Citrus Sinensis ID: 025332

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MASSSNNNGDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH
ccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcccccccc
*********************RPWNAEIIDALPYIDDDYADPRVKEEVD*********************PPLSKFRFENHPMLA*************VLDTTRYQLEIL**********WKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNR**KYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES*WNLD***************
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MASSSNNNGDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAYELNALSTQWRELCAKxxxxxxxxxxxxxxxxxxxxxAAESGWNLDIDMEKGFLAQSGQVH

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Pre-mRNA-splicing factor SPF27 homolog Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Involved in mRNA splicing.probableQ949S9
Pre-mRNA-splicing factor SPF27 Involved in mRNA splicing.probableQ6PBE2
Pre-mRNA-splicing factor SPF27 Involved in mRNA splicing.probableQ5RKQ0

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3VMX, chain A
Confidence level:probable
Coverage over the Query: 193-236
View the alignment between query and template
View the model in PyMOL
Template: 3MQ9, chain A
Confidence level:probable
Coverage over the Query: 144-232
View the alignment between query and template
View the model in PyMOL