Citrus Sinensis ID: 025326

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCNRLTIYFRMI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccEEEccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHcccccccccccEEEEccccHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHccHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccEEEEEccccccccccHHHHHHHHHHcccccccccccEEEEEEccHHHHHHHHHHHHHccHHHHHHHEHccccHHHHHHHHccHHHccHHccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
MAHQEEIKQFQTLMEDLDDSLKETFKnvhqgnptDTLVRFLKARDWNVSKAHKMLVDCLRWRIENdidnilakpilpaeLYRAVrdsqlvgvsgyskeglpVIAVGVGLSTHDKASVNYYVQSHIQMneyrdrvvlpsaskkhgryigtSLKVLDMTGLKLSALNQIKLMTVITtiddlnypektetyyivnapYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCNRLTIYFRMI
Flexible Loop (DISEMBL)
MAHQEEIKQFQTLMEDLDDSLKETFknvhqgnptDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLpsaskkhgryigtslkvldMTGLKLSALNQIKLMTVIttiddlnypEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQltflsahscnrLTIYFRMI
Low Complexity Region (SEG)
MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCNRLTIYFRMI
Disordered region (IsUnstruct)
*******************************NPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCNRLTIYFR**
Disordered Region (DISOPRED)
*AHQEEIKQFQTLM********ETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCNRLTIYFRMI
Disordered Region (DISEMBL)
MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCNRLTIYFRMI
Disordered Region (DISPRO)
MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCNRLTIYFRMI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCNRLTIYFRMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
P46250	301	SEC14 cytosolic factor OS	N/A	no	0.712	0.601	0.319	4e-18
Q75DK1	308	SEC14 cytosolic factor OS	yes	no	0.712	0.587	0.295	3e-17
P24280	304	SEC14 cytosolic factor OS	yes	no	0.807	0.674	0.273	3e-15
Q0V9N0	707	SEC14-like protein 5 OS=X	yes	no	0.834	0.299	0.273	5e-15
P33324	310	CRAL-TRIO domain-containi	no	no	0.818	0.670	0.272	5e-15
P24859	301	SEC14 cytosolic factor OS	yes	no	0.826	0.697	0.264	1e-14
P58875	403	SEC14-like protein 2 OS=B	no	no	0.755	0.476	0.312	1e-14
Q92503	715	SEC14-like protein 1 OS=H	yes	no	0.759	0.269	0.275	2e-14
P45816	492	SEC14 cytosolic factor OS	yes	no	0.814	0.420	0.284	2e-14
Q9UDX3	406	SEC14-like protein 4 OS=H	no	no	0.716	0.448	0.318	3e-14

>sp|P46250|SEC14_CANAL SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 29/210 (13%)

Query: 36  TLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNIL------AKPILPAELYRAVRDSQL 89
           +L+RFL+AR +++ KA  M V C +WR +  ++ IL       KPI+ A++Y        
Sbjct: 57  SLLRFLRARKFDIQKAIDMFVACEKWREDFGVNTILKDFHYEEKPIV-AKMYPTYYHKT- 114

Query: 90  VGVSGYSKEGLPVIAVGVG---------LSTHDKASVNYYVQSHIQMNEYRDRVVLPSAS 140
                  K+G PV    +G         ++T ++   N  V  +  M +YR    LP+ S
Sbjct: 115 ------DKDGRPVYFEELGKVDLVKMLKITTQERMLKNL-VWEYEAMCQYR----LPACS 163

Query: 141 KKHGRYIGTSLKVLDMTGLKL-SALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSA 199
           +K G  + TS  VLD++G+ + SA N I  +   + I    YPE+   +Y++NAP+ FS 
Sbjct: 164 RKAGYLVETSCTVLDLSGISVTSAYNVIGYVREASKIGQDYYPERMGKFYLINAPFGFST 223

Query: 200 CWKVVKPLLQERTRRKMQVLQGNGRDELLK 229
            +K+ KP L   T  K+ +L  + + ELLK
Sbjct: 224 AFKLFKPFLDPVTVSKIHILGYSYKKELLK 253

Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro.
Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 29/210 (13%)

Query: 36  TLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILA------KPILPAELYRAVRDSQL 89
           TL+RFL+AR ++V+ A  M  +C +WR EN +D I        KP++ A+ Y        
Sbjct: 55  TLLRFLRARKFDVAAARAMFENCEKWRKENGVDTIFEDFHYEEKPLV-AKFYPQYYHKT- 112

Query: 90  VGVSGYSKEGLPVIAVGVG---------LSTHDKASVNYYVQSHIQMNEYRDRVVLPSAS 140
                  K+G PV    +G         ++T ++   N  +  +   + YR    LP++S
Sbjct: 113 ------DKDGRPVYIEELGAVNLTEMYKITTQERMLKNL-IWEYESFSRYR----LPASS 161

Query: 141 KKHGRYIGTSLKVLDMTGLKLSALNQI-KLMTVITTIDDLNYPEKTETYYIVNAPYIFSA 199
           ++    + TS  +LD+ G+ +SA  Q+   +   + I    YPE+   +Y++NAP+ FSA
Sbjct: 162 RQADCLVETSCTILDLKGISISAAAQVLSYVREASNIGQNYYPERMGKFYMINAPFGFSA 221

Query: 200 CWKVVKPLLQERTRRKMQVLQGNGRDELLK 229
            +++ KP L   T  K+ +L  + + ELLK
Sbjct: 222 AFRLFKPFLDPVTVSKIFILGSSYQKELLK 251

Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 40/245 (16%)

Query: 2   AHQEEIKQFQTLMED------LDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKML 55
           A ++ + + + L+ED      LDDS               TL+RFL+AR ++V  A +M 
Sbjct: 32  AQEKALAELRKLLEDAGFIERLDDS---------------TLLRFLRARKFDVQLAKEMF 76

Query: 56  VDCLRWRIENDIDNIL------AKPIL----PAELYRAVRDSQLVGVSGYSKEGLPVIAV 105
            +C +WR +   D IL       KP++    P   ++  +D + V    Y +E   V   
Sbjct: 77  ENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPV----YFEELGAVNLH 132

Query: 106 GVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLS-AL 164
            +   T ++  +   V  +  + +YR    LP+ S+  G  + TS  ++D+ G+ +S A 
Sbjct: 133 EMNKVTSEERMLKNLVWEYESVVQYR----LPACSRAAGHLVETSCTIMDLKGISISSAY 188

Query: 165 NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGR 224
           + +  +   + I    YPE+   +YI+NAP+ FS  +++ KP L   T  K+ +L  + +
Sbjct: 189 SVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQ 248

Query: 225 DELLK 229
            ELLK
Sbjct: 249 KELLK 253

Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro. Essential for viability and secretion.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q0V9N0|S14L5_XENTR SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 7   IKQFQTLMEDLDDSLKETFKNVHQGN-PTDT-LVRFLKARDWNVSKAHKMLVDCLRWRIE 64
           + Q   + E     L++  +  H+G  P D  ++RFL+ARD+N+ KA +ML   L WR +
Sbjct: 244 LGQLTPMQESALIHLRQWLQETHKGKIPKDEHILRFLRARDFNMEKAREMLCQSLSWRKQ 303

Query: 65  NDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVG-LSTHD--KASVNYYV 121
           + +D IL     P    R + +    G   + K+G P+  + +G + T    KA     +
Sbjct: 304 HQVDYILQTWQPP----RVLEEYYAGGWHYHDKDGRPLYILRLGQVDTKGLVKALGEEAI 359

Query: 122 QSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDL 179
             H+       +      +++ GR I +   ++D+ GL +  L +  +K +  I  + + 
Sbjct: 360 LRHVLSINEEGQKRCEENTRQFGRPIWSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEA 419

Query: 180 NYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGN 222
           NYPE      IV AP +F   W +V P + E +R+K  +  GN
Sbjct: 420 NYPETLGRLLIVRAPRVFPVLWTLVSPFINENSRQKFLIYSGN 462

Xenopus tropicalis (taxid: 8364)

>sp|P33324|YKJ1_YEAST CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL091C PE=1 SV=2

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 38/246 (15%)

Query: 3   HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWR 62
            +E + QF++++  L+ + KE   +        TL+RFL+AR ++++ + +M V+  RWR
Sbjct: 29  QEEALLQFRSIL--LEKNYKERLDD-------STLLRFLRARKFDINASVEMFVETERWR 79

Query: 63  IENDIDNILAKPILPAELYRAVRDSQLVGVSGY--------SKEGLPVIAV---GVGLS- 110
            E   + I+       E  +   D + + ++           K+G P+      G+ L  
Sbjct: 80  EEYGANTIIED----YENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKK 135

Query: 111 ----THDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ 166
               T +K  +   V+ +     YR    +P+ S++ G  I TS  VLD+ G+ LS  N 
Sbjct: 136 MYKITTEKQMLRNLVKEYELFATYR----VPACSRRAGYLIETSCTVLDLKGISLS--NA 189

Query: 167 IKLMTVITTIDDLN---YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNG 223
             +++ I  + D++   YPE+   +YI+++P+ FS  +K+VKP L   T  K+ +L  + 
Sbjct: 190 YHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSY 249

Query: 224 RDELLK 229
           + ELLK
Sbjct: 250 KKELLK 255

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P24859|SEC14_KLULA SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 28/238 (11%)

Query: 3   HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWR 62
            + ++K+F+ L+E L    KE   +        TL+RFL+AR +++  +  M  +C +WR
Sbjct: 31  QEAKLKEFRELLESL--GYKERLDD-------STLLRFLRARKFDLEASKIMYENCEKWR 81

Query: 63  IENDIDNILA------KPIL----PAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTH 112
            E  +D I        KP++    P   ++   D + V +       L  +     ++T 
Sbjct: 82  KEFGVDTIFEDFHYEEKPLVAKYYPQYYHKTDNDGRPVYIEELGSVNLTQM---YKITTQ 138

Query: 113 DKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQI-KLMT 171
           ++   N  V  +     YR    LP+ S+K G  + TS  +LD+ G+ +S+  Q+   + 
Sbjct: 139 ERMLKNL-VWEYEAFVRYR----LPACSRKAGYLVETSCTILDLKGISISSAAQVLSYVR 193

Query: 172 VITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLK 229
             + I    YPE+   +Y++NAP+ FS  +++ KP L   T  K+ +L  + + +LLK
Sbjct: 194 EASNIGQNYYPERMGKFYLINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKDLLK 251

Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|P58875|S14L2_BOVIN SEC14-like protein 2 OS=Bos taurus GN=SEC14L2 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 13/205 (6%)

Query: 32  NPTDT-LVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLV 90
           NP D  L+R+L+AR++N+ K+  ML   + +R + DIDNI++    P E+   V+     
Sbjct: 32  NPDDYFLLRWLRARNFNLQKSEAMLRKHVEFRKQKDIDNIMS--WQPPEV---VQQYLSG 86

Query: 91  GVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSA----SKKHGRY 146
           G+ GY  EG P+    +G     K  +    +  +   + RD  +L       ++K G+ 
Sbjct: 87  GMCGYDLEGSPIWYDIIG-PLDAKGLLLSASKQDLFKTKMRDCELLLQECVRQTEKMGKK 145

Query: 147 IGTSLKVLDMTGLKLSAL--NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204
           I  +  + D  GL L  L    ++       + + NYPE  +  +IV AP +F   + +V
Sbjct: 146 IEATTLIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFIVKAPKLFPVAYNLV 205

Query: 205 KPLLQERTRRKMQVLQGNGRDELLK 229
           KP L E TR+K+QVL  N ++ LLK
Sbjct: 206 KPFLSEDTRKKIQVLGANWKEVLLK 230

Carrier protein. Binds to some hydrophobic molecules and promotes their transfer between the different cellular sites. Binds with high affinity to alpha-tocopherol. Also binds with a weaker affinity to other tocopherols and to tocotrienols. May have a transcriptional activatory activity via its association with alpha-tocopherol. Probably recognizes and binds some squalene structure, suggesting that it may regulate cholesterol biosynthesis by increasing the transfer of squalene to a metabolic active pool in the cell.

Bos taurus (taxid: 9913)

>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 21/214 (9%)

Query: 21  LKETFKNVHQGN-PTDT-LVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPA 78
           L++  +  H+G  P D  ++RFL+ARD+N+ KA +++   L WR ++ +D IL     P 
Sbjct: 262 LRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILETWTPP- 320

Query: 79  ELYRAVRDSQLVGVSGYSKEGLPVIAVGVGL--------STHDKASVNYYVQSHIQMNEY 130
              + ++D    G   + K+G P+  + +G         +  ++A + Y     + +NE 
Sbjct: 321 ---QVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYV----LSINEE 373

Query: 131 RDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETY 188
             R      +K  GR I +   ++D+ GL +  L +  +K +  I  + + NYPE     
Sbjct: 374 GLRRC-EENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRL 432

Query: 189 YIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGN 222
            I+ AP +F   W +V P + + TRRK  +  GN
Sbjct: 433 LILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGN 466

Homo sapiens (taxid: 9606)

>sp|P45816|SEC14_YARLI SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 18/225 (8%)

Query: 36  TLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGY 95
           TL+RFL+AR ++V  A +M  +C +WR E   + IL         Y+  ++   +    Y
Sbjct: 56  TLLRFLRARKFDVPLAQEMWENCEKWRKEFGTNTILED-----FWYKEKKEVAKLYPQYY 110

Query: 96  ---SKEGLPVIAVGVG-LSTHDKASVNYYVQSHIQMN---EYRD--RVVLPSASKKHGRY 146
               K+G PV    VG ++ H+   +    Q  +  N   EY    R  LP+ S+  G  
Sbjct: 111 HKTDKDGRPVYVENVGKVNIHEMYKIT--TQERMLRNLVWEYESFVRHRLPACSRVVGHL 168

Query: 147 IGTSLKVLDMTGLKLSALNQI-KLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 205
           I TS  +LD+ G+ LS+ +Q+   +   + I    YPE+   +Y++NAP+ FS  + V+K
Sbjct: 169 IETSCTILDLKGVSLSSASQVYGFLKDASNIGQNYYPERMGKFYLINAPFGFSTVFSVIK 228

Query: 206 PLLQERTRRKMQVLQGNGRDELLKVRQLFQLTF-LSAHSCNRLTI 249
             L   T  K+ V   N +++LL     + L       S +++ +
Sbjct: 229 RFLDPVTVSKIHVYGSNYKEKLLAQVPAYNLPIKFGGQSSSKIGV 273

Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q9UDX3|S14L4_HUMAN SEC14-like protein 4 OS=Homo sapiens GN=SEC14L4 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 22/204 (10%)

Query: 37  LVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILA-KPILPAELYRAVRDSQLVGVSGY 95
           L+R+L+AR++++ K+  ML   + +R + D+DNI+  +P    +LY    DS   G+ GY
Sbjct: 38  LLRWLRARNFDLQKSEDMLRRHMEFRKQQDLDNIVTWQPPEVIQLY----DSG--GLCGY 91

Query: 96  SKEGLPVIAVGVGLSTHDK-----ASVNYYVQSHIQMNEYRDRVVLPSA---SKKHGRYI 147
             EG PV    +G S   K     AS    ++  I++ E    ++L      ++K GR I
Sbjct: 92  DYEGCPVYFNIIG-SLDPKGLLLSASKQDMIRKRIKVCE----LLLHECELQTQKLGRKI 146

Query: 148 GTSLKVLDMTGLKLSAL--NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 205
             +L V DM GL L  L    +++     +I + NYPE  +   ++ AP +F   + +VK
Sbjct: 147 EMALMVFDMEGLSLKHLWKPAVEVYQQFFSILEANYPETLKNLIVIRAPKLFPVAFNLVK 206

