Citrus Sinensis ID: 025299

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
MDRAGGHTAGELCAAVWRSALGFYCESFRFEGGGRQYNRGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQERKRAVSSPSSSSSNYSSPSSTVTTVDSMPCPPPQGKASFYDTGGNDETRVAAALVEEYETSCYSMDDIWKDIELSEEKIMKQDGNGNVNFACPSPMAAPACWGYSSWDSIWKMDEADEESKMMINLPTDDQFISSWAATLTG
ccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHccccccHHHcccccccccccccccHHHHHHHHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHccc
ccHHcccccccccHHHHHHHHHHHHHcccccHcHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHccc
mdragghtaGELCAAVWRSALGFYcesfrfegggrqynrglnrtgkscrLRWVnylhpglkrgkmtpqEERLVLELHAKWGNRWSRIarklpgrtdneIKNYWRTHMRKKAQErkravsspsssssnysspsstvttvdsmpcpppqgkasfydtggnDETRVAAALVEEYETSCYSMDDIWKDIELSEEKIMkqdgngnvnfacpspmaapacwgysswdsiWKMDEADEESKMminlptddqFISSWAATLTG
mdragghtagELCAAVWRSALGFYCESFrfegggrqynrglnrtgkscrlrWVNYlhpglkrgkmtpqEERLVLELhakwgnrwsriarklpgrtdneiknyWRTHMRKKAqerkravsspsssssnysspsSTVTTVDSMPCPPPQGKASFYDTGGNDETRVAAALVEEYETSCYSMDDIWKDIELSEEKIMKQDGNGNVNFACPSPMAAPACWGYSSWDSIWKMDEADEESKMMInlptddqfISSWAATLTG
MDRAGGHTAGELCAAVWRSALGFYCESFRFEGGGRQYNRGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQERKRAvsspsssssnysspsstvttvdsmpCPPPQGKASFYDTGGNDETRVAAALVEEYETSCYSMDDIWKDIELSEEKIMKQDGNGNVNFACPSPMAAPACWGYSSWDSIWKMDEADEESKMMINLPTDDQFISSWAATLTG
********AGELCAAVWRSALGFYCESFRFEGGGRQYNRGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWR********************************************************TRVAAALVEEYETSCYSMDDIWKDIELSEEKIMKQDGNGNVNFACPSPMAAPACWGYSSWDSIWKMD*****************FI*********
*****GHTAGELCAAVWRSALGFYCESFRFEGGGRQYNRGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHM*************************************************************************IWKDIELSEEK***********************WGYSSWDSIWKMDEADEESKMMINLPTDDQFISSWAATLTG
*********GELCAAVWRSALGFYCESFRFEGGGRQYNRGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHM**********************************PCPPPQGKASFYDTGGNDETRVAAALVEEYETSCYSMDDIWKDIELSEEKIMKQDGNGNVNFACPSPMAAPACWGYSSWDSIWKMDEADEESKMMINLPTDDQFISSWAATLTG
********AGELCAAVWRSALGFYCESFRFEGGGRQYNRGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQERK******************************************************************WKDIELSEEKIMKQDGNGNVNFACPSPMAAPACWGYSSW*********************DDQFISS*****T*
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MDRAGGHTAGELCAAVWRSALGFYCESFRFEGGGRQYNRGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQERKRAVSSPSSSSSNYSSPSSTVTTVDSMPCPPPQGKASFYDTGGNDETRVAAALVEEYETSCYSMDDIWKDIELSEEKIMKQDGNGNVNFACPSPMAAPACWGYSSWDSIWKMDEADEESKMMINLPTDDQFISSWAATLTG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query255 2.2.26 [Sep-21-2011]
Q9LX82256 Transcription factor MYB4 no no 0.717 0.714 0.611 5e-50
Q4JL84235 Transcription factor MYB5 no no 0.662 0.719 0.591 4e-46
Q53NK6237 Myb-related protein MYBAS yes no 0.717 0.772 0.497 2e-40
Q4JL76242 Myb-related protein MYBAS no no 0.298 0.314 0.921 2e-37
P81391205 Myb-related protein 305 O N/A no 0.533 0.663 0.440 4e-30
Q9LK95226 Transcription factor MYB2 no no 0.572 0.646 0.401 3e-28
P81396198 Myb-related protein 340 O N/A no 0.556 0.717 0.434 5e-27
O22264 371 Transcription factor MYB1 no no 0.403 0.277 0.535 5e-26
Q50EX6294 Protein ODORANT1 OS=Petun N/A no 0.278 0.241 0.676 2e-24
Q9SPG2 366 Transcription factor MYB2 no no 0.380 0.265 0.544 2e-24
>sp|Q9LX82|MYB48_ARATH Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1 Back     alignment and function desciption
 Score =  197 bits (502), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 137/193 (70%), Gaps = 10/193 (5%)

Query: 40  GLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEI 99
           GLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWS+IARKLPGRTDNEI
Sbjct: 40  GLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEI 99

Query: 100 KNYWRTHMRKKAQERKRAVS-SPSSSSSNYSSPSSTVTTVDSMPCPPPQ--GKASFYDTG 156
           KNYWRTHMRKKAQE+KR VS + S S+ + SS ++T T      C   +  G+ SFYDTG
Sbjct: 100 KNYWRTHMRKKAQEKKRPVSPTSSFSNCSSSSVTTTTTNTQDTSCHSRKSSGEVSFYDTG 159

Query: 157 GNDETRVAAALVEEYETSCYSMDDIWKDIELSEEKIMK--QDGNGNVNFACPSPMAAPAC 214
           G+  TR    + +E E   YS+DDIW++I+ S   I+K  +D     +     P  A   
Sbjct: 160 GSRSTR---EMNQENE-DVYSLDDIWREIDHSAVNIIKPVKDIYSEQSHCLSYPNLASPS 215

Query: 215 WGYSSWDSIWKMD 227
           W  SS DSIW MD
Sbjct: 216 WE-SSLDSIWNMD 227
Transcription factor.
Arabidopsis thaliana (taxid: 3702)
>sp|Q4JL84|MYB59_ARATH Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2 Back     alignment and function description
>sp|Q53NK6|MYBA1_ORYSJ Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1 Back     alignment and function description
>sp|Q4JL76|MYBA2_ORYSJ Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1 Back     alignment and function description
>sp|P81391|MYB05_ANTMA Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1 Back     alignment and function description
>sp|Q9LK95|MYB21_ARATH Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1 Back     alignment and function description
>sp|P81396|MYB40_ANTMA Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1 Back     alignment and function description
>sp|O22264|MYB12_ARATH Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1 Back     alignment and function description
>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
225435070258 PREDICTED: transcription factor MYB59-li 0.815 0.806 0.619 8e-58
255580592244 r2r3-myb transcription factor, putative 0.788 0.823 0.619 5e-57
334185755236 transcription factor MYB48 [Arabidopsis 0.850 0.919 0.582 1e-55
297746133235 unnamed protein product [Vitis vinifera] 0.741 0.804 0.598 2e-53
224054846241 predicted protein [Populus trichocarpa] 0.760 0.804 0.616 3e-52
30697277214 transcription factor MYB59 [Arabidopsis 0.737 0.878 0.594 1e-51
388522617217 unknown [Medicago truncatula] 0.764 0.898 0.551 4e-51
224104487228 predicted protein [Populus trichocarpa] 0.737 0.824 0.631 6e-51
449460969267 PREDICTED: transcription factor MYB48-li 0.768 0.734 0.577 3e-50
357454091243 Myb-like transcription factor [Medicago 0.760 0.798 0.549 3e-50
>gi|225435070|ref|XP_002284400.1| PREDICTED: transcription factor MYB59-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 140/226 (61%), Positives = 159/226 (70%), Gaps = 18/226 (7%)

Query: 40  GLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEI 99
           GLNRTGKSCRLRWVNYLHPGLKRGKMTP EERLVLELH++WGNRWSRIARKLPGRTDNEI
Sbjct: 41  GLNRTGKSCRLRWVNYLHPGLKRGKMTPHEERLVLELHSQWGNRWSRIARKLPGRTDNEI 100

Query: 100 KNYWRTHMRKKAQERKRAVSSPSSSSSNYSSPSSTVTTVDSMPCPPPQGKASFYDTGGND 159
           KNYWRTHMRKKAQERKRA+S  S SS+  SS       VD +P    + + SF+DTGG  
Sbjct: 101 KNYWRTHMRKKAQERKRAISPSSPSSNCSSSAPHN-PKVDLLPFSETEER-SFHDTGGPK 158

Query: 160 ETRVAAALVEEYETS--CYSMDDIWKDIELSEEKIMKQDGNG----NVNFAC-PSPMAAP 212
                    EE + +   YSMDDIWKDI  SEE  +K   +G      +FAC P+PMA+P
Sbjct: 159 ALAPTGKKTEEEKEADKGYSMDDIWKDIAFSEENTIKPVYDGYKEEGCDFACPPNPMASP 218

Query: 213 ACWGYSSWDSIWKMDEADEESKMMINLPTDDQFISSW---AATLTG 255
             W Y   DS+W+MDE  EESKM   LP  DQFISS+    A+LTG
Sbjct: 219 V-WDYCP-DSLWRMDE--EESKMF--LPMSDQFISSYEHGMASLTG 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255580592|ref|XP_002531120.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223529316|gb|EEF31285.1| r2r3-myb transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|334185755|ref|NP_001190018.1| transcription factor MYB48 [Arabidopsis thaliana] gi|332644599|gb|AEE78120.1| transcription factor MYB48 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297746133|emb|CBI16189.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224054846|ref|XP_002298375.1| predicted protein [Populus trichocarpa] gi|222845633|gb|EEE83180.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30697277|ref|NP_851226.1| transcription factor MYB59 [Arabidopsis thaliana] gi|68480112|gb|AAY97895.1| MYB transcription factor MYB59-2 [Arabidopsis thaliana] gi|332009850|gb|AED97233.1| transcription factor MYB59 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388522617|gb|AFK49370.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224104487|ref|XP_002313452.1| predicted protein [Populus trichocarpa] gi|222849860|gb|EEE87407.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449460969|ref|XP_004148216.1| PREDICTED: transcription factor MYB48-like [Cucumis sativus] gi|449519206|ref|XP_004166626.1| PREDICTED: transcription factor MYB48-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357454091|ref|XP_003597326.1| Myb-like transcription factor [Medicago truncatula] gi|355486374|gb|AES67577.1| Myb-like transcription factor [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
TAIR|locus:2075236256 MYB48 "myb domain protein 48" 0.776 0.773 0.554 2.4e-51
TAIR|locus:2174324235 MYB59 "myb domain protein 59" 0.301 0.327 0.974 1.3e-49
TAIR|locus:2140847261 MYB79 "myb domain protein 79" 0.341 0.333 0.692 3.8e-33
TAIR|locus:2089812276 MYB121 "myb domain protein 121 0.301 0.278 0.727 4.9e-33
TAIR|locus:2087183269 MYB305 "myb domain protein 305 0.286 0.271 0.780 2.1e-32
TAIR|locus:2084269323 MYB108 "myb domain protein 108 0.333 0.263 0.620 1.3e-30
TAIR|locus:2032975283 MYB116 "myb domain protein 116 0.290 0.261 0.689 3.3e-30
TAIR|locus:2089159226 MYB21 "myb domain protein 21" 0.274 0.309 0.7 1.4e-29
TAIR|locus:2170573214 MYB24 "myb domain protein 24" 0.274 0.327 0.7 2.3e-29
TAIR|locus:2199357286 MYB62 "myb domain protein 62" 0.290 0.258 0.716 1.2e-28
TAIR|locus:2075236 MYB48 "myb domain protein 48" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 117/211 (55%), Positives = 134/211 (63%)

Query:    40 GLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEI 99
             GLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWS+IARKLPGRTDNEI
Sbjct:    40 GLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEI 99

Query:   100 KNYWRTHMRKKAQERKRAXXXXXXXXX-XXXXXXXXXXXXXXXXCPPPQ--GKASFYDTG 156
             KNYWRTHMRKKAQE+KR                           C   +  G+ SFYDTG
Sbjct:   100 KNYWRTHMRKKAQEKKRPVSPTSSFSNCSSSSVTTTTTNTQDTSCHSRKSSGEVSFYDTG 159

Query:   157 GNDETRVAAALVEEYETSCYSMDDIWKDIELSEEKIMK--QDGNGNVNFACPSPMAAPAC 214
             G+  TR    + +E E   YS+DDIW++I+ S   I+K  +D     +     P  A   
Sbjct:   160 GSRSTR---EMNQENE-DVYSLDDIWREIDHSAVNIIKPVKDIYSEQSHCLSYPNLASPS 215

Query:   215 WGYSSWDSIWKMDEADEESKMMINLPTDDQF 245
             W  SS DSIW MD AD+ SK+      +DQF
Sbjct:   216 WE-SSLDSIWNMD-ADK-SKISSYF-ANDQF 242
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;TAS
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
TAIR|locus:2174324 MYB59 "myb domain protein 59" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140847 MYB79 "myb domain protein 79" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089812 MYB121 "myb domain protein 121" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087183 MYB305 "myb domain protein 305" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084269 MYB108 "myb domain protein 108" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032975 MYB116 "myb domain protein 116" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089159 MYB21 "myb domain protein 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170573 MYB24 "myb domain protein 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199357 MYB62 "myb domain protein 62" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
MYB206
hypothetical protein (241 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
PLN03091 459 PLN03091, PLN03091, hypothetical protein; Provisio 3e-30
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 4e-28
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 4e-15
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 1e-12
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 1e-11
COG5147 512 COG5147, REB1, Myb superfamily proteins, including 1e-08
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 5e-05
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 0.004
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  117 bits (293), Expect = 3e-30
 Identities = 49/75 (65%), Positives = 60/75 (80%)

Query: 40  GLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEI 99
           GL R GKSCRLRW+NYL P LKRG  + QEE L++ELHA  GNRWS+IA +LPGRTDNEI
Sbjct: 45  GLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEI 104

Query: 100 KNYWRTHMRKKAQER 114
           KN W + ++KK ++R
Sbjct: 105 KNLWNSCLKKKLRQR 119

Length = 459
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 255
KOG0048238 consensus Transcription factor, Myb superfamily [T 100.0
PLN03212249 Transcription repressor MYB5; Provisional 99.97
PLN03091 459 hypothetical protein; Provisional 99.96
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.64
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.59
COG5147 512 REB1 Myb superfamily proteins, including transcrip 99.44
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.44
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 99.44
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.41
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.29
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.29
KOG0051607 consensus RNA polymerase I termination factor, Myb 99.2
PLN03212249 Transcription repressor MYB5; Provisional 99.18
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 99.17
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.01
PLN03091 459 hypothetical protein; Provisional 98.93
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 98.6
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.18
KOG0051607 consensus RNA polymerase I termination factor, Myb 98.03
COG5147512 REB1 Myb superfamily proteins, including transcrip 97.97
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 97.91
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.64
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.51
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 97.22
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 97.02
KOG1279506 consensus Chromatin remodeling factor subunit and 96.87
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 96.79
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 96.76
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 96.15
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 95.67
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 95.67
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 95.65
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 94.94
PRK13923170 putative spore coat protein regulator protein YlbO 94.87
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 94.55
KOG2656 445 consensus DNA methyltransferase 1-associated prote 94.37
PRK13923170 putative spore coat protein regulator protein YlbO 93.18
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 92.9
KOG4282345 consensus Transcription factor GT-2 and related pr 92.62
PF0828154 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013 90.6
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 90.36
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 90.03
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 88.67
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 86.97
PLN031421033 Probable chromatin-remodeling complex ATPase chain 83.63
KOG1194 534 consensus Predicted DNA-binding protein, contains 82.06
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-33  Score=248.72  Aligned_cols=108  Identities=49%  Similarity=0.860  Sum_probs=94.9

Q ss_pred             CCCCcccCCCcHHHHH-HHHHHHhhcC--Ceeec--ccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 025299            8 TAGELCAAVWRSALGF-YCESFRFEGG--GRQYN--RGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGN   82 (255)
Q Consensus         8 ~a~~l~kg~WT~eED~-llk~v~~~g~--w~~i~--~~l~Rt~~QCr~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~   82 (255)
                      ..+.+.||+||+|||. |+.+|..+|.  |..|+  ++++|+++|||+||.|||+|+|+|+.||+|||++||+||..+|+
T Consensus         3 kk~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GN   82 (238)
T KOG0048|consen    3 RNPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGN   82 (238)
T ss_pred             CCccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCc
Confidence            3445668999999995 6666777775  44443  45599999999999999999999999999999999999999999


Q ss_pred             ChhhhhhhCCCCCHHHHHHHHHHHhhHHHHhhh
Q 025299           83 RWSRIARKLPGRTDNEIKNYWRTHMRKKAQERK  115 (255)
Q Consensus        83 ~Ws~Ia~~lpgRT~nq~KnRw~~llrk~~~~~~  115 (255)
                      +|+.||++|||||||+|||+|+++++|+.....
T Consensus        83 rWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   83 RWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999877665

>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
1h88_C159 Crystal Structure Of Ternary Protein-Dna Complex1 L 2e-15
1gv2_A105 Crystal Structure Of C-Myb R2r3 Length = 105 2e-15
1h8a_C128 Crystal Structure Of Ternary Protein-Dna Complex3 L 2e-15
1mse_C105 Solution Structure Of A Specific Dna Complex Of The 2e-15
1a5j_A110 Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe 5e-15
3zqc_A131 Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin 4e-12
2k9n_A107 Solution Nmr Structure Of The R2r3 Dna Binding Doma 2e-09
3osf_A126 The Structure Of Protozoan Parasite Trichomonas Vag 2e-09
1mbj_A53 Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 2e-09
1idy_A54 Structure Of Myb Transforming Protein, Nmr, Minimiz 4e-09
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159 Back     alignment and structure 
Iteration: 1

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 50/69 (72%)
Query: 43  RTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNY 102
           R GK CR RW N+L+P +K+   T +E+R++ + H + GNRW+ IA+ LPGRTDN IKN+
Sbjct: 91  RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNH 150
Query: 103 WRTHMRKKA 111
           W + MR+K 
Sbjct: 151 WNSTMRRKV 159
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105 Back     alignment and structure
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128 Back     alignment and structure
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105 Back     alignment and structure
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110 Back     alignment and structure
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131 Back     alignment and structure
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107 Back     alignment and structure
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126 Back     alignment and structure
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 Back     alignment and structure
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 2e-42
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 6e-41
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 2e-40
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 4e-40
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 2e-39
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 3e-36
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 5e-17
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 5e-05
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 1e-07
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-05
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 4e-07
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 2e-05
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 8e-07
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 2e-06
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 2e-04
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 6e-06
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 7e-06
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 9e-06
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 2e-05
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-05
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 3e-05
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 4e-05
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 8e-05
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 8e-05
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 1e-04
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 2e-04
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 4e-04
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 4e-04
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 4e-04
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 8e-04
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
 Score =  140 bits (354), Expect = 2e-42
 Identities = 31/92 (33%), Positives = 47/92 (51%)

Query: 42  NRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 101
           NR+ K CR RW N+L P + +   TP+E+  +   + K G++WS IA+ +PGRTDN IKN
Sbjct: 34  NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKN 93

Query: 102 YWRTHMRKKAQERKRAVSSPSSSSSNYSSPSS 133
            W + + K+               S     + 
Sbjct: 94  RWNSSISKRISTNSNHKEILLPDRSKKRKAAD 125
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.97
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.97
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.97
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.97
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.97
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.96
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.94
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.85
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.81
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.75
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.74
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.73
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.69
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.68
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.67
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.66
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.64
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.64
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.62
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.62
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.61
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 99.4
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.57
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.55
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.49
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.49
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.47
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.44
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.42
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.42
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.41
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.38
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.38
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.38
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.36
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.36
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.35
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.33
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.33
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.32
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.3
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.27
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.25
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.25
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.24
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.24
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 99.23
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.19
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.1
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.08
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 99.06
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.05
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 98.98
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.96
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 98.94
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.93
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.79
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.71
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.16
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 98.6
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.6
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 98.51
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.45
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 97.79
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 98.25
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.21
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.18
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 98.03
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.7
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.69
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 97.64
2crg_A70 Metastasis associated protein MTA3; transcription 97.59
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 97.55
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 97.47
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 97.15
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 96.93
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 96.84
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 96.72
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 94.58
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 94.36
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 94.08
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 94.01
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 93.87
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 92.37
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 92.27
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 92.02
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 91.41
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 91.4
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 91.3
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 90.28
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 84.42
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 83.41
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 81.91
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
Probab=99.97  E-value=6.2e-32  Score=211.68  Aligned_cols=100  Identities=40%  Similarity=0.712  Sum_probs=90.2

Q ss_pred             CcccCCCcHHHHH-HHHHHHhhcC--CeeecccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhCCChhh
Q 025299           11 ELCAAVWRSALGF-YCESFRFEGG--GRQYNRGL-NRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSR   86 (255)
Q Consensus        11 ~l~kg~WT~eED~-llk~v~~~g~--w~~i~~~l-~Rt~~QCr~RW~n~L~P~l~~~~WT~eED~~Ll~lv~~~G~~Ws~   86 (255)
                      ++++|+||++||. |+++|..+|.  |..|+..+ +||++||++||.++|+|.+++++||+|||++|+++|.+||++|+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            4789999999996 5555666664  66787777 999999999999999999999999999999999999999999999


Q ss_pred             hhhhCCCCCHHHHHHHHHHHhhHH
Q 025299           87 IARKLPGRTDNEIKNYWRTHMRKK  110 (255)
Q Consensus        87 Ia~~lpgRT~nq~KnRw~~llrk~  110 (255)
                      ||++|||||+++|||||+.+++++
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999876
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 255
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 3e-14
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 3e-13
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 5e-12
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 1e-11
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 6e-07
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 7e-11
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 2e-05
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 8e-11
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 5e-05
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 2e-10
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-09
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 6e-05
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 2e-09
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 6e-08
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 0.002
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 2e-07
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 2e-07
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 5e-07
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 7e-04
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.9 bits (153), Expect = 3e-14
 Identities = 23/47 (48%), Positives = 34/47 (72%)

Query: 62  RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMR 108
           +   T +E+R++ + H + GNRW+ IA+ LPGRTDN IKN+W + MR
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.76
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.68
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.63
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.6
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.53
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.5
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.5
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.49
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.45
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.44
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.43
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.37
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 99.37
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.35
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.27
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.26
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.26
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.22
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.11
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.94
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 98.9
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 98.83
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.74
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.6
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.58
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.15
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.1
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.04
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 97.92
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 97.8
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 97.43
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 97.25
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 96.69
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 95.63
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 93.76
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 92.49
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 91.23
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 89.94
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=3.8e-19  Score=119.73  Aligned_cols=47  Identities=49%  Similarity=0.954  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChhhhhhhCCCCCHHHHHHHHHHHhh
Q 025299           62 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMR  108 (255)
Q Consensus        62 ~~~WT~eED~~Ll~lv~~~G~~Ws~Ia~~lpgRT~nq~KnRw~~llr  108 (255)
                      +++||+|||++|+++|++||++|+.||++|||||+++|||||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure