Citrus Sinensis ID: 025332

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MASSSNNNGDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH
Secondary Structure (PSIPRED)
ccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccHHHHHHHHHHHcccccccccccHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccc
Coil and Loop (DISEMBL)
masssnnngdilmleappdaarpwnaeiidalpyidddyadprvKEEVDRMVEQEMrrsskkpsdflknlpplskfrfenhpmLAKEYErvragkppavldTTRYQLEilpankrndESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH
Flexible Loop (DISEMBL)
masssnnngdILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQemrrsskkpsdflknlpplskfrfeNHPMLAKEyervragkppavLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH
Low Complexity Region (SEG)
MASSSNNNGDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH
Disordered region (IsUnstruct)
*********************RPWNAEIIDALPYIDDDYA**********************************************************VLDTTRYQLEIL************************QLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQR*****************YHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDID*************
Disordered Region (DISOPRED)
**************************EIIDALPYIDDDYADPRVKEEVD*********************PPLSKFRFENHPMLA***********************************WKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNR**K***********ALSTQWRELCAKNIEIQAACANIES********************************
Disordered Region (DISEMBL)
********GDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVD**************SDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRN***************SQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH
Disordered Region (DISPRO)
********GDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES*WNLD***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSNNNGDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAYELNALSTQWRELCAKxxxxxxxxxxxxxxxxxxxxxAAESGWNLDIDMEKGFLAQSGQVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q949S9	253	Pre-mRNA-splicing factor	yes	no	0.940	0.944	0.696	3e-96
Q6PBE2	223	Pre-mRNA-splicing factor	yes	no	0.826	0.941	0.320	3e-23
Q9D287	225	Pre-mRNA-splicing factor	yes	no	0.799	0.902	0.311	2e-22
O75934	225	Pre-mRNA-splicing factor	yes	no	0.799	0.902	0.311	2e-22
Q5RAX7	226	Pre-mRNA-splicing factor	yes	no	0.799	0.898	0.319	3e-22
Q5RKQ0	225	Pre-mRNA-splicing factor	yes	no	0.803	0.906	0.300	5e-21
Q54SG7	226	Pre-mRNA-splicing factor	yes	no	0.775	0.871	0.301	9e-19

>sp|Q949S9|SPF27_ARATH Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1

 Score =  351 bits (901), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/244 (69%), Positives = 203/244 (83%), Gaps = 5/244 (2%)

Query: 5   SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
           + NNGD+LMLEA P+AARPW    NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct: 2   ATNNGDVLMLEATPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61

Query: 61  KKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDT-TRYQLEILPANKRNDES 119
           KKP+DFLK+LPPL KF F+N P+L KEYERVRAGKPP  +D  +RY+LE+ PANKRND++
Sbjct: 62  KKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDA 121

Query: 120 AWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIE 179
           AWKQ LQK QR  Q +LI LENLELMSK GPE+WRQ+N RLE  L  MQRLAQEQNE+IE
Sbjct: 122 AWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIE 181

Query: 180 AVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 239
            VNRERKYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ I+  +KEAAE GWNL+
Sbjct: 182 KVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLE 241

Query: 240 IDME 243
             +E
Sbjct: 242 EKLE 245

Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Involved in mRNA splicing.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6PBE2|SPF27_XENTR Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 118/212 (55%), Gaps = 2/212 (0%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
           ++DALPY D  Y    V+E    +VE+E RR  +   ++L  LP      FE   M   E
Sbjct: 12  VVDALPYFDQGYDAQGVREAAAALVEEETRRY-RPTKNYLSYLPTPDYSAFETEIM-RNE 69

Query: 88  YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
           +ER+ + +P  +L   RY+L    + +RND +AW++ +  +    +HQ +R+ENLELMS+
Sbjct: 70  FERLSSRQPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query: 148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
           HG   W+ +N+ L  ++   Q+  Q+  +KI+ +N +RK  Q      L  + + W  L 
Sbjct: 130 HGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLREMESTWVSLV 189

Query: 208 AKNIEIQAACANIESHIEELRKEAAESGWNLD 239
           +KN EI+ A   +E+ + +L++ + E+  N++
Sbjct: 190 SKNYEIERAIVQMENEVYQLKERSGENKENIE 221

Involved in mRNA splicing.

Xenopus tropicalis (taxid: 8364)

>sp|Q9D287|SPF27_MOUSE Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=2 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 117/209 (55%), Gaps = 6/209 (2%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
           ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L  P  S F  +   ++ 
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67

Query: 86  KEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELM 145
            E+ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELM
Sbjct: 68  NEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELM 127

Query: 146 SKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRE 205
           S+HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  
Sbjct: 128 SQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVS 187

Query: 206 LCAKNIEIQAACANIESHIEELRKEAAES 234
           L +KN EI+     +E+ I +++++  E+
Sbjct: 188 LVSKNYEIERTIVQLENEIYQIKQQHGEA 216

Involved in mRNA splicing.

Mus musculus (taxid: 10090)

>sp|O75934|SPF27_HUMAN Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 117/209 (55%), Gaps = 6/209 (2%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
           ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L  P  S F  +   ++ 
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67

Query: 86  KEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELM 145
            E+ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELM
Sbjct: 68  NEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELM 127

Query: 146 SKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRE 205
           S+HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  
Sbjct: 128 SQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVS 187

Query: 206 LCAKNIEIQAACANIESHIEELRKEAAES 234
           L +KN EI+     +E+ I +++++  E+
Sbjct: 188 LVSKNYEIERTIVQLENEIYQIKQQHGEA 216

Involved in mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q5RAX7|SPF27_PONAB Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 118/210 (56%), Gaps = 7/210 (3%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
           ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L  P  S F  +   ++ 
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67

Query: 86  KEYERVRAGKPPAVLDTTRYQLEILPAN-KRNDESAWKQALQKAQRLSQHQLIRLENLEL 144
            E+ER+ A +P  +L   RY+L   P+  K+ND +AW++ +  +    +HQ +R+ENLEL
Sbjct: 68  NEFERLAARQPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIENLEL 127

Query: 145 MSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWR 204
           MS+HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W 
Sbjct: 128 MSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWV 187

Query: 205 ELCAKNIEIQAACANIESHIEELRKEAAES 234
            L +KN EI+     +E+ I +++++  E+
Sbjct: 188 SLVSKNYEIERTIVQLENEIYQIKQQHGEA 217

Involved in mRNA splicing.

Pongo abelii (taxid: 9601)

>sp|Q5RKQ0|SPF27_DANRE Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1

 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 111/206 (53%), Gaps = 2/206 (0%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
            +DALPY D  Y    V+E    +VE+E RR  +   ++L  LP      FE   ++  E
Sbjct: 12  FVDALPYFDQGYDATGVREAAAALVEEETRRY-RPTKNYLSYLPTPDFSAFETE-IMRNE 69

Query: 88  YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
           +ER+ A +P  +L   RY+L    + ++ND +AW+  +  +    +HQ +R+ENLELM++
Sbjct: 70  FERLAARQPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQ 129

Query: 148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
           +G   W+  N  L  ++   Q+  Q   ++I+ +N +RK  Q     +L  L + W  L 
Sbjct: 130 YGTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQRKNDQLAGGAKLRELESNWVSLV 189

Query: 208 AKNIEIQAACANIESHIEELRKEAAE 233
           +KN EI+ A   +E+ + +++++  +
Sbjct: 190 SKNYEIERAIVQLENEVAQMKQQQGD 215

Involved in mRNA splicing.

Danio rerio (taxid: 7955)

>sp|Q54SG7|SPF27_DICDI Pre-mRNA-splicing factor spf27 OS=Dictyostelium discoideum GN=spf27 PE=3 SV=2

 Score = 94.0 bits (232), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 108/202 (53%), Gaps = 5/202 (2%)

Query: 26  AEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLA 85
           AE ID+LPY+DD   +   +E +++++  EM  S+  P D+L  LP      + N   L 
Sbjct: 8   AENIDSLPYVDDS-VNENEQELINKLISDEM--STFTPPDYLAQLPSFIDIDYNNFQFLE 64

Query: 86  KEYERVRAGKPPAVLDTTRYQLE--ILPANKRNDESAWKQALQKAQRLSQHQLIRLENLE 143
            +++R+   +     D  RY++E       ++ +E  W  +L  A+   +HQ IR  NLE
Sbjct: 65  NDFKRMEKEEKMKEFDIGRYKVEPTTTMIKQQLNEKQWNDSLNNARSQLEHQDIRKINLE 124

Query: 144 LMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQW 203
           L+ ++G   W+ +   LE L   +++   ++ ++IE +N +RK  Q+ T  ++     ++
Sbjct: 125 LLQRYGGNSWKLYLSDLEILQKTLKKQLDQKKQQIEEINIQRKLSQEQTFEKIQQHDKKF 184

Query: 204 RELCAKNIEIQAACANIESHIE 225
            EL  KN EI++AC +IE  IE
Sbjct: 185 LELVYKNTEIESACKSIELEIE 206

Involved in mRNA splicing.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
225456087	256	PREDICTED: pre-mRNA-splicing factor SPF2	0.960	0.953	0.764	1e-105
224135477	255	predicted protein [Populus trichocarpa]	0.984	0.980	0.717	1e-102
449439443	256	PREDICTED: pre-mRNA-splicing factor SPF2	0.968	0.960	0.701	1e-102
388501430	248	unknown [Lotus japonicus]	0.952	0.975	0.693	2e-95
357521555	261	Pre-mRNA-splicing factor SPF27-like prot	0.952	0.927	0.688	2e-95
255577366	237	Breast carcinoma amplified sequence, put	0.897	0.962	0.738	5e-95
18401792	253	Pre-mRNA-splicing factor SPF27-like prot	0.940	0.944	0.696	2e-94
297830464	253	hypothetical protein ARALYDRAFT_479309 [	0.940	0.944	0.688	4e-93
9294072	286	unnamed protein product [Arabidopsis tha	0.940	0.835	0.613	1e-89
297734284	207	unnamed protein product [Vitis vinifera]	0.775	0.951	0.761	6e-82

>gi|225456087|ref|XP_002281066.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Vitis vinifera]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/246 (76%), Positives = 210/246 (85%), Gaps = 2/246 (0%)

Query: 7   NNGDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDF 66
           N+GDILMLEAPP A+RP  AE IDALPYIDDDY  P+VKEEVDR+VE EMRRSSKKPSDF
Sbjct: 3   NDGDILMLEAPPQASRP--AEFIDALPYIDDDYGHPKVKEEVDRLVEDEMRRSSKKPSDF 60

Query: 67  LKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQ 126
           LK+LPPL  F F NHPMLA+EYERVRAGKPP  LD +RY LE+ P NKRNDE+AWK ALQ
Sbjct: 61  LKDLPPLPPFGFHNHPMLAREYERVRAGKPPVALDMSRYGLEMPPMNKRNDETAWKHALQ 120

Query: 127 KAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERK 186
           KAQRL QHQ+IRLENLELMSKHG +VW+QHNQRLEA L  MQ LA EQNEKIE VNRERK
Sbjct: 121 KAQRLLQHQVIRLENLELMSKHGADVWKQHNQRLEAYLSRMQALAMEQNEKIETVNRERK 180

Query: 187 YHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGF 246
           YHQQNTA+ELNALS QW+ELC KNIEI+ ACA IE++IEELR+EAAE GWNLD +++ G 
Sbjct: 181 YHQQNTAFELNALSAQWKELCEKNIEIRTACAKIENNIEELRREAAERGWNLDANIDNGS 240

Query: 247 LAQSGQ 252
           L+ S Q
Sbjct: 241 LSHSEQ 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135477|ref|XP_002322083.1| predicted protein [Populus trichocarpa] gi|222869079|gb|EEF06210.1| predicted protein [Populus trichocarpa]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/255 (71%), Positives = 217/255 (85%), Gaps = 5/255 (1%)

Query: 1   MASSSNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEM 56
           MA+S++ NGD+LMLEA P+A+RPW    NAEIIDALPYIDDDY +P VK EVDR+VE+EM
Sbjct: 1   MATSNSANGDMLMLEAAPEASRPWSTSSNAEIIDALPYIDDDYGNPSVKAEVDRLVEEEM 60

Query: 57  RRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRY-QLEILPANKR 115
           RRSSKKPSDFLK LPP+ KF FEN+PMLAKEYERVRAG+PP  LD +RY  L++  ANK 
Sbjct: 61  RRSSKKPSDFLKELPPVPKFTFENYPMLAKEYERVRAGRPPVTLDFSRYSHLDLPAANKM 120

Query: 116 NDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQN 175
           NDE+AWKQALQ+AQRL QHQ+IRLENLELMSK+GPEVW QHN++LE +L   Q+LA+EQN
Sbjct: 121 NDETAWKQALQRAQRLLQHQVIRLENLELMSKYGPEVWIQHNRQLETMLTRTQKLAREQN 180

Query: 176 EKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESG 235
           EKIEAVNRERKYHQQNTAYELNALS QW+ELC KNIEIQ AC  IE+ IEEL++E++E G
Sbjct: 181 EKIEAVNRERKYHQQNTAYELNALSAQWKELCQKNIEIQEACIKIENQIEELKRESSERG 240

Query: 236 WNLDIDMEKGFLAQS 250
           WN++ ++E G L  S
Sbjct: 241 WNVEANIENGSLLHS 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439443|ref|XP_004137495.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] gi|449503115|ref|XP_004161841.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/251 (70%), Positives = 219/251 (87%), Gaps = 5/251 (1%)

Query: 3   SSSNNNGDILMLEAPPDAARP-W----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMR 57
           +++NNNGDILMLEAPP  ++P W    +AE+IDALPYIDDDYADPRVK EVDR+VE+EMR
Sbjct: 2   AANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMR 61

Query: 58  RSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRND 117
           RSSK+P+DFLK+LPPL KF+FE+HPMLA+EYERVRAG+PP  LD  RY+LE  P NK+ND
Sbjct: 62  RSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKND 121

Query: 118 ESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEK 177
           E+AWKQ LQKAQ L +HQ++RLENL+LMSK+GP++W+QHN++LEALL  MQ+LAQEQNEK
Sbjct: 122 ETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEK 181

Query: 178 IEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWN 237
           IE VNRERK+HQQN AYEL+ALSTQW+ELC KN+EIQ AC  +E  I+ELR+EAAE GWN
Sbjct: 182 IEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWN 241

Query: 238 LDIDMEKGFLA 248
           L++++E G ++
Sbjct: 242 LEVNVENGSVS 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501430|gb|AFK38781.1| unknown [Lotus japonicus]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/245 (69%), Positives = 201/245 (82%), Gaps = 3/245 (1%)

Query: 9   GDILMLEAPPDAA---RPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSD 65
           G++LMLEAPP      R  +AEIIDALPYIDDDY DPRVK EVDR+VE EMRRSSKKP+D
Sbjct: 2   GEVLMLEAPPSYGGLPRSSDAEIIDALPYIDDDYGDPRVKVEVDRLVEDEMRRSSKKPAD 61

Query: 66  FLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQAL 125
           FLK+ PPL     E +PM+A+EYERVRAG+PP  +D +RY+LEI P NKRNDE+AWK AL
Sbjct: 62  FLKDFPPLPTSNLEGYPMIAREYERVRAGRPPVSIDRSRYELEIPPLNKRNDETAWKHAL 121

Query: 126 QKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRER 185
           Q+AQRL Q+Q++R+EN+EL+ K+GP+ W+QHN RLE  LL MQ+LAQEQNEKIE VNRER
Sbjct: 122 QRAQRLLQYQMMRMENIELLLKYGPDAWKQHNHRLEVYLLRMQKLAQEQNEKIEKVNRER 181

Query: 186 KYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKG 245
           KYHQQNTAYELNALSTQW ELC KNI+I AACA++E+ I EL++EAAE GWNLD   E G
Sbjct: 182 KYHQQNTAYELNALSTQWNELCQKNIDINAACASVETRINELKREAAERGWNLDAISENG 241

Query: 246 FLAQS 250
            LA S
Sbjct: 242 QLANS 246

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521555|ref|XP_003631066.1| Pre-mRNA-splicing factor SPF27-like protein [Medicago truncatula] gi|355525088|gb|AET05542.1| Pre-mRNA-splicing factor SPF27-like protein [Medicago truncatula] gi|388502546|gb|AFK39339.1| unknown [Medicago truncatula]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/244 (68%), Positives = 200/244 (81%), Gaps = 2/244 (0%)

Query: 9   GDILMLEAPPDAARPW--NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDF 66
           GD+LMLEAPP   R    +AEIIDALPYIDDDY+DPRVK EVDR+VE+EMRRSSKKP+DF
Sbjct: 16  GDVLMLEAPPSYGRSSHSDAEIIDALPYIDDDYSDPRVKIEVDRLVEEEMRRSSKKPADF 75

Query: 67  LKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQ 126
           LK+ PPL    F ++PM+ +EYERVRAG+PP  LD +RY+LE  P NKRNDE+AWK A+Q
Sbjct: 76  LKDFPPLPSSNFHDYPMIGREYERVRAGRPPVSLDRSRYELEAPPVNKRNDETAWKLAIQ 135

Query: 127 KAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERK 186
           +AQRL Q+Q IR+ENL+L+ KHGP+ W+QHNQRLE  L  MQ+LAQEQN+KIE VNRERK
Sbjct: 136 RAQRLLQYQTIRMENLDLLFKHGPDAWKQHNQRLEVYLSRMQKLAQEQNDKIEKVNRERK 195

Query: 187 YHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGF 246
           YHQQNTAYELNALS QW ELC KNI+I+  CA++E+H+ ELR+EAAE GWNLD   E G 
Sbjct: 196 YHQQNTAYELNALSMQWNELCQKNIDIKVVCASVETHLNELRREAAERGWNLDAITENGQ 255

Query: 247 LAQS 250
           LA S
Sbjct: 256 LANS 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577366|ref|XP_002529563.1| Breast carcinoma amplified sequence, putative [Ricinus communis] gi|223530975|gb|EEF32832.1| Breast carcinoma amplified sequence, putative [Ricinus communis]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 172/233 (73%), Positives = 197/233 (84%), Gaps = 5/233 (2%)

Query: 6   NNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSK 61
             NG+ILMLEA P+A++ W    NAEI+DALPYIDD+Y +P +K EVDR+VE+EMRRS K
Sbjct: 5   TGNGEILMLEAAPEASKKWTHSTNAEIVDALPYIDDEYGNPSIKAEVDRLVEEEMRRSHK 64

Query: 62  KPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRY-QLEILPANKRNDESA 120
           KPSDFLK+LPPL  F FEN+PML KEYERVRAGKPP  LD +RY  L++  ANK NDE+A
Sbjct: 65  KPSDFLKDLPPLPTFTFENYPMLGKEYERVRAGKPPVTLDFSRYSHLDLPSANKMNDETA 124

Query: 121 WKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEA 180
           WKQALQ+ QRL QHQ+IRLENLELMSK+GP+VW QHN+ LEA+L  MQ+LAQEQNEKIEA
Sbjct: 125 WKQALQRGQRLLQHQVIRLENLELMSKYGPDVWIQHNRTLEAMLSRMQKLAQEQNEKIEA 184

Query: 181 VNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 233
           VNRERKYHQQNTAYELNALS QW+ELC KNIEIQAAC  IE  IEEL+KEAAE
Sbjct: 185 VNRERKYHQQNTAYELNALSMQWKELCLKNIEIQAACTKIEMQIEELKKEAAE 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401792|ref|NP_566599.1| Pre-mRNA-splicing factor SPF27-like protein [Arabidopsis thaliana] gi|75164860|sp|Q949S9.1|SPF27_ARATH RecName: Full=Pre-mRNA-splicing factor SPF27 homolog; AltName: Full=Modifier of SNC1 member 4; AltName: Full=Protein BCAS2 homolog gi|15292953|gb|AAK93587.1| unknown protein [Arabidopsis thaliana] gi|20259667|gb|AAM14351.1| unknown protein [Arabidopsis thaliana] gi|21593691|gb|AAM65658.1| unknown [Arabidopsis thaliana] gi|152014429|gb|ABS20115.1| modifier of SNC1 [Arabidopsis thaliana] gi|332642537|gb|AEE76058.1| Pre-mRNA-splicing factor SPF27-like protein [Arabidopsis thaliana]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/244 (69%), Positives = 203/244 (83%), Gaps = 5/244 (2%)

Query: 5   SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
           + NNGD+LMLEA P+AARPW    NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct: 2   ATNNGDVLMLEATPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61

Query: 61  KKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDT-TRYQLEILPANKRNDES 119
           KKP+DFLK+LPPL KF F+N P+L KEYERVRAGKPP  +D  +RY+LE+ PANKRND++
Sbjct: 62  KKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDA 121

Query: 120 AWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIE 179
           AWKQ LQK QR  Q +LI LENLELMSK GPE+WRQ+N RLE  L  MQRLAQEQNE+IE
Sbjct: 122 AWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIE 181

Query: 180 AVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 239
            VNRERKYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ I+  +KEAAE GWNL+
Sbjct: 182 KVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLE 241

Query: 240 IDME 243
             +E
Sbjct: 242 EKLE 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830464|ref|XP_002883114.1| hypothetical protein ARALYDRAFT_479309 [Arabidopsis lyrata subsp. lyrata] gi|297328954|gb|EFH59373.1| hypothetical protein ARALYDRAFT_479309 [Arabidopsis lyrata subsp. lyrata]

 Score =  347 bits (889), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 168/244 (68%), Positives = 201/244 (82%), Gaps = 5/244 (2%)

Query: 5   SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
           + NNGD+LMLEA P+AARPW    NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct: 2   ATNNGDVLMLEAAPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61

Query: 61  KKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDT-TRYQLEILPANKRNDES 119
           KKP+DFLK+LPPL KF FEN P+L KEYERVRAGKPP  +D  +RY+LE+ PANK ND +
Sbjct: 62  KKPADFLKDLPPLPKFDFENCPVLGKEYERVRAGKPPVRIDFESRYKLELPPANKSNDAA 121

Query: 120 AWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIE 179
           AWKQ LQK QR  Q +LI LENLELMSK GPE+WRQ+N RLE  L  MQRLAQEQN++IE
Sbjct: 122 AWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNKEIE 181

Query: 180 AVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 239
            VNRERKYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ ++  +KEAAE GWNL+
Sbjct: 182 KVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQMDSFKKEAAERGWNLE 241

Query: 240 IDME 243
             +E
Sbjct: 242 EKLE 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294072|dbj|BAB02029.1| unnamed protein product [Arabidopsis thaliana]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/277 (61%), Positives = 203/277 (73%), Gaps = 38/277 (13%)

Query: 5   SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
           + NNGD+LMLEA P+AARPW    NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct: 2   ATNNGDVLMLEATPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61

Query: 61  KKPSDFLKNLPPLSKFRFE---------------------------------NHPMLAKE 87
           KKP+DFLK+LPPL KF F+                                 N P+L KE
Sbjct: 62  KKPADFLKDLPPLPKFDFKLGFGNFVGLGFKGNLVNSNLLVSGFYFILDFIGNCPVLGKE 121

Query: 88  YERVRAGKPPAVLDT-TRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMS 146
           YERVRAGKPP  +D  +RY+LE+ PANKRND++AWKQ LQK QR  Q +LI LENLELMS
Sbjct: 122 YERVRAGKPPVRIDFESRYKLEMPPANKRNDDAAWKQYLQKNQRSLQQKLIELENLELMS 181

Query: 147 KHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWREL 206
           K GPE+WRQ+N RLE  L  MQRLAQEQNE+IE VNRERKYHQQ T+YELNALS +WR+L
Sbjct: 182 KLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEKVNRERKYHQQTTSYELNALSQEWRQL 241

Query: 207 CAKNIEIQAACANIESHIEELRKEAAESGWNLDIDME 243
           C KN+EIQ+ACA +E+ I+  +KEAAE GWNL+  +E
Sbjct: 242 CVKNMEIQSACAMLETQIDSFKKEAAERGWNLEEKLE 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734284|emb|CBI15531.3| unnamed protein product [Vitis vinifera]

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 150/197 (76%), Positives = 168/197 (85%)

Query: 56  MRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKR 115
           MRRSSKKPSDFLK+LPPL  F F NHPMLA+EYERVRAGKPP  LD +RY LE+ P NKR
Sbjct: 1   MRRSSKKPSDFLKDLPPLPPFGFHNHPMLAREYERVRAGKPPVALDMSRYGLEMPPMNKR 60

Query: 116 NDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQN 175
           NDE+AWK ALQKAQRL QHQ+IRLENLELMSKHG +VW+QHNQRLEA L  MQ LA EQN
Sbjct: 61  NDETAWKHALQKAQRLLQHQVIRLENLELMSKHGADVWKQHNQRLEAYLSRMQALAMEQN 120

Query: 176 EKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESG 235
           EKIE VNRERKYHQQNTA+ELNALS QW+ELC KNIEI+ ACA IE++IEELR+EAAE G
Sbjct: 121 EKIETVNRERKYHQQNTAFELNALSAQWKELCEKNIEIRTACAKIENNIEELRREAAERG 180

Query: 236 WNLDIDMEKGFLAQSGQ 252
           WNLD +++ G L+ S Q
Sbjct: 181 WNLDANIDNGSLSHSEQ 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:505006356	253	MOS4 "Modifier of snc1,4" [Ara	0.940	0.944	0.696	8.3e-90
UNIPROTKB|E1BTS4	225	BCAS2 "Uncharacterized protein	0.807	0.911	0.314	2.7e-29
FB|FBgn0039558	278	CG4980 [Drosophila melanogaste	0.791	0.723	0.344	1.2e-28
UNIPROTKB|Q5RAX7	226	BCAS2 "Pre-mRNA-splicing facto	0.807	0.907	0.317	1.5e-28
UNIPROTKB|O75934	225	BCAS2 "Pre-mRNA-splicing facto	0.807	0.911	0.309	3.1e-28
MGI|MGI:1915433	225	Bcas2 "breast carcinoma amplif	0.807	0.911	0.309	3.1e-28
UNIPROTKB|E2RL57	225	BCAS2 "Uncharacterized protein	0.807	0.911	0.309	5e-28
RGD|1306485	225	Bcas2 "breast carcinoma amplif	0.807	0.911	0.309	5e-28
UNIPROTKB|Q5E9D4	225	BCAS2 "Breast carcinoma amplif	0.807	0.911	0.304	8.2e-28
UNIPROTKB|I6L631	225	BCAS2 "Uncharacterized protein	0.807	0.911	0.304	8.2e-28

TAIR|locus:505006356 MOS4 "Modifier of snc1,4" [Arabidopsis thaliana (taxid:3702)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 170/244 (69%), Positives = 203/244 (83%)

Query:     5 SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
             + NNGD+LMLEA P+AARPW    NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct:     2 ATNNGDVLMLEATPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61

Query:    61 KKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLD-TTRYQLEILPANKRNDES 119
             KKP+DFLK+LPPL KF F+N P+L KEYERVRAGKPP  +D  +RY+LE+ PANKRND++
Sbjct:    62 KKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDA 121

Query:   120 AWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIE 179
             AWKQ LQK QR  Q +LI LENLELMSK GPE+WRQ+N RLE  L  MQRLAQEQNE+IE
Sbjct:   122 AWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIE 181

Query:   180 AVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 239
              VNRERKYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ I+  +KEAAE GWNL+
Sbjct:   182 KVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLE 241

Query:   240 IDME 243
               +E
Sbjct:   242 EKLE 245

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IMP

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|E1BTS4 BCAS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 65/207 (31%), Positives = 116/207 (56%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  LP      FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLPAHDCSAFETE-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELMS+
Sbjct:    70 FERLAARQPLELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
             HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  L 
Sbjct:   130 HGCNAWKVYNEHLVHMIEQAQKELQKLRKSIQDLNWQRKNMQLTAGAKLREMESTWVSLV 189

Query:   208 AKNIEIQAACANIESHIEELRKEAAES 234
             +KN EI+     +E+ I +++++  E+
Sbjct:   190 SKNYEIERTIVQLENEISQIKQQHGEA 216

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

FB|FBgn0039558 CG4980 [Drosophila melanogaster (taxid:7227)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 70/203 (34%), Positives = 110/203 (54%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             I+DALPYID  Y D  V+E    MVE+E RR  +   ++L +LP  +   FE  P++A E
Sbjct:     6 IVDALPYIDHGYDDVGVRESALAMVEEECRRY-RPTKNYLDHLPLPASSPFET-PLMANE 63

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
             +ER++   P   L   RY+L   P+ K ++ SAW++A++ +    +HQ +R  NLELM  
Sbjct:    64 FERIQNRLPMETLSMKRYELPPPPSGKLSEVSAWQEAIENSMAQLEHQWVRSLNLELMLD 123

Query:   148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
             +G E W+ + +   A+    Q   Q+  + I+ VN +RK  Q      L +L   W  L 
Sbjct:   124 YGTEAWKSYLEVFTAMQAKAQLQLQQLKKDIQDVNWQRKQAQTQAGERLRSLEAHWVLLV 183

Query:   208 AKNIEIQAACANIESHIEELRKE 230
             +KN EI+  C  +E  +   R++
Sbjct:   184 SKNYEIETECVELEKIVHAARQQ 206

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

UNIPROTKB|Q5RAX7 BCAS2 "Pre-mRNA-splicing factor SPF27" [Pongo abelii (taxid:9601)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 66/208 (31%), Positives = 116/208 (55%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPAN-KRNDESAWKQALQKAQRLSQHQLIRLENLELMS 146
             +ER+ A +P  +L   RY+L   P+  K+ND +AW++ +  +    +HQ +R+ENLELMS
Sbjct:    70 FERLAARQPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIENLELMS 129

Query:   147 KHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWREL 206
             +HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  L
Sbjct:   130 QHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSL 189

Query:   207 CAKNIEIQAACANIESHIEELRKEAAES 234
              +KN EI+     +E+ I +++++  E+
Sbjct:   190 VSKNYEIERTIVQLENEIYQIKQQHGEA 217

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0000974 "Prp19 complex" evidence=ISS

UNIPROTKB|O75934 BCAS2 "Pre-mRNA-splicing factor SPF27" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 64/207 (30%), Positives = 115/207 (55%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELMS+
Sbjct:    70 FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
             HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  L 
Sbjct:   130 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLV 189

Query:   208 AKNIEIQAACANIESHIEELRKEAAES 234
             +KN EI+     +E+ I +++++  E+
Sbjct:   190 SKNYEIERTIVQLENEIYQIKQQHGEA 216

GO:0006397 "mRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005681 "spliceosomal complex" evidence=IDA

MGI|MGI:1915433 Bcas2 "breast carcinoma amplified sequence 2" [Mus musculus (taxid:10090)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 64/207 (30%), Positives = 115/207 (55%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELMS+
Sbjct:    70 FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
             HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  L 
Sbjct:   130 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLV 189

Query:   208 AKNIEIQAACANIESHIEELRKEAAES 234
             +KN EI+     +E+ I +++++  E+
Sbjct:   190 SKNYEIERTIVQLENEIYQIKQQHGEA 216

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|E2RL57 BCAS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 64/207 (30%), Positives = 115/207 (55%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELMS+
Sbjct:    70 FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
             HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  L 
Sbjct:   130 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESTWVSLV 189

Query:   208 AKNIEIQAACANIESHIEELRKEAAES 234
             +KN EI+     +E+ I +++++  E+
Sbjct:   190 SKNYEIERTIVQLENEIFQMKQQHGEA 216

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

RGD|1306485 Bcas2 "breast carcinoma amplified sequence 2" [Rattus norvegicus (taxid:10116)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 64/207 (30%), Positives = 114/207 (55%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
             +ER+ A +P  +L   RY+L    + ++ND +AW+  +  +    +HQ +R+ENLELMS+
Sbjct:    70 FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQDCVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
             HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  L 
Sbjct:   130 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGAKLREMESNWVSLV 189

Query:   208 AKNIEIQAACANIESHIEELRKEAAES 234
             +KN EI+     +E+ I +++++  E+
Sbjct:   190 SKNYEIERTIVQLENEIYQIKQQHGEA 216

GO:0005681 "spliceosomal complex" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|Q5E9D4 BCAS2 "Breast carcinoma amplified sequence 2" [Bos taurus (taxid:9913)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 63/207 (30%), Positives = 115/207 (55%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELMS+
Sbjct:    70 FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
             HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  L 
Sbjct:   130 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESTWVSLV 189

Query:   208 AKNIEIQAACANIESHIEELRKEAAES 234
             +KN EI+     +E+ + +++++  E+
Sbjct:   190 SKNYEIERTIVQLENELFQMKQQHGEA 216

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|I6L631 BCAS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 63/207 (30%), Positives = 115/207 (55%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSK 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELMS+
Sbjct:    70 FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 HGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 207
             HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +RK  Q     +L  + + W  L 
Sbjct:   130 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESTWVSLV 189

Query:   208 AKNIEIQAACANIESHIEELRKEAAES 234
             +KN EI+     +E+ + +++++  E+
Sbjct:   190 SKNYEIERTIVQLENELFQMKQQHGEA 216

GO:0006397 "mRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RKQ0	SPF27_DANRE	No assigned EC number	0.3009	0.8031	0.9066	yes	no
Q949S9	SPF27_ARATH	No assigned EC number	0.6967	0.9409	0.9446	yes	no
Q6PBE2	SPF27_XENTR	No assigned EC number	0.3207	0.8267	0.9417	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017780001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (246 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002219001	SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (1012 aa)					•		•		0.844
	GSVIVG00020342001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (453 aa)				•	•		•		0.772
	GSVIVG00016680001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (570 aa)				•	•		•		0.560
	GSVIVG00009727001	SubName- Full=Chromosome undetermined scaffold_247, whole genome shotgun sequence; (888 aa)					•		•		0.530
	GSVIVG00028826001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (563 aa)					•		•		0.474
	GSVIVG00000309001	SubName- Full=Chromosome chr9 scaffold_104, whole genome shotgun sequence; (1279 aa)					•		•		0.422
	GSVIVG00005499001	SubName- Full=Chromosome chr13 scaffold_152, whole genome shotgun sequence; (1446 aa)					•		•		0.410
	GSVIVG00010038001	SubName- Full=Chromosome undetermined scaffold_1811, whole genome shotgun sequence; Flags- Frag [...] (309 aa)				•	•		•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
pfam05700	221	pfam05700, BCAS2, Breast carcinoma amplified seque	4e-71

>gnl|CDD|218703 pfam05700, BCAS2, Breast carcinoma amplified sequence 2 (BCAS2)

 Score =  216 bits (553), Expect = 4e-71
 Identities = 96/214 (44%), Positives = 142/214 (66%), Gaps = 3/214 (1%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFEN--HPMLA 85
           ++DALPYIDDDY +P V+E  D +VE+EM+R  +   ++L++LP L    +     P+L 
Sbjct: 8   VVDALPYIDDDYDEPGVREAADALVEEEMKRY-RPTKNYLEHLPSLQGPDYSLFETPLLR 66

Query: 86  KEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELM 145
            E+ERV+AG+P   LD +RY+L   PA K ND+ AWK AL  A+   +HQLIR+ NLEL+
Sbjct: 67  NEFERVQAGQPMKGLDMSRYELPEPPAGKANDDKAWKAALNNARAQLEHQLIRIINLELL 126

Query: 146 SKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRE 205
           SK+G   W  +N++LEALL  +++   E  E+IE VNR+RKY Q+    +L +L  +W +
Sbjct: 127 SKYGKNAWLVYNEQLEALLKRLEKELAELKEEIEEVNRQRKYSQEEAGEKLRSLEQRWVD 186

Query: 206 LCAKNIEIQAACANIESHIEELRKEAAESGWNLD 239
           L +KN+EI+ ACA +E  IE+L+++ AE  W   
Sbjct: 187 LVSKNLEIEVACAELEQEIEQLKRKKAELKWKEL 220

This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins. BCAS2 is a putative spliceosome associated protein. Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	100.0
KOG3096	225	consensus Spliceosome-associated coiled-coil prote	100.0
PRK10884	206	SH3 domain-containing protein; Provisional	81.71
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	80.56

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=100.00  E-value=2.1e-62  Score=433.27  Aligned_cols=213  Identities=43%  Similarity=0.723  Sum_probs=200.5

Q ss_pred             ccccCCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCcCCcC--CChhhHHHHHHHHcCCCCCCCCcc
Q 025332           26 AEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFE--NHPMLAKEYERVRAGKPPAVLDTT  103 (254)
Q Consensus        26 ~~~vDaLPYID~~~~~p~~r~~ve~LI~eEm~~~~~~p~~~l~~l~plp~~~f~--~sp~l~~E~eRv~~~~p~~~iD~s  103 (254)
                      .++||||||||.+|++|+++++|++||++||++. .++++||+.+||++.+.|.  .+|+|.+||+|++++.||.+|||+
T Consensus         6 ~~~vDaLPYiD~~~~~~~~~~~a~~lI~eE~~~~-~~~~~~l~~lp~~~~~~~~~~~t~~l~~E~~R~~~~~~~~~lD~s   84 (221)
T PF05700_consen    6 EVLVDALPYIDPDYDTPEERQAAEALIEEEMRRY-RPTKNYLPHLPPPPEPPFSAFETPLLQAELERVASGEPMQGLDMS   84 (221)
T ss_pred             ccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhhc-CCCchhHHhCCCCCCCCcccccchhHHHHHHHHHcCCCCCccCHH
Confidence            4599999999999988999999999999999943 4567899999886654432  259999999999999999999999


Q ss_pred             cccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332          104 RYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNR  183 (254)
Q Consensus       104 RY~lp~P~~~~~~D~~aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~  183 (254)
                      ||++|+|++++.+|+++|++|++||+++++|+.+|+.|||||.+||.|+|++||++|+++++.+++++..+|++|++||+
T Consensus        85 RY~l~~p~~~~~~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~  164 (221)
T PF05700_consen   85 RYELPPPPSGKSNDVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNR  164 (221)
T ss_pred             hcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Q 025332          184 ERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD  239 (254)
Q Consensus       184 ~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~~~~~  239 (254)
                      .||..|+.+|.+|+.|+.+|+++|+||++|++||.+||+||.++|+++++++...+
T Consensus       165 ~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~  220 (221)
T PF05700_consen  165 ERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQ  220 (221)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999988764

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]

Probab=100.00  E-value=5.7e-59  Score=398.90  Aligned_cols=213  Identities=38%  Similarity=0.660  Sum_probs=199.7

Q ss_pred             ccccCCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCcCCcCCChhhHHHHHHHHcCCCCCCCCcccc
Q 025332           26 AEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRY  105 (254)
Q Consensus        26 ~~~vDaLPYID~~~~~p~~r~~ve~LI~eEm~~~~~~p~~~l~~l~plp~~~f~~sp~l~~E~eRv~~~~p~~~iD~sRY  105 (254)
                      .++||||||||++|++|+.|+.|.+||++||++  ++|++++-+.+|+|.+.|..||+|.+||+|+.++.||..|||+||
T Consensus         4 ~v~vDALPY~D~~Y~e~~~Rs~a~~lVEeE~rr--~rptknyl~~lp~p~~s~f~t~~m~ne~er~~~k~pm~~l~msRy   81 (225)
T KOG3096|consen    4 EVSVDALPYFDSGYNEPGDRSAAAALVEEECRR--YRPTKNYLDHLPLPDYSAFLTDRMENEFERAGKKEPMEALDMSRY   81 (225)
T ss_pred             ceeeccccccccccCchhhHHHHHHHHHHHHHh--hcchhhhhhcCCCcccchhhhhHHHHHHHHHhccCcchhhhHHhh
Confidence            679999999999999999999999999999998  567665555578888765569999999999999999999999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332          106 QLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRER  185 (254)
Q Consensus       106 ~lp~P~~~~~~D~~aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~R  185 (254)
                      .+|.||+++++|..+|+++|.|+++++|||.+|++|||||++||+++|+.+|+.|+.++..++++|.++|+.|++|||+|
T Consensus        82 elp~Ppagkr~d~~aW~e~l~ns~aqlEhq~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~kk~iq~vn~~R  161 (225)
T KOG3096|consen   82 ELPAPPAGKRNDDAAWQESLLNSMAQLEHQLVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTKKLIQDVNRQR  161 (225)
T ss_pred             cCCCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcc
Q 025332          186 KYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDM  242 (254)
Q Consensus       186 K~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~~~~~~~~  242 (254)
                      |..|+.+|.+|+.||++|..+|+|||+|++||..||.+|.  +.+++.+||+++..-
T Consensus       162 K~~Q~~ag~rL~~le~~wvqLv~knyeie~a~~~le~~i~--~~r~q~r~~~le~~~  216 (225)
T KOG3096|consen  162 KHAQLTAGERLRELEQKWVQLVSKNYEIEVACVQLETQID--KKRQQERGWNLEPKL  216 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHhcCCCCchh
Confidence            9999999999999999999999999999999999999999  556677889986543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.71  E-value=24  Score=31.22  Aligned_cols=9  Identities=33%  Similarity=0.541  Sum_probs=3.7

Q ss_pred             HcCCCCCCC
Q 025332           92 RAGKPPAVL  100 (254)
Q Consensus        92 ~~~~p~~~i  100 (254)
                      .+|.+..-|
T Consensus        51 ~~G~~v~vl   59 (206)
T PRK10884         51 NAGEEVTLL   59 (206)
T ss_pred             cCCCEEEEE
Confidence            344444333

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=80.56  E-value=28  Score=32.45  Aligned_cols=77  Identities=17%  Similarity=0.315  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332          117 DESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYEL  196 (254)
Q Consensus       117 D~~aW~~al~na~aqLehq~~R~~NLELL~k~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L  196 (254)
                      ++++.-.-|.+-.+...|...|+.                         .-++.|..-..+|+++           ..+|
T Consensus        55 ~PEQYLTPLQQKEV~iRHLkakLk-------------------------es~~~l~dRetEI~eL-----------ksQL   98 (305)
T PF15290_consen   55 NPEQYLTPLQQKEVCIRHLKAKLK-------------------------ESENRLHDRETEIDEL-----------KSQL   98 (305)
T ss_pred             CHHHhcChHHHHHHHHHHHHHHHH-------------------------HHHHHHHhhHHHHHHH-----------HHHH
Confidence            345555566666666666666544                         1233333334444443           3345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332          197 NALSTQWRELCAKNIEIQAACANIESHIEELRK  229 (254)
Q Consensus       197 ~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~  229 (254)
                      ..+...|.+--=..+|-..|..+-+.||.+||+
T Consensus        99 ~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQ  131 (305)
T PF15290_consen   99 ARMREDWIEEECHRVEAQLALKEARKEIKQLKQ  131 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666777877766677888888888888888887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 39/245 (15%), Positives = 75/245 (30%), Gaps = 42/245 (17%)

Query: 24  WNAEIIDALPYIDDDYADPRVKEEV---DRMVEQEMRRSSKKPSDFLKNLPPLSKFRFEN 80
            NA+  +A         +   K  +    + V   +  ++        +   L+    E 
Sbjct: 254 QNAKAWNAF--------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EV 303

Query: 81  HPMLAKEYERVRAGK-PPAVLDTTRYQLEILPANKRNDESAWKQALQ-KAQRLSQHQLIR 138
             +L K Y   R    P  VL T   +L I+  + R+  + W         +L+      
Sbjct: 304 KSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 139 LENLELMSKHGPEVWRQHNQRLEAL---------LLGMQRLAQEQNEKIEAVNRERKY-- 187
           L  LE      P  +R+   RL            LL +      +++ +  VN+  KY  
Sbjct: 363 LNVLE------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 188 ---HQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEK 244
                + +   + ++     EL  K     A   +I   ++           +L      
Sbjct: 417 VEKQPKESTISIPSIY---LELKVKLENEYALHRSI---VDHYNIPKTFDSDDLIPPYLD 470

Query: 245 GFLAQ 249
            +   
Sbjct: 471 QYFYS 475

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	91.17
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	88.73
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	86.95
1gk7_A	39	Vimentin; intermediate filament, heptad repeat; 1.	86.66
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	86.31
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	84.91
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	83.75

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=91.17  E-value=1.5  Score=29.21  Aligned_cols=44  Identities=23%  Similarity=0.301  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025332          193 AYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGW  236 (254)
Q Consensus       193 ~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~~  236 (254)
                      ..++..|..-...++.++-+++--|.++|+||..|++=-..-|.
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHgl   46 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNGL   46 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcCC
Confidence            34677888889999999999999999999999999987666554

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=88.73  E-value=4.1  Score=33.90  Aligned_cols=73  Identities=16%  Similarity=0.218  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332          156 HNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRK  229 (254)
Q Consensus       156 ~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~  229 (254)
                      +|+-...+.+.+...-..+|.+.|...+.|| .|+.....+..++..-.++..++-.++.+...|+.++..|+.
T Consensus         4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK-~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa   76 (168)
T 3o0z_A            4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRK-SHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA   76 (168)
T ss_dssp             ------CTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555666666788899999999866 577888888899999999999998888888888888877665

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=86.95  E-value=2.1  Score=29.27  Aligned_cols=50  Identities=24%  Similarity=0.258  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 025332          189 QQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNL  238 (254)
Q Consensus       189 Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~~~~~~~~  238 (254)
                      ++.+..++..|.+-=..++.|.-+++.-|.+.|+||.+|.+=-+.-|+.-
T Consensus         6 ktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHgl~~   55 (58)
T 3a2a_A            6 KTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHGLLG   55 (58)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            34455566677777788999999999999999999999999888877763

>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A

Probab=86.66  E-value=1.2  Score=28.23  Aligned_cols=35  Identities=14%  Similarity=0.183  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332          192 TAYELNALSTQWRELCAKNIEIQAACANIESHIEE  226 (254)
Q Consensus       192 ~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~  226 (254)
                      ...+++.|..++..+|.|+-.+|..+..||.+|..
T Consensus         4 EKe~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~   38 (39)
T 1gk7_A            4 EKVELQELNDRFANYIDKVRFLEQQNKILLAELEQ   38 (39)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35678899999999999999999999999998853

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=86.31  E-value=21  Score=33.03  Aligned_cols=82  Identities=12%  Similarity=0.052  Sum_probs=53.6

Q ss_pred             HHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332          144 LMSKHGPE-VWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIES  222 (254)
Q Consensus       144 LL~k~g~n-aW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~  222 (254)
                      +|.++..+ .+.-....|+.-+.++++.+..++++-..+|..=---|       .+|+.+=.+...+.-|+|..+..|++
T Consensus       385 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (471)
T 3mq9_A          385 ARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM-------ASLDAEKAQGQKKVEELEGEITTLNH  457 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44554433 34445566777788888888888888888887765555       44555555555666667777777777


Q ss_pred             HHHHHHHHHH
Q 025332          223 HIEELRKEAA  232 (254)
Q Consensus       223 ei~~lk~~~~  232 (254)
                      +++.++.+..
T Consensus       458 ~~~~~~~~~~  467 (471)
T 3mq9_A          458 KLQDASAEVE  467 (471)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666665543

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=84.91  E-value=9.5  Score=27.95  Aligned_cols=62  Identities=19%  Similarity=0.261  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025332          162 ALLLGMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEA  231 (254)
Q Consensus       162 ~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~lv~kn~eie~A~~~Le~ei~~lk~~~  231 (254)
                      ++...|+.++..+.---+++++.|--.+        .++.+-++.-.+|-++......|+.++++|+..+
T Consensus        14 eLQSALeaEIqAKQ~i~EELs~vr~~ni--------~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~   75 (81)
T 1wt6_A           14 ELQEALEEEVLTRQSLSREMEAIRTDNQ--------NFASQLREAEARNRDLEAHVRQLQERMELLQAEG   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            5567788898888888888888865544        3445555666677777777788888888876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00