Query: 206 PLLQERTRRKMQVLQGNGRDELLK 229
             + E TRRK+ +L  N + EL K
Sbjct: 207 SFMSEETRRKIVILGDNWKQELTK 230

Probable hydrophobic ligand-binding protein; may play a role in the transport of hydrophobic ligands like tocopherol, squalene and phospholipids.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
449461049	337	PREDICTED: SEC14 cytosolic factor-like [	0.905	0.682	0.808	1e-109
255579158	336	SEC14 cytosolic factor, putative [Ricinu	0.940	0.711	0.748	1e-106
225461961	338	PREDICTED: SEC14-like protein 5 [Vitis v	0.952	0.715	0.760	1e-106
359494856	338	PREDICTED: SEC14 cytosolic factor-like [	0.940	0.707	0.736	1e-105
224061236	337	predicted protein [Populus trichocarpa]	0.901	0.679	0.769	1e-105
297847948	325	SEC14 cytosolic factor [Arabidopsis lyra	0.952	0.744	0.723	1e-105
147822313	338	hypothetical protein VITISV_000011 [Viti	0.905	0.680	0.791	1e-103
15222786	325	sec.4-like phosphatidylinositol transfer	0.952	0.744	0.719	1e-103
356527167	338	PREDICTED: SEC14 cytosolic factor-like [	0.897	0.674	0.756	1e-103
351722583	324	polyphosphoinositide binding protein Ssh	0.952	0.746	0.719	1e-102

>gi|449461049|ref|XP_004148256.1| PREDICTED: SEC14 cytosolic factor-like [Cucumis sativus] gi|449523143|ref|XP_004168584.1| PREDICTED: SEC14 cytosolic factor-like [Cucumis sativus]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/230 (80%), Positives = 214/230 (93%)

Query: 1   MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLR 60
           +A++E +KQFQ LME++D SLK TF+ +HQG+P +TL RFLKARDWN++KAHKML+DCL 
Sbjct: 3   IANREAMKQFQLLMEEVDGSLKNTFEIMHQGHPAETLERFLKARDWNLAKAHKMLIDCLH 62

Query: 61  WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 120
           WRI+N+IDNILAKPI+P ELYRAVRDSQLVG+SGYSKEGLPVIAVGVG ST DKASV+YY
Sbjct: 63  WRIQNEIDNILAKPIIPTELYRAVRDSQLVGLSGYSKEGLPVIAVGVGQSTFDKASVHYY 122

Query: 121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 180
           VQSHIQMNEYRDRVVLP+A+KKHGR+I T LKVLDMTGLKLSALNQIKL+TVI+TIDDLN
Sbjct: 123 VQSHIQMNEYRDRVVLPAATKKHGRHISTCLKVLDMTGLKLSALNQIKLLTVISTIDDLN 182

Query: 181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKV 230
           YPEKT+TYYIVN PY+FSACWKVVKPLLQERTR+K+QVLQ  GRDELLK+
Sbjct: 183 YPEKTDTYYIVNVPYVFSACWKVVKPLLQERTRKKIQVLQNCGRDELLKI 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579158|ref|XP_002530426.1| SEC14 cytosolic factor, putative [Ricinus communis] gi|223530034|gb|EEF31957.1| SEC14 cytosolic factor, putative [Ricinus communis]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/243 (74%), Positives = 216/243 (88%), Gaps = 4/243 (1%)

Query: 4   QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRI 63
           +E + QF+ LM+ +++SL++T++NVHQG  T+TLVRFLKAR+WNV+KAHKMLVDCL WRI
Sbjct: 6   EEAVNQFRELMDQVEESLQKTYQNVHQGCQTETLVRFLKAREWNVTKAHKMLVDCLHWRI 65

Query: 64  ENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQS 123
           +N+IDNIL KPI+P +LYRAVRDSQL+G+SGYS+EGLPV A+GVGLST DKASV+YYVQS
Sbjct: 66  QNEIDNILTKPIIPTDLYRAVRDSQLIGMSGYSREGLPVFAIGVGLSTFDKASVHYYVQS 125

Query: 124 HIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPE 183
           HIQ+NEYRDRV+LPSASKKHGR I T +KVLDMTGLKLSAL+QIKL+T+I+TIDDLNYPE
Sbjct: 126 HIQINEYRDRVILPSASKKHGRSITTCVKVLDMTGLKLSALSQIKLLTIISTIDDLNYPE 185

Query: 184 KTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHS 243
           KT+TYYIVNAPYIFSACWKVVKPLLQERTR+K+QVL GNGRDELLK+     L     H 
Sbjct: 186 KTKTYYIVNAPYIFSACWKVVKPLLQERTRKKVQVLSGNGRDELLKIMDFASL----PHF 241

Query: 244 CNR 246
           C R
Sbjct: 242 CRR 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461961|ref|XP_002270197.1| PREDICTED: SEC14-like protein 5 [Vitis vinifera] gi|296089941|emb|CBI39760.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/246 (76%), Positives = 213/246 (86%), Gaps = 4/246 (1%)

Query: 1   MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLR 60
           + +QE +KQ Q L+++++++LK +F+NVHQG   +TL RFLKARD NV KAHKMLVDCL 
Sbjct: 3   IVNQEAVKQLQLLLDEVEETLKNSFENVHQGYVRETLARFLKARDGNVPKAHKMLVDCLN 62

Query: 61  WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 120
           WRI+N+IDNIL KPILP  LYRAVRDSQL G+SGY+KEGLPVIAVGVG ST DKASV+YY
Sbjct: 63  WRIQNEIDNILTKPILPPNLYRAVRDSQLTGLSGYTKEGLPVIAVGVGQSTFDKASVHYY 122

Query: 121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 180
           VQSHIQMNEYRDRVVLP+A+KKHGRYIGT +KVLDMTGLKLSALNQIKL+TVI+TIDDLN
Sbjct: 123 VQSHIQMNEYRDRVVLPAATKKHGRYIGTCVKVLDMTGLKLSALNQIKLLTVISTIDDLN 182

Query: 181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLS 240
           YPEKT+TYYIVN PYIFSACWKVVKPLLQERTRRK+QVLQG GRDELLK+     L    
Sbjct: 183 YPEKTDTYYIVNVPYIFSACWKVVKPLLQERTRRKVQVLQGCGRDELLKIMDYASL---- 238

Query: 241 AHSCNR 246
            H C R
Sbjct: 239 PHFCRR 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494856|ref|XP_002273868.2| PREDICTED: SEC14 cytosolic factor-like [Vitis vinifera] gi|296083523|emb|CBI23513.3| unnamed protein product [Vitis vinifera]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/243 (73%), Positives = 210/243 (86%), Gaps = 4/243 (1%)

Query: 4   QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRI 63
           ++ + QF+ LM  +D+ LK+TF+N+HQG PT TLVRFLKAR+WNV KAHKMLVDCL WR+
Sbjct: 6   EDAVNQFEALMNQVDEPLKKTFQNIHQGYPTGTLVRFLKAREWNVPKAHKMLVDCLNWRV 65

Query: 64  ENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQS 123
           ENDIDNILAKPI+P +LYR VRDSQL+G+SGY+KEGLPV A+G G ST DKASV+YYVQS
Sbjct: 66  ENDIDNILAKPIVPTDLYRGVRDSQLIGLSGYTKEGLPVFAIGAGFSTFDKASVHYYVQS 125

Query: 124 HIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPE 183
           HIQ+NEYRDRV+LPSASKKHGR+I + +KVLDMTGLKLSAL+QIKL+T+++TIDDLNYPE
Sbjct: 126 HIQINEYRDRVILPSASKKHGRHITSCVKVLDMTGLKLSALSQIKLLTIMSTIDDLNYPE 185

Query: 184 KTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHS 243
           KT TYYIVNAPYIFSACWKVVKPLLQERTR+K+QVL G GRDELLK+     L     H 
Sbjct: 186 KTNTYYIVNAPYIFSACWKVVKPLLQERTRKKIQVLPGCGRDELLKIMDYASL----PHF 241

Query: 244 CNR 246
           C R
Sbjct: 242 CRR 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061236|ref|XP_002300384.1| predicted protein [Populus trichocarpa] gi|222847642|gb|EEE85189.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 177/230 (76%), Positives = 214/230 (93%), Gaps = 1/230 (0%)

Query: 2   AHQEE-IKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLR 60
           A+Q++ IKQ Q++M+ +D+S+K T++N+HQG PT+TLVRFLKARDWNV+KAHKMLVDCL 
Sbjct: 5   ANQDQAIKQLQSIMDQIDESMKNTYQNMHQGYPTETLVRFLKARDWNVAKAHKMLVDCLE 64

Query: 61  WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 120
           WRI+N ID++LAKPI+P+ LYRAVRDSQL+G+SGYSKEGLP+I +G GLST DKASV+YY
Sbjct: 65  WRIQNKIDDMLAKPIIPSNLYRAVRDSQLLGLSGYSKEGLPIITIGAGLSTFDKASVHYY 124

Query: 121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 180
           VQSHIQ+NEYRDRV+LP+A+KK+GR+I T LKVLDMTGLKLSALN +KL+T ++TIDDLN
Sbjct: 125 VQSHIQINEYRDRVILPTATKKYGRHISTCLKVLDMTGLKLSALNHLKLLTTMSTIDDLN 184

Query: 181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKV 230
           YPEKTETYYIVNAPYIFSACWKVVKPLLQERTR+K+QVLQG GRDELLK+
Sbjct: 185 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRKKIQVLQGCGRDELLKI 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847948|ref|XP_002891855.1| SEC14 cytosolic factor [Arabidopsis lyrata subsp. lyrata] gi|297337697|gb|EFH68114.1| SEC14 cytosolic factor [Arabidopsis lyrata subsp. lyrata]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/246 (72%), Positives = 214/246 (86%), Gaps = 4/246 (1%)

Query: 1   MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLR 60
           + ++E +KQ + LMED+DDSL+E+++N+HQG  T+TL RFLKARDWNV KAHKML++CL 
Sbjct: 3   ITNEEAVKQLRALMEDVDDSLRESYRNIHQGYTTETLSRFLKARDWNVQKAHKMLLECLE 62

Query: 61  WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 120
           WR +N+ID ILAKPI+P +LYRA+RD+QLVGVSGYSKEGLPVIA+GVGLST+DKASV+YY
Sbjct: 63  WRTQNEIDKILAKPIVPVDLYRAIRDTQLVGVSGYSKEGLPVIAIGVGLSTYDKASVHYY 122

Query: 121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 180
           +QSHIQMNEYRDRVVLPSA+KK GR I T LK+LDM+GLKLSAL+QIKLMT ITTIDDLN
Sbjct: 123 IQSHIQMNEYRDRVVLPSATKKQGRPICTCLKILDMSGLKLSALSQIKLMTAITTIDDLN 182

Query: 181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLS 240
           YPEKTETYY+VN PYIFSACWK +KPLLQERT++K+QVL+G G+DELLK+     L    
Sbjct: 183 YPEKTETYYVVNVPYIFSACWKTIKPLLQERTKKKIQVLKGCGKDELLKIMDYESL---- 238

Query: 241 AHSCNR 246
            H C R
Sbjct: 239 PHFCRR 244

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822313|emb|CAN64059.1| hypothetical protein VITISV_000011 [Vitis vinifera]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/230 (79%), Positives = 206/230 (89%)

Query: 1   MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLR 60
           + +QE +KQ Q L++++++ LK +F NVHQG   +TL RFLKARD NV KAHKMLVDCL 
Sbjct: 3   IVNQEAVKQXQLLLDEVEEPLKNSFXNVHQGYVRETLARFLKARDGNVPKAHKMLVDCLN 62

Query: 61  WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 120
           WRI+N+IDNIL KPILP  LYRAVRDSQL G+SGY+KEGLPVIAVGVG ST DKASV+YY
Sbjct: 63  WRIQNEIDNILVKPILPPNLYRAVRDSQLTGLSGYTKEGLPVIAVGVGQSTFDKASVHYY 122

Query: 121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 180
           VQSHIQMNEYRDRVVLP+A+KK GRYIGT +KVLDMTGLKLSALNQIKL+TVI+TIDDLN
Sbjct: 123 VQSHIQMNEYRDRVVLPAATKKXGRYIGTCVKVLDMTGLKLSALNQIKLLTVISTIDDLN 182

Query: 181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKV 230
           YPEKT+TYYIVN PYIFSACWKVVKPLLQERTRRK+QVLQG GRDELLK+
Sbjct: 183 YPEKTDTYYIVNVPYIFSACWKVVKPLLQERTRRKVQVLQGCGRDELLKI 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222786|ref|NP_175980.1| sec.4-like phosphatidylinositol transfer protein [Arabidopsis thaliana] gi|16930447|gb|AAL31909.1|AF419577_1 At1g55840/F14J16_2 [Arabidopsis thaliana] gi|19310517|gb|AAL84992.1| At1g55840/F14J16_2 [Arabidopsis thaliana] gi|332195185|gb|AEE33306.1| sec.4-like phosphatidylinositol transfer protein [Arabidopsis thaliana]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/246 (71%), Positives = 212/246 (86%), Gaps = 4/246 (1%)

Query: 1   MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLR 60
           + ++E +KQ + LMED+DDSL+E+++N+HQG PT+ L+RFLKARD NV KAHKML++CL 
Sbjct: 3   ITNEEAVKQLRALMEDVDDSLRESYRNIHQGYPTENLLRFLKARDGNVQKAHKMLLECLE 62

Query: 61  WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 120
           WR +N+ID IL KPI+P +LYR +RD+QLVGVSGYSKEGLPVIA+GVGLST+DKASV+YY
Sbjct: 63  WRTQNEIDKILTKPIVPVDLYRGIRDTQLVGVSGYSKEGLPVIAIGVGLSTYDKASVHYY 122

Query: 121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 180
           VQSHIQMNEYRDRVVLPSASKK GR I T LK+LDM+GLKLSAL+QIKLMT ITTIDDLN
Sbjct: 123 VQSHIQMNEYRDRVVLPSASKKQGRPICTCLKILDMSGLKLSALSQIKLMTAITTIDDLN 182

Query: 181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLS 240
           YPEKTETYY+VN PYIFSACWK +KPLLQERT++K+QVL+G G+DELLK+     L    
Sbjct: 183 YPEKTETYYVVNVPYIFSACWKTIKPLLQERTKKKIQVLKGCGKDELLKIMDYESL---- 238

Query: 241 AHSCNR 246
            H C R
Sbjct: 239 PHFCRR 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527167|ref|XP_003532184.1| PREDICTED: SEC14 cytosolic factor-like [Glycine max]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/230 (75%), Positives = 210/230 (91%), Gaps = 2/230 (0%)

Query: 2   AHQEEIKQFQTLMEDLDDS-LKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLR 60
            +QE +KQ QTLME++DD  LK TF+ +HQG  T+TL+RFLKARDWN++KAHKML+DCL 
Sbjct: 4   GNQEAVKQLQTLMENVDDEQLKNTFQIMHQGYQTETLIRFLKARDWNIAKAHKMLIDCLN 63

Query: 61  WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 120
           WR+EN+IDN+L KPI P +LYRA+RDSQL+G+SGYSKEGLPVIAVGVGLST+DKAS  YY
Sbjct: 64  WRVENEIDNVLRKPI-PMDLYRAIRDSQLIGMSGYSKEGLPVIAVGVGLSTYDKASDKYY 122

Query: 121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 180
           +QSHIQ+NEYRD+V+LP+A++KHGRYIGT +KVLDMTGLK SALNQ++L+T I+TIDDLN
Sbjct: 123 IQSHIQLNEYRDQVILPTATRKHGRYIGTCVKVLDMTGLKFSALNQLRLLTAISTIDDLN 182

Query: 181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKV 230
           YPEKT+TYYIVN PY+FSACWKVVKPLLQERTRRK+QVLQG G++ELLKV
Sbjct: 183 YPEKTDTYYIVNVPYVFSACWKVVKPLLQERTRRKIQVLQGCGKEELLKV 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722583|ref|NP_001237505.1| polyphosphoinositide binding protein Ssh1p [Glycine max] gi|2739044|gb|AAB94598.1| polyphosphoinositide binding protein Ssh1p [Glycine max]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/246 (71%), Positives = 211/246 (85%), Gaps = 4/246 (1%)

Query: 1   MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLR 60
           +  Q+ IKQFQ  ++ +++ L+ TF+NVHQG  T+TL+RFLKARDW+  KAHKMLVDCL 
Sbjct: 3   VGSQDAIKQFQAFIDQVEEPLRTTFQNVHQGFVTETLMRFLKARDWDPCKAHKMLVDCLN 62

Query: 61  WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 120
           WR++N+IDNIL+KPI+PA+LYRAVRDSQL+G+SGYS+EGLPV A+GVGLST DKASV+YY
Sbjct: 63  WRVQNEIDNILSKPIVPADLYRAVRDSQLIGLSGYSREGLPVFAIGVGLSTFDKASVHYY 122

Query: 121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 180
           VQSHIQ+NEYR+R++LPSASKK GR I T +KVLDMTGLKLSALNQIKL+T+I++IDDLN
Sbjct: 123 VQSHIQINEYRERIILPSASKKQGRPITTCIKVLDMTGLKLSALNQIKLLTIISSIDDLN 182

Query: 181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLS 240
           YPEKT TYYIVNAPYIFSACWKVVKPLLQERTRRK+QVL G GRDELL +     L    
Sbjct: 183 YPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRRKIQVLPGCGRDELLTIMDYSSL---- 238

Query: 241 AHSCNR 246
            H C R
Sbjct: 239 PHFCRR 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2012040	325	AT1G55840 "AT1G55840" [Arabido	0.952	0.744	0.719	2.6e-95
TAIR|locus:2160892	341	AT5G47730 "AT5G47730" [Arabido	0.917	0.683	0.725	1.9e-90
CGD|CAL0003685	301	SEC14 [Candida albicans (taxid	0.740	0.624	0.325	2.8e-18
UNIPROTKB|P46250	301	SEC14 "SEC14 cytosolic factor"	0.740	0.624	0.325	2.8e-18
TAIR|locus:2115265	543	SFH12 "AT4G36490" [Arabidopsis	0.913	0.427	0.286	1.2e-17
TAIR|locus:2169038	376	AT5G47510 "AT5G47510" [Arabido	0.822	0.555	0.292	2.4e-17
TAIR|locus:2136303	554	SEC14 "SECRETION 14" [Arabidop	0.866	0.397	0.297	2.7e-17
TAIR|locus:2139564	554	COW1 "CAN OF WORMS1" [Arabidop	0.866	0.397	0.282	4.5e-17
UNIPROTKB|E2RM46	406	SEC14L4 "Uncharacterized prote	0.736	0.460	0.326	5.4e-17
TAIR|locus:2053114	558	AT2G18180 "AT2G18180" [Arabido	0.913	0.415	0.282	7.6e-17

TAIR|locus:2012040 AT1G55840 "AT1G55840" [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
 Identities = 177/246 (71%), Positives = 212/246 (86%)

Query:     1 MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLR 60
             + ++E +KQ + LMED+DDSL+E+++N+HQG PT+ L+RFLKARD NV KAHKML++CL 
Sbjct:     3 ITNEEAVKQLRALMEDVDDSLRESYRNIHQGYPTENLLRFLKARDGNVQKAHKMLLECLE 62

Query:    61 WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 120
             WR +N+ID IL KPI+P +LYR +RD+QLVGVSGYSKEGLPVIA+GVGLST+DKASV+YY
Sbjct:    63 WRTQNEIDKILTKPIVPVDLYRGIRDTQLVGVSGYSKEGLPVIAIGVGLSTYDKASVHYY 122

Query:   121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 180
             VQSHIQMNEYRDRVVLPSASKK GR I T LK+LDM+GLKLSAL+QIKLMT ITTIDDLN
Sbjct:   123 VQSHIQMNEYRDRVVLPSASKKQGRPICTCLKILDMSGLKLSALSQIKLMTAITTIDDLN 182

Query:   181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLS 240
             YPEKTETYY+VN PYIFSACWK +KPLLQERT++K+QVL+G G+DELLK+     L    
Sbjct:   183 YPEKTETYYVVNVPYIFSACWKTIKPLLQERTKKKIQVLKGCGKDELLKIMDYESLP--- 239

Query:   241 AHSCNR 246
              H C R
Sbjct:   240 -HFCRR 244

GO:0005215 "transporter activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=ISS

TAIR|locus:2160892 AT5G47730 "AT5G47730" [Arabidopsis thaliana (taxid:3702)]

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 169/233 (72%), Positives = 203/233 (87%)

Query:     4 QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRI 63
             +E I +FQ LM+ +++ LK+T++ VHQG   + L RFLKARDWNV KAH MLV+CLRWR+
Sbjct:     6 EEAIDEFQELMDQVEEPLKKTYERVHQGYLRENLGRFLKARDWNVCKAHTMLVECLRWRV 65

Query:    64 ENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQS 123
             +N+ID+IL+KPI+P ELYR VRDSQL+G+SGY+KEGLPV A+GVGLST DKASV+YYVQS
Sbjct:    66 DNEIDSILSKPIVPTELYRDVRDSQLIGMSGYTKEGLPVFAIGVGLSTFDKASVHYYVQS 125

Query:   124 HIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPE 183
             HIQ+NEYRDRV+LPS SKK+GR I T +KVLDMTGLKLSAL+QIKL+T+I+TIDDLNYPE
Sbjct:   126 HIQINEYRDRVLLPSISKKNGRPITTCVKVLDMTGLKLSALSQIKLVTIISTIDDLNYPE 185

Query:   184 KTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQL 236
             KT TYY+VNAPYIFSACWKVVKPLLQERTR+K+ VL G GRDELLK+     L
Sbjct:   186 KTNTYYVVNAPYIFSACWKVVKPLLQERTRKKVHVLSGCGRDELLKIMDFTSL 238

GO:0005215 "transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

CGD|CAL0003685 SEC14 [Candida albicans (taxid:5476)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 66/203 (32%), Positives = 109/203 (53%)

Query:    36 TLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILA------KPILPAELYRAV-RDSQ 88
             +L+RFL+AR +++ KA  M V C +WR +  ++ IL       KPI+ A++Y      + 
Sbjct:    57 SLLRFLRARKFDIQKAIDMFVACEKWREDFGVNTILKDFHYEEKPIV-AKMYPTYYHKTD 115

Query:    89 LVGVSGYSKE-GLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYI 147
               G   Y +E G   +   + ++T ++   N  V  +  M +YR    LP+ S+K G  +
Sbjct:   116 KDGRPVYFEELGKVDLVKMLKITTQERMLKNL-VWEYEAMCQYR----LPACSRKAGYLV 170

Query:   148 GTSLKVLDMTGLKL-SALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKP 206
              TS  VLD++G+ + SA N I  +   + I    YPE+   +Y++NAP+ FS  +K+ KP
Sbjct:   171 ETSCTVLDLSGISVTSAYNVIGYVREASKIGQDYYPERMGKFYLINAPFGFSTAFKLFKP 230

Query:   207 LLQERTRRKMQVLQGNGRDELLK 229
              L   T  K+ +L  + + ELLK
Sbjct:   231 FLDPVTVSKIHILGYSYKKELLK 253

GO:0006657 "CDP-choline pathway" evidence=IGI

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=IGI

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0008526 "phosphatidylinositol transporter activity" evidence=ISS

GO:0051286 "cell tip" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005628 "prospore membrane" evidence=IEA

GO:0008525 "phosphatidylcholine transporter activity" evidence=IEA

GO:0006896 "Golgi to vacuole transport" evidence=IEA

GO:2001246 "negative regulation of phosphatidylcholine biosynthetic process" evidence=IEA

GO:0048194 "Golgi vesicle budding" evidence=IEA

GO:0046488 "phosphatidylinositol metabolic process" evidence=IEA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=IEA

GO:0031321 "ascospore-type prospore assembly" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0015914 "phospholipid transport" evidence=IEA

GO:0033205 "cell cycle cytokinesis" evidence=IEA

GO:0010570 "regulation of filamentous growth" evidence=IEA

UNIPROTKB|P46250 SEC14 "SEC14 cytosolic factor" [Candida albicans SC5314 (taxid:237561)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 66/203 (32%), Positives = 109/203 (53%)

Query:    36 TLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILA------KPILPAELYRAV-RDSQ 88
             +L+RFL+AR +++ KA  M V C +WR +  ++ IL       KPI+ A++Y      + 
Sbjct:    57 SLLRFLRARKFDIQKAIDMFVACEKWREDFGVNTILKDFHYEEKPIV-AKMYPTYYHKTD 115

Query:    89 LVGVSGYSKE-GLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYI 147
               G   Y +E G   +   + ++T ++   N  V  +  M +YR    LP+ S+K G  +
Sbjct:   116 KDGRPVYFEELGKVDLVKMLKITTQERMLKNL-VWEYEAMCQYR----LPACSRKAGYLV 170

Query:   148 GTSLKVLDMTGLKL-SALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKP 206
              TS  VLD++G+ + SA N I  +   + I    YPE+   +Y++NAP+ FS  +K+ KP
Sbjct:   171 ETSCTVLDLSGISVTSAYNVIGYVREASKIGQDYYPERMGKFYLINAPFGFSTAFKLFKP 230

Query:   207 LLQERTRRKMQVLQGNGRDELLK 229
              L   T  K+ +L  + + ELLK
Sbjct:   231 FLDPVTVSKIHILGYSYKKELLK 253

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0006657 "CDP-choline pathway" evidence=IGI

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=IGI

GO:0008526 "phosphatidylinositol transporter activity" evidence=ISS

TAIR|locus:2115265 SFH12 "AT4G36490" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 71/248 (28%), Positives = 112/248 (45%)

Query:     5 EEIKQFQTLMEDL--DDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWR 62
             EE+K      + L  D+ L E   + H       ++RFLKAR +++ K  +M  + LRWR
Sbjct:    51 EELKAVDAFRQSLILDELLPEKHDDYHM------MLRFLKARKFDLEKTKQMWTEMLRWR 104

Query:    63 IENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVN 118
              E   D ++ +     E+   ++     G  G  KEG PV    +GL    K     +++
Sbjct:   105 KEFGADTVMEEFDFK-EIDEVLKYYPQ-GHHGVDKEGRPVYIERLGLVDSTKLMQVTTMD 162

Query:   119 YYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIK--LMTVITTI 176
              YV  H+   E    V  P+ S    ++I  S  +LD+ G+ L   N+    L+T +  +
Sbjct:   163 RYVNYHVMEFERTFNVKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAARDLITRLQKV 222

Query:   177 DDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQL 236
             D  NYPE     +I+NA   F   W  VK  L  +T  K+ VL    + +LL++    +L
Sbjct:   223 DGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDESEL 282

Query:   237 TFLSAHSC 244
                   SC
Sbjct:   283 PEFLGGSC 290

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0008526 "phosphatidylinositol transporter activity" evidence=IGI

TAIR|locus:2169038 AT5G47510 "AT5G47510" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 64/219 (29%), Positives = 109/219 (49%)

Query:    35 DTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSG 94
             +TL RFLK RD+++ K+ +  ++ ++WR++  +D I  K     E Y  V+     G   
Sbjct:    49 NTLRRFLKMRDFDLEKSKEAFLNYMKWRVDYKVDLISQK--FKFEEYGEVKKHYPHGFHK 106

Query:    95 YSKEGLPVIAVGVGLSTHD---KAS-VNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTS 150
               K G P+    +G++  +   KA+ +  YV  HI+  E    +  P+ S    +++ ++
Sbjct:   107 VDKTGRPIYIERLGMTDLNAFLKATTIERYVNYHIKEQEKTMSLRYPACSIASDKHVSST 166

Query:   151 LKVLDMTGLKLSALNQI--KLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLL 208
               +LD++G+ +S  ++    L   I  ID   YPE     ++VNA   F   W  +K  L
Sbjct:   167 TTILDVSGVGMSNFSKPARSLFMEIQKIDSNYYPETLHRLFVVNASSGFRMLWLALKTFL 226

Query:   209 QERTRRKMQVLQGNGRDELLKVRQLFQL-TFLSAH-SCN 245
               RT  K+QVL  N   ELL+  +   L TFL  + +C+
Sbjct:   227 DARTLAKVQVLGPNYLGELLEAIEPSNLPTFLGGNCTCS 265

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=ISS

TAIR|locus:2136303 SEC14 "SECRETION 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 69/232 (29%), Positives = 109/232 (46%)

Query:     5 EEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIE 64
             EE++      + L   L E   + H  +    ++RFL+AR +++ KA +M  D L WR E
Sbjct:    69 EELQAVDAFRQAL--ILDELLPSKHDDH--HMMLRFLRARKFDLEKAKQMWSDMLNWRKE 124

Query:    65 NDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYY 120
                D I+ +     E+   V+     G  G  KEG P+    +G     K     +++ Y
Sbjct:   125 YGADTIM-EDFDFKEIEEVVKYYPQ-GYHGVDKEGRPIYIERLGQVDATKLMKVTTIDRY 182

Query:   121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIK--LMTVITTIDD 178
             V+ H++  E    V  P+ S    R+I  S  +LD+ G+ LS  N+    L+  I  ID+
Sbjct:   183 VKYHVKEFEKTFNVKFPACSIAAKRHIDQSTTILDVQGVGLSNFNKAAKDLLQSIQKIDN 242

Query:   179 LNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKV 230
              NYPE     +I+NA   F   W  VK  L  +T  K+ VL    + +LL++
Sbjct:   243 DNYPETLNRMFIINAGCGFRLLWNTVKSFLDPKTTAKIHVLGNKYQTKLLEI 294

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=TAS

GO:0008526 "phosphatidylinositol transporter activity" evidence=IGI

TAIR|locus:2139564 COW1 "CAN OF WORMS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 4.5e-17, P = 4.5e-17
 Identities = 66/234 (28%), Positives = 108/234 (46%)

Query:    17 LDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPIL 76
             LD+ L     ++H       ++RFL+AR +++ KA +M  D ++WR +   D I+     
Sbjct:    75 LDELLPSKLDDLHM------MLRFLRARKFDIEKAKQMWSDMIQWRKDFGADTIIED--F 126

Query:    77 PAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRD 132
               E    V      G  G  KEG PV    +G    +K     +++ YV+ H++  E   
Sbjct:   127 DFEEIDEVMKHYPQGYHGVDKEGRPVYIERLGQIDANKLLQVTTMDRYVKYHVKEFEKTF 186

Query:   133 RVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQI--KLMTVITTIDDLNYPEKTETYYI 190
             +V  PS S    ++I  S  +LD+ G+ L   ++   +L+  +  ID+ NYPE     +I
Sbjct:   187 KVKFPSCSVAANKHIDQSTTILDVQGVGLKNFSKSARELLQRLCKIDNENYPETLNRMFI 246

Query:   191 VNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSC 244
             +NA   F   W  VK  L  +T  K+ VL      +LL+V    +L      +C
Sbjct:   247 INAGSGFRLLWSTVKSFLDPKTTAKIHVLGNKYHSKLLEVIDASELPEFFGGAC 300

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0008526 "phosphatidylinositol transporter activity" evidence=IGI

GO:0048768 "root hair cell tip growth" evidence=IMP

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0009932 "cell tip growth" evidence=IMP

GO:0010053 "root epidermal cell differentiation" evidence=IMP

UNIPROTKB|E2RM46 SEC14L4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 214 (80.4 bits), Expect = 5.4e-17, P = 5.4e-17
 Identities = 65/199 (32%), Positives = 107/199 (53%)

Query:    37 LVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYS 96
             L+R+L+AR++++ K+  ML   + +R + D+DNIL     P+E+ + + DS   G++GY 
Sbjct:    38 LLRWLRARNFDLQKSEDMLRKHMEFRKQQDLDNILTWQ--PSEVIQ-LYDSG--GLTGYD 92

Query:    97 KEGLPVIAVGVG-LSTHD---KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLK 152
              EG PV    +G L        AS    ++  I++ E   R      S+K G+ I T L 
Sbjct:    93 YEGCPVWFDIIGTLDPKGLLLSASKQELIRKRIRVCELLLREC-ELQSQKLGKKIETVLM 151

Query:   153 VLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQE 210
             V DM GL L  L +  +++      I + NYPE  +   ++ AP +F   + +VK  + E
Sbjct:   152 VFDMEGLSLKHLWKPAVEIYQQFFAILEANYPETLKNLIVIRAPKLFPVAFNLVKFFMSE 211

Query:   211 RTRRKMQVLQGNGRDELLK 229
              T+RK+ +L GN + ELL+
Sbjct:   212 ETQRKIVILGGNWKQELLR 230

GO:0016021 "integral to membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

TAIR|locus:2053114 AT2G18180 "AT2G18180" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 7.6e-17, P = 7.6e-17
 Identities = 70/248 (28%), Positives = 112/248 (45%)

Query:     5 EEIKQFQTLMEDL--DDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWR 62
             EE+K      + L  D+ L +   + H       ++RFLKAR +++ K ++M  D LRWR
Sbjct:    54 EELKVVDAFRQVLILDELLPDKHDDYHM------MLRFLKARKFDLEKTNQMWSDMLRWR 107

Query:    63 IENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVN 118
              E   D ++ +     E+   ++     G  G  KEG PV    +G     K     +++
Sbjct:   108 KEFGADTVM-EDFEFKEIDEVLKYYPQ-GHHGVDKEGRPVYIERLGQVDSTKLMQVTTMD 165

Query:   119 YYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIK--LMTVITTI 176
              YV  H+   E    V  P+ S    ++I  S  +LD+ G+ L   N+    L+T +  +
Sbjct:   166 RYVNYHVMEFERTFNVKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAARDLITRLQKV 225

Query:   177 DDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQL 236
             D  NYPE     +I+NA   F   W  VK  L  +T  K+ VL    + +LL++    +L
Sbjct:   226 DGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASEL 285

Query:   237 TFLSAHSC 244
                   SC
Sbjct:   286 PEFLGGSC 293

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00010940001 SubName- Full=Chromosome undetermined scaffold_296, whole genome shotgun sequence; (338 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
smart00516	158	smart00516, SEC14, Domain in homologues of a S	8e-21
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	2e-19
pfam00650	152	pfam00650, CRAL_TRIO, CRAL/TRIO domain	3e-12
pfam03765	48	pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma	1e-08
smart01100	48	smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom	4e-08

>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S

 Score = 85.4 bits (212), Expect = 8e-21
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 7/141 (4%)

Query: 89  LVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIG 148
           + G  GY K+G PV+    G       ++   ++  + + E   +       +K    I 
Sbjct: 9   IPGGRGYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQ------EEKKTGGIE 62

Query: 149 TSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLL 208
               + D+ GL +S    + ++  I  I   +YPE+    YI+N P+ F   WK++KP L
Sbjct: 63  GFTVIFDLKGLSMSNP-DLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFL 121

Query: 209 QERTRRKMQVLQGNGRDELLK 229
            E+TR K++ +  + ++ELL+
Sbjct: 122 DEKTREKIRFVGNDSKEELLE 142

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 81.7 bits (202), Expect = 2e-19
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 12/152 (7%)

Query: 81  YRAVRDSQLVGVSGY-SKEGLPVIAVGVGLSTHDKA-SVNYYVQSHIQMNEYRDRVVLPS 138
              +++   VG  G   KEG PV+ +  G     K+      ++  +   E   +     
Sbjct: 1   LEELKELGKVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQ 60

Query: 139 ASKKHGRYIGTSLKVLDMTGLKLS-ALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIF 197
                         ++D+ GL LS  L    L+  I  I   NYPE+ +  YI+N P+ F
Sbjct: 61  VEGFVV--------IIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFF 112

Query: 198 SACWKVVKPLLQERTRRKMQVLQGNGRDELLK 229
              WK+VKP L E+TR+K+  L G+ ++ELLK
Sbjct: 113 KVLWKIVKPFLSEKTRKKIVFL-GSDKEELLK 143

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 87  SQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRY 146
                + G  KEG PV+ +  G     K+S+   V+  + + E        +        
Sbjct: 1   GGKGYLHGRDKEGRPVLYLRPGRHDPKKSSLEELVRFLVLVLER-------ALLLLPEGQ 53

Query: 147 IGTSLKVLDMTGLKLSALNQIKLMTVITTIDDL--NYPEKTETYYIVNAPYIFSACWKVV 204
           I     ++DM GL LS +++  +  +   +  L  NYPE+     IVNAP+IF+  WK++
Sbjct: 54  IEGITVIIDMKGLSLSNMDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIWKLI 113

Query: 205 KPLLQERTRRKMQVLQGNGRDELLK 229
           KP L  +TR K+   + +  +ELLK
Sbjct: 114 KPFLDPKTREKIHFHKNSNLEELLK 138

Length = 152

>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 9/56 (16%)

Query: 4  QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTD-TLVRFLKARDWNVSKAHKMLVDC 58
          +E++++ +  +++L D LK+           D  L+RFL+AR ++V KA KML   
Sbjct: 1  EEKLEELREKLQELKDLLKD--------KLDDAFLLRFLRARKFDVEKAIKMLKKT 48

This all-alpha domain is found to the N-terminus of pfam00650. Length = 48

>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 4  QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58
          +E +++ + L+E   D L               L+RFL+AR ++V KA +ML   
Sbjct: 1  EEALEELRELLEKHPDLLPPRL-------DDAFLLRFLRARKFDVEKAKEMLEKY 48

Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
KOG1470	324	consensus Phosphatidylinositol transfer protein PD	100.0
KOG1471	317	consensus Phosphatidylinositol transfer protein SE	100.0
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	100.0
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.97
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.95
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	99.67
PF03765	55	CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr	99.01
KOG4406	467	consensus CDC42 Rho GTPase-activating protein [Sig	98.43
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	93.88
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	93.47
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	93.3
smart00546	43	CUE Domain that may be involved in binding ubiquit	86.33

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]

Probab=100.00  E-value=6.7e-43  Score=288.27  Aligned_cols=201  Identities=26%  Similarity=0.381  Sum_probs=175.0

Q ss_pred             CCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHHHHHHHhhhhcccccCCCCCCCcEEEEccCC
Q 025326           30 QGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGL  109 (254)
Q Consensus        30 ~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~~~~~l~~~~~~~~~g~D~~Grpv~~~~~~~  109 (254)
                      ..++|++++|||+|+||||++|.+++.+++.||+.+++...    +...++..++..+ .++..|+|++||||+|+++..
T Consensus        45 ~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~----~~~~Ev~~e~~tG-K~yi~G~D~~gRPVl~~~~~~  119 (324)
T KOG1470|consen   45 KWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEV----IEADEVAAELETG-KAYILGHDKDGRPVLYLRPRP  119 (324)
T ss_pred             hcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccc----cCHHHHHHHhhcC-cEEEecccCCCCeEEEEecCC
Confidence            34689999999999999999999999999999999987651    2345666666554 477889999999999998887


Q ss_pred             CCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCcccccchHHHHHHHHhhhhcCccccceEE
Q 025326          110 STHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYY  189 (254)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~  189 (254)
                      +.....+.+...+..++++|..+        ...+.+.+++++++|++|+|+++.+ ++..+.++.++|+||||||+..+
T Consensus       120 ~~qn~~t~~~~~r~~Vy~mE~Ai--------~~lp~~qe~~~~L~D~~~fs~sN~d-~~~~k~~~~~lq~hYPErLg~a~  190 (324)
T KOG1470|consen  120 HRQNTKTQKELERLLVYTLENAI--------LFLPPGQEQFVWLFDLTGFSMSNPD-IKFLKELLHILQDHYPERLGKAL  190 (324)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH--------HhCCCCcceEEEEEecccCcccCCC-cHHHHHHHHHHHHhChHHhhhhh
Confidence            76777788888999998887654        3344567889999999999999887 78999999999999999999999


Q ss_pred             EEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCcccccCCCccc
Q 025326          190 IVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCNR  246 (254)
Q Consensus       190 vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~  246 (254)
                      ++|+||+|..+|+++||||+|+|++||.|+.+  .+.+.++||+++||..+||+...
T Consensus       191 l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~--~~~l~~~~d~~~l~s~~GG~~~~  245 (324)
T KOG1470|consen  191 LVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP--KDDLSEYFDESQLPSLFGGKLLF  245 (324)
T ss_pred             hcCChHHHHHHHHHhhhccChhhhceeEEecC--hhHHHhhCCccccchhhCCCccc
Confidence            99999999999999999999999999999874  56699999999999999995543

>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]

Probab=100.00  E-value=4.1e-41  Score=287.93  Aligned_cols=214  Identities=34%  Similarity=0.484  Sum_probs=189.1

Q ss_pred             CCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHHHHHHHhhhhcccccCCCCCCCcEEEEccCC
Q 025326           30 QGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGL  109 (254)
Q Consensus        30 ~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~~~~~l~~~~~~~~~g~D~~Grpv~~~~~~~  109 (254)
                      ...+|..|+|||||++||+++|.+++..++.||+++++|.+..+ ...   ...+.+..+...+|.|++|+|+++.+.|.
T Consensus        41 ~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~-~~~---~~~~~~~~~~~~~~~~~~g~~v~~~~~g~  116 (317)
T KOG1471|consen   41 KYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED-FEE---DDELLKYYPQGLHGVDKEGRPVYIERLGK  116 (317)
T ss_pred             CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc-ccc---chhhhhhccccccccCCCCCEEEEeccCC
Confidence            35678899999999999999999999999999999999998865 211   12223356678899999999999999998


Q ss_pred             CCcc----chhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCccccc--chHHHHHHHHhhhhcCcc
Q 025326          110 STHD----KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALN--QIKLMTVITTIDDLNYPE  183 (254)
Q Consensus       110 ~~~~----~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~~~--~~~~~k~~~~~~~~~yP~  183 (254)
                      .+..    .....++.++++.-+|......++.+....+.+++|++.|+|++|++++++.  ..+.++.++.++|++||+
T Consensus       117 ~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe  196 (317)
T KOG1471|consen  117 IDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPE  196 (317)
T ss_pred             CCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHH
Confidence            7654    3577888999999999888777888877777889999999999999999985  356799999999999999


Q ss_pred             ccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCcccccCCCcccc
Q 025326          184 KTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCNRL  247 (254)
Q Consensus       184 rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~  247 (254)
                      +++++||||+|++|+++|+++||||+++|++||+++++++.++|.++|++++||.+|||++.+.
T Consensus       197 ~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG~~~~~  260 (317)
T KOG1471|consen  197 RLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGGTCGDL  260 (317)
T ss_pred             hhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCCCcccc
Confidence            9999999999999999999999999999999999767778999999999999999999999986

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=100.00  E-value=1.1e-33  Score=218.54  Aligned_cols=154  Identities=27%  Similarity=0.426  Sum_probs=125.4

Q ss_pred             HhhhhcccccCCCCCCCcEEEEccCCCCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCccc
Q 025326           84 VRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSA  163 (254)
Q Consensus        84 l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~  163 (254)
                      +.++++.+++|+|++||||++++++.+++...+.++++++.++++|..++.. +.     +.+.+|+++|+|++|+++++
T Consensus         3 ~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~-~~-----~~~~~~~~~iiD~~g~~~~~   76 (159)
T PF00650_consen    3 ILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRM-PE-----GGQVEGIVVIIDLSGFSLSN   76 (159)
T ss_dssp             HHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTH-HH-----TSHHH-EEEEEE-TT--HHH
T ss_pred             HHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhh-cc-----cccceeEEEEEeCCCceEec
Confidence            4567788999999999999999999998887788899999999999876421 11     35678999999999999998


Q ss_pred             ccc--hHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCH-hHHhhhCCCCCccccc
Q 025326          164 LNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGR-DELLKVRQLFQLTFLS  240 (254)
Q Consensus       164 ~~~--~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~-~~L~~~i~~~~LP~~~  240 (254)
                      ++.  .+.++.+++++|++||+|++++|++|+|++++.+|+++++|++++|++||+++++.+. ++|.+++|+++||++|
T Consensus        77 ~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP~~~  156 (159)
T PF00650_consen   77 FDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLPVEY  156 (159)
T ss_dssp             HHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSBGGG
T ss_pred             cccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCchhc
Confidence            863  5789999999999999999999999999999999999999999999999999965433 7999999999999999


Q ss_pred             CCC
Q 025326          241 AHS  243 (254)
Q Consensus       241 GG~  243 (254)
                      ||+
T Consensus       157 GG~  159 (159)
T PF00650_consen  157 GGT  159 (159)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            997

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>smart00516 SEC14 Domain in homologues of a S

Probab=99.97  E-value=4.5e-31  Score=203.66  Aligned_cols=150  Identities=25%  Similarity=0.408  Sum_probs=134.7

Q ss_pred             hcccccCCCCCCCcEEEEccCCCCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCcccccch
Q 025326           88 QLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQI  167 (254)
Q Consensus        88 ~~~~~~g~D~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~~~~~  167 (254)
                      .+.++ |.|++||||++++++.++++..+.+++++++++.+|...+.      .....+..|+++|+|++|+++++++ .
T Consensus         9 ~~~~~-g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~~~i~D~~~~~~~~~~-~   80 (158)
T smart00516        9 IPGGR-GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQR------EKKTGGIEGFTVIFDLKGLSMSNPD-L   80 (158)
T ss_pred             cCCCC-CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHH------HhcCCCeeeEEEEEECCCCCccccc-H
Confidence            34444 89999999999999998888889999999999999976541      2245577899999999999999965 6


Q ss_pred             HHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCcccccCCCcc
Q 025326          168 KLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCN  245 (254)
Q Consensus       168 ~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP~~~GG~~~  245 (254)
                      +.++.++++++.+||++++++||+|+|++++.+|+++++|+++++++||+++++++.+.|.+++|+++||.+|||++.
T Consensus        81 ~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP~~~GG~~~  158 (158)
T smart00516       81 SVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLPEELGGTLD  158 (158)
T ss_pred             HHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCcHhhCCCCC
Confidence            889999999999999999999999999999999999999999999999999987678999999999999999999974

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.95  E-value=1.9e-27  Score=182.47  Aligned_cols=145  Identities=30%  Similarity=0.443  Sum_probs=123.9

Q ss_pred             ccccCCCCCCCcEEEEccCCCCccc-hhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCccccc-ch
Q 025326           90 VGVSGYSKEGLPVIAVGVGLSTHDK-ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALN-QI  167 (254)
Q Consensus        90 ~~~~g~D~~Grpv~~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~~~-~~  167 (254)
                      .+.+|.|++||||++++++..++.. .+.++++++.++.+|...+.        .....+|+++|+|++|++++++. ..
T Consensus        11 ~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--------~~~~~~~~~~i~D~~~~~~~~~~~~~   82 (157)
T cd00170          11 GYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQE--------DDEQVEGFVVIIDLKGLSLSHLLPDP   82 (157)
T ss_pred             cccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhh--------hhhcccceEEEEECCCCChhccchhH
Confidence            4455679999999999999644443 34478888989888875431        11223699999999999999884 46


Q ss_pred             HHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCcccccCCC
Q 025326          168 KLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSAHS  243 (254)
Q Consensus       168 ~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP~~~GG~  243 (254)
                      +.++.++.+++++||++++++|++|+|++++.+|+++++|+++++++||++++++ .++|.+++|+++||.+|||+
T Consensus        83 ~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~  157 (157)
T cd00170          83 SLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT  157 (157)
T ss_pred             HHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence            7899999999999999999999999999999999999999999999999998854 89999999999999999996

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=99.67  E-value=5.6e-17  Score=123.82  Aligned_cols=141  Identities=15%  Similarity=0.163  Sum_probs=95.2

Q ss_pred             ccccCCCCCCCcEEEEccCCCCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCcccccchHH
Q 025326           90 VGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKL  169 (254)
Q Consensus        90 ~~~~g~D~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~~~~~~~  169 (254)
                      .+..|+|++||||+++..... +...+.+.++.+.+..++       +.      -...++++|+|++|.+..+.+....
T Consensus         4 ~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~-------~~------~~~~~f~vVid~~~~~~~~~~~~~~   69 (149)
T PF13716_consen    4 FYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLS-------EE------VVDKPFSVVIDHTGFSRSSEPSLSW   69 (149)
T ss_dssp             -EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH--------TT------TTTS-EEEEEE-TT--GGG---HHH
T ss_pred             EEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhh-------HH------hcCCCEEEEEEcCCCccccCCchHH
Confidence            356799999999999997766 444455555555543321       11      1234699999999999877666788


Q ss_pred             HHHHHHhhhhcCccccceEEEEcCCcchHHHH-HHhcccCChhh-hcceEEecCCCHhHHhhhCCCCCcccccCCCccc
Q 025326          170 MTVITTIDDLNYPEKTETYYIVNAPYIFSACW-KVVKPLLQERT-RRKMQVLQGNGRDELLKVRQLFQLTFLSAHSCNR  246 (254)
Q Consensus       170 ~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~-~~vk~~l~~~t-~~Ki~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~  246 (254)
                      ++.+...+...|+..++++||+|++++++..+ .+.+++.+.+. ..||..+.+  .++|.++||+++||.++||+.+-
T Consensus        70 l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~~~~~  146 (149)
T PF13716_consen   70 LKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPGVLQY  146 (149)
T ss_dssp             HHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------HHH--
T ss_pred             HHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCCEEec
Confidence            99999999999999999999999999999999 66677888888 999998874  89999999999999999987653

>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.01  E-value=8.5e-10  Score=69.21  Aligned_cols=54  Identities=30%  Similarity=0.564  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHh-hhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326            4 QEEIKQFQTLMEDLDDSLKETF-KNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus         4 ~~~~~~lr~~~~~~~~~l~~~~-~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      ++++++|++.+++..... ..+ ...+...+|.+|+|||||++|||++|.++|.++
T Consensus         1 k~~l~~l~~~l~~~~~~~-~~~~~~~~~~~~d~~llRFLRARkf~v~~A~~mL~~t   55 (55)
T PF03765_consen    1 KQKLKQLREHLSELDEKA-PGLWDDEKEDHDDNFLLRFLRARKFDVEKAFKMLKKT   55 (55)
T ss_dssp             HHHHHHHHHHHHH--GGG-THHHTTHTSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccch-hcccccccCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence            578899999888763222 111 234567789999999999999999999999875

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....

>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]

Probab=98.43  E-value=1.3e-06  Score=74.79  Aligned_cols=126  Identities=17%  Similarity=0.211  Sum_probs=93.7

Q ss_pred             CCCCCCcEEEEccCCCCcc-chhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCcccccchHHHHHH
Q 025326           95 YSKEGLPVIAVGVGLSTHD-KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVI  173 (254)
Q Consensus        95 ~D~~Grpv~~~~~~~~~~~-~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~~~~~~~~k~~  173 (254)
                      .|++||+++++-..++-.. +.+--.++.+.++..++..+              +-.+.+.=-.|+...+.+.+.++...
T Consensus        89 ~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve--------------~DYt~vYfh~gl~s~nkp~l~~l~~a  154 (467)
T KOG4406|consen   89 KDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVE--------------NDYTLVYFHHGLPSDNKPYLQLLFDA  154 (467)
T ss_pred             ccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHh--------------ccceeeehhcCCcccccchHHHHHHH
Confidence            5999999999888775332 22222367777766665321              12566666677777777666666555


Q ss_pred             HHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCc
Q 025326          174 TTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQL  236 (254)
Q Consensus       174 ~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~L  236 (254)
                      ..-+..+|---++.+|||.+.|+.+++|+++||+++.+..+||+-++  ..++|.+++.-+.|
T Consensus       155 Yke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n--~lseL~~~l~l~rL  215 (467)
T KOG4406|consen  155 YKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN--SLSELFEALKLNRL  215 (467)
T ss_pred             HHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee--hHHHHHHhhhhhhh
Confidence            55556678889999999999999999999999999999999999877  48999988765443

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=93.88  E-value=0.26  Score=28.72  Aligned_cols=24  Identities=21%  Similarity=0.566  Sum_probs=20.3

Q ss_pred             CChHHHHHHHhhcCCCHHHHHHHH
Q 025326           32 NPTDTLVRFLKARDWNVSKAHKML   55 (254)
Q Consensus        32 ~~d~~llRfL~a~~~dv~ka~~~l   55 (254)
                      .++.....||..++||++.|+..+
T Consensus        13 ~~~~~A~~~L~~~~wdle~Av~~y   36 (43)
T PF14555_consen   13 ADEDVAIQYLEANNWDLEAAVNAY   36 (43)
T ss_dssp             SSHHHHHHHHHHTTT-HHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCCHHHHHHHH
Confidence            467789999999999999998876

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=93.47  E-value=0.34  Score=27.15  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKML   55 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l   55 (254)
                      +++.....+-|+.+++|+++|..-|
T Consensus        13 Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen   13 GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            4777788999999999999998754

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=93.30  E-value=0.31  Score=28.18  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=23.3

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKMLVD   57 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l~~   57 (254)
                      +++...+..-|.++++|++.|+..|..
T Consensus        14 ~~~~~~I~~~L~~~~~~ve~ai~~LL~   40 (42)
T PF02845_consen   14 DLDREVIEAVLQANNGDVEAAIDALLE   40 (42)
T ss_dssp             SS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            578889999999999999999998854

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=86.33  E-value=2.5  Score=24.40  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=23.3

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKMLV   56 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l~   56 (254)
                      +.++..+.+.|+++++|++.|...|.
T Consensus        15 ~l~~~~I~~~L~~~~g~ve~~i~~LL   40 (43)
T smart00546       15 NLDEEVIKAVLEANNGNVEATINNLL   40 (43)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            57888999999999999999998875

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
3q8g_A	320	Resurrection Of A Functional Phosphatidylinositol T		2e-16
1aua_A	296	Phosphatidylinositol Transfer Protein Sec14p From S		2e-16
3b74_A	320	Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co		4e-16
1olm_A	403	Supernatant Protein Factor In Complex With Rrr-Alph		8e-14
1olm_E	403	Supernatant Protein Factor In Complex With Rrr-Alph		8e-14
1o6u_A	403	The Crystal Structure Of Human Supernatant Protein		1e-12
1oip_A	278	The Molecular Basis Of Vitamin E Retention: Structu		8e-05
1r5l_A	262	Crystal Structure Of Human Alpha-tocopherol Transfe		2e-04

>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 38/246 (15%)
Query: 3   HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWR 62
            +E + QF++++  L+ + KE   +        TL+RFL+AR ++++ + +M V+  RWR
Sbjct: 39  QEEALLQFRSIL--LEKNYKERLDD-------STLLRFLRARKFDINASVEMFVETERWR 89
Query: 63  IENDIDNILAKPILPAELYRAVRDSQLVGVSGY--------SKEGLPVIAV---GVGLS- 110
            E   + I+       E  +   D + + ++           K+G P+      G+ L  
Sbjct: 90  EEYGANTIIED----YENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKK 145
Query: 111 ----THDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ 166
               T +K  +   V+ +     YR    +P+ S++ G  I TS  VLD+ G+ LS  N 
Sbjct: 146 MYKITTEKQMLRNLVKEYELFATYR----VPACSRRAGYLIETSCTVLDLKGISLS--NA 199
Query: 167 IKLMTVITTIDDLN---YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNG 223
             +++ I  + D++   YPE+   +YI+++P+ FS  +K+VKP L   T  K+ +L  + 
Sbjct: 200 YHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSY 259
Query: 224 RDELLK 229
           + ELLK
Sbjct: 260 KKELLK 265

>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 40/245 (16%)
Query: 2   AHQEEIKQFQTLMED------LDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKML 55
           A ++ + + + L+ED      LDDS               TL+RFL+AR ++V  A +M 
Sbjct: 29  AQEKALAELRKLLEDAGFIERLDDS---------------TLLRFLRARKFDVQLAKEMF 73
Query: 56  VDCLRWRIENDIDNIL------AKPIL----PAELYRAVRDSQLVGVSGYSKEGLPVIAV 105
            +C +WR +   D IL       KP++    P   ++  +D + V    Y +E   V   
Sbjct: 74  ENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPV----YFEELGAVNLH 129
Query: 106 GVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLS-AL 164
            +   T ++  +   V  +  + +YR    LP+ S+  G  + TS  ++D+ G+ +S A 
Sbjct: 130 EMNKVTSEERMLKNLVWEYESVVQYR----LPACSRAAGHLVETSCTIMDLKGISISSAY 185
Query: 165 NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGR 224
           + +  +   + I    YPE+   +YI+NAP+ FS  +++ KP L   T  K+ +L  + +
Sbjct: 186 SVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQ 245
Query: 225 DELLK 229
            ELLK
Sbjct: 246 KELLK 250

>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 38/246 (15%)
Query: 3   HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWR 62
            +E + QF++++  L+ + KE   +        TL+RFL+AR ++++ + +M V+  RWR
Sbjct: 39  QEEALLQFRSIL--LEKNYKERLDD-------STLLRFLRARKFDINASVEMFVETERWR 89
Query: 63  IENDIDNILAKPILPAELYRAVRDSQLVGVSGY--------SKEGLPVIAV---GVGLS- 110
            E   + I+       E  +   D + + ++           K+G P+      G+ L  
Sbjct: 90  EEYGANTIIED----YENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKK 145
Query: 111 ----THDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ 166
               T +K  +   V+ +     YR    +P+ S++ G  I TS  VLD+ G+ LS  N 
Sbjct: 146 MYKITTEKQMLRNLVKEYELFATYR----VPACSRRAGYLIETSCTVLDLKGISLS--NA 199
Query: 167 IKLMTVITTIDDLN---YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNG 223
             +++ I  + D++   YPE+   +YI+++P+ FS  +K+VKP L   T  K+ +L  + 
Sbjct: 200 YHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSY 259
Query: 224 RDELLK 229
           + ELLK
Sbjct: 260 KKELLK 265

>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 11/204 (5%)
Query: 32  NPTDT-LVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLV 90
           NP D  L+R+L+AR +++ K+  ML   + +R + DIDNI++    P E+ +        
Sbjct: 32  NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS--WQPPEVIQQYLSG--- 86
Query: 91  GVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSAS---KKHGRYI 147
           G+ GY  +G PV    +G         +   Q  ++       ++L   +    K GR +
Sbjct: 87  GMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKV 146
Query: 148 GTSLKVLDMTGLKLSAL--NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 205
            T   + D  GL L  L    ++       + + NYPE  +  ++V AP +F   + ++K
Sbjct: 147 ETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIK 206
Query: 206 PLLQERTRRKMQVLQGNGRDELLK 229
           P L E TR+K+ VL  N ++ LLK
Sbjct: 207 PFLSEDTRKKIMVLGANWKEVLLK 230

>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 11/204 (5%)
Query: 32  NPTDT-LVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLV 90
           NP D  L+R+L+AR +++ K+  ML   + +R + DIDNI++    P E+ +        
Sbjct: 32  NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS--WQPPEVIQQYLSG--- 86
Query: 91  GVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSAS---KKHGRYI 147
           G+ GY  +G PV    +G         +   Q  ++       ++L   +    K GR +
Sbjct: 87  GMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKV 146
Query: 148 GTSLKVLDMTGLKLSAL--NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 205
            T   + D  GL L  L    ++       + + NYPE  +  ++V AP +F   + ++K
Sbjct: 147 ETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIK 206
Query: 206 PLLQERTRRKMQVLQGNGRDELLK 229
           P L E TR+K+ VL  N ++ LLK
Sbjct: 207 PFLSEDTRKKIMVLGANWKEVLLK 230

>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 32  NPTDT-LVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLV 90
           NP D  L+R+L+AR +++ K+   L   + +R + DIDNI++    P E+ +        
Sbjct: 32  NPDDYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIIS--WQPPEVIQQYLSG--- 86
Query: 91  GVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASK---KHGRYI 147
           G  GY  +G PV    +G         +   Q  ++       ++L   +    K GR +
Sbjct: 87  GXCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECELLLQECAHQTTKLGRKV 146
Query: 148 GTSLKVLDMTGLKLSAL--NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 205
            T   + D  GL L  L    ++         + NYPE  +  ++V AP +F   + ++K
Sbjct: 147 ETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIK 206
Query: 206 PLLQERTRRKMQVLQGNGRDELLK 229
           P L E TR+K+ VL  N ++ LLK
Sbjct: 207 PFLSEDTRKKIXVLGANWKEVLLK 230

>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 95/206 (46%), Gaps = 28/206 (13%)
Query: 34  TDT-LVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELY-RAVRDSQLVG 91
           TD+ L+RFL+ARD+++  A ++L +  +WR E         P + A+L+ R++      G
Sbjct: 48  TDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC--------PEISADLHPRSIIGLLKAG 99
Query: 92  VSGYSKEGLPVIA--VGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGT 149
             G  +   P  +  +   ++  D      Y    + +    + +V    ++++G     
Sbjct: 100 YHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLIT-SELIVQEVETQRNGIK--- 155
Query: 150 SLKVLDMTGLKLSALNQI------KLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKV 203
              + D+ G + S   QI      K+  V+T     ++P K    +++N P IF A + +
Sbjct: 156 --AIFDLEGWQFSHAFQITPSVAKKIAAVLTD----SFPLKVRGIHLINEPVIFHAVFSM 209
Query: 204 VKPLLQERTRRKMQVLQGNGRDELLK 229
           +KP L E+ + ++ +   N +  LL+
Sbjct: 210 IKPFLTEKIKERIHMHGNNYKQSLLQ 235

>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 28/206 (13%)
Query: 34  TDT-LVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELY-RAVRDSQLVG 91
           TD+ L+RFL+ARD+++  A ++L +  +WR E         P + A+L+ R++      G
Sbjct: 32  TDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC--------PEISADLHPRSIIGLLKAG 83
Query: 92  VSGYSKEGLPVIA--VGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGT 149
             G  +   P  +  +   ++  D      Y    + +    + +V    ++++G     
Sbjct: 84  YHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLIT-SELIVQEVETQRNGIK--- 139
Query: 150 SLKVLDMTGLKLSALNQI------KLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKV 203
              + D+ G + S   QI      K+  V+T     ++P K    +++N P IF A +  
Sbjct: 140 --AIFDLEGWQFSHAFQITPSVAKKIAAVLTD----SFPLKVRGIHLINEPVIFHAVFSX 193
Query: 204 VKPLLQERTRRKMQVLQGNGRDELLK 229
           +KP L E+ + ++     N +  LL+
Sbjct: 194 IKPFLTEKIKERIHXHGNNYKQSLLQ 219

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	1e-63
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	3e-62
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	6e-51
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	1e-32
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	2e-29

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320

 Score =  200 bits (511), Expect = 1e-63
 Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 18/236 (7%)

Query: 4   QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRI 63
           +E + QF++++ +         KN  +     TL+RFL+AR ++++ + +M V+  RWR 
Sbjct: 40  EEALLQFRSILLE---------KNYKERLDDSTLLRFLRARKFDINASVEMFVETERWRE 90

Query: 64  ENDIDNILAKPILPAELYRAVRDSQL----VGVSGYSKEGLPVIAVGVGLST----HDKA 115
           E   + I+       E     R               K+G P+    +G       +   
Sbjct: 91  EYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKIT 150

Query: 116 SVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIK-LMTVIT 174
           +    +++ ++  E      +P+ S++ G  I TS  VLD+ G+ LS    +   +  + 
Sbjct: 151 TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVA 210

Query: 175 TIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKV 230
            I    YPE+   +YI+++P+ FS  +K+VKP L   T  K+ +L  + + ELLK 
Sbjct: 211 DISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQ 266

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296

 Score =  196 bits (500), Expect = 3e-62
 Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 18/235 (7%)

Query: 2   AHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTD-TLVRFLKARDWNVSKAHKMLVDCLR 60
           A ++ + + + L+ED                  D TL+RFL+AR ++V  A +M  +C +
Sbjct: 29  AQEKALAELRKLLEDAG----------FIERLDDSTLLRFLRARKFDVQLAKEMFENCEK 78

Query: 61  WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGL----STHDKAS 116
           WR +   D IL            +            K+G PV    +G       +   S
Sbjct: 79  WRKDYGTDTILQDFHYDE--KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTS 136

Query: 117 VNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ-IKLMTVITT 175
               +++ +   E   +  LP+ S+  G  + TS  ++D+ G+ +S+    +  +   + 
Sbjct: 137 EERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASY 196

Query: 176 IDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKV 230
           I    YPE+   +YI+NAP+ FS  +++ KP L   T  K+ +L  + + ELLK 
Sbjct: 197 ISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQ 251

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403

 Score =  170 bits (431), Expect = 6e-51
 Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 20/233 (8%)

Query: 4   QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRI 63
           +E + +F+  ++D+  +L               L+R+L+AR +++ K+  ML   + +R 
Sbjct: 13  KEALAKFRENVQDVLPALPNP--------DDYFLLRWLRARSFDLQKSEAMLRKHVEFRK 64

Query: 64  ENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLST----HDKASVNY 119
           + DIDNI+       +    ++     G+ GY  +G PV    +G          AS   
Sbjct: 65  QKDIDNII-----SWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQD 119

Query: 120 YVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTID 177
            +++ ++  E   +      + K GR + T   + D  GL L  L +  ++       + 
Sbjct: 120 LLRTKMRECELLLQECAH-QTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMF 178

Query: 178 DLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKV 230
           + NYPE  +  ++V AP +F   + ++KP L E TR+K+ VL  N ++ LLK 
Sbjct: 179 EENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKH 231

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score =  119 bits (301), Expect = 1e-32
 Identities = 34/232 (14%), Positives = 93/232 (40%), Gaps = 17/232 (7%)

Query: 3   HQEEIKQFQTLMEDLDDSLKETFKNVHQGNP-TD--TLVRFLKARDWNVSKAHKMLVDCL 59
            +E +++ Q +++    S +E    V +     D    +RF++AR +NV +A+++L   +
Sbjct: 58  REEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYV 117

Query: 60  RWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNY 119
            +R++     +    + P  +   +       +S   K G  V+   +      + + + 
Sbjct: 118 NFRLQYP--ELFDS-LSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDE 174

Query: 120 YVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTV--ITTID 177
            +Q++  + E           +     I     + +  G  +     ++   +  +  + 
Sbjct: 175 ILQAYCFILEK--------LLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDML 226

Query: 178 DLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLK 229
             ++P   +  + ++ P+ F+  + VVKP L+ +   ++ V  G+      +
Sbjct: 227 QDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVH-GDDLSGFYQ 277

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score =  110 bits (277), Expect = 2e-29
 Identities = 40/231 (17%), Positives = 84/231 (36%), Gaps = 23/231 (9%)

Query: 4   QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTD--TLVRFLKARDWNVSKAHKMLVDCLRW 61
           Q  +   +    +                P     L+RFL+ARD+++  A ++L +  +W
Sbjct: 9   QPGLAALRRRAREA--------GVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKW 60

Query: 62  RIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYV 121
           R E     I A  + P  +   ++      +      G  V+   +        +     
Sbjct: 61  RAECP--EISAD-LHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVF 117

Query: 122 QSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTV--ITTIDDL 179
           +  +  +E           ++          + D+ G + S   QI       I  +   
Sbjct: 118 RVSLITSEL--------IVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTD 169

Query: 180 NYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKV 230
           ++P K    +++N P IF A + ++KP L E+ + ++ +   N +  LL+ 
Sbjct: 170 SFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQH 220

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	100.0
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	100.0
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	100.0
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	100.0
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	100.0
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	99.37
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	99.18
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	93.4
3e21_A	45	HFAF1, FAS-associated factor 1; UBA, alternative s	91.93
2di0_A	71	Activating signal cointegrator 1 complex subunit 2	89.56
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	88.52
2dhy_A	67	CUE domain-containing protein 1; structural genomi	88.49
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	88.25
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	87.77
1ufz_A	83	Hypothetical protein BAB28515; HBS1-like domain, s	86.87
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	85.04
2dna_A	67	Unnamed protein product; ubiquitin associated doma	85.02
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	84.31
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	82.93
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	82.53
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	81.48
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	81.43
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	80.63
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	80.25

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=100.00  E-value=4.7e-50  Score=338.85  Aligned_cols=235  Identities=25%  Similarity=0.384  Sum_probs=202.5

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHHHHH
Q 025326            3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYR   82 (254)
Q Consensus         3 ~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~~~~   82 (254)
                      .++++++||+++++.+         .+...||.+|+|||||++||+++|.++|.++++||+++++++++.+ ..+.+ ..
T Consensus        30 q~~~l~~lr~~l~~~~---------~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~~~~-~~   98 (296)
T 1aua_A           30 QEKALAELRKLLEDAG---------FIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQD-FHYDE-KP   98 (296)
T ss_dssp             HHHHHHHHHHHHHHTT---------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHH-CCCTT-HH
T ss_pred             HHHHHHHHHHHHHhcC---------CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhc-cccCc-HH
Confidence            3567888888887654         2456889999999999999999999999999999999999988754 22221 23


Q ss_pred             HHhhhhcccccCCCCCCCcEEEEccCCCCccc----hhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCC
Q 025326           83 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTG  158 (254)
Q Consensus        83 ~l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g  158 (254)
                      .+.+..+.+++|+|++||||++++++.++++.    .+.+++++++++.+|...+..++.++...+.+++++++|+|++|
T Consensus        99 ~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g  178 (296)
T 1aua_A           99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG  178 (296)
T ss_dssp             HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred             HHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCC
Confidence            45566667789999999999999999987754    46788999999999987765555566666777899999999999


Q ss_pred             CCcccccc-hHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCcc
Q 025326          159 LKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLT  237 (254)
Q Consensus       159 ~~~~~~~~-~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP  237 (254)
                      +++++++. .+.++.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+++++++.++|.++||+++||
T Consensus       179 ~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP  258 (296)
T 1aua_A          179 ISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLP  258 (296)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSB
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCc
Confidence            99999875 46789999999999999999999999999999999999999999999999999876788999999999999


Q ss_pred             cccCCCccccc
Q 025326          238 FLSAHSCNRLT  248 (254)
Q Consensus       238 ~~~GG~~~~~~  248 (254)
                      ++|||++++..
T Consensus       259 ~~yGG~~~~~~  269 (296)
T 1aua_A          259 VKFGGKSEVDE  269 (296)
T ss_dssp             GGGTSCBCCCG
T ss_pred             HHhCCCCCCCC
Confidence            99999998876

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=100.00  E-value=2.5e-50  Score=342.74  Aligned_cols=236  Identities=25%  Similarity=0.380  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHH----
Q 025326            4 QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAE----   79 (254)
Q Consensus         4 ~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~----   79 (254)
                      ++++++||+++++.+         .+...||.+|+|||||++||+++|.++|+++++||+++++|+++.+...+.+    
T Consensus        40 ~~~l~~lR~~l~~~~---------~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~  110 (320)
T 3q8g_A           40 EEALLQFRSILLEKN---------YKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDK  110 (320)
T ss_dssp             HHHHHHHHHHHHHTT---------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHhcC---------CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchh
Confidence            467888888888664         2346889999999999999999999999999999999999988753111111    


Q ss_pred             HHHHHhhhhcccccCCCCCCCcEEEEccCCCCccc----hhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEe
Q 025326           80 LYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLD  155 (254)
Q Consensus        80 ~~~~l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD  155 (254)
                      -...+.+.++.+++|+|++||||+|+++|.++++.    .+.+++++++++.+|...+..++.++...+..++++++|+|
T Consensus       111 e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD  190 (320)
T 3q8g_A          111 ERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLD  190 (320)
T ss_dssp             HHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred             HHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEE
Confidence            12345667778889999999999999999988764    36678899999999987765555566666777899999999


Q ss_pred             CCCCCcccccc-hHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCC
Q 025326          156 MTGLKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLF  234 (254)
Q Consensus       156 ~~g~~~~~~~~-~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~  234 (254)
                      ++|+++++++. ++.++.++.++|++||+|++++||||+|++|+.+|+++||||+++|++||+++++++.++|.++||++
T Consensus       191 ~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~  270 (320)
T 3q8g_A          191 LKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIE  270 (320)
T ss_dssp             CTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChh
Confidence            99999999864 46789999999999999999999999999999999999999999999999998865578999999999


Q ss_pred             CcccccCCCccccc
Q 025326          235 QLTFLSAHSCNRLT  248 (254)
Q Consensus       235 ~LP~~~GG~~~~~~  248 (254)
                      +||++|||+++|..
T Consensus       271 ~LP~~yGG~~~~~~  284 (320)
T 3q8g_A          271 NLPVKYGGTSVLHN  284 (320)
T ss_dssp             GSBGGGTSCBCCSS
T ss_pred             hCChhhCCCCCCCC
Confidence            99999999999843

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=100.00  E-value=2.3e-48  Score=330.54  Aligned_cols=231  Identities=14%  Similarity=0.214  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHhhhH---HHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHHH
Q 025326            4 QEEIKQFQTLMEDLDD---SLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAEL   80 (254)
Q Consensus         4 ~~~~~~lr~~~~~~~~---~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~~   80 (254)
                      ++++++||+|++++++   .+..+++......||.+|+|||||++||+++|.++|.++++||++++  +++ +++++.++
T Consensus        59 ~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~--~~~-~~~~~~~i  135 (316)
T 3hx3_A           59 EEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP--ELF-DSLSPEAV  135 (316)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG--GGT-TTCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc--hhh-cCCCHHHH
Confidence            3456666666665543   12111000113579999999999999999999999999999999996  333 33556677


Q ss_pred             HHHHhhhhcccccCCCCCCCcEEEEccCCCCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCC
Q 025326           81 YRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLK  160 (254)
Q Consensus        81 ~~~l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~  160 (254)
                      .+.++.+.+.+++|+|++||||++++++.++++..+.+++++++++++|....        ..+.+++|+++|+|++|++
T Consensus       136 ~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~--------~~~~~v~g~v~IiD~~g~s  207 (316)
T 3hx3_A          136 RCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLE--------NEETQINGFCIIENFKGFT  207 (316)
T ss_dssp             HHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTT--------SHHHHHHCEEEEEECTTCC
T ss_pred             HHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHh--------cccCCcceEEEEEECCCCC
Confidence            66777777788899999999999999999999888889999999999887542        1223568999999999999


Q ss_pred             ccccc--chHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCccc
Q 025326          161 LSALN--QIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTF  238 (254)
Q Consensus       161 ~~~~~--~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP~  238 (254)
                      ++++.  ..+.++.++.++|++||+|++++||||+|++|+.+|+++||||+++|++||+++++ +.++|.++||+++||+
T Consensus       208 l~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~-~~~~L~~~I~~~~LP~  286 (316)
T 3hx3_A          208 MQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD-DLSGFYQEIDENILPS  286 (316)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET-CCHHHHHHSCGGGSBG
T ss_pred             HHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC-CHHHHHhhCCHhhCcH
Confidence            99874  24679999999999999999999999999999999999999999999999999764 4689999999999999


Q ss_pred             ccCCCccc
Q 025326          239 LSAHSCNR  246 (254)
Q Consensus       239 ~~GG~~~~  246 (254)
                      +|||++++
T Consensus       287 eyGG~~~~  294 (316)
T 3hx3_A          287 DFGGTLPK  294 (316)
T ss_dssp             GGTSSBCC
T ss_pred             hhCCCCCC
Confidence            99999985

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=100.00  E-value=3.7e-48  Score=321.89  Aligned_cols=227  Identities=17%  Similarity=0.226  Sum_probs=192.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHHHHHH
Q 025326            4 QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRA   83 (254)
Q Consensus         4 ~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~~~~~   83 (254)
                      ++++++||+++++...      ...+...+|.+|+|||||++||+++|.++|.++++||++++  ++. .++++.++.+.
T Consensus         9 ~~~l~~lr~~l~~~~~------~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~--~i~-~~~~~~~~~~~   79 (262)
T 1r5l_A            9 QPGLAALRRRAREAGV------PLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP--EIS-ADLHPRSIIGL   79 (262)
T ss_dssp             CTTHHHHHHHHHHHTC------CCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH--HHH-SCCCGGGTHHH
T ss_pred             HHHHHHHHHHHHhCCc------ccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh--Hhh-hcCChHHHHHH
Confidence            4578888888876542      01245689999999999999999999999999999999985  333 23456666666


Q ss_pred             HhhhhcccccCCCCCCCcEEEEccCCCCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCccc
Q 025326           84 VRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSA  163 (254)
Q Consensus        84 l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~  163 (254)
                      +..+...+++|+|++||||++++++.++++..+..+++++.++++|....   +     .+.++.|+++|+|++|+++++
T Consensus        80 ~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~---~-----~~~~~~g~~~I~D~~g~s~~~  151 (262)
T 1r5l_A           80 LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQ---E-----VETQRNGIKAIFDLEGWQFSH  151 (262)
T ss_dssp             HHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTT---S-----HHHHHHCEEEEEECTTCCHHH
T ss_pred             HHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHh---C-----hhhcccceEEEEECCCCCHHH
Confidence            77777778899999999999999999998877888899999998887432   1     112357899999999999999


Q ss_pred             ccc--hHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCcccccC
Q 025326          164 LNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTFLSA  241 (254)
Q Consensus       164 ~~~--~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP~~~G  241 (254)
                      ++.  .+.++.++.++|++||+|++++||||+|++|+.+|+++||||+++|++||++++++..++|.++|| ++||++||
T Consensus       152 ~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yG  230 (262)
T 1r5l_A          152 AFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYG  230 (262)
T ss_dssp             HHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGT
T ss_pred             HhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhC
Confidence            753  578999999999999999999999999999999999999999999999999987666799999999 99999999


Q ss_pred             CCccccc
Q 025326          242 HSCNRLT  248 (254)
Q Consensus       242 G~~~~~~  248 (254)
                      |+++...
T Consensus       231 G~~~~~~  237 (262)
T 1r5l_A          231 GEEFSME  237 (262)
T ss_dssp             CSSCCHH
T ss_pred             CCCCCHH
Confidence            9997644

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=100.00  E-value=4.2e-47  Score=333.56  Aligned_cols=232  Identities=26%  Similarity=0.390  Sum_probs=195.7

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhccCCCCCHHHHH
Q 025326            3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYR   82 (254)
Q Consensus         3 ~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~~~~~~~~~~~   82 (254)
                      .++++++||+++++....       ++ ..+|.+|+|||||++||+++|.++|+++++||+++++|+++. ...+ +.  
T Consensus        12 q~~~l~~lr~~l~~~~~~-------l~-~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~-~~--   79 (403)
T 1olm_A           12 QKEALAKFRENVQDVLPA-------LP-NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPP-EV--   79 (403)
T ss_dssp             HHHHHHHHHHHHGGGGGG-------SS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCC-HH--
T ss_pred             HHHHHHHHHHHHHhhccC-------CC-CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCH-HH--
Confidence            356788888888765311       12 578999999999999999999999999999999999998876 2223 32  


Q ss_pred             HHhhhhcccccCCCCCCCcEEEEccCCCCcc----chhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCC
Q 025326           83 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTG  158 (254)
Q Consensus        83 ~l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~----~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g  158 (254)
                       ++.....+++|+|++||||++++++.++++    ..+.+++++++++++|...+. ++..+...+.++.|+++|+|++|
T Consensus        80 -~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~-~~~~s~~~g~~v~~~~~I~D~~g  157 (403)
T 1olm_A           80 -IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQE-CAHQTTKLGRKVETITIIYDCEG  157 (403)
T ss_dssp             -HHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCCCCEEEEEECTT
T ss_pred             -HHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHH-HHhhHHhhCCcccceEEEEECCC
Confidence             233345567899999999999999998876    357789999999999987763 33344445667899999999999


Q ss_pred             CCcccccc--hHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCc
Q 025326          159 LKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQL  236 (254)
Q Consensus       159 ~~~~~~~~--~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~L  236 (254)
                      +++++++.  ++.++.++.++|++||+|++++||||+|++|..+|+++||||+++|++||+++++++.++|.++||+++|
T Consensus       158 ~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~L  237 (403)
T 1olm_A          158 LGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV  237 (403)
T ss_dssp             CCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhC
Confidence            99999853  5678999999999999999999999999999999999999999999999999876556799999999999


Q ss_pred             ccccCCCccccc
Q 025326          237 TFLSAHSCNRLT  248 (254)
Q Consensus       237 P~~~GG~~~~~~  248 (254)
                      |++|||+++++.
T Consensus       238 P~~yGG~~~~~~  249 (403)
T 1olm_A          238 PVEYGGTMTDPD  249 (403)
T ss_dssp             BGGGTSSBCCTT
T ss_pred             chhhCCCcCCCC
Confidence            999999998753

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=99.37  E-value=5.1e-13  Score=109.34  Aligned_cols=136  Identities=13%  Similarity=0.035  Sum_probs=108.4

Q ss_pred             hhhhcccccCCCCCCCcEEEEccCCCCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCCcccc
Q 025326           85 RDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSAL  164 (254)
Q Consensus        85 ~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~~~~~  164 (254)
                      ......+-.|.|++|+||+++..++......+.+.++.+.+..++.           .   -.....+|+|+.|++..+.
T Consensus         8 ~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~-----------~---~~~~y~lV~d~T~~~~~n~   73 (256)
T 3pg7_A            8 KTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKP-----------Y---YAKPYEIVVDLTHTGPSNR   73 (256)
T ss_dssp             HHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTT-----------T---TTSCEEEEEECTTCCGGGC
T ss_pred             HHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHH-----------h---cCCCeEEEEECCCCCcccC
Confidence            3344556669999999999999998876666766666554433221           1   1246899999999999888


Q ss_pred             cchHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHH-hcccCChhhhcceEEecCCCHhHHhhhCCCCCc
Q 025326          165 NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKV-VKPLLQERTRRKMQVLQGNGRDELLKVRQLFQL  236 (254)
Q Consensus       165 ~~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~-vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~L  236 (254)
                      +..++++.+.+++...|...++++|++||+++++..++. .+++.+.+..+|++++++  .++|.++|+.++|
T Consensus        74 p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L  144 (256)
T 3pg7_A           74 FKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ  144 (256)
T ss_dssp             CCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred             CcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence            778899999999999999999999999999999976665 466777788899999885  8999999987665

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=93.40  E-value=0.17  Score=30.88  Aligned_cols=27  Identities=19%  Similarity=0.177  Sum_probs=24.3

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKMLVD   57 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l~~   57 (254)
                      ..+...+..-|+++++|++.|+..|.+
T Consensus        22 ~ld~~~I~~vL~a~~gdvd~aI~~LL~   48 (59)
T 1wgl_A           22 NMDQEVIRSVLEAQRGNKDAAINSLLQ   48 (59)
T ss_dssp             SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            578889999999999999999999865

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}

Probab=91.93  E-value=0.35  Score=27.69  Aligned_cols=24  Identities=21%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             CCCh-HHHHHHHhhcCCCHHHHHHH
Q 025326           31 GNPT-DTLVRFLKARDWNVSKAHKM   54 (254)
Q Consensus        31 ~~~d-~~llRfL~a~~~dv~ka~~~   54 (254)
                      +.+| .....||.+++||++.|+..
T Consensus        17 G~~d~~~A~~~Lea~nWDLe~Av~~   41 (45)
T 3e21_A           17 GIENIDEAITLLEQNNWDLVAAING   41 (45)
T ss_dssp             CCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred             CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence            3666 78899999999999999753

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=89.56  E-value=0.66  Score=29.31  Aligned_cols=27  Identities=4%  Similarity=0.102  Sum_probs=24.4

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKMLVD   57 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l~~   57 (254)
                      ++.+.++.++|..++.|++.++..|.+
T Consensus        26 dLG~gfi~~~L~~y~~nvE~vin~LLE   52 (71)
T 2di0_A           26 DLGEGFILACLEYYHYDPEQVINNILE   52 (71)
T ss_dssp             SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            588999999999999999999998844

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=88.52  E-value=1  Score=24.60  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=21.1

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKML   55 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l   55 (254)
                      +++.....+.|+++++|+++|...|
T Consensus        15 Gf~~~~a~~AL~~~~~n~e~A~~~L   39 (40)
T 1z96_A           15 GFDPLEAAQALDAANGDLDVAASFL   39 (40)
T ss_dssp             TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            5777778899999999999998754

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.49  E-value=0.95  Score=28.30  Aligned_cols=28  Identities=18%  Similarity=0.137  Sum_probs=24.9

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      ..|...+..-|+++++|++.|++.|.+.
T Consensus        31 ~lD~~vI~~vL~a~~G~vd~aId~LL~m   58 (67)
T 2dhy_A           31 NMDYDIIECVLRANSGAVDATIDQLLQM   58 (67)
T ss_dssp             SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            5788899999999999999999998664

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=88.25  E-value=1.4  Score=26.24  Aligned_cols=28  Identities=21%  Similarity=0.110  Sum_probs=22.6

Q ss_pred             CCChH-HHHHHHhhcCCCHHHHHHHHHHH
Q 025326           31 GNPTD-TLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus        31 ~~~d~-~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      +++|. -.++-|++.++|+++|+..|...
T Consensus        20 GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~   48 (54)
T 2dah_A           20 GFLNREANLQALIATGGDVDAAVEKLRQS   48 (54)
T ss_dssp             TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            56554 46999999999999999888654

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=87.77  E-value=1.2  Score=25.97  Aligned_cols=28  Identities=11%  Similarity=0.071  Sum_probs=24.4

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      ..+-..+.+.|..+++|+++|.+.|.+.
T Consensus        17 ~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~   44 (49)
T 1otr_A           17 AISKSKLQVHLLENNNDLDLTIGLLLKE   44 (49)
T ss_dssp             SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            4677789999999999999999998764

>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1

Probab=86.87  E-value=2.6  Score=27.32  Aligned_cols=43  Identities=19%  Similarity=0.312  Sum_probs=32.8

Q ss_pred             HHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326           13 LMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      .|..+.+.+|..   +-+.++|..|.+-...++||++||...+.+.
T Consensus        33 rL~SCLd~iR~V---lGdsV~e~~Lv~ailk~dfD~ekALd~vL~~   75 (83)
T 1ufz_A           33 RLYSCLDHMREV---LGDAVPDDILTEAILKHKFDVQKALSVVLEQ   75 (83)
T ss_dssp             HHHHHHHHHHHH---TTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence            445555555553   3456889999999999999999999988654

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=85.04  E-value=1.7  Score=24.65  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=21.6

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKML   55 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l   55 (254)
                      +.+......||.+++||++.|...+
T Consensus        17 g~~~~~A~~~L~~~~wdle~Ai~~f   41 (46)
T 1v92_A           17 GAEEDRARFFLESAGWDLQIALASF   41 (46)
T ss_dssp             CCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred             CcCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4577889999999999999998765

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=85.02  E-value=2.6  Score=26.24  Aligned_cols=27  Identities=22%  Similarity=0.096  Sum_probs=21.7

Q ss_pred             CCC-hHHHHHHHhhcCCCHHHHHHHHHH
Q 025326           31 GNP-TDTLVRFLKARDWNVSKAHKMLVD   57 (254)
Q Consensus        31 ~~~-d~~llRfL~a~~~dv~ka~~~l~~   57 (254)
                      .+. +..-++-|++.++|+++|++.|..
T Consensus        30 GF~d~~an~~AL~at~Gnve~Ave~L~~   57 (67)
T 2dna_A           30 GFVNYNANLQALIATDGDTNAAIYKLKS   57 (67)
T ss_dssp             TCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            454 445599999999999999888754

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=84.31  E-value=2.6  Score=25.43  Aligned_cols=27  Identities=26%  Similarity=0.194  Sum_probs=22.0

Q ss_pred             CC-ChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326           31 GN-PTDTLVRFLKARDWNVSKAHKMLVD   57 (254)
Q Consensus        31 ~~-~d~~llRfL~a~~~dv~ka~~~l~~   57 (254)
                      .+ ++...++-|++.++|+++|++.|..
T Consensus        28 GF~d~~~~~~AL~~~~gnve~Ave~L~~   55 (58)
T 1wr1_B           28 GFFDFDRNVAALRRSGGSVQGALDSLLN   55 (58)
T ss_dssp             TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            45 4556699999999999999988754

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=82.93  E-value=3.2  Score=26.43  Aligned_cols=26  Identities=31%  Similarity=0.349  Sum_probs=21.4

Q ss_pred             CC-ChHHHHHHHhhcCCCHHHHHHHHH
Q 025326           31 GN-PTDTLVRFLKARDWNVSKAHKMLV   56 (254)
Q Consensus        31 ~~-~d~~llRfL~a~~~dv~ka~~~l~   56 (254)
                      ++ ++...++-|++.++|+++|+..|.
T Consensus        40 GF~dr~~~~~AL~~t~Gnve~Ave~L~   66 (74)
T 1vej_A           40 GFANRDANLQALVATDGDIHAAIEMLL   66 (74)
T ss_dssp             TCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence            45 456679999999999999988874

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=82.53  E-value=2.6  Score=25.98  Aligned_cols=41  Identities=10%  Similarity=0.019  Sum_probs=29.8

Q ss_pred             chHHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326            2 AHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus         2 ~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      ++.+.|++||+...                ..-...-+-|..+++|+++|+..|++.
T Consensus         8 it~~~Vk~LRe~TG----------------ag~~dcKkAL~e~~GDi~~Ai~~Lr~k   48 (64)
T 2cp9_A            8 SSKELLMKLRRKTG----------------YSFVNCKKALETCGGDLKQAEIWLHKE   48 (64)
T ss_dssp             CCCHHHHHHHHHHC----------------CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhC----------------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            45567777777654                344456677888999999999988754

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.48  E-value=3.2  Score=25.35  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.7

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKML   55 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l   55 (254)
                      ..+......||.+++||++.|+..+
T Consensus        27 g~~~~~A~~~Le~~~WnLe~Av~~f   51 (62)
T 2dal_A           27 GASESVGKHMLEACNNNLEMAVTMF   51 (62)
T ss_dssp             CCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4667889999999999999998765

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=81.43  E-value=4.8  Score=26.21  Aligned_cols=28  Identities=25%  Similarity=0.087  Sum_probs=23.3

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      +++.....+-|+++++|+++|+.-|..+
T Consensus        40 GF~~~~A~~AL~~t~gdve~A~e~L~sh   67 (83)
T 1veg_A           40 GFDTVVAEAALRVFGGNVQLAAQTLAHH   67 (83)
T ss_dssp             SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            5777888889999999999998887655

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=80.63  E-value=3.4  Score=24.23  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=21.8

Q ss_pred             CC-ChHHHHHHHhhcCCCHHHHHHHHH
Q 025326           31 GN-PTDTLVRFLKARDWNVSKAHKMLV   56 (254)
Q Consensus        31 ~~-~d~~llRfL~a~~~dv~ka~~~l~   56 (254)
                      ++ +....++-|+++++|+++|++.|.
T Consensus        23 GF~~~~~~~~AL~~t~gn~e~A~e~L~   49 (52)
T 2jy5_A           23 GFLNREANLQALIATGGDINAAIERLL   49 (52)
T ss_dssp             TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence            56 677789999999999999988763

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=80.25  E-value=3.7  Score=25.19  Aligned_cols=28  Identities=18%  Similarity=0.189  Sum_probs=23.2

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      .++.....+-|+++++|+++|+.-|..+
T Consensus        20 GF~~~~a~~AL~~~~~nve~A~e~L~~~   47 (63)
T 1wji_A           20 GFSKEASRQALMDNGNNLEAALNVLLTS   47 (63)
T ss_dssp             TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            5777778889999999999998877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d1olma3	199	c.13.1.1 (A:76-274) Supernatant protein factor (SP	2e-23
d1auaa2	203	c.13.1.1 (A:97-299) C-terminal domain of phosphati	3e-21
d1olma1	75	a.5.3.1 (A:1-75) Supernatant protein factor (SPF),	3e-15
d1auaa1	93	a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl	6e-14
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	2e-12
d1r5la1	66	a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei	8e-07

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.7 bits (227), Expect = 2e-23
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 7/145 (4%)

Query: 91  GVSGYSKEGLPVIAVGVGLST----HDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRY 146
           G+ GY  +G PV    +G          AS    +++ ++  E   +      + K GR 
Sbjct: 12  GMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQE-CAHQTTKLGRK 70

Query: 147 IGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204
           + T   + D  GL L  L +  ++       + + NYPE  +  ++V AP +F   + ++
Sbjct: 71  VETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLI 130

Query: 205 KPLLQERTRRKMQVLQGNGRDELLK 229
           KP L E TR+K+ VL  N ++ LLK
Sbjct: 131 KPFLSEDTRKKIMVLGANWKEVLLK 155

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.0 bits (212), Expect = 3e-21
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 5/144 (3%)

Query: 91  GVSGYSKEGLPVIAVGVGL----STHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRY 146
                 K+G PV    +G       +   S    +++ +   E   +  LP+ S+  G  
Sbjct: 14  YYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHL 73

Query: 147 IGTSLKVLDMTGLKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 205
           + TS  ++D+ G+ +S+    +  +   + I    YPE+   +YI+NAP+ FS  +++ K
Sbjct: 74  VETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFK 133

Query: 206 PLLQERTRRKMQVLQGNGRDELLK 229
           P L   T  K+ +L  + + ELLK
Sbjct: 134 PFLDPVTVSKIFILGSSYQKELLK 157

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (163), Expect = 3e-15
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 4  QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRI 63
          +E + +F+  ++D+  +L               L+R+L+AR +++ K+  ML   + +R 
Sbjct: 13 KEALAKFRENVQDVLPALPNP--------DDYFLLRWLRARSFDLQKSEAMLRKHVEFRK 64

Query: 64 ENDIDNILA 72
          + DIDNI++
Sbjct: 65 QKDIDNIIS 73

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.7 bits (155), Expect = 6e-14
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 19 DSLKETFKNVHQGNPTD--TLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNIL 71
            L++  ++       D  TL+RFL+AR ++V  A +M  +C +WR +   D IL
Sbjct: 35 AELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTIL 89

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 10/139 (7%)

Query: 94  GYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKV 153
                G  V+   +        +     +  +  +E           ++          +
Sbjct: 16  SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSEL--------IVQEVETQRNGIKAI 67

Query: 154 LDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQER 211
            D+ G + S   Q    +   I  +   ++P K    +++N P IF A + ++KP L E+
Sbjct: 68  FDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEK 127

Query: 212 TRRKMQVLQGNGRDELLKV 230
            + ++ +   N +  LL+ 
Sbjct: 128 IKERIHMHGNNYKQSLLQH 146

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 8e-07
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 36 TLVRFLKARDWNVSKAHKMLVDCLRWRIEN 65
           L+RFL+ARD+++  A ++L +  +WR E 
Sbjct: 27 FLLRFLRARDFDLDLAWRLLKNYYKWRAEC 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	100.0
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	100.0
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	100.0
d1olma1	75	Supernatant protein factor (SPF), N-terminal domai	99.53
d1auaa1	93	N-terminal domain of phosphatidylinositol transfer	99.45
d1r5la1	66	Alpha-tocopherol transfer protein {Human (Homo sap	99.37
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	92.56
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	89.35
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	89.13
d2di0a1	63	Activating signal cointegrator 1 complex subunit 2	88.35
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	87.5
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	86.12
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	84.45
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	83.72
d1ufza_	83	HBS1-like protein {Mouse (Mus musculus) [TaxId: 10	81.5
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	80.13

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-38  Score=249.80  Aligned_cols=165  Identities=25%  Similarity=0.330  Sum_probs=146.5

Q ss_pred             HhhhhcccccCCCCCCCcEEEEccCCCCccc----hhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCC
Q 025326           84 VRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGL  159 (254)
Q Consensus        84 l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~  159 (254)
                      ++++.+.++||+|++||||+++++|.+|++.    .+.++++++.++.+|...+. +...+...+.+++++++|+|++|+
T Consensus         5 i~~~~p~~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~-~~~~~~~~~~~v~~~~~I~Dl~g~   83 (199)
T d1olma3           5 IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQE-CAHQTTKLGRKVETITIIYDCEGL   83 (199)
T ss_dssp             HHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCCCCEEEEEECTTC
T ss_pred             HHHHCCCccccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHH-HHHHHHhcCCccceEEEEEECCCC
Confidence            4567788899999999999999999988753    46788999999999998764 344445567778999999999999


Q ss_pred             Ccccccc--hHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCcc
Q 025326          160 KLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLT  237 (254)
Q Consensus       160 ~~~~~~~--~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP  237 (254)
                      ++++++.  +++++.++.++|++||+|++++||||+|++|+.+|+++||||+++|++||+++++++.+.|.++|++++||
T Consensus        84 s~~~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~~~~~~L~~~i~~~~lP  163 (199)
T d1olma3          84 GLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVP  163 (199)
T ss_dssp             CGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSB
T ss_pred             chhhhccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCCCCHHHHHHhCCHhhCC
Confidence            9999874  56799999999999999999999999999999999999999999999999999877779999999999999


Q ss_pred             cccCCCccccch
Q 025326          238 FLSAHSCNRLTI  249 (254)
Q Consensus       238 ~~~GG~~~~~~~  249 (254)
                      ++|||+|+++++
T Consensus       164 ~~yGGt~~~~~~  175 (199)
T d1olma3         164 VEYGGTMTDPDG  175 (199)
T ss_dssp             GGGTSSBCCTTC
T ss_pred             HHhCCCCCCCCC
Confidence            999999988653

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-37  Score=245.57  Aligned_cols=166  Identities=23%  Similarity=0.316  Sum_probs=150.1

Q ss_pred             HhhhhcccccCCCCCCCcEEEEccCCCCccc----hhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCC
Q 025326           84 VRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGL  159 (254)
Q Consensus        84 l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~  159 (254)
                      +.++.+.++||+|++||||+++++|.+++..    .+.+++++++++.+|+..+..+.......+..++++++|+|++|+
T Consensus         7 ~~~~~p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g~   86 (203)
T d1auaa2           7 IAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGI   86 (203)
T ss_dssp             HGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC
T ss_pred             HHHHCCCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCCC
Confidence            4578889999999999999999999988753    477889999999999988876676666777788999999999999


Q ss_pred             Ccccccc-hHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCccc
Q 025326          160 KLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTF  238 (254)
Q Consensus       160 ~~~~~~~-~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP~  238 (254)
                      ++++++. ++.++.+++++|++||++++++||||+|++++++|+++|+||+++|++||+++++++.+.|.+++|+++||.
T Consensus        87 s~~~~~~~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~~~~~~L~~~id~~~LP~  166 (203)
T d1auaa2          87 SISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPV  166 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBG
T ss_pred             ChHHhhhHHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCCCCHHHHHhhCCHhhChH
Confidence            9999864 467899999999999999999999999999999999999999999999999998878899999999999999


Q ss_pred             ccCCCccccch
Q 025326          239 LSAHSCNRLTI  249 (254)
Q Consensus       239 ~~GG~~~~~~~  249 (254)
                      +|||+|+|.+.
T Consensus       167 ~~GG~~~~~~~  177 (203)
T d1auaa2         167 KFGGKSEVDES  177 (203)
T ss_dssp             GGTSCBCCCGG
T ss_pred             HhCCCCcCCCC
Confidence            99999998643

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-35  Score=229.07  Aligned_cols=160  Identities=13%  Similarity=0.116  Sum_probs=139.1

Q ss_pred             HHHHhhhhcccccCCCCCCCcEEEEccCCCCccchhHHHHHHHHHHHHHHHHhhcchhhhhhhCCccccEEEEEeCCCCC
Q 025326           81 YRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLK  160 (254)
Q Consensus        81 ~~~l~~~~~~~~~g~D~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~IiD~~g~~  160 (254)
                      .+.++.+.+..++|+|++||||++++++.+|++..+.+++++.+++.+|...+   +     ...+.+|+++|+|++|++
T Consensus         3 ~~~l~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~~~~~~~~r~~~~~~e~~~~---~-----~~~~~~g~~~I~D~~g~s   74 (185)
T d1r5la2           3 IGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQ---E-----VETQRNGIKAIFDLEGWQ   74 (185)
T ss_dssp             HHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTT---S-----HHHHHHCEEEEEECTTCC
T ss_pred             HHHHHcCCceecCCCCcCcCEEEEEEcccCCCCCCCHHHHHHHHHHHHHHHHh---c-----cccCCceEEEEEECCCCC
Confidence            45677888888999999999999999999999888889999999988886432   1     222457899999999999


Q ss_pred             ccccc--chHHHHHHHHhhhhcCccccceEEEEcCCcchHHHHHHhcccCChhhhcceEEecCCCHhHHhhhCCCCCccc
Q 025326          161 LSALN--QIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKVRQLFQLTF  238 (254)
Q Consensus       161 ~~~~~--~~~~~k~~~~~~~~~yP~rl~~i~vvN~p~~~~~~~~~vk~~l~~~t~~Ki~~~~~~~~~~L~~~i~~~~LP~  238 (254)
                      ++++.  .++.++.+++++|++||+|++++|+||+|++++.+|+++||||+++|++||+++++ +.+++.+++++++||+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~fl~~k~~~Ki~~~~~-~~~~~~~~~~~~~LP~  153 (185)
T d1r5la2          75 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-NYKQSLLQHFPDILPL  153 (185)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-SCHHHHHHHSTTTSCG
T ss_pred             HHHhhhccHHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHhccHHHHhheEEecc-chHHHHhhcCHHhCCH
Confidence            99874  36789999999999999999999999999999999999999999999999999765 4567777788999999


Q ss_pred             ccCCCccccch
Q 025326          239 LSAHSCNRLTI  249 (254)
Q Consensus       239 ~~GG~~~~~~~  249 (254)
                      +|||+++++.+
T Consensus       154 ~~GG~~~~~~~  164 (185)
T d1r5la2         154 EYGGEEFSMED  164 (185)
T ss_dssp             GGTCSSCCHHH
T ss_pred             hcCCCCCChHH
Confidence            99999987554

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.2e-14  Score=93.53  Aligned_cols=60  Identities=28%  Similarity=0.512  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhc
Q 025326            4 QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNIL   71 (254)
Q Consensus         4 ~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~   71 (254)
                      ++++++||+.+++..        ......||.+|+|||+|++||+++|.+++.++++||+++++|+|+
T Consensus        13 ~~~l~elr~~l~~~~--------~~~~~~dd~~LlRFLrAr~fdv~kA~~ml~~~l~WR~~~~vD~Il   72 (75)
T d1olma1          13 KEALAKFRENVQDVL--------PALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII   72 (75)
T ss_dssp             HHHHHHHHHHHGGGG--------GGSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGG
T ss_pred             HHHHHHHHHHHHhhc--------ccCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHcCchhhh
Confidence            446677777666532        123457899999999999999999999999999999999999875

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=6.4e-14  Score=94.63  Aligned_cols=60  Identities=32%  Similarity=0.636  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCCcchhcc
Q 025326            4 QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILA   72 (254)
Q Consensus         4 ~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~~d~~~~   72 (254)
                      ++++++||+++.+..         .+..+||.+|+|||+|++||+++|.++|.++++||+++++|+|+.
T Consensus        31 ~~~L~elr~~l~~~~---------~~~~~DD~~llRfLrAr~fd~~~a~~ml~~~l~wR~~~~~d~i~~   90 (93)
T d1auaa1          31 EKALAELRKLLEDAG---------FIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQ   90 (93)
T ss_dssp             HHHHHHHHHHHHHTT---------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHH
T ss_pred             HHHHHHHHHHHHHCC---------CCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCcchhhh
Confidence            456777777766543         345689999999999999999999999999999999999998764

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-13  Score=85.48  Aligned_cols=57  Identities=23%  Similarity=0.385  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhCC
Q 025326            4 QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIEND   66 (254)
Q Consensus         4 ~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~~~wR~~~~   66 (254)
                      ++++++||+++++...      ..+|...+|.+|+|||||++||+++|.++|.++++||++++
T Consensus         1 q~aL~elR~~l~~~~~------p~lp~~~dD~~LlrFLRarkf~~~ka~~~l~~y~~~R~~~p   57 (66)
T d1r5la1           1 QPGLAALRRRAREAGV------PLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP   57 (66)
T ss_dssp             CTTHHHHHHHHHHHTC------CCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHHHcCC------CcCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHCH
Confidence            4678899988876531      12456789999999999999999999999999999999984

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.13  Score=29.86  Aligned_cols=28  Identities=18%  Similarity=0.160  Sum_probs=24.9

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      +.|+..+..-|+++++|++.|+..|...
T Consensus        22 ~~D~~vI~~VL~a~~G~vd~aid~LL~M   49 (59)
T d1wgla_          22 NMDQEVIRSVLEAQRGNKDAAINSLLQM   49 (59)
T ss_dssp             SSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            6888899999999999999999998653

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=89.35  E-value=0.52  Score=26.83  Aligned_cols=41  Identities=10%  Similarity=0.034  Sum_probs=30.1

Q ss_pred             chHHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326            2 AHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus         2 ~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      ++.+.|++||+...                .+=...-+-|..+++|+++|.+-|++.
T Consensus         3 ~s~~lvk~LRe~Tg----------------a~~~dcKkAL~e~~gD~ekA~e~Lrkk   43 (56)
T d1xb2b1           3 SSKELLMKLRRKTG----------------YSFINCKKALETCGGDLKQAESWLHKQ   43 (56)
T ss_dssp             HHHHHHHHHHHHHC----------------CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhC----------------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            45667777777655                333456677889999999999988763

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.13  E-value=0.61  Score=26.33  Aligned_cols=40  Identities=8%  Similarity=-0.011  Sum_probs=29.5

Q ss_pred             chHHHHHHHHHHHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326            2 AHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVD   57 (254)
Q Consensus         2 ~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~   57 (254)
                      ++.+.|++||+....-                =...-+-|..+++|+++|.+-|++
T Consensus         3 is~~~iK~LR~~Tgag----------------~~dCKkAL~e~~gD~ekA~e~Lr~   42 (54)
T d1efub3           3 ITASLVKELRERTGAG----------------MMDCKKALTEANGDIELAIENMRK   42 (54)
T ss_dssp             CCHHHHHHHHHHHCCC----------------HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCC----------------HHHHHHHHHHcCCCHHHHHHHHHH
Confidence            5778888888876533                234556677889999999888864

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Activating signal cointegrator 1 complex subunit 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.36  Score=28.19  Aligned_cols=27  Identities=4%  Similarity=0.102  Sum_probs=24.4

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKMLVD   57 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l~~   57 (254)
                      +..+.++.+.|..+++|+++++..|..
T Consensus        19 dLG~GFi~~~L~~Y~~n~E~vI~~lLe   45 (63)
T d2di0a1          19 DLGEGFILACLEYYHYDPEQVINNILE   45 (63)
T ss_dssp             SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            488999999999999999999998854

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.50  E-value=0.52  Score=25.71  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=21.3

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKML   55 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l   55 (254)
                      +.+......||.+++||++.|+..+
T Consensus        17 g~~~~~A~~~Le~~~w~Le~Ai~~y   41 (46)
T d1v92a_          17 GAEEDRARFFLESAGWDLQIALASF   41 (46)
T ss_dssp             CCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred             CcCHHHHHHHHHHcCCcHHHHHHHH
Confidence            3667788899999999999998765

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.12  E-value=1.4  Score=24.70  Aligned_cols=28  Identities=7%  Similarity=0.026  Sum_probs=24.9

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326           31 GNPTDTLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus        31 ~~~d~~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      +.|...+---|++++++++.|+..|...
T Consensus        25 ~~D~~VI~~VL~a~~G~vd~aidaLL~M   52 (54)
T d1mn3a_          25 DMDPSLIEDVCIAKKSRIEPCVDALLSL   52 (54)
T ss_dssp             TSCHHHHHHHHSCSSCSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            5888899999999999999999988654

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.45  E-value=0.67  Score=28.00  Aligned_cols=27  Identities=22%  Similarity=0.195  Sum_probs=21.9

Q ss_pred             CCCChHHHHHHHhhcCCCHHHHHHHHH
Q 025326           30 QGNPTDTLVRFLKARDWNVSKAHKMLV   56 (254)
Q Consensus        30 ~~~~d~~llRfL~a~~~dv~ka~~~l~   56 (254)
                      -.++.....+-|+++++|+++|+..|.
T Consensus        39 MGF~~~~a~~AL~~~~~n~e~A~~~Ll   65 (73)
T d1vg5a_          39 MGFDRTQVEVALAAADDDLTVAVEILM   65 (73)
T ss_dssp             TTCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence            367777888889999999999988764

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.72  E-value=0.79  Score=24.25  Aligned_cols=26  Identities=19%  Similarity=0.082  Sum_probs=23.0

Q ss_pred             CChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326           32 NPTDTLVRFLKARDWNVSKAHKMLVD   57 (254)
Q Consensus        32 ~~d~~llRfL~a~~~dv~ka~~~l~~   57 (254)
                      .|+..-++-|.+.++||++|++.|.+
T Consensus        15 ~d~~~Ni~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1          15 LNREANLQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            56778899999999999999999865

>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: HBS1-like domain
family: HBS1-like domain
domain: HBS1-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.50  E-value=3  Score=25.42  Aligned_cols=43  Identities=19%  Similarity=0.312  Sum_probs=32.0

Q ss_pred             HHHhhhHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 025326           13 LMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC   58 (254)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~d~~llRfL~a~~~dv~ka~~~l~~~   58 (254)
                      .|..+.+.+|..   +-+.+++..|..-....+||++||...+.+.
T Consensus        33 RL~SCldqmR~V---vGDsvpe~~lv~avlk~dydvekALd~vL~~   75 (83)
T d1ufza_          33 RLYSCLDHMREV---LGDAVPDDILTEAILKHKFDVQKALSVVLEQ   75 (83)
T ss_dssp             HHHHHHHHHHHH---TTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HcccCCHHHHHHHHHHccCCHHHHHHHHHhc
Confidence            344455555543   3456789999999999999999999887653

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.13  E-value=2.7  Score=23.31  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             CChHHHHHHHhhcCCCHHHHHHHHHH
Q 025326           32 NPTDTLVRFLKARDWNVSKAHKMLVD   57 (254)
Q Consensus        32 ~~d~~llRfL~a~~~dv~ka~~~l~~   57 (254)
                      .+=...-.-|..+++|+++|.+-|++
T Consensus        15 a~~~dcKkAL~e~~gD~ekA~e~Lr~   40 (52)
T d1aipc1          15 AGMMDVKRALEDAGWDEEKAVQLLRE   40 (52)
T ss_dssp             CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            33345667788899999999988864