Citrus Sinensis ID: 025325

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MSTASINNWCLTSVSQAQSSLIKSSTLRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIHTCLNQNTVINK
ccccccccEEEEccccccccccccccccccHHHccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEcccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcc
cccccccccEEccccHccHccccccccccEEEEEcccccccccHcccccEEccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEEEEccHHHcHHHHcccccccEEEEEEHHHccccccccccHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHcc
mstasinnWCLTSVSQAQSSliksstlrpsivarlnspasppslirnepvfaapapiinpnwredmaNQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAqlqtpsdtkafdSVERIKEGFIHFkrekyeknpALYSELakgqspkymvfacsdsrvcpshvldfqpgeafvvrnvanivppydqtkyagVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSftfdgnnstyGLICKLIIHTClnqntvink
mstasinnwcLTSVSQAQSSLIKSSTLRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEqitaqlqtpsdtkafdsVERIKEGfihfkrekyekNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIHtclnqntvink
MSTASINNWCLTSVSQAQSSLIKSSTLRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYeeaiealkkllkekedlkPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKyagvgaaveyavLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIHTCLNQNTVINK
*******NWCLT*************************************VFAAPAPIINPNW***************************************************SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIHTCLNQNTV***
***************************************************AAPA*************************************************************RIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIHTCLNQ******
MSTASINNWCLTSV**********STLRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIHTCLNQNTVINK
***********************S*TLRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIHTCLNQNTVIN*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTASINNWCLTSVSQAQSSLIKSSTLRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWRxxxxxxxxxxxxxxxxxxxxxxxxxKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLIIHTCLNQNTVINK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query254 2.2.26 [Sep-21-2011]
P27140347 Carbonic anhydrase, chlor yes no 0.913 0.668 0.721 7e-91
P27141321 Carbonic anhydrase, chlor N/A no 0.901 0.713 0.711 1e-88
P16016319 Carbonic anhydrase, chlor N/A no 0.877 0.699 0.689 1e-84
P17067328 Carbonic anhydrase, chlor N/A no 0.909 0.704 0.676 3e-84
P46511330 Carbonic anhydrase OS=Fla N/A no 0.759 0.584 0.775 5e-84
P46512330 Carbonic anhydrase 1 OS=F N/A no 0.759 0.584 0.775 6e-84
P46281329 Carbonic anhydrase OS=Fla N/A no 0.759 0.586 0.770 2e-83
P46510330 Carbonic anhydrase OS=Fla N/A no 0.889 0.684 0.685 2e-83
P42737259 Carbonic anhydrase 2, chl no no 0.661 0.648 0.811 4e-78
P46513190 Carbonic anhydrase 2 (Fra N/A no 0.381 0.510 0.814 2e-43
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Back     alignment and function desciption
 Score =  333 bits (854), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 179/248 (72%), Positives = 198/248 (79%), Gaps = 16/248 (6%)

Query: 1   MSTASINNWCLTSVSQAQSSLIKSSTLRPSIVARLNSPASP-------------PSLIRN 47
           MSTA ++ + LTS+S +QSSL K S    S VA L  PAS              P+LIRN
Sbjct: 1   MSTAPLSGFFLTSLSPSQSSLQKLSLRTSSTVACL-PPASSSSSSSSSSSSRSVPTLIRN 59

Query: 48  EPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQT-- 105
           EPVFAAPAPII P W E+M  ++Y+EAIEALKKLL EKE+LK VAAAKVEQITA LQT  
Sbjct: 60  EPVFAAPAPIIAPYWSEEMGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGT 119

Query: 106 PSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLD 165
            SD KAFD VE IK+GFI FK+EKYE NPALY ELAKGQSPKYMVFACSDSRVCPSHVLD
Sbjct: 120 SSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLD 179

Query: 166 FQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225
           FQPG+AFVVRN+AN+VPP+D+ KY GVGAA+EYAVLHLKV NIVVIGHSACGGIKGLMSF
Sbjct: 180 FQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF 239

Query: 226 TFDGNNST 233
             DGNNST
Sbjct: 240 PLDGNNST 247
Reversible hydration of carbon dioxide.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Back     alignment and function description
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Back     alignment and function description
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Back     alignment and function description
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Back     alignment and function description
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Back     alignment and function description
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2, chloroplastic OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Back     alignment and function description
>sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria linearis PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
339958979321 chloroplast carbonic anhydrase [Dimocarp 0.913 0.722 0.858 1e-112
255567325326 carbonic anhydrase, putative [Ricinus co 0.913 0.711 0.777 1e-100
1354515320 carbonic anhydrase [Populus tremula x Po 0.968 0.768 0.732 3e-99
225452452335 PREDICTED: carbonic anhydrase, chloropla 0.913 0.692 0.745 3e-99
1354517320 carbonic anhydrase [Populus tremula x Po 0.968 0.768 0.732 5e-99
118489443321 unknown [Populus trichocarpa x Populus d 0.905 0.716 0.765 1e-98
224055529332 predicted protein [Populus trichocarpa] 0.905 0.692 0.765 2e-98
112292669324 chloroplast carbonic anhydrase [Pachysan 0.913 0.716 0.733 1e-93
20502881326 carbonic anhydrase [Gossypium hirsutum] 0.909 0.708 0.732 3e-92
297787439331 chloroplast beta-carbonic anhydrase [Bra 0.913 0.700 0.724 4e-91
>gi|339958979|gb|AEK25173.1| chloroplast carbonic anhydrase [Dimocarpus longan] Back     alignment and taxonomy information
 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/233 (85%), Positives = 214/233 (91%), Gaps = 1/233 (0%)

Query: 1   MSTASINNWCLTSVSQAQSSLIKSSTLRPSIVARLNSPASPPSLIRNEPVFAAPAPIINP 60
           MSTASIN+  LTS+  +QSSL K +TLRP+I ARLNS  SPPSLIRNEPVFAAPAPIINP
Sbjct: 1   MSTASINSCSLTSLFSSQSSL-KRATLRPTISARLNSSPSPPSLIRNEPVFAAPAPIINP 59

Query: 61  NWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKE 120
            WREDMAN+SYEEAIEALKKLL EK++LKPVAAAKVEQITAQLQT +D K FD+VER+K+
Sbjct: 60  TWREDMANKSYEEAIEALKKLLSEKDELKPVAAAKVEQITAQLQTTADGKPFDAVERMKD 119

Query: 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANI 180
           GFIHFKREKYEKNPALY ELAKGQSPK+MVFACSDSRVCPSHVLDFQPGEAFVVRNVANI
Sbjct: 120 GFIHFKREKYEKNPALYGELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANI 179

Query: 181 VPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNST 233
           VPPYDQ KYAGVGAAVEYAVLHLKV  IVVIGHSACGGIKGLMSFTF+G NST
Sbjct: 180 VPPYDQIKYAGVGAAVEYAVLHLKVQEIVVIGHSACGGIKGLMSFTFEGANST 232

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255567325|ref|XP_002524642.1| carbonic anhydrase, putative [Ricinus communis] gi|223536003|gb|EEF37661.1| carbonic anhydrase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|1354515|gb|AAC49785.1| carbonic anhydrase [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|225452452|ref|XP_002277957.1| PREDICTED: carbonic anhydrase, chloroplastic [Vitis vinifera] gi|296087661|emb|CBI34917.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|1354517|gb|AAB65822.1| carbonic anhydrase [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|118489443|gb|ABK96524.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|224055529|ref|XP_002298524.1| predicted protein [Populus trichocarpa] gi|222845782|gb|EEE83329.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|112292669|gb|ABI14813.1| chloroplast carbonic anhydrase [Pachysandra terminalis] Back     alignment and taxonomy information
>gi|20502881|gb|AAM22683.1|AF482951_1 carbonic anhydrase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|297787439|gb|ADI52861.1| chloroplast beta-carbonic anhydrase [Brassica napus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
TAIR|locus:2084198347 CA1 "carbonic anhydrase 1" [Ar 0.917 0.671 0.619 7e-70
TAIR|locus:2185460331 CA2 "carbonic anhydrase 2" [Ar 0.661 0.507 0.658 4.8e-55
TAIR|locus:2016109280 BCA4 "beta carbonic anhydrase 0.649 0.589 0.524 1.5e-42
TAIR|locus:2034797258 BCA3 "beta carbonic anhydrase 0.622 0.612 0.515 8.7e-40
TAIR|locus:2134218302 BCA5 "beta carbonic anhydrase 0.488 0.410 0.449 4.6e-25
TAIR|locus:2196292290 BCA6 "beta carbonic anhydrase 0.507 0.444 0.446 4.2e-24
TIGR_CMR|GSU_2307211 GSU_2307 "carbonic anhydrase" 0.440 0.530 0.415 4.4e-20
TIGR_CMR|CBU_0139206 CBU_0139 "carbonic anhydrase" 0.433 0.533 0.412 1.1e-18
UNIPROTKB|P0ABE9219 cynT "carbonic anhydrase monom 0.429 0.497 0.390 1.2e-17
TIGR_CMR|CJE_0288211 CJE_0288 "carbonic anhydrase" 0.425 0.511 0.394 4.1e-17
TAIR|locus:2084198 CA1 "carbonic anhydrase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 153/247 (61%), Positives = 170/247 (68%)

Query:     1 MSTASINNWCLTSVSQAQSSLIKSSTLRPSIVARL------------NSPASPPSLIRNE 48
             MSTA ++ + LTS+S +QSSL K S    S VA L            +S  S P+LIRNE
Sbjct:     1 MSTAPLSGFFLTSLSPSQSSLQKLSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNE 60

Query:    49 PVFAAPAPIINPNWREDMANQSYXXXXXXXXXXXXXXXXXXPVAAAKVEQITAQLQT--P 106
             PVFAAPAPII P W E+M  ++Y                   VAAAKVEQITA LQT   
Sbjct:    61 PVFAAPAPIIAPYWSEEMGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTS 120

Query:   107 SDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDF 166
             SD KAFD VE IK+GFI FK+EKYE NPALY ELAKGQSPKYMVFACSDSRVCPSHVLDF
Sbjct:   121 SDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDF 180

Query:   167 QPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFT 226
             QPG+AFVVRN+AN+VPP+D+ K            LHLKV NIVVIGHSACGGIKGLMSF 
Sbjct:   181 QPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFP 240

Query:   227 FDGNNST 233
              DGNNST
Sbjct:   241 LDGNNST 247
GO:0004089 "carbonate dehydratase activity" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015976 "carbon utilization" evidence=IEA;ISS
GO:0009579 "thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009409 "response to cold" evidence=IEP;RCA
GO:0010319 "stromule" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP;RCA
GO:0016020 "membrane" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA
GO:0010037 "response to carbon dioxide" evidence=IGI
GO:0010119 "regulation of stomatal movement" evidence=IGI
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009814 "defense response, incompatible interaction" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2185460 CA2 "carbonic anhydrase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016109 BCA4 "beta carbonic anhydrase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034797 BCA3 "beta carbonic anhydrase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134218 BCA5 "beta carbonic anhydrase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196292 BCA6 "beta carbonic anhydrase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2307 GSU_2307 "carbonic anhydrase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0139 CBU_0139 "carbonic anhydrase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|P0ABE9 cynT "carbonic anhydrase monomer" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0288 CJE_0288 "carbonic anhydrase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P27140CAHC_ARATH4, ., 2, ., 1, ., 10.72170.91330.6685yesno
P27141CAHC_TOBAC4, ., 2, ., 1, ., 10.71180.90150.7133N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.963
4th Layer4.2.1.10.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020732001
RecName- Full=Carbonic anhydrase; EC=4.2.1.1; (324 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00020318001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (164 aa)
•    •• 0.917
GSVIVG00003051001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (814 aa)
      • 0.512
PsbP2
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)
   •  • 0.508
GSVIVG00030064001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (778 aa)
      • 0.507
GSVIVG00024166001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (842 aa)
      • 0.506
GSVIVG00021049001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (760 aa)
      • 0.506

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
PLN03014347 PLN03014, PLN03014, carbonic anhydrase 1e-117
PLN03019330 PLN03019, PLN03019, carbonic anhydrase 3e-98
PLN00416258 PLN00416, PLN00416, carbonate dehydratase 4e-79
cd00884190 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) 5e-64
smart00947154 smart00947, Pro_CA, Carbonic anhydrase 1e-40
cd00382119 cd00382, beta_CA, Carbonic anhydrases (CA) are zin 2e-38
COG0288207 COG0288, CynT, Carbonic anhydrase [Inorganic ion t 8e-38
pfam00484149 pfam00484, Pro_CA, Carbonic anhydrase 4e-35
cd00883182 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) 5e-35
PLN03006301 PLN03006, PLN03006, carbonate dehydratase 6e-35
PLN02154290 PLN02154, PLN02154, carbonic anhydrase 2e-34
cd03378154 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) 4e-24
PRK10437220 PRK10437, PRK10437, carbonic anhydrase; Provisiona 2e-18
cd03379142 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) 1e-07
PRK15219245 PRK15219, PRK15219, carbonic anhydrase; Provisiona 7e-07
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase Back     alignment and domain information 
 Score =  339 bits (869), Expect = e-117
 Identities = 178/247 (72%), Positives = 198/247 (80%), Gaps = 14/247 (5%)

Query: 1   MSTASINNWCLTSVSQAQSSLIKSSTLRPSIVARL------------NSPASPPSLIRNE 48
           MSTA ++ + LTS+S +QSSL K S    S VA L            +S  S P+LIRNE
Sbjct: 1   MSTAPLSGFFLTSLSPSQSSLQKLSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNE 60

Query: 49  PVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQT--P 106
           PVFAAPAPII P W E+M  ++Y+EAIEALKKLL EKE+LK VAAAKVEQITA LQT   
Sbjct: 61  PVFAAPAPIIAPYWSEEMGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTS 120

Query: 107 SDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDF 166
           SD KAFD VE IK+GFI FK+EKYE NPALY ELAKGQSPKYMVFACSDSRVCPSHVLDF
Sbjct: 121 SDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDF 180

Query: 167 QPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFT 226
           QPG+AFVVRN+AN+VPP+D+ KY GVGAA+EYAVLHLKV NIVVIGHSACGGIKGLMSF 
Sbjct: 181 QPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFP 240

Query: 227 FDGNNST 233
            DGNNST
Sbjct: 241 LDGNNST 247

Length = 347
>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|177809 PLN00416, PLN00416, carbonate dehydratase Back     alignment and domain information
>gnl|CDD|238449 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|214929 smart00947, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238224 cd00382, beta_CA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|223365 COG0288, CynT, Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|215941 pfam00484, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238448 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase Back     alignment and domain information
>gnl|CDD|215111 PLN02154, PLN02154, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|239473 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|182460 PRK10437, PRK10437, carbonic anhydrase; Provisional Back     alignment and domain information
>gnl|CDD|239474 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|237927 PRK15219, PRK15219, carbonic anhydrase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 254
PLN03014347 carbonic anhydrase 100.0
PLN03019330 carbonic anhydrase 100.0
PLN00416258 carbonate dehydratase 100.0
PLN03006301 carbonate dehydratase 100.0
KOG1578276 consensus Predicted carbonic anhydrase involved in 100.0
COG0288207 CynT Carbonic anhydrase [Inorganic ion transport a 100.0
cd00883182 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-c 100.0
cd00884190 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-c 100.0
PLN02154290 carbonic anhydrase 100.0
PRK10437220 carbonic anhydrase; Provisional 100.0
PRK15219245 carbonic anhydrase; Provisional 100.0
cd03378154 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-c 100.0
cd00382119 beta_CA Carbonic anhydrases (CA) are zinc-containi 99.95
PF00484153 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Ca 99.95
cd03379142 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-c 99.93
KOG1578 276 consensus Predicted carbonic anhydrase involved in 98.21
>PLN03014 carbonic anhydrase Back     alignment and domain information 
Probab=100.00  E-value=6.2e-80  Score=576.76  Aligned_cols=240  Identities=74%  Similarity=1.098  Sum_probs=223.5

Q ss_pred             CCcccccceeecccccccccccccCCCCc-eEEEeec------------CCCCCCCcccCCccccCCCCccCcchhHHhh
Q 025325            1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLN------------SPASPPSLIRNEPVFAAPAPIINPNWREDMA   67 (254)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (254)
                      |||++|||||+||++++++++++ .++|| ++||+|+            ++++||+||||+||||||+|||||+|+|||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~   79 (347)
T PLN03014          1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG   79 (347)
T ss_pred             CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence            99999999999999999999977 78899 8999996            1133899999999999999999999999999


Q ss_pred             hhcHHHHHHHHHHHhhhhcCcchhHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 025325           68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS  145 (254)
Q Consensus        68 ~~s~~~a~~~l~~~l~~~~~l~~~aa~~v~~~~~el~~~~--~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~  145 (254)
                      ++||||||++|+|||+||++|+++|++||+++|+||++..  ...++|++++|++||++|+++.+..++++|.+|++||+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~  159 (347)
T PLN03014         80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS  159 (347)
T ss_pred             hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence            9999999999999999999999999999999999998632  35689999999999999999999999999999999999


Q ss_pred             CceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHHHHhhhc
Q 025325          146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF  225 (254)
Q Consensus       146 Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~  225 (254)
                      |+++||+|+||||+|+.|||++|||+||+||+||+|+++|...+.+++++|||||.+|+|++|||||||+||||+|+++.
T Consensus       160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~  239 (347)
T PLN03014        160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF  239 (347)
T ss_pred             CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhc
Confidence            99999999999999999999999999999999999999886556678999999999999999999999999999999987


Q ss_pred             ccCCCCCCCcccccee
Q 025325          226 TFDGNNSTYGLICKLI  241 (254)
Q Consensus       226 ~~~g~~~t~fi~~w~~  241 (254)
                      ..+|....++|++|+.
T Consensus       240 ~~~g~~~~~~I~~wl~  255 (347)
T PLN03014        240 PLDGNNSTDFIEDWVK  255 (347)
T ss_pred             cccccccchhHHHHHH
Confidence            7666667789999995

>PLN03019 carbonic anhydrase Back     alignment and domain information
>PLN00416 carbonate dehydratase Back     alignment and domain information
>PLN03006 carbonate dehydratase Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PLN02154 carbonic anhydrase Back     alignment and domain information
>PRK10437 carbonic anhydrase; Provisional Back     alignment and domain information
>PRK15219 carbonic anhydrase; Provisional Back     alignment and domain information
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4 Back     alignment and domain information
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
1ekj_A221 The X-Ray Crystallographic Structure Of Beta Carbon 3e-52
3qy1_A223 1.54a Resolution Crystal Structure Of A Beta-Carbon 3e-14
1ddz_A 496 X-Ray Structure Of A Beta-Carbonic Anhydrase From T 1e-13
3e3g_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant G41a 1e-13
2w3n_A239 Structure And Inhibition Of The Co2-Sensing Carboni 3e-13
2w3q_A243 Structure And Inhibition Of The Co2-Sensing Carboni 3e-13
3e24_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant W39f 3e-13
3e28_A229 H. Influenzae Beta-carbonic Anhydrase, Variant Y181 4e-13
2a8c_A229 Haemophilus Influenzae Beta-Carbonic Anhydrase Leng 4e-13
3mf3_A221 Cobalt(Ii)-Substituted Haemophilus Influenzae B-Car 4e-13
1i6p_A220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 6e-13
1i6o_A220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 6e-13
3e2x_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant V47a 1e-12
3e1v_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant D44n 2e-12
3ucj_A227 Coccomyxa Beta-Carbonic Anhydrase In Complex With A 5e-12
3eyx_A216 Crystal Structure Of Carbonic Anhydrase Nce103 From 1e-09
1ym3_A215 Crystal Structure Of Carbonic Anhydrase Rv3588c Fro 7e-07
2a5v_A213 Crystal Structure Of M. Tuberculosis Beta Carbonic 7e-07
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic Anhydrase From The C3 Dicot Pisum Sativum Length = 221 Back     alignment and structure 
Iteration: 1

 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/121 (76%), Positives = 101/121 (83%)
Query: 113 DSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAF 172
           ++ ERIK GF+HFK+EKY+KNPALY ELAKGQSP +MVFACSDSRVCPSHVLDFQPGEAF
Sbjct: 12  EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAF 71
Query: 173 VVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNS 232
           VVRNVAN+VPPYDQ K            LHLKVSNIVVIGHSACGGIKGL+SF FDG  S
Sbjct: 72  VVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYS 131
Query: 233 T 233
           T
Sbjct: 132 T 132
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic Anhydrase From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 223 Back     alignment and structure
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red Alga, Porphyridium Purpureum R-1 Length = 496 Back     alignment and structure
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a Length = 229 Back     alignment and structure
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 239 Back     alignment and structure
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 243 Back     alignment and structure
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f Length = 229 Back     alignment and structure
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f Length = 229 Back     alignment and structure
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Length = 229 Back     alignment and structure
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic Anhydrase Length = 221 Back     alignment and structure
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a Length = 229 Back     alignment and structure
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n Length = 229 Back     alignment and structure
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Acetazolamide Length = 227 Back     alignment and structure
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From Saccharomyces Cerevisiae Length = 216 Back     alignment and structure
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic Anhydrase, Rv3588c, Tetrameric Form Length = 213 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 2e-62
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 2e-56
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 6e-55
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 2e-54
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 5e-50
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 8e-54
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 4e-53
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 6e-51
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 7e-47
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 6e-29
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 1e-23
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 1e-23
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 8e-23
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Length = 221 Back     alignment and structure
 Score =  194 bits (494), Expect = 2e-62
 Identities = 103/129 (79%), Positives = 113/129 (87%)

Query: 105 TPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVL 164
           +       ++ ERIK GF+HFK+EKY+KNPALY ELAKGQSP +MVFACSDSRVCPSHVL
Sbjct: 4   SSDGIPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVL 63

Query: 165 DFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMS 224
           DFQPGEAFVVRNVAN+VPPYDQ KYAG GAA+EYAVLHLKVSNIVVIGHSACGGIKGL+S
Sbjct: 64  DFQPGEAFVVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLS 123

Query: 225 FTFDGNNST 233
           F FDG  ST
Sbjct: 124 FPFDGTYST 132
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Length = 243 Back     alignment and structure
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Length = 223 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Length = 227 Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Length = 229 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Length = 216 Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Length = 215 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Length = 170 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Length = 204 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} Length = 166 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Length = 172 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 100.0
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 100.0
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 100.0
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 100.0
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 100.0
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 100.0
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 100.0
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 100.0
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 99.97
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 99.97
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 99.96
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Back     alignment and structure
Probab=100.00  E-value=1.2e-42  Score=306.37  Aligned_cols=133  Identities=77%  Similarity=1.224  Sum_probs=120.8

Q ss_pred             CChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCceEEEeecCCCCChhhhcCCCCCceEEEEeccccCCCCCCcc
Q 025325          109 TKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTK  188 (254)
Q Consensus       109 ~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ilg~~pGEaFViRNaGN~V~~~d~~~  188 (254)
                      .+|.+++++|++||++|+++++..++++|++|+++|+|+++||+||||||+|+.+||++|||+||+||+||+|+++|.+.
T Consensus         8 ~~p~~~l~~L~~gN~~f~~~~~~~~~~~~~~La~gQ~P~~lvi~CsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~d~~~   87 (221)
T 1ekj_A            8 IPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAK   87 (221)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcccCHHHHHhhccCCCCcEEEEEeCCCCCCHHHHhCCCCCcEEEEeccCcccCcccccc
Confidence            56888999999999999999988899999999999999999999999999999999999999999999999999988665


Q ss_pred             cchhHHHHHHHHHhcCcceEEEeccCCchHHHHhhhcccCCCCCCCcccccee
Q 025325          189 YAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICKLI  241 (254)
Q Consensus       189 ~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~~~~g~~~t~fi~~w~~  241 (254)
                      +++++++|||||.+|||++|||||||+|||++|++.....+....++++.|+.
T Consensus        88 ~~~~~asleyAv~~L~v~~IvV~GHs~CGav~Aa~~~~~~~~~~~~~i~~wl~  140 (221)
T 1ekj_A           88 YAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVK  140 (221)
T ss_dssp             CHHHHHHHHHHHHTSCCSEEEEEEESSCHHHHHHHHCCCSSCCCSSSHHHHHG
T ss_pred             cchhHHHHHHHHHhcCCCEEEEEccCCCCceeeecccccccccchHHHHHHHH
Confidence            56788999999999999999999999999999999877666666789999984
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Back     alignment and structure
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 254
d1ddza2239 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red 1e-44
d1ekja_210 c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum 3e-41
d1i6pa_214 c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia 4e-36
d1ddza1242 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red a 3e-35
d1g5ca_169 c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Me 1e-21
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 239 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Red alga (Porphyridium purpureum) [TaxId: 35688]

 Score =  148 bits (374), Expect = 1e-44
 Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 4/152 (2%)

Query: 79  KKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYS 138
             L++  +  +    + +E++TA+L   +  K  +   R+     +++++  +++P  +S
Sbjct: 4   APLVQVTKGGESELDSTMEKLTAELVQQTPGKLKEGANRVFVNNENWRQKMLKQDPQFFS 63

Query: 139 ELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEY 198
            LA  Q+P+ +   C+DSRV  + +++   GE FV RN+AN     D +      + ++Y
Sbjct: 64  NLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHRNIANQCIHSDMS----FLSVLQY 119

Query: 199 AVLHLKVSNIVVIGHSACGGIKGLMSFTFDGN 230
           AV +LKV  +VV GH ACGG    +  +  G 
Sbjct: 120 AVQYLKVKRVVVCGHYACGGCAAALGDSRLGL 151
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Length = 210 Back     information, alignment and structure
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 242 Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
d1ddza2239 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1ekja_210 beta-carbonic anhydrase {Pea (Pisum sativum) [TaxI 100.0
d1i6pa_214 beta-carbonic anhydrase {Escherichia coli [TaxId: 100.0
d1ddza1242 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1g5ca_169 beta-carbonic anhydrase {Archaeon Methanobacterium 99.97
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Red alga (Porphyridium purpureum) [TaxId: 35688]

Probab=100.00  E-value=5.8e-44  Score=316.13  Aligned_cols=153  Identities=27%  Similarity=0.413  Sum_probs=139.2

Q ss_pred             HHhhhhcCcchhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCceEEEeecCCCCC
Q 025325           80 KLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVC  159 (254)
Q Consensus        80 ~~l~~~~~l~~~aa~~v~~~~~el~~~~~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~  159 (254)
                      .+++.+++++..++++++++|+|+.........+.+++|++||++|++.++.++|++|++|++||+|+++||+||||||+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n~~~~~~~~~~~p~~f~~la~gQ~P~~~vi~CsDSRv~   84 (239)
T d1ddza2           5 PLVQVTKGGESELDSTMEKLTAELVQQTPGKLKEGANRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGCADSRVP   84 (239)
T ss_dssp             CCCCSSSSCCCHHHHHHHHHHHHHHTSCTTCCCCCSSHHHHHHHHHHHHHHHHCTTHHHHHTTCCCCSEEEEEETTCSSC
T ss_pred             CcceecccchhhHHhhhHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhcCCCCCeEEEeeecCCCC
Confidence            46788999999999999999999976654556678999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCceEEEEeccccCCCCCCcccchhHHHHHHHHHhcCcceEEEeccCCchHHHHhhhcccCCCCCCCccccc
Q 025325          160 PSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTYGLICK  239 (254)
Q Consensus       160 Pe~ilg~~pGEaFViRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVViGHTdCGai~Aal~~~~~g~~~t~fi~~w  239 (254)
                      |+.|||++|||+||+||+||+|++.|.    +++++||||+.+|||++|||||||+||||++++....     .+++..|
T Consensus        85 pe~if~~~~GdlFVvRNaGN~v~~~d~----~~~~sleyAv~~L~v~~IvV~GHt~CGav~aa~~~~~-----~~~~~~~  155 (239)
T d1ddza2          85 ANQIINLPAGEVFVHRNIANQCIHSDM----SFLSVLQYAVQYLKVKRVVVCGHYACGGCAAALGDSR-----LGLIDNW  155 (239)
T ss_dssp             HHHHTTCCTTSEEEEEETTCCCCTTCH----HHHHHHHHHHHTSCCSEEEEEEETTCHHHHHTTSCCC-----CTTHHHH
T ss_pred             HHHHcCCCCCceEEEeeecCcCCCccc----hhhhhhhhhheecCccEEEEecCcCchhhHHHhhccc-----cccchhH
Confidence            999999999999999999999998763    6889999999999999999999999999999986543     4678888


Q ss_pred             ee
Q 025325          240 LI  241 (254)
Q Consensus       240 ~~  241 (254)
                      +.
T Consensus       156 ~~  157 (239)
T d1ddza2         156 LR  157 (239)
T ss_dssp             TH
T ss_pred             HH
Confidence            73
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure