  Score=36.59  Aligned_cols=81  Identities=12%  Similarity=0.053  Sum_probs=43.1

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHh--cCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCcccee
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHV--FGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKMCISI  229 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~--~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~~  229 (255)
                      -+|.|.||+|-+|+-.++++...  ...++..+..+...-+.....+.+..+..  .+ .....+.|++|-|.++..+..
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~--~~-~~~~~~~d~vf~a~p~~~s~~   79 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGD--VD-SFDFSSVGLAFFAAAAEVSRA   79 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEE--GG-GCCGGGCSEEEECSCHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhcc--ch-hhhhccceEEEecCCcchhhh
Confidence            46999999999999999988642  24566655443321111111111111100  00 011236788888887665544


Q ss_pred             eeeecc
Q 025278          230 VYQKCD  235 (255)
Q Consensus       230 ~~~~~~  235 (255)
                      ......
T Consensus        80 ~~~~~~   85 (144)
T d2hjsa1          80 HAERAR   85 (144)
T ss_dssp             HHHHHH
T ss_pred             hccccc
Confidence            444433

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.29  E-value=0.59  Score=33.59  Aligned_cols=30  Identities=10%  Similarity=0.161  Sum_probs=25.8

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFGASKVAAT  183 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~  183 (255)
                      ..|+|+| +|+.|+.++..|.+. |.++++++
T Consensus         6 ~~VvIIG-gGpaGl~aA~~~ar~-g~~v~vie   35 (192)
T d1vdca1           6 TRLCIVG-SGPAAHTAAIYAARA-ELKPLLFE   35 (192)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHT-TCCCEEEC
T ss_pred             ceEEEEC-CCHHHHHHHHHHHHc-CCcEEEEE
Confidence            5799999 899999988877774 89999886

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.29  E-value=0.73  Score=36.00  Aligned_cols=63  Identities=16%  Similarity=0.160  Sum_probs=43.2

Q ss_pred             HHHHHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe---cChhhHHHHHHcCCCEEEc
Q 025278          139 AYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT---SSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       139 a~~~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~---~~~~~~~~~~~~g~~~v~~  202 (255)
                      |++.+....-......++.+.+|..|.+++..|+.+ |.+.+++.   .++++.+.++.+|++.+.-
T Consensus        56 a~~~~~~~~~~~~~~~vv~~ssGN~g~a~A~~a~~~-g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~  121 (318)
T d1v71a1          56 ALNALSQLNEAQRKAGVLTFSSGNHAQAIALSAKIL-GIPAKIIMPLDAPEAKVAATKGYGGQVIMY  121 (318)
T ss_dssp             HHHHHTTCCHHHHHHCEEECCSSHHHHHHHHHHHHT-TCCEEEEEETTCCHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHhhhccccceeeeeccchhhHHHHHhhccc-ccceeecccccccHHHHHHHHHcCCcEEec
Confidence            445554332212223356666999999999999985 88777664   4667888889999986653

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.21  E-value=0.75  Score=33.17  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      .+++|.|+| .|.+|...++.++.. +.+|+..++..
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~f-g~~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIG-YGHIGTQLGILAESL-GMYVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             cceEEEEee-cccchhhhhhhcccc-cceEeeccccc
Confidence            578999999 999999999999985 99999998653

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.14  E-value=0.53  Score=35.03  Aligned_cols=95  Identities=16%  Similarity=0.121  Sum_probs=59.2

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCC----E-EEcCCCcccc-cc-CCCccEEE-
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGAD----L-AIDYTKENIE-DL-PEKFDVVF-  219 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~----~-v~~~~~~~~~-~~-~~~~d~vi-  219 (255)
                      ..+|++||=+| + +.|..+..+++. .+.++++++.+++-++.+++....    . .+..+..... .. .+.+|.++ 
T Consensus        51 ~~~g~~VLdIG-c-G~G~~a~~~a~~-~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1          51 SSKGGRVLEVG-F-GMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  127 (229)
T ss_dssp             TTTCEEEEEEC-C-TTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             ccCCCeEEEee-c-cchHHHHHHHHc-CCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceee
Confidence            46788999998 4 458888888886 467899999999988888654321    1 1111111111 11 24688874 


Q ss_pred             ECCCCcc----------ceeeeeeccccCCceEEEEe
Q 025278          220 DAVGKMC----------ISIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       220 d~~G~~~----------~~~~~~~~~~~~~G~~v~~G  246 (255)
                      |..-...          ....+.+.++ ++|+++++.
T Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~r~Lk-pGG~~~~~~  163 (229)
T d1zx0a1         128 DTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYCN  163 (229)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEECC
T ss_pred             cccccccccccccCHHHHHHHHHHHcC-CCcEEEEEe
Confidence            6654322          2233456677 899988653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=83.04  E-value=2.8  Score=28.35  Aligned_cols=69  Identities=17%  Similarity=0.032  Sum_probs=42.6

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHH-HH-------cCCC-EEEcCCCccccccCCCccEEEECC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLL-RS-------LGAD-LAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~-~~-------~g~~-~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      +|.|+| +|.+|...+..+...+ ..+++.+|.++++.+.. ..       +..+ .+...  .+. +...+.|+|+-+.
T Consensus         2 KI~IIG-aG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~-~~~~dadvvvita   77 (142)
T d1guza1           2 KITVIG-AGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY-ADTANSDIVIITA   77 (142)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG-GGGTTCSEEEECC
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCH-HHhcCCeEEEEEE
Confidence            588999 6999998777776632 24778888888765432 11       1111 22211  122 2246899999999


Q ss_pred             CCc
Q 025278          223 GKM  225 (255)
Q Consensus       223 G~~  225 (255)
                      |.+
T Consensus        78 g~~   80 (142)
T d1guza1          78 GLP   80 (142)
T ss_dssp             SCC
T ss_pred             ecC
Confidence            843

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.85  E-value=0.77  Score=35.40  Aligned_cols=46  Identities=20%  Similarity=0.182  Sum_probs=36.0

Q ss_pred             hcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHH
Q 025278          145 RSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRS  194 (255)
Q Consensus       145 ~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~  194 (255)
                      ..+.+++++||=+| + +.|..+..+++.  |.+|+++|.+++-++.+++
T Consensus        51 ~l~~~~~~~vLD~G-c-G~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~   96 (292)
T d1xvaa_          51 LLRQHGCHRVLDVA-C-GTGVDSIMLVEE--GFSVTSVDASDKMLKYALK   96 (292)
T ss_dssp             HHHHTTCCEEEESS-C-TTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             HhhhcCCCEEEEec-C-CCcHHHHHHHHc--CCeeeeccCchHHHHHHHH
Confidence            34446778999888 4 448888889875  7899999999988777753

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=82.83  E-value=2.2  Score=32.07  Aligned_cols=101  Identities=13%  Similarity=0.047  Sum_probs=62.7

Q ss_pred             HHhcccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHc-C-CCE--EEcCCCccccccCCCccEE
Q 025278          143 LERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSL-G-ADL--AIDYTKENIEDLPEKFDVV  218 (255)
Q Consensus       143 l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~-g-~~~--v~~~~~~~~~~~~~~~d~v  218 (255)
                      ++.....++.+||=.| + +.|..+..++... ..+|.+++.+++-++.+++. . ...  .+..+-.++....+.+|+|
T Consensus        86 l~~l~~~~~~~vLD~G-c-G~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I  162 (254)
T d1xtpa_          86 IASLPGHGTSRALDCG-A-GIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLI  162 (254)
T ss_dssp             HHTSTTCCCSEEEEET-C-TTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEE
T ss_pred             HhhCCCCCCCeEEEec-c-cCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceE
Confidence            3455566778899888 4 5588888888773 77899999999988888753 2 221  2222222222223579999


Q ss_pred             EECCCCc--------cceeeeeeccccCCceEEEEee
Q 025278          219 FDAVGKM--------CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       219 id~~G~~--------~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                      +-.---.        .....+.+.++ ++|.+++.-.
T Consensus       163 ~~~~vl~hl~d~d~~~~l~~~~~~Lk-pgG~iii~e~  198 (254)
T d1xtpa_         163 VIQWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKEN  198 (254)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             EeeccccccchhhhHHHHHHHHHhcC-CCcEEEEEec
Confidence            8653311        11233455566 7888887543

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=82.82  E-value=0.86  Score=36.42  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=26.0

Q ss_pred             CCEEEEEcCCchHHHHHHHHH-HHhcCCcEEEEe
Q 025278          151 GKSILVLGGAGGVGTMVIQLA-KHVFGASKVAAT  183 (255)
Q Consensus       151 g~~VlI~ga~g~~G~~a~~~a-~~~~g~~vi~~~  183 (255)
                      +.+|||+||+|-+|...+..+ +. .+.+|+++|
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~-~~~~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRD-TNHSVVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-CCCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHh-CCCEEEEEe
Confidence            578999999999998766644 44 588999886

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.78  E-value=1.3  Score=30.37  Aligned_cols=45  Identities=9%  Similarity=0.087  Sum_probs=35.1

Q ss_pred             HHHHHHhcccCCCCEEEEE--cCCchHHHHHHHHHHHhcCCcEEEEecCh
Q 025278          139 AYEGLERSAFSAGKSILVL--GGAGGVGTMVIQLAKHVFGASKVAATSST  186 (255)
Q Consensus       139 a~~~l~~~~~~~g~~VlI~--ga~g~~G~~a~~~a~~~~g~~vi~~~~~~  186 (255)
                      ....+ ..+..+++.|+|+  | .|-+|+-+++.++.+ |++|.++.+.+
T Consensus        28 ~~d~l-~~~~~~~~~vvi~d~g-gg~ig~e~A~~la~~-G~~Vtlv~~~~   74 (156)
T d1djqa2          28 PEQVM-DGKKKIGKRVVILNAD-TYFMAPSLAEKLATA-GHEVTIVSGVH   74 (156)
T ss_dssp             HHHHH-HTCSCCCSEEEEEECC-CSSHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             HHHHh-cCccccCCceEEEecC-CChHHHHHHHHHHHc-CCeEEEEecCC
Confidence            44444 3556788888887  5 799999999999985 99999998765

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=82.75  E-value=0.54  Score=36.80  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=26.0

Q ss_pred             EEEEEcCCchHHHHHHHHHHH----hcCCcEEEEecCh
Q 025278          153 SILVLGGAGGVGTMVIQLAKH----VFGASKVAATSST  186 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~----~~g~~vi~~~~~~  186 (255)
                      -|+|.| +|..|++++.++.+    ..|.+|+++++.+
T Consensus         9 DV~IvG-aG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVG-AGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            489999 89999998877742    2489999998754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.42  E-value=0.68  Score=36.36  Aligned_cols=34  Identities=15%  Similarity=0.095  Sum_probs=25.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecCh
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSST  186 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~  186 (255)
                      ++|+|+| +|..|++++..+++.+ +.+|++.++++
T Consensus         5 KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            5899999 8999998876554422 35888888875

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=82.38  E-value=1.5  Score=29.90  Aligned_cols=71  Identities=15%  Similarity=0.080  Sum_probs=39.2

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhH-HHHHHcC--C---CEEEcCCCccccccCCCccEEEECCCCc
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKL-DLLRSLG--A---DLAIDYTKENIEDLPEKFDVVFDAVGKM  225 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~-~~~~~~g--~---~~v~~~~~~~~~~~~~~~d~vid~~G~~  225 (255)
                      .|.|+| +|.+|...+..+...+ ..+++.+|.++++. ..+.++.  .   ..+... ..+.. ..++.|+|+-+.|.+
T Consensus         3 KI~IIG-aG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~-~~~~~-~~~~adivvitag~~   79 (142)
T d1y6ja1           3 KVAIIG-AGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-AGDYS-DVKDCDVIVVTAGAN   79 (142)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC---CGG-GGTTCSEEEECCCC-
T ss_pred             eEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe-eCcHH-HhCCCceEEEecccc
Confidence            578889 6999999887776632 23688888877653 2232322  1   111111 12222 246899999998854


Q ss_pred             c
Q 025278          226 C  226 (255)
Q Consensus       226 ~  226 (255)
                      .
T Consensus        80 ~   80 (142)
T d1y6ja1          80 R   80 (142)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=82.28  E-value=2.7  Score=30.70  Aligned_cols=93  Identities=17%  Similarity=0.169  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCC--EEEcCCCccccccCCCccEEEE-CC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGAD--LAIDYTKENIEDLPEKFDVVFD-AV  222 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~--~v~~~~~~~~~~~~~~~d~vid-~~  222 (255)
                      ++++++=.| +|+ |.=.+-+|-.....+++.++++..|..+++    ++|.+  .+++.+.++... ...+|+|.- +.
T Consensus        65 ~~~~ilDiG-sGa-G~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~V~sRA~  141 (207)
T d1jsxa_          65 QGERFIDVG-TGP-GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-EPPFDGVISRAF  141 (207)
T ss_dssp             CSSEEEEET-CTT-TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-CSCEEEEECSCS
T ss_pred             cCCceeeee-ccC-CceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc-ccccceehhhhh
Confidence            456888777 333 544444554445789999999999998874    47754  556666555432 236888772 34


Q ss_pred             CCccc-eeeeeeccccCCceEEEEe
Q 025278          223 GKMCI-SIVYQKCDKFQEKSLINFG  246 (255)
Q Consensus       223 G~~~~-~~~~~~~~~~~~G~~v~~G  246 (255)
                      +.... ...+...++ ++|+++.+=
T Consensus       142 ~~~~~ll~~~~~~l~-~~g~~~~~K  165 (207)
T d1jsxa_         142 ASLNDMVSWCHHLPG-EQGRFYALK  165 (207)
T ss_dssp             SSHHHHHHHHTTSEE-EEEEEEEEE
T ss_pred             cCHHHHHHHHHHhcC-CCcEEEEEC
Confidence            33222 222244444 678887764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.84  E-value=0.74  Score=35.89  Aligned_cols=31  Identities=32%  Similarity=0.474  Sum_probs=26.5

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      .|+|+| +|..|+.++.-|... |.+|++++..
T Consensus        21 DVvVIG-aG~aGl~AA~~aa~~-G~~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVG-AGSAGFNASLAAKKA-GANVILVDKA   51 (317)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHH-TCCEEEECSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence            589999 899999988888874 9999999753

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=81.79  E-value=2.2  Score=28.26  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=47.4

Q ss_pred             HHHhcccCCCCEEEEEcCCchHHHHHHHHHHHhc-CCcEEEEecChhhHHHHHHcCCCEEEcC
Q 025278          142 GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVF-GASKVAATSSTAKLDLLRSLGADLAIDY  203 (255)
Q Consensus       142 ~l~~~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~-g~~vi~~~~~~~~~~~~~~~g~~~v~~~  203 (255)
                      .++.+++..-+.+++.-..-..-+.++..+|.+. ..++++...+++..+.+++.|++.++++
T Consensus        54 ~L~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p  116 (129)
T d2fy8a1          54 DLEKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISP  116 (129)
T ss_dssp             HHHHTTCTTCSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHHHHHHCSEEECH
T ss_pred             HHHHhhhhcCcEEEEeccchhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHHHHCCCCEEECh
Confidence            3467777777777776545566677788888764 3578888889999999999999999864

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.54  E-value=6.2  Score=27.26  Aligned_cols=70  Identities=17%  Similarity=0.057  Sum_probs=43.9

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEecChhhHH-HHHHc-------CCCEEEcCCCccccccCCCccEEEECC
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFG-ASKVAATSSTAKLD-LLRSL-------GADLAIDYTKENIEDLPEKFDVVFDAV  222 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g-~~vi~~~~~~~~~~-~~~~~-------g~~~v~~~~~~~~~~~~~~~d~vid~~  222 (255)
                      ..|.|+| +|.+|..++..+...+- .+++.+|.++++.+ .+.++       +...++..  .++.+ .++.|+|+-+.
T Consensus        20 ~KI~IIG-aG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~--~d~~~-~~~adivvita   95 (159)
T d2ldxa1          20 CKITVVG-VGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFG--KDYNV-SANSKLVIITA   95 (159)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEE--SSGGG-GTTEEEEEECC
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEec--cchhh-hccccEEEEec
Confidence            4799999 79999998887776422 36778888876643 22222       22222211  22222 36899999999


Q ss_pred             CCc
Q 025278          223 GKM  225 (255)
Q Consensus       223 G~~  225 (255)
                      |.+
T Consensus        96 g~~   98 (159)
T d2ldxa1          96 GAR   98 (159)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            854

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=81.53  E-value=2.5  Score=32.36  Aligned_cols=68  Identities=19%  Similarity=0.295  Sum_probs=43.1

Q ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCCCE--EEcCCCccccccC-CCccEEEEC
Q 025278          150 AGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGADL--AIDYTKENIEDLP-EKFDVVFDA  221 (255)
Q Consensus       150 ~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~~~--v~~~~~~~~~~~~-~~~d~vid~  221 (255)
                      .+.+|+=.|  .|.|..++.+++.....+++++|.+++.++.++    .++.+.  ++..  +.+.... ..+|+|+-+
T Consensus       108 ~~~~vlDlG--tGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~--d~~~~~~~~~fDlIvsN  182 (274)
T d2b3ta1         108 QPCRILDLG--TGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS--DWFSALAGQQFAMIVSN  182 (274)
T ss_dssp             SCCEEEEET--CTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC--STTGGGTTCCEEEEEEC
T ss_pred             cccceeeee--hhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeec--ccccccCCCceeEEEec
Confidence            345566555  334666666777766789999999999888774    356532  2222  1222332 479999976

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=81.34  E-value=3.9  Score=31.25  Aligned_cols=47  Identities=21%  Similarity=0.397  Sum_probs=36.6

Q ss_pred             EEEcCCchHHHHHHHHHHHhcCCcEEEEe---cChhhHHHHHHcCCCEEEc
Q 025278          155 LVLGGAGGVGTMVIQLAKHVFGASKVAAT---SSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       155 lI~ga~g~~G~~a~~~a~~~~g~~vi~~~---~~~~~~~~~~~~g~~~v~~  202 (255)
                      ++...+|..|++++..++.+ |.+.+++.   .++.|.+..+.+|++.+..
T Consensus        58 vv~~SsGN~g~a~A~~a~~~-g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~  107 (293)
T d1o58a_          58 IVEPTSGNMGIAIAMIGAKR-GHRVILTMPETMSVERRKVLKMLGAELVLT  107 (293)
T ss_dssp             EEEECSSHHHHHHHHHHHHH-TCCEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             eEEecCcchhhHHHHhhhhc-cceeEeeccccccHHHeeccccCCcEEEEe
Confidence            55556999999999999986 87766654   3667888889999976543

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=81.22  E-value=1.3  Score=34.76  Aligned_cols=62  Identities=16%  Similarity=0.292  Sum_probs=44.0

Q ss_pred             HHHHHHhc-ccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEe---cChhhHHHHHHcCCCEEEc
Q 025278          139 AYEGLERS-AFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAAT---SSTAKLDLLRSLGADLAID  202 (255)
Q Consensus       139 a~~~l~~~-~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~---~~~~~~~~~~~~g~~~v~~  202 (255)
                      |++.+... .-.+..+|+... +|..|.+++..++.. |.+++++.   .+++|.+.++.+|++.++.
T Consensus        62 a~~~i~~~~~~~~~~~vv~as-sGN~g~a~A~~a~~~-g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~  127 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITAS-AGNHAQGVAFSSARL-GVKALIVMPTATADIKVDAVRGFGGEVLLH  127 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEE-CSSSHHHHHHHHHHT-TCCEEEECCSSCCHHHHHHHHHHSCEEECC
T ss_pred             HHHHHHHHHHhCCCCeeeecc-cchhHHHHHHhhccc-cccceeeccccchhHHHHHHHhcCCEEEEc
Confidence            44555432 233455565555 899999999999985 88888774   4667888889999986643

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.09  E-value=0.61  Score=34.33  Aligned_cols=33  Identities=9%  Similarity=0.009  Sum_probs=26.3

Q ss_pred             CEEEEEcCCchHHHHHHHHHHHhcC-------CcEEEEecCh
Q 025278          152 KSILVLGGAGGVGTMVIQLAKHVFG-------ASKVAATSST  186 (255)
Q Consensus       152 ~~VlI~ga~g~~G~~a~~~a~~~~g-------~~vi~~~~~~  186 (255)
                      .+|+|+| +|+.|+.++..+... |       .+|.+.+..+
T Consensus         3 ~~VaVIG-aGpaGL~aA~~L~~~-G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVG-SGPSAFFAAASLLKA-ADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHH-HHHSTTCCEEEEEEESSS
T ss_pred             cEEEEEC-cCHHHHHHHHHHHHc-CCccccCCCceEEEecCC
Confidence            4799999 999999998877764 4       4688887654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=80.95  E-value=2.1  Score=30.06  Aligned_cols=71  Identities=20%  Similarity=0.214  Sum_probs=42.6

Q ss_pred             cccCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHH----HcCC-CEEEcCCCcccc----ccCCCcc
Q 025278          146 SAFSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLR----SLGA-DLAIDYTKENIE----DLPEKFD  216 (255)
Q Consensus       146 ~~~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~----~~g~-~~v~~~~~~~~~----~~~~~~d  216 (255)
                      ..+..|.+||=.+  ++.|..++.++.  .|++++.++.+++..+.++    .+|. +.+...+...+.    ...+.+|
T Consensus        37 ~~~~~g~~vLDl~--~G~G~~~i~a~~--~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD  112 (171)
T d1ws6a1          37 LRYPRRGRFLDPF--AGSGAVGLEAAS--EGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFT  112 (171)
T ss_dssp             HHCTTCCEEEEET--CSSCHHHHHHHH--TTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEE
T ss_pred             ccccCCCeEEEec--cccchhhhhhhh--ccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccc
Confidence            3567788887665  233444455554  3789999999999887764    3553 344443332211    1235799


Q ss_pred             EEEE
Q 025278          217 VVFD  220 (255)
Q Consensus       217 ~vid  220 (255)
                      +||-
T Consensus       113 ~If~  116 (171)
T d1ws6a1         113 VAFM  116 (171)
T ss_dssp             EEEE
T ss_pred             eeEE
Confidence            9984

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.65  E-value=5.3  Score=25.74  Aligned_cols=55  Identities=11%  Similarity=0.132  Sum_probs=35.9

Q ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEecChh-------hH-----HHHHHcCCCEEEcCC
Q 025278          149 SAGKSILVLGGAGGVGTMVIQLAKHVF--GASKVAATSSTA-------KL-----DLLRSLGADLAIDYT  204 (255)
Q Consensus       149 ~~g~~VlI~ga~g~~G~~a~~~a~~~~--g~~vi~~~~~~~-------~~-----~~~~~~g~~~v~~~~  204 (255)
                      +.+++++|.| +|.+|.=++..++.++  +.+|.++.+.+.       ..     +.+++.|.+...+..
T Consensus        18 ~~p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~   86 (117)
T d1aoga2          18 EPPRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKEN   86 (117)
T ss_dssp             SCCSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCC
T ss_pred             hcCCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCE
Confidence            3457999999 8999998887777652  345888876442       11     223566776665543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=80.55  E-value=0.8  Score=35.67  Aligned_cols=31  Identities=23%  Similarity=0.501  Sum_probs=26.3

Q ss_pred             EEEEEcCCchHHHHHHHHHHHhcCCcEEEEecC
Q 025278          153 SILVLGGAGGVGTMVIQLAKHVFGASKVAATSS  185 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~  185 (255)
                      -|+|+| +|..|+.++..|... |.+|++++..
T Consensus        25 DVvVIG-~G~aGl~aA~~la~~-G~~V~llEk~   55 (322)
T d1d4ca2          25 DVVIIG-SGGAGLAAAVSARDA-GAKVILLEKE   55 (322)
T ss_dssp             SEEEEC-SSHHHHHHHHHHHTT-TCCEEEECSS
T ss_pred             eEEEEC-cCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence            389999 899999988888774 9999999864

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=80.32  E-value=0.7  Score=33.47  Aligned_cols=90  Identities=19%  Similarity=0.135  Sum_probs=54.8

Q ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEecChhhHHHHHHcCCCEEEcCCCccccccCCCccEEEECCCCc--
Q 025278          148 FSAGKSILVLGGAGGVGTMVIQLAKHVFGASKVAATSSTAKLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGKM--  225 (255)
Q Consensus       148 ~~~g~~VlI~ga~g~~G~~a~~~a~~~~g~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~d~vid~~G~~--  225 (255)
                      +.++.+||=+| +| .|..+..+      .+++.+|.+++-++.+++.+.. ++..+..+.....+.+|+|+..---.  
T Consensus        34 ~~~~~~vLDiG-cG-~G~~~~~~------~~~~giD~s~~~~~~a~~~~~~-~~~~d~~~l~~~~~~fD~I~~~~~l~h~  104 (208)
T d1vlma_          34 LLPEGRGVEIG-VG-TGRFAVPL------KIKIGVEPSERMAEIARKRGVF-VLKGTAENLPLKDESFDFALMVTTICFV  104 (208)
T ss_dssp             HCCSSCEEEET-CT-TSTTHHHH------TCCEEEESCHHHHHHHHHTTCE-EEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred             hCCCCeEEEEC-CC-Cccccccc------ceEEEEeCChhhcccccccccc-cccccccccccccccccccccccccccc
Confidence            45667899888 54 35544333      3468899999999999887654 33433333322235799999653311  


Q ss_pred             ----cceeeeeeccccCCceEEEEee
Q 025278          226 ----CISIVYQKCDKFQEKSLINFGL  247 (255)
Q Consensus       226 ----~~~~~~~~~~~~~~G~~v~~G~  247 (255)
                          .....+.+.++ ++|++++.-.
T Consensus       105 ~d~~~~l~~~~~~L~-pgG~l~i~~~  129 (208)
T d1vlma_         105 DDPERALKEAYRILK-KGGYLIVGIV  129 (208)
T ss_dssp             SCHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred             cccccchhhhhhcCC-CCceEEEEec
Confidence                11223355566 7888877654

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=80.02  E-value=0.24  Score=34.47  Aligned_cols=80  Identities=18%  Similarity=0.167  Sum_probs=40.8

Q ss_pred             EEEEEcCCchHHHHHHHH-HHHh--cCCcEEEEecChhhHHHHHHcC-CCEEEcCCCccccccCCCccEEEECCCCccce
Q 025278          153 SILVLGGAGGVGTMVIQL-AKHV--FGASKVAATSSTAKLDLLRSLG-ADLAIDYTKENIEDLPEKFDVVFDAVGKMCIS  228 (255)
Q Consensus       153 ~VlI~ga~g~~G~~a~~~-a~~~--~g~~vi~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~d~vid~~G~~~~~  228 (255)
                      +|.|.||+|-+|+-.+++ +.+.  .-.+++...++..........+ ...+.+..+  .. ...++|++|-|+++..+.
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~--~~-~~~~~DivF~a~~~~~s~   79 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFD--LE-ALKALDIIVTCQGGDYTN   79 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTC--HH-HHHTCSEEEECSCHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccc--hh-hhhcCcEEEEecCchHHH
Confidence            689999999999988874 4331  1344554544332211111111 111111111  00 124789999888876655


Q ss_pred             eeeeecc
Q 025278          229 IVYQKCD  235 (255)
Q Consensus       229 ~~~~~~~  235 (255)
                      ....+..
T Consensus        80 ~~~~~~~   86 (146)
T d1t4ba1          80 EIYPKLR   86 (146)
T ss_dssp             HHHHHHH
T ss_pred             HhhHHHH
Confidence            4444